Query 001224
Match_columns 1120
No_of_seqs 824 out of 4608
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 17:18:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 1.8E-66 6.2E-71 631.4 73.8 565 359-1082 11-577 (577)
2 1nr0_A Actin interacting prote 100.0 7.1E-65 2.4E-69 617.6 66.6 577 363-1084 17-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 2.2E-62 7.4E-67 595.6 67.4 564 310-1029 6-577 (577)
4 1nr0_A Actin interacting prote 100.0 2.4E-61 8.2E-66 586.6 66.8 541 358-1031 53-610 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-60 3.8E-65 634.2 65.2 597 359-1085 610-1249(1249)
6 1pgu_A Actin interacting prote 100.0 5.6E-58 1.9E-62 561.8 58.9 563 362-1085 16-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-56 4.2E-61 595.4 62.9 568 421-1088 610-1210(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-55 4.4E-60 554.5 65.3 628 358-1075 11-819 (902)
9 1pgu_A Actin interacting prote 100.0 5.1E-55 1.8E-59 535.5 62.8 524 355-1032 54-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-53 3.7E-58 537.0 57.2 593 422-1095 13-795 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.7E-45 5.9E-50 466.6 57.7 465 360-1028 9-501 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 9E-44 3.1E-48 450.9 50.2 467 421-1082 8-502 (814)
13 1vyh_C Platelet-activating fac 100.0 1.1E-42 3.9E-47 400.3 40.3 306 360-786 104-409 (410)
14 1vyh_C Platelet-activating fac 100.0 1.9E-39 6.4E-44 373.4 39.4 306 422-938 104-410 (410)
15 3ow8_A WD repeat-containing pr 100.0 9.8E-39 3.4E-43 353.8 41.1 288 422-938 28-320 (321)
16 1got_B GT-beta; complex (GTP-b 100.0 3.7E-38 1.3E-42 353.1 42.7 291 358-785 49-340 (340)
17 2pbi_B Guanine nucleotide-bind 100.0 4.6E-38 1.6E-42 353.9 41.0 294 358-785 58-354 (354)
18 1r5m_A SIR4-interacting protei 100.0 4.7E-38 1.6E-42 365.4 40.8 339 423-938 42-424 (425)
19 3ow8_A WD repeat-containing pr 100.0 1.2E-37 4.2E-42 345.0 39.4 288 360-786 28-319 (321)
20 1got_B GT-beta; complex (GTP-b 100.0 3.5E-37 1.2E-41 345.2 42.6 286 421-894 50-340 (340)
21 3frx_A Guanine nucleotide-bind 100.0 3E-37 1E-41 342.1 41.0 301 360-788 13-317 (319)
22 4g56_B MGC81050 protein; prote 100.0 3.1E-38 1.1E-42 355.5 32.1 322 368-898 9-344 (357)
23 4g56_B MGC81050 protein; prote 100.0 3.3E-38 1.1E-42 355.4 32.0 319 722-1087 18-345 (357)
24 2ynn_A Coatomer subunit beta'; 100.0 5E-37 1.7E-41 337.9 40.4 250 360-656 9-260 (304)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 5E-37 1.7E-41 344.5 39.8 208 421-655 10-225 (345)
26 1r5m_A SIR4-interacting protei 100.0 6.3E-37 2.2E-41 355.9 40.4 359 358-896 39-424 (425)
27 3iz6_a 40S ribosomal protein R 100.0 1.2E-37 4.1E-42 354.7 33.2 306 450-940 48-376 (380)
28 3iz6_a 40S ribosomal protein R 100.0 1.6E-37 5.4E-42 353.8 34.1 300 358-787 60-374 (380)
29 4gqb_B Methylosome protein 50; 100.0 1.6E-37 5.6E-42 346.3 33.5 295 756-1087 29-333 (344)
30 2ynn_A Coatomer subunit beta'; 100.0 1.1E-36 3.9E-41 335.0 39.6 289 465-939 7-302 (304)
31 3frx_A Guanine nucleotide-bind 100.0 3.1E-36 1.1E-40 334.0 42.9 214 421-656 12-228 (319)
32 2pm9_A Protein WEB1, protein t 100.0 1.9E-38 6.3E-43 367.8 25.9 332 427-939 13-414 (416)
33 4gqb_B Methylosome protein 50; 100.0 3.1E-37 1.1E-41 344.1 33.4 292 423-899 27-333 (344)
34 2pbi_B Guanine nucleotide-bind 100.0 3.8E-36 1.3E-40 338.2 41.3 289 421-894 59-354 (354)
35 2xzm_R RACK1; ribosome, transl 100.0 5.6E-36 1.9E-40 336.0 40.8 216 421-655 16-244 (343)
36 1gxr_A ESG1, transducin-like e 100.0 7.5E-36 2.6E-40 334.8 38.7 324 363-896 8-336 (337)
37 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.8E-36 1.3E-40 337.4 36.2 301 755-1088 13-338 (345)
38 2pm9_A Protein WEB1, protein t 100.0 9.2E-38 3.1E-42 361.9 23.1 366 363-898 11-415 (416)
39 3vl1_A 26S proteasome regulato 100.0 1.4E-36 4.9E-41 352.4 32.8 353 365-787 57-418 (420)
40 4ery_A WD repeat-containing pr 100.0 5.7E-35 1.9E-39 323.5 42.8 251 359-656 18-269 (312)
41 1erj_A Transcriptional repress 100.0 2.6E-35 8.9E-40 337.1 40.9 303 424-939 62-389 (393)
42 2j04_B YDR362CP, TAU91; beta p 100.0 8.6E-37 2.9E-41 357.5 28.8 355 354-939 123-517 (524)
43 4ery_A WD repeat-containing pr 100.0 6.7E-35 2.3E-39 323.0 42.2 291 421-896 18-311 (312)
44 1k32_A Tricorn protease; prote 100.0 3E-34 1E-38 370.5 54.3 526 363-1087 13-639 (1045)
45 1erj_A Transcriptional repress 100.0 5.2E-35 1.8E-39 334.6 40.3 275 356-656 56-342 (393)
46 1gxr_A ESG1, transducin-like e 100.0 1.9E-35 6.6E-40 331.4 35.1 320 425-937 8-335 (337)
47 3vl1_A 26S proteasome regulato 100.0 3.2E-35 1.1E-39 340.9 35.9 346 427-939 57-419 (420)
48 2xzm_R RACK1; ribosome, transl 100.0 4E-34 1.4E-38 320.9 42.8 252 360-656 17-286 (343)
49 3v7d_B Cell division control p 100.0 2.7E-34 9.2E-39 337.9 42.1 342 421-937 116-461 (464)
50 2hes_X YDR267CP; beta-propelle 100.0 1.6E-34 5.4E-39 321.9 37.9 254 359-656 9-281 (330)
51 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.3E-34 1.5E-38 333.8 42.5 317 421-939 113-442 (445)
52 2hes_X YDR267CP; beta-propelle 100.0 1.5E-34 5.2E-39 322.0 36.7 292 754-1085 11-328 (330)
53 3gre_A Serine/threonine-protei 100.0 5.3E-36 1.8E-40 349.4 25.3 348 422-936 59-437 (437)
54 4aow_A Guanine nucleotide-bind 100.0 8.5E-34 2.9E-38 318.6 41.6 211 421-656 33-247 (340)
55 4aow_A Guanine nucleotide-bind 100.0 5.7E-34 1.9E-38 320.0 40.2 307 357-789 30-338 (340)
56 1k32_A Tricorn protease; prote 100.0 2.2E-33 7.7E-38 362.3 50.7 490 355-1034 43-639 (1045)
57 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.1E-33 7.2E-38 327.9 44.1 320 359-897 113-442 (445)
58 3v7d_B Cell division control p 100.0 3.7E-33 1.2E-37 328.2 44.3 320 358-895 115-461 (464)
59 3gre_A Serine/threonine-protei 100.0 2.5E-35 8.4E-40 343.7 24.7 386 433-1029 34-437 (437)
60 2j04_B YDR362CP, TAU91; beta p 100.0 4.7E-35 1.6E-39 342.7 26.2 244 372-655 169-428 (524)
61 3zwl_B Eukaryotic translation 100.0 2.4E-33 8.1E-38 318.8 38.9 302 421-941 27-348 (369)
62 3dm0_A Maltose-binding peripla 100.0 1.4E-33 4.7E-38 348.8 38.2 253 360-656 378-633 (694)
63 4a11_B DNA excision repair pro 100.0 2.3E-33 7.8E-38 324.0 36.7 356 386-939 22-405 (408)
64 3k26_A Polycomb protein EED; W 100.0 2.1E-34 7.3E-39 327.1 25.7 318 421-939 13-366 (366)
65 1sq9_A Antiviral protein SKI8; 100.0 8.2E-33 2.8E-37 318.0 35.8 301 463-940 8-396 (397)
66 4e54_B DNA damage-binding prot 100.0 2.2E-33 7.5E-38 326.1 31.2 241 360-643 115-363 (435)
67 3dm0_A Maltose-binding peripla 100.0 1.5E-32 5.1E-37 339.6 39.8 211 421-656 377-593 (694)
68 3zwl_B Eukaryotic translation 100.0 6.6E-32 2.3E-36 306.9 41.3 306 355-789 23-347 (369)
69 4a11_B DNA excision repair pro 100.0 7.5E-33 2.6E-37 319.6 32.9 362 600-1085 21-405 (408)
70 2pm7_B Protein transport prote 100.0 2.1E-32 7.1E-37 299.8 34.4 254 360-654 5-284 (297)
71 3ei3_B DNA damage-binding prot 100.0 1.8E-32 6.1E-37 313.3 35.0 302 421-897 68-382 (383)
72 3i2n_A WD repeat-containing pr 100.0 2.4E-32 8.1E-37 309.1 35.4 299 466-940 13-354 (357)
73 4e54_B DNA damage-binding prot 100.0 2E-33 6.9E-38 326.4 26.1 209 422-656 115-328 (435)
74 3ei3_B DNA damage-binding prot 100.0 1.2E-32 4.2E-37 314.6 31.6 308 606-1032 57-382 (383)
75 1k8k_C P40, ARP2/3 complex 41 100.0 5.4E-32 1.9E-36 308.1 36.8 244 363-655 7-274 (372)
76 3i2n_A WD repeat-containing pr 100.0 5.4E-32 1.8E-36 306.2 36.3 322 421-900 13-356 (357)
77 3k26_A Polycomb protein EED; W 100.0 3.8E-32 1.3E-36 308.5 34.3 264 362-656 16-319 (366)
78 2j04_A TAU60, YPL007P, hypothe 100.0 9.1E-34 3.1E-38 320.0 20.4 326 470-1020 14-349 (588)
79 1k8k_C P40, ARP2/3 complex 41 100.0 3.7E-32 1.3E-36 309.4 32.5 321 422-899 4-363 (372)
80 1sq9_A Antiviral protein SKI8; 100.0 5.5E-32 1.9E-36 311.1 33.3 252 360-663 12-329 (397)
81 3dwl_C Actin-related protein 2 100.0 3.9E-33 1.3E-37 318.1 23.4 257 363-654 10-280 (377)
82 3odt_A Protein DOA1; ubiquitin 100.0 2.4E-31 8.1E-36 294.6 36.8 244 358-656 12-256 (313)
83 2j04_A TAU60, YPL007P, hypothe 100.0 2.1E-33 7.1E-38 317.0 19.9 319 363-885 14-349 (588)
84 4aez_A CDC20, WD repeat-contai 100.0 3.1E-31 1.1E-35 304.6 38.5 293 356-788 83-380 (401)
85 4h5i_A Guanine nucleotide-exch 100.0 2.3E-32 7.8E-37 308.4 27.5 290 472-940 15-344 (365)
86 4h5i_A Guanine nucleotide-exch 100.0 5.7E-32 2E-36 305.2 30.2 203 823-1033 132-344 (365)
87 3odt_A Protein DOA1; ubiquitin 100.0 6.4E-31 2.2E-35 291.2 37.7 285 463-942 10-299 (313)
88 4gga_A P55CDC, cell division c 100.0 1.1E-30 3.7E-35 302.0 40.8 239 366-656 107-354 (420)
89 3dwl_C Actin-related protein 2 100.0 2.8E-32 9.5E-37 311.1 26.5 340 423-895 8-377 (377)
90 4gga_A P55CDC, cell division c 100.0 1.7E-30 5.8E-35 300.4 39.1 298 428-917 107-415 (420)
91 4ggc_A P55CDC, cell division c 100.0 3.4E-30 1.2E-34 286.1 39.3 282 429-939 28-315 (318)
92 2pm7_B Protein transport prote 100.0 9E-31 3.1E-35 286.8 33.6 253 822-1091 7-290 (297)
93 4aez_A CDC20, WD repeat-contai 100.0 9.9E-31 3.4E-35 300.4 34.7 289 423-904 88-387 (401)
94 3bg1_A Protein SEC13 homolog; 100.0 1.3E-31 4.4E-36 296.3 24.3 253 362-654 11-292 (316)
95 3dw8_B Serine/threonine-protei 100.0 2.2E-30 7.7E-35 302.9 35.2 273 361-656 25-374 (447)
96 3bg1_A Protein SEC13 homolog; 100.0 4.9E-31 1.7E-35 291.6 27.5 225 421-655 8-247 (316)
97 3f3f_A Nucleoporin SEH1; struc 100.0 5.3E-30 1.8E-34 288.5 35.5 226 421-656 6-250 (351)
98 1yfq_A Cell cycle arrest prote 100.0 9.1E-30 3.1E-34 285.9 34.3 294 421-894 6-321 (342)
99 3mmy_A MRNA export factor; mRN 100.0 9.8E-30 3.3E-34 288.8 33.9 300 421-895 34-344 (368)
100 4ggc_A P55CDC, cell division c 100.0 6.2E-29 2.1E-33 275.9 37.7 282 760-1087 28-317 (318)
101 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-29 7.8E-34 292.6 35.5 233 362-656 131-366 (435)
102 1yfq_A Cell cycle arrest prote 100.0 7.4E-30 2.5E-34 286.7 30.0 245 362-656 9-283 (342)
103 3mmy_A MRNA export factor; mRN 100.0 1.9E-29 6.6E-34 286.4 32.9 254 356-656 30-305 (368)
104 1p22_A F-BOX/WD-repeat protein 100.0 2.5E-29 8.4E-34 292.3 34.4 276 467-942 129-417 (435)
105 3dw8_B Serine/threonine-protei 100.0 2.4E-29 8E-34 294.2 34.4 306 756-1083 27-444 (447)
106 3jrp_A Fusion protein of prote 100.0 2.4E-29 8E-34 287.0 33.5 256 360-656 7-288 (379)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 7.8E-30 2.7E-34 293.3 28.6 252 366-656 36-300 (402)
108 3f3f_A Nucleoporin SEH1; struc 100.0 2.9E-29 1E-33 282.5 31.5 260 360-656 7-338 (351)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 7.5E-29 2.5E-33 285.1 31.9 286 762-1087 39-344 (402)
110 3jrp_A Fusion protein of prote 100.0 1.6E-28 5.6E-33 280.0 31.7 251 823-1086 10-288 (379)
111 2xyi_A Probable histone-bindin 100.0 1.6E-28 5.4E-33 284.5 31.4 267 357-656 121-411 (430)
112 3bws_A Protein LP49; two-domai 100.0 2.7E-27 9.1E-32 275.4 38.8 320 428-939 62-432 (433)
113 1l0q_A Surface layer protein; 100.0 1.3E-26 4.3E-31 265.6 40.2 227 377-656 2-234 (391)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.5E-27 8.4E-32 276.6 34.5 263 364-653 4-337 (450)
115 4gq1_A NUP37; propeller, trans 100.0 3.1E-28 1.1E-32 278.0 25.2 267 362-653 87-387 (393)
116 2w18_A PALB2, fancn, partner a 100.0 5.7E-27 2E-31 248.2 32.5 294 473-937 41-355 (356)
117 1l0q_A Surface layer protein; 100.0 1.5E-26 5.1E-31 265.0 38.9 329 439-975 3-364 (391)
118 3jro_A Fusion protein of prote 100.0 6.5E-28 2.2E-32 299.2 28.2 256 360-656 5-286 (753)
119 2w18_A PALB2, fancn, partner a 100.0 2.6E-27 9E-32 250.8 27.9 274 724-1084 57-356 (356)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.7E-27 1.6E-31 274.2 33.0 246 823-1090 101-396 (450)
121 4gq1_A NUP37; propeller, trans 100.0 1.7E-27 5.9E-32 271.9 28.5 349 363-896 14-388 (393)
122 3bws_A Protein LP49; two-domai 100.0 1E-26 3.4E-31 270.5 35.1 296 427-897 123-432 (433)
123 3lrv_A PRE-mRNA-splicing facto 100.0 2.2E-27 7.5E-32 266.1 27.5 198 823-1033 124-334 (343)
124 3vu4_A KMHSV2; beta-propeller 100.0 1.9E-26 6.6E-31 259.2 34.6 295 582-1034 21-338 (355)
125 3vu4_A KMHSV2; beta-propeller 100.0 2E-26 6.7E-31 259.1 33.9 236 361-656 16-272 (355)
126 3jro_A Fusion protein of prote 100.0 3.9E-27 1.3E-31 292.2 30.5 251 822-1087 7-287 (753)
127 2xyi_A Probable histone-bindin 100.0 1.9E-26 6.5E-31 267.1 33.4 212 421-656 123-354 (430)
128 3lrv_A PRE-mRNA-splicing facto 100.0 5.8E-27 2E-31 262.7 27.5 280 478-939 43-333 (343)
129 1nir_A Nitrite reductase; hemo 99.9 3.1E-25 1E-29 262.2 39.3 335 371-907 144-524 (543)
130 1nir_A Nitrite reductase; hemo 99.9 1.7E-25 5.7E-30 264.4 36.6 334 478-996 144-522 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 3E-23 1E-27 238.0 28.3 242 364-656 62-345 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.5E-23 8.6E-28 238.6 27.4 303 470-920 61-409 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-22 3.8E-27 254.0 34.8 258 364-654 36-366 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-22 4.2E-27 253.6 33.4 343 426-940 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 5.7E-23 2E-27 255.9 27.7 235 365-656 17-290 (723)
136 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-21 4.3E-26 242.8 30.6 243 826-1087 122-437 (706)
137 1ri6_A Putative isomerase YBHE 99.9 4.1E-21 1.4E-25 215.2 31.0 301 722-1064 7-333 (343)
138 2z3z_A Dipeptidyl aminopeptida 99.9 2.2E-21 7.5E-26 240.7 31.4 249 366-654 27-341 (706)
139 1xfd_A DIP, dipeptidyl aminope 99.9 3.2E-21 1.1E-25 240.1 28.5 277 759-1073 62-428 (723)
140 1ri6_A Putative isomerase YBHE 99.9 2E-20 6.7E-25 209.6 30.9 245 823-1087 36-310 (343)
141 3u4y_A Uncharacterized protein 99.9 7E-20 2.4E-24 204.0 35.2 239 370-656 3-253 (331)
142 3u4y_A Uncharacterized protein 99.9 3.2E-20 1.1E-24 206.8 29.4 285 764-1087 4-306 (331)
143 1pby_B Quinohemoprotein amine 99.9 6.3E-20 2.1E-24 204.9 30.9 197 828-1040 85-318 (337)
144 3vgz_A Uncharacterized protein 99.9 1.9E-19 6.6E-24 202.5 32.8 273 757-1076 40-335 (353)
145 3vgz_A Uncharacterized protein 99.9 2E-19 6.8E-24 202.4 32.6 250 361-656 37-304 (353)
146 1pby_B Quinohemoprotein amine 99.9 4.2E-20 1.4E-24 206.3 26.4 267 770-1088 2-313 (337)
147 3hfq_A Uncharacterized protein 99.9 1.7E-19 5.9E-24 202.3 30.2 246 823-1085 38-317 (347)
148 2ojh_A Uncharacterized protein 99.8 1.1E-19 3.8E-24 198.6 23.9 234 823-1076 40-293 (297)
149 2oit_A Nucleoporin 214KDA; NH2 99.8 2.2E-18 7.5E-23 197.9 34.4 314 758-1085 37-405 (434)
150 2ojh_A Uncharacterized protein 99.8 5E-19 1.7E-23 193.4 26.0 241 356-646 33-293 (297)
151 3hfq_A Uncharacterized protein 99.8 1.4E-18 4.8E-23 194.9 29.8 279 728-1037 14-324 (347)
152 1z68_A Fibroblast activation p 99.8 5.3E-19 1.8E-23 219.6 27.3 334 586-1040 21-451 (719)
153 1z68_A Fibroblast activation p 99.8 4.6E-19 1.6E-23 220.2 26.0 230 369-651 20-340 (719)
154 4a5s_A Dipeptidyl peptidase 4 99.8 7.8E-18 2.7E-22 208.8 36.1 233 365-656 17-295 (740)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 6.5E-18 2.2E-22 193.9 31.3 266 364-654 36-332 (434)
156 1jmx_B Amine dehydrogenase; ox 99.8 3E-18 1E-22 192.3 26.0 236 829-1087 4-327 (349)
157 3o4h_A Acylamino-acid-releasin 99.8 2.5E-18 8.7E-23 207.5 25.5 234 363-653 20-274 (582)
158 3scy_A Hypothetical bacterial 99.8 4.4E-17 1.5E-21 183.7 33.3 275 727-1037 24-344 (361)
159 3scy_A Hypothetical bacterial 99.8 4.8E-17 1.6E-21 183.4 33.3 243 823-1085 48-337 (361)
160 3o4h_A Acylamino-acid-releasin 99.8 2.6E-18 9E-23 207.4 24.4 270 471-939 21-315 (582)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.2E-17 4E-22 188.4 27.9 251 824-1086 39-342 (365)
162 4a5s_A Dipeptidyl peptidase 4 99.8 9.8E-17 3.4E-21 198.9 38.2 334 585-1040 21-457 (740)
163 1jmx_B Amine dehydrogenase; ox 99.8 3.4E-17 1.2E-21 183.7 26.2 260 369-663 4-332 (349)
164 2oiz_A Aromatic amine dehydrog 99.7 4.7E-16 1.6E-20 174.1 30.6 222 825-1067 108-360 (361)
165 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.1E-16 7.1E-21 178.1 27.2 251 758-1034 40-343 (365)
166 2oiz_A Aromatic amine dehydrog 99.7 2.2E-15 7.4E-20 168.7 32.6 228 375-643 14-272 (361)
167 3pe7_A Oligogalacturonate lyas 99.7 4.4E-16 1.5E-20 177.6 27.3 251 358-656 24-330 (388)
168 3pe7_A Oligogalacturonate lyas 99.7 6.5E-16 2.2E-20 176.1 28.6 207 422-656 26-274 (388)
169 3fvz_A Peptidyl-glycine alpha- 99.7 6.7E-15 2.3E-19 162.9 26.3 251 824-1086 23-323 (329)
170 3fvz_A Peptidyl-glycine alpha- 99.7 1.7E-14 5.9E-19 159.6 29.5 250 365-655 24-322 (329)
171 1q7f_A NHL, brain tumor CG1071 99.7 5.6E-14 1.9E-18 152.3 31.0 243 823-1086 28-281 (286)
172 1qks_A Cytochrome CD1 nitrite 99.7 2.5E-13 8.6E-18 159.4 38.5 332 593-1040 168-546 (567)
173 3c5m_A Oligogalacturonate lyas 99.6 6.4E-15 2.2E-19 168.4 23.3 162 428-644 37-208 (396)
174 1qks_A Cytochrome CD1 nitrite 99.6 6.5E-13 2.2E-17 155.9 40.5 333 485-996 167-546 (567)
175 3c5m_A Oligogalacturonate lyas 99.6 5.2E-15 1.8E-19 169.1 22.0 239 366-656 37-330 (396)
176 3azo_A Aminopeptidase; POP fam 99.6 2E-14 6.9E-19 176.5 27.9 335 466-937 18-409 (662)
177 1q7f_A NHL, brain tumor CG1071 99.6 2.2E-13 7.5E-18 147.6 32.4 248 363-656 28-281 (286)
178 4a2l_A BT_4663, two-component 99.6 1.7E-10 6E-15 144.0 62.8 554 364-1086 87-660 (795)
179 3azo_A Aminopeptidase; POP fam 99.6 2.7E-14 9.3E-19 175.3 27.5 245 358-653 17-321 (662)
180 4a2l_A BT_4663, two-component 99.6 3.9E-10 1.3E-14 140.8 61.2 545 364-1087 42-616 (795)
181 2gop_A Trilobed protease; beta 99.6 2.4E-13 8E-18 152.1 27.4 221 825-1084 59-330 (347)
182 3e5z_A Putative gluconolactona 99.6 6.3E-13 2.2E-17 144.7 28.9 244 358-656 21-287 (296)
183 2gop_A Trilobed protease; beta 99.5 7.1E-13 2.4E-17 148.2 26.2 221 365-655 15-291 (347)
184 2dg1_A DRP35, lactonase; beta 99.5 8.4E-13 2.9E-17 146.6 26.5 282 758-1084 6-313 (333)
185 2xdw_A Prolyl endopeptidase; a 99.5 8.4E-13 2.9E-17 162.8 28.4 248 363-656 123-415 (710)
186 3sjl_D Methylamine dehydrogena 99.5 8.9E-12 3E-16 136.3 33.0 205 826-1040 138-371 (386)
187 3dsm_A Uncharacterized protein 99.5 1E-12 3.5E-17 145.0 25.7 238 825-1087 44-303 (328)
188 2xdw_A Prolyl endopeptidase; a 99.5 4.7E-12 1.6E-16 156.1 33.8 245 756-1034 123-416 (710)
189 3v9f_A Two-component system se 99.5 2E-08 6.7E-13 125.1 66.8 609 364-1085 18-656 (781)
190 2mad_H Methylamine dehydrogena 99.5 2.7E-11 9.1E-16 135.2 36.5 204 827-1039 127-357 (373)
191 2z2n_A Virginiamycin B lyase; 99.5 3.1E-11 1.1E-15 131.4 35.7 281 756-1087 13-297 (299)
192 3no2_A Uncharacterized protein 99.5 1.9E-12 6.6E-17 138.1 24.2 251 835-1101 4-268 (276)
193 3dsm_A Uncharacterized protein 99.5 3.4E-12 1.2E-16 140.8 26.9 273 728-1040 15-309 (328)
194 2bkl_A Prolyl endopeptidase; m 99.5 7.3E-13 2.5E-17 162.8 22.7 241 823-1087 119-399 (695)
195 3e5z_A Putative gluconolactona 99.5 4E-12 1.4E-16 138.3 25.5 238 757-1036 27-290 (296)
196 2dg1_A DRP35, lactonase; beta 99.5 5.1E-11 1.7E-15 132.1 34.8 246 360-646 40-301 (333)
197 1rwi_B Serine/threonine-protei 99.5 5.8E-12 2E-16 135.0 26.0 238 826-1087 25-266 (270)
198 2bkl_A Prolyl endopeptidase; m 99.5 2.3E-12 7.9E-17 158.3 25.3 283 717-1036 76-401 (695)
199 2z2n_A Virginiamycin B lyase; 99.5 2.2E-10 7.7E-15 124.6 38.4 238 363-653 13-253 (299)
200 1rwi_B Serine/threonine-protei 99.5 6.8E-12 2.3E-16 134.4 25.7 239 366-656 25-265 (270)
201 3sjl_D Methylamine dehydrogena 99.5 7.2E-12 2.5E-16 137.1 25.1 277 764-1087 39-365 (386)
202 3v9f_A Two-component system se 99.5 3.5E-08 1.2E-12 122.8 61.0 509 365-1031 115-655 (781)
203 2mad_H Methylamine dehydrogena 99.4 1.4E-10 4.8E-15 129.4 33.9 237 829-1087 70-352 (373)
204 3no2_A Uncharacterized protein 99.4 1.6E-11 5.6E-16 130.9 24.7 232 379-663 7-259 (276)
205 3c75_H MADH, methylamine dehyd 99.4 1.1E-10 3.7E-15 130.4 31.3 207 827-1040 179-410 (426)
206 1yr2_A Prolyl oligopeptidase; 99.4 3.2E-11 1.1E-15 149.2 26.4 282 717-1035 115-444 (741)
207 2qc5_A Streptogramin B lactona 99.4 1.6E-09 5.4E-14 117.9 35.7 278 756-1084 18-299 (300)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2.9E-10 9.9E-15 124.7 29.2 256 362-655 15-299 (314)
209 1yr2_A Prolyl oligopeptidase; 99.3 2.3E-11 7.9E-16 150.5 21.9 244 364-656 162-442 (741)
210 2qc5_A Streptogramin B lactona 99.3 3.8E-09 1.3E-13 114.7 36.2 238 363-653 18-258 (300)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 2.3E-10 7.8E-15 125.6 24.5 245 758-1032 18-299 (314)
212 3dr2_A Exported gluconolactona 99.3 8E-10 2.7E-14 120.4 27.3 239 358-648 38-300 (305)
213 3hrp_A Uncharacterized protein 99.3 2E-09 6.8E-14 122.0 30.3 255 365-653 131-408 (409)
214 3c75_H MADH, methylamine dehyd 99.3 5.7E-10 1.9E-14 124.6 24.9 256 374-662 82-408 (426)
215 3g4e_A Regucalcin; six bladed 99.3 1.8E-09 6E-14 117.2 27.8 236 365-645 13-262 (297)
216 3hrp_A Uncharacterized protein 99.2 1.3E-09 4.4E-14 123.5 27.1 248 825-1083 131-408 (409)
217 2qe8_A Uncharacterized protein 99.2 1.6E-10 5.6E-15 128.2 19.4 271 758-1079 17-315 (343)
218 3g4e_A Regucalcin; six bladed 99.2 1.3E-09 4.5E-14 118.1 25.7 229 759-1021 14-261 (297)
219 1xip_A Nucleoporin NUP159; bet 99.2 1.6E-10 5.6E-15 127.1 17.6 173 825-1018 38-230 (388)
220 1mda_H Methylamine dehydrogena 99.2 2.9E-10 9.8E-15 125.0 19.2 197 827-1040 126-354 (368)
221 4a0p_A LRP6, LRP-6, low-densit 99.2 2.6E-05 9E-10 92.6 64.4 525 379-1087 9-551 (628)
222 3iuj_A Prolyl endopeptidase; h 99.2 2.1E-09 7.1E-14 131.6 26.4 245 363-656 127-406 (693)
223 2qe8_A Uncharacterized protein 99.2 1.8E-09 6.3E-14 119.7 23.3 248 365-645 17-311 (343)
224 2ghs_A AGR_C_1268P; regucalcin 99.2 1.1E-08 3.9E-13 112.3 29.2 228 366-645 50-292 (326)
225 1kb0_A Quinohemoprotein alcoho 99.2 1E-08 3.5E-13 123.9 31.0 203 869-1085 246-567 (677)
226 2ghs_A AGR_C_1268P; regucalcin 99.1 1.2E-08 4E-13 112.1 28.2 225 760-1022 51-292 (326)
227 1kb0_A Quinohemoprotein alcoho 99.1 4.9E-09 1.7E-13 126.7 26.7 79 845-925 457-536 (677)
228 1xip_A Nucleoporin NUP159; bet 99.1 7.4E-10 2.5E-14 121.8 17.6 177 428-643 39-232 (388)
229 3s94_A LRP-6, low-density lipo 99.1 2.9E-05 1E-09 92.1 57.3 504 425-1087 38-553 (619)
230 3dr2_A Exported gluconolactona 99.1 8E-09 2.7E-13 112.5 23.6 228 758-1026 45-301 (305)
231 1yiq_A Quinohemoprotein alcoho 99.1 9.3E-09 3.2E-13 124.6 26.3 78 845-924 455-533 (689)
232 3q7m_A Lipoprotein YFGL, BAMB; 99.1 6.9E-08 2.4E-12 108.7 31.9 158 437-620 52-216 (376)
233 3iuj_A Prolyl endopeptidase; h 99.1 5.4E-09 1.8E-13 127.9 23.6 242 756-1036 127-409 (693)
234 1yiq_A Quinohemoprotein alcoho 99.1 1.6E-08 5.5E-13 122.5 27.4 191 869-1073 238-537 (689)
235 1mda_H Methylamine dehydrogena 99.0 9.2E-09 3.2E-13 113.0 20.7 253 378-664 33-354 (368)
236 3hxj_A Pyrrolo-quinoline quino 99.0 1.2E-08 4.1E-13 112.6 21.1 176 433-652 26-201 (330)
237 2ece_A 462AA long hypothetical 99.0 8.8E-08 3E-12 105.0 26.8 192 827-1020 140-399 (462)
238 3s94_A LRP-6, low-density lipo 99.0 6.9E-05 2.3E-09 88.9 53.8 197 825-1034 349-553 (619)
239 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2.8E-07 9.6E-12 103.7 31.0 233 380-656 56-297 (376)
240 4a0p_A LRP6, LRP-6, low-densit 98.9 0.00033 1.1E-08 83.1 58.2 505 364-1039 36-556 (628)
241 3hxj_A Pyrrolo-quinoline quino 98.9 3.5E-08 1.2E-12 108.8 20.7 217 370-652 25-241 (330)
242 1fwx_A Nitrous oxide reductase 98.9 1.2E-07 4.1E-12 107.9 24.8 242 829-1087 89-433 (595)
243 2ece_A 462AA long hypothetical 98.9 2.6E-07 8.8E-12 101.4 25.8 248 371-643 88-399 (462)
244 1fwx_A Nitrous oxide reductase 98.9 6.6E-07 2.2E-11 101.9 28.9 115 826-942 278-434 (595)
245 2hz6_A Endoplasmic reticulum t 98.9 6E-10 2.1E-14 124.6 3.9 190 877-1093 8-200 (369)
246 2hz6_A Endoplasmic reticulum t 98.9 6.7E-10 2.3E-14 124.2 3.1 186 835-1040 8-200 (369)
247 3ei3_A DNA damage-binding prot 98.8 0.00099 3.4E-08 84.5 57.5 224 838-1085 708-999 (1158)
248 2iwa_A Glutamine cyclotransfer 98.7 7.1E-07 2.4E-11 92.2 19.8 216 856-1087 10-239 (266)
249 2iwa_A Glutamine cyclotransfer 98.7 1.4E-06 4.7E-11 90.1 21.7 200 826-1033 22-238 (266)
250 1npe_A Nidogen, entactin; glyc 98.7 1.2E-05 4E-10 85.2 28.9 202 826-1040 37-246 (267)
251 1kv9_A Type II quinohemoprotei 98.7 1.9E-06 6.4E-11 104.1 25.0 168 869-1040 233-496 (668)
252 1w6s_A Methanol dehydrogenase 98.7 1.2E-05 4E-10 94.7 30.8 166 870-1040 245-511 (599)
253 3ott_A Two-component system se 98.6 0.0034 1.2E-07 77.4 62.5 533 364-1085 62-626 (758)
254 3ei3_A DNA damage-binding prot 98.6 0.0047 1.6E-07 78.4 58.5 215 801-1030 807-1060(1158)
255 1kv9_A Type II quinohemoprotei 98.6 4.9E-06 1.7E-10 100.4 26.9 212 438-657 66-335 (668)
256 3nok_A Glutaminyl cyclase; bet 98.6 9.1E-07 3.1E-11 89.8 16.2 198 856-1072 44-253 (268)
257 3nol_A Glutamine cyclotransfer 98.6 1.6E-06 5.5E-11 88.1 18.0 201 856-1073 32-243 (262)
258 2ad6_A Methanol dehydrogenase 98.6 2.2E-05 7.7E-10 92.5 30.7 196 829-1040 239-502 (571)
259 3nol_A Glutamine cyclotransfer 98.6 2.3E-06 7.9E-11 87.0 18.3 187 827-1022 45-245 (262)
260 2ad6_A Methanol dehydrogenase 98.5 2.7E-05 9.1E-10 91.9 29.9 82 887-976 443-524 (571)
261 1npe_A Nidogen, entactin; glyc 98.5 0.0001 3.5E-09 77.8 30.0 224 365-637 36-263 (267)
262 1flg_A Protein (quinoprotein e 98.5 0.00013 4.4E-09 86.1 33.5 150 888-1040 291-524 (582)
263 2fp8_A Strictosidine synthase; 98.5 6.3E-05 2.2E-09 82.1 28.2 239 825-1087 19-315 (322)
264 1flg_A Protein (quinoprotein e 98.5 9.5E-05 3.2E-09 87.2 31.5 210 438-657 68-357 (582)
265 2p4o_A Hypothetical protein; p 98.4 0.00015 5E-09 78.4 30.2 246 351-645 18-278 (306)
266 3nok_A Glutaminyl cyclase; bet 98.4 4.8E-06 1.6E-10 84.5 16.8 183 827-1021 57-254 (268)
267 1w6s_A Methanol dehydrogenase 98.4 3.5E-05 1.2E-09 90.6 26.2 250 830-1094 111-512 (599)
268 3mbr_X Glutamine cyclotransfer 98.4 1.4E-05 4.9E-10 80.5 19.5 201 856-1072 10-222 (243)
269 2fp8_A Strictosidine synthase; 98.4 0.00012 4E-09 79.9 27.6 253 365-655 19-313 (322)
270 3mbr_X Glutamine cyclotransfer 98.4 3.5E-05 1.2E-09 77.7 20.9 187 825-1021 21-223 (243)
271 2xe4_A Oligopeptidase B; hydro 98.3 4.7E-05 1.6E-09 93.5 25.8 159 366-548 175-354 (751)
272 2p4o_A Hypothetical protein; p 98.3 0.00011 3.8E-09 79.3 26.0 231 825-1075 32-278 (306)
273 3ott_A Two-component system se 98.3 0.019 6.5E-07 70.7 55.5 498 426-1087 21-547 (758)
274 3qqz_A Putative uncharacterize 98.3 0.00028 9.6E-09 72.3 26.2 219 860-1083 21-251 (255)
275 2xbg_A YCF48-like protein; pho 98.3 0.0016 5.5E-08 70.8 33.8 235 824-1082 79-319 (327)
276 2xe4_A Oligopeptidase B; hydro 98.3 4.9E-05 1.7E-09 93.3 24.0 195 826-1030 175-398 (751)
277 3qqz_A Putative uncharacterize 98.3 0.00061 2.1E-08 69.9 27.7 164 363-548 25-204 (255)
278 3v64_C Agrin; beta propeller, 98.2 0.0011 3.8E-08 72.7 30.5 239 825-1087 34-277 (349)
279 1ijq_A LDL receptor, low-densi 98.2 0.00088 3E-08 72.5 28.1 207 824-1040 29-246 (316)
280 3tc9_A Hypothetical hydrolase; 98.1 0.00047 1.6E-08 78.0 26.8 248 825-1084 137-429 (430)
281 4hw6_A Hypothetical protein, I 98.1 0.0005 1.7E-08 77.8 26.7 250 825-1084 139-432 (433)
282 1k3i_A Galactose oxidase precu 98.1 0.00017 6E-09 87.1 24.0 259 804-1074 222-530 (656)
283 3v65_B Low-density lipoprotein 98.1 0.0013 4.6E-08 73.2 28.5 217 357-619 108-326 (386)
284 3v65_B Low-density lipoprotein 98.1 0.00062 2.1E-08 76.0 25.7 206 824-1040 115-326 (386)
285 3v64_C Agrin; beta propeller, 98.1 0.0023 7.9E-08 70.2 29.8 216 357-619 65-283 (349)
286 1ijq_A LDL receptor, low-densi 98.0 0.0046 1.6E-07 66.7 31.1 224 387-656 10-239 (316)
287 3p5b_L Low density lipoprotein 98.0 0.0027 9.3E-08 71.0 30.0 208 824-1040 111-328 (400)
288 2xbg_A YCF48-like protein; pho 98.0 0.012 4.1E-07 63.8 33.5 192 825-1029 122-319 (327)
289 3amr_A 3-phytase; beta-propell 98.0 0.0017 5.8E-08 68.9 24.4 196 835-1040 39-272 (355)
290 1k3i_A Galactose oxidase precu 97.9 0.00034 1.2E-08 84.5 21.7 242 829-1087 190-499 (656)
291 3tc9_A Hypothetical hydrolase; 97.9 0.0034 1.2E-07 70.9 28.1 255 365-653 137-428 (430)
292 4hw6_A Hypothetical protein, I 97.9 0.0031 1.1E-07 71.2 26.5 253 365-654 139-432 (433)
293 3sov_A LRP-6, low-density lipo 97.8 0.0028 9.6E-08 68.3 24.6 228 838-1087 6-240 (318)
294 1n7d_A LDL receptor, low-densi 97.8 0.00021 7.1E-09 86.3 16.7 207 825-1040 406-622 (699)
295 3p5b_L Low density lipoprotein 97.8 0.013 4.6E-07 65.3 30.3 227 386-656 91-321 (400)
296 3kya_A Putative phosphatase; s 97.8 0.0056 1.9E-07 69.1 26.3 253 826-1087 140-477 (496)
297 3m0c_C LDL receptor, low-densi 97.7 0.0086 3E-07 72.6 29.2 207 824-1040 423-640 (791)
298 3sov_A LRP-6, low-density lipo 97.7 0.012 4.1E-07 63.3 27.3 210 365-619 35-246 (318)
299 2xzh_A Clathrin heavy chain 1; 97.7 0.068 2.3E-06 55.5 32.4 235 827-1087 69-334 (365)
300 3kya_A Putative phosphatase; s 97.7 0.0064 2.2E-07 68.6 25.1 254 758-1036 139-479 (496)
301 3m0c_C LDL receptor, low-densi 97.6 0.024 8.2E-07 68.7 29.4 174 357-549 416-590 (791)
302 3amr_A 3-phytase; beta-propell 97.5 0.013 4.5E-07 62.2 22.3 190 878-1084 40-262 (355)
303 1bpo_A Protein (clathrin); cla 97.5 0.19 6.5E-06 54.4 32.2 236 826-1087 67-333 (494)
304 3a9g_A Putative uncharacterize 97.4 0.073 2.5E-06 58.1 28.3 232 825-1073 29-330 (354)
305 2ism_A Putative oxidoreductase 97.4 0.034 1.2E-06 60.8 25.6 232 825-1073 31-333 (352)
306 1n7d_A LDL receptor, low-densi 97.4 0.001 3.6E-08 80.2 14.3 223 356-619 397-622 (699)
307 2p9w_A MAL S 1 allergenic prot 97.4 0.027 9.1E-07 59.3 22.7 203 824-1031 12-264 (334)
308 2xzh_A Clathrin heavy chain 1; 97.2 0.27 9.3E-06 51.1 32.9 248 369-656 71-333 (365)
309 2ism_A Putative oxidoreductase 97.2 0.14 4.9E-06 55.8 27.4 109 363-491 29-152 (352)
310 2g8s_A Glucose/sorbosone dehyd 97.1 0.099 3.4E-06 57.1 25.7 241 826-1084 19-351 (353)
311 3a9g_A Putative uncharacterize 97.0 0.52 1.8E-05 51.2 31.3 109 363-491 27-152 (354)
312 1bpo_A Protein (clathrin); cla 97.0 0.57 2E-05 50.8 31.9 249 369-656 70-332 (494)
313 3ii7_A Kelch-like protein 7; p 97.0 0.15 5.3E-06 54.3 25.1 228 838-1093 14-278 (306)
314 2p9w_A MAL S 1 allergenic prot 96.9 0.019 6.6E-07 60.4 16.0 166 910-1085 14-215 (334)
315 2vpj_A Kelch-like protein 12; 96.9 0.091 3.1E-06 56.0 21.9 221 845-1093 31-284 (301)
316 2xn4_A Kelch-like protein 2; s 96.8 0.25 8.7E-06 52.5 24.6 230 836-1093 16-282 (302)
317 2vpj_A Kelch-like protein 12; 96.6 0.24 8.4E-06 52.5 23.0 188 834-1036 61-282 (301)
318 3pbp_A Nucleoporin NUP82; beta 96.5 0.12 3.9E-06 56.1 18.7 108 830-939 26-158 (452)
319 1cru_A Protein (soluble quinop 96.5 0.65 2.2E-05 52.3 26.4 104 825-928 27-163 (454)
320 1xi4_A Clathrin heavy chain; a 96.4 0.16 5.5E-06 63.5 21.7 237 827-1087 68-333 (1630)
321 4asc_A Kelch repeat and BTB do 96.4 1 3.4E-05 48.1 26.1 223 845-1093 13-283 (315)
322 1zgk_A Kelch-like ECH-associat 96.3 0.51 1.7E-05 50.2 23.4 232 834-1093 23-293 (308)
323 3ii7_A Kelch-like protein 7; p 96.3 0.41 1.4E-05 50.9 22.2 189 834-1037 54-277 (306)
324 2xtc_A F-box-like/WD repeat-co 96.2 0.0035 1.2E-07 50.5 3.9 36 1-36 1-36 (90)
325 3pbp_A Nucleoporin NUP82; beta 96.2 0.054 1.8E-06 58.6 13.9 126 365-500 66-208 (452)
326 2g8s_A Glucose/sorbosone dehyd 96.0 1.3 4.6E-05 48.0 24.9 113 365-492 18-149 (353)
327 3sre_A PON1, serum paraoxonase 96.0 0.43 1.5E-05 51.4 20.3 185 428-643 51-285 (355)
328 2xn4_A Kelch-like protein 2; s 95.8 1.1 3.7E-05 47.4 22.5 187 835-1036 61-280 (302)
329 2be1_A Serine/threonine-protei 95.7 0.051 1.7E-06 58.1 11.4 199 879-1090 11-236 (339)
330 4asc_A Kelch repeat and BTB do 95.7 0.96 3.3E-05 48.2 22.0 193 831-1038 41-283 (315)
331 1uuj_A Platelet-activating fac 95.6 0.0084 2.9E-07 48.0 3.6 56 5-60 10-67 (88)
332 3das_A Putative oxidoreductase 95.6 3.1 0.0001 44.5 29.4 100 826-927 203-326 (347)
333 2nxp_A Transcription initiatio 95.5 0.022 7.6E-07 52.9 6.8 70 65-135 46-115 (156)
334 2uvk_A YJHT; unknown function, 95.5 0.66 2.3E-05 50.6 20.2 91 835-929 19-128 (357)
335 2woz_A Kelch repeat and BTB do 95.4 2.9 9.9E-05 44.4 24.3 222 845-1092 24-292 (318)
336 1zgk_A Kelch-like ECH-associat 95.3 1 3.5E-05 47.8 20.2 187 835-1036 70-291 (308)
337 2uvk_A YJHT; unknown function, 95.2 1.4 4.8E-05 47.9 21.5 59 980-1040 286-350 (357)
338 2woz_A Kelch repeat and BTB do 95.0 2.1 7.2E-05 45.6 21.7 193 831-1038 52-293 (318)
339 1tl2_A L10, protein (tachylect 95.0 0.18 6.1E-06 49.3 11.3 146 825-981 41-203 (236)
340 2be1_A Serine/threonine-protei 95.0 0.24 8E-06 52.9 13.4 114 379-513 12-139 (339)
341 1tl2_A L10, protein (tachylect 94.9 0.08 2.7E-06 51.7 8.7 146 867-1024 42-202 (236)
342 2j4b_A TAF5, transcription ini 94.9 0.016 5.4E-07 52.5 3.6 66 66-133 28-93 (138)
343 2j49_A Transcription initiatio 94.7 0.014 4.7E-07 53.4 2.6 67 65-133 29-95 (148)
344 3s25_A Hypothetical 7-bladed b 94.7 3.4 0.00012 43.4 21.6 175 832-1034 21-218 (302)
345 3das_A Putative oxidoreductase 94.4 6.4 0.00022 42.0 28.9 113 363-491 30-157 (347)
346 1xi4_A Clathrin heavy chain; a 94.3 1.4 4.9E-05 55.3 19.5 212 370-619 71-297 (1630)
347 3sbq_A Nitrous-oxide reductase 94.2 9.1 0.00031 43.0 29.9 102 824-928 322-454 (638)
348 1cru_A Protein (soluble quinop 94.0 3.9 0.00013 46.0 21.5 110 909-1021 27-163 (454)
349 3sbq_A Nitrous-oxide reductase 93.6 12 0.0004 42.2 24.3 195 834-1033 140-409 (638)
350 2zwa_A Leucine carboxyl methyl 92.4 3.8 0.00013 49.1 19.3 197 834-1036 396-639 (695)
351 3b7f_A Glycosyl hydrolase, BNR 92.1 16 0.00056 39.9 27.6 261 824-1092 54-377 (394)
352 3s25_A Hypothetical 7-bladed b 91.5 15 0.00052 38.4 22.9 111 369-512 57-184 (302)
353 3qhy_B Beta-lactamase inhibito 91.1 11 0.00038 39.0 18.9 224 825-1086 24-247 (282)
354 3sre_A PON1, serum paraoxonase 89.9 23 0.00079 37.8 33.7 165 364-548 49-252 (355)
355 3qhy_B Beta-lactamase inhibito 88.8 23 0.00078 36.5 19.0 221 366-654 25-245 (282)
356 2zwa_A Leucine carboxyl methyl 88.6 12 0.0004 44.8 18.8 198 877-1091 397-639 (695)
357 2wg3_C Hedgehog-interacting pr 84.0 15 0.0005 41.2 15.2 114 909-1023 14-160 (463)
358 3q6k_A 43.2 kDa salivary prote 83.1 54 0.0019 35.2 20.6 155 846-1032 124-306 (381)
359 4hvt_A Ritya.17583.B, post-pro 82.1 89 0.0031 37.0 23.7 192 831-1034 136-383 (711)
360 3b7f_A Glycosyl hydrolase, BNR 80.3 70 0.0024 34.7 22.0 207 878-1093 22-268 (394)
361 4gq2_M Nucleoporin NUP120; bet 77.2 68 0.0023 39.7 19.3 73 582-654 237-316 (950)
362 3uc1_A DNA gyrase subunit A; D 74.2 91 0.0031 32.8 19.8 209 426-653 41-277 (327)
363 4gq2_M Nucleoporin NUP120; bet 72.4 13 0.00044 46.2 11.1 42 1001-1042 235-276 (950)
364 3uc1_A DNA gyrase subunit A; D 70.3 1.1E+02 0.0038 32.1 25.2 159 823-988 93-279 (327)
365 3q6k_A 43.2 kDa salivary prote 69.3 1.3E+02 0.0043 32.4 24.0 62 449-511 124-197 (381)
366 2wg3_C Hedgehog-interacting pr 69.0 1.5E+02 0.005 33.0 29.4 103 826-930 15-160 (463)
367 4gco_A Protein STI-1; structur 68.2 20 0.00069 31.3 8.7 99 14-119 22-125 (126)
368 3f7f_A Nucleoporin NUP120; nuc 64.0 38 0.0013 39.6 11.7 37 1003-1041 223-259 (729)
369 3no0_A DNA gyrase subunit A; D 62.9 1.4E+02 0.0047 30.4 20.0 114 823-939 66-196 (276)
370 2lni_A Stress-induced-phosphop 57.3 74 0.0025 27.1 10.6 90 7-102 18-112 (133)
371 3no0_A DNA gyrase subunit A; D 56.3 1.8E+02 0.006 29.6 21.4 205 867-1085 25-246 (276)
372 1zi0_A DNA gyrase subunit A; b 54.0 2E+02 0.007 29.7 25.2 202 379-610 5-225 (307)
373 3mkr_A Coatomer subunit epsilo 53.2 56 0.0019 33.7 10.2 85 5-100 64-156 (291)
374 4ga2_A E3 SUMO-protein ligase 51.6 53 0.0018 29.5 8.7 94 21-121 13-111 (150)
375 3zwu_A Alkaline phosphatase PH 49.8 31 0.0011 39.6 7.9 60 960-1020 477-549 (592)
376 1suu_A DNA gyrase subunit A; t 49.3 2.4E+02 0.0083 29.2 27.6 202 718-939 6-231 (312)
377 1elw_A TPR1-domain of HOP; HOP 48.0 1.1E+02 0.0039 24.9 10.4 102 8-116 7-113 (118)
378 4gcn_A Protein STI-1; structur 46.7 69 0.0023 27.7 8.3 101 15-117 18-124 (127)
379 4fhn_B Nucleoporin NUP120; pro 46.2 77 0.0026 40.3 11.6 40 582-621 239-278 (1139)
380 2k9m_A RNA polymerase sigma fa 45.2 22 0.00074 31.5 4.4 35 2-36 18-53 (130)
381 3kci_A Probable E3 ubiquitin-p 45.1 3.2E+02 0.011 29.3 23.0 70 582-654 106-186 (389)
382 3mkr_A Coatomer subunit epsilo 44.2 1.4E+02 0.0049 30.5 11.6 16 45-60 141-156 (291)
383 3qou_A Protein YBBN; thioredox 44.2 76 0.0026 32.5 9.5 106 9-121 121-231 (287)
384 4a9v_A PHOX; hydrolase, beta-p 43.8 51 0.0018 37.4 8.2 61 960-1021 477-550 (592)
385 2wpv_A GET4, UPF0363 protein Y 43.5 1.6E+02 0.0056 30.4 11.5 109 38-185 17-126 (312)
386 2d68_A FOP, FGFR1OP; alpha hel 41.3 24 0.00083 28.0 3.6 29 7-35 20-48 (82)
387 2vgx_A Chaperone SYCD; alterna 41.3 1.4E+02 0.0047 26.6 9.7 82 13-100 29-115 (148)
388 3l6v_A GYRA, DNA gyrase subuni 40.2 3.7E+02 0.013 28.6 25.6 157 374-548 5-180 (370)
389 4fhn_B Nucleoporin NUP120; pro 39.6 13 0.00043 47.5 2.9 43 1002-1044 238-280 (1139)
390 3sz7_A HSC70 cochaperone (SGT) 39.2 94 0.0032 28.1 8.4 86 10-101 16-106 (164)
391 3upv_A Heat shock protein STI1 39.1 1.1E+02 0.0037 26.0 8.4 88 9-102 8-100 (126)
392 2dba_A Smooth muscle cell asso 39.0 1.9E+02 0.0064 24.9 11.3 104 8-118 31-142 (148)
393 3urz_A Uncharacterized protein 38.0 1.3E+02 0.0044 28.7 9.6 107 6-119 5-132 (208)
394 1na0_A Designed protein CTPR3; 37.5 1.7E+02 0.0058 24.0 9.9 100 11-117 15-119 (125)
395 2xcb_A PCRH, regulatory protei 37.1 1.6E+02 0.0055 25.7 9.5 16 45-60 63-78 (142)
396 3lpz_A GET4 (YOR164C homolog); 36.2 2.2E+02 0.0075 29.8 11.0 108 38-184 16-127 (336)
397 4g26_A Pentatricopeptide repea 36.0 1.8E+02 0.0062 32.7 11.5 30 31-60 133-166 (501)
398 3gyz_A Chaperone protein IPGC; 34.7 1.1E+02 0.0037 27.7 7.8 73 42-121 44-116 (151)
399 1elr_A TPR2A-domain of HOP; HO 34.6 2E+02 0.0068 23.9 9.7 108 9-118 8-121 (131)
400 4hvt_A Ritya.17583.B, post-pro 33.6 6.5E+02 0.022 29.6 29.7 181 845-1035 216-432 (711)
401 3qwp_A SET and MYND domain-con 33.1 1.4E+02 0.0048 32.8 9.7 96 6-104 288-401 (429)
402 4gyw_A UDP-N-acetylglucosamine 32.8 1.4E+02 0.0048 35.5 10.3 106 7-119 10-121 (723)
403 1wp5_A Topoisomerase IV; broke 31.6 4.6E+02 0.016 27.2 24.4 167 426-611 38-225 (323)
404 3q49_B STIP1 homology and U bo 31.3 1.6E+02 0.0056 25.1 8.4 88 8-101 12-104 (137)
405 3hx6_A Type 4 fimbrial biogene 31.2 5.9E+02 0.02 28.7 14.1 78 1008-1088 201-287 (570)
406 1hxi_A PEX5, peroxisome target 30.6 1.1E+02 0.0037 26.1 6.8 51 10-60 22-77 (121)
407 1vk8_A Hypothetical protein TM 30.0 7.5 0.00026 32.8 -1.0 38 22-60 35-72 (106)
408 1hxi_A PEX5, peroxisome target 29.5 1.2E+02 0.004 25.9 6.8 72 42-120 25-96 (121)
409 2q7f_A YRRB protein; TPR, prot 29.2 2.7E+02 0.0092 26.6 10.6 105 8-119 59-169 (243)
410 3f7f_A Nucleoporin NUP120; nuc 29.2 2.5E+02 0.0084 32.9 10.9 30 591-620 230-259 (729)
411 2pl2_A Hypothetical conserved 29.2 2.5E+02 0.0084 26.8 10.0 109 8-120 8-129 (217)
412 2qfc_A PLCR protein; TPR, HTH, 28.9 2.3E+02 0.0078 28.7 10.2 94 7-101 77-182 (293)
413 3hym_B Cell division cycle pro 28.8 2.8E+02 0.0096 28.1 11.2 105 8-119 92-203 (330)
414 2kck_A TPR repeat; tetratricop 28.7 1.5E+02 0.005 23.9 7.3 84 15-102 16-105 (112)
415 3bu8_A Telomeric repeat-bindin 28.5 1.7E+02 0.0059 28.0 7.7 97 70-186 110-207 (235)
416 4asv_A Small glutamine-rich te 28.4 34 0.0012 27.6 2.5 19 1-19 15-33 (92)
417 2nsz_A Programmed cell death p 28.2 1.6E+02 0.0055 25.7 7.3 21 80-100 13-33 (129)
418 2ion_A PDCD4, programmed cell 28.2 1.5E+02 0.0052 26.8 7.3 21 80-100 15-35 (152)
419 4gco_A Protein STI-1; structur 28.1 1.2E+02 0.0041 26.1 6.6 71 43-120 22-92 (126)
420 3gyz_A Chaperone protein IPGC; 27.7 1.6E+02 0.0055 26.4 7.7 86 11-102 42-132 (151)
421 1wp5_A Topoisomerase IV; broke 27.5 5.3E+02 0.018 26.7 26.9 238 834-1085 3-277 (323)
422 2vyi_A SGTA protein; chaperone 27.5 2.6E+02 0.0089 23.0 10.3 84 13-102 20-108 (131)
423 4gyw_A UDP-N-acetylglucosamine 27.3 2E+02 0.0068 34.2 10.3 104 11-121 48-157 (723)
424 2pl2_A Hypothetical conserved 27.1 2.4E+02 0.0083 26.9 9.5 107 7-121 40-163 (217)
425 3as5_A MAMA; tetratricopeptide 26.9 3.3E+02 0.011 24.2 10.3 102 11-119 14-120 (186)
426 4a9v_A PHOX; hydrolase, beta-p 26.8 1.3E+02 0.0045 34.1 7.9 61 866-927 476-549 (592)
427 2fo7_A Synthetic consensus TPR 26.6 2.7E+02 0.0093 23.0 9.9 102 11-119 7-113 (136)
428 3mez_A Mannose-specific lectin 26.5 2.9E+02 0.0099 23.2 8.9 79 912-1018 22-100 (111)
429 3u4t_A TPR repeat-containing p 26.4 2.3E+02 0.008 27.8 9.7 105 10-118 8-117 (272)
430 2k9l_A RNA polymerase sigma fa 26.4 38 0.0013 26.5 2.6 36 2-37 27-63 (76)
431 3vtx_A MAMA; tetratricopeptide 26.1 3.1E+02 0.011 24.8 9.9 112 1-119 34-151 (184)
432 3kci_A Probable E3 ubiquitin-p 25.5 6.3E+02 0.022 26.8 25.4 200 438-655 62-293 (389)
433 2ho1_A Type 4 fimbrial biogene 25.4 3.7E+02 0.013 25.9 10.9 16 45-60 82-97 (252)
434 1a17_A Serine/threonine protei 25.2 2.2E+02 0.0075 25.1 8.4 88 9-102 17-109 (166)
435 4b4t_P 26S proteasome regulato 24.7 2.4E+02 0.0081 31.1 9.7 94 8-102 139-246 (445)
436 3ma5_A Tetratricopeptide repea 24.7 1.2E+02 0.0041 24.6 5.7 54 43-102 16-69 (100)
437 4ga2_A E3 SUMO-protein ligase 24.5 1.3E+02 0.0043 26.9 6.3 101 15-122 41-147 (150)
438 3upv_A Heat shock protein STI1 24.3 1.6E+02 0.0054 24.9 6.8 73 42-121 12-84 (126)
439 2fo7_A Synthetic consensus TPR 24.3 2.6E+02 0.0088 23.1 8.4 85 11-101 40-130 (136)
440 1zi0_A DNA gyrase subunit A; b 24.0 6E+02 0.02 26.0 27.8 236 835-1085 2-277 (307)
441 3iug_A RHO/CDC42/RAC GTPase-ac 24.0 50 0.0017 32.6 3.6 104 8-119 40-156 (229)
442 2xcb_A PCRH, regulatory protei 23.8 1.5E+02 0.005 26.0 6.6 72 42-120 26-97 (142)
443 2yhc_A BAMD, UPF0169 lipoprote 23.7 1.7E+02 0.006 28.1 7.8 97 6-103 5-125 (225)
444 1kdl_A YOPD protein; yersinia, 23.5 46 0.0016 19.3 1.7 14 5-18 4-17 (26)
445 3zwu_A Alkaline phosphatase PH 23.5 1.7E+02 0.0059 33.5 8.3 39 603-642 510-548 (592)
446 3uq3_A Heat shock protein STI1 23.4 2.5E+02 0.0087 27.1 9.2 17 44-60 149-165 (258)
447 1ihg_A Cyclophilin 40; ppiase 23.1 3.1E+02 0.011 29.1 10.2 70 44-120 283-352 (370)
448 1na3_A Designed protein CTPR2; 22.5 2E+02 0.007 22.0 6.8 69 43-118 18-86 (91)
449 2dba_A Smooth muscle cell asso 22.3 2E+02 0.0069 24.7 7.4 77 40-120 34-110 (148)
450 3as5_A MAMA; tetratricopeptide 22.2 3.8E+02 0.013 23.8 9.7 107 7-120 43-155 (186)
451 1oyi_A Double-stranded RNA-bin 22.1 54 0.0019 26.1 2.6 30 6-37 16-45 (82)
452 4g26_A Pentatricopeptide repea 21.9 4.7E+02 0.016 29.2 11.7 95 21-120 86-186 (501)
453 2zux_A YESW protein; beta-prop 21.2 9.2E+02 0.031 27.2 24.1 227 374-637 105-426 (591)
454 2lni_A Stress-induced-phosphop 21.1 1.9E+02 0.0063 24.3 6.7 72 42-120 24-95 (133)
455 2vgx_A Chaperone SYCD; alterna 20.9 1.8E+02 0.0062 25.8 6.6 72 42-120 29-100 (148)
456 2ho1_A Type 4 fimbrial biogene 20.8 5.5E+02 0.019 24.5 12.0 108 7-119 72-185 (252)
457 3u3w_A Transcriptional activat 20.6 4E+02 0.014 26.8 10.2 94 8-102 78-183 (293)
458 1a17_A Serine/threonine protei 20.3 2.1E+02 0.0071 25.3 7.1 89 7-99 48-142 (166)
459 2h6f_A Protein farnesyltransfe 20.2 2.1E+02 0.0073 30.7 8.0 90 7-102 98-194 (382)
460 3sz7_A HSC70 cochaperone (SGT) 20.1 1.9E+02 0.0065 25.9 6.7 73 42-121 19-91 (164)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-66 Score=631.44 Aligned_cols=565 Identities=23% Similarity=0.362 Sum_probs=468.7
Q ss_pred eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224 359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 438 (1120)
Q Consensus 359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 438 (1120)
++.+|.+.|+||+|||||++ ||+|+.|++|+|||. +++.+. .+.+|.+.|++++|||||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg 69 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDG 69 (577)
T ss_dssp EECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTS
T ss_pred EECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCC
Confidence 45579999999999999995 999999999999995 566655 378999999999999999
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 518 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v 518 (1120)
++||+++.|++|+|||+. ++.+. .+.+|.+.|.+++|+|+++ ++++++.|+.+++|+.. ........+|...|
T Consensus 70 ~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~v 142 (577)
T 2ymu_A 70 QTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSSV 142 (577)
T ss_dssp SEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSCE
T ss_pred CEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCce
Confidence 999999999999999975 44443 6889999999999999999 79999999999999965 45566778899999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
..+.+.+ ++..+++++.++.+++|+... ........+...+.. +.++|++.+++++
T Consensus 143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~---------------------~~~~~~~~~l~~~ 198 (577)
T 2ymu_A 143 WGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWG---------------------VAFSPDGQTIASA 198 (577)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEE---------------------EEECTTSSCEEEE
T ss_pred eeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceee---------------------eeecCCCCEEEEE
Confidence 9998755 457899999999999998643 233333444444444 4455555689999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224 599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 678 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1120)
+.||.|++||. +++.+..+..+. ..|.+++|+|++++|++++.|+.|++|+... +.+..+.+|...+.
T Consensus 199 ~~d~~v~~w~~-~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~--~~~~~~~~~~~~v~------- 266 (577)
T 2ymu_A 199 SDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVN------- 266 (577)
T ss_dssp ETTSEEEEECT-TSCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECCCSSCEE-------
T ss_pred cCCCEEEEEeC-CCcEEEEEecCC--CCEEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEEecCCCCEE-------
Confidence 99999999996 667778887664 4799999999999999999999999999643 34444554443322
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224 679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 758 (1120)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 758 (1120)
.+.+.+++..+++++.|+.+++|+... .....+ .+|..
T Consensus 267 ----------------------------------~v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~~----~~h~~ 304 (577)
T 2ymu_A 267 ----------------------------------GVAFRPDGQTIASASDDKTVKLWNRNG----QLLQTL----TGHSS 304 (577)
T ss_dssp ----------------------------------EEEECTTSSEEEEEETTSCEEEEETTS----CEEEEE----CCCSS
T ss_pred ----------------------------------EEEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEEE----ecCCC
Confidence 234567889999999999999999653 122222 35889
Q ss_pred cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224 759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 838 (1120)
Q Consensus 759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~ 838 (1120)
.|.+++|+|++..+++++.|+.+++|+.... .... +. +|...+.+++|+|++++
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----------------------~~~~--~~--~~~~~v~~~~~s~~g~~ 358 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------HLQT--LT--GHSSSVWGVAFSPDGQT 358 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------EEEE--EC--CCSSCEEEEEECTTSSE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------------------eeEE--Ee--CCCCCEEEEEECCCCCE
Confidence 9999999999999999999999999986321 1111 12 27889999999999999
Q ss_pred EEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc
Q 001224 839 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 917 (1120)
Q Consensus 839 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 917 (1120)
+++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++|+.|+.|++||. +++.+..+.+|...|++++|+
T Consensus 359 l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s 435 (577)
T 2ymu_A 359 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS 435 (577)
T ss_dssp EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC
Confidence 99998 899999995 5678888999999999999999 9999999999999999995 577889999999999999999
Q ss_pred cCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccc
Q 001224 918 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV 996 (1120)
Q Consensus 918 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~ 996 (1120)
||+++|++++.|++|++||... ..+....+|. ..|.+++|+||+++|++ +.|+.|++||. +++++..+.
T Consensus 436 ~d~~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~ 505 (577)
T 2ymu_A 436 PDDQTIASASDDKTVKLWNRNG------QLLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 505 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTS------CEEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCC------CEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence 9999999999999999999754 2334445555 37999999999999999 48899999995 677777766
Q ss_pred cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCC
Q 001224 997 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1076 (1120)
Q Consensus 997 ~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg 1076 (1120)
+|...|++++|+|||++|++++.||.|+|||. +++.+..+. +|... |. +++|+| |+++|++++.||
T Consensus 506 --~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~~-v~--~~~fs~-dg~~l~s~~~D~ 571 (577)
T 2ymu_A 506 --GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSSS-VW--GVAFSP-DGQTIASASSDK 571 (577)
T ss_dssp --CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSSC-EE--EEEECT-TSSCEEEEETTS
T ss_pred --CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEEEeCCC
Confidence 88999999999999999999999999999996 677777766 44333 65 899999 689999999999
Q ss_pred cEEEEe
Q 001224 1077 GVHVFE 1082 (1120)
Q Consensus 1077 ~v~vW~ 1082 (1120)
+|++||
T Consensus 572 ~i~~Wd 577 (577)
T 2ymu_A 572 TVKLWN 577 (577)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.1e-65 Score=617.60 Aligned_cols=577 Identities=14% Similarity=0.129 Sum_probs=448.7
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
+.+.+.+++|+|||++ |++++ +++|+|||+.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 5678899999999995 77776 5799999998877655 4789999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC----CcEEEEECCCCceeEEeeccccCe
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV 518 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d----~~i~vwd~~~~~~~~~~~~h~~~v 518 (1120)
+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+|||+ .|++++.+ +.|++|| .+..+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 9999999999999765533 2236789999999999999999 57777654 3566665 677788899999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
.+++|+++.. ..|++++.|++|++||....+....+..|...|.+++|+|+|+ +|+++
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~---------------------~las~ 208 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---------------------LFAST 208 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC---------------------EEEEE
Confidence 9999976532 3699999999999999887666666777777777666666664 79999
Q ss_pred eCCCeEEEEECCCCceeEEEecC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccccccccc
Q 001224 599 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 673 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 673 (1120)
+.|++|++||+.+++.+..+... .|...|.+++|+|+|++|++++.|++|++||+.++ +....+..+....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~--- 284 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE--- 284 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG---
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc---
Confidence 99999999999999988887421 34558999999999999999999999999999887 3433332211000
Q ss_pred CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCC
Q 001224 674 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 753 (1120)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 753 (1120)
........++..+++++.|+.+++|+..... ....+
T Consensus 285 -------------------------------------~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~~---- 320 (611)
T 1nr0_A 285 -------------------------------------DQQLGIIWTKQALVSISANGFINFVNPELGS---IDQVR---- 320 (611)
T ss_dssp -------------------------------------GCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEEE----
T ss_pred -------------------------------------ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceEE----
Confidence 0001111256789999999999999976532 11111
Q ss_pred ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224 754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 833 (1120)
Q Consensus 754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s 833 (1120)
.+|...|.+++|+|+|++|++++.|+.|++||+.. +....... .+|...|.+++|+
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~----------------------~~~~~~~~--~~h~~~v~~~~~s 376 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVFP--DVHATMITGIKTT 376 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECSS--CSCSSCEEEEEEC
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----------------------Cceeeecc--cCCcceEEEEEEC
Confidence 45899999999999999999999999999998742 22222111 2388999999999
Q ss_pred cCCCEEEEEe-CCcEEEEEcCCCceeee---ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc
Q 001224 834 KNDSYVMSAS-GGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 909 (1120)
Q Consensus 834 ~d~~~l~~~s-dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 909 (1120)
+++. +++++ |+++++|++.++..... .........+++|+| ++.+++++ .++.+++|+ .++ +..+. |..
T Consensus 377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~ 449 (611)
T 1nr0_A 377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY 449 (611)
T ss_dssp TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence 8875 55555 99999999876543211 011234578899999 78777776 467899998 444 45554 888
Q ss_pred ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001224 910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 988 (1120)
Q Consensus 910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~ 988 (1120)
.+.+++|+|||++||+|+.|++|++||+.++... .... .+|. ..|.+++|+|||++|++ +.|+.|++|++.+
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~---~~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS---EVKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE---EEEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee---eeec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 8999999999999999999999999999875321 1122 3344 37999999999999999 4899999999988
Q ss_pred -ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee--eeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224 989 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus 989 -~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~--~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
+++.......+|...|.+++|+|||++|++|+.|++|+|||+.++... ..+. +|....|. +++|+| |
T Consensus 523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~-------~h~~~~v~--~v~fs~-d 592 (611)
T 1nr0_A 523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-------AHAMSSVN--SVIWLN-E 592 (611)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT-------SSTTSCEE--EEEEEE-T
T ss_pred CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc-------cCcccCee--EEEEcC-C
Confidence 666554233359999999999999999999999999999999887532 2222 44233366 899999 5
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 001224 1066 PNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1066 ~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
+. |++++.||+|++|++.
T Consensus 593 ~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 593 TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TE-EEEEETTSCEEEEECC
T ss_pred CE-EEEecCCCCEEEEecc
Confidence 66 9999999999999973
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.2e-62 Score=595.59 Aligned_cols=564 Identities=22% Similarity=0.355 Sum_probs=464.7
Q ss_pred hhcccCCCCCccccccccccccccccCCCCcC-----CCCcCCCCCCCCCcceee-eccCCCCceEEEEecCCCeEEEEE
Q 001224 310 LSKRTRPIGISDEINLPVNVLPVSFTGHSHSH-----SHSQAFSTPEDLPKTVTR-TLNQGSSPMSMDFHPVQQTLLLVG 383 (1120)
Q Consensus 310 ~~~r~~~~g~~~~v~~~v~~w~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~spdg~~lla~g 383 (1120)
+++|.|+.||++.| ..+.|++++... .....+|. ...+..+ +.+|.+.|++++|+|||+ +||+|
T Consensus 6 ~~e~~~L~GH~~~V------~~~a~spdg~~las~~~d~~v~iWd---~~~~~~~~l~gh~~~V~~l~fspdg~-~las~ 75 (577)
T 2ymu_A 6 VKERNRLEAHSSSV------RGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASA 75 (577)
T ss_dssp CCEEEEECCCSSCE------EEEEECTTSSCEEEEETTSEEEEEC---TTSCEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred cEEeeEECCCCCcE------EEEEECCCCCEEEEEeCCCEEEEEE---CCCCEEEEEeCCCCCEEEEEECCCCC-EEEEE
Confidence 45778899999999 888999988632 11233444 2334444 445999999999999999 59999
Q ss_pred eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeee
Q 001224 384 TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 463 (1120)
Q Consensus 384 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~ 463 (1120)
+.|++|+|||. +++.+. .+.+|...|.+++|+|||++|++++.|+.+++|+.......
T Consensus 76 ~~d~~i~vWd~-~~~~~~-------------------~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~-- 133 (577)
T 2ymu_A 76 SDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-- 133 (577)
T ss_dssp ETTSCEEEEET-TSCEEE-------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE--
T ss_pred eCCCEEEEEEC-CCCEEE-------------------EEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee--
Confidence 99999999996 455554 37789999999999999999999999999999998765432
Q ss_pred eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 543 (1120)
Q Consensus 464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 543 (1120)
...+|...|.++.|+|++. .+++++.++.+++|+. ..........|...|.++++.+ ++.+|++++.|+.|++
T Consensus 134 --~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~ 206 (577)
T 2ymu_A 134 --TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKL 206 (577)
T ss_dssp --EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEE
T ss_pred --eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEE
Confidence 4778999999999999999 6899999999999994 5556677788999999999854 5579999999999999
Q ss_pred EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC
Q 001224 544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 623 (1120)
Q Consensus 544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 623 (1120)
||.. .+....+..|...+.+++|+|++ .+|++++.|+.|++||. +++.+..+..+.
T Consensus 207 w~~~-~~~~~~~~~~~~~v~~~~~s~dg---------------------~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~- 262 (577)
T 2ymu_A 207 WNRN-GQLLQTLTGHSSSVRGVAFSPDG---------------------QTIASASDDKTVKLWNR-NGQLLQTLTGHS- 262 (577)
T ss_dssp ECTT-SCEEEEEECCSSCEEEEEECTTS---------------------SCEEEEETTSCEEEECT-TSCEEEEECCCS-
T ss_pred EeCC-CcEEEEEecCCCCEEEEEECCCC---------------------CEEEEEeCCCEEEEEeC-CCCEEEEEecCC-
Confidence 9964 34455566666666666665555 47999999999999996 567777777654
Q ss_pred CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001224 624 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 703 (1120)
Q Consensus 624 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1120)
..|.+++|+|+++.+++++.|+.|++|+... +....+.+|...+.
T Consensus 263 -~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~-------------------------------- 307 (577)
T 2ymu_A 263 -SSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVW-------------------------------- 307 (577)
T ss_dssp -SCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEE--------------------------------
T ss_pred -CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeE--------------------------------
Confidence 4799999999999999999999999999643 34445555544322
Q ss_pred ccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEE
Q 001224 704 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 783 (1120)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v 783 (1120)
...+.+++..+++++.|+.+++|++... ....+ .+|...+.+++|+|+++.+++++.++.+++
T Consensus 308 ---------~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 308 ---------GVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp ---------EEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ---------EEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE----eCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 2345678899999999999999997642 22222 347889999999999999999999999999
Q ss_pred eeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec
Q 001224 784 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 862 (1120)
Q Consensus 784 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~ 862 (1120)
|+.. +..+.. +. +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.
T Consensus 371 ~~~~-----------------------~~~~~~-~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~ 423 (577)
T 2ymu_A 371 WNRN-----------------------GQLLQT-LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 423 (577)
T ss_dssp EETT-----------------------CCEEEE-EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE
T ss_pred EcCC-----------------------CCEEEE-ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec
Confidence 9852 111111 22 2888999999999999999998 899999995 567888899
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccc
Q 001224 863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 942 (1120)
Q Consensus 863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~ 942 (1120)
+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||...
T Consensus 424 ~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--- 498 (577)
T 2ymu_A 424 GHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--- 498 (577)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS---
T ss_pred CCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC---
Confidence 9999999999999 8999999999999999996 5778889999999999999999999999999999999999643
Q ss_pred ccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc
Q 001224 943 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
.++....+|.. .|++++|+|||++|++ +.|+.|++||. +++++..+. +|.+.|++++|+|||++|++++.
T Consensus 499 ---~~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~ 569 (577)
T 2ymu_A 499 ---QLLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASS 569 (577)
T ss_dssp ---CEEEEEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEET
T ss_pred ---CEEEEEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeC
Confidence 24455566654 8999999999999999 58899999996 577777766 89999999999999999999999
Q ss_pred CCcEEEEE
Q 001224 1022 DATVCVFS 1029 (1120)
Q Consensus 1022 Dg~v~iwd 1029 (1120)
|++|++||
T Consensus 570 D~~i~~Wd 577 (577)
T 2ymu_A 570 DKTVKLWN 577 (577)
T ss_dssp TSCEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-61 Score=586.61 Aligned_cols=541 Identities=14% Similarity=0.184 Sum_probs=426.6
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
....+|.+.|++++|||||+ +||+|+.||+|+|||+.+++..... .+.+|.++|.+++|+||
T Consensus 53 ~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~-----------------~~~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 53 EIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKT-----------------TIPVFSGPVKDISWDSE 114 (611)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEE-----------------EEECSSSCEEEEEECTT
T ss_pred eEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeE-----------------eecccCCceEEEEECCC
Confidence 34456999999999999999 5999999999999999765533211 36689999999999999
Q ss_pred CCeEEEEECC----CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeec
Q 001224 438 GSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 513 (1120)
Q Consensus 438 g~~las~~~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 513 (1120)
|++||+++.+ +.|++|| +++... .+.+|.+.|++++|+|++.. .|++|+.|++|++||..+++++.++.+
T Consensus 115 g~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~ 188 (611)
T 1nr0_A 115 SKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGE 188 (611)
T ss_dssp SCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECC
T ss_pred CCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeecc
Confidence 9999998875 3677776 444443 68899999999999999874 599999999999999999999999999
Q ss_pred cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee-------CCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224 514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-------APGRWCTTMAYSADGTRTYQGFRKRSLGVV 586 (1120)
Q Consensus 514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~ 586 (1120)
|...|.+++|++ ++.+|++++.|++|++||+.+++....+. .|...| ..+
T Consensus 189 H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V---------------------~~v 245 (611)
T 1nr0_A 189 HTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV---------------------FGL 245 (611)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE---------------------EEE
T ss_pred ccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE---------------------EEE
Confidence 999999999965 56899999999999999998876655542 344444 445
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC-CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccc
Q 001224 587 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 665 (1120)
Q Consensus 587 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 665 (1120)
+|+|++++|++++.|++|++||+.+++.+..+..+.. ......+.| ++..+++++.|+.+++|+...+ .....+.+
T Consensus 246 ~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~g 322 (611)
T 1nr0_A 246 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG-SIDQVRYG 322 (611)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT-EEEEEECC
T ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC-CcceEEcC
Confidence 5555556899999999999999999999888864321 112334555 7889999999999999998876 45555556
Q ss_pred ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcc
Q 001224 666 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 745 (1120)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 745 (1120)
|...+. .+.++++++++++++.|++|++||+.+.....
T Consensus 323 h~~~v~-----------------------------------------~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~- 360 (611)
T 1nr0_A 323 HNKAIT-----------------------------------------ALSSSADGKTLFSADAEGHINSWDISTGISNR- 360 (611)
T ss_dssp CSSCEE-----------------------------------------EEEECTTSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred CCCCEE-----------------------------------------EEEEeCCCCEEEEEeCCCcEEEEECCCCceee-
Confidence 654332 24466789999999999999999998643211
Q ss_pred ceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCC
Q 001224 746 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 825 (1120)
Q Consensus 746 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 825 (1120)
....+|...|.+++|++++ .+++++.|+.+++|+......... ..... ....
T Consensus 361 -----~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~-----~~~~ 412 (611)
T 1nr0_A 361 -----VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVAN-----KLSS 412 (611)
T ss_dssp -----CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEE-----ECSS
T ss_pred -----ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeee-----ecCC
Confidence 1123588999999999876 588999999999998743221100 00000 0233
Q ss_pred CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee--eEe
Q 001224 826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSK 903 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~--~~~ 903 (1120)
...+++++|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++||+|+.|+.|++||+.+++. +..
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~ 487 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT 487 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec
Confidence 46789999999999888899999999 334 45554 778899999999 999999999999999999987653 234
Q ss_pred ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC-cccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeE
Q 001224 904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQL 981 (1120)
Q Consensus 904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v 981 (1120)
.+|...|++++|+|||++|++++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++||+ +.|+.|
T Consensus 488 -~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 488 -IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp -EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCE
T ss_pred -cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcE
Confidence 67999999999999999999999999999999987 332111 0122354 48999999999999999 589999
Q ss_pred EEEEcCCceeeeccccCCC-CCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224 982 AIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 982 ~i~d~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
++||+.++.........+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 561 ~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 561 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 9999988753221123478 89999999999999 9999999999999973
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-60 Score=634.23 Aligned_cols=597 Identities=15% Similarity=0.164 Sum_probs=492.0
Q ss_pred eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224 359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 438 (1120)
Q Consensus 359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 438 (1120)
...+|.+.|++++|||||+ ++++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCC
Confidence 4456999999999999999 499999999999999999987763 67899999999999999
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 518 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v 518 (1120)
++||+|+.|+.|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999998665 67899999999999997655589999999999999999999999999999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC-------------CCCceeEEEEcCCCCeEEec--------
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-------------PGRWCTTMAYSADGTRTYQG-------- 577 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~g~~~~~~-------- 577 (1120)
.+++|++ ++.++++++.||.|++||+.+......+.. ....+.+++|+|+|..++.+
T Consensus 747 ~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 747 NHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp EEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred EEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 9999865 457999999999999999988765544432 12367888999999855443
Q ss_pred -------------ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC
Q 001224 578 -------------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 644 (1120)
Q Consensus 578 -------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 644 (1120)
.+...+..++|+|++..+++++.||.|++||+.++..+..+..|. ..|.+++|+|+|+++++++.
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEECCCCCEEEEEeC
Confidence 334577889999999999999999999999999999998887664 47999999999999999999
Q ss_pred CCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCccee
Q 001224 645 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 724 (1120)
Q Consensus 645 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 724 (1120)
||.|++|++.+.... ....... .....+.+....++
T Consensus 903 dg~v~vw~~~~~~~~-~~~~~~~-------------------------------------------~~~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKN-SAIVLKQ-------------------------------------------EIDVVFQENETMVL 938 (1249)
T ss_dssp TSCEEEEEHHHHHSC-CSSSEEE-------------------------------------------EEEEEEETTEEEEE
T ss_pred CCeEEEEEcccccee-eeecccc-------------------------------------------eeeEEEcCCCcEEE
Confidence 999999998654111 1100000 00111223344555
Q ss_pred eccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCce
Q 001224 725 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 804 (1120)
Q Consensus 725 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 804 (1120)
.....+.+.++...... .. ..+...+.+++|+|+++.+++++.+|.|++|++..
T Consensus 939 ~~~~~~~~~~~~~~~~~----~~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~---------------- 992 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQ----ID------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---------------- 992 (1249)
T ss_dssp EEESSSSEEEEEESSCC----EE------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT----------------
T ss_pred EecCCcceEEEecCcce----EE------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC----------------
Confidence 55666666666654321 11 11456799999999999999999999999998732
Q ss_pred eecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEE
Q 001224 805 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 883 (1120)
Q Consensus 805 ~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las 883 (1120)
+..... +. +|...|.+++|+|+++++++++ ||.|++||+.+++... +..|...|.+++|+| ++ .+++
T Consensus 993 ------~~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~ 1060 (1249)
T 3sfz_A 993 ------NRVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLS 1060 (1249)
T ss_dssp ------TSCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEE
T ss_pred ------Cceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEE
Confidence 222211 22 3889999999999999999998 9999999999987764 557899999999999 66 5678
Q ss_pred EeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcE
Q 001224 884 GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 963 (1120)
Q Consensus 884 g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 963 (1120)
++.||.|++||+.+++....+.+|.+.|++++|+||+++|++++.|++|++||+.+++. .....+|. ..|.+
T Consensus 1061 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~ 1132 (1249)
T 3sfz_A 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRC 1132 (1249)
T ss_dssp EESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEE
T ss_pred EECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEE
Confidence 89999999999999999999999999999999999999999999999999999988653 34455555 37999
Q ss_pred EEEccCCcEEEEE-eCCeEEEEEcCCceeeeccc-------cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224 964 VQFHQDQIHFLVV-HETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus 964 ~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~-------~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
++|+|+|++|+++ .|+.|++||+.+++.+..+. ..+|.+.|++++|+|||++|++++ |.|++||+.+++.
T Consensus 1133 ~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBC
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCce
Confidence 9999999999995 78999999999998877651 136889999999999999999885 9999999999998
Q ss_pred eeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1036 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1036 ~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
+..+. +| ...+. +++|+| |+.+|++++.||.|++|++.+
T Consensus 1211 ~~~~~-------~~-~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1211 SQTFY-------TN-GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp CCCCC-------CS-SCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred eeeee-------cc-CCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 86654 22 22254 789999 689999999999999999853
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.6e-58 Score=561.78 Aligned_cols=563 Identities=12% Similarity=0.147 Sum_probs=455.7
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC----ceeEeeceeeeccCCCCcccccccccCCCCc-eEEEEEcC
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP 436 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l~~sp 436 (1120)
.|.+.|++++|||||++ |++|+ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 37899999999999995 77776 799999999987 5554 37889999 99999999
Q ss_pred --CCCeEEEEECCCeEEEEEccCCc-----eeeeeeeecccccCeEEEEEcCCCCceEEEEecCC----CcEEEEECCCC
Q 001224 437 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG 505 (1120)
Q Consensus 437 --dg~~las~~~dg~v~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d----~~i~vwd~~~~ 505 (1120)
++++||+|+.||.|+|||+.+++ .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| .+
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence 99999999999999999998651 1223346788999999999999999 68888877 6777887 77
Q ss_pred ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCC---ceeEEEEcCCCCeEEecccccc
Q 001224 506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKRS 582 (1120)
Q Consensus 506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~~~~~~~~ 582 (1120)
+.+..+.+|...|.+++|+++.. ..+++++.|+.|++||+.+.+....+..|.. .+.+++|+|++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------- 218 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS----------- 218 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT-----------
T ss_pred CcceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC-----------
Confidence 88999999999999999976542 3899999999999999988777666666665 56665555550
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC--CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224 583 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 583 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
+++|++++.||.|++||+.+++.+..+... .+...|.+++|+ ++.+|++++.|+.|++||+.++ +..
T Consensus 219 ---------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~ 287 (615)
T 1pgu_A 219 ---------GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCV 287 (615)
T ss_dssp ---------CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEE
T ss_pred ---------CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEE
Confidence 458999999999999999999998888311 234479999999 9999999999999999999887 444
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
..+..+...... .......+++..+++++.++.+++||+...
T Consensus 288 ~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 288 QKWTLDKQQLGN--------------------------------------QQVGVVATGNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp EEEECCTTCGGG--------------------------------------CEEEEEEEETTEEEEEETTSCEEEEETTEE
T ss_pred EEEcCCCCcccC--------------------------------------ceeEEEeCCCCeEEEEECCCCEEEEECCCC
Confidence 444333111000 000111236789999999999999998762
Q ss_pred CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224 741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820 (1120)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 820 (1120)
.. ...+ .+|...|.+++| |+ +++++.||.|++|++. .+ .
T Consensus 330 ~~---~~~~----~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~----~- 368 (615)
T 1pgu_A 330 EV---LKTI----SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------SM----H- 368 (615)
T ss_dssp EE---EEEE----CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------EE----E-
T ss_pred cE---EEEE----eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------hh----c-
Confidence 21 1122 358899999999 88 9999999999999862 01 1
Q ss_pred CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224 821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 899 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 899 (1120)
..|...|.+++| +++..+++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+++|++.+++
T Consensus 369 ~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~ 438 (615)
T 1pgu_A 369 QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGD 438 (615)
T ss_dssp CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCC
T ss_pred CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCc
Confidence 238899999999 6677777877 9999999987655432 688999999 88888877 78999999998898
Q ss_pred eeEeecccccceEEEEEccCCCEEEEEeC-CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e
Q 001224 900 VKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H 977 (1120)
Q Consensus 900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~ 977 (1120)
.+..+. |...+++++|+ +++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|+|++|+++ .
T Consensus 439 ~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 439 IIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEET
T ss_pred eeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcCC
Confidence 888877 88999999999 889999999 9999999999854311 3444444 489999999999999995 8
Q ss_pred CCeEEEEEcCCceeeeccccCC-CCCCeeEEEECC----------CCcEEEEEEcCCcEEEEEcCCc-ceeeeeCCCccc
Q 001224 978 ETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINPSAYL 1045 (1120)
Q Consensus 978 d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~----------dg~~l~s~~~Dg~v~iwd~~~~-~~~~~~~~~~~~ 1045 (1120)
|+.|++||+.+++++..+. + |...|++++|+| ++++|++++.||.|++||+.++ +.+..+.
T Consensus 509 dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----- 581 (615)
T 1pgu_A 509 MGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN----- 581 (615)
T ss_dssp TSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-----
T ss_pred CCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh-----
Confidence 8999999999999988765 4 899999999999 9999999999999999999998 6666655
Q ss_pred CCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1046 PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1046 ~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
+|.. .|. +++|+| |+. |++++.||.|++|++..
T Consensus 582 --~h~~-~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 582 --AHKD-GVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp --SSTT-CEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred --cCcc-ceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 3323 355 899999 577 99999999999999875
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-56 Score=595.38 Aligned_cols=568 Identities=17% Similarity=0.215 Sum_probs=466.2
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+.+|.+.|++++|||||++||+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|+.|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 477999999999999999999999999999999999998665 6889999999999999999 79999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 580 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 580 (1120)
|+.+++++..+.+|...|.+++|++..++.++++|+.|+.|++||+.+......+..|...|.+++|+|++
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~--------- 755 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD--------- 755 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---------
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---------
Confidence 99999999999999999999999887777899999999999999999988777777777777777666666
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC-----------CCCCcCeEEEcCCCCEEEEEECCCcEE
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK 649 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~dg~i~ 649 (1120)
+++++++.||.|++||+.+++....+.... ....+.+++|+|+|+.+++++ ++.+.
T Consensus 756 ------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~ 822 (1249)
T 3sfz_A 756 ------------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL 822 (1249)
T ss_dssp ------------TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred ------------CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence 479999999999999999988777765321 123588999999999999987 68999
Q ss_pred EEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCC
Q 001224 650 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 729 (1120)
Q Consensus 650 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 729 (1120)
+||+.++........+|...+ ....+.+++..+++++.+
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v-----------------------------------------~~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTI-----------------------------------------QYCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCC-----------------------------------------CEEEECSSTTEEEEECSS
T ss_pred EEEecCCCceeEEcCCCCCce-----------------------------------------EEEEEcCCCCEEEEEeCC
Confidence 999988733322222332221 134566788999999999
Q ss_pred CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCc-------------
Q 001224 730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK------------- 796 (1120)
Q Consensus 730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~------------- 796 (1120)
+.+++|++...... ..+ .+|...|.+++|+|+|+.+++++.||.+++|++..........
T Consensus 862 g~v~vwd~~~~~~~---~~~----~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 862 YCVELWNIDSRLKV---ADC----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp SCEEEEETTTTEEE---EEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred CeEEEEEcCCCcee---eec----CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 99999999863221 111 3588999999999999999999999999999986432111000
Q ss_pred -ccc----ccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEE
Q 001224 797 -ATA----SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF 870 (1120)
Q Consensus 797 -~~~----~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 870 (1120)
... ...+.++...++..... +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 000 01223344444443322 466799999999999999999 899999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeec
Q 001224 871 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 950 (1120)
Q Consensus 871 l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~ 950 (1120)
++|+| ++++|++|+.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++. ...
T Consensus 1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~ 1080 (1249)
T 3sfz_A 1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERD 1080 (1249)
T ss_dssp EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEE
T ss_pred EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce-----eEE
Confidence 99999 8999999999999999999998865 466899999999999975 678899999999999998654 233
Q ss_pred cCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224 951 PTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus 951 ~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
..+|. ..|.+++|+|+|++++++ .|+.|++||+.+++++..+. +|...|++++|+|||++|++|+.||.|++||
T Consensus 1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 34444 378999999999999995 89999999999999887765 8899999999999999999999999999999
Q ss_pred cCCcceeeeeCCCcccC--CCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001224 1030 AANLKLRCRINPSAYLP--AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1088 (1120)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~--~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1088 (1120)
+.+++.+..+.+..... .+| ...|. +++|+| |+.+|++++ |.|++||+.+++.
T Consensus 1156 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1156 VSDGQLLHSCAPISVEEGTATH-GGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp SSSSCCCCCCCCCC-------C-CSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred CCCCceEEEecccccccccccc-CceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 99999887653222111 122 23355 899999 689999886 9999999999884
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-55 Score=554.49 Aligned_cols=628 Identities=10% Similarity=0.089 Sum_probs=435.2
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
....+|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34567999999999999999 59999999999999998776543 234788999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee---------
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--------- 508 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~--------- 508 (1120)
|++|++++.|++|+|||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||.|++||+.++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999988665 343 678999999999999 7999999999999999988764
Q ss_pred --EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCC--eEEeccccccee
Q 001224 509 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSLG 584 (1120)
Q Consensus 509 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~~~~~i~ 584 (1120)
..+.+|.+.|.+++|++. ++..+++|+.||.| +||+++.+....+..+... ..+.+. .....++...+.
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP-----FAPGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT-----TCCCSTTCCCTTSCBCCCEE
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCC-----cCCCcccccccccccCCCeE
Confidence 234679999999999874 33689999999999 9999987666555443100 000000 000111234678
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEe-----cCC-----------CCCCcCeEEEc----CCC-CEEEEEE
Q 001224 585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-----------GLPASPRIRFN----KDG-CLLAVST 643 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-----------~~~~v~~~~~s----~~~-~~l~~~~ 643 (1120)
+++|+|++.+|++++.||.|++||+.+++++.... .+. +...|.+++|+ |++ .++++|+
T Consensus 216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 88888888899999999999999999998776422 121 23368999995 443 5677776
Q ss_pred CC-----CcEEEEEccCcchh-------h-hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCC-
Q 001224 644 ND-----NGIKILATSDGIRL-------L-RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG- 709 (1120)
Q Consensus 644 ~d-----g~i~iwd~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 709 (1120)
.+ +.+.+|++...... . ..+...... ... .+. ..........
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~------~~~-----------------~~~~v~~~~~~ 351 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM-KIF------PLP-----------------TNVPIVNILPI 351 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE-EEE------CCS-----------------SSSCEEEEEEC
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccce-EEE------ecC-----------------CCCceEEEEEC
Confidence 65 37888885311000 0 000000000 000 000 0000000000
Q ss_pred --CCCcccccCCCcceeeccCCCcceeeecccCCCCccc----eee------------------------------ccCC
Q 001224 710 --MNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC----RSL------------------------------RLPE 753 (1120)
Q Consensus 710 --~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~----~~~------------------------------~~~~ 753 (1120)
.........+...+++++.|+.+++|++......... ..+ ..+-
T Consensus 352 ~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l 431 (902)
T 2oaj_A 352 PRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLL 431 (902)
T ss_dssp CSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSC
T ss_pred CCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcc
Confidence 0000011124457788888999999998543211000 000 0011
Q ss_pred ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224 754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 833 (1120)
Q Consensus 754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s 833 (1120)
.+|...+..++|+|+++.+++++.|++|++||+........ .++... ... ....+|...|.+++|+
T Consensus 432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~---------~~~~~~----l~~-~~~~~h~~~V~svafs 497 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN---------ASFEVN----LSR-TLNKAKELAVDKISFA 497 (902)
T ss_dssp CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------BCEEEE----HHH-HTTCSSSCCEEEEEEE
T ss_pred cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------ceEEee----chh-hcCCCCCCceeEEEec
Confidence 23445555667789999999999999999999855421000 000000 000 0011488999999999
Q ss_pred cCCCEEEEEe-CCcEEEEEcCCCc---------------------------------------------eeeeecCCCCC
Q 001224 834 KNDSYVMSAS-GGKISLFNMMTFK---------------------------------------------TMATFMPPPPA 867 (1120)
Q Consensus 834 ~d~~~l~~~s-dg~i~vwd~~~~~---------------------------------------------~~~~~~~~~~~ 867 (1120)
||+++||+|+ ||+|+|||+.+++ ++.++.+|.+.
T Consensus 498 pdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~ 577 (902)
T 2oaj_A 498 AETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK 577 (902)
T ss_dssp TTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS
T ss_pred CCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc
Confidence 9999999999 9999999997652 36778889999
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE-----eec-ccccceEEEEEc-----cCC---CEEEEEeCCCCEE
Q 001224 868 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-----KLK-GHSKRITGLAFS-----HAL---NVLVSSGADSQLC 933 (1120)
Q Consensus 868 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~d~---~~l~s~s~Dg~v~ 933 (1120)
|++|+||| || +||+|+.|++|+|||+.+...+. .+. +|.+.|++|+|+ ||| ++|++|+.|++|+
T Consensus 578 V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 578 TSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp EEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred EEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 99999999 88 99999999999999998876653 343 899999999999 886 8999999999999
Q ss_pred EEEC---CCcccccceeeeccCCCCCC--CCCCcEEE-Ec----------------------cCCcEEEEEeCCeEEEEE
Q 001224 934 VWSS---DGWEKQKNRFLQIPTGRTPT--AQSDTRVQ-FH----------------------QDQIHFLVVHETQLAIFE 985 (1120)
Q Consensus 934 iWd~---~~~~~~~~~~~~~~~~~~~~--~~~i~~~~-fs----------------------pdg~~la~~~d~~v~i~d 985 (1120)
+||+ .+|+. ...+.+|... ...|..++ |+ ++|..|+++ +..++||+
T Consensus 656 ~wd~~p~~~g~~-----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~ 729 (902)
T 2oaj_A 656 TYKILPASGGKF-----DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLIT 729 (902)
T ss_dssp EEEEEECGGGCE-----EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEEC
T ss_pred EEEEecCCCCcE-----EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEe
Confidence 9999 55543 2222222100 13556665 55 456555555 88999999
Q ss_pred cCCceeeeccccCCCCCCeeEE---E------ECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccc
Q 001224 986 TTKLECVKQWVPRESSAPITHA---T------FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1056 (1120)
Q Consensus 986 ~~~~~~~~~~~~~~h~~~v~~l---~------~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 1056 (1120)
+.++++.+... .|...+.++ . |++++..|++++.||+|++|++.+++.+..+........ . ..
T Consensus 730 ~~~~k~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~----~--~~ 801 (902)
T 2oaj_A 730 LGKSKSTHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAA----K--YI 801 (902)
T ss_dssp TTCCCEEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCH----H--HH
T ss_pred CccccceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccccc----c--cc
Confidence 99999987764 455666666 5 788999999999999999999999999988773221110 0 11
Q ss_pred eEEEecCCCCCEEEEEeCC
Q 001224 1057 LVIAAHPQEPNEFALGLSD 1075 (1120)
Q Consensus 1057 ~~i~~~p~d~~~l~s~~~D 1075 (1120)
....|.+ .|+.++-.+..
T Consensus 802 ~~~~~~~-~G~~~~~~~~~ 819 (902)
T 2oaj_A 802 TESSVLR-NGDIAIRVSEF 819 (902)
T ss_dssp TTCEECT-TSCEEEECSSS
T ss_pred cceEEcC-CCCEEEEeChh
Confidence 1456776 47776655533
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.1e-55 Score=535.50 Aligned_cols=524 Identities=13% Similarity=0.159 Sum_probs=437.4
Q ss_pred cceeeeccCCCC-ceEEEEec--CCCeEEEEEeCCCcEEEEecCCC------ceeEeeceeeeccCCCCcccccccccCC
Q 001224 355 KTVTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR------ERLVLRNFKVWDLGACSMPLQAALVKDP 425 (1120)
Q Consensus 355 ~~~~~~~~h~~~-v~~v~~sp--dg~~lla~g~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~h 425 (1120)
.....+.+|... |++++|+| +++ +|++|+.||+|+|||+.++ +.... ..+.+|
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-----------------~~~~~~ 115 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVK-----------------SEFQVL 115 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEE-----------------EEEECC
T ss_pred ccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCccccccccccc-----------------chhhcc
Confidence 344555669999 99999999 999 5999999999999999765 21111 136679
Q ss_pred CCceEEEEEcCCCCeEEEEECC----CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224 426 GVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 501 (1120)
Q Consensus 426 ~~~V~~l~~spdg~~las~~~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd 501 (1120)
...|.+++|+|+|++|++++.+ +.|.+|| .++.+. .+.+|...|.+++|+|+++. ++++++.|+.|++||
T Consensus 116 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd 189 (615)
T 1pgu_A 116 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQ 189 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEE
T ss_pred cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEe
Confidence 9999999999999999999988 6888888 444443 68899999999999999975 699999999999999
Q ss_pred CCCCceeEEeecccc---CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-e---CCCCceeEEEEcCCCCeE
Q 001224 502 ATNGAKQYIFEGHEA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-E---APGRWCTTMAYSADGTRT 574 (1120)
Q Consensus 502 ~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~g~~~ 574 (1120)
+.+++.+..+.+|.. .|.+++|+++ ++.+|++++.||.|++||+.+.+....+ . .|...+.+++|+ ++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~--- 264 (615)
T 1pgu_A 190 GPPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS--- 264 (615)
T ss_dssp TTTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS---
T ss_pred CCCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC---
Confidence 999999999999999 9999999654 1579999999999999999987776666 4 566666666655 44
Q ss_pred EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC--CCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224 575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILA 652 (1120)
Q Consensus 575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 652 (1120)
.+|++++.||.|++||+.+++.+..+..+.. ...+.++.|+ ++.++++++.||.|++||
T Consensus 265 ------------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d 325 (615)
T 1pgu_A 265 ------------------QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYE 325 (615)
T ss_dssp ------------------SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred ------------------CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEE
Confidence 5899999999999999999999988876521 1346677775 899999999999999999
Q ss_pred ccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcc
Q 001224 653 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 732 (1120)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 732 (1120)
+.++ +....+.+|...+. ...+ ++ +++++.|+.+
T Consensus 326 ~~~~-~~~~~~~~~~~~v~-----------------------------------------~~~~-~~---l~~~~~dg~i 359 (615)
T 1pgu_A 326 LGHD-EVLKTISGHNKGIT-----------------------------------------ALTV-NP---LISGSYDGRI 359 (615)
T ss_dssp TTEE-EEEEEECCCSSCEE-----------------------------------------EEET-TT---TEEEETTSCE
T ss_pred CCCC-cEEEEEeCCCCCEE-----------------------------------------EEEe-cC---cEEECCCCeE
Confidence 9876 55566665554332 1223 33 8999999999
Q ss_pred eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224 733 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 812 (1120)
Q Consensus 733 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 812 (1120)
++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++.....
T Consensus 360 ~~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~--------------------- 405 (615)
T 1pgu_A 360 MEWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF--------------------- 405 (615)
T ss_dssp EETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC---------------------
T ss_pred EEEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc---------------------
Confidence 999987 111 348899999999 6677899999999999998743221
Q ss_pred cccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC-CCcEE
Q 001224 813 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQ 891 (1120)
Q Consensus 813 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~ 891 (1120)
...+.+++++|++.+++++.++.+++|++.+++.+..+. +...+.+++|+ +++|++|+. ||.|+
T Consensus 406 -----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 406 -----------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQ 470 (615)
T ss_dssp -----------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEE
T ss_pred -----------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEE
Confidence 125778999999999998889999999999999888887 78899999998 679999999 99999
Q ss_pred EEEeecceee-EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCC-CCCCCCCCcEEEEcc-
Q 001224 892 IYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ- 968 (1120)
Q Consensus 892 vwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fsp- 968 (1120)
+||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++. +....+ |. ..|++++|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~---~~v~~~~~sp~ 542 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRT---SKINAISWKPA 542 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCS---SCEEEEEECCC
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCC---CceeEEEEcCc
Confidence 9999988766 77889999999999999999999999999999999998653 344444 54 4899999999
Q ss_pred ---------CCcEEEEE-eCCeEEEEEcCCc-eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224 969 ---------DQIHFLVV-HETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 969 ---------dg~~la~~-~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
++++|+++ .|+.|++||+.++ +++..+. +|...|++++|+||++ |++++.||.|++|++.+
T Consensus 543 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 543 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp C------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999995 7899999999998 6666654 8899999999999999 99999999999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-53 Score=537.00 Aligned_cols=593 Identities=11% Similarity=0.090 Sum_probs=418.0
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 501 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd 501 (1120)
..+|.+.|++++|+|+|++||+|+.||+|+||+..+.+... . ..|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~---~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI---K-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE---E-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE---E-cCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45799999999999999999999999999999998866443 2 35788999999999 77 799999999999999
Q ss_pred CCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCc-----------eeeeCCCCceeEEEEcCC
Q 001224 502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-----------VDYEAPGRWCTTMAYSAD 570 (1120)
Q Consensus 502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 570 (1120)
+.+++++..+. |.+.|++++|++ ++.+|++|+.||.|++||+++.... ..+..|...
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~--------- 153 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP--------- 153 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC---------
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC---------
Confidence 99999999887 778999999864 5579999999999999999875432 111233344
Q ss_pred CCeEEecccccceeEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeEEEecC----------------CCCCCcCeEEEc
Q 001224 571 GTRTYQGFRKRSLGVVQFDTT-KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------GGLPASPRIRFN 633 (1120)
Q Consensus 571 g~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~v~~~~~s 633 (1120)
+.+++|+|+ +..+++|+.||.| +||+++++.+..+..+ .+...|.+++|+
T Consensus 154 ------------V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 154 ------------IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp ------------CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred ------------eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 444555553 2578999999999 9999999998888755 112469999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCcchhhh--hcc---cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001224 634 KDGCLLAVSTNDNGIKILATSDGIRLLR--TFE---NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 708 (1120)
Q Consensus 634 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1120)
|+|++|++++.||.|++||+.++ +.+. .+. .|... ...+.. .+.. ..+ ..
T Consensus 221 pdg~~lasgs~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~-~~~~~~---~~~~-----------------~~~---V~ 275 (902)
T 2oaj_A 221 PNSLHIITIHEDNSLVFWDANSG-HMIMARTVFETEINVPQ-PDYIRD---SSTN-----------------AAK---IS 275 (902)
T ss_dssp TTSSEEEEEETTCCEEEEETTTC-CEEEEECSSCSCTTSCC-TTCCCC---CSSC-----------------CCE---EE
T ss_pred CCCCEEEEEECCCeEEEEECCCC-cEEEEEeecccccCCCC-CcCCCC---Cccc-----------------cCC---ee
Confidence 99999999999999999999887 3322 121 11100 000000 0000 000 00
Q ss_pred CCCCcccccCCC-cceeeccCC-----CcceeeecccCCC---------------CccceeeccCCccccccEEEEEEcC
Q 001224 709 GMNGDVRSLADV-KPRITEESN-----DKSKVWKLTELSE---------------PNQCRSLRLPENLRATKISRLIFTN 767 (1120)
Q Consensus 709 ~~~~~~~~~~~~-~~l~~~~~d-----~~i~vw~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~l~~s~ 767 (1120)
.+.......+++ ..+++++.+ ..+.+|++..... ....+.+.. .+...|..+.+.+
T Consensus 276 ~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~ 352 (902)
T 2oaj_A 276 KVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL---PTNVPIVNILPIP 352 (902)
T ss_dssp EEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC---SSSSCEEEEEECC
T ss_pred EEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec---CCCCceEEEEECC
Confidence 000001112343 456666554 3678888542100 001111111 2456788888765
Q ss_pred ----------CCceEEEeccCceEEEeeecccccCCCC----cc------------ccccCceeecCC---CCCcccccC
Q 001224 768 ----------SGNAILALASNAIHLLWKWQRTERNSSG----KA------------TASVAPQLWQPP---SGIMMTNDV 818 (1120)
Q Consensus 768 ----------~g~~l~~~~~dg~i~vw~~~~~~~~~~~----~~------------~~~~~~~~w~~~---~g~~~~~~~ 818 (1120)
+...+++++.||.+++|++..+...... .. .......+|+.. .+.. ...+
T Consensus 353 ~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~~l 431 (902)
T 2oaj_A 353 RQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK-DYLL 431 (902)
T ss_dssp SSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CCSC
T ss_pred CCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC-CCcc
Confidence 3346888889999999998543211000 00 000011233311 0111 1123
Q ss_pred CCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCcee--eee---------cCCCCCeEEEEEecCCCcEEEEEeC
Q 001224 819 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF---------MPPPPAATFLAFHPQDNNIIAIGMD 886 (1120)
Q Consensus 819 ~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~--~~~---------~~~~~~i~~l~~sp~d~~~lasg~~ 886 (1120)
. +|...+.+++|+|+++++++|+ |++|++||+.++... ..+ .+|...|.+++|+| |+++||+|+.
T Consensus 432 ~--G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~ 508 (902)
T 2oaj_A 432 K--GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIE 508 (902)
T ss_dssp C--CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEET
T ss_pred c--CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEec
Confidence 3 3777888899999999999999 999999999887432 111 17888999999999 9999999999
Q ss_pred CCcEEEEEeecc---------------------------------------------eeeEeecccccceEEEEEccCCC
Q 001224 887 DSSIQIYNVRVD---------------------------------------------EVKSKLKGHSKRITGLAFSHALN 921 (1120)
Q Consensus 887 dg~v~vwd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~s~d~~ 921 (1120)
||+|+||++.++ +++..+.+|.+.|++|+|||||
T Consensus 509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG- 587 (902)
T 2oaj_A 509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG- 587 (902)
T ss_dssp TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-
T ss_pred CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-
Confidence 999999999876 2467888999999999999999
Q ss_pred EEEEEeCCCCEEEEECCCcccccceeeeccC-CCCCCCCCCcEEEEc-----cCC---cEEEE-EeCCeEEEEEc---CC
Q 001224 922 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFH-----QDQ---IHFLV-VHETQLAIFET---TK 988 (1120)
Q Consensus 922 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~fs-----pdg---~~la~-~~d~~v~i~d~---~~ 988 (1120)
+||+|+.|++|+|||+++........+..+. +|. ..|++++|+ ||| ++|++ +.|+.|++||+ .+
T Consensus 588 ~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~ 664 (902)
T 2oaj_A 588 FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASG 664 (902)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGG
T ss_pred EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCC
Confidence 9999999999999999875432111122333 565 489999999 886 88888 58999999999 88
Q ss_pred ceeeeccccC---CCCCCeeEEE-EC----------------------CCCcEEEEEEcCCcEEEEEcCCcceeeeeCCC
Q 001224 989 LECVKQWVPR---ESSAPITHAT-FS----------------------CDSQLVYACFLDATVCVFSAANLKLRCRINPS 1042 (1120)
Q Consensus 989 ~~~~~~~~~~---~h~~~v~~l~-~s----------------------~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~ 1042 (1120)
|++...+... .|.++|.+++ |+ +++.+|+++ +..|+||++.+++..++..
T Consensus 665 g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-- 740 (902)
T 2oaj_A 665 GKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-- 740 (902)
T ss_dssp GCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC--
T ss_pred CcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc--
Confidence 8887776521 1357888887 66 556555554 7899999999999887653
Q ss_pred cccCCCCCCCCccceEE---E------ecCCCCCEEEEEeCCCcEEEEecCCCC--CCCCCCCC
Q 001224 1043 AYLPAGVSSSNVHPLVI---A------AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVPPP 1095 (1120)
Q Consensus 1043 ~~~~~g~~~~~v~~~~i---~------~~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~~p 1095 (1120)
+|. ..+. ++ . |++ ++..|++++.||+|++|++.+.+ .....+++
T Consensus 741 -----~~~-~~~~--~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~ 795 (902)
T 2oaj_A 741 -----KYP-LAAT--GLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPFP 795 (902)
T ss_dssp -----SSC-EEEE--EEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred -----ccc-eeee--EEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCcc
Confidence 111 1122 33 5 667 57899999999999999999998 44444443
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.7e-45 Score=466.62 Aligned_cols=465 Identities=17% Similarity=0.227 Sum_probs=371.9
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
+.+|.+.|++++|||+|+ +|++|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+|+|+
T Consensus 9 ~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIARKN 68 (814)
T ss_dssp EEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGT
T ss_pred eecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeCCCC
Confidence 445999999999999999 499999999999999999887763 678999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeeccccCe
Q 001224 440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 518 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v 518 (1120)
+||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ ++++++.||.|++||+.++ .....+.+|...|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 143 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred EEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE
Confidence 99999999999999999988665 6788999999999999999 7999999999999999987 7778889999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC--CCCEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT--TKNRFL 596 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~--~~~~l~ 596 (1120)
.+++|++. ++..+++++.||.|++||+........+..+. ...+..++|+| ++.+++
T Consensus 144 ~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------------------ERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCC--------------------TTCCCEEEECCSTTCCEEE
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCC--------------------CCCEEEEEEEECCCCCEEE
Confidence 99999752 45799999999999999998766655544332 12444455555 567899
Q ss_pred EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCC
Q 001224 597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 676 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1120)
+++.||.|++||+.+++.+..+..+. ..|.+++|+|++.++++++.||.|++||+.++ .....+
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~------------- 266 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL------------- 266 (814)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEE-------------
T ss_pred EEeCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-------------
Confidence 99999999999999999999888664 47999999999999999999999999998765 211111
Q ss_pred CCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccc
Q 001224 677 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 756 (1120)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 756 (1120)
..+
T Consensus 267 -----------------------------------------------------------------------------~~~ 269 (814)
T 3mkq_A 267 -----------------------------------------------------------------------------NVG 269 (814)
T ss_dssp -----------------------------------------------------------------------------CCS
T ss_pred -----------------------------------------------------------------------------ecC
Confidence 114
Q ss_pred cccEEEEEEcCCCce-EEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 757 ATKISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 757 ~~~i~~l~~s~~g~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
...+.+++|+|++.. +++++.++.+.+|++. .....+.++|+
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~ 312 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGFDNGFTVLSLG-------------------------------------NDEPTLSLDPV 312 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEETTEEEEEECS-------------------------------------CCSCCEEECSS
T ss_pred CCcEEEEEEccCCCceEEEEEeCCCEEEEEcC-------------------------------------CCCceeEECCC
Confidence 567889999999875 3666667777887651 22345778899
Q ss_pred CCEEEEEe-CC---cEEE------EEcCCCcee----eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224 836 DSYVMSAS-GG---KISL------FNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 901 (1120)
Q Consensus 836 ~~~l~~~s-dg---~i~v------wd~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 901 (1120)
|+.+++++ +. .+.. |++..+... ..+..+...+.+++|+| ++++|++++ ||.+.+|++.....
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~- 389 (814)
T 3mkq_A 313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRN- 389 (814)
T ss_dssp SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEE-
T ss_pred CCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECccccc-
Confidence 99888876 32 1222 333333322 33455667899999999 999999988 89999999765432
Q ss_pred EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC---cEEEE-Ee
Q 001224 902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-VH 977 (1120)
Q Consensus 902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg---~~la~-~~ 977 (1120)
.+.+.|.+++|+||+++|++++.|+.|++|+.-. ++. ..+..++|+|+| .+|++ +.
T Consensus 390 ----~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~~ 449 (814)
T 3mkq_A 390 ----KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVKS 449 (814)
T ss_dssp ----EEEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEEE
T ss_pred ----cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEec
Confidence 2456788999999999999999999999996332 122 257888999998 35555 79
Q ss_pred CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEE------EcCCcEEEE
Q 001224 978 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVF 1028 (1120)
Q Consensus 978 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~------~~Dg~v~iw 1028 (1120)
|+.|++||+.+++.+..+. .|.. .++|+|||++|+++ +.++.+.+|
T Consensus 450 d~~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 450 DGFVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp TTEEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred CCEEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 9999999999999888775 3332 99999999999999 555554444
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9e-44 Score=450.86 Aligned_cols=467 Identities=16% Similarity=0.209 Sum_probs=373.7
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+. .+.+|.+.|.+++|+|+++ +|++++.||.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 477899999999999999999999999999999999988665 6779999999999999999 79999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC-CCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFR 579 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 579 (1120)
|+.+++.+..+.+|.+.|.+++|++ ++.+|++++.||.|++||+.+. .....+..|...+.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--------- 151 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--------- 151 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT---------
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC---------
Confidence 9999999999999999999999965 4579999999999999999876 344455566666666666651
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCcc
Q 001224 580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~ 657 (1120)
+++.+++++.||.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||+.++
T Consensus 152 -----------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~- 218 (814)
T 3mkq_A 152 -----------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK- 218 (814)
T ss_dssp -----------EEEEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-
T ss_pred -----------CCCEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence 33479999999999999999988888776543 24689999999 9999999999999999998765
Q ss_pred hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeec
Q 001224 658 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 737 (1120)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 737 (1120)
.....+
T Consensus 219 ~~~~~~-------------------------------------------------------------------------- 224 (814)
T 3mkq_A 219 SCVATL-------------------------------------------------------------------------- 224 (814)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred cEEEEE--------------------------------------------------------------------------
Confidence 211111
Q ss_pred ccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccccc
Q 001224 738 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 817 (1120)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 817 (1120)
.+|...|.+++|+|++..+++++.||.|++|++.. +.....
T Consensus 225 ----------------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------------------~~~~~~- 265 (814)
T 3mkq_A 225 ----------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----------------------YKVEKT- 265 (814)
T ss_dssp ----------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----------------------CSEEEE-
T ss_pred ----------------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------CcEEEE-
Confidence 12667899999999999999999999999998732 222111
Q ss_pred CCCCCCCCCccEEEEccCCC--EEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCc---EEE
Q 001224 818 VTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQI 892 (1120)
Q Consensus 818 ~~~~~~~~~v~~l~~s~d~~--~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~---v~v 892 (1120)
+. .+...+.+++|+|+++ +++++.++.+.+|++.... ..++++| +++++++++.+.. +..
T Consensus 266 ~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 266 LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEEE
T ss_pred ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeeee
Confidence 11 2678899999999997 5777779999999976532 3467788 8888888776652 111
Q ss_pred ------EEeeccee----eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCc
Q 001224 893 ------YNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 962 (1120)
Q Consensus 893 ------wd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~ 962 (1120)
|++..+.. ...+..|...+.+++|+|+|++|++++ |+.+.+|++...... . .+.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~-----~--------~~~i~ 396 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK-----A--------FGKCQ 396 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE-----E--------EEECS
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc-----C--------CCceE
Confidence 22222222 234566777899999999999999998 899999998653221 1 13678
Q ss_pred EEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCC---cEEEEEEcCCcEEEEEcCCcceeee
Q 001224 963 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCR 1038 (1120)
Q Consensus 963 ~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~~~Dg~v~iwd~~~~~~~~~ 1038 (1120)
+++|+|+|++++++ .++.|++|+.. .+|...+.+++|+||| ++|++++.|+.|++||+.+++.+..
T Consensus 397 ~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~ 466 (814)
T 3mkq_A 397 DFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRR 466 (814)
T ss_dssp EEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEE
T ss_pred EEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEE
Confidence 99999999999996 78999999632 2567889999999999 6889999999999999999999988
Q ss_pred eCCCcccCCCCCCCCccceEEEecCCCCCEEEEE------eCCCcEEEEe
Q 001224 1039 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1082 (1120)
Q Consensus 1039 ~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~------~~Dg~v~vW~ 1082 (1120)
+. +| .. .++|+| |+++|+++ +.++.+.+|.
T Consensus 467 ~~-------~~----~~--~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 467 ID-------VN----AK--DVIWSD-NGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp ES-------SC----EE--EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred Ee-------cC----CC--EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence 77 21 11 689999 68999999 5555555543
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-42 Score=400.26 Aligned_cols=306 Identities=16% Similarity=0.316 Sum_probs=261.1
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
+.+|.+.|++++|+|+++ ++++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|+
T Consensus 104 l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGK 163 (410)
T ss_dssp EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSS
T ss_pred ecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCC
Confidence 345889999999999999 59999999999999999988765 3788999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224 440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 519 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 519 (1120)
+|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||+.++.++.++.+|...|.
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence 99999999999999999987665 6889999999999999999 799999999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
+++++ +++.+|++|+.|++|++||+.+......+..|...|.+++|+|++......... ..........+.+|++|+
T Consensus 239 ~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 239 MVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp EEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEEE
T ss_pred EEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEEe
Confidence 99875 456899999999999999999988888899999999999999986521111100 111122334577999999
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCC
Q 001224 600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 679 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1120)
.|+.|++||+.++.++..+.+|.. .|.+++|+|+|++|++|+.||.|++||+.++ +....+
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~---------------- 376 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTL---------------- 376 (410)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEE----------------
T ss_pred CCCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEE----------------
Confidence 999999999999999999987644 7999999999999999999999999998665 222111
Q ss_pred CcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcccccc
Q 001224 680 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 759 (1120)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1120)
.+|...
T Consensus 377 --------------------------------------------------------------------------~~h~~~ 382 (410)
T 1vyh_C 377 --------------------------------------------------------------------------NAHEHF 382 (410)
T ss_dssp --------------------------------------------------------------------------ECCSSC
T ss_pred --------------------------------------------------------------------------cCCCCc
Confidence 126788
Q ss_pred EEEEEEcCCCceEEEeccCceEEEeee
Q 001224 760 ISRLIFTNSGNAILALASNAIHLLWKW 786 (1120)
Q Consensus 760 i~~l~~s~~g~~l~~~~~dg~i~vw~~ 786 (1120)
|.+++|+|++..+++++.||.|++|++
T Consensus 383 v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 383 VTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999975
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-39 Score=373.41 Aligned_cols=306 Identities=21% Similarity=0.346 Sum_probs=261.6
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 501 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd 501 (1120)
+.+|.++|++++|+|++++|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 67899999999999999999999999999999999988665 6889999999999999999 799999999999999
Q ss_pred CCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccc
Q 001224 502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 581 (1120)
Q Consensus 502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 581 (1120)
+.+++++.++.+|...|.+++|+++ +.+|++|+.|++|++||+.++.....+..|...+..+.++++|
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g---------- 246 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG---------- 246 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS----------
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC----------
Confidence 9999999999999999999999654 5799999999999999999988777777777766666666655
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhh
Q 001224 582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 661 (1120)
Q Consensus 582 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 661 (1120)
.++++++.|+.|++||+.+++....+..|.. .|.+++|+|++.+. ...
T Consensus 247 -----------~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~-------------------~~~ 294 (410)
T 1vyh_C 247 -----------TLIASCSNDQTVRVWVVATKECKAELREHRH--VVECISWAPESSYS-------------------SIS 294 (410)
T ss_dssp -----------SEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECCSCGGG-------------------GGG
T ss_pred -----------CEEEEEcCCCeEEEEECCCCceeeEecCCCc--eEEEEEEcCccccc-------------------chh
Confidence 4899999999999999999988888876544 68888888764210 000
Q ss_pred hcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCC
Q 001224 662 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 741 (1120)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 741 (1120)
..
T Consensus 295 ~~------------------------------------------------------------------------------ 296 (410)
T 1vyh_C 295 EA------------------------------------------------------------------------------ 296 (410)
T ss_dssp GC------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCC
Q 001224 742 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 821 (1120)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~ 821 (1120)
. +.
T Consensus 297 --------------~------------~~--------------------------------------------------- 299 (410)
T 1vyh_C 297 --------------T------------GS--------------------------------------------------- 299 (410)
T ss_dssp --------------C------------SC---------------------------------------------------
T ss_pred --------------c------------cc---------------------------------------------------
Confidence 0 00
Q ss_pred CCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001224 822 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 900 (1120)
Q Consensus 822 ~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 900 (1120)
.......++.++++|+ |++|++||+.++.++..+.+|...|++++|+| ++++|++|+.||.|++||+.++++
T Consensus 300 ------~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 300 ------ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp ------C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC
T ss_pred ------cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce
Confidence 0000112467888888 89999999999999999999999999999999 899999999999999999999999
Q ss_pred eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224 901 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 938 (1120)
Q Consensus 901 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~ 938 (1120)
+..+.+|...|++++|+|++.+|++|+.|++|++|+++
T Consensus 373 ~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999863
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.8e-39 Score=353.76 Aligned_cols=288 Identities=17% Similarity=0.306 Sum_probs=239.4
Q ss_pred ccCCCCceEEEEEcCC----CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 422 VKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 422 l~~h~~~V~~l~~spd----g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
+.+|.+.|++++|+|+ +++|++|+.|++|+||++.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 6789999999999984 67999999999999999988753 23446889999999999999999 79999999999
Q ss_pred EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224 498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 577 (1120)
Q Consensus 498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 577 (1120)
++||+.+++++..+..|...+.+++|++ ++.+
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~---------------------------------------------- 136 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQY---------------------------------------------- 136 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSE----------------------------------------------
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCE----------------------------------------------
Confidence 9999999998888777666665555532 2334
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224 578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 657 (1120)
|++++.||.|++||+.+++....+..+. ..+.+++|+|++++|++|+.||.|++||+.++.
T Consensus 137 -----------------l~~g~~dg~v~i~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 137 -----------------LATGTHVGKVNIFGVESGKKEYSLDTRG--KFILSIAYSPDGKYLASGAIDGIINIFDIATGK 197 (321)
T ss_dssp -----------------EEEECTTSEEEEEETTTCSEEEEEECSS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred -----------------EEEEcCCCcEEEEEcCCCceeEEecCCC--ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 4455555555555555555555555443 368899999999999999999999999986551
Q ss_pred hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeec
Q 001224 658 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 737 (1120)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 737 (1120)
.+..
T Consensus 198 -~~~~--------------------------------------------------------------------------- 201 (321)
T 3ow8_A 198 -LLHT--------------------------------------------------------------------------- 201 (321)
T ss_dssp -EEEE---------------------------------------------------------------------------
T ss_pred -EEEE---------------------------------------------------------------------------
Confidence 1000
Q ss_pred ccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccccc
Q 001224 738 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 817 (1120)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 817 (1120)
T Consensus 202 -------------------------------------------------------------------------------- 201 (321)
T 3ow8_A 202 -------------------------------------------------------------------------------- 201 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 818 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 818 ~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
+ .+|...|.+++|+|++++|++++ |++|++||+.+++....+.+|...|.+++|+| ++++|++|+.||.|++||+.
T Consensus 202 ~--~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 202 L--EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp E--CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred E--cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCC
Confidence 0 01677788999999999999998 89999999999999999999999999999999 89999999999999999999
Q ss_pred cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224 897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 938 (1120)
Q Consensus 897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~ 938 (1120)
+++++..+.+|.+.|++++|+|++++|++++.|++|++||..
T Consensus 279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999999963
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.7e-38 Score=353.07 Aligned_cols=291 Identities=20% Similarity=0.314 Sum_probs=251.3
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
..+.+|.+.|++++|+||++ +|++|+.||+|+|||+.+++.+.. +..|...|.+++|+|+
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~ 108 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYAPS 108 (340)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEECTT
T ss_pred eeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEECCC
Confidence 34456999999999999999 599999999999999999887763 5679999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCce-eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 516 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 516 (1120)
|++|++|+.|+.|++|++.++.. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.+|.+
T Consensus 109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~ 185 (340)
T 1got_B 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTG 185 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCC
Confidence 99999999999999999987642 233446789999999999999876 89999999999999999999999999999
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
.|.+++|++ ++.++++|+.|+.|++||+++......+..|...|.+++|+|++ ++|+
T Consensus 186 ~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---------------------~~l~ 242 (340)
T 1got_B 186 DVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG---------------------NAFA 242 (340)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS---------------------SEEE
T ss_pred ceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC---------------------CEEE
Confidence 999999865 55799999999999999999887777777777766666666655 4899
Q ss_pred EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCC
Q 001224 597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 676 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1120)
+++.||.|++||+++++.+..+..+.....|.+++|+|+|++|++|+.|+.|++||+.++ .....+
T Consensus 243 s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~------------- 308 (340)
T 1got_B 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL------------- 308 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE-------------
T ss_pred EEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe-------------
Confidence 999999999999999988888775555557899999999999999999999999998665 111111
Q ss_pred CCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccc
Q 001224 677 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 756 (1120)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 756 (1120)
.+|
T Consensus 309 -----------------------------------------------------------------------------~~h 311 (340)
T 1got_B 309 -----------------------------------------------------------------------------AGH 311 (340)
T ss_dssp -----------------------------------------------------------------------------ECC
T ss_pred -----------------------------------------------------------------------------ecC
Confidence 237
Q ss_pred cccEEEEEEcCCCceEEEeccCceEEEee
Q 001224 757 ATKISRLIFTNSGNAILALASNAIHLLWK 785 (1120)
Q Consensus 757 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 785 (1120)
...|.+++|+|+|..|++++.|+.|++|+
T Consensus 312 ~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 78899999999999999999999999996
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.6e-38 Score=353.90 Aligned_cols=294 Identities=17% Similarity=0.269 Sum_probs=253.5
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
..+.+|.+.|++++|+||++ +|++|+.||+|+|||..+++.... +..|...|.+++|+|+
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~sp~ 117 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYAPS 117 (354)
T ss_dssp EEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEECTT
T ss_pred EEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEECCC
Confidence 34556999999999999999 599999999999999998877653 5568889999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCce---eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 514 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~---~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h 514 (1120)
|++||+|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++||+.+++++..+.+|
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h 195 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGH 195 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCC
Confidence 99999999999999999875421 122335778999999999999999 6999999999999999999999999999
Q ss_pred ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224 515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 594 (1120)
Q Consensus 515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~ 594 (1120)
...|.++++++++++.+|++|+.||.|++||+++......+..|...|.+++|+|++ ++
T Consensus 196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---------------------~~ 254 (354)
T 2pbi_B 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG---------------------DA 254 (354)
T ss_dssp SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SE
T ss_pred CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC---------------------CE
Confidence 999999999888778899999999999999999888777777777766666666665 47
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccC
Q 001224 595 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 674 (1120)
Q Consensus 595 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 674 (1120)
|++++.|++|++||+++++.+..+..+.....+.+++|+|+|++|++|+.|+.|++||+.++. .+..+
T Consensus 255 l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l----------- 322 (354)
T 2pbi_B 255 FASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSIL----------- 322 (354)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEE-----------
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEE-----------
Confidence 999999999999999999888777655544568899999999999999999999999987661 11111
Q ss_pred CCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCc
Q 001224 675 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 754 (1120)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 754 (1120)
.
T Consensus 323 -------------------------------------------------------------------------------~ 323 (354)
T 2pbi_B 323 -------------------------------------------------------------------------------F 323 (354)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------E
Confidence 2
Q ss_pred cccccEEEEEEcCCCceEEEeccCceEEEee
Q 001224 755 LRATKISRLIFTNSGNAILALASNAIHLLWK 785 (1120)
Q Consensus 755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 785 (1120)
+|...|.+++|+|+|++|++++.|+.|++|+
T Consensus 324 ~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3778999999999999999999999999995
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-38 Score=365.43 Aligned_cols=339 Identities=15% Similarity=0.204 Sum_probs=273.4
Q ss_pred cCCCCceEEEEEcCCCC-eEEEEECCCeEEEEEc----cCCce------eeee-eeec------ccccCeEEEEEcCCCC
Q 001224 423 KDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDE------VRQH-LEID------AHVGGVNDIAFSHPNK 484 (1120)
Q Consensus 423 ~~h~~~V~~l~~spdg~-~las~~~dg~v~iwd~----~~~~~------~~~~-~~l~------~h~~~V~~v~~s~d~~ 484 (1120)
..|.+.|.+++|+|+|+ +||+|+.||.|++|++ .+++. .... ..+. +|.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 88772 2211 1112 2688999999999999
Q ss_pred ceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCc---
Q 001224 485 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW--- 561 (1120)
Q Consensus 485 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 561 (1120)
+|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 799999999999999 78889999999999999999865 5579999999999999999987776666655443
Q ss_pred eeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEE
Q 001224 562 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 641 (1120)
Q Consensus 562 v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 641 (1120)
+....+.+++. .+..+.++++ ..+++++.+|.|++||+.+++.+..+..+. ..|.+++|+|++++|++
T Consensus 197 ~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 197 INAENHSGDGS---------LGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHH--GPISVLEFNDTNKLLLS 264 (425)
T ss_dssp ---------CC---------CBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCS--SCEEEEEEETTTTEEEE
T ss_pred eeeccccCCcc---------eeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCC--CceEEEEECCCCCEEEE
Confidence 11111112211 2455556655 358999999999999999999988887554 47999999999999999
Q ss_pred EECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCc
Q 001224 642 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 721 (1120)
Q Consensus 642 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1120)
++.|+.|++||+.++. ....+
T Consensus 265 ~~~d~~i~i~d~~~~~-~~~~~---------------------------------------------------------- 285 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGN-SQNCF---------------------------------------------------------- 285 (425)
T ss_dssp EETTSCEEEECSSSBS-CSEEE----------------------------------------------------------
T ss_pred EcCCCEEEEEECCCCc-cceEe----------------------------------------------------------
Confidence 9999999999876541 00000
Q ss_pred ceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcccccc
Q 001224 722 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 801 (1120)
Q Consensus 722 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 801 (1120)
T Consensus 286 -------------------------------------------------------------------------------- 285 (425)
T 1r5m_A 286 -------------------------------------------------------------------------------- 285 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcE
Q 001224 802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 880 (1120)
Q Consensus 802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 880 (1120)
..|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| ++++
T Consensus 286 -------------------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 344 (425)
T 1r5m_A 286 -------------------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQK 344 (425)
T ss_dssp -------------------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSE
T ss_pred -------------------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCE
Confidence 0156678888899988 777777 89999999999999999999999999999999 8999
Q ss_pred EEEEeCCCcEEEEEeecce--------------------eeEeeccccc--ceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224 881 IAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSSD 938 (1120)
Q Consensus 881 lasg~~dg~v~vwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~ 938 (1120)
|++|+.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 345 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 345 YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999999999999988 8899999977 99999999999999999999999999986
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=344.96 Aligned_cols=288 Identities=15% Similarity=0.220 Sum_probs=247.5
Q ss_pred eccCCCCceEEEEecC----CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 360 TLNQGSSPMSMDFHPV----QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spd----g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
..+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++..... .+.+|...|.+++|+
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~~~~~ 89 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVSVDIS 89 (321)
T ss_dssp TTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEEEEC
T ss_pred cccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEEEEEC
Confidence 3469999999999986 44 6999999999999999876543211 377999999999999
Q ss_pred CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224 436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 515 (1120)
Q Consensus 436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 515 (1120)
+++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+.+++....+..|.
T Consensus 90 ~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~ 164 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRG 164 (321)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence 999999999999999999999998665 5778889999999999999 79999999999999999999999999999
Q ss_pred cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224 516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 595 (1120)
Q Consensus 516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l 595 (1120)
..|.+++|++ ++.+|++|+.||.|++||+.+.+....+..|...|.+++|+|++ ++|
T Consensus 165 ~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~---------------------~~l 221 (321)
T 3ow8_A 165 KFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS---------------------QLL 221 (321)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS---------------------CEE
T ss_pred ceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC---------------------CEE
Confidence 9999999864 56899999999999999999877777777776666666666555 589
Q ss_pred EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224 596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 675 (1120)
Q Consensus 596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 675 (1120)
++++.||.|++||+.+++....+..|. ..|.+++|+|++++|++++.|++|++||+.++ .++..+
T Consensus 222 ~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~------------ 286 (321)
T 3ow8_A 222 VTASDDGYIKIYDVQHANLAGTLSGHA--SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTF------------ 286 (321)
T ss_dssp EEECTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEE------------
T ss_pred EEEcCCCeEEEEECCCcceeEEEcCCC--CceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEE------------
Confidence 999999999999999999988887664 47999999999999999999999999998776 222221
Q ss_pred CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcc
Q 001224 676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 755 (1120)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 755 (1120)
.+
T Consensus 287 ------------------------------------------------------------------------------~~ 288 (321)
T 3ow8_A 287 ------------------------------------------------------------------------------FD 288 (321)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cC
Confidence 12
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeee
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKW 786 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 786 (1120)
|...|.+++|+|+++.|++++.||.|++||.
T Consensus 289 h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 289 HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 6678999999999999999999999999985
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-37 Score=345.19 Aligned_cols=286 Identities=15% Similarity=0.202 Sum_probs=247.0
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 488999999999999999999999999999999999987665 6778999999999999999 79999999999999
Q ss_pred ECCCC----ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224 501 DATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 501 d~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
|+.++ .....+.+|.+.|.++.|.++. .+++++.|++|++||+.+......+..|...|.+++|+|++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~----- 196 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT----- 196 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-----
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC---cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC-----
Confidence 99875 3566788999999999986542 58999999999999999887777777777767666666665
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+++++|+.||.|++||+.++..+..+..|.. .|.+++|+|++++|++|+.||+|++||+.++
T Consensus 197 ----------------~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 197 ----------------RLFVSGACDASAKLWDVREGMCRQTFTGHES--DINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp ----------------SEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ----------------CEEEEEeCCCcEEEEECCCCeeEEEEcCCcC--CEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 4799999999999999999999998876644 7999999999999999999999999998654
Q ss_pred chhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeee
Q 001224 657 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 736 (1120)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 736 (1120)
.. ...
T Consensus 259 ~~-~~~-------------------------------------------------------------------------- 263 (340)
T 1got_B 259 QE-LMT-------------------------------------------------------------------------- 263 (340)
T ss_dssp EE-EEE--------------------------------------------------------------------------
T ss_pred cE-EEE--------------------------------------------------------------------------
Confidence 10 000
Q ss_pred cccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccc
Q 001224 737 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 816 (1120)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 816 (1120)
+..
T Consensus 264 ----------------------------~~~------------------------------------------------- 266 (340)
T 1got_B 264 ----------------------------YSH------------------------------------------------- 266 (340)
T ss_dssp ----------------------------ECC-------------------------------------------------
T ss_pred ----------------------------Ecc-------------------------------------------------
Confidence 000
Q ss_pred cCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 817 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 817 ~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
..+...|.+++|+|+|+++++|+ |+.|++||+.+++.+..+.+|...|.+++|+| ++.+||+|+.||.|+|||
T Consensus 267 ----~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 267 ----DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ----TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred ----CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence 00334578899999999999998 89999999999999999999999999999999 999999999999999996
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3e-37 Score=342.08 Aligned_cols=301 Identities=19% Similarity=0.262 Sum_probs=245.2
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
+.+|.+.|++++|+|++..+|++|+.|++|++||+.+........+ ..+.+|...|.+++|+|+|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--------------~~~~~h~~~v~~~~~s~dg~ 78 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--------------EEEECCSSCEEEEEECTTSS
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--------------eEEeCCcccEEEEEECCCCC
Confidence 3459999999999998755799999999999999875432211111 14779999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224 440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 519 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 519 (1120)
+|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||++ +.++..+.+|...|.
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred EEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence 99999999999999999998665 6889999999999999999 79999999999999985 667888999999999
Q ss_pred EEeeccCC----CceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224 520 SVCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 595 (1120)
Q Consensus 520 ~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l 595 (1120)
++++.+.. ++..+++++.|+.|++||+........+..|...|.+++|+|+| ++|
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g---------------------~~l 211 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG---------------------TLI 211 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS---------------------SEE
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC---------------------CEE
Confidence 99987643 34589999999999999998877666666676666666666655 489
Q ss_pred EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224 596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 675 (1120)
Q Consensus 596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 675 (1120)
++++.||.|++||+.+++.+..+..+. .+.+++|+|++.++++++.+ .+++|++... .....+..+...
T Consensus 212 ~s~~~dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~------ 280 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG------ 280 (319)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEECCS---CEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT------
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCC---cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc------
Confidence 999999999999999999998887543 59999999999999988765 5999998765 222211110000
Q ss_pred CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcc
Q 001224 676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 755 (1120)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 755 (1120)
....
T Consensus 281 ----------------------------------------------------------------------------~~~~ 284 (319)
T 3frx_A 281 ----------------------------------------------------------------------------YSKA 284 (319)
T ss_dssp ----------------------------------------------------------------------------CCGG
T ss_pred ----------------------------------------------------------------------------cccC
Confidence 0012
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecc
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQR 788 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 788 (1120)
+...+.+++|+|+|++|++++.||.|++|++.+
T Consensus 285 ~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp GCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 556788999999999999999999999999843
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-38 Score=355.49 Aligned_cols=322 Identities=14% Similarity=0.176 Sum_probs=233.2
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC-
Q 001224 368 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS- 446 (1120)
Q Consensus 368 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~- 446 (1120)
..+.+.+++. ++.++.+.....|++.... ..+|...|++++|||||++||+|+.
T Consensus 9 sg~d~g~~~~--~~~~~g~~~~~~w~~p~~~-----------------------p~~H~~~V~~v~fSpDG~~las~s~d 63 (357)
T 4g56_B 9 SGVDLGTENL--YFQSNGSSKGSAWGRPVTA-----------------------PACMEVQIGAVRYRRDGALLLAASSL 63 (357)
T ss_dssp --------------------------------------------------------CCCSEEEEEEECSSSCEEEEEECS
T ss_pred cCCCCCccce--EEecCCCccccccCCCCCC-----------------------cccccCCEEEEEECCCCCEEEEEcCC
Confidence 3445555554 3444445677888875432 3469999999999999999999997
Q ss_pred -----CCeEEEEEccCCceeee-eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE----Eeecccc
Q 001224 447 -----RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEA 516 (1120)
Q Consensus 447 -----dg~v~iwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~----~~~~h~~ 516 (1120)
|+.|++|+..++..... .....+|...|.+++|+|++. +++++.||+|+|||+.+++... ...+|..
T Consensus 64 ~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 140 (357)
T 4g56_B 64 SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHDD 140 (357)
T ss_dssp SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence 78899999887654321 123457899999999999987 6678889999999999887543 4457999
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
.|.+++|++ ++.+|++|+.|+.|++||+.+......+..|...|.+++|++++. ..++
T Consensus 141 ~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~~~ 198 (357)
T 4g56_B 141 IVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TIFL 198 (357)
T ss_dssp CEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SCEE
T ss_pred CEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ceee
Confidence 999999865 568999999999999999999888888888888888888888765 4689
Q ss_pred EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224 597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 675 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 675 (1120)
+++.||.|++||+++++....+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +..+.+
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~------------ 265 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTS------------ 265 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEE------------
T ss_pred eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEE------------
Confidence 999999999999999988877766666667899999997 578999999999999998765 111100
Q ss_pred CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcc
Q 001224 676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 755 (1120)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 755 (1120)
T Consensus 266 -------------------------------------------------------------------------------- 265 (357)
T 4g56_B 266 -------------------------------------------------------------------------------- 265 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
.+|...|++++|+|+
T Consensus 266 -----------------------------------------------------------------~~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 266 -----------------------------------------------------------------AVHSQNITGLAYSYH 280 (357)
T ss_dssp -----------------------------------------------------------------CCCSSCEEEEEECSS
T ss_pred -----------------------------------------------------------------eccceeEEEEEEcCC
Confidence 015667788888887
Q ss_pred C-CEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224 836 D-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 898 (1120)
Q Consensus 836 ~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 898 (1120)
+ ++|++|+ |++|+|||+.+++.+..+ +|...|++++|+|.++++||+|+.||+|++|++.+.
T Consensus 281 ~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 281 SSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 6 5788888 899999999988877655 699999999999977899999999999999999764
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.3e-38 Score=355.38 Aligned_cols=319 Identities=15% Similarity=0.198 Sum_probs=231.9
Q ss_pred ceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcccccc
Q 001224 722 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 801 (1120)
Q Consensus 722 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 801 (1120)
.++.++.+.....|++..... ..|...|.+++|+|||++|++++.+. +++||-
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~--------------- 70 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG--------------- 70 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------
T ss_pred eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------
Confidence 344555567778888753111 24889999999999999999999853 355542
Q ss_pred CceeecCCCCCccccc-CCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceee----eecCCCCCeEEEEEecC
Q 001224 802 APQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA----TFMPPPPAATFLAFHPQ 876 (1120)
Q Consensus 802 ~~~~w~~~~g~~~~~~-~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~sp~ 876 (1120)
.+.+|+..++...... ....+|...|.+++|+|++++++++.||+|++||+.+++... ...+|...|++++|+|
T Consensus 71 ~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 149 (357)
T 4g56_B 71 SIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS- 149 (357)
T ss_dssp EEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-
T ss_pred eEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-
Confidence 2345555554422211 111237888999999999987776669999999998876543 3457899999999999
Q ss_pred CCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCC-EEEEEeCCCCEEEEECCCcccccceeeeccCCCC
Q 001224 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 955 (1120)
Q Consensus 877 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~ 955 (1120)
++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++. ++++++.|++|++||+.+++...... ...+
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~- 225 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCAS- 225 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTC-
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---eccc-
Confidence 899999999999999999999999999999999999999999875 78999999999999999865432211 1111
Q ss_pred CCCCCCcEEEEccCC-cEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCC-cEEEEEEcCCcEEEEEcCC
Q 001224 956 PTAQSDTRVQFHQDQ-IHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 956 ~~~~~i~~~~fspdg-~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
...+.+++|+|++ .+|+++ .|+.|++||+.+++++..+. +|...|++++|+|++ ++|++|+.||+|+|||+.+
T Consensus 226 --~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 226 --DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp --CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred --cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 1368999999984 677774 78999999999999887765 789999999999987 5799999999999999999
Q ss_pred cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1033 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1033 ~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
++++..+. |.+ .|. +++|+|.|+.+|++++.||+|++|++.+..
T Consensus 302 ~~~~~~~~--------H~~-~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 302 SEVFRDLS--------HRD-FVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CEEEEECC--------CSS-CEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CcEeEECC--------CCC-CEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 98876542 333 366 899999889999999999999999997654
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5e-37 Score=337.91 Aligned_cols=250 Identities=22% Similarity=0.352 Sum_probs=216.4
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
+.+|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+.. +.+|..+|.+++|+|+++
T Consensus 9 ~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFIARKN 68 (304)
T ss_dssp EEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGT
T ss_pred ecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEeCCCC
Confidence 335999999999999999 599999999999999999887653 677999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeeccccCe
Q 001224 440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 518 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v 518 (1120)
+|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++|+.|++|++||+.++ .....+.+|...|
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v 143 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred EEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcE
Confidence 99999999999999999998665 6889999999999999999 7999999999999999987 4567889999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC-CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 597 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~ 597 (1120)
.+++|++. ++.+|++|+.|++|++||+........+.. +...+..+.+.|. +++.+|++
T Consensus 144 ~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l~s 203 (304)
T 2ynn_A 144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYMIT 203 (304)
T ss_dssp EEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCEEEE
T ss_pred EEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCEEEE
Confidence 99999763 346999999999999999987665554432 2334444444332 24568999
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 598 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 598 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
++.|+.|++||+++++++..+.+|.. .|.+++|+|++.+|++|+.||+|++||..++
T Consensus 204 ~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EcCCCeEEEEeCCCCccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999987654 7999999999999999999999999998776
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=344.51 Aligned_cols=208 Identities=16% Similarity=0.231 Sum_probs=173.1
Q ss_pred cccCCCC-ceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224 421 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 499 (1120)
Q Consensus 421 ~l~~h~~-~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v 499 (1120)
.+.+|.. .|++++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 3678887 999999999999999999999999999998865443334578999999999999999 7999999999999
Q ss_pred EECCCC--ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCc---eeeeCCCCceeEEEEcCCCCeE
Q 001224 500 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT 574 (1120)
Q Consensus 500 wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~~ 574 (1120)
||+.++ +++..+.+|...|.+++|++ ++.+|++++.|++|++||+...... ..+..|...|
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v------------ 153 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV------------ 153 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE------------
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe------------
Confidence 999876 46788999999999999965 5579999999999999999865432 2333444444
Q ss_pred EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224 575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 652 (1120)
Q Consensus 575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 652 (1120)
..++|+|++++|++++.|+.|++||..++... ..+.+| ...|.+++|+|+|++|++++.|++|++|+
T Consensus 154 ---------~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 154 ---------KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp ---------EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ---------EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 44555555568999999999999999887644 455544 55899999999999999999999999999
Q ss_pred ccC
Q 001224 653 TSD 655 (1120)
Q Consensus 653 ~~~ 655 (1120)
...
T Consensus 223 ~~~ 225 (345)
T 3fm0_A 223 QYL 225 (345)
T ss_dssp EEC
T ss_pred ccc
Confidence 643
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-37 Score=355.91 Aligned_cols=359 Identities=11% Similarity=0.147 Sum_probs=269.2
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEec----CCCce------eEeeceeeeccCCCCcccccccccCCCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRER------LVLRNFKVWDLGACSMPLQAALVKDPGV 427 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 427 (1120)
.....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ....... ........+|.+
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 109 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP---------FALSASSGKTTN 109 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC---------CCCC------CB
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc---------ccccccccCCCC
Confidence 3344577999999999999944999999999999999 88773 2210000 000011234788
Q ss_pred ceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce
Q 001224 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 507 (1120)
Q Consensus 428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~ 507 (1120)
.|.+++|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcE
Confidence 999999999999999999999999999 4454444 6788999999999999999 799999999999999999999
Q ss_pred eEEeeccccC---------------eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCC
Q 001224 508 QYIFEGHEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 572 (1120)
Q Consensus 508 ~~~~~~h~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 572 (1120)
+..+..+... +.+++|++. ..+++++.||.|++||+........+..+...+.+++|+|++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 259 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN- 259 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-
Confidence 9999888777 888888654 368999999999999999887777777776666666666655
Q ss_pred eEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224 573 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 652 (1120)
Q Consensus 573 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 652 (1120)
++|++++.||.|++||+.+++.+..+..+. ..+.+++|+|++ ++++++.|+.|++||
T Consensus 260 --------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~d~~i~i~d 316 (425)
T 1r5m_A 260 --------------------KLLLSASDDGTLRIWHGGNGNSQNCFYGHS--QSIVSASWVGDD-KVISCSMDGSVRLWS 316 (425)
T ss_dssp --------------------TEEEEEETTSCEEEECSSSBSCSEEECCCS--SCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred --------------------CEEEEEcCCCEEEEEECCCCccceEecCCC--ccEEEEEECCCC-EEEEEeCCCcEEEEE
Confidence 479999999999999999999998887554 479999999999 999999999999999
Q ss_pred ccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcc
Q 001224 653 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 732 (1120)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 732 (1120)
+.++ .....+
T Consensus 317 ~~~~-~~~~~~--------------------------------------------------------------------- 326 (425)
T 1r5m_A 317 LKQN-TLLALS--------------------------------------------------------------------- 326 (425)
T ss_dssp TTTT-EEEEEE---------------------------------------------------------------------
T ss_pred CCCC-cEeEec---------------------------------------------------------------------
Confidence 8765 111111
Q ss_pred eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224 733 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 812 (1120)
Q Consensus 733 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 812 (1120)
..|...|.+++|+|+++.+++++.||.|++|++.....
T Consensus 327 ---------------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~--------------------- 364 (425)
T 1r5m_A 327 ---------------------IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS--------------------- 364 (425)
T ss_dssp ---------------------ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------------------
T ss_pred ---------------------ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc---------------------
Confidence 11456778888888888888888888888888642110
Q ss_pred cccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCC--CeEEEEEecCCCcEEEEEeCCCcE
Q 001224 813 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSI 890 (1120)
Q Consensus 813 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v 890 (1120)
.. .. +....++. +.......+..+..|.. .|++++|+| ++++|++|+.||.|
T Consensus 365 -~~------------~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 365 -KS------------RS---------LYGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEG 418 (425)
T ss_dssp ---------------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCC
T ss_pred -ce------------ee---------eecccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceE
Confidence 00 00 00001222 22223346778888866 999999999 89999999999999
Q ss_pred EEEEee
Q 001224 891 QIYNVR 896 (1120)
Q Consensus 891 ~vwd~~ 896 (1120)
++|++.
T Consensus 419 ~iw~~~ 424 (425)
T 1r5m_A 419 SVVAIP 424 (425)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999975
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.2e-37 Score=354.73 Aligned_cols=306 Identities=17% Similarity=0.271 Sum_probs=249.9
Q ss_pred EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCc
Q 001224 450 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 529 (1120)
Q Consensus 450 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 529 (1120)
+..|+.....+. .++.+|.+.|++++|+|+++ +|++|+.|++|+|||+.+++.+..+.+|...|.+++|++ ++
T Consensus 48 ~~~~~~~~~~~~---~~l~gH~~~V~~~~~sp~~~--~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~--~g 120 (380)
T 3iz6_a 48 AVSFNPTDLVCC---RTLQGHSGKVYSLDWTPEKN--WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP--NG 120 (380)
T ss_dssp CCCCCCCCCEEE---EEECCCSSCEEEEEECTTSS--CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT--TS
T ss_pred ccccccceeEEe---ecccccccEEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC--CC
Confidence 334555554433 37899999999999999999 699999999999999999999999999999999999864 56
Q ss_pred eEEEEEecCCeEEEEecCCCC-------CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224 530 QFIFSTALDGKIKAWLYDNLG-------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 602 (1120)
Q Consensus 530 ~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 602 (1120)
.+|++|+.|+.+++||+.... ....+.+|...+.++.|.|++. ..|++|+.|+
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~--------------------~~l~s~s~D~ 180 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE--------------------TRLITGSGDQ 180 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS--------------------SCEEEECTTS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCC--------------------CEEEEECCCC
Confidence 899999999999999987532 2234455666666666666543 4699999999
Q ss_pred eEEEEECCCCceeEEEec---CCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224 603 SIKFWDMDSVQLLTSIDA---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 678 (1120)
Q Consensus 603 ~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1120)
+|++||+.+++.+..+.. .++...|.+++|++ ++.++++|+.|++|++||++........
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~---------------- 244 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT---------------- 244 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE----------------
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE----------------
Confidence 999999999998887732 23455789999987 8899999999999999997532100000
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224 679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 758 (1120)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 758 (1120)
T Consensus 245 -------------------------------------------------------------------------------- 244 (380)
T 3iz6_a 245 -------------------------------------------------------------------------------- 244 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224 759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 838 (1120)
Q Consensus 759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~ 838 (1120)
+ .+|...|.+++|+|++++
T Consensus 245 -----------------------------------------------------------~--~~h~~~v~~v~~~p~~~~ 263 (380)
T 3iz6_a 245 -----------------------------------------------------------Y--HGHEGDINSVKFFPDGQR 263 (380)
T ss_dssp -----------------------------------------------------------E--CCCSSCCCEEEECTTSSE
T ss_pred -----------------------------------------------------------E--CCcCCCeEEEEEecCCCe
Confidence 0 016777888888888888
Q ss_pred EEEEe-CCcEEEEEcCCCceeeeecCCC-------CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee----cc
Q 001224 839 VMSAS-GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL----KG 906 (1120)
Q Consensus 839 l~~~s-dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l----~~ 906 (1120)
|++|+ |++|++||+.+++.+..+..+. ..|++++|+| ++++|++|+.||.|++||+.+++.+..+ .+
T Consensus 264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 342 (380)
T 3iz6_a 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS 342 (380)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSS
T ss_pred EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCC
Confidence 88888 8888899888888777765432 3489999999 9999999999999999999988877776 68
Q ss_pred cccceEEEEEccCCCEEEEEeCCCCEEEEECCCc
Q 001224 907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 940 (1120)
Q Consensus 907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~ 940 (1120)
|.+.|++++|+|||++|++|+.|++|+||++...
T Consensus 343 h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 343 HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999999999999999999999999874
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-37 Score=353.75 Aligned_cols=300 Identities=18% Similarity=0.291 Sum_probs=248.6
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
..+.+|.+.|++++|+|+|++ |++|+.||+|+|||+.+++.... +.+|...|.+++|+|+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 119 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECAFAPN 119 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCEECTT
T ss_pred ecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEEECCC
Confidence 345569999999999999995 99999999999999999887763 6789999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCce----eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe--
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 511 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-- 511 (1120)
|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++++..+
T Consensus 120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~ 198 (380)
T 3iz6_a 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFGS 198 (380)
T ss_dssp SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEeec
Confidence 99999999999999999975421 1122357899999999999998654 6999999999999999999999887
Q ss_pred ---eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224 512 ---EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 512 ---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
.+|...|.+++|++ .++.+|++|+.|++|++||++. ......+..|...|.+++|+|+|
T Consensus 199 ~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~---------------- 261 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG---------------- 261 (380)
T ss_dssp CSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS----------------
T ss_pred ccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC----------------
Confidence 67999999999865 3557999999999999999984 35555666676666666666655
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC-----CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhh
Q 001224 588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 662 (1120)
Q Consensus 588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 662 (1120)
++|++++.||+|++||+.+++.+..+..+.. ...+.+++|+|+|++|++|+.||.|++||..++. ....
T Consensus 262 -----~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~ 335 (380)
T 3iz6_a 262 -----QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE-MVLN 335 (380)
T ss_dssp -----SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC-EEEE
T ss_pred -----CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc-eEEE
Confidence 5899999999999999999999888765432 2348899999999999999999999999986651 1111
Q ss_pred cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCC
Q 001224 663 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 742 (1120)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 742 (1120)
+.
T Consensus 336 ~~------------------------------------------------------------------------------ 337 (380)
T 3iz6_a 336 LG------------------------------------------------------------------------------ 337 (380)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred Ee------------------------------------------------------------------------------
Confidence 10
Q ss_pred CccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeec
Q 001224 743 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 787 (1120)
Q Consensus 743 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 787 (1120)
....+|...|.+++|+|+|..|++++.|+.|++|++.
T Consensus 338 --------~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 338 --------TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp --------CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred --------cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 0002378889999999999999999999999999974
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=346.28 Aligned_cols=295 Identities=15% Similarity=0.157 Sum_probs=229.8
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC-cccccCCCCCCCCCccEEEEcc
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK 834 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~-~~~~~~~~~~~~~~v~~l~~s~ 834 (1120)
+...|.+++|+|||+.|++++ |+.+++|+... .+|+..... ..........+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567799999999999777665 77889997522 122211100 0000000112567899999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCceeee----ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc
Q 001224 835 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 909 (1120)
Q Consensus 835 d~~~l~~~s-dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 909 (1120)
++ .+++|+ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||.|++||+.+++++..+.+|.+
T Consensus 93 d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 96 566666 99999999998876544 448999999999999 999999999999999999999999999999999
Q ss_pred ceEEEEEccCCC-EEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-CcEEEEE-eCCeEEEEEc
Q 001224 910 RITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFET 986 (1120)
Q Consensus 910 ~V~~l~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-g~~la~~-~d~~v~i~d~ 986 (1120)
.|++++|++++. +|++++.|++|++||+.+++..... .. ..+. ..+.+++|+|+ +++|+++ .|+.|++||+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--GC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC--C-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeee--ec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 999999999984 7899999999999999986542211 11 1111 35789999995 5677775 7899999999
Q ss_pred CCceeeeccccCCCCCCeeEEEECCCC-cEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224 987 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus 987 ~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
.+++++..+. +|...|++++|+||+ ++|++|+.|++|+|||+.+++++. +. +|.+. |. +++|+|++
T Consensus 245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H~~~-V~--~v~~sp~~ 311 (344)
T 4gqb_B 245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AHRDF-VR--DATWSPLN 311 (344)
T ss_dssp CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CCSSC-EE--EEEECSSS
T ss_pred CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CCCCC-EE--EEEEeCCC
Confidence 9999988876 899999999999998 579999999999999999998763 33 44333 66 89999965
Q ss_pred CCEEEEEeCCCcEEEEecCCCC
Q 001224 1066 PNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1066 ~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
..+|++++.||+|++|++.+..
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEEcCCCeEEEEECCCCC
Confidence 5678899999999999998754
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-36 Score=335.01 Aligned_cols=289 Identities=20% Similarity=0.271 Sum_probs=245.6
Q ss_pred eeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEE
Q 001224 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 544 (1120)
Q Consensus 465 ~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 544 (1120)
.++.+|.+.|.+++|+|+++ +|++++.||+|++||+.++..+..+.+|..+|.+++|+++ +++|++|+.|++|++|
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSEEEEE
T ss_pred EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC--CCEEEEECCCCEEEEE
Confidence 46889999999999999999 7999999999999999999999999999999999998654 5799999999999999
Q ss_pred ecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEEecCCC
Q 001224 545 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGG 623 (1120)
Q Consensus 545 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~ 623 (1120)
|+.+++....+..|...|.+++|+|++. +|++|+.||+|++||+.++. ....+..|.
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~---------------------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~- 140 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---------------------YVLSGSDDLTVKLWNWENNWALEQTFEGHE- 140 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---------------------EEEEEETTSCEEEEEGGGTTEEEEEECCCC-
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCC---------------------EEEEECCCCeEEEEECCCCcchhhhhcccC-
Confidence 9999888888888877777777776664 79999999999999998874 445666554
Q ss_pred CCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccc
Q 001224 624 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 702 (1120)
Q Consensus 624 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1120)
..|.+++|+| ++.+|++|+.|++|++||+.++.... .+
T Consensus 141 -~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~-~~--------------------------------------- 179 (304)
T 2ynn_A 141 -HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF-TL--------------------------------------- 179 (304)
T ss_dssp -SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE-EE---------------------------------------
T ss_pred -CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc-ee---------------------------------------
Confidence 4799999999 68999999999999999985441000 00
Q ss_pred cccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEE
Q 001224 703 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 782 (1120)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 782 (1120)
.
T Consensus 180 ----------------------------------------------------------------------~--------- 180 (304)
T 2ynn_A 180 ----------------------------------------------------------------------T--------- 180 (304)
T ss_dssp ----------------------------------------------------------------------E---------
T ss_pred ----------------------------------------------------------------------c---------
Confidence 0
Q ss_pred EeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc--CCCEEEEEe-CCcEEEEEcCCCceee
Q 001224 783 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA 859 (1120)
Q Consensus 783 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~--d~~~l~~~s-dg~i~vwd~~~~~~~~ 859 (1120)
..+...+..++++| ++.+|++++ |++|++||+.+++++.
T Consensus 181 --------------------------------------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~ 222 (304)
T 2ynn_A 181 --------------------------------------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (304)
T ss_dssp --------------------------------------CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred --------------------------------------cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence 00334455566654 677899998 8999999999999999
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCC--EEEEEeCCCCEEEEEC
Q 001224 860 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS 937 (1120)
Q Consensus 860 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~l~s~s~Dg~v~iWd~ 937 (1120)
++.+|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+..|...+++++|+|++. ++++|+.|| +.+|++
T Consensus 223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 9999999999999999 899999999999999999999999999999999999999999875 578877666 788887
Q ss_pred CC
Q 001224 938 DG 939 (1120)
Q Consensus 938 ~~ 939 (1120)
..
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 65
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.1e-36 Score=333.96 Aligned_cols=214 Identities=19% Similarity=0.293 Sum_probs=183.2
Q ss_pred cccCCCCceEEEEEcCCC-CeEEEEECCCeEEEEEccCCce--eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 421 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg-~~las~~~dg~v~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... -.....+.+|...|.+++|+|+++ ++++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 478999999999999965 8999999999999999975322 123457889999999999999999 79999999999
Q ss_pred EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224 498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 577 (1120)
Q Consensus 498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 577 (1120)
++||+.+++++..+.+|...|.+++|++ ++.+|++|+.|++|++||++. .....+..|...+..+.+.|.+.
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~----- 161 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK----- 161 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence 9999999999999999999999999865 457999999999999999964 55666777888888888877653
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
..+++..+++++.|+.|++||+.+++....+.+|. ..|.+++|+|+|++|++++.||.|++||+.++
T Consensus 162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN--SNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp --------------CCEEEEEETTSCEEEEETTTTEEEEEECCCC--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 12345579999999999999999999888887664 47999999999999999999999999998655
No 32
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=367.79 Aligned_cols=332 Identities=13% Similarity=0.179 Sum_probs=269.5
Q ss_pred CceEEEEEcCCCC-eEEEE----------ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC
Q 001224 427 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 495 (1120)
Q Consensus 427 ~~V~~l~~spdg~-~las~----------~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~ 495 (1120)
..|.+++|+|+|+ +||+| +.|+.|+|||+.++........ ..|...|.+++|+|+++ +|++++.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~--~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNK--IIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCC--eEEEEccCC
Confidence 4789999999997 99999 8899999999998763322222 35889999999999999 699999999
Q ss_pred cEEEEECCC----CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC------Cceee---eCCCCce
Q 001224 496 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVDY---EAPGRWC 562 (1120)
Q Consensus 496 ~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~---~~~~~~v 562 (1120)
.|++||+.+ .+.+..+.+|...|.+++|+++ ++.+|++++.||.|++||+.+.. ....+ ..|...+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 999999987 4588899999999999999765 24699999999999999998865 22222 3344455
Q ss_pred eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC----CCCcCeEEEcCCC-C
Q 001224 563 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG-C 637 (1120)
Q Consensus 563 ~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~-~ 637 (1120)
.+++|+|++ +..+++++.||.|++||+.+++.+..+..+.. ...+.+++|+|++ .
T Consensus 169 ~~~~~~~~~--------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 169 ISLAWNQSL--------------------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CEEEECSSC--------------------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred eEEEeCCCC--------------------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 555555542 36899999999999999999999888876531 3579999999997 6
Q ss_pred EEEEEECCC---cEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcc
Q 001224 638 LLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 714 (1120)
Q Consensus 638 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1120)
++++++.|+ .|++||+.++......
T Consensus 229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~---------------------------------------------------- 256 (416)
T 2pm9_A 229 RVATATGSDNDPSILIWDLRNANTPLQT---------------------------------------------------- 256 (416)
T ss_dssp EEEEEECCSSSCCCCEEETTSTTSCSBC----------------------------------------------------
T ss_pred EEEEEECCCCCceEEEEeCCCCCCCcEE----------------------------------------------------
Confidence 899999998 9999998654110000
Q ss_pred cccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCC
Q 001224 715 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 794 (1120)
Q Consensus 715 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 794 (1120)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEE
Q 001224 795 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA 872 (1120)
Q Consensus 795 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 872 (1120)
+. .+|...|.+++|+| ++++|++++ |+.|++||+.+++.+..+..|...|.+++
T Consensus 257 -----------------------~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~ 312 (416)
T 2pm9_A 257 -----------------------LN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK 312 (416)
T ss_dssp -----------------------CC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred -----------------------ee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence 00 01667788888888 888888888 89999999999999999999999999999
Q ss_pred EecCCC-cEEEEEeCCCcEEEEEeecceeeEeec-----------------------------------ccccceEEEEE
Q 001224 873 FHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLAF 916 (1120)
Q Consensus 873 ~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~~ 916 (1120)
|+| ++ .+|++++.||.|++||+.+++...... .|...+++++|
T Consensus 313 ~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 313 FAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW 391 (416)
T ss_dssp ECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred ECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence 999 66 899999999999999998765332221 16778889999
Q ss_pred ccCCCEEEEEeCCCCEEEEECCC
Q 001224 917 SHALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 917 s~d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
+|||++|++++.|++|+||++.+
T Consensus 392 s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ETTTEEECBCTTSSCBCCBCCCC
T ss_pred eeCCeEEEEeCCCCeEEEEEecc
Confidence 99999999999999999999987
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=344.08 Aligned_cols=292 Identities=13% Similarity=0.127 Sum_probs=231.8
Q ss_pred cCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCC--------ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC
Q 001224 423 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 494 (1120)
Q Consensus 423 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d 494 (1120)
..|...|.+++|||||++|++++ |+++++||.... ...........|...|.+++|+|++. +++|+.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---l~~~s~d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG---ILVASDS 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE---EEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe---EEEEECC
Confidence 35777899999999999999888 777888864211 00001111234667899999999865 8899999
Q ss_pred CcEEEEECCCCceeEE----eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCC
Q 001224 495 KTIKVWDATNGAKQYI----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 570 (1120)
Q Consensus 495 ~~i~vwd~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 570 (1120)
|+|+|||+.+++.+.. +.+|.+.|.+++|++ ++.+|++|+.|++|++||+.+++....+..|...|.+++|+++
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp--dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~ 180 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS--SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPH 180 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSS
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCC
Confidence 9999999999887654 358999999999865 5689999999999999999998888888888888888888887
Q ss_pred CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEE
Q 001224 571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIK 649 (1120)
Q Consensus 571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 649 (1120)
+. ..|++++.|+.|++||+++++....+....+...+.+++|+| ++++|++|+.||.|+
T Consensus 181 ~~--------------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 181 KD--------------------SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp CT--------------------TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred CC--------------------CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 75 468999999999999999999988886555555788999999 567899999999999
Q ss_pred EEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCC
Q 001224 650 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 729 (1120)
Q Consensus 650 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 729 (1120)
+||+.++ +.+..+
T Consensus 241 ~wd~~~~-~~~~~~------------------------------------------------------------------ 253 (344)
T 4gqb_B 241 LVDTKST-SCVLSS------------------------------------------------------------------ 253 (344)
T ss_dssp EEESCC---CCEEE------------------------------------------------------------------
T ss_pred EEECCCC-cEEEEE------------------------------------------------------------------
Confidence 9998765 111100
Q ss_pred CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCC
Q 001224 730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 809 (1120)
Q Consensus 730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 809 (1120)
T Consensus 254 -------------------------------------------------------------------------------- 253 (344)
T 4gqb_B 254 -------------------------------------------------------------------------------- 253 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCCCCCCCCCccEEEEccCC-CEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC
Q 001224 810 SGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD 887 (1120)
Q Consensus 810 ~g~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 887 (1120)
. +|...|++++|+|++ ++|++|+ |++|+|||+.++++. .+.+|...|++++|+|++..+|++|+.|
T Consensus 254 ---------~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 254 ---------A--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp ---------E--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred ---------c--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence 0 166778888888887 5788888 899999999887754 5678999999999999555678899999
Q ss_pred CcEEEEEeecce
Q 001224 888 SSIQIYNVRVDE 899 (1120)
Q Consensus 888 g~v~vwd~~~~~ 899 (1120)
|+|++|++.+..
T Consensus 322 ~~v~~w~v~~~~ 333 (344)
T 4gqb_B 322 HQVVHHVVPTEP 333 (344)
T ss_dssp SCEEEEECCC--
T ss_pred CeEEEEECCCCC
Confidence 999999998654
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.8e-36 Score=338.24 Aligned_cols=289 Identities=14% Similarity=0.195 Sum_probs=247.6
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+.+|.+.|++++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 378999999999999999999999999999999999887554 5678899999999999999 79999999999999
Q ss_pred ECCCC------ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeE
Q 001224 501 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 574 (1120)
Q Consensus 501 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 574 (1120)
++... .....+.+|...|.+++|+++ +..|++++.|++|++||+.+.+....+..|...+.++.++|+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~--- 208 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE--- 208 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence 98653 345678889999999998654 4689999999999999999988888888887777777766532
Q ss_pred EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224 575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 654 (1120)
++++|++|+.||.|++||+++++++..+..|. ..|.+++|+|++.+|++++.|++|++||+.
T Consensus 209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 23589999999999999999999999887664 479999999999999999999999999986
Q ss_pred CcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCccee
Q 001224 655 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 734 (1120)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 734 (1120)
.+.. ..
T Consensus 271 ~~~~-~~------------------------------------------------------------------------- 276 (354)
T 2pbi_B 271 ADRE-VA------------------------------------------------------------------------- 276 (354)
T ss_dssp TTEE-EE-------------------------------------------------------------------------
T ss_pred CCcE-EE-------------------------------------------------------------------------
Confidence 5410 00
Q ss_pred eecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcc
Q 001224 735 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 814 (1120)
Q Consensus 735 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~ 814 (1120)
++.
T Consensus 277 ------------------------------------------------~~~----------------------------- 279 (354)
T 2pbi_B 277 ------------------------------------------------IYS----------------------------- 279 (354)
T ss_dssp ------------------------------------------------EEC-----------------------------
T ss_pred ------------------------------------------------EEc-----------------------------
Confidence 000
Q ss_pred cccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224 815 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 893 (1120)
Q Consensus 815 ~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 893 (1120)
...+...+.+++|+|+++++++|+ |++|++||+.+++.+..+.+|...|++++|+| ++++||+|+.||.|+||
T Consensus 280 -----~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 280 -----KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp -----CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred -----CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence 000234567889999999999998 89999999999999999999999999999999 99999999999999999
Q ss_pred E
Q 001224 894 N 894 (1120)
Q Consensus 894 d 894 (1120)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.6e-36 Score=336.03 Aligned_cols=216 Identities=20% Similarity=0.311 Sum_probs=180.5
Q ss_pred cccCCCCceEEEEE-----cC-CCCeEEEEECCCeEEEEEccCCce----eeeeeeecccccCeEEEEEcCCCCceEEEE
Q 001224 421 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 490 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~-----sp-dg~~las~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s 490 (1120)
.+.+|.+.|++++| ++ |+++||+|+.|++|++||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 58899999999999 77 999999999999999999976532 123446889999999999999999 7999
Q ss_pred ecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee---CCCCceeEEEE
Q 001224 491 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAY 567 (1120)
Q Consensus 491 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~ 567 (1120)
|+.|++|++||+.+++++..+.+|...|.+++|++ ++.+|++++.|++|++||+.. ....... .|...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999999999999999999999999965 457999999999999999973 2222222 56677888888
Q ss_pred cCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001224 568 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 647 (1120)
Q Consensus 568 s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 647 (1120)
+|++... ..+.|.+.++++++.||.|++||. +.+....+..|. ..|.+++|+|+|++|++|+.||.
T Consensus 171 ~~~~~~~-----------~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~--~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 171 SPIMKSA-----------NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE--SNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp CCCCCSC-----------SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTCE
T ss_pred ccccccc-----------cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc--ccceEEEECCCCCEEEEEcCCCe
Confidence 8876411 123455678999999999999994 566666776554 47999999999999999999999
Q ss_pred EEEEEccC
Q 001224 648 IKILATSD 655 (1120)
Q Consensus 648 i~iwd~~~ 655 (1120)
|++||+.+
T Consensus 237 v~iwd~~~ 244 (343)
T 2xzm_R 237 LLIWDILN 244 (343)
T ss_dssp EEEEESSC
T ss_pred EEEEECCC
Confidence 99999743
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.5e-36 Score=334.82 Aligned_cols=324 Identities=14% Similarity=0.170 Sum_probs=264.3
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
+.+.|.+++|+|||+. ++++..++.+.+|+........ ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 5678999999999995 7777777777776655433322 1347999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeeec--ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc--eeEEeeccccCe
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV 518 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v 518 (1120)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999876554443444 7999999999999999 79999999999999999887 667788899999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
.+++|++ ++.++++++.||.|++||+.+.+....+..|...+.+++|+|++ ++++++
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~ 201 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG---------------------TKLWTG 201 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SEEEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC---------------------CEEEEE
Confidence 9999865 55799999999999999999877666666666666666655555 589999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224 599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 678 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1120)
+.||.|++||+.+++.+..+... ..+.+++|+|+++++++++.++.|++||+.++. ..
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~------------------ 259 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KY------------------ 259 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EE------------------
T ss_pred ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eE------------------
Confidence 99999999999999988887643 358999999999999999999999999976541 00
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224 679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 758 (1120)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 758 (1120)
T Consensus 260 -------------------------------------------------------------------------------- 259 (337)
T 1gxr_A 260 -------------------------------------------------------------------------------- 259 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224 759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 838 (1120)
Q Consensus 759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~ 838 (1120)
. + ..|...+.+++|+|++++
T Consensus 260 -----------------------~-----------------------------------~--~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 260 -----------------------Q-----------------------------------L--HLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp -----------------------E-----------------------------------E--CCCSSCEEEEEECTTSSE
T ss_pred -----------------------E-----------------------------------E--cCCccceeEEEECCCCCE
Confidence 0 0 015666778888888888
Q ss_pred EEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 839 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 839 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
+++++ ||.|++||+.+++.+.... |...|.+++|+| ++++|++++.||.|++|++.
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 88887 7888899888877765543 778899999999 89999999999999999974
No 37
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-36 Score=337.37 Aligned_cols=301 Identities=16% Similarity=0.213 Sum_probs=238.8
Q ss_pred cccc-cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224 755 LRAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 833 (1120)
Q Consensus 755 ~~~~-~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s 833 (1120)
+|.. .|..++|+|+|++|++++.|+.|++|++..... ........+|...|.+++|+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~~~~h~~~v~~~~~s 70 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVLSEGHQRTVRKVAWS 70 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEECSSCSSCEEEEEEC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeeeccccCCcEEEEEEC
Confidence 3666 899999999999999999999999999743211 00000012389999999999
Q ss_pred cCCCEEEEEe-CCcEEEEEcCCC--ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc---eeeEeeccc
Q 001224 834 KNDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGH 907 (1120)
Q Consensus 834 ~d~~~l~~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h 907 (1120)
|++++|++++ |++|++|++..+ +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++ +++..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999999 999999998865 45778999999999999999 8999999999999999999875 456778899
Q ss_pred ccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEc
Q 001224 908 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 986 (1120)
Q Consensus 908 ~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~ 986 (1120)
...|.+++|+|++++|++++.|++|++||+.+++. .+.....+|.. .|.+++|+|+|++|++ +.|+.|++||.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 99999999999999999999999999999887532 23445566654 8999999999999999 58999999996
Q ss_pred CCc---------------eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeee--eCCCcccCCCC
Q 001224 987 TKL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR--INPSAYLPAGV 1049 (1120)
Q Consensus 987 ~~~---------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~--~~~~~~~~~g~ 1049 (1120)
... .++..+. ..|...|.+++|+|++.+|++++.|+.|++|+...+..... +........+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 302 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred ccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence 332 2222222 24789999999999999999999999999999876532110 00001112244
Q ss_pred CCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001224 1050 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1088 (1120)
Q Consensus 1050 ~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1088 (1120)
.. .|. +++|+|+++.+|++|+.||+|++|++.+.+.
T Consensus 303 ~~-~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 303 SQ-DVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SS-CEE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cC-cEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 33 366 8999996557999999999999999998773
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-38 Score=361.95 Aligned_cols=366 Identities=14% Similarity=0.183 Sum_probs=268.1
Q ss_pred CCCCceEEEEecCCCeEEEEE----------eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 432 (1120)
+...|++++|+|+|+.++++| +.||.|+|||+.+++.... + ....|...|.++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~ 73 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDL 73 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEE
Confidence 446789999999998779999 8899999999998763210 0 123588999999
Q ss_pred EEcCCCCeEEEEECCCeEEEEEccCCce-eeeeeeecccccCeEEEEEcCC-CCceEEEEecCCCcEEEEECCCCc----
Q 001224 433 IWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA---- 506 (1120)
Q Consensus 433 ~~spdg~~las~~~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~s~d~~i~vwd~~~~~---- 506 (1120)
+|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTT
T ss_pred EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccc
Confidence 9999999999999999999999987211 1133368899999999999999 66 79999999999999999887
Q ss_pred --eeE---EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC------CCceeEEEEcCCCCeEE
Q 001224 507 --KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTRTY 575 (1120)
Q Consensus 507 --~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~~~ 575 (1120)
... .+.+|...|.+++|+++. +.+|++++.||.|++||+++.+....+..+ ...+.+++|+|++.
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 227 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS--- 227 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT---
T ss_pred cccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC---
Confidence 333 346799999999997652 469999999999999999987766666554 44455555555543
Q ss_pred ecccccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCC-ceeEEEe-cCCCCCCcCeEEEcC-CCCEEEEEECCCcEE
Q 001224 576 QGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGIK 649 (1120)
Q Consensus 576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 649 (1120)
.++++++.|+ .|++||++++ ..+..+. .| ...|.+++|+| ++++|++++.||.|+
T Consensus 228 -----------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~ 288 (416)
T 2pm9_A 228 -----------------TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVL 288 (416)
T ss_dssp -----------------TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEE
T ss_pred -----------------CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEE
Confidence 5799999998 9999999986 5555555 44 44799999999 999999999999999
Q ss_pred EEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCC
Q 001224 650 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 729 (1120)
Q Consensus 650 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 729 (1120)
+||+.++ +.+..+
T Consensus 289 ~wd~~~~-~~~~~~------------------------------------------------------------------ 301 (416)
T 2pm9_A 289 LWNPESA-EQLSQF------------------------------------------------------------------ 301 (416)
T ss_dssp EECSSSC-CEEEEE------------------------------------------------------------------
T ss_pred EeeCCCC-ccceee------------------------------------------------------------------
Confidence 9998766 222211
Q ss_pred CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCC-ceEEEeccCceEEEeeecccccCCCCccccccCceeecC
Q 001224 730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 808 (1120)
Q Consensus 730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~ 808 (1120)
..|...|.+++|+|++ ..+++++.|+.|++|++...
T Consensus 302 ------------------------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~------------------- 338 (416)
T 2pm9_A 302 ------------------------PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL------------------- 338 (416)
T ss_dssp ------------------------ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC-------------------
T ss_pred ------------------------cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC-------------------
Confidence 1256678889999999 88999999999999987321
Q ss_pred CCCCcccccCCCCCCCC-----CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEE
Q 001224 809 PSGIMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 883 (1120)
Q Consensus 809 ~~g~~~~~~~~~~~~~~-----~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las 883 (1120)
.... . ... ......+.+.+..++.+.. +.. ... .....|...+.+++|+| |+++||+
T Consensus 339 ---~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~-~~~~~~~~~~~~~~~s~-dg~~la~ 400 (416)
T 2pm9_A 339 ---TNTL----D--EQETETKQQESETDFWNNVSREESKEK--PSV-----FHL-QAPTWYGEPSPAAHWAF-GGKLVQI 400 (416)
T ss_dssp ---CCSS----C--C----------------------CCSC--CCS-----SCC-CCCSTTCCCSCCCEEET-TTEEECB
T ss_pred ---CCCc----c--cccccccccCCcccccccccccccccc--ccc-----ccc-cCCccccCCccceEEee-CCeEEEE
Confidence 1000 0 110 0011112222222222211 100 111 22334677888999999 9999999
Q ss_pred EeCCCcEEEEEeecc
Q 001224 884 GMDDSSIQIYNVRVD 898 (1120)
Q Consensus 884 g~~dg~v~vwd~~~~ 898 (1120)
|+.||.|+||++.+.
T Consensus 401 ~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 401 TPDGKGVSITNPKIS 415 (416)
T ss_dssp CTTSSCBCCBCCCCC
T ss_pred eCCCCeEEEEEeccC
Confidence 999999999998764
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-36 Score=352.37 Aligned_cols=353 Identities=12% Similarity=0.121 Sum_probs=290.3
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 444 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 444 (1120)
..+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+....|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 44568999999996 9999999999999998876432 23445 456666889999999999
Q ss_pred ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeec
Q 001224 445 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524 (1120)
Q Consensus 445 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 524 (1120)
+.||.|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999887554 5679999999999999999 79999999999999999999999999999999999997
Q ss_pred cCCCceEEEEEecCCeEEEEecCCCCCceeeeC---CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224 525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 601 (1120)
Q Consensus 525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 601 (1120)
+ ++.+|++++.||.|++||+.+.+....+.. +...+.++++.+++...........+..++|+|++++|++++.|
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 5 457999999999999999998887777764 56788999998887766555566788889999999999999999
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCC
Q 001224 602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 680 (1120)
Q Consensus 602 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1120)
|.|++||+.+++.+..+.. .+...+.+++|+|++. +|++|+.||.|++||+.++...+..+..+.....
T Consensus 269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v--------- 338 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPI--------- 338 (420)
T ss_dssp SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCE---------
T ss_pred CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCc---------
Confidence 9999999999988877753 3345799999999999 9999999999999999987554555544322111
Q ss_pred cccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccC--Cccccc
Q 001224 681 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP--ENLRAT 758 (1120)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~~ 758 (1120)
.....+++.++++++.|+.+++|++..............+ ...+..
T Consensus 339 --------------------------------~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (420)
T 3vl1_A 339 --------------------------------NNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD 386 (420)
T ss_dssp --------------------------------EEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC
T ss_pred --------------------------------eEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc
Confidence 1123456789999999999999999875444333222111 135788
Q ss_pred cEEEEEEcCCCc---eEEEeccCceEEEeeec
Q 001224 759 KISRLIFTNSGN---AILALASNAIHLLWKWQ 787 (1120)
Q Consensus 759 ~i~~l~~s~~g~---~l~~~~~dg~i~vw~~~ 787 (1120)
.|.+++|+|++. .+++++.+|.+.+|++.
T Consensus 387 ~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 387 AVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred ceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 999999999999 89999999999999873
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.7e-35 Score=323.51 Aligned_cols=251 Identities=18% Similarity=0.276 Sum_probs=214.3
Q ss_pred eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224 359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 438 (1120)
Q Consensus 359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 438 (1120)
...+|...|++++|+|+|+ +|++|+.||.|+||++.+++... .+.+|...|.+++|+|++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDS 77 (312)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCC
Confidence 3446999999999999999 59999999999999999887665 367899999999999999
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 518 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v 518 (1120)
++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++||+++++++..+..|...|
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 152 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence 999999999999999999988665 6889999999999999999 79999999999999999999999999999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
.+++|++ ++.+|++++.||.|++||+.+.+....+... ....+..++|+|++++|+++
T Consensus 153 ~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 153 SAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--------------------DNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCS--------------------SCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEecc--------------------CCCceEEEEECCCCCEEEEE
Confidence 9999865 5579999999999999999876554433211 11245556666666789999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc-CCCCEEEEEECCCcEEEEEccCc
Q 001224 599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+.||.|++||+.+++.+..+..+..........++ +++.+|++|+.||.|++||+.++
T Consensus 211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp ETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred cCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 99999999999999999988876553333334444 68899999999999999998766
No 41
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-35 Score=337.15 Aligned_cols=303 Identities=18% Similarity=0.299 Sum_probs=228.4
Q ss_pred CCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccc------------------cCeEEEEEcCCCCc
Q 001224 424 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV------------------GGVNDIAFSHPNKQ 485 (1120)
Q Consensus 424 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~------------------~~V~~v~~s~d~~~ 485 (1120)
+|.+.|.+++|||||++||+|+ ++.++||++.+++.+. .+.+|. ..|.+++|+|+|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999987 6889999999988665 344332 2499999999999
Q ss_pred eEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEE
Q 001224 486 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 565 (1120)
Q Consensus 486 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 565 (1120)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+.+
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~----------------- 196 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRT----------------- 196 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTT-----------------
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCC-----------------
Confidence 799999999999999999999999999999998888754 345666666666666666543
Q ss_pred EEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001224 566 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 644 (1120)
Q Consensus 566 ~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 644 (1120)
++....+..+ ..+.+++|+| +++++++|+.
T Consensus 197 ----------------------------------------------~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 197 ----------------------------------------------GQCSLTLSIE---DGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp ----------------------------------------------TEEEEEEECS---SCEEEEEECSTTCCEEEEEET
T ss_pred ----------------------------------------------CeeEEEEEcC---CCcEEEEEECCCCCEEEEEcC
Confidence 3333333322 2478899999 8999999999
Q ss_pred CCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCccee
Q 001224 645 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 724 (1120)
Q Consensus 645 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 724 (1120)
|+.|++||+.++ .....+....
T Consensus 228 d~~v~iwd~~~~-~~~~~~~~~~--------------------------------------------------------- 249 (393)
T 1erj_A 228 DRAVRVWDSETG-FLVERLDSEN--------------------------------------------------------- 249 (393)
T ss_dssp TSCEEEEETTTC-CEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEECCCC-cEEEeecccc---------------------------------------------------------
Confidence 999999998776 2211110000
Q ss_pred eccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCce
Q 001224 725 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 804 (1120)
Q Consensus 725 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 804 (1120)
....+|...|.+++|+|+|+.+++++.|+.|++||+....
T Consensus 250 --------------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~-------------- 289 (393)
T 1erj_A 250 --------------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN-------------- 289 (393)
T ss_dssp -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred --------------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC--------------
Confidence 0002366677777777777777777777777777652100
Q ss_pred eecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEE
Q 001224 805 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 884 (1120)
Q Consensus 805 ~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg 884 (1120)
. ..... ....+.+...+.+|...|.+++|+| ++.+|++|
T Consensus 290 --------~-------------~~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg 328 (393)
T 1erj_A 290 --------N-------------KSDSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG 328 (393)
T ss_dssp ---------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEE
T ss_pred --------C-------------ccccc-------------------CCCCCcceEEEecccCcEEEEEECC-CCCEEEEE
Confidence 0 00000 0012344556778999999999999 89999999
Q ss_pred eCCCcEEEEEeecceeeEeecccccceEEEEEcc------CCCEEEEEeCCCCEEEEECCC
Q 001224 885 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 885 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~------d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++.+|++|+.||+|+||++..
T Consensus 329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999999999999999999999999986 688999999999999999865
No 42
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-37 Score=357.47 Aligned_cols=355 Identities=11% Similarity=0.072 Sum_probs=235.9
Q ss_pred CcceeeeccCCCCceEEEEecCC---------CeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccC
Q 001224 354 PKTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 424 (1120)
Q Consensus 354 ~~~~~~~~~h~~~v~~v~~spdg---------~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 424 (1120)
..+...++.+++.|.+|+|+|++ + +||+|+.++..
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~----------------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD----------------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence 44556677789999999999997 4 68888755310
Q ss_pred CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceee-eeeeecccccCeEEEEEcCC------CCceEEEEecCCCcE
Q 001224 425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTI 497 (1120)
Q Consensus 425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d------~~~~~l~s~s~d~~i 497 (1120)
-..+|+++.||+++.|++|+|||+.+++... ....+.+|.+.|.+++|+|+ +. +|++++.||+|
T Consensus 167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 0136899999999999999999998876421 12346678899999999997 45 79999999999
Q ss_pred EEEECCCCce-----------eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC-ceeeeCCCCceeEE
Q 001224 498 KVWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTM 565 (1120)
Q Consensus 498 ~vwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~ 565 (1120)
++||+.++.. ..++.+|...|.+++|++. ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999987642 3478899999999999753 3799999999999999987543 34566677767666
Q ss_pred --EEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001224 566 --AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 643 (1120)
Q Consensus 566 --~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 643 (1120)
+++++|. .+|++++.|++|++||+++++++..+..+.....|.+++|+|+++.+++++
T Consensus 315 ~~~~s~~g~--------------------~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~ 374 (524)
T 2j04_B 315 STAYSDFED--------------------TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD 374 (524)
T ss_dssp EEECCTTSC--------------------CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC
T ss_pred EEEcCCCCC--------------------eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC
Confidence 3445441 579999999999999999988777666543323478999999999999999
Q ss_pred CCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcce
Q 001224 644 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 723 (1120)
Q Consensus 644 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 723 (1120)
.|++|++||++++. ....+
T Consensus 375 ~d~tv~lwd~~~~~-~~~~l------------------------------------------------------------ 393 (524)
T 2j04_B 375 GASSLRAVPSRAAF-AVHPL------------------------------------------------------------ 393 (524)
T ss_dssp SSSEEEEEETTCTT-CCEEE------------------------------------------------------------
T ss_pred CCCcEEEEECcccc-cceee------------------------------------------------------------
Confidence 99999999986651 11000
Q ss_pred eeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCc
Q 001224 724 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 803 (1120)
Q Consensus 724 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 803 (1120)
.+
T Consensus 394 ------------------------------~g------------------------------------------------ 395 (524)
T 2j04_B 394 ------------------------------VS------------------------------------------------ 395 (524)
T ss_dssp ------------------------------EE------------------------------------------------
T ss_pred ------------------------------ec------------------------------------------------
Confidence 01
Q ss_pred eeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecC-----CCCCeEEEEEecCC
Q 001224 804 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-----PPPAATFLAFHPQD 877 (1120)
Q Consensus 804 ~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d 877 (1120)
|...|.+++|+|++++|++|+ |++|++||+... .+..... +...+.+++|+| +
T Consensus 396 -------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~ 454 (524)
T 2j04_B 396 -------------------RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-K 454 (524)
T ss_dssp -------------------CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-S
T ss_pred -------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCC-C
Confidence 444555555555555555555 555555555432 1111110 112466888999 6
Q ss_pred CcEEEEEeCCCcEEEEEee-cceeeEeecccccceEEEEEccCCC---EEEEEeCCCCEEEEECCC
Q 001224 878 NNIIAIGMDDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 878 ~~~lasg~~dg~v~vwd~~-~~~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~v~iWd~~~ 939 (1120)
+..+. ... .+++|+.. ++.++..+.+|...|++|+|+|++. +||+|+.||+|+||++..
T Consensus 455 g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 455 DDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp SCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 66543 222 23344433 4677888999999999999999964 999999999999999876
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.7e-35 Score=322.96 Aligned_cols=291 Identities=21% Similarity=0.368 Sum_probs=243.6
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+.+|...|++++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 478999999999999999999999999999999999887655 6789999999999999999 79999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 580 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 580 (1120)
|+.+++++..+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+....+..|...+.+++|+|++
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------- 161 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG--------- 161 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC---------
Confidence 9999999999999999999999865 45799999999999999999887777776666666666665555
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
+++++++.||.|++||+.+++.+..+... +...+.+++|+|++++|++++.|+.|++||+.++ +..
T Consensus 162 ------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~ 227 (312)
T 4ery_A 162 ------------SLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCL 227 (312)
T ss_dssp ------------SEEEEEETTSCEEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEE
T ss_pred ------------CEEEEEeCCCcEEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEE
Confidence 58999999999999999999888777533 2346889999999999999999999999998765 211
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
..+.+|..
T Consensus 228 ~~~~~~~~------------------------------------------------------------------------ 235 (312)
T 4ery_A 228 KTYTGHKN------------------------------------------------------------------------ 235 (312)
T ss_dssp EEECSSCC------------------------------------------------------------------------
T ss_pred EEEEecCC------------------------------------------------------------------------
Confidence 11111000
Q ss_pred CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224 741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820 (1120)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 820 (1120)
T Consensus 236 -------------------------------------------------------------------------------- 235 (312)
T 4ery_A 236 -------------------------------------------------------------------------------- 235 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEEee
Q 001224 821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 896 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~ 896 (1120)
....+......+++.++++|+ ||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++ .|+.|++|+..
T Consensus 236 --~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 236 --EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp --SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred --ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 001111222335778899988 89999999999999999999999999999999 899999987 69999999854
No 44
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3e-34 Score=370.48 Aligned_cols=526 Identities=11% Similarity=0.055 Sum_probs=369.7
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
+...+.+.+|||+ + |+..+. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4567899999964 4 555554 799999998876543 667999999999999999999
Q ss_pred EEECC------CeEEEEEccCCceeeeeeeecccccCe-------EEEEEcCCCCceEEEEecCC------CcEEEEECC
Q 001224 443 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT 503 (1120)
Q Consensus 443 s~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~d~~~~~l~s~s~d------~~i~vwd~~ 503 (1120)
+++.+ ..|.+|++.+++.. .+..|...+ .+++|+|||+ ++++++.+ ..|++||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~~----~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEIK----RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEEE----ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCeE----EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88654 37999999988632 477888888 9999999998 67777754 458888887
Q ss_pred CCceeEEeeccccCeEEEeeccCCCceEEEEEec------------CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCC
Q 001224 504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL------------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 571 (1120)
Q Consensus 504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 571 (1120)
++.... +..+. ...++|++ | ++++++. +...++|.....+....+..+...+..+
T Consensus 143 ~g~~~~-l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~------ 209 (1045)
T 1k32_A 143 GINFVP-LNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSP------ 209 (1045)
T ss_dssp GTEEEE-CCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEE------
T ss_pred CCCeEE-ecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccce------
Confidence 776543 33332 23456654 5 7888753 2345566433323333334444444444
Q ss_pred CeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001224 572 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650 (1120)
Q Consensus 572 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 650 (1120)
.|+++ ..+++++.++.+.+|.+.. +.....+..+. .+...+|+|||++|+.+. ++.|++
T Consensus 210 ---------------~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~ 269 (1045)
T 1k32_A 210 ---------------VIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYI 269 (1045)
T ss_dssp ---------------EEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred ---------------EEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEE
Confidence 44444 3466777889999998653 44445554433 366789999999998874 889999
Q ss_pred EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224 651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 730 (1120)
Q Consensus 651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 730 (1120)
|++... .. ..+.++...
T Consensus 270 ~d~~~~-~l-~~l~~~~~~------------------------------------------------------------- 286 (1045)
T 1k32_A 270 FNPDTE-KI-EKIEIGDLE------------------------------------------------------------- 286 (1045)
T ss_dssp ECTTTC-CE-EECCCCCCC-------------------------------------------------------------
T ss_pred ecCCce-Ee-eeeccCccc-------------------------------------------------------------
Confidence 987322 11 111110000
Q ss_pred cceeeecccCCCCccceeeccCCccccccEEEEEEc-CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCC
Q 001224 731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 809 (1120)
Q Consensus 731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 809 (1120)
..... ..+...+.+++|+ |+|+.+++++ ++.+.+|+..
T Consensus 287 -------------~~~~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~---------------------- 325 (1045)
T 1k32_A 287 -------------SPEDR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS---------------------- 325 (1045)
T ss_dssp -------------BCCSE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----------------------
T ss_pred -------------ccccc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----------------------
Confidence 00000 1145567889999 9999888877 6788887652
Q ss_pred CCCcccccCCCCCCCC-CccEEEEccCCCEEEEEe-CCcEE-EEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC
Q 001224 810 SGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS-GGKIS-LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 886 (1120)
Q Consensus 810 ~g~~~~~~~~~~~~~~-~v~~l~~s~d~~~l~~~s-dg~i~-vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 886 (1120)
++.... +. .+.. .+..++|+ ||+.+++++ ++.+. +|++.+++.. .+.+|...+..++|+| |+++||+++.
T Consensus 326 ~~~~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~ 398 (1045)
T 1k32_A 326 GTYVLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVAND 398 (1045)
T ss_dssp SSBEEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEET
T ss_pred CCceEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECC
Confidence 222211 11 1555 78899999 999999988 57788 8899876654 3447888899999999 9999999999
Q ss_pred CCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCC----------CEEEEECCCcccccceeeeccCCCCC
Q 001224 887 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----------QLCVWSSDGWEKQKNRFLQIPTGRTP 956 (1120)
Q Consensus 887 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----------~v~iWd~~~~~~~~~~~~~~~~~~~~ 956 (1120)
++.|++||+.+++....+.+|...|.+++|||||++|++++.++ .|++||+.+++. .....+.
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~- 471 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTEN- 471 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSS-
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCC-
Confidence 99999999999988888878999999999999999999887654 899999988541 2222222
Q ss_pred CCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee-----------------------------------------eec
Q 001224 957 TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC-----------------------------------------VKQ 994 (1120)
Q Consensus 957 ~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~-----------------------------------------~~~ 994 (1120)
..+..++|+|||++|+.+ .++...+|+...... .+.
T Consensus 472 --~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 549 (1045)
T 1k32_A 472 --SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 549 (1045)
T ss_dssp --SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred --cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHce
Confidence 256789999999999884 555555555332211 011
Q ss_pred cccCCCCCCeeEEEECCCCcEEEE-------------EEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEe
Q 001224 995 WVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1061 (1120)
Q Consensus 995 ~~~~~h~~~v~~l~~s~dg~~l~s-------------~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~ 1061 (1120)
.....|.+.+..++|+|||+++++ ...+..|++||+.+++..... .+ +. +++|
T Consensus 550 ~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~-----v~--~~~~ 615 (1045)
T 1k32_A 550 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NN-----LT--DLRL 615 (1045)
T ss_dssp EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EE-----EE--EEEE
T ss_pred EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cC-----cc--eEEE
Confidence 112246678999999999998875 123457899999988764322 11 33 7899
Q ss_pred cCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1062 HPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1062 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
+| ||++|++++.| .+++|++.+++
T Consensus 616 S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 616 SA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 99 79999998866 89999998876
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.2e-35 Score=334.61 Aligned_cols=275 Identities=14% Similarity=0.238 Sum_probs=206.2
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
.+...++|.+.|+|++|||||++ ||+|+ +++++||++.+++.+.......... .............+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEEC
Confidence 34556689999999999999995 88876 6899999999998765321100000 000000001112344569999999
Q ss_pred CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224 436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 515 (1120)
Q Consensus 436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 515 (1120)
|||++||+|+.|+.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999987655 6889999999999999999 79999999999999999999988887 56
Q ss_pred cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224 516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 595 (1120)
Q Consensus 516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l 595 (1120)
..+.+++|++ .++.+|++|+.|+.|++||+.+......+.... ....+ +...+.+++|+|++++|
T Consensus 207 ~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-------------~~~~~-h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 207 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-------------ESGTG-HKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------CC-CSSCEEEEEECTTSSEE
T ss_pred CCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-------------cCCCC-CCCCEEEEEECCCCCEE
Confidence 7799999865 256899999999999999998766544432100 00011 12355566666666789
Q ss_pred EEEeCCCeEEEEECCCCc------------eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 596 LAAGDDFSIKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 596 ~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
++++.||.|++||+.+.. +...+.+| ...|.+++|+|++.+|++|+.|+.|++||..++
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999997642 34455544 447999999999999999999999999998776
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.9e-35 Score=331.45 Aligned_cols=320 Identities=12% Similarity=0.160 Sum_probs=258.6
Q ss_pred CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224 425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 504 (1120)
Q Consensus 425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~ 504 (1120)
|.++|.+++|||||++++++..++.+.+|........ ....+|...|.+++|+|+++ ++++++ |+.|++||+.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ---INTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE---EEEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc---ceeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence 5568999999999999999988887777755443222 23457999999999999999 788888 99999999987
Q ss_pred Cce---eEEee--ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeEEec
Q 001224 505 GAK---QYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQG 577 (1120)
Q Consensus 505 ~~~---~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~ 577 (1120)
+.. +..+. +|...|.+++|++ ++.+|++++.||.|++||+.+.+. ...+..+...+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~------------- 146 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA------------- 146 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEE-------------
T ss_pred CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEE-------------
Confidence 753 33443 7899999999865 557999999999999999987652 3334444444444
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224 578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 657 (1120)
++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++++++++.||.|++||+.++.
T Consensus 147 --------~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 147 --------LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp --------EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred --------EEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence 4555555689999999999999999999988887654 479999999999999999999999999986541
Q ss_pred hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeec
Q 001224 658 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 737 (1120)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 737 (1120)
....
T Consensus 217 -~~~~--------------------------------------------------------------------------- 220 (337)
T 1gxr_A 217 -QLQQ--------------------------------------------------------------------------- 220 (337)
T ss_dssp -EEEE---------------------------------------------------------------------------
T ss_pred -eEee---------------------------------------------------------------------------
Confidence 0000
Q ss_pred ccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccccc
Q 001224 738 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 817 (1120)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 817 (1120)
.
T Consensus 221 ----------------------------------------------~--------------------------------- 221 (337)
T 1gxr_A 221 ----------------------------------------------H--------------------------------- 221 (337)
T ss_dssp ----------------------------------------------E---------------------------------
T ss_pred ----------------------------------------------e---------------------------------
Confidence 0
Q ss_pred CCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 818 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 818 ~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
.+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus 222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence 0344567788888888888887 78899999887665 45677899999999999 89999999999999999999
Q ss_pred cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224 897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 937 (1120)
Q Consensus 897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~ 937 (1120)
+++.+.. ..|...|++++|+|++++|++++.||.|++|++
T Consensus 296 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 296 YGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9887744 458899999999999999999999999999996
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.2e-35 Score=340.93 Aligned_cols=346 Identities=12% Similarity=0.097 Sum_probs=259.5
Q ss_pred CceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc
Q 001224 427 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 506 (1120)
Q Consensus 427 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~ 506 (1120)
..+++++|+|+|++|++|+.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 346689999999999999999999999999876543 34555 4455668899999 79999999999999999999
Q ss_pred eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224 507 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 586 (1120)
Q Consensus 507 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~ 586 (1120)
....+.+|...|.+++|++ ++.+|++++.|+.|++||+.+.+....+..|...|.+++|+|++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-------------- 194 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR-------------- 194 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT--------------
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC--------------
Confidence 9999899999999999965 457999999999999999999888888877777777777766664
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC-CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccc
Q 001224 587 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 665 (1120)
Q Consensus 587 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 665 (1120)
+|++++.||.|++||+.+++.+..+..+. +...+.+++|.+++... ++.....
T Consensus 195 -------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~--------- 248 (420)
T 3vl1_A 195 -------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------LHEISTS--------- 248 (420)
T ss_dssp -------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------CGGGCCC---------
T ss_pred -------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------eeecccC---------
Confidence 79999999999999999999998887542 23355666665433211 0000011
Q ss_pred ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcc
Q 001224 666 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 745 (1120)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 745 (1120)
.
T Consensus 249 ~------------------------------------------------------------------------------- 249 (420)
T 3vl1_A 249 K------------------------------------------------------------------------------- 249 (420)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCC
Q 001224 746 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 825 (1120)
Q Consensus 746 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 825 (1120)
+.+++|+|+++.+++++.||.|++||+.. +........ .|..
T Consensus 250 --------------v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------------~~~~~~~~~--~~~~ 291 (420)
T 3vl1_A 250 --------------KNNLEFGTYGKYVIAGHVSGVITVHNVFS----------------------KEQTIQLPS--KFTC 291 (420)
T ss_dssp --------------CCTTCSSCTTEEEEEEETTSCEEEEETTT----------------------CCEEEEECC--TTSS
T ss_pred --------------ccceEEcCCCCEEEEEcCCCeEEEEECCC----------------------CceeEEccc--ccCC
Confidence 00112334444444444444444444321 111111111 2677
Q ss_pred CccEEEEccCCC-EEEEEe-CCcEEEEEcCCCce-eeeecC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc---
Q 001224 826 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--- 898 (1120)
Q Consensus 826 ~v~~l~~s~d~~-~l~~~s-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--- 898 (1120)
.|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.+ + ++++|++|+.||.|++|++...
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence 899999999998 899988 89999999988754 666665 5667888855 5 6789999999999999999863
Q ss_pred ------eeeEeecccccceEEEEEccCCC---EEEEEeCCCCEEEEECCC
Q 001224 899 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 899 ------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~v~iWd~~~ 939 (1120)
.....+.+|.+.|.+++|+|++. .|++++.+|.+.+|+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22334667899999999999999 788888899999999865
No 48
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4e-34 Score=320.91 Aligned_cols=252 Identities=18% Similarity=0.280 Sum_probs=198.8
Q ss_pred eccCCCCceEEEE-----ec-CCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224 360 TLNQGSSPMSMDF-----HP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 433 (1120)
Q Consensus 360 ~~~h~~~v~~v~~-----sp-dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 433 (1120)
+.+|.+.|++++| +| |++ +|++|+.|++|+|||+.+++.... .......+.+|...|.+++
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~~~~ 83 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVSDLA 83 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEEEEE
T ss_pred eccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceEEEE
Confidence 4469999999999 77 888 699999999999999976542110 0001124789999999999
Q ss_pred EcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee-
Q 001224 434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE- 512 (1120)
Q Consensus 434 ~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~- 512 (1120)
|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.. .......
T Consensus 84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~~~~~~~ 157 (343)
T 2xzm_R 84 LSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-ECKFSSAE 157 (343)
T ss_dssp ECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CEEEECCT
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cceeeeec
Confidence 99999999999999999999999988665 6889999999999999999 799999999999999874 4444443
Q ss_pred --ccccCeEEEeeccCCC--------ceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224 513 --GHEAPVYSVCPHHKEN--------IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 582 (1120)
Q Consensus 513 --~h~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 582 (1120)
+|...|.+++|++... +.++++++.||.|++||.. ......+..|...|.+++|+|+
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~------------ 224 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPN------------ 224 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTT------------
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCC------------
Confidence 7889999999976532 2689999999999999943 3334445555555555555554
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 583 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 583 i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+++|++++.||.|++||+. .......+.. . ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 225 ---------g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 225 ---------GKYIATGGKDKKLLIWDILNLTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp ---------SSEEEEEETTCEEEEEESSCCSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred ---------CCEEEEEcCCCeEEEEECCCCcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 4589999999999999994 4445555542 2 259999999999988765 5788999998765
No 49
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.7e-34 Score=337.86 Aligned_cols=342 Identities=17% Similarity=0.293 Sum_probs=264.4
Q ss_pred cccCCCCce-EEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224 421 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 499 (1120)
Q Consensus 421 ~l~~h~~~V-~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v 499 (1120)
.+.+|...| .++.| ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++++ ++++|+.||+|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 477898875 65555 67899999999999999999998665 688999999999999987 4999999999999
Q ss_pred EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCC-eEEecc
Q 001224 500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGF 578 (1120)
Q Consensus 500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~~~~~~ 578 (1120)
||+.+++++..+.+|...|.+++|.+.+++.++++++.||.|++||+.............. ...+...+++. ......
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence 9999999999999999999999998878889999999999999999987665433222211 11122222221 111111
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcch
Q 001224 579 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 658 (1120)
Q Consensus 579 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 658 (1120)
........+++++++++++++.||.|++||+.+++.+..+..+. ..|.+++|+|+++++++|+.||.|++||+.++ +
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~ 343 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG-E 343 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence 11122334457788999999999999999999999999987664 47999999999999999999999999998665 1
Q ss_pred hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224 659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 738 (1120)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 738 (1120)
....+
T Consensus 344 ~~~~~--------------------------------------------------------------------------- 348 (464)
T 3v7d_B 344 LMYTL--------------------------------------------------------------------------- 348 (464)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred EEEEE---------------------------------------------------------------------------
Confidence 11100
Q ss_pred cCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccC
Q 001224 739 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 818 (1120)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 818 (1120)
T Consensus 349 -------------------------------------------------------------------------------- 348 (464)
T 3v7d_B 349 -------------------------------------------------------------------------------- 348 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224 819 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 819 ~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 897 (1120)
.+|...|.+++++ ++++++++ ||.|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus 349 --~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 349 --QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp --CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred --eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence 0155666677775 46777777 7888888888776655554 566788899999 899999998 89999999999
Q ss_pred ceeeEe-ecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224 898 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 937 (1120)
Q Consensus 898 ~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~ 937 (1120)
++.+.. +.+|...|++++|+ ++.++++++.||.+.+|-+
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 998876 67899999999997 4455566677776665543
No 50
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=321.94 Aligned_cols=254 Identities=17% Similarity=0.236 Sum_probs=196.6
Q ss_pred eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCccccccc-ccCCCCceEEEEEcCC
Q 001224 359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAAL-VKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~~spd 437 (1120)
.+.+|.+.|++++|+|+ +||+|+.|++|+|||+.++....... + ..+|...|.+++|+|+
T Consensus 9 ~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~----------------~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDV----------------LDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp EEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEE----------------ECTTCCCSCEEEEEECTT
T ss_pred eeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEE----------------EecCCccCCEEEEEECCC
Confidence 34469999999999998 69999999999999998753211000 1 2349999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCc----eeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC----CceeE
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----GAKQY 509 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~----~~~~~ 509 (1120)
+++||+|+.|++|+|||+.... .......+.+|.+.|.+++|+|+++ +|++|+.|++|++||+.. .+++.
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 9999999999999999996432 1223446889999999999999999 799999999999999943 25678
Q ss_pred EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC--CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224 510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
.+.+|...|.+++|+++ +.+|++++.|++|++||.... .....+..|...|.+++|+|++.
T Consensus 148 ~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------------- 210 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG--------------- 210 (330)
T ss_dssp EECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS---------------
T ss_pred EeccCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC---------------
Confidence 89999999999999764 579999999999999998764 34556666766666666666521
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCC--------ceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 588 FDTTKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 588 ~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+..|++++.|++|++||+.++ .....+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus 211 ----~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 211 ----VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp ----SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ----eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 347999999999999998764 23333332 234579999999765 8899999999999997654
No 51
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.3e-34 Score=333.77 Aligned_cols=317 Identities=20% Similarity=0.323 Sum_probs=267.8
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.||+|++|
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence 46789887543 355679999999999999999999988665 688999999999998 44 79999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 580 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 580 (1120)
|+.+++++..+.+|...|.+++++ +..+++|+.||.|++||+.+.+....+..|...+.++.+ ++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~--------- 249 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG--------- 249 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS---------
T ss_pred ECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC---------
Confidence 999999999999999999999984 257999999999999999988877777777777776666 33
Q ss_pred cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
+++++++.||.|++||+.+++.+..+..+. ..+.+++| ++.++++++.||.|++||+.++ +..
T Consensus 250 ------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~ 312 (445)
T 2ovr_B 250 ------------RRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCI 312 (445)
T ss_dssp ------------SCEEEEETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred ------------CEEEEEcCCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEE
Confidence 469999999999999999999999887654 47888888 8899999999999999998665 111
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
..+.
T Consensus 313 ~~~~---------------------------------------------------------------------------- 316 (445)
T 2ovr_B 313 HTLT---------------------------------------------------------------------------- 316 (445)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224 741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820 (1120)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 820 (1120)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
+|...+.++.+ +++++++++ ||.|++||+.+++.+..+.. |...|++++|++ ++|++|+.||.|++||+.
T Consensus 317 -~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 317 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETT
T ss_pred -CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECC
Confidence 03444555554 456888888 89999999999998888876 788899999964 699999999999999999
Q ss_pred cceeeEee-----cccccceEEEEEccCCCEEEEEeCCCC----EEEEECCC
Q 001224 897 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG 939 (1120)
Q Consensus 897 ~~~~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~----v~iWd~~~ 939 (1120)
+++.+..+ .+|.+.|++++|+|++.+|++|+.||+ |.|||++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99988888 578899999999999999999999998 99999876
No 52
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=322.03 Aligned_cols=292 Identities=13% Similarity=0.166 Sum_probs=225.8
Q ss_pred ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224 754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 833 (1120)
Q Consensus 754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s 833 (1120)
.+|...|.+++|+++ .|++++.|+.|++|++..... .... .+...+|...|.+++|+
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~-~~~~~~h~~~v~~v~~s 67 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLID-VLDETAHKKAIRSVAWR 67 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEE-EECTTCCCSCEEEEEEC
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEE-EEecCCccCCEEEEEEC
Confidence 358899999999988 899999999999999743210 0110 01112388999999999
Q ss_pred cCCCEEEEEe-CCcEEEEEcCC-------CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec----ceee
Q 001224 834 KNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVK 901 (1120)
Q Consensus 834 ~d~~~l~~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~----~~~~ 901 (1120)
|++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++++||+|+.|++|++||+.. .+++
T Consensus 68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 9999999999 99999999853 355677899999999999999 899999999999999999943 3567
Q ss_pred EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC--CcEEEE-EeC
Q 001224 902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHE 978 (1120)
Q Consensus 902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd--g~~la~-~~d 978 (1120)
..+.+|...|++++|+|++.+|++++.|++|++||+.++. ..++....+|.. .|.+++|+|+ +.+|++ +.|
T Consensus 147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEG---TVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSS---CEEEEEECCSSSSCEEEEEETT
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCC---cEEEEEecCCCCeeEEEEEeCC
Confidence 8899999999999999999999999999999999987642 234556667764 8999999998 778888 589
Q ss_pred CeEEEEEcCCc--------eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce--eeeeCCCcccCCC
Q 001224 979 TQLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAG 1048 (1120)
Q Consensus 979 ~~v~i~d~~~~--------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~--~~~~~~~~~~~~g 1048 (1120)
+.|++||+.++ .+...+. ..|...|.+++|++++ +|++++.||.|+|||..+++. ..... .+
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~ 292 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LC 292 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CT
T ss_pred CeEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------cc
Confidence 99999999765 3333332 2489999999999765 899999999999999988743 22221 23
Q ss_pred CCCCCccceEEEecCC-CCCEEEEEeCCCcEEEEecCC
Q 001224 1049 VSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1049 ~~~~~v~~~~i~~~p~-d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
|....+. +++|+|. ++++|++|+.||+|++|++.+
T Consensus 293 h~~~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3332355 8999985 578999999999999999865
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-36 Score=349.37 Aligned_cols=348 Identities=11% Similarity=0.125 Sum_probs=251.8
Q ss_pred ccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccC---CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 422 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 422 l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
..+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +...+....+ +|.+.|.+++|+|+++ +|++|+.|+.|
T Consensus 59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i 135 (437)
T 3gre_A 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQI 135 (437)
T ss_dssp CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEE
Confidence 378999999999999 999999999999999999987 5433222233 5999999999999999 79999999999
Q ss_pred EEEECC---CCceeEEeec------------cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC--CCC
Q 001224 498 KVWDAT---NGAKQYIFEG------------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGR 560 (1120)
Q Consensus 498 ~vwd~~---~~~~~~~~~~------------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~ 560 (1120)
++||+. +++.+..+.+ +...+.++.+...+++.+|++++.||.|++||+++.+....+.. |..
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 999994 6666554443 34455666655567789999999999999999998777766665 445
Q ss_pred ceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc----CCC
Q 001224 561 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDG 636 (1120)
Q Consensus 561 ~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~~~ 636 (1120)
.|.+++|+| ++++|++++.||.|++||+++++++..+... +...|.+++|+ +++
T Consensus 216 ~v~~~~~s~---------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~s~~~ 273 (437)
T 3gre_A 216 AVSSICIDE---------------------ECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-DHAPITHVEVCQFYGKNS 273 (437)
T ss_dssp CEEEEEECT---------------------TSCEEEEEETTSCEEEEETTTTEEEEEEBCT-TCEEEEEEEECTTTCTTE
T ss_pred ceEEEEECC---------------------CCCEEEEEcCCCeEEEEEcCCccEEEEEecC-CCCceEEEEeccccCCCc
Confidence 555555555 4458999999999999999999998888632 22368899555 568
Q ss_pred CEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccc
Q 001224 637 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 716 (1120)
Q Consensus 637 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1120)
.+|++++.||.|++||+.++ +....+.++...
T Consensus 274 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~----------------------------------------------- 305 (437)
T 3gre_A 274 VIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQ----------------------------------------------- 305 (437)
T ss_dssp EEEEEESTTEEEEEEETTTT-EEEEEEESSSSC-----------------------------------------------
T ss_pred cEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCC-----------------------------------------------
Confidence 89999999999999999877 444444433221
Q ss_pred cCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCc
Q 001224 717 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 796 (1120)
Q Consensus 717 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 796 (1120)
+..+.|+|++..+ .+.
T Consensus 306 -------------------------------------------~~~~~~~~~~~~l----~~~----------------- 321 (437)
T 3gre_A 306 -------------------------------------------PSMEHFLPIEKGL----EEL----------------- 321 (437)
T ss_dssp -------------------------------------------CCGGGGSCBCSSG----GGC-----------------
T ss_pred -------------------------------------------Cccceeccccccc----ccc-----------------
Confidence 1111222222211 000
Q ss_pred cccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCC---CeEEEE
Q 001224 797 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP---AATFLA 872 (1120)
Q Consensus 797 ~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~---~i~~l~ 872 (1120)
.+.+..|...|.+++|+ ++++|++++ |+.|++||+.+++....+.+|.. .+....
T Consensus 322 --------------------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 380 (437)
T 3gre_A 322 --------------------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQ 380 (437)
T ss_dssp --------------------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEE
T ss_pred --------------------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEE
Confidence 01111277889999999 788999998 99999999999999888887643 456666
Q ss_pred EecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccC--CCEEEEEeCCCCEEEEE
Q 001224 873 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS 936 (1120)
Q Consensus 873 ~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd 936 (1120)
+++ ...+++.. |+...+.....+..|.+.|++++|+++ +.+|++|+.||.|+||+
T Consensus 381 ~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 381 VTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 766 55554443 333344445666789999999999988 78999999999999995
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.5e-34 Score=318.57 Aligned_cols=211 Identities=20% Similarity=0.299 Sum_probs=178.1
Q ss_pred cccCCCCceEEEEEcCC-CCeEEEEECCCeEEEEEccCCcee--eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 421 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
+|.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 48899999999999997 689999999999999999876432 23456889999999999999999 79999999999
Q ss_pred EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCc-eeeeCCCCceeEEEEcCCCCeEEe
Q 001224 498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
++|+...+........+...+..+.+.+ ++.+|++++.|+.+++||....... .....+...+..+++++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 184 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---- 184 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence 9999999999988888888888887754 4578999999999999998764332 23345566666666666543
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
...+++++.|+.|++||+.+++.+..+..|. ..|.+++|+|++++|++|+.||.|++||+.+.
T Consensus 185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 2467889999999999999999999887664 47999999999999999999999999998654
No 55
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.7e-34 Score=319.98 Aligned_cols=307 Identities=18% Similarity=0.259 Sum_probs=247.6
Q ss_pred eeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 357 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 357 ~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
+..++ +|.+.|++|+|+|++..+|++|+.||+|+|||+.+++....... ..+.+|...|.+++|+
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~--------------~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--------------RALRGHSHFVSDVVIS 95 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE--------------EEECCCSSCEEEEEEC
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee--------------EEEeCCCCCEEEEEEC
Confidence 34444 59999999999998544799999999999999987654322111 2478999999999999
Q ss_pred CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee-EEeecc
Q 001224 436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGH 514 (1120)
Q Consensus 436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~h 514 (1120)
|+|++|++|+.|+.|++|+........ ....+...+..+.+++++. ++++++.|+.+++||+...... ....+|
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~ 170 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH 170 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence 999999999999999999999887554 4567888999999999999 6999999999999998766544 445789
Q ss_pred ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224 515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 594 (1120)
Q Consensus 515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~ 594 (1120)
...+..++|.+.....++++++.|+.|++||+.+......+..|...|.+++|+|++ ++
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~---------------------~~ 229 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG---------------------SL 229 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC---------------------CE
Confidence 999999999888777889999999999999999887777777777766666666665 48
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccC
Q 001224 595 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 674 (1120)
Q Consensus 595 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 674 (1120)
|++++.||.|++||+.+.+.+..+..+. .+.+++|+|++.+++ ++.|+.|++||+.++ .....+.....
T Consensus 230 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~------ 298 (340)
T 4aow_A 230 CASGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLC-AATGPSIKIWDLEGK-IIVDELKQEVI------ 298 (340)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEE-EEETTEEEEEETTTT-EEEEEECCC--------
T ss_pred EEEEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceee-ccCCCEEEEEECCCC-eEEEeccccce------
Confidence 9999999999999999999998887553 589999999887655 556899999998765 22222211000
Q ss_pred CCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCc
Q 001224 675 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 754 (1120)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 754 (1120)
.....
T Consensus 299 ---------------------------------------------------------------------------~~~~~ 303 (340)
T 4aow_A 299 ---------------------------------------------------------------------------STSSK 303 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------------eeecc
Confidence 00002
Q ss_pred cccccEEEEEEcCCCceEEEeccCceEEEeeeccc
Q 001224 755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 789 (1120)
Q Consensus 755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 789 (1120)
+|...|.+++|+|+|++|++++.||.|++|++.++
T Consensus 304 ~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 304 AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 37789999999999999999999999999998543
No 56
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.2e-33 Score=362.35 Aligned_cols=490 Identities=13% Similarity=0.065 Sum_probs=352.9
Q ss_pred cceeeeccCCCCceEEEEecCCCeEEEEEeC------CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCc
Q 001224 355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 428 (1120)
Q Consensus 355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 428 (1120)
.....+..|...|.+++|||||++ ||.++. +..|.+||+.+++.. .+..|...
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~~ 101 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSGK 101 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCEE
T ss_pred CcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCCc
Confidence 345566679999999999999997 554433 237999999887643 26778888
Q ss_pred e-------EEEEEcCCCCeEEEEECC------CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC--
Q 001224 429 V-------NRVIWSPDGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-- 493 (1120)
Q Consensus 429 V-------~~l~~spdg~~las~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~-- 493 (1120)
+ .+++|||||+++++++.+ ..|.+|++.+++... +..+ ....++|+| | ++++++.
T Consensus 102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~~ 171 (1045)
T 1k32_A 102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNTF 171 (1045)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESCS
T ss_pred ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccCC
Confidence 8 999999999977777754 358888888876432 3333 245677999 6 3666542
Q ss_pred ----------CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCce
Q 001224 494 ----------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWC 562 (1120)
Q Consensus 494 ----------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v 562 (1120)
+...++|....+.....+.+|...+.++.|+++ .++++++.|+.+++|.++... ....+..+. .+
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~ 247 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DY 247 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SS
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC---EEEEEEeccCceEEEEEeCCCCcceEecCCC-Cc
Confidence 345677764444555666899999999998643 577788888999999876422 223332222 22
Q ss_pred eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC---------CCCCcCeEEEc
Q 001224 563 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRFN 633 (1120)
Q Consensus 563 ~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s 633 (1120)
... +|+|+|+.++.+ .++.|++||+... .+..+..+. +...+.+++|+
T Consensus 248 ~~~---------------------~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S 304 (1045)
T 1k32_A 248 YPR---------------------HLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFS 304 (1045)
T ss_dssp CEE---------------------EEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEE
T ss_pred cee---------------------eEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeec
Confidence 333 445555567666 4899999999544 344544321 11258899999
Q ss_pred -CCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCC
Q 001224 634 -KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG 712 (1120)
Q Consensus 634 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1120)
|||++|++++ ++.+.+|+..++. ... +
T Consensus 305 ~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~------------------------------------------------- 332 (1045)
T 1k32_A 305 PLDGDLIAFVS-RGQAFIQDVSGTY-VLK-V------------------------------------------------- 332 (1045)
T ss_dssp ECGGGCEEEEE-TTEEEEECTTSSB-EEE-C-------------------------------------------------
T ss_pred CCCCCEEEEEE-cCEEEEEcCCCCc-eEE-c-------------------------------------------------
Confidence 9999999888 7889999876541 000 0
Q ss_pred cccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc-cEEEEEEcCCCceEEEeccCceEE-Eeeecccc
Q 001224 713 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISRLIFTNSGNAILALASNAIHL-LWKWQRTE 790 (1120)
Q Consensus 713 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~i~-vw~~~~~~ 790 (1120)
..+.. .+..++|+ +|+.++.++.++.+. +|++
T Consensus 333 -----------------------------------------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~---- 366 (1045)
T 1k32_A 333 -----------------------------------------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDY---- 366 (1045)
T ss_dssp -----------------------------------------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEET----
T ss_pred -----------------------------------------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEEC----
Confidence 01333 67788999 999888888776666 6665
Q ss_pred cCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeE
Q 001224 791 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT 869 (1120)
Q Consensus 791 ~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~ 869 (1120)
.++.... +. ++...+.+++|+|||++|++++ ++.|++||+.+++....+..|...+.
T Consensus 367 ------------------~~~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 367 ------------------RTGKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp ------------------TTCCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred ------------------CCCCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 2332222 11 2677899999999999999988 78999999999988877778888999
Q ss_pred EEEEecCCCcEEEEEeCCC----------cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224 870 FLAFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 870 ~l~~sp~d~~~lasg~~dg----------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
+++|+| |+++|++++.++ .|++||+.+++ ...+..|...+.+++|+|||++|++++.++...+|+...
T Consensus 425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 999999 899998887654 89999999887 677888988999999999999999999988888887543
Q ss_pred cccccc---ee-----------------------------------eeccCCCCCCCCCCcEEEEccCCcEEEE------
Q 001224 940 WEKQKN---RF-----------------------------------LQIPTGRTPTAQSDTRVQFHQDQIHFLV------ 975 (1120)
Q Consensus 940 ~~~~~~---~~-----------------------------------~~~~~~~~~~~~~i~~~~fspdg~~la~------ 975 (1120)
...... .. +.....+ ...+..++|+|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~---~~~~~~~~~s~dg~~~~~~~~~g~ 579 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD---PGDYRMIIPLESSILIYSVPVHGE 579 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC---CBCEEEEEECSSEEEEEECCCCCS
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCC---CCChhheEEcCCCeEEEEecccCc
Confidence 221000 00 0001111 145778999999997875
Q ss_pred ------E--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224 976 ------V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus 976 ------~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
+ ....+.+||+.+++..... ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 580 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 580 FAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 2457889999888754332 468899999999999999866 89999998887
No 57
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.1e-33 Score=327.93 Aligned_cols=320 Identities=15% Similarity=0.277 Sum_probs=264.7
Q ss_pred eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224 359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 438 (1120)
Q Consensus 359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 438 (1120)
.+.+|.+.|.. +++++|+ ++++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+ +
T Consensus 113 ~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~ 169 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--D 169 (445)
T ss_dssp EEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--T
T ss_pred EecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--C
Confidence 34568877543 3556688 599999999999999999987763 77899999999998 6
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 518 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v 518 (1120)
++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|+.|++||+.+++++..+.+|...|
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v 242 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred CEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence 799999999999999999988665 688999999999996 45 69999999999999999999999999999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
.++++ ++.++++++.||.|++||+.+......+..|...+.++.+ + +.+++++
T Consensus 243 ~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~---------------------~~~l~~~ 295 (445)
T 2ovr_B 243 RCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--D---------------------GIHVVSG 295 (445)
T ss_dssp EEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C---------------------SSEEEEE
T ss_pred EEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--C---------------------CCEEEEE
Confidence 99987 3468999999999999999988777777777766666665 3 3579999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224 599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 678 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1120)
+.||.|++||+.+++.+..+..+.. .+.++.+ +++++++++.||.|++||+.++ +....+.+
T Consensus 296 ~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~------------- 357 (445)
T 2ovr_B 296 SLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQG------------- 357 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECS-------------
T ss_pred eCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEcc-------------
Confidence 9999999999999999998876543 5655655 5779999999999999998665 11111100
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224 679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 758 (1120)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 758 (1120)
T Consensus 358 -------------------------------------------------------------------------------- 357 (445)
T 2ovr_B 358 -------------------------------------------------------------------------------- 357 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224 759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 838 (1120)
Q Consensus 759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~ 838 (1120)
...|...|.+++++ +++
T Consensus 358 -------------------------------------------------------------~~~~~~~v~~~~~~--~~~ 374 (445)
T 2ovr_B 358 -------------------------------------------------------------PNKHQSAVTCLQFN--KNF 374 (445)
T ss_dssp -------------------------------------------------------------TTSCSSCEEEEEEC--SSE
T ss_pred -------------------------------------------------------------CCCCCCCEEEEEEC--CCE
Confidence 00156667778774 578
Q ss_pred EEEEe-CCcEEEEEcCCCceeeee-----cCCCCCeEEEEEecCCCcEEEEEeCCCc----EEEEEeec
Q 001224 839 VMSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV 897 (1120)
Q Consensus 839 l~~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~----v~vwd~~~ 897 (1120)
+++++ ||.|++||+.+++.+..+ .+|...|.+++|+| ++.++|+|+.||. |.|||+..
T Consensus 375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 88888 899999999998888877 46788899999999 9999999999998 99999864
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.7e-33 Score=328.19 Aligned_cols=320 Identities=15% Similarity=0.247 Sum_probs=263.6
Q ss_pred eeeccCCCCc-eEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224 358 TRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 436 (1120)
Q Consensus 358 ~~~~~h~~~v-~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 436 (1120)
..+.+|...| +|+.| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~ 172 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAH 172 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECS
T ss_pred EEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcC
Confidence 3455687775 66666 455 699999999999999999987763 778999999999999
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC--CCCceEEEEecCCCcEEEEECCCCce-------
Q 001224 437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK------- 507 (1120)
Q Consensus 437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~s~d~~i~vwd~~~~~~------- 507 (1120)
++ +|++|+.||+|++||+++++.+. .+.+|.+.|.+++|++ ++. ++++|+.|+.|++||+.++..
T Consensus 173 ~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 173 GG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp TT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------
T ss_pred CC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccccc
Confidence 88 99999999999999999988665 6889999999999995 556 799999999999999987753
Q ss_pred ----------------eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCC
Q 001224 508 ----------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 571 (1120)
Q Consensus 508 ----------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 571 (1120)
+..+.+|...|.++. +++.++++++.||.|++||+.+.+....+..|...+.+++|+|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 322 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred CCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence 556788999998875 334699999999999999999887777777777666666666655
Q ss_pred CeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001224 572 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 651 (1120)
Q Consensus 572 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 651 (1120)
+++++++.||.|++||+.+++.+..+..|. ..|.+++|+ +.++++++.||.|++|
T Consensus 323 ---------------------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 323 ---------------------KRCISASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLS--DKFLVSAAADGSIRGW 377 (464)
T ss_dssp ---------------------TEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred ---------------------CEEEEEeCCCcEEEEECCCCcEEEEEeCCC--CcEEEEEEc--CCEEEEEeCCCcEEEE
Confidence 489999999999999999999999998664 478889987 5899999999999999
Q ss_pred EccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCc
Q 001224 652 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 731 (1120)
Q Consensus 652 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 731 (1120)
|+.++...
T Consensus 378 d~~~~~~~------------------------------------------------------------------------ 385 (464)
T 3v7d_B 378 DANDYSRK------------------------------------------------------------------------ 385 (464)
T ss_dssp ETTTCCEE------------------------------------------------------------------------
T ss_pred ECCCCcee------------------------------------------------------------------------
Confidence 98654100
Q ss_pred ceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCC
Q 001224 732 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 811 (1120)
Q Consensus 732 i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g 811 (1120)
...
T Consensus 386 -----------------------------------------~~~------------------------------------ 388 (464)
T 3v7d_B 386 -----------------------------------------FSY------------------------------------ 388 (464)
T ss_dssp -----------------------------------------EEE------------------------------------
T ss_pred -----------------------------------------eee------------------------------------
Confidence 000
Q ss_pred CcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeee-ecCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001224 812 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSI 890 (1120)
Q Consensus 812 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v 890 (1120)
.+...+..++++++++++++++||.|++||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+
T Consensus 389 ----------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 389 ----------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQS 456 (464)
T ss_dssp ----------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEE
T ss_pred ----------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeE
Confidence 034456678899999999999999999999999999876 67788899999997 46777778888877
Q ss_pred EEEEe
Q 001224 891 QIYNV 895 (1120)
Q Consensus 891 ~vwd~ 895 (1120)
.+|-+
T Consensus 457 ~i~~l 461 (464)
T 3v7d_B 457 FLEIL 461 (464)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66543
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=343.74 Aligned_cols=386 Identities=14% Similarity=0.196 Sum_probs=282.0
Q ss_pred EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeee-cccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCC---Cc-
Q 001224 433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA- 506 (1120)
Q Consensus 433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l-~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~---~~- 506 (1120)
.|+|+++.+++++ .|+.. ++.+. .+ .+|.+.|++++|+| +++ +|++|+.||+|++||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hcCCccccccccc------ccccc-ceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence 4678888888765 37744 44343 56 88999999999999 998 799999999999999876 43
Q ss_pred --eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecC---CCCCceeeeCCCCceeEEEEcCCCCeEEeccccc
Q 001224 507 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 581 (1120)
Q Consensus 507 --~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 581 (1120)
....+ +|...|.+++|++ ++.+|++++.||.|++||+. .+........+ .+..+.+++++ ...
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~ 169 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE 169 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred cceeeec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence 23344 4999999999975 55799999999999999995 44444444333 67777777743 122
Q ss_pred ceeEEE--EcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchh
Q 001224 582 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 659 (1120)
Q Consensus 582 ~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 659 (1120)
.+.++. +++++.++++++.||.|++||+++++.+..+..+.+...|.+++|+|++++|++|+.||.|++||+.++ ..
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~ 248 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL 248 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence 455555 678899999999999999999999999999987434458999999999999999999999999998765 11
Q ss_pred hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224 660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 739 (1120)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 739 (1120)
+..+. +
T Consensus 249 ~~~~~------------------------------------------------------------------------~-- 254 (437)
T 3gre_A 249 IRSWS------------------------------------------------------------------------F-- 254 (437)
T ss_dssp EEEEB------------------------------------------------------------------------C--
T ss_pred EEEEe------------------------------------------------------------------------c--
Confidence 11110 0
Q ss_pred CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224 740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 819 (1120)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 819 (1120)
.|...|.+++++|
T Consensus 255 ---------------~~~~~v~~~~~~~---------------------------------------------------- 267 (437)
T 3gre_A 255 ---------------GDHAPITHVEVCQ---------------------------------------------------- 267 (437)
T ss_dssp ---------------TTCEEEEEEEECT----------------------------------------------------
T ss_pred ---------------CCCCceEEEEecc----------------------------------------------------
Confidence 0222333333322
Q ss_pred CCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224 820 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 898 (1120)
Q Consensus 820 ~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 898 (1120)
+|++++.+|++++ ||.|++||+.+++++..+.+|...+..+.|+| +++.+ .+.
T Consensus 268 -----------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~---------- 321 (437)
T 3gre_A 268 -----------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL---------- 321 (437)
T ss_dssp -----------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC----------
T ss_pred -----------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc----------
Confidence 2345677899988 89999999999999999999999999999999 65544 111
Q ss_pred eeeEeecc--cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224 899 EVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 976 (1120)
Q Consensus 899 ~~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~ 976 (1120)
.+.+ |...|++++|+ ++++|++|+.|+.|++||+.+++.. ....++......+....++++..+++..
T Consensus 322 ----~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 322 ----NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS-----KAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp ----CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC-----EEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred ----eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc-----eEEecccccCceEEEEEeecceEEEEEe
Confidence 1445 99999999999 8899999999999999999987643 2223332222345566666666555443
Q ss_pred eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCC--CcEEEEEEcCCcEEEEE
Q 001224 977 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1029 (1120)
Q Consensus 977 ~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~~~Dg~v~iwd 1029 (1120)
|+.......... ..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 392 -------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 -------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 222233333322 368999999999998 88999999999999995
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-35 Score=342.71 Aligned_cols=244 Identities=9% Similarity=0.099 Sum_probs=183.7
Q ss_pred EecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC------CCeEEEEE
Q 001224 372 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD------GSLFGVAY 445 (1120)
Q Consensus 372 ~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd------g~~las~~ 445 (1120)
.+|+++ ++++|+.|++|+|||+.+++..... ...+.+|.+.|.+++|+|+ +.+||+|+
T Consensus 169 ~~~~~~-~laS~s~D~tI~iWd~~~~~~~~~~---------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s 232 (524)
T 2j04_B 169 LNEHLE-MFDKEKHSSCIQIFKMNTSTLHCVK---------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS 232 (524)
T ss_dssp --------------CEEEEEEEEETTTCCEEE---------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred cchhhh-hhccCCCCceEEEEEccCCCCCceE---------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence 589999 5899999999999999887643210 0125568889999999997 67999999
Q ss_pred CCCeEEEEEccCCcee--------eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc-eeEEeecccc
Q 001224 446 SRHIVQIYSYHGGDEV--------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA 516 (1120)
Q Consensus 446 ~dg~v~iwd~~~~~~~--------~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~h~~ 516 (1120)
.||+|+|||+.++... .....+.+|...|++++|++++ .|++|+.||+|++||+.++. +...+.+|..
T Consensus 233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~ 309 (524)
T 2j04_B 233 QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS 309 (524)
T ss_dssp TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSS
T ss_pred cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccc
Confidence 9999999999876422 1234678999999999999864 59999999999999999774 4567899999
Q ss_pred CeEEEeeccCCCc-eEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224 517 PVYSVCPHHKENI-QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 595 (1120)
Q Consensus 517 ~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l 595 (1120)
.|.++++..++++ .+|++++.|++|++||+++......+..+.. ...+..++|+|++..+
T Consensus 310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~-------------------~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR-------------------GSNLVPVVYCPQIYSY 370 (524)
T ss_dssp CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS-------------------CCSCCCEEEETTTTEE
T ss_pred cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc-------------------cCcccceEeCCCcCeE
Confidence 9999954335555 7999999999999999987655444433221 0123445555555689
Q ss_pred EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
++++.|++|++||++++.++..+.+|. ..|.+++|+|+|++|++|+.||+|++||+..
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVSRE--TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEECS--SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred EEeCCCCcEEEEECcccccceeeecCC--CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 999999999999999999888887654 4899999999999999999999999998643
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=318.82 Aligned_cols=302 Identities=16% Similarity=0.241 Sum_probs=253.8
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999988665 6889999999999999999 79999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecC-----CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEE
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 575 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 575 (1120)
|+.+++++..+. |...|.+++|++ ++.++++++.+ +.|++||+........+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~-------------------- 158 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHEL-------------------- 158 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence 999999999988 889999999865 55799999988 99999998764332211
Q ss_pred ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
.. .....+..+..+.....+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 --------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 159 --------------------TK------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp --------------------EE------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred --------------------cc------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 00 0112233333343344689999999999999999999999999865
Q ss_pred cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224 656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 735 (1120)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 735 (1120)
+......
T Consensus 207 ~~~~~~~------------------------------------------------------------------------- 213 (369)
T 3zwl_B 207 NYEYVDS------------------------------------------------------------------------- 213 (369)
T ss_dssp TTEEEEE-------------------------------------------------------------------------
T ss_pred CcEeEEE-------------------------------------------------------------------------
Confidence 3110000
Q ss_pred ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224 736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 815 (1120)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 815 (1120)
+
T Consensus 214 ------------------------------------------------~------------------------------- 214 (369)
T 3zwl_B 214 ------------------------------------------------I------------------------------- 214 (369)
T ss_dssp ------------------------------------------------E-------------------------------
T ss_pred ------------------------------------------------E-------------------------------
Confidence 0
Q ss_pred ccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC------
Q 001224 816 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 888 (1120)
Q Consensus 816 ~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------ 888 (1120)
..|...|.+++|+|++++|++++ |+.|++||+.+++.+..+. +...+.+++|+| +++++++++.++
T Consensus 215 -----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 215 -----DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT 287 (369)
T ss_dssp -----ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred -----ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence 01566788888999999999888 8999999999988888887 777899999999 899999999888
Q ss_pred --------cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcc
Q 001224 889 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 941 (1120)
Q Consensus 889 --------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~ 941 (1120)
.+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|+++.+.
T Consensus 288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 89999999999999999999999999999999999999999999999998754
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-33 Score=348.78 Aligned_cols=253 Identities=21% Similarity=0.296 Sum_probs=212.4
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
+.+|.+.|++|+|+|++..+|++|+.||+|+|||+.+....... ....+.+|...|.+++|+|+|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTTSS
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCCCC
Confidence 44699999999999988668999999999999999765322100 0114789999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe---ecccc
Q 001224 440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA 516 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~---~~h~~ 516 (1120)
+|++|+.||+|+|||+.++..++ .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .+|..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999999999999987665 6889999999999999999 6999999999999997655443332 46889
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
.|.+++|+++.....+++++.|++|++||++.......+..|...|.+++|+|+| ++|+
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg---------------------~~l~ 577 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG---------------------SLCA 577 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SEEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC---------------------CEEE
Confidence 9999999877655789999999999999999877777777777766666666665 4899
Q ss_pred EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+++.||.|++||+.+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.++
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred EEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 9999999999999999988777643 3589999999999888776 466999999887
No 63
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=323.95 Aligned_cols=356 Identities=14% Similarity=0.159 Sum_probs=248.1
Q ss_pred CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCceeeee
Q 001224 386 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQH 464 (1120)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~ 464 (1120)
++.++||+++.++... ++.+|.+.|.+++|+| ++++||+|+.||.|++||+.+++.....
T Consensus 22 ~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 82 (408)
T 4a11_B 22 ESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY 82 (408)
T ss_dssp HHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE
T ss_pred cCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE
Confidence 4567777777665544 4778999999999999 9999999999999999999988654422
Q ss_pred ee----------ecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCC-CceEE
Q 001224 465 LE----------IDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFI 532 (1120)
Q Consensus 465 ~~----------l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l 532 (1120)
.. ..+|...|.+++|+| ++. ++++++.|+.|++||+.+++.+..+. +...+.++++.+.. ++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp EECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEE
T ss_pred eccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEE
Confidence 11 135999999999999 555 79999999999999999999988887 77889999887643 45699
Q ss_pred EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001224 533 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 612 (1120)
Q Consensus 533 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 612 (1120)
++++.||.|++||+.+......+..|...|.+++|+|++. ..+++++.||.|++||++++
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~ll~~~~~dg~i~i~d~~~~ 219 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--------------------YILATASADSRVKLWDVRRA 219 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT--------------------TEEEEEETTSCEEEEETTCS
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC--------------------cEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999888888887877777777777765 25889999999999999877
Q ss_pred c-eeEEEec-------------CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224 613 Q-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 678 (1120)
Q Consensus 613 ~-~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1120)
. .+..+.. ..+...|.+++|+|++++|++++.||.|++||+.++.. ......+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~--------- 289 (408)
T 4a11_B 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCN--------- 289 (408)
T ss_dssp SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCC---------
T ss_pred CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceeccccccc---------
Confidence 6 4444421 23345789999999999999999999999999987621 1110000000
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224 679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 758 (1120)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 758 (1120)
.
T Consensus 290 -----------------------------------------------------------------------------~-- 290 (408)
T 4a11_B 290 -----------------------------------------------------------------------------N-- 290 (408)
T ss_dssp -----------------------------------------------------------------------------C--
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224 759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 838 (1120)
Q Consensus 759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~ 838 (1120)
..............+.+
T Consensus 291 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 291 ---------------------------------------------------------------SKKGLKFTVSCGCSSEF 307 (408)
T ss_dssp ---------------------------------------------------------------CSSCCCCEECCSSSSCE
T ss_pred ---------------------------------------------------------------ccccceeEEecCCCceE
Confidence 00000111112233445
Q ss_pred EEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEcc
Q 001224 839 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 918 (1120)
Q Consensus 839 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 918 (1120)
++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+
T Consensus 308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~ 383 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNP 383 (408)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC---------------------
T ss_pred EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccc
Confidence 5555599999999999999999999999999999999 8999999999999999999998877655443322 23333
Q ss_pred -CCCEEEEEeCCCCEEEEECCC
Q 001224 919 -ALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 919 -d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
+...+.+.+.|+.+++|+...
T Consensus 384 ~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 384 AFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------
T ss_pred ccceeecccCccCceeecCCcc
Confidence 334556777899999998654
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.1e-34 Score=327.11 Aligned_cols=318 Identities=14% Similarity=0.193 Sum_probs=222.5
Q ss_pred cccCCCCceEEEEEcCC----CCeEEEEECCCeEEEEEccCCceeeeeeeec--ccccCeEEEEEcCC----CCceEEEE
Q 001224 421 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT 490 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spd----g~~las~~~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d----~~~~~l~s 490 (1120)
+..+|.++|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46689999999999984 5566777777799999999887665443332 26788999999999 55 7999
Q ss_pred ecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee---eCCCCceeEEEE
Q 001224 491 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY 567 (1120)
Q Consensus 491 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~ 567 (1120)
|+.||.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+.+.+....+ ..+...
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------ 163 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------ 163 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence 999999999999999999999999999999999762 4579999999999999999865443332 122222
Q ss_pred cCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001224 568 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 647 (1120)
Q Consensus 568 s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 647 (1120)
|.+++|+|++++|++++.||.
T Consensus 164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS 184 (366)
T ss_dssp -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence 444555555555555555556
Q ss_pred EEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeecc
Q 001224 648 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 727 (1120)
Q Consensus 648 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 727 (1120)
|++||+.++ +....+.... .+.+. +..+....
T Consensus 185 i~i~d~~~~-~~~~~~~~~~------------~~~~~-----------------------------------~~~~~~~~ 216 (366)
T 3k26_A 185 LKLWRINSK-RMMNAIKESY------------DYNPN-----------------------------------KTNRPFIS 216 (366)
T ss_dssp EEEEESCSH-HHHHHHHHHH------------TCCGG-----------------------------------GCSSCCCC
T ss_pred EEEEECCCC-ccccccceeE------------EecCC-----------------------------------CCcccccc
Confidence 666655544 2222221100 00100 00000000
Q ss_pred CCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeec
Q 001224 728 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 807 (1120)
Q Consensus 728 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 807 (1120)
.......+..
T Consensus 217 ~~~~~~~~~~---------------------------------------------------------------------- 226 (366)
T 3k26_A 217 QKIHFPDFST---------------------------------------------------------------------- 226 (366)
T ss_dssp EEECCCSEEE----------------------------------------------------------------------
T ss_pred eeeccCcccc----------------------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCc--------------eeeeecCCCCCeEEEE
Q 001224 808 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK--------------TMATFMPPPPAATFLA 872 (1120)
Q Consensus 808 ~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~--------------~~~~~~~~~~~i~~l~ 872 (1120)
. ..|...|.+++|+ ++++++++ |+.|++||+.++. .+..+..|...|++++
T Consensus 227 ----------~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (366)
T 3k26_A 227 ----------R--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292 (366)
T ss_dssp ----------C--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred ----------c--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence 0 0155556666665 44566655 5666666665443 3667778899999999
Q ss_pred EecCC--CcEEEEEeCCCcEEEEEeecce----eeEeeccc--ccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224 873 FHPQD--NNIIAIGMDDSSIQIYNVRVDE----VKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 873 ~sp~d--~~~lasg~~dg~v~vwd~~~~~----~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
|+| + +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999 7 9999999999999999999875 34477877 79999999999999999999999999999853
No 65
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.2e-33 Score=318.03 Aligned_cols=301 Identities=15% Similarity=0.199 Sum_probs=243.6
Q ss_pred eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc------eeEEeeccccCeEEEeeccC--CCc---eE
Q 001224 463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QF 531 (1120)
Q Consensus 463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~~~--~~~---~~ 531 (1120)
....+.+|.+.|++++|+| + +|++|+.||.|++||+.+++ .+..+.+|...|.+++|+++ .++ .+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 3446889999999999998 4 79999999999999999988 78899999999999999764 236 79
Q ss_pred EEEEecCCeEEEEecCCCCC-----ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc----CCCCE-EEEEeCC
Q 001224 532 IFSTALDGKIKAWLYDNLGS-----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTKNR-FLAAGDD 601 (1120)
Q Consensus 532 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~----~~~~~-l~~~~~d 601 (1120)
|++++.||.|++||+.+... ...+..+... .....+.+++|+ |++++ |++++.|
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD----------------MKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT----------------GGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccc----------------cCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 99999999999999988765 4444444100 002345555555 56668 9999999
Q ss_pred CeEEEEECCC------CceeE-----EEec-----CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccc
Q 001224 602 FSIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 665 (1120)
Q Consensus 602 g~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 665 (1120)
|.|++||+.+ ++.+. .+.. ..+...+.+++|+|++ ++++++.||.|++||+.++ +....+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 225 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFES 225 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEEC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEec
Confidence 9999999998 76666 6644 3445579999999999 9999999999999998654 11100000
Q ss_pred ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcc
Q 001224 666 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 745 (1120)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 745 (1120)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCC--
Q 001224 746 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-- 823 (1120)
Q Consensus 746 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~-- 823 (1120)
. .+|
T Consensus 226 ------------------------------------------------------------------------~--~~h~~ 231 (397)
T 1sq9_A 226 ------------------------------------------------------------------------Q--HSMIN 231 (397)
T ss_dssp ------------------------------------------------------------------------C--C---C
T ss_pred ------------------------------------------------------------------------c--ccccc
Confidence 0 004
Q ss_pred -CCCccEEEEccCCCEEEEEe-C---CcEEEEEcCCCceeeeecC-------------CCCCeEEEEEecCCCcEEEEEe
Q 001224 824 -EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNIIAIGM 885 (1120)
Q Consensus 824 -~~~v~~l~~s~d~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~d~~~lasg~ 885 (1120)
...|.+++|+|++++|++++ | +.|++||+.+++.+..+.. |...|.+++|+| ++++|++|+
T Consensus 232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 310 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAG 310 (397)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEE
T ss_pred cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEe
Confidence 66788888888888888887 7 8899999988888888887 899999999999 899999999
Q ss_pred CCCcEEEEEeecceeeEeec------cc---------------ccceEEEEEccCC----------CEEEEEeCCCCEEE
Q 001224 886 DDSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADSQLCV 934 (1120)
Q Consensus 886 ~dg~v~vwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~d~----------~~l~s~s~Dg~v~i 934 (1120)
.||.|++||+.+++.+..+. +| ...|++++|+|++ ++|++++.||.|++
T Consensus 311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence 99999999999999999998 88 9999999999998 79999999999999
Q ss_pred EECCCc
Q 001224 935 WSSDGW 940 (1120)
Q Consensus 935 Wd~~~~ 940 (1120)
|++.++
T Consensus 391 w~~~~g 396 (397)
T 1sq9_A 391 FREAGG 396 (397)
T ss_dssp EEEEC-
T ss_pred EEcCCC
Confidence 999875
No 66
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.2e-33 Score=326.12 Aligned_cols=241 Identities=15% Similarity=0.246 Sum_probs=187.5
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 438 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg 438 (1120)
...|...|+||+|+|....+||+|+.||+|+|||+.+++..... .+.+|.+.|++|+|+| ++
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~ 177 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNT 177 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCT
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCC
Confidence 34588999999999966557999999999999999887643311 2568999999999998 78
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 518 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v 518 (1120)
++|++|+.||+|+|||++++.. ........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+|...|
T Consensus 178 ~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v 253 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKV 253 (435)
T ss_dssp TEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCE
T ss_pred CEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceE
Confidence 9999999999999999987643 32223334455789999999999 79999999999999975 56678889999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee---eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 595 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l 595 (1120)
.+++|++..+ .++++++.|+.|++||++.......+ ..|...|.+++|+|+| ++|
T Consensus 254 ~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg---------------------~~l 311 (435)
T 4e54_B 254 THVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG---------------------ARL 311 (435)
T ss_dssp EEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS---------------------SEE
T ss_pred EeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC---------------------Cee
Confidence 9999976543 58899999999999999876544322 3455555555555554 589
Q ss_pred EEEeCCCeEEEEECCCCceeEEEecCCCC----CCcCeEEEcCCCCEEEEEE
Q 001224 596 LAAGDDFSIKFWDMDSVQLLTSIDADGGL----PASPRIRFNKDGCLLAVST 643 (1120)
Q Consensus 596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~ 643 (1120)
++++.||.|++||+.++.....+..+... ..+....|+|++.+++++.
T Consensus 312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
T 4e54_B 312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363 (435)
T ss_dssp EEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC
T ss_pred EEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEE
Confidence 99999999999999999887777654321 1233456677666665553
No 67
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-32 Score=339.56 Aligned_cols=211 Identities=18% Similarity=0.283 Sum_probs=175.4
Q ss_pred cccCCCCceEEEEEcCC-CCeEEEEECCCeEEEEEccCCcee--eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224 421 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i 497 (1120)
.+.+|.+.|++++|+|+ +++|++|+.|++|+||++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 47899999999999986 479999999999999999864321 12346889999999999999999 79999999999
Q ss_pred EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee---eCCCCceeEEEEcCCCCeE
Q 001224 498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT 574 (1120)
Q Consensus 498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~g~~~ 574 (1120)
+|||+.++.++..+.+|...|.+++|++ ++.+|++++.|++|++||.......... ..|...|.+++|+|++.
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-- 530 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL-- 530 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence 9999999999999999999999999865 4578999999999999997543211111 23444455555555432
Q ss_pred EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224 575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 654 (1120)
...+++++.|+.|++||+.+++....+..|. ..|.+++|+|++++|++++.||.|++||+.
T Consensus 531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 1479999999999999999999988887664 479999999999999999999999999987
Q ss_pred Cc
Q 001224 655 DG 656 (1120)
Q Consensus 655 ~~ 656 (1120)
++
T Consensus 592 ~~ 593 (694)
T 3dm0_A 592 EG 593 (694)
T ss_dssp TT
T ss_pred CC
Confidence 66
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-32 Score=306.86 Aligned_cols=306 Identities=12% Similarity=0.132 Sum_probs=243.5
Q ss_pred cceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224 355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 434 (1120)
Q Consensus 355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 434 (1120)
.+...+.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~ 82 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDV 82 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEE
Confidence 34555677999999999999999 599999999999999999887763 7789999999999
Q ss_pred cCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC-----CcEEEEECCCCc---
Q 001224 435 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA--- 506 (1120)
Q Consensus 435 spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d-----~~i~vwd~~~~~--- 506 (1120)
+|++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+..+.
T Consensus 83 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 83 DCFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccce
Confidence 9999999999999999999999988665 344 888999999999999 78999888 999999998664
Q ss_pred --------eeEEeecccc--CeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEE
Q 001224 507 --------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTY 575 (1120)
Q Consensus 507 --------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~ 575 (1120)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+.+ ......+..+...+.+++|+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 230 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL---- 230 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS----
T ss_pred eecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC----
Confidence 3455566666 899999865 557999999999999999987 45555556666655555555554
Q ss_pred ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
++|++++.||.|++||+.+++.+..+... ..+.+++|+|+++++++++.++.+.+|....
T Consensus 231 -----------------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 231 -----------------TYFITSSRDTNSFLVDVSTLQVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp -----------------SEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECCC---------
T ss_pred -----------------CEEEEecCCceEEEEECCCCceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 58999999999999999999999888733 3589999999999999999998766664422
Q ss_pred cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224 656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 735 (1120)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 735 (1120)
. .....+++|
T Consensus 291 ~----------------------------------------------------------------------~~~~~i~~~ 300 (369)
T 3zwl_B 291 N----------------------------------------------------------------------EGKFEARFY 300 (369)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred C----------------------------------------------------------------------CCcceeEEE
Confidence 2 001245667
Q ss_pred ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeeccc
Q 001224 736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 789 (1120)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 789 (1120)
++........ + .+|...|.+++|+|+++.|++++.||.|++|++...
T Consensus 301 d~~~~~~~~~---~----~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 301 HKIFEEEIGR---V----QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ETTTCCEEEE---E----ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ecCCCcchhh---e----ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 6654322111 1 247889999999999999999999999999998654
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.5e-33 Score=319.59 Aligned_cols=362 Identities=12% Similarity=0.159 Sum_probs=248.0
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224 600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 678 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1120)
.++.+++|++..++....+..|. ..|.+++|+| ++++|++++.||.|++||+.++. ....+.....
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~---------- 87 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHG--GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAV---------- 87 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCS--SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEE----------
T ss_pred ccCcceeeccccCcceeeeeccC--CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc-ccceEecccc----------
Confidence 35567888888888777777654 4899999999 99999999999999999998762 2211110000
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224 679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 758 (1120)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 758 (1120)
.... .....+|..
T Consensus 88 --------------------------------------------------------~~~~-----------~~~~~~~~~ 100 (408)
T 4a11_B 88 --------------------------------------------------------CSIG-----------RDHPDVHRY 100 (408)
T ss_dssp --------------------------------------------------------EEEC-----------TTCTTCCSS
T ss_pred --------------------------------------------------------cccc-----------ccccccCCC
Confidence 0000 000024788
Q ss_pred cEEEEEEcC-CCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC--
Q 001224 759 KISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN-- 835 (1120)
Q Consensus 759 ~i~~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d-- 835 (1120)
.|.+++|+| ++..+++++.||.|++|++... ...... .+...+.++++++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------~~~~~~----~~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------QTADVF----NFEETVYSHHMSPVST 154 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------EEEEEE----ECSSCEEEEEECSSCS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------ccceec----cCCCceeeeEeecCCC
Confidence 999999999 7789999999999999987432 211110 15677889999884
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEEeecce-eeEee-------
Q 001224 836 -DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL------- 904 (1120)
Q Consensus 836 -~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~~-~~~~l------- 904 (1120)
+.++++++ ++.|++||+.+++.+..+..|...|++++|+| ++. +|++|+.||.|++||+.++. .+..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 44899988 89999999999999999999999999999999 666 69999999999999998754 33333
Q ss_pred --------cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224 905 --------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 976 (1120)
Q Consensus 905 --------~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~ 976 (1120)
.+|...|++++|+|++++|++++.||.|++||+.+++.............. ............+.+++++
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEE
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEe
Confidence 679999999999999999999999999999999987643221111111111 1122333344456666668
Q ss_pred eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccc
Q 001224 977 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1056 (1120)
Q Consensus 977 ~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 1056 (1120)
.++.|++||+.+++.+..+. +|...|++++|+|++++|++++.||.|++||+.+++.+..... . ..
T Consensus 312 ~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~----~-------~~- 377 (408)
T 4a11_B 312 YGSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE----T-------TT- 377 (408)
T ss_dssp ETTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred cCCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc----e-------Ee-
Confidence 99999999999999988876 7899999999999999999999999999999999988765431 0 01
Q ss_pred eEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1057 LVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1057 ~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
...+.+.+...+.+.+.|+.+++|+...
T Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 378 -KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -----------------------------
T ss_pred -ccccccccceeecccCccCceeecCCcc
Confidence 1233443455677788899999998653
No 70
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.1e-32 Score=299.85 Aligned_cols=254 Identities=16% Similarity=0.206 Sum_probs=206.7
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC--ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 436 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp- 436 (1120)
..+|.+.|++++|+|+|++ ||+|+.|++|+|||+.++ +.+. .+.+|.++|.+++|+|
T Consensus 5 ~~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~ 64 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 64 (297)
T ss_dssp CCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCG
T ss_pred ccCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCC
Confidence 3469999999999999995 999999999999999753 2222 4789999999999987
Q ss_pred -CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEEEEECCCCc--eeEEe
Q 001224 437 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 511 (1120)
Q Consensus 437 -dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~ 511 (1120)
+|++||+|+.|++|+|||+++++.. ....+.+|...|.+++|+|+ +. +|++++.|+.|++||++++. ....+
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~ 141 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIII 141 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeee
Confidence 4899999999999999999987522 23357789999999999998 67 79999999999999998763 24677
Q ss_pred eccccCeEEEeeccCC-----------CceEEEEEecCCeEEEEecCCCC----CceeeeCCCCceeEEEEcCCCCeEEe
Q 001224 512 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 512 ~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
.+|...|.+++|++.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++.
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~---- 217 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 217 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----
Confidence 8999999999998752 35699999999999999998765 3345666777777777777641
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 653 (1120)
.+.+|++++.|++|++||+.+.. ....+..+.+...|.+++|+|+|++|++++.|+.|++|+.
T Consensus 218 --------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 218 --------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred --------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 02479999999999999998753 1223322334557899999999999999999999999997
Q ss_pred c
Q 001224 654 S 654 (1120)
Q Consensus 654 ~ 654 (1120)
.
T Consensus 284 ~ 284 (297)
T 2pm7_B 284 N 284 (297)
T ss_dssp C
T ss_pred C
Confidence 5
No 71
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.8e-32 Score=313.32 Aligned_cols=302 Identities=12% Similarity=0.123 Sum_probs=235.2
Q ss_pred cccCCCCceEEEEEcCCC-CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEE
Q 001224 421 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIK 498 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg-~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~ 498 (1120)
.+.+|...|.+++|+|++ ++||+|+.||.|+|||+.+++... ...+.+|.+.|.+++|+| ++. +|++++.|+.|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~d~~i~ 144 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTN--QLFVSSIRGATT 144 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-EECCCSTTCBEEEEEEETTEEE--EEEEEETTTEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-eeecCCcCCceeEEEeCCCCCC--EEEEEeCCCEEE
Confidence 367899999999999999 999999999999999999887553 223457999999999999 556 799999999999
Q ss_pred EEECCCCceeEEeecc---ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEE
Q 001224 499 VWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 575 (1120)
Q Consensus 499 vwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 575 (1120)
+||+.+ ..+..+..| ...|.+++|++ ++.+|++++.|+.|++||++ .+....+..|...|.+++|+|++.
T Consensus 145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~--- 217 (383)
T 3ei3_B 145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD--- 217 (383)
T ss_dssp EEETTS-CEEEEEECCCCSSCCEEEEEEET--TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT---
T ss_pred EEECCC-CceEEEeccCCCCCCeEEEEECC--CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC---
Confidence 999985 555666544 48899999875 45799999999999999994 455666666666666666666553
Q ss_pred ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC----CceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEE
Q 001224 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 650 (1120)
Q Consensus 576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 650 (1120)
.++++++.|+.|++||+.+ +..+..+. + ...|.+++|+| ++.+|++++.|+.|++
T Consensus 218 -----------------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~--~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 218 -----------------WLMATSSVDATVKLWDLRNIKDKNSYIAEMP-H--EKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp -----------------TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-C--SSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred -----------------CEEEEEeCCCEEEEEeCCCCCcccceEEEec-C--CCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 2799999999999999987 56666663 3 34799999999 9999999999999999
Q ss_pred EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224 651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 730 (1120)
Q Consensus 651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 730 (1120)
||+.++ .....+.++....
T Consensus 278 wd~~~~-~~~~~~~~~~~~~------------------------------------------------------------ 296 (383)
T 3ei3_B 278 YSSYDW-SKPDQIIIHPHRQ------------------------------------------------------------ 296 (383)
T ss_dssp EETTBT-TSCSEEEECCBCC------------------------------------------------------------
T ss_pred EECCCC-ccccccccccccc------------------------------------------------------------
Confidence 999877 3333332221100
Q ss_pred cceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCC
Q 001224 731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 810 (1120)
Q Consensus 731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 810 (1120)
..|...+. +.|+|++
T Consensus 297 -----------------------~~~~~~~~-~~~~p~~----------------------------------------- 311 (383)
T 3ei3_B 297 -----------------------FQHLTPIK-ATWHPMY----------------------------------------- 311 (383)
T ss_dssp -----------------------CTTSCCCC-CEECSSS-----------------------------------------
T ss_pred -----------------------cccccceE-EeccCCC-----------------------------------------
Confidence 00111221 2333333
Q ss_pred CCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecC--CCCCeEEEEEecCCCcEEEEEeCC
Q 001224 811 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDD 887 (1120)
Q Consensus 811 g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~d 887 (1120)
.+..++++|++++ +++ |+.|++||+.+++.+..+.+ |...+.+++|+| ++++|++|+ |
T Consensus 312 ---------------~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d 372 (383)
T 3ei3_B 312 ---------------DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-G 372 (383)
T ss_dssp ---------------SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-T
T ss_pred ---------------CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-C
Confidence 3445778889888 666 89999999999999999876 456788889999 899999997 9
Q ss_pred CcEEEEEeec
Q 001224 888 SSIQIYNVRV 897 (1120)
Q Consensus 888 g~v~vwd~~~ 897 (1120)
|.|++||+.+
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999864
No 72
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=309.07 Aligned_cols=299 Identities=11% Similarity=0.159 Sum_probs=235.7
Q ss_pred eecccccCeEEEEEcCCCCceEEEEecC---CCcEEEEECCCCceeEEe-eccccCeEEEeeccCC-CceEEEEEecCCe
Q 001224 466 EIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE-NIQFIFSTALDGK 540 (1120)
Q Consensus 466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~---d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~ 540 (1120)
.+.+|...|.+++|+|++.. ++++|+. |+.|++||+.+++..... .+|...|.+++|+++. ++.+|++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 45689999999999999975 5667776 999999999998876543 3799999999997752 2579999999999
Q ss_pred EEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEE
Q 001224 541 IKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSI 618 (1120)
Q Consensus 541 i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 618 (1120)
|++||+.+.+ ....+..|...|.++.+.+. ++|+|++++|++++.||.|++||+.+++ .+..+
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGG---------------LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESG---------------GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccc---------------cccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence 9999999887 77778888888888765432 1345666789999999999999999887 67777
Q ss_pred ecCCC--CCCcCeEE----EcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhh
Q 001224 619 DADGG--LPASPRIR----FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 692 (1120)
Q Consensus 619 ~~~~~--~~~v~~~~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1120)
..+.. ...+.+++ |+|+++++++++.||.|++||+.++.. ...
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~------------------------------ 205 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWE------------------------------ 205 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-EEE------------------------------
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-eee------------------------------
Confidence 65433 23677787 788999999999999999999865510 000
Q ss_pred hccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceE
Q 001224 693 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 772 (1120)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 772 (1120)
..
T Consensus 206 -------------------------------------------------------------~~----------------- 207 (357)
T 3i2n_A 206 -------------------------------------------------------------TN----------------- 207 (357)
T ss_dssp -------------------------------------------------------------EE-----------------
T ss_pred -------------------------------------------------------------cC-----------------
Confidence 00
Q ss_pred EEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc---CCCEEEEEe-CCcEE
Q 001224 773 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKIS 848 (1120)
Q Consensus 773 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~---d~~~l~~~s-dg~i~ 848 (1120)
|...|.+++|+| ++.++++++ ||.|+
T Consensus 208 --------------------------------------------------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 208 --------------------------------------------------IKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp --------------------------------------------------CSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred --------------------------------------------------CCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 344556666666 666677666 67777
Q ss_pred EEEcCCCceeeeec-----CCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEEeecc-------------------eeeEe
Q 001224 849 LFNMMTFKTMATFM-----PPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSK 903 (1120)
Q Consensus 849 vwd~~~~~~~~~~~-----~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~-------------------~~~~~ 903 (1120)
+||+.+++....+. +|...|++++|+| +++ +|++|+.||.|++||+.++ +.+..
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN 316 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence 77776655544443 8999999999999 777 8999999999999999853 46778
Q ss_pred ecccccceEEEEEccCCCEEE-EEeCCCCEEEEECCCc
Q 001224 904 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGW 940 (1120)
Q Consensus 904 l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~v~iWd~~~~ 940 (1120)
+.+|...|++++|+|++++|+ +++.|+.|++||+.+.
T Consensus 317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 899999999999999999998 8999999999999874
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2e-33 Score=326.42 Aligned_cols=209 Identities=13% Similarity=0.127 Sum_probs=169.5
Q ss_pred ccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEE
Q 001224 422 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKV 499 (1120)
Q Consensus 422 l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~v 499 (1120)
..+|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.+.|++|+|+| ++. +|++|+.||+|++
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-~~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~~v~i 191 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-TFIKGIGAGGSITGLKFNPLNTN--QFYASSMEGTTRL 191 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-EEECCCSSSCCCCEEEECSSCTT--EEEEECSSSCEEE
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-eEEEccCCCCCEEEEEEeCCCCC--EEEEEeCCCEEEE
Confidence 456888999999999 6789999999999999999887643 3335679999999999998 566 7999999999999
Q ss_pred EECCCCceeEEeecc--ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224 500 WDATNGAKQYIFEGH--EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 577 (1120)
Q Consensus 500 wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 577 (1120)
||++++........| ...+.+++|+ +++.+|++|+.||.|++||++. +....+..|...|.+++|+|++.
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~----- 263 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVS--ASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD----- 263 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEE--TTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS-----
T ss_pred eeccCCceeEEeccCCCCccEEEEEEC--CCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc-----
Confidence 999876554444333 3446667765 4568999999999999999875 45566777878888888877765
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
.++++++.|+.|++||+++.+....+. ...+...|.+++|+|+|.+|++++.||.|++||+.++
T Consensus 264 ---------------~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 264 ---------------WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp ---------------SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred ---------------eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 468899999999999998876544332 2234557999999999999999999999999999876
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-32 Score=314.65 Aligned_cols=308 Identities=12% Similarity=0.162 Sum_probs=239.3
Q ss_pred EEECCCCceeEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccc
Q 001224 606 FWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 684 (1120)
Q Consensus 606 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1120)
+|++........+..| ...|.+++|+|++ ++|++|+.||.|++||+.++. ....+
T Consensus 57 ~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~--------------------- 112 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPF--DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-KTSFI--------------------- 112 (383)
T ss_dssp HHHHTTCEEEEEECCC--SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-CEEEE---------------------
T ss_pred cccccccceEEeccCC--CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-cceee---------------------
Confidence 3444555666666655 4479999999999 999999999999999987651 11100
Q ss_pred hhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEE
Q 001224 685 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 764 (1120)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 764 (1120)
. ..+|...|.+++
T Consensus 113 ---------------------------------------------------~----------------~~~h~~~v~~~~ 125 (383)
T 3ei3_B 113 ---------------------------------------------------Q----------------GMGPGDAITGMK 125 (383)
T ss_dssp ---------------------------------------------------C----------------CCSTTCBEEEEE
T ss_pred ---------------------------------------------------e----------------cCCcCCceeEEE
Confidence 0 013778999999
Q ss_pred EcC-CCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe
Q 001224 765 FTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 843 (1120)
Q Consensus 765 ~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s 843 (1120)
|+| ++..+++++.|+.|++||+.... .........+...|.+++|+|+++++++++
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 999 78999999999999999974211 111111122568899999999999999999
Q ss_pred -CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEEeec----ceeeEeecccccceEEEEEc
Q 001224 844 -GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFS 917 (1120)
Q Consensus 844 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~----~~~~~~l~~h~~~V~~l~~s 917 (1120)
|+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+.+ +.++..+ +|...|++++|+
T Consensus 183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp TTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence 899999999 5778889999999999999999 777 999999999999999998 5666666 699999999999
Q ss_pred c-CCCEEEEEeCCCCEEEEECCCcccccceeeecc--CCCCC-------CCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001224 918 H-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--TGRTP-------TAQSDTRVQFHQDQIHFLVVHETQLAIFETT 987 (1120)
Q Consensus 918 ~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~--~~~~~-------~~~~i~~~~fspdg~~la~~~d~~v~i~d~~ 987 (1120)
| ++++|++++.|+.|++||+.+++.......... ..+.. ....+..++|+|+|++ ..+.|+.|++||+.
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN 338 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence 9 999999999999999999998765432221110 01111 0012334556666665 22478999999999
Q ss_pred CceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224 988 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 988 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
+++++..+....|...+..++|+||+++|++|+ ||.|+|||+++
T Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999998887655788899999999999999997 99999999875
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.4e-32 Score=308.10 Aligned_cols=244 Identities=12% Similarity=0.094 Sum_probs=205.3
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc--eeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 440 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 440 (1120)
|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999999 59999999999999999886 443 36789999999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce---e-EEeecccc
Q 001224 441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---Q-YIFEGHEA 516 (1120)
Q Consensus 441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~---~-~~~~~h~~ 516 (1120)
|++++.||.|++||+.+++.. ....+.+|...|.+++|+|+++ ++++++.|+.|++||+..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeee-eeEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 999999999999999988744 2334578999999999999999 799999999999999998773 2 33367899
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCCC------------------CCceeeeCCCCceeEEEEcCCCCeEEecc
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL------------------GSRVDYEAPGRWCTTMAYSADGTRTYQGF 578 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 578 (1120)
.|.+++|++ ++.+|++++.||.|++||+... .....+..+.
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 202 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC------------------- 202 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS-------------------
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC-------------------
Confidence 999999865 4579999999999999997532 2222222333
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 579 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 579 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
..+..++|+|++++|++++.||.|++||+.+++.+..+..+. ..+.+++|+|++.+++++ .|+.|++|++.+
T Consensus 203 --~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 203 --GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp --SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred --CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 355666666666789999999999999999999999998664 379999999999988888 899999999987
No 76
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.4e-32 Score=306.16 Aligned_cols=322 Identities=14% Similarity=0.191 Sum_probs=238.5
Q ss_pred cccCCCCceEEEEEcCCCCeEE-EEEC---CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC---CCceEEEEecC
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFG-VAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGD 493 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~la-s~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~s~ 493 (1120)
++.+|...|.+++|+|++..++ +|+. |+.|+|||+.+++.... ...+|...|.+++|+|+ +. ++++|+.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 5678999999999999996555 5555 99999999999875432 23379999999999999 57 6999999
Q ss_pred CCcEEEEECCCCc-eeEEeeccccCeEEEeecc----CCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCC----cee
Q 001224 494 DKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGR----WCT 563 (1120)
Q Consensus 494 d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~ 563 (1120)
|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+.... ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999988 8899999999999997643 5677899999999999999999876 4444443322 333
Q ss_pred EEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC---CCCEEE
Q 001224 564 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---DGCLLA 640 (1120)
Q Consensus 564 ~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~ 640 (1120)
++++. ++++|+++++++++.||.|++||+++++...... + ...+.+++|+| ++.+++
T Consensus 169 ~~~~~-----------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 169 TVAFG-----------------NAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-I--KNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp EEEEE-----------------CCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-C--SSCEEEEEESCSSSSCCEEE
T ss_pred EEEEE-----------------eccCCCCCEEEEEccCCeEEEEECccCceeeecC-C--CCceEEEEcCCCCCCCCEEE
Confidence 33321 1156777899999999999999999998765544 3 33699999999 999999
Q ss_pred EEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCC
Q 001224 641 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV 720 (1120)
Q Consensus 641 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1120)
+++.||.|++||+.++ .....+..
T Consensus 229 ~~~~dg~i~i~d~~~~-~~~~~~~~------------------------------------------------------- 252 (357)
T 3i2n_A 229 ATSLEGKFHVFDMRTQ-HPTKGFAS------------------------------------------------------- 252 (357)
T ss_dssp EEESTTEEEEEEEEEE-ETTTEEEE-------------------------------------------------------
T ss_pred EECCCCeEEEEeCcCC-Ccccceee-------------------------------------------------------
Confidence 9999999999998765 22111100
Q ss_pred cceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCcccc
Q 001224 721 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATA 799 (1120)
Q Consensus 721 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 799 (1120)
... .+|...|.+++|+|++. .+++++.||.|++|++...
T Consensus 253 --------------~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------- 292 (357)
T 3i2n_A 253 --------------VSE----------------KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP---------- 292 (357)
T ss_dssp --------------EEE----------------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC----------
T ss_pred --------------ecc----------------CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC----------
Confidence 000 13677888899999888 7888888899998887321
Q ss_pred ccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc
Q 001224 800 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879 (1120)
Q Consensus 800 ~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 879 (1120)
... ..+.+++..... .+ +.+.+..+.+|...|++++|+| +++
T Consensus 293 ------------~~~---------------~~~~~~g~~~~~--~~--------~~~~~~~~~~~~~~v~~~~~s~-~~~ 334 (357)
T 3i2n_A 293 ------------IQR---------------SKKDSEGIEMGV--AG--------SVSLLQNVTLSTQPISSLDWSP-DKR 334 (357)
T ss_dssp ------------SCC-----------------CCTTSCCCCC--CC--------EEEEEEEEECCSSCEEEEEECS-SST
T ss_pred ------------ccc---------------ccccCCCCcccc--cc--------ccceeeccccCCCCeeEEEEcC-CCC
Confidence 000 011112211100 11 2245667788999999999999 788
Q ss_pred EEE-EEeCCCcEEEEEeeccee
Q 001224 880 IIA-IGMDDSSIQIYNVRVDEV 900 (1120)
Q Consensus 880 ~la-sg~~dg~v~vwd~~~~~~ 900 (1120)
+|+ +|+.||.|++||+.+.+.
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TEEEEEETTSEEEEEEECC---
T ss_pred eEEEEecCCCcEEEEECCCccc
Confidence 887 899999999999987653
No 77
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.8e-32 Score=308.52 Aligned_cols=264 Identities=17% Similarity=0.260 Sum_probs=209.9
Q ss_pred cCCCCceEEEEecC---CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC-
Q 001224 362 NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 437 (1120)
Q Consensus 362 ~h~~~v~~v~~spd---g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd- 437 (1120)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+....- .....|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS--------------YVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE--------------EECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee--------------ccccCCCCcEEEEEeccCC
Confidence 59999999999995 555677777788999999998876643110 012347889999999999
Q ss_pred ---CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCceeEEe--
Q 001224 438 ---GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 511 (1120)
Q Consensus 438 ---g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-- 511 (1120)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999988665 6789999999999999 777 7999999999999999999999988
Q ss_pred -eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCC-------------eEEec
Q 001224 512 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQG 577 (1120)
Q Consensus 512 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-------------~~~~~ 577 (1120)
.+|...|.+++|++ ++.+|++++.||.|++||+++......+.. .+.++|++. .....
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCcccccc
Confidence 68999999999965 557999999999999999987544332221 011111111 01111
Q ss_pred ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce--------------eEEEecCCCCCCcCeEEEcCC--CCEEEE
Q 001224 578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLAV 641 (1120)
Q Consensus 578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~ 641 (1120)
.+...+.+++|+ ++++++++.||.|++||+.++.. +..+..+. ..|.+++|+|+ +++|++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEE
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEE
Confidence 134467777777 56899999999999999987754 56666554 47999999999 999999
Q ss_pred EECCCcEEEEEccCc
Q 001224 642 STNDNGIKILATSDG 656 (1120)
Q Consensus 642 ~~~dg~i~iwd~~~~ 656 (1120)
++.||.|++||+.++
T Consensus 305 ~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 305 GNQVGKLYVWDLEVE 319 (366)
T ss_dssp ECTTSCEEEEECCSS
T ss_pred EecCCcEEEEECCCC
Confidence 999999999999876
No 78
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-34 Score=319.95 Aligned_cols=326 Identities=12% Similarity=0.112 Sum_probs=243.3
Q ss_pred cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC
Q 001224 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 549 (1120)
Q Consensus 470 h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 549 (1120)
-...|.+++|+|||+ ++||++.|++|+ |...++++ .+|...|.+++|+|++ .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~~--- 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFELA--- 74 (588)
T ss_dssp CSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSCC---
T ss_pred hhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEeC---
Confidence 457899999999999 799999999999 76666554 7999999999997643 3555555543
Q ss_pred CCceeee-CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC---CC
Q 001224 550 GSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---LP 625 (1120)
Q Consensus 550 ~~~~~~~-~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~ 625 (1120)
+....+. .+...|.+++|+|+| ..|++++.||.|++||..+ ++..+. +.. ..
T Consensus 75 ~~~~~~~~~~~~~V~~vawSPdG---------------------~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~ 130 (588)
T 2j04_A 75 QQNGLLNSQPVCYPRVCKPSPID---------------------DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSR 130 (588)
T ss_dssp CSSCSSTTSCSCCEEEEEECSSS---------------------SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTT
T ss_pred CCceEeecCCCCcEEEEEECCCC---------------------CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccc
Confidence 3222222 224455555555555 5899999999999999644 555555 332 12
Q ss_pred CcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001224 626 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 705 (1120)
Q Consensus 626 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1120)
.+.+++|||||++|++|+.||+|++||+.++ ..... .|
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~-~l~~~-----------------~~------------------------ 168 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKN-SENTP-----------------EF------------------------ 168 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCC-TTTCC-----------------CC------------------------
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCC-ccccc-----------------cc------------------------
Confidence 5899999999999999999999999998765 10000 00
Q ss_pred ccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEee
Q 001224 706 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 785 (1120)
Q Consensus 706 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 785 (1120)
+. + ..+.
T Consensus 169 --------------------------i~--------------------------------------l---------~ti~ 175 (588)
T 2j04_A 169 --------------------------YF--------------------------------------E---------SSIR 175 (588)
T ss_dssp --------------------------EE--------------------------------------E---------EEEE
T ss_pred --------------------------ee--------------------------------------e---------eeee
Confidence 00 0 0000
Q ss_pred ecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCce---eeee-
Q 001224 786 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF- 861 (1120)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~---~~~~- 861 (1120)
....+|...|.+++|+||| .++++.|++|++||+.++.. .+++
T Consensus 176 --------------------------------~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 176 --------------------------------LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp --------------------------------CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred --------------------------------cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeec
Confidence 0001277889999999999 44444499999999987763 3456
Q ss_pred cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEE--ccCCCEEEEEeCCCCEEEEECCC
Q 001224 862 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 862 ~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
.+|...|.+++|+ +.+||+++ ++.|++||+.+++......+|.+.|..++| +||+..|++++.||+ ++|..+.
T Consensus 223 ~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~ 297 (588)
T 2j04_A 223 NASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE 297 (588)
T ss_dssp CCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS
T ss_pred ccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc
Confidence 4788899999999 37888887 699999999988874444489999999999 999999999999999 9998762
Q ss_pred cccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEE
Q 001224 940 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1019 (1120)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1019 (1120)
++|+||+..++.. |+++++|+...+. +..+ .+...|++++|||||+.+|++
T Consensus 298 ------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPdG~~lA~~ 348 (588)
T 2j04_A 298 ------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPDGYSIAIV 348 (588)
T ss_dssp ------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTTSSEEEEE
T ss_pred ------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCCCCEEEEE
Confidence 4589999888775 9999999986554 3332 236679999999999999988
Q ss_pred E
Q 001224 1020 F 1020 (1120)
Q Consensus 1020 ~ 1020 (1120)
+
T Consensus 349 ~ 349 (588)
T 2j04_A 349 Y 349 (588)
T ss_dssp E
T ss_pred E
Confidence 6
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.7e-32 Score=309.45 Aligned_cols=321 Identities=13% Similarity=0.153 Sum_probs=239.6
Q ss_pred ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224 422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 501 (1120)
Q Consensus 422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd 501 (1120)
+..|.++|.+++|+|++++||+|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 45589999999999999999999999999999999886 223336889999999999999999 799999999999999
Q ss_pred CCCCceeEE--eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce---ee-eCCCCceeEEEEcCCCCeEE
Q 001224 502 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---DY-EAPGRWCTTMAYSADGTRTY 575 (1120)
Q Consensus 502 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~-~~~~~~v~~~~~s~~g~~~~ 575 (1120)
+.+++.... +..|...|.+++|++ ++.+|++++.|+.|++||++...... .+ ..|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~--------------- 143 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS--------------- 143 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS---------------
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC---------------
Confidence 998876544 467999999999865 45799999999999999998765321 11 22233
Q ss_pred ecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC------------------CCCceeEEEecCCCCCCcCeEEEcCCCC
Q 001224 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGC 637 (1120)
Q Consensus 576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 637 (1120)
.+.+++|+|++++|++++.||.|++||+ .+++.+..+..+ ...+.+++|+|+++
T Consensus 144 ------~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 144 ------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGS 215 (372)
T ss_dssp ------CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSS
T ss_pred ------CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCC
Confidence 4555666666678999999999999995 367777777655 34799999999999
Q ss_pred EEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCccccc
Q 001224 638 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 717 (1120)
Q Consensus 638 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1120)
+|++++.|+.|++||+.++ +.+..+
T Consensus 216 ~l~~~~~d~~i~i~d~~~~-~~~~~~------------------------------------------------------ 240 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKK-MAVATL------------------------------------------------------ 240 (372)
T ss_dssp EEEEEETTTEEEEEEGGGT-TEEEEE------------------------------------------------------
T ss_pred EEEEEeCCCEEEEEECCCC-ceeEEE------------------------------------------------------
Confidence 9999999999999998765 221111
Q ss_pred CCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecc--cccCCCC
Q 001224 718 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR--TERNSSG 795 (1120)
Q Consensus 718 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~--~~~~~~~ 795 (1120)
..|...|.+++|+|++..++++ .|+.+++|++.. +....
T Consensus 241 ------------------------------------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~-- 281 (372)
T 1k8k_C 241 ------------------------------------ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF-- 281 (372)
T ss_dssp ------------------------------------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE--
T ss_pred ------------------------------------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE--
Confidence 1155678999999999977766 899999999853 11100
Q ss_pred ccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEE---EcCCCcee------eee-cCCC
Q 001224 796 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKTM------ATF-MPPP 865 (1120)
Q Consensus 796 ~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vw---d~~~~~~~------~~~-~~~~ 865 (1120)
.. .+.. +.. -..+....+++| +... ... ..+ .+|.
T Consensus 282 ------------------~~-~~~~--~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~ 326 (372)
T 1k8k_C 282 ------------------GG-RLDV--PKQ-------------SSQRGLTARERFQNLDKKA-SSEGSAAAGAGLDSLHK 326 (372)
T ss_dssp ------------------CC-CCCC--C---------------------CHHHHHHHCCCCC----------CCCSSSSS
T ss_pred ------------------ee-ccCc--ccc-------------chhhhcchhhhhhhccccc-ccccCcccccccccccc
Confidence 00 0000 000 011112345555 4322 221 233 4899
Q ss_pred CCeEEEEEecCCC---cEEEEEeCCCcEEEEEeecce
Q 001224 866 PAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVDE 899 (1120)
Q Consensus 866 ~~i~~l~~sp~d~---~~lasg~~dg~v~vwd~~~~~ 899 (1120)
..|++++|++.++ .+|++|+.||.|++|++.+++
T Consensus 327 ~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 327 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred CCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 9999999886477 999999999999999998764
No 80
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.5e-32 Score=311.14 Aligned_cols=252 Identities=11% Similarity=0.090 Sum_probs=208.4
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc------eeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE------RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 433 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 433 (1120)
+.+|.+.|++++|+| + +|++|+.||+|+|||+.+++ .+. .+.+|...|.+++
T Consensus 12 ~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~ 69 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSY-------------------SHFVHKSGLHHVD 69 (397)
T ss_dssp SSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEE-------------------EEECCTTCEEEEE
T ss_pred hhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcce-------------------EEecCCCcEEEEE
Confidence 335999999999999 4 69999999999999999877 232 3668999999999
Q ss_pred EcCC----C---CeEEEEECCCeEEEEEccCCce-----eeeeeeeccc-----ccCeEEEEEc----CCCCceE-EEEe
Q 001224 434 WSPD----G---SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VITC 491 (1120)
Q Consensus 434 ~spd----g---~~las~~~dg~v~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~v~~s----~d~~~~~-l~s~ 491 (1120)
|+|+ | ++|++++.||.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |+++
T Consensus 70 ~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~ 144 (397)
T 1sq9_A 70 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVAT 144 (397)
T ss_dssp EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEE
T ss_pred EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEE
Confidence 9999 9 9999999999999999998875 43 57778 5899999999 9999 7 9999
Q ss_pred cCCCcEEEEECCC------CceeE-----Eee-------ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce
Q 001224 492 GDDKTIKVWDATN------GAKQY-----IFE-------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553 (1120)
Q Consensus 492 s~d~~i~vwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 553 (1120)
+.|+.|++||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.||.|++||+++.....
T Consensus 145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~ 221 (397)
T 1sq9_A 145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLY 221 (397)
T ss_dssp ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEE
T ss_pred eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeE
Confidence 9999999999998 77776 774 4889999999865 55 99999999999999999876666
Q ss_pred eeeC---C---CCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCC--
Q 001224 554 DYEA---P---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG-- 622 (1120)
Q Consensus 554 ~~~~---~---~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-- 622 (1120)
.+.. | ...+.+++|+ |++++|++++.| |.|++||+.+++.+..+....
T Consensus 222 ~~~~~~~h~~~~~~i~~i~~~---------------------~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~ 280 (397)
T 1sq9_A 222 NFESQHSMINNSNSIRSVKFS---------------------PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 280 (397)
T ss_dssp EEECCC---CCCCCEEEEEEC---------------------SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred EEeccccccccCCccceEEEC---------------------CCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence 6665 5 5555555554 455689999999 999999999999999887610
Q ss_pred ---------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhc
Q 001224 623 ---------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663 (1120)
Q Consensus 623 ---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 663 (1120)
+...|.+++|+|++++|++++.||.|++||+.++ +.+..+
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~ 329 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTL 329 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEE
Confidence 2447999999999999999999999999999877 444333
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-33 Score=318.13 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=195.5
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC--ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 440 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 440 (1120)
+.+.|++++|+|+|+ +|++|+.||.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 667999999999999 5999999999999999987 3332 47789999999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc---eeEEeec-ccc
Q 001224 441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA 516 (1120)
Q Consensus 441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~---~~~~~~~-h~~ 516 (1120)
|++|+.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873334446788999999999999999 69999999999999999887 4778887 999
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC--CC--ceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~--~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~ 592 (1120)
.|.+++|++ ++.+|++++.|+.|++||+............ .. ....+. ..+ .+...+.+++|+|++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG 217 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence 999999965 5579999999999999998643321110000 00 000000 011 233467777888888
Q ss_pred CEEEEEeCCCeEEEEECCCCce----eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 654 (1120)
++|++++.||.|++||+.+++. +..+..+. ..|.+++|+|++++|++++.++.+ +|+..
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8999999999999999999987 66666554 479999999999999998766665 66654
No 82
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-31 Score=294.64 Aligned_cols=244 Identities=17% Similarity=0.230 Sum_probs=203.6
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
..+.+|.+.|++++| |++++ |++|+.||.|+|||+.+++... .+..|...|.+++|+|+
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~ 70 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCYDSE 70 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEEETT
T ss_pred HHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEECCC
Confidence 334569999999999 99994 9999999999999998887665 35678999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 517 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~ 517 (1120)
+++|++|+.||.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|...
T Consensus 71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~ 144 (313)
T 3odt_A 71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNAS 144 (313)
T ss_dssp TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECCSSC
T ss_pred CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccCCCc
Confidence 999999999999999999876544445578899999999999 456 799999999999999 78888899999999
Q ss_pred eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC-CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
|.++++.+. ++.++++++.||.|++||.. .....+.. +...+.++ +++|++. ++
T Consensus 145 v~~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~---------------------~~~~~~~-~~ 199 (313)
T 3odt_A 145 VWDAKVVSF-SENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHL---------------------AVVDDGH-FI 199 (313)
T ss_dssp EEEEEEEET-TTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEE---------------------EEEETTE-EE
T ss_pred eeEEEEccC-CCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEE---------------------EEcCCCe-EE
Confidence 999998762 44799999999999999932 33333333 44444444 4555544 99
Q ss_pred EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+++.||.|++||+.+++.+..+..+. ..+.+++|+|++ .+++++.||.|++||+.++
T Consensus 200 ~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 200 SCSNDGLIKLVDMHTGDVLRTYEGHE--SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EccCCCeEEEEECCchhhhhhhhcCC--ceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 99999999999999999999998664 479999999999 5889999999999998776
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=317.04 Aligned_cols=319 Identities=8% Similarity=-0.014 Sum_probs=234.6
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
-...|.+|+|||||+ ++|+++.|++|+ |...++ .+.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC----
Confidence 358899999999999 599999999999 754443 246899999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc-----C
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P 517 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-----~ 517 (1120)
.++.+.+|+.+....+ .+ +|...|.+++|||||+ .|++++.||.|++||.+. ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 4565555554432211 22 5688999999999999 699999999999999544 777777 765 4
Q ss_pred eEEEeeccCCCceEEEEEecCCeEEEEecCCCCC-------ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224 518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590 (1120)
Q Consensus 518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~ 590 (1120)
|.+++|+ ++|++|++|+.||+|++||+..+.. ..++..+. .| +...+..++|+|
T Consensus 132 v~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~----------------~g-h~~~V~sVawSP 192 (588)
T 2j04_A 132 YHCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD----------------AG-SKDWVTHIVWYE 192 (588)
T ss_dssp EEEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC----------------TT-CCCCEEEEEEET
T ss_pred EEEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc----------------cc-ccccEEEEEEcC
Confidence 9999985 4668999999999999999987542 12221110 11 123555666666
Q ss_pred CCCEEEEEeCCCeEEEEECCCCce---eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccc
Q 001224 591 TKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 667 (1120)
Q Consensus 591 ~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 667 (1120)
+| +++++.|++|++||+.++.. ..++.. .+...|.+++|+ |+.|++++ +++|++||+.++......
T Consensus 193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~----- 261 (588)
T 2j04_A 193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK----- 261 (588)
T ss_dssp TE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-----
T ss_pred Cc--EEEEeCCCeEEEEECCCCccccceeeecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-----
Confidence 66 88899999999999988774 345531 233479999999 68898887 699999998766211100
Q ss_pred ccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccce
Q 001224 668 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 747 (1120)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 747 (1120)
T Consensus 262 -------------------------------------------------------------------------------- 261 (588)
T 2j04_A 262 -------------------------------------------------------------------------------- 261 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCccccccEEEEEE--cCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCC
Q 001224 748 SLRLPENLRATKISRLIF--TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 825 (1120)
Q Consensus 748 ~~~~~~~~~~~~i~~l~~--s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 825 (1120)
.+|...+..++| +|++..++++..+|. ++|..+
T Consensus 262 ------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d-------------------------------------- 296 (588)
T 2j04_A 262 ------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED-------------------------------------- 296 (588)
T ss_dssp ------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS--------------------------------------
T ss_pred ------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec--------------------------------------
Confidence 126677888899 999988899998999 888751
Q ss_pred CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe
Q 001224 826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 885 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 885 (1120)
.++++||+..+++. |+++++|+..... ...+.+ ...|.+++||| ||+++|+++
T Consensus 297 ---~~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp ---SEEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred ---cEEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence 25577887776665 7778888765433 334443 55578888888 787887765
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-31 Score=304.61 Aligned_cols=293 Identities=16% Similarity=0.211 Sum_probs=238.9
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
.+...-+|...+.+..+++++.. +++++.||.|+|||+.+++.... ....|...|.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s 143 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWS 143 (401)
T ss_dssp EEEECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEEC
T ss_pred eeeeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEEC
Confidence 34444456665544444444454 67788999999999999887653 123488999999999
Q ss_pred CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC-CCceeEEeecc
Q 001224 436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGH 514 (1120)
Q Consensus 436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~h 514 (1120)
|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++||+. .+..+..+.+|
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred CCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 999999999999999999999988665 678999999999994 45 79999999999999999 56778899999
Q ss_pred ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224 515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 594 (1120)
Q Consensus 515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~ 594 (1120)
.+.|.+++|++ ++.+|++++.||.|++||+.+......+..+...+.+++|+|++. ..
T Consensus 217 ~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--------------------~l 274 (401)
T 4aez_A 217 SSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS--------------------NL 274 (401)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------TE
T ss_pred CCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------CE
Confidence 99999999976 557999999999999999998887777777888888888887765 45
Q ss_pred EEEEe--CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE--CCCcEEEEEccCcchhhhhcccccccc
Q 001224 595 FLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDA 670 (1120)
Q Consensus 595 l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~ 670 (1120)
+++++ .|+.|++||+.+++.+..+..+ ..+.+++|+|+++++++++ .||.|++|++.++. ...
T Consensus 275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~--------- 341 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTK--------- 341 (401)
T ss_dssp EEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEE---------
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-cee---------
Confidence 66665 7999999999999999888743 3599999999999999954 89999999987651 110
Q ss_pred cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeec
Q 001224 671 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 750 (1120)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 750 (1120)
++.+
T Consensus 342 ---------------------------------------------------------------~~~~------------- 345 (401)
T 4aez_A 342 ---------------------------------------------------------------QVDI------------- 345 (401)
T ss_dssp ---------------------------------------------------------------EEEE-------------
T ss_pred ---------------------------------------------------------------EEEe-------------
Confidence 0010
Q ss_pred cCCccccccEEEEEEcCCCceEEEeccCceEEEeeecc
Q 001224 751 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 788 (1120)
Q Consensus 751 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 788 (1120)
.+|...|.+++|+|++..+++++.||.|++|++..
T Consensus 346 ---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 346 ---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp ---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred ---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 12677889999999999999999999999998743
No 85
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.3e-32 Score=308.43 Aligned_cols=290 Identities=12% Similarity=0.169 Sum_probs=207.8
Q ss_pred cCeEEEEEcCCCCceEEEEecCCC-------cEEEEECCCCce----------eEEeeccccCeEEEeeccCCCceEEEE
Q 001224 472 GGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAK----------QYIFEGHEAPVYSVCPHHKENIQFIFS 534 (1120)
Q Consensus 472 ~~V~~v~~s~d~~~~~l~s~s~d~-------~i~vwd~~~~~~----------~~~~~~h~~~v~~~~~~~~~~~~~l~s 534 (1120)
-+|++++|+||++ +|++||.|. .|++|++..+.. ...+.+|...|.++++. . ..+++
T Consensus 15 ~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~--~~~~~ 88 (365)
T 4h5i_A 15 YPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--K--GIILV 88 (365)
T ss_dssp SCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--T--TEEEE
T ss_pred CCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--C--CEEEE
Confidence 4899999999999 789987654 499999876532 12456788888888753 2 35665
Q ss_pred Ee-----------cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe--CC
Q 001224 535 TA-----------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DD 601 (1120)
Q Consensus 535 ~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d 601 (1120)
|. .|+.+++|++.......... ....+.. ....+..+.+++|+|||+++++++ .|
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~~~v~fSpDg~~la~as~~~d 156 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFL------TSVDFDA------STNADDYTKLVYISREGTVAAIASSKVP 156 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEE------EEECSSC------CCCTTCCEEEEEECTTSSCEEEEESCSS
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEe------eeeceee------cCCcccCEEEEEEcCCCCEEEEEECCCC
Confidence 53 46788888876644332211 1111100 001122456677777777876554 78
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCc
Q 001224 602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 681 (1120)
Q Consensus 602 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1120)
++|++||+.+++++..+..+ ..|.+++|+|||+++++++.+ .+++|+..++.......
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~------------------ 214 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT------------------ 214 (365)
T ss_dssp CEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC------------------
T ss_pred CEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee------------------
Confidence 99999999999999888733 359999999999999998854 56667655441100000
Q ss_pred ccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEE
Q 001224 682 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 761 (1120)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~ 761 (1120)
...
T Consensus 215 -----------------------------------------------------------------------~~~------ 217 (365)
T 4h5i_A 215 -----------------------------------------------------------------------DFD------ 217 (365)
T ss_dssp -----------------------------------------------------------------------CCC------
T ss_pred -----------------------------------------------------------------------cCC------
Confidence 001
Q ss_pred EEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEE
Q 001224 762 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 841 (1120)
Q Consensus 762 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~ 841 (1120)
|...|.+++|+|+++++++
T Consensus 218 -------------------------------------------------------------~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 218 -------------------------------------------------------------KNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp -------------------------------------------------------------TTEEEEEEEEEETTEEEEE
T ss_pred -------------------------------------------------------------CCCCEEEEEEcCCCCEEEE
Confidence 3444555556666666665
Q ss_pred Ee-CC----cEEEEEcCCCce----eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee-cccccce
Q 001224 842 AS-GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRI 911 (1120)
Q Consensus 842 ~s-dg----~i~vwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V 911 (1120)
++ |+ .+++|++..... ...+.+|...|++++|+| |+++||+|+.|++|+|||+.+++++..+ .+|...|
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI 315 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence 55 43 366666654432 345678899999999999 9999999999999999999999998875 7999999
Q ss_pred EEEEEccCCCEEEEEeCCCCEEEEECCCc
Q 001224 912 TGLAFSHALNVLVSSGADSQLCVWSSDGW 940 (1120)
Q Consensus 912 ~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~ 940 (1120)
++|+|||||++||||+.|++|+||++...
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999999754
No 86
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.7e-32 Score=305.16 Aligned_cols=203 Identities=14% Similarity=0.109 Sum_probs=169.2
Q ss_pred CCCCccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224 823 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 899 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 899 (1120)
+...+.+++|||||+++++++ |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++. +.+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCc
Confidence 556788999999999987654 7999999999999988886 777899999999 9999999885 467777777766
Q ss_pred eeE--eecccccceEEEEEccCCCEEEEEeCCC----CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEE
Q 001224 900 VKS--KLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 973 (1120)
Q Consensus 900 ~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~l 973 (1120)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++........ ......+|. ..|++++|+|||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSKQVTNRF---KGITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEEEEESSC---SCEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-eeeeecCCC---CCeEeEEECCCCCce
Confidence 543 4567999999999999999999999887 588898876543221 122334444 379999999999999
Q ss_pred EEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCc
Q 001224 974 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus 974 a~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
|++ .|+.|+|||+.+++++..+. .+|...|++++|||||++||+|+.|++|+|||+...
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 995 88999999999999987753 389999999999999999999999999999999644
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-31 Score=291.16 Aligned_cols=285 Identities=14% Similarity=0.188 Sum_probs=238.6
Q ss_pred eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEE
Q 001224 463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 542 (1120)
Q Consensus 463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 542 (1120)
....+.+|.+.|++++| ++++ +|++++.||.|++||+.+++....+..|...|.+++|++ ++.+|++++.||.|+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~--~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDS--KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS--EKELLLFGGKDTMIN 84 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETT--EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET--TTTEEEEEETTSCEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCC--EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC--CCCEEEEecCCCeEE
Confidence 34478999999999999 8988 799999999999999999999999999999999999975 457999999999999
Q ss_pred EEecCCC---CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 001224 543 AWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 619 (1120)
Q Consensus 543 iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 619 (1120)
+|++... .....+..|...+.++.+ +++.+++++.||.|++|| .++.+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------------------~~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF-----------------------QDGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE-----------------------ETTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe-----------------------cCCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 9998764 334455555555555555 235799999999999999 667777777
Q ss_pred cCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001224 620 ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 698 (1120)
Q Consensus 620 ~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1120)
.+. ..+.+++|+| ++.++++++.||.|++||.... ...+
T Consensus 140 ~~~--~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~----------------------------------- 179 (313)
T 3odt_A 140 AHN--ASVWDAKVVSFSENKFLTASADKTIKLWQNDKV---IKTF----------------------------------- 179 (313)
T ss_dssp CCS--SCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---EEEE-----------------------------------
T ss_pred cCC--CceeEEEEccCCCCEEEEEECCCCEEEEecCce---EEEE-----------------------------------
Confidence 654 4789999988 9999999999999999983211 0000
Q ss_pred cccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC
Q 001224 699 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 778 (1120)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 778 (1120)
T Consensus 180 -------------------------------------------------------------------------------- 179 (313)
T 3odt_A 180 -------------------------------------------------------------------------------- 179 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce
Q 001224 779 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 857 (1120)
Q Consensus 779 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~ 857 (1120)
. ..|...+.+++|+|++. +++++ ||.|++||+.+++.
T Consensus 180 ------~-----------------------------------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 180 ------S-----------------------------------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp ------C-----------------------------------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred ------e-----------------------------------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence 0 01556678888888888 66666 89999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224 858 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 937 (1120)
Q Consensus 858 ~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~ 937 (1120)
+..+.+|...|++++|+| ++ .|++|+.||.|++||+.+++.+..+..|...|++++|+|+++ +++++.||.|++||+
T Consensus 218 ~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred hhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 999999999999999999 77 588999999999999999999999999999999999999998 667999999999999
Q ss_pred CCccc
Q 001224 938 DGWEK 942 (1120)
Q Consensus 938 ~~~~~ 942 (1120)
.+++.
T Consensus 295 ~~~~~ 299 (313)
T 3odt_A 295 EKSRW 299 (313)
T ss_dssp CGGGC
T ss_pred CCCce
Confidence 98654
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-30 Score=302.05 Aligned_cols=239 Identities=17% Similarity=0.233 Sum_probs=199.0
Q ss_pred CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE
Q 001224 366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 445 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 445 (1120)
-++.|+||+++ +||+|. |++|+|||+.+|+.+... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 35789999865 688876 899999999999876531 1457889999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeeccccCeEEEeec
Q 001224 446 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVCPH 524 (1120)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~ 524 (1120)
.||+|+|||+++++.+. .+.+|...|.+++|+ +. ++++|+.|+.+++||.... ..+.++.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999998766 688999999999885 45 7999999999999998864 5567889999999999985
Q ss_pred cCCCceEEEEEecCCeEEEEecCCCCC----ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE--E
Q 001224 525 HKENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA--A 598 (1120)
Q Consensus 525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~--~ 598 (1120)
+ ++.++++++.|+.+++|+....+. ......+...|..++|+|++. ..+++ |
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~--------------------~~la~~~g 297 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS--------------------NVLATGGG 297 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT--------------------TEEEEEEC
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc--------------------cEEEEEee
Confidence 4 557999999999999999987543 334556667777777777665 34554 4
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE--CCCcEEEEEccCc
Q 001224 599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDG 656 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~ 656 (1120)
+.|+.|++||+.++++...+..+. .+.++.|+++++.+++++ .|+.|++||+.++
T Consensus 298 s~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 298 TSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp TTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 579999999999999999887654 488999999999998876 6899999998765
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-32 Score=311.11 Aligned_cols=340 Identities=10% Similarity=0.052 Sum_probs=219.4
Q ss_pred cCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEEC
Q 001224 423 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 502 (1120)
Q Consensus 423 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~ 502 (1120)
..|.++|++++|+|+|++||+|+.|+.|+|||+.++. ......+.+|.+.|.+++|+|+++ +|++++.|+.|++||+
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC--
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEEc
Confidence 3467799999999999999999999999999999873 112336889999999999999998 6999999999999999
Q ss_pred CCCc---eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC---ceeeeC-CCCceeEEEEcCCCCeEE
Q 001224 503 TNGA---KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEA-PGRWCTTMAYSADGTRTY 575 (1120)
Q Consensus 503 ~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~v~~~~~s~~g~~~~ 575 (1120)
.++. ....+.+|...|.+++|++ ++.+|++++.|+.|++||++..+. ...+.. |...|.+++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~-------- 154 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW-------- 154 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEE--------
T ss_pred CCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEE--------
Confidence 9887 6778889999999999865 557999999999999999987653 344444 5555555555
Q ss_pred ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CceeEEEecCCCCCCcCeEEEcCCCC
Q 001224 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------------------VQLLTSIDADGGLPASPRIRFNKDGC 637 (1120)
Q Consensus 576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~ 637 (1120)
+|++++|++++.||.|++||+.+ ++++..+ .+...|.+++|+|+++
T Consensus 155 -------------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~ 218 (377)
T 3dwl_C 155 -------------HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGN 218 (377)
T ss_dssp -------------CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSS
T ss_pred -------------cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCC
Confidence 45555899999999999999853 3444444 3445799999999999
Q ss_pred EEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCccccc
Q 001224 638 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 717 (1120)
Q Consensus 638 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1120)
+|++++.||.|++||+.++......+
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~~~~~~------------------------------------------------------ 244 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQPPRAL------------------------------------------------------ 244 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTSCEEEC------------------------------------------------------
T ss_pred EEEEEeCCCcEEEEECCCCCCcceee------------------------------------------------------
Confidence 99999999999999998762110000
Q ss_pred CCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcc
Q 001224 718 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 797 (1120)
Q Consensus 718 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 797 (1120)
..+ .+|...|.+++|+|+++++++++.++.+ +|+..........
T Consensus 245 -----------------------------~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-- 288 (377)
T 3dwl_C 245 -----------------------------ITV----KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTR-- 288 (377)
T ss_dssp -----------------------------CCE----ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSB--
T ss_pred -----------------------------Eee----cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEe--
Confidence 000 2366789999999999988888766666 6655321110000
Q ss_pred ccccCceeecCCCCCccc-ccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEec
Q 001224 798 TASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP 875 (1120)
Q Consensus 798 ~~~~~~~~w~~~~g~~~~-~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 875 (1120)
.++........ .............++.|++....+.... .|... ........|...|+++++.+
T Consensus 289 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~H~~~i~~~~~~~ 354 (377)
T 3dwl_C 289 -------DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPTVHQNMIATLRPYA 354 (377)
T ss_dssp -------CCCSCCCCCCBSSSSSBCCCCCC--------------------------------CCCSSSCSSCEEEEEEEE
T ss_pred -------eecccccccccccccccccccccccccccccccccccchhhccccc-------cccccCccccceeEEEeccC
Confidence 00000000000 0000000112244444444433332221 12211 12223456999999999877
Q ss_pred CCCc---EEEEEeCCCcEEEEEe
Q 001224 876 QDNN---IIAIGMDDSSIQIYNV 895 (1120)
Q Consensus 876 ~d~~---~lasg~~dg~v~vwd~ 895 (1120)
.++. .|++|+.||.|++||+
T Consensus 355 ~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 355 GTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EETTEEEEEEEEETTSEEEEECC
T ss_pred CCCCceEEEEeecCCCcEEEecC
Confidence 3444 7999999999999985
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.7e-30 Score=300.36 Aligned_cols=298 Identities=15% Similarity=0.214 Sum_probs=225.0
Q ss_pred ceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce
Q 001224 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 507 (1120)
Q Consensus 428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~ 507 (1120)
.++.|+||++ ++||+|. |++|+|||..+|+... ...+.+|...|++|+|+|+|+ +|++|+.||.|+|||+.++++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 5678999986 4777775 9999999999998664 335678889999999999999 799999999999999999999
Q ss_pred eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCc-eeeeCCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224 508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 586 (1120)
Q Consensus 508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~ 586 (1120)
+..+.+|...+.+++++ +.+|++|+.|+.+++||....... ..+..|...+..+.+
T Consensus 182 ~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~------------------- 238 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW------------------- 238 (420)
T ss_dssp EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE-------------------
T ss_pred EEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeee-------------------
Confidence 99999999999988863 358999999999999998865433 344555555555554
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCce----eEEEecCCCCCCcCeEEEcCCC-CEEEEE--ECCCcEEEEEccCcchh
Q 001224 587 QFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIRL 659 (1120)
Q Consensus 587 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~--~~dg~i~iwd~~~~~~~ 659 (1120)
+|++.++++++.|+.+++|+..+++. +.....+ ...|.+++|+|++ .+++++ +.|++|++||+.++. .
T Consensus 239 --~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-~ 313 (420)
T 4gga_A 239 --APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-C 313 (420)
T ss_dssp --CTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-E
T ss_pred --cCCCCeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-c
Confidence 44555899999999999999987653 3444433 4478999999954 455554 468999999876651 1
Q ss_pred hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224 660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 739 (1120)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 739 (1120)
...+
T Consensus 314 ~~~~---------------------------------------------------------------------------- 317 (420)
T 4gga_A 314 LSAV---------------------------------------------------------------------------- 317 (420)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred ceee----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224 740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 819 (1120)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 819 (1120)
T Consensus 318 -------------------------------------------------------------------------------- 317 (420)
T 4gga_A 318 -------------------------------------------------------------------------------- 317 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 820 DSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 820 ~~~~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
.+...+.++.|+++++.+++++ |+.|+|||+.+++++.++.+|...|++++|+| |+++||+|+.||+|+|||+.
T Consensus 318 --~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 318 --DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF 394 (420)
T ss_dssp --ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred --ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 0233466777888888877653 78999999999999999999999999999999 99999999999999999998
Q ss_pred cceeeEeecccccceEEEEEc
Q 001224 897 VDEVKSKLKGHSKRITGLAFS 917 (1120)
Q Consensus 897 ~~~~~~~l~~h~~~V~~l~~s 917 (1120)
..........+...+....|.
T Consensus 395 ~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 395 ELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp CSSCC----------------
T ss_pred CCCccchhhhccCCccccccC
Confidence 766666655555554444443
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.4e-30 Score=286.09 Aligned_cols=282 Identities=18% Similarity=0.262 Sum_probs=216.2
Q ss_pred eEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee
Q 001224 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 508 (1120)
Q Consensus 429 V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~ 508 (1120)
.++|+||+++ +||+| .|++|+|||+++++.++ ...+.+|...|++++|+|+++ ++++|+.|++|++||+.+++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~-~~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEE-EEEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5789999986 77766 49999999999998764 335668889999999999999 7999999999999999999999
Q ss_pred EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224 509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 588 (1120)
Q Consensus 509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~ 588 (1120)
..+.+|...+.++.+. +..+++++.++.+++|+.....
T Consensus 103 ~~~~~h~~~~~~~~~~----~~~l~s~~~~~~~~~~~~~~~~-------------------------------------- 140 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAE-------------------------------------- 140 (318)
T ss_dssp EEEECCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSS--------------------------------------
T ss_pred EEecCccceEEEeecC----CCEEEEEecCCceEeeecCCCc--------------------------------------
Confidence 9999999888766542 2467777777777666554311
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccc
Q 001224 589 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 668 (1120)
Q Consensus 589 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 668 (1120)
..+..+..| ...+..+.++++++++++++.|+.|++||+.++........
T Consensus 141 ------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---- 190 (318)
T 4ggc_A 141 ------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---- 190 (318)
T ss_dssp ------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE----
T ss_pred ------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee----
Confidence 122333333 33678899999999999999999999999876621100000
Q ss_pred cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcccee
Q 001224 669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 748 (1120)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 748 (1120)
.
T Consensus 191 -------------------------------------------------------------------------------~ 191 (318)
T 4ggc_A 191 -------------------------------------------------------------------------------T 191 (318)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------e
Confidence 0
Q ss_pred eccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc
Q 001224 749 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 828 (1120)
Q Consensus 749 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 828 (1120)
. .. +...|.
T Consensus 192 ~----~~-------------------------------------------------------------------~~~~v~ 200 (318)
T 4ggc_A 192 F----TQ-------------------------------------------------------------------HQGAVK 200 (318)
T ss_dssp E----CC-------------------------------------------------------------------CCSCEE
T ss_pred e----cc-------------------------------------------------------------------cCCceE
Confidence 0 00 334445
Q ss_pred EEEEccCCCEE---EEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEEeecceeeE
Q 001224 829 CFALSKNDSYV---MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKS 902 (1120)
Q Consensus 829 ~l~~s~d~~~l---~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~~ 902 (1120)
+++++|++..+ ++++ +++|++||........... +...+..+.|+| ++..+++++ .||.|++||+.+++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~ 278 (318)
T 4ggc_A 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVA 278 (318)
T ss_dssp EEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred EEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEE
Confidence 55555544432 2334 6889999988877665554 667799999999 666666544 79999999999999999
Q ss_pred eecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224 903 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 903 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
.+.+|.+.|++|+|+|||++|+||+.||+|+|||+..
T Consensus 279 ~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 279 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999999999999999999999999999999875
No 92
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9e-31 Score=286.80 Aligned_cols=253 Identities=12% Similarity=0.101 Sum_probs=205.4
Q ss_pred CCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC--CceeeeecCCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEEeec
Q 001224 822 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 822 ~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~sp~-d~~~lasg~~dg~v~vwd~~~ 897 (1120)
+|...|.+++|+|+|++|++|+ |++|++||+.. .+.+.++.+|...|.+++|+++ ++++||+|+.||+|++||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 3999999999999999999999 99999999974 4677899999999999999862 488999999999999999988
Q ss_pred ce--eeEeecccccceEEEEEccC--CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC----
Q 001224 898 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---- 969 (1120)
Q Consensus 898 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd---- 969 (1120)
++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||+.++..... ....+|. ..|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~---~~~~~h~---~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP---IIIDAHA---IGVNSASWAPATIEE 160 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC---EEEECCS---SCEEEEEECCCC---
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee---eeeeccc---CccceEeecCCcccc
Confidence 74 56778899999999999998 89999999999999999987532211 2233444 37899999997
Q ss_pred ---------CcEEEE-EeCCeEEEEEcCCce----eeeccccCCCCCCeeEEEECCCC---cEEEEEEcCCcEEEEEcCC
Q 001224 970 ---------QIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 970 ---------g~~la~-~~d~~v~i~d~~~~~----~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
+++|++ +.|+.|++||+.+++ ....+ .+|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 568888 589999999998765 33444 4899999999999995 8999999999999999987
Q ss_pred cce--eeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 001224 1033 LKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1091 (1120)
Q Consensus 1033 ~~~--~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~ 1091 (1120)
+.. ...+. ...+| ...+. +++|+| ++++|++++.||.|++|+.... +.|.
T Consensus 239 ~~~~~~~~~~----~~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~~-g~w~ 290 (297)
T 2pm7_B 239 EQGPWKKTLL----KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE-GKWE 290 (297)
T ss_dssp TTSCCEEEES----SSSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECTT-SCEE
T ss_pred CCCccceeee----ecccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECCC-CcEE
Confidence 532 11111 01122 22355 899999 6899999999999999998642 3444
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.9e-31 Score=300.43 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=221.8
Q ss_pred cCCCCc--eEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 423 KDPGVS--VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 423 ~~h~~~--V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.+|... +.+++|+ +..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 88 ~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 88 PGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 355555 4445555 467888999999999999998865421 223889999999999999 79999999999999
Q ss_pred ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224 501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 579 (1120)
Q Consensus 501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 579 (1120)
|+.+++.+..+.+|...|.+++|. +.++++++.||.|++||++. ......+..|...|.+++|+|++
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-------- 229 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-------- 229 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS--------
T ss_pred ECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC--------
Confidence 999999999999999999999983 35899999999999999984 34445555566555555555554
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC-EEEEEE--CCCcEEEEEccCc
Q 001224 580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST--NDNGIKILATSDG 656 (1120)
Q Consensus 580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~ 656 (1120)
++|++++.||.|++||+.+++.+..+..+. ..|.+++|+|++. ++++++ .|+.|++||+.++
T Consensus 230 -------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 230 -------------LQLASGGNDNVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp -------------SEEEEEETTSCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred -------------CEEEEEeCCCeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 589999999999999999999988887554 4799999999764 555554 6999999998655
Q ss_pred chhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeee
Q 001224 657 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 736 (1120)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 736 (1120)
.....+
T Consensus 295 -~~~~~~------------------------------------------------------------------------- 300 (401)
T 4aez_A 295 -ARVNTV------------------------------------------------------------------------- 300 (401)
T ss_dssp -CEEEEE-------------------------------------------------------------------------
T ss_pred -CEEEEE-------------------------------------------------------------------------
Confidence 110000
Q ss_pred cccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccc
Q 001224 737 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 816 (1120)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 816 (1120)
T Consensus 301 -------------------------------------------------------------------------------- 300 (401)
T 4aez_A 301 -------------------------------------------------------------------------------- 300 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCccEEEEccCCCEEEE--Ee-CCcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001224 817 DVTDSNPEEAVPCFALSKNDSYVMS--AS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 891 (1120)
Q Consensus 817 ~~~~~~~~~~v~~l~~s~d~~~l~~--~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~ 891 (1120)
.+...+.+++|+|+++++++ |+ ||.|++||+.+++.. ..+.+|...|.+++|+| ++++|++|+.||.|+
T Consensus 301 -----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 301 -----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLK 374 (401)
T ss_dssp -----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEE
T ss_pred -----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 02344667777777777777 33 678888888775443 34678999999999999 999999999999999
Q ss_pred EEEeecceeeEee
Q 001224 892 IYNVRVDEVKSKL 904 (1120)
Q Consensus 892 vwd~~~~~~~~~l 904 (1120)
+|++.+++.+...
T Consensus 375 iw~~~~~~~~~~~ 387 (401)
T 4aez_A 375 FWRVYDGDHVKRP 387 (401)
T ss_dssp EEECCC-------
T ss_pred EEECCCCcccccc
Confidence 9999998876554
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=1.3e-31 Score=296.31 Aligned_cols=253 Identities=16% Similarity=0.201 Sum_probs=201.6
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--CCC
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 439 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~ 439 (1120)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++.... ..+.+|.+.|.+++|+| +++
T Consensus 11 ~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ---CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGSS
T ss_pred cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCCC
Confidence 5999999999999999 599999999999999988753211 03778999999999986 489
Q ss_pred eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEEEEECCCCce---eEEeecc
Q 001224 440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAK---QYIFEGH 514 (1120)
Q Consensus 440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h 514 (1120)
+||+|+.|++|+|||++++... ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+..+.. ...+.+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 9999999999999999987422 23367899999999999998 55 799999999999999987632 3456789
Q ss_pred ccCeEEEeeccCC---------------CceEEEEEecCCeEEEEecCCCC---CceeeeCCCCceeEEEEcCCCCeEEe
Q 001224 515 EAPVYSVCPHHKE---------------NIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 515 ~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
...|.+++|++.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++.
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~---- 225 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG---- 225 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS----
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC----
Confidence 9999999987652 14689999999999999997542 3445666777777777777651
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 652 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 652 (1120)
.++.+|++++.||+|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|++|++|+
T Consensus 226 -------------~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 226 -------------LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp -------------CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred -------------CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 012579999999999999997631 12233333 34799999999999999999999999999
Q ss_pred cc
Q 001224 653 TS 654 (1120)
Q Consensus 653 ~~ 654 (1120)
..
T Consensus 291 ~~ 292 (316)
T 3bg1_A 291 ES 292 (316)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 95
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.2e-30 Score=302.92 Aligned_cols=273 Identities=12% Similarity=0.201 Sum_probs=201.7
Q ss_pred ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCC------------Cc
Q 001224 361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG------------VS 428 (1120)
Q Consensus 361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~ 428 (1120)
+.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ........+.+|. +.
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCc
Confidence 45789999999999999 599999999999999998763110000 0000111467888 88
Q ss_pred eEEEEEcCCC--CeEEEEECCCeEEEEEccCCceee------------------------------------eeee-ecc
Q 001224 429 VNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QHLE-IDA 469 (1120)
Q Consensus 429 V~~l~~spdg--~~las~~~dg~v~iwd~~~~~~~~------------------------------------~~~~-l~~ 469 (1120)
|.+++|+|++ .+|++++.|++|++||+.++.... .... +.+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 899999999999999998754311 0012 368
Q ss_pred cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-CceeE-------EeeccccCeEEEeeccCCCceEEEEEecCCeE
Q 001224 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQY-------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 541 (1120)
Q Consensus 470 h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i 541 (1120)
|...|.+++|+|+++ +|++| .|+.|++||+.+ +..+. .+.+|...|.+++|+++.. .+|++|+.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence 999999999999999 78888 799999999984 44444 2568999999999975431 699999999999
Q ss_pred EEEecCCCCC----ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeE
Q 001224 542 KAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLT 616 (1120)
Q Consensus 542 ~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~ 616 (1120)
++||+++... ...+..+..... ...+ ......+..++|+|++.+|++++. +.|++||+.+ ++.+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSN--------RSFF-SEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-------------CCHH-HHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred EEEECcCCccccceeeEeccCCCccc--------cccc-cccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 9999998765 444544443000 0000 001124556666666678999998 9999999997 88888
Q ss_pred EEecCCCCCC-------------cCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 617 SIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 617 ~~~~~~~~~~-------------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
.+..+..... +..++|+|++++|++|+.||.|++||+.++
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 8876643111 234999999999999999999999999887
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=4.9e-31 Score=291.65 Aligned_cols=225 Identities=19% Similarity=0.300 Sum_probs=175.1
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK 498 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~ 498 (1120)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57799999999999999999999999999999999987532 23468899999999999864 66 699999999999
Q ss_pred EEECCCCc--eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC---ceeeeCCCCceeEEEEcCCCCe
Q 001224 499 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR 573 (1120)
Q Consensus 499 vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~ 573 (1120)
+||++++. .+..+.+|...|.+++|+++.++.+|++|+.|++|++||+..... ...+..|...+.+++|+|++..
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567888999999999998876678999999999999999987532 2344567778888899887530
Q ss_pred E-EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeEEEecCCCCCCcCeEEEcCCC----CEEEEEECC
Q 001224 574 T-YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND 645 (1120)
Q Consensus 574 ~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d 645 (1120)
- +..+..+ ....++.+|++++.|+.|++||+..+ +.+..+..| ...|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence 0 0000000 01122468999999999999999755 345555544 4579999999986 899999999
Q ss_pred CcEEEEEccC
Q 001224 646 NGIKILATSD 655 (1120)
Q Consensus 646 g~i~iwd~~~ 655 (1120)
++|++|++.+
T Consensus 238 ~~v~iw~~~~ 247 (316)
T 3bg1_A 238 GRVFIWTCDD 247 (316)
T ss_dssp CEEEEEECSS
T ss_pred CeEEEEEccC
Confidence 9999999865
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=5.3e-30 Score=288.52 Aligned_cols=226 Identities=12% Similarity=0.130 Sum_probs=180.6
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCcee-eeeeeecccccCeEEEEEcC--CCCceEEEEecCCCcE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTI 497 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~s~d~~i 497 (1120)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| +++ +|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 57899999999999999999999999999999999976422 33446789999999999999 577 79999999999
Q ss_pred EEEECCCC---------ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEc
Q 001224 498 KVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 568 (1120)
Q Consensus 498 ~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 568 (1120)
++||+.++ +.+..+.+|...|.+++|++..++.+|++++.||.|++||+.+......+... ..+..+.+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-ccccccccc
Confidence 99999987 56788899999999999977633679999999999999999987665443211 011111111
Q ss_pred CCCCeEEecccccceeEEEEcCC---CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC----CEEEE
Q 001224 569 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAV 641 (1120)
Q Consensus 569 ~~g~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~ 641 (1120)
+. .....+.+++|+|+ +..+++++.++.+.+|+...++.........+...|.+++|+|++ ++|++
T Consensus 163 ~~-------~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 163 PA-------NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp CS-------SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred cC-------CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 11 12335667777776 789999999999999988887763333333445689999999998 89999
Q ss_pred EECCCcEEEEEccCc
Q 001224 642 STNDNGIKILATSDG 656 (1120)
Q Consensus 642 ~~~dg~i~iwd~~~~ 656 (1120)
++.||.|++||+.++
T Consensus 236 ~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 236 GCKDGRIRIFKITEK 250 (351)
T ss_dssp EETTSCEEEEEEEEC
T ss_pred EcCCCeEEEEeCCCC
Confidence 999999999998765
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=9.1e-30 Score=285.90 Aligned_cols=294 Identities=13% Similarity=0.100 Sum_probs=230.0
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
+..+|.+.|++++|+|++++|++++.|+.|+||++.++........+.+|...|.+++|+|+++. ++++|+.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 35689999999999999999999999999999999988722223346689999999999999882 38999999999999
Q ss_pred EC-CCCceeEEeec--cccCeEEEeeccCCCceEEEEEecCCeEEEEecCC---------CCCceeeeCCCCceeEEEEc
Q 001224 501 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS 568 (1120)
Q Consensus 501 d~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s 568 (1120)
|+ .+++. ..+.+ |...|.+++|++ +.++++++.|+.|++||+++ ......+. +...
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~------- 152 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK------- 152 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC-------
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc-------
Confidence 99 77755 77888 999999999976 47999999999999999886 44443333 3333
Q ss_pred CCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCC
Q 001224 569 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN 646 (1120)
Q Consensus 569 ~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 646 (1120)
+.+++++|++ +++++.|+.|++||+.+ +..........+...+.+++|+| +++++++++.||
T Consensus 153 --------------v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 153 --------------IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp --------------EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred --------------eEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 4445555554 89999999999999998 65432222223345799999999 999999999999
Q ss_pred cEEEEEccCcc-----hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCc
Q 001224 647 GIKILATSDGI-----RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 721 (1120)
Q Consensus 647 ~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1120)
.|++|++.... .....+..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 240 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRC-------------------------------------------------------- 240 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEEC--------------------------------------------------------
T ss_pred cEEEEEEcCCCcccccccceeeec--------------------------------------------------------
Confidence 99999986540 00000000
Q ss_pred ceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcccccc
Q 001224 722 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 801 (1120)
Q Consensus 722 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 801 (1120)
|...
T Consensus 241 ----------------------------------~~~~------------------------------------------ 244 (342)
T 1yfq_A 241 ----------------------------------HRLN------------------------------------------ 244 (342)
T ss_dssp ----------------------------------CCCC------------------------------------------
T ss_pred ----------------------------------cccc------------------------------------------
Confidence 0000
Q ss_pred CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCC-CCCeEEEEEecCCCc
Q 001224 802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN 879 (1120)
Q Consensus 802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~ 879 (1120)
..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++ | +++
T Consensus 245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~ 305 (342)
T 1yfq_A 245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN 305 (342)
T ss_dssp ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence 00012677899999999999999998 899999999999999999998 99999999 8 899
Q ss_pred EEEEEeCCCc-EEEEE
Q 001224 880 IIAIGMDDSS-IQIYN 894 (1120)
Q Consensus 880 ~lasg~~dg~-v~vwd 894 (1120)
+|++|+.||. .+.|.
T Consensus 306 ~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 306 ILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEEECTHHHHCSS
T ss_pred eEEEEecCCccccccc
Confidence 9999999998 44433
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=9.8e-30 Score=288.82 Aligned_cols=300 Identities=16% Similarity=0.153 Sum_probs=234.3
Q ss_pred cccCCCCceEEEEEcCC---CCeEEEEECCCeEEEEEccC-CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224 421 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 496 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spd---g~~las~~~dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~ 496 (1120)
++.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+. ..+.+|.+.|.+++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 47899999999999999 69999999999999999997 44331 35778999999999999999 7999999999
Q ss_pred EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224 497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
|++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-------- 179 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI-------- 179 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--------
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--------
Confidence 9999999998776 5569999999999777788899999999999999999877766665543 22222222
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCE----EEEEECCCcEEEEE
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL----LAVSTNDNGIKILA 652 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~iwd 652 (1120)
...+++++.++.+++|++...................++++.++... +++++.||.|++|+
T Consensus 180 ---------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 180 ---------------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp ---------------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred ---------------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 23688899999999999988765544433333335666777665554 99999999999999
Q ss_pred ccCcch--hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224 653 TSDGIR--LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 730 (1120)
Q Consensus 653 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 730 (1120)
+..... ....+.+|..
T Consensus 245 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 262 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRS-------------------------------------------------------------- 262 (368)
T ss_dssp SSCSCHHHHSEEEECSEE--------------------------------------------------------------
T ss_pred cCCCCccccceeeeeeec--------------------------------------------------------------
Confidence 876521 0111110000
Q ss_pred cceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCC
Q 001224 731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 810 (1120)
Q Consensus 731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 810 (1120)
.. . .
T Consensus 263 ----------------------------~~---------~--~------------------------------------- 266 (368)
T 3mmy_A 263 ----------------------------NG---------T--N------------------------------------- 266 (368)
T ss_dssp ----------------------------C---------------------------------------------------
T ss_pred ----------------------------cc---------c--c-------------------------------------
Confidence 00 0 0
Q ss_pred CCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001224 811 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 889 (1120)
Q Consensus 811 g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~ 889 (1120)
.....|...|.+++|+|++++|++++ ||.|++||+.+++.+..+..|...|++++|+| ++++||+|+.|+.
T Consensus 267 -------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 267 -------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW 338 (368)
T ss_dssp --------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred -------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence 00011556789999999999999998 99999999999999999999999999999999 9999999999886
Q ss_pred EEEEEe
Q 001224 890 IQIYNV 895 (1120)
Q Consensus 890 v~vwd~ 895 (1120)
.+.|++
T Consensus 339 ~~~~~~ 344 (368)
T 3mmy_A 339 SKGHEF 344 (368)
T ss_dssp TTCGGG
T ss_pred cccccc
Confidence 555544
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=6.2e-29 Score=275.87 Aligned_cols=282 Identities=17% Similarity=0.282 Sum_probs=229.2
Q ss_pred EEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEE
Q 001224 760 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 839 (1120)
Q Consensus 760 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l 839 (1120)
...++||+++ +++++.|+.|+|||+ .+|+.+.. +...+|...|.+++|+|+++++
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~----------------------~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSA----------------------SSGDILQL-LQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEET----------------------TTCCEEEE-EECCSTTCCEEEEEECTTSSEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEEC----------------------CCCCEEEE-EEecCCCCeEEEEEECCCCCEE
Confidence 4568999886 445566999999876 34433221 2223488899999999999999
Q ss_pred EEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeEeecccccceEEEEEc
Q 001224 840 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFS 917 (1120)
Q Consensus 840 ~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s 917 (1120)
++|+ ||+|++||+.+++.+..+.+|...+.++.+. +.++++|+.++.+++|+.... ..+..+.+|...+..+.++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 9999 9999999999999999999999888876654 579999999999999998765 5567789999999999999
Q ss_pred cCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE---E-eCCeEEEEEcCCceeee
Q 001224 918 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV---V-HETQLAIFETTKLECVK 993 (1120)
Q Consensus 918 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~---~-~d~~v~i~d~~~~~~~~ 993 (1120)
+++++|++++.|++|++||+.+++........ ...+. ..|..++++|++..++. + .++.|++||........
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~ 235 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceee-ecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence 99999999999999999999987654332222 22222 47899999998664442 2 57899999999888766
Q ss_pred ccccCCCCCCeeEEEECCCCcEEEEEE--cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224 994 QWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus 994 ~~~~~~h~~~v~~l~~s~dg~~l~s~~--~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
.. .|...+..+.|+|++..+++++ .|+.|+|||+.+++.+..+. +|.+. |. +++|+| |+++|++
T Consensus 236 ~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~-V~--~l~~sp-dg~~l~S 301 (318)
T 4ggc_A 236 AV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSR-VL--SLTMSP-DGATVAS 301 (318)
T ss_dssp EE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSC-EE--EEEECT-TSSCEEE
T ss_pred cc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEE
Confidence 54 4577899999999999888765 79999999999999999887 55443 66 899999 6899999
Q ss_pred EeCCCcEEEEecCCCC
Q 001224 1072 GLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1072 ~~~Dg~v~vW~~~~~~ 1087 (1120)
|+.||+|+|||+.+.+
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999997754
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.3e-29 Score=292.56 Aligned_cols=233 Identities=20% Similarity=0.337 Sum_probs=203.6
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 441 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 441 (1120)
+|...|+|++| +++ ++++|+.||+|+|||+.+++.+. .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 47788998887 777 59999999999999999988776 37789999999999 88999
Q ss_pred EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee---EEeeccccCe
Q 001224 442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV 518 (1120)
Q Consensus 442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~h~~~v 518 (1120)
++|+.||.|++||+.+++.+. .+.+|...|.+++|++ . ++++|+.|+.|++||+.++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999998665 6789999999999974 3 6999999999999999988766 6788999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~ 598 (1120)
.++++ ++.++++|+.||.|++||+.+......+..|...+.++.+. ++++++|
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~g 312 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG 312 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-----------------------CCEEEEE
Confidence 99997 34699999999999999999988887777777767666652 2479999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+.||.|++||+.+++.+..+..|. ..|.+++| ++.+|++|+.||.|++||+.++
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred eCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 999999999999999999998664 47888888 7899999999999999998655
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=7.4e-30 Score=286.66 Aligned_cols=245 Identities=9% Similarity=0.011 Sum_probs=202.8
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC-e
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L 440 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~ 440 (1120)
+|.+.|++++|+|+++ +|++|+.||.|+|||+.+++..... ..+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCCcE
Confidence 5899999999999999 5899999999999999887621100 02447999999999999999 9
Q ss_pred EEEEECCCeEEEEEc-cCCceeeeeeeecc--cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC---------Ccee
Q 001224 441 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ 508 (1120)
Q Consensus 441 las~~~dg~v~iwd~-~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~---------~~~~ 508 (1120)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+.+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 88764 25778 999999999999 77 799999999999999988 7777
Q ss_pred EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCce--eeeCCCCceeEEEEcCCCCeEEecccccceeE
Q 001224 509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 585 (1120)
Q Consensus 509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~--~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~ 585 (1120)
..+. |...|.+++|++ + .+++++.|+.|++||++. ..... ....+.. .+.+
T Consensus 145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------------------~i~~ 198 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY---------------------QIRD 198 (342)
T ss_dssp SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSS---------------------CEEE
T ss_pred eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCC---------------------ceeE
Confidence 7777 889999999864 3 299999999999999987 44321 2222333 4455
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCC------ceeEEEecCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001224 586 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL 651 (1120)
Q Consensus 586 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw 651 (1120)
++|+| +++++++++.||.|++|+++.. +....+..+.. ...|.+++|+|++++|++++.||.|++|
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 55666 6668999999999999999887 77788876643 3379999999999999999999999999
Q ss_pred EccCc
Q 001224 652 ATSDG 656 (1120)
Q Consensus 652 d~~~~ 656 (1120)
|+.++
T Consensus 279 d~~~~ 283 (342)
T 1yfq_A 279 NLQTR 283 (342)
T ss_dssp ETTTT
T ss_pred cCccH
Confidence 98776
No 103
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=286.35 Aligned_cols=254 Identities=17% Similarity=0.196 Sum_probs=199.4
Q ss_pred ceeeec-cCCCCceEEEEecC---CCeEEEEEeCCCcEEEEecCC-CceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224 356 TVTRTL-NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 430 (1120)
Q Consensus 356 ~~~~~~-~h~~~v~~v~~spd---g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 430 (1120)
.....+ +|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ ++.+.. .+.+|...|.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~v~ 90 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGPVL 90 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSCEE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCCEE
Confidence 334444 59999999999999 46 699999999999999998 444321 3667999999
Q ss_pred EEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEE--cCCCCceEEEEecCCCcEEEEECCCCcee
Q 001224 431 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGAKQ 508 (1120)
Q Consensus 431 ~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~--s~d~~~~~l~s~s~d~~i~vwd~~~~~~~ 508 (1120)
+++|+|++++|++++.||.|++||+.+++.+. +.+|...|.+++| ++++. ++++++.|+.|++||+++++.+
T Consensus 91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~ 164 (368)
T 3mmy_A 91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPM 164 (368)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCS
T ss_pred EEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEE
Confidence 99999999999999999999999999987554 5679999999999 88888 7999999999999999999999
Q ss_pred EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC--CCCceeEEEEcCCCCeEEecccccceeEE
Q 001224 509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVV 586 (1120)
Q Consensus 509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~~~~~~~~~~i~~~ 586 (1120)
..+..|. .+.++.+. . ..+++++.++.+++|+++.......... .......+.+.+++..
T Consensus 165 ~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 226 (368)
T 3mmy_A 165 MVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN------------- 226 (368)
T ss_dssp EEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-------------
T ss_pred EEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-------------
Confidence 9998765 56666653 2 3788889999999999987544332211 1122222322222210
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC---ceeEEEecCCCC----------CCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224 587 QFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 587 ~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 653 (1120)
....+++++.||.|++||+... ..+..+..+... ..|.+++|+|++++|++++.||.|++||+
T Consensus 227 ----~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 227 ----KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp ----CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred ----CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 0123999999999999999987 556666655321 15899999999999999999999999998
Q ss_pred cCc
Q 001224 654 SDG 656 (1120)
Q Consensus 654 ~~~ 656 (1120)
.++
T Consensus 303 ~~~ 305 (368)
T 3mmy_A 303 DAR 305 (368)
T ss_dssp TTT
T ss_pred CCC
Confidence 766
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.5e-29 Score=292.25 Aligned_cols=276 Identities=21% Similarity=0.317 Sum_probs=228.7
Q ss_pred ecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEec
Q 001224 467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 546 (1120)
Q Consensus 467 l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 546 (1120)
..+|...|.+++| +++ ++++|+.||.|++||+.+++.+..+.+|.+.|.+++| ++.+|++|+.||.|++||+
T Consensus 129 ~~~~~~~v~~~~~--d~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred ccCCCCcEEEEEE--CCC--EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence 4467788999987 677 7999999999999999999999999999999999987 4479999999999999999
Q ss_pred CCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---EEEecCCC
Q 001224 547 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGG 623 (1120)
Q Consensus 547 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~ 623 (1120)
.+++....+..|...|.++++++ +.+++++.||.|++||+.++... ..+..+
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~-----------------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-- 255 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN-----------------------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-- 255 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT-----------------------TEEEEEETTSCEEEEECSSSSCCEEEEEECCC--
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC-----------------------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC--
Confidence 99888777777777777776642 36999999999999999988765 444444
Q ss_pred CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001224 624 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 703 (1120)
Q Consensus 624 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1120)
...|.+++| +++++++|+.||.|++||+.++ +....+
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~~~~~---------------------------------------- 292 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTL---------------------------------------- 292 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEE----------------------------------------
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cEEEEE----------------------------------------
Confidence 447888888 7889999999999999998655 111000
Q ss_pred ccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEE
Q 001224 704 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 783 (1120)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v 783 (1120)
T Consensus 293 -------------------------------------------------------------------------------- 292 (435)
T 1p22_A 293 -------------------------------------------------------------------------------- 292 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec
Q 001224 784 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 862 (1120)
Q Consensus 784 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~ 862 (1120)
. +|...|.++++ +++++++|+ ||.|++||+.+++.+..+.
T Consensus 293 -----------------------------------~--~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 293 -----------------------------------N--GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp -----------------------------------E--CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred -----------------------------------c--CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence 0 15556677777 467888888 8999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce---------eeEeecccccceEEEEEccCCCEEEEEeCCCCEE
Q 001224 863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 933 (1120)
Q Consensus 863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~ 933 (1120)
+|...|.+++| ++.+|++|+.||.|++||+.+++ ++..+.+|.+.|++++| ++.+|++++.||+|+
T Consensus 334 ~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 334 GHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL 408 (435)
T ss_dssp CCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred CCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence 99999999998 46799999999999999998876 78899999999999999 788999999999999
Q ss_pred EEECCCccc
Q 001224 934 VWSSDGWEK 942 (1120)
Q Consensus 934 iWd~~~~~~ 942 (1120)
+||+.+...
T Consensus 409 iwd~~~~~~ 417 (435)
T 1p22_A 409 IWDFLNDPA 417 (435)
T ss_dssp EEC------
T ss_pred EEECCCCCC
Confidence 999988543
No 105
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.4e-29 Score=294.24 Aligned_cols=306 Identities=13% Similarity=0.138 Sum_probs=224.1
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC-cccccCCCCCCC----------
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPE---------- 824 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~-~~~~~~~~~~~~---------- 824 (1120)
+...|.+++|+|+|++|++++.||.|++|++......... ..+. .....+.+ |.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~--h~~~~~~~~~~~ 91 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-------------SRGEYNVYSTFQS--HEPEFDYLKSLE 91 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-------------CCCCEEEEEEEEC--CCCEEEGGGTEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-------------cccceeEeccccc--cccccccccccc
Confidence 6789999999999999999999999999998643211000 0000 01111222 65
Q ss_pred --CCccEEEEccCC--CEEEEEe-CCcEEEEEcCCCcee---------------------------------------ee
Q 001224 825 --EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM---------------------------------------AT 860 (1120)
Q Consensus 825 --~~v~~l~~s~d~--~~l~~~s-dg~i~vwd~~~~~~~---------------------------------------~~ 860 (1120)
..|.+++|+|++ .++++++ |++|++||+.++... ..
T Consensus 92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 889999999998 7888888 999999998764431 12
Q ss_pred -ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeE-------eecccccceEEEEEccCC-CEEEEEeCCC
Q 001224 861 -FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS-------KLKGHSKRITGLAFSHAL-NVLVSSGADS 930 (1120)
Q Consensus 861 -~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~-------~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg 930 (1120)
..+|...|.+++|+| ++++|++| .||.|++||+.+ ++.+. .+.+|...|++++|+|++ .+|++|+.||
T Consensus 172 ~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 172 FANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp ECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred eccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence 367999999999999 89999998 799999999984 44444 367899999999999998 9999999999
Q ss_pred CEEEEECCCcccccceeeeccCCCCCC---------CCCCcEEEEccCCcEEEEEeCCeEEEEEcCC-ceeeeccccCCC
Q 001224 931 QLCVWSSDGWEKQKNRFLQIPTGRTPT---------AQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES 1000 (1120)
Q Consensus 931 ~v~iWd~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~fspdg~~la~~~d~~v~i~d~~~-~~~~~~~~~~~h 1000 (1120)
+|++||+.+++.... ......++... ...|.+++|+|+|++|+++.++.|++||+.+ ++++..+. +|
T Consensus 250 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~--~~ 326 (447)
T 3dw8_B 250 TIRLCDMRASALCDR-HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ--VH 326 (447)
T ss_dssp CEEEEETTTCSSSCT-TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE--SC
T ss_pred eEEEEECcCCccccc-eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee--cc
Confidence 999999998653211 12222333210 0268999999999999997669999999997 77777765 44
Q ss_pred CCC---------------eeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCc------ccC------CC-----
Q 001224 1001 SAP---------------ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA------YLP------AG----- 1048 (1120)
Q Consensus 1001 ~~~---------------v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~------~~~------~g----- 1048 (1120)
... +..++|+|++++|++|+.||.|+|||+.+++.+....... ..+ .+
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 321 3359999999999999999999999999998764221100 000 00
Q ss_pred -----CCCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224 1049 -----VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus 1049 -----~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
.....-.++.++|+| ++++|++++.++ +++|.-
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECC-CCCEEEEEecce-eeeecc
Confidence 000011234899999 589999998776 777753
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-29 Score=287.01 Aligned_cols=256 Identities=16% Similarity=0.203 Sum_probs=208.3
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCC--CceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
+-+|.+.|++++|+|+++ +|++|+.||.|+|||+.. ++.+. .+.+|...|++++|+|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~ 66 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 66 (379)
T ss_dssp EEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCG
T ss_pred ecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCC
Confidence 445999999999999999 499999999999999984 33332 36789999999999987
Q ss_pred --CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEEEEECCCCc--eeEEe
Q 001224 438 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 511 (1120)
Q Consensus 438 --g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~ 511 (1120)
+++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ....+
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEe
Confidence 999999999999999999998622 33367789999999999999 78 79999999999999999873 44567
Q ss_pred eccccCeEEEeeccCC-----------CceEEEEEecCCeEEEEecCCCCCc----eeeeCCCCceeEEEEcCCCCeEEe
Q 001224 512 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 512 ~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
.+|...|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|++.
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---- 219 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 219 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC----
Confidence 7899999999997742 5689999999999999999876543 23444555555555555510
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 653 (1120)
.+++|++++.||.|++||+.++. ....+....+...+.+++|+|++++|++++.||.|++|++
T Consensus 220 --------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 220 --------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred --------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 04589999999999999998875 2333333335567999999999999999999999999998
Q ss_pred cCc
Q 001224 654 SDG 656 (1120)
Q Consensus 654 ~~~ 656 (1120)
..+
T Consensus 286 ~~~ 288 (379)
T 3jrp_A 286 NLE 288 (379)
T ss_dssp EET
T ss_pred CCC
Confidence 754
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=7.8e-30 Score=293.27 Aligned_cols=252 Identities=15% Similarity=0.228 Sum_probs=201.3
Q ss_pred CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCeEEEE
Q 001224 366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVA 444 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~ 444 (1120)
....++++|+...++++|+.||.|+||++....... .....+.+|.+.|.+++|+| ++++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 445689999988777788999999999996643321 01114778999999999999 99999999
Q ss_pred ECCCeEEEEEccCCcee----eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe--eccccCe
Q 001224 445 YSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPV 518 (1120)
Q Consensus 445 ~~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~--~~h~~~v 518 (1120)
+.||.|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987421 233468899999999999999844 7999999999999999999999999 8899999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 597 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~ 597 (1120)
.+++|++ ++.+|++++.||.|++||+++......+ ..|... .+..+.|+|++.+|++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~~ 237 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT--------------------RPVHAVFVSEGKILTT 237 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS--------------------SCCEEEECSTTEEEEE
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC--------------------cceEEEEcCCCcEEEE
Confidence 9999965 5579999999999999999886655554 333332 2444555555567888
Q ss_pred E---eCCCeEEEEECCCCce-eEEEecCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCc
Q 001224 598 A---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDG 656 (1120)
Q Consensus 598 ~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~ 656 (1120)
| +.|+.|++||+.+++. +..... .+...+.+++|+|++++|+++ +.||.|++|++.++
T Consensus 238 g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 238 GFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp EECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred eccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 8 7899999999998765 333332 233468999999999999754 47999999999876
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.9e-29 Score=282.46 Aligned_cols=260 Identities=10% Similarity=0.128 Sum_probs=208.5
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--C
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 437 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--d 437 (1120)
..+|.+.|++++|+|+++ +|++|+.||.|+|||+.++...... ...+.+|...|.+++|+| |
T Consensus 7 ~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp ECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCGGG
T ss_pred CcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCCCC
Confidence 446999999999999999 5999999999999999876432110 013678999999999999 6
Q ss_pred CCeEEEEECCCeEEEEEccCCce------eeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEEEEECCCCceeE
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDE------VRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAKQY 509 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~------~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~vwd~~~~~~~~ 509 (1120)
+++|++|+.||.|++||+.+++. ......+.+|.+.|.+++|+|+ +. ++++++.|+.|++||+.+++.+.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence 99999999999999999998632 1334468899999999999999 88 79999999999999999887654
Q ss_pred Eee-------------ccccCeEEEeeccC-CCceEEEEEecCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCe
Q 001224 510 IFE-------------GHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTR 573 (1120)
Q Consensus 510 ~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~ 573 (1120)
.+. +|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 433 68889999999775 1357999999999998887766543 3444556666666666665510
Q ss_pred EEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------------------------------
Q 001224 574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------------------------------- 612 (1120)
Q Consensus 574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------------- 612 (1120)
.+++|++++.||.|++||+.++
T Consensus 229 -----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 229 -----------------WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp -----------------SSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred -----------------cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 0047999999999999999865
Q ss_pred -----ceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 613 -----QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 613 -----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+.+..+..| ...|.+++|+|++++|++++.||.|++|++.++
T Consensus 292 ~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 292 SNLQVELLSEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp CSEEEEEEEEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccccccEEEEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 445555544 447999999999999999999999999999876
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=7.5e-29 Score=285.10 Aligned_cols=286 Identities=15% Similarity=0.128 Sum_probs=226.4
Q ss_pred EEEEcCCCceEEE-eccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-CCCEE
Q 001224 762 RLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYV 839 (1120)
Q Consensus 762 ~l~~s~~g~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-d~~~l 839 (1120)
.++++|+...+++ ++.+|.|++|++....... . ....+. +|...|.+++|+| ++++|
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~------------------~-~~~~~~--~h~~~V~~~~~~p~~~~~l 97 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVD------------------K-NVPLVC--GHTAPVLDIAWCPHNDNVI 97 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECC------------------T-TCCCBC--CCSSCEEEEEECTTCTTEE
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCC------------------C-CCceEe--cCCCCEEEEEeCCCCCCEE
Confidence 4778888766554 6778999999974321100 0 000122 3899999999999 99999
Q ss_pred EEEe-CCcEEEEEcCCC-------ceeeeecCCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEEeecceeeEee--cccc
Q 001224 840 MSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGHS 908 (1120)
Q Consensus 840 ~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l--~~h~ 908 (1120)
++|+ ||+|++||+.++ +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+ .+|.
T Consensus 98 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 176 (402)
T 2aq5_A 98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176 (402)
T ss_dssp EEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC
T ss_pred EEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC
Confidence 9999 999999999987 56788899999999999999 65 79999999999999999999999999 8999
Q ss_pred cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeecc-CCCCCCCCCCcEEEEccCCcEEEEE----eCCeEEE
Q 001224 909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-TGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAI 983 (1120)
Q Consensus 909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~fspdg~~la~~----~d~~v~i 983 (1120)
..|++++|+|++++|++++.|+.|++||+.+++. +... .+|.. ..+..++|+|++.+|+++ .|+.|++
T Consensus 177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV-----VAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVAL 249 (402)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----EEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEeCCCCce-----eeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence 9999999999999999999999999999998543 2222 34432 247999999999999997 6899999
Q ss_pred EEcCCceeeeccccCCCCCCeeEEEECCCCcEEEE-EEcCCcEEEEEcCCcce-eeeeCCCcccCCCCCCCCccceEEEe
Q 001224 984 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-CFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAA 1061 (1120)
Q Consensus 984 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-~~~Dg~v~iwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~i~~ 1061 (1120)
||+.+++.........|...|.+++|+||+++|++ |+.||.|++||+.+++. +..+.. .. +...+. +++|
T Consensus 250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~---~~---~~~~v~--~~~~ 321 (402)
T 2aq5_A 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM---FS---SKESQR--GMGY 321 (402)
T ss_dssp EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE---EC---CSSCCS--EEEE
T ss_pred EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc---cc---cCCccc--ceEE
Confidence 99998765222222356788999999999999975 45799999999999884 444331 11 122355 8999
Q ss_pred cCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1062 HPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1062 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
+| ++.++++ .|+.+++|++.+++
T Consensus 322 sp-~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 322 MP-KRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp CC-GGGSCGG--GTEEEEEEEEETTE
T ss_pred ec-cccccee--cceeEEEEEcCCCc
Confidence 99 5777664 57799999998865
No 110
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-28 Score=280.03 Aligned_cols=251 Identities=12% Similarity=0.071 Sum_probs=207.6
Q ss_pred CCCCccEEEEccCCCEEEEEe-CCcEEEEEcC--CCceeeeecCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEeec
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~~ 897 (1120)
|...|.+++|+|++++|++++ ||.|++||+. +++.+..+.+|...|++++|++ + +++|++|+.||.|++||+.+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEET
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCC
Confidence 999999999999999999998 9999999998 6677788999999999999997 5 89999999999999999999
Q ss_pred ce--eeEeecccccceEEEEEccC--CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc-----
Q 001224 898 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ----- 968 (1120)
Q Consensus 898 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp----- 968 (1120)
++ .+..+.+|...|++++|+|+ +.+|++++.|+.|++||+..+....... ..+|. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~---~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHA---IGVNSASWAPATIEE 162 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCT---TCEEEEEECCCC---
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCC---CceEEEEEcCccccc
Confidence 87 77888899999999999999 9999999999999999999864433222 23333 3789999999
Q ss_pred --------CCcEEEEE-eCCeEEEEEcCCceee--eccccCCCCCCeeEEEECCC---CcEEEEEEcCCcEEEEEcCCcc
Q 001224 969 --------DQIHFLVV-HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus 969 --------dg~~la~~-~d~~v~i~d~~~~~~~--~~~~~~~h~~~v~~l~~s~d---g~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
++.+++++ .|+.|++||+.++... ......+|...|.+++|+|+ +++|++++.||.|+|||+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 68999885 7999999999876432 11223478999999999999 8999999999999999999875
Q ss_pred eeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224 1035 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1035 ~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
........ ...+| ...+. +++|+| ++++|++++.||.|++|++..+
T Consensus 243 ~~~~~~~~--~~~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 243 GPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SCCEEEES--SSSCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEET
T ss_pred ccceeeee--ccccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCC
Confidence 22111100 01111 22244 899999 6899999999999999999854
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.6e-28 Score=284.54 Aligned_cols=267 Identities=13% Similarity=0.220 Sum_probs=214.1
Q ss_pred eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224 357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 436 (1120)
Q Consensus 357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 436 (1120)
....+.|.+.|++++|+|++..++|+|+.||.|+|||+.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 4567789999999999998655899999999999999976211000 0000001114678999999999999
Q ss_pred CCC-eEEEEECCCeEEEEEccCCce----eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC---cee
Q 001224 437 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ 508 (1120)
Q Consensus 437 dg~-~las~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~---~~~ 508 (1120)
++. +|++|+.||.|++|++.++.. +.....+.+|...|.+++|+|++.. ++++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 2234467789999999999995544 7999999999999999987 577
Q ss_pred EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224 509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
..+..|...|.+++|++... .++++|+.||.|++||++. ......+..|...|.+++|+|++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~--------------- 334 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE--------------- 334 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence 88889999999999976542 4799999999999999997 445667777777777777777765
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC--------------CceeEEEecCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEE
Q 001224 588 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA 652 (1120)
Q Consensus 588 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd 652 (1120)
..|++++.||.|++||+.. .+.+..+..| ...|.+++|+|++. ++++++.||.|++|+
T Consensus 335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 4689999999999999987 2445555444 44799999999999 999999999999999
Q ss_pred ccCc
Q 001224 653 TSDG 656 (1120)
Q Consensus 653 ~~~~ 656 (1120)
+...
T Consensus 408 ~~~~ 411 (430)
T 2xyi_A 408 MAEN 411 (430)
T ss_dssp ECHH
T ss_pred cccc
Confidence 8754
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.7e-27 Score=275.43 Aligned_cols=320 Identities=15% Similarity=0.177 Sum_probs=237.8
Q ss_pred ceEEEE---EcCCCCeEEEE--------------ECCCeEEEEEcc--CCceeeeeeeecccccCeEEEEEcCCCCceEE
Q 001224 428 SVNRVI---WSPDGSLFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 488 (1120)
Q Consensus 428 ~V~~l~---~spdg~~las~--------------~~dg~v~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l 488 (1120)
.+..++ |+|+++.++.. +.++.+.||.++ ++. ......+..+ ..+.+++|+|++. ++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~ 137 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA 137 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence 455666 66666655543 333433555554 342 2222344444 4566999999655 78
Q ss_pred EEecCCCcEEEEECCCCceeE-----EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCcee
Q 001224 489 ITCGDDKTIKVWDATNGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT 563 (1120)
Q Consensus 489 ~s~s~d~~i~vwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 563 (1120)
++++.|+.|++||+.+++.+. .+.+|...|.+++|. +++.++++++.|+.|++||+.+.+....+..+...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 888999999999999999887 445788899999985 4558999999999999999998777777766666666
Q ss_pred EEEEcCCCCeEEecccccceeEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEE
Q 001224 564 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 642 (1120)
Q Consensus 564 ~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 642 (1120)
+++|+|++. .+ ++++.++.|++||+.+++.+..+..+. .+.+++|+|+|++++++
T Consensus 216 ~~~~~~~~~---------------------~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 216 ILLYDPIRD---------------------LVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTT---------------------EEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCC---------------------EEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEE
Confidence 666666664 56 455589999999999999888876543 48899999999999988
Q ss_pred EC--------CCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcc
Q 001224 643 TN--------DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 714 (1120)
Q Consensus 643 ~~--------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1120)
+. |+.|++||+.++. ....+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~-~~~~~--------------------------------------------------- 299 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEK-LIDTI--------------------------------------------------- 299 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTE-EEEEE---------------------------------------------------
T ss_pred ECCCCccccCCCeEEEEECCCCc-EEeec---------------------------------------------------
Confidence 73 5566666654330 00000
Q ss_pred cccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCC
Q 001224 715 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 794 (1120)
Q Consensus 715 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 794 (1120)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEE-e-CCcEEEEEcCCCceeeeecCCCCCeEEEE
Q 001224 795 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLA 872 (1120)
Q Consensus 795 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 872 (1120)
.+...+.+++|+|+++.+++. + ++.|++||+.+++.+..+. +...+.+++
T Consensus 300 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~ 351 (433)
T 3bws_A 300 ---------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA 351 (433)
T ss_dssp ---------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred ---------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence 022245567788888755443 4 7889999998888877776 667899999
Q ss_pred EecCCCcEEEEEeC---------------CCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeC-CCCEEEEE
Q 001224 873 FHPQDNNIIAIGMD---------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWS 936 (1120)
Q Consensus 873 ~sp~d~~~lasg~~---------------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd 936 (1120)
|+| ++++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++++. |+.|++|+
T Consensus 352 ~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 352 LSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp ECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 999 8888888776 579999999999988888764 57899999999999988775 99999999
Q ss_pred CCC
Q 001224 937 SDG 939 (1120)
Q Consensus 937 ~~~ 939 (1120)
++.
T Consensus 430 ~~~ 432 (433)
T 3bws_A 430 RDG 432 (433)
T ss_dssp ETT
T ss_pred ecC
Confidence 864
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.3e-26 Score=265.65 Aligned_cols=227 Identities=15% Similarity=0.121 Sum_probs=179.3
Q ss_pred CeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE-EEEECCCeEEEEEc
Q 001224 377 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY 455 (1120)
Q Consensus 377 ~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~dg~v~iwd~ 455 (1120)
++++++++.|+.|++||+.+++.+.. +.+|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 34799999999999999999987753 34454 58999999999987 56778999999999
Q ss_pred cCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEE-EE
Q 001224 456 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS 534 (1120)
Q Consensus 456 ~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 534 (1120)
.+++.+. .+..|. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..| ..+.+++|+++ ++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d--g~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD--GKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT--SSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC--CCEEEEE
Confidence 9988665 344443 8999999999995 4466778899999999999998888754 56788998654 4555 78
Q ss_pred EecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE-EEEeCCCeEEEEECCCCc
Q 001224 535 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ 613 (1120)
Q Consensus 535 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~ 613 (1120)
++.|+.|++||+.+.+....+..+ ..+..+ +|+|+++++ ++++.++.|++||+.+++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~---------------------~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGI---------------------AVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEE---------------------EECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceE---------------------EECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 888999999999876555444432 223444 455555566 567789999999999998
Q ss_pred eeEEEecCCCCCCcCeEEEcCCCCEEEEEE---CCCcEEEEEccCc
Q 001224 614 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG 656 (1120)
Q Consensus 614 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~ 656 (1120)
.+..+..+. .+.+++|+|+++++++++ .++.|++||+.++
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 192 VIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred EEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 888876433 578999999999999888 6899999998765
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-27 Score=276.62 Aligned_cols=263 Identities=15% Similarity=0.058 Sum_probs=200.6
Q ss_pred CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc---eeEeeceeee---ccCC-------------------------
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVW---DLGA------------------------- 412 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~---~~~~~~~~~~---~~~~------------------------- 412 (1120)
..++++++|+|||+ +|+++ .++.|++||+.+|+ .+.......- ....
T Consensus 4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 35789999999999 45554 47899999999998 4432111000 0000
Q ss_pred -------CCcccccccccCCCCceEEEEEcCCCCeE-EEEECCCeEEEEEcc--CCceeeeeeeecccccCeEEEEEcCC
Q 001224 413 -------CSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP 482 (1120)
Q Consensus 413 -------~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~dg~v~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d 482 (1120)
...........+|.+.|.+++|+|+|++| ++|+.||.|+|||+. +++.+... ....|...|.+++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAISIAED 160 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEEECTT
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEEEcCC
Confidence 00000111234677789999999999996 889999999999999 77766522 11357789999999999
Q ss_pred CCceEEEEecCCCcEEEEECCCCceeE----EeeccccCeEEEeeccC-CCceEEEEEecCCeEEEEecCCCCCcee-ee
Q 001224 483 NKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSRVD-YE 556 (1120)
Q Consensus 483 ~~~~~l~s~s~d~~i~vwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~ 556 (1120)
++ +|++|+.|+.|++|++.++.... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.+...... +.
T Consensus 161 ~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 161 DT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp SS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC
T ss_pred CC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec
Confidence 99 79999999999999998887554 78889999999999875 2257999999999999999988776655 34
Q ss_pred CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC---------------
Q 001224 557 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD--------------- 621 (1120)
Q Consensus 557 ~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------- 621 (1120)
.|...|.+++|+ ++ ++|++++.|+.|++||+.+++.+..+..+
T Consensus 239 ~h~~~v~~~~~s-d~---------------------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (450)
T 2vdu_B 239 GHKHFVSSICCG-KD---------------------YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP 296 (450)
T ss_dssp CCSSCEEEEEEC-ST---------------------TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--
T ss_pred CCCCceEEEEEC-CC---------------------CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccc
Confidence 566666666655 44 58999999999999999999988887632
Q ss_pred --------CCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEc
Q 001224 622 --------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT 653 (1120)
Q Consensus 622 --------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~ 653 (1120)
.....+.+++|+|+++++++++ .++.|++|++
T Consensus 297 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 297 RFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp --------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 1123578999999999999999 8999999998
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3.1e-28 Score=278.00 Aligned_cols=267 Identities=10% Similarity=-0.031 Sum_probs=186.6
Q ss_pred cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-----
Q 001224 362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP----- 436 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp----- 436 (1120)
.|...+....+++++. ++|+|+.|++|+|||+.+++......+. .+.||.+.|++++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~--------------~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLG--------------GKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEEC--------------TTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeec--------------ccCCCCCceEEEEEccccccc
Confidence 3555555556666666 6999999999999999988765432221 4789999999999998
Q ss_pred ---CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe--
Q 001224 437 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 511 (1120)
Q Consensus 437 ---dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-- 511 (1120)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++.....
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999999877554 56678999999999999865 7999999999999999987654322
Q ss_pred -----------------------eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEc
Q 001224 512 -----------------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 568 (1120)
Q Consensus 512 -----------------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 568 (1120)
.+|...|.++.|. .+++..|++++.|+++++||+........+..+...+..+.+.
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 3577778888875 3567899999999999999999888777777788888888888
Q ss_pred CCCCeEEecccccceeEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001224 569 ADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 647 (1120)
Q Consensus 569 ~~g~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 647 (1120)
|+++.... ....+..+.+.+.+. ++++|+.||.|++||+.+++....+..+.. .|.+++|+|||++||+++.+|
T Consensus 307 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 307 PNVQGISL--FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp CSEEEECS--SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-
T ss_pred cccccccc--cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-
Confidence 87643211 122233333444344 556678899999999999998887765544 799999999999999998765
Q ss_pred EEEEEc
Q 001224 648 IKILAT 653 (1120)
Q Consensus 648 i~iwd~ 653 (1120)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 556654
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=5.7e-27 Score=248.20 Aligned_cols=294 Identities=14% Similarity=0.116 Sum_probs=208.9
Q ss_pred CeEEEEEc-CCCCceEEEEecCCCcEEEEECCCC---ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224 473 GVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 548 (1120)
Q Consensus 473 ~V~~v~~s-~d~~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 548 (1120)
.+.++-|- +..+.+.+++++. ..|++|+..++ ++++++.+|..+|..+.+.++..+-.-++-+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------- 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN----------- 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS-----------
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc-----------
Confidence 35666663 3445556777775 68999999999 89999999999999999877654322222221
Q ss_pred CCCceeeeCCCCceeEEEEcCC----CCeEEecccccceeEEEEcCCCCEEEEEe--CCCeEEEEEC-CCCceeEEEecC
Q 001224 549 LGSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDAD 621 (1120)
Q Consensus 549 ~~~~~~~~~~~~~v~~~~~s~~----g~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~ 621 (1120)
.+...|..++++|+ ++.+..+.+...+. .+ ++++.+.+++ .|+.|++|++ .+++.+..+..+
T Consensus 109 --------~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~--~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 109 --------LEIREIRALFCSSDDESEKQVLLKSGNIKAVL--GL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp --------SSEEEEEEECC------CCEEEEEEEEEEEEE--EE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred --------ccccceEEEEECCCccccccEEEeCCCeEEEE--ec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 12345788999999 77777765543443 34 5555555533 5999999999 458888888777
Q ss_pred CCCCCcCeEEEcC---CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001224 622 GGLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 698 (1120)
Q Consensus 622 ~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1120)
.. .+..++|++ ++.+|++++.|++|++||+.++ ++++.+.++..
T Consensus 178 ~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~------------------------------ 224 (356)
T 2w18_A 178 PP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS------------------------------ 224 (356)
T ss_dssp CC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC-------------------------------
T ss_pred CC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc------------------------------
Confidence 55 678889998 7899999999999999999988 44444432111
Q ss_pred cccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC
Q 001224 699 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 778 (1120)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 778 (1120)
+...+.+++|+|+|..+++++.+
T Consensus 225 ---------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 225 ---------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp -----------------------------------------------------------CCCEEEEEEETTEEEEEEC--
T ss_pred ---------------------------------------------------------ceeeeEEEEECCCCCEEEEeccC
Confidence 22356778899999877766543
Q ss_pred ceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce
Q 001224 779 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 857 (1120)
Q Consensus 779 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~ 857 (1120)
.. +| .+++|+ |++|++||..+++.
T Consensus 248 ~~--~w-----------------------------------------------------~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 248 CA--KE-----------------------------------------------------SESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp -----------------------------------------------------------------CCEEEEEEETTTTEE
T ss_pred CC--cc-----------------------------------------------------eeeccCCCcEEEEEECCCCEE
Confidence 11 11 356777 89999999999988
Q ss_pred eeee-----cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE-EEEEccCCCEEEEEeCCCC
Q 001224 858 MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQ 931 (1120)
Q Consensus 858 ~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~ 931 (1120)
+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|++|+.|++
T Consensus 273 l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp EEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred EEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 7665 366655444433 467999999999999999999999999999988766 5899999999999999999
Q ss_pred EEEEEC
Q 001224 932 LCVWSS 937 (1120)
Q Consensus 932 v~iWd~ 937 (1120)
|+|||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999985
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.5e-26 Score=265.04 Aligned_cols=329 Identities=8% Similarity=0.091 Sum_probs=241.6
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 518 (1120)
Q Consensus 439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v 518 (1120)
.++++++.|+.|++||+.+++.+. .+.+|. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+. .+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~~-~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA---TIPVGS-NPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE---EeecCC-CcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence 467888999999999999988665 455554 5899999999995 45788899999999999999999888665 89
Q ss_pred EEEeeccCCCceEE-EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE-E
Q 001224 519 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L 596 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l-~ 596 (1120)
.+++|++ ++++| ++++.++.|++||+.+.+....+..+ ..+.++ +|+|+++.+ +
T Consensus 77 ~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~---------------------~~s~dg~~l~~ 132 (391)
T 1l0q_A 77 QGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGL---------------------ALSPDGKKLYV 132 (391)
T ss_dssp EEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEE---------------------EECTTSSEEEE
T ss_pred cceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceE---------------------EECCCCCEEEE
Confidence 9999865 44566 45556799999999876555444332 234444 455555556 6
Q ss_pred EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224 597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 675 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 675 (1120)
+++.++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.++. ....+.
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~----------- 197 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVK----------- 197 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-----------
T ss_pred EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEEEe-----------
Confidence 78889999999999999988887553 46899999999987 566778999999986541 000000
Q ss_pred CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcc
Q 001224 676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 755 (1120)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 755 (1120)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
+...+.+++|+|+
T Consensus 198 -------------------------------------------------------------------~~~~~~~~~~~~~ 210 (391)
T 1l0q_A 198 -------------------------------------------------------------------VEAAPSGIAVNPE 210 (391)
T ss_dssp -------------------------------------------------------------------CSSEEEEEEECTT
T ss_pred -------------------------------------------------------------------cCCCccceEECCC
Confidence 1223456677777
Q ss_pred CCEEEEEe----CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEE-EEEeCCCcEEEEEeecceeeEeecccccc
Q 001224 836 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR 910 (1120)
Q Consensus 836 ~~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~~h~~~ 910 (1120)
++++++++ ++.|++||+.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus 211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 77666654 5789999998888888887654 589999999 77666 67788999999999999998888776654
Q ss_pred eE---EEE------------EccCC----------CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEE
Q 001224 911 IT---GLA------------FSHAL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 965 (1120)
Q Consensus 911 V~---~l~------------~s~d~----------~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 965 (1120)
.. .+. |+.+. ..+...+.|.++++|++..+... .. ......
T Consensus 289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~~--------~~~~~~ 354 (391)
T 1l0q_A 289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------KK--------QNPTHT 354 (391)
T ss_dssp ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE------CS--------SSCEEC
T ss_pred CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc------Cc--------CCCeEE
Confidence 32 122 22221 34666777899999999875421 00 123467
Q ss_pred EccCCcEEEE
Q 001224 966 FHQDQIHFLV 975 (1120)
Q Consensus 966 fspdg~~la~ 975 (1120)
|+++|.|.+.
T Consensus 355 ~~~~g~y~~~ 364 (391)
T 1l0q_A 355 YSETGIYTVR 364 (391)
T ss_dssp CSSCEEEEEE
T ss_pred eCCCceEEEE
Confidence 9999998876
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.5e-28 Score=299.19 Aligned_cols=256 Identities=16% Similarity=0.204 Sum_probs=205.8
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC--ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
.-+|.+.|++++|+|+|++ +++|+.||+|+|||+.++ +.+. .+.+|.++|++++|+|+
T Consensus 5 l~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~ 64 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 64 (753)
T ss_dssp ---CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCT
T ss_pred cccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCC
Confidence 3469999999999999995 999999999999999843 3332 37789999999999998
Q ss_pred --CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEEEEECCCC--ceeEEe
Q 001224 438 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNG--AKQYIF 511 (1120)
Q Consensus 438 --g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~vwd~~~~--~~~~~~ 511 (1120)
+++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++|+.||.|++||+.++ .....+
T Consensus 65 ~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~ 141 (753)
T 3jro_A 65 KFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 141 (753)
T ss_dssp TSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEe
Confidence 99999999999999999999862 233467889999999999999 88 7999999999999999887 345667
Q ss_pred eccccCeEEEeeccCC-----------CceEEEEEecCCeEEEEecCCCCCc----eeeeCCCCceeEEEEcCCCCeEEe
Q 001224 512 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 512 ~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
.+|...|.+++|++.. ++.++++|+.||.|++||++..... ..+..|...|.+++|+|++.
T Consensus 142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~---- 217 (753)
T 3jro_A 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 217 (753)
T ss_dssp ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC----
Confidence 8899999999997742 4679999999999999999876432 23444555555555555410
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---EEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 653 (1120)
.++++++++.||.|++||+.++... .......+...|.+++|+|+|+++++++.||.|++|++
T Consensus 218 --------------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 218 --------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp --------------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred --------------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 0468999999999999999886421 11222234557999999999999999999999999998
Q ss_pred cCc
Q 001224 654 SDG 656 (1120)
Q Consensus 654 ~~~ 656 (1120)
..+
T Consensus 284 ~~~ 286 (753)
T 3jro_A 284 NLE 286 (753)
T ss_dssp CSS
T ss_pred CCC
Confidence 865
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.6e-27 Score=250.78 Aligned_cols=274 Identities=11% Similarity=0.138 Sum_probs=201.6
Q ss_pred eeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCc
Q 001224 724 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 803 (1120)
Q Consensus 724 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 803 (1120)
+.......+++|+......-.....+ .+|+..|..+.+.||-..|++..-..
T Consensus 57 ~~~~~~~~v~lw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~------------------------ 108 (356)
T 2w18_A 57 IITACEDVVSLWKALDAWQWEKLYTW----HFAEVPVLQIVPVPDVYNLVCVALGN------------------------ 108 (356)
T ss_dssp EEEEESSEEEEEEESSSSBEEEEEEE----ECCSSCEEEECCCTTCCSCEEEEECS------------------------
T ss_pred EEEeccceEEEcccCCCccceeeEEE----eccCceeEEEEEcCcccceeeeeecc------------------------
Confidence 34444588999999875332334444 35778999999999877665443221
Q ss_pred eeecCCCCCcccccCCCCCCCCCccEEEEccC----CCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc
Q 001224 804 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN----DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879 (1120)
Q Consensus 804 ~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d----~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 879 (1120)
-+...|.+++++|| ++++++++ ..+++|++. +++
T Consensus 109 ------------------~~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~-----------------------~g~ 146 (356)
T 2w18_A 109 ------------------LEIREIRALFCSSDDESEKQVLLKSG-NIKAVLGLT-----------------------KRR 146 (356)
T ss_dssp ------------------SSEEEEEEECC------CCEEEEEEE-EEEEEEEET-----------------------TTE
T ss_pred ------------------ccccceEEEEECCCccccccEEEeCC-CeEEEEecC-----------------------CCc
Confidence 05667899999999 99999876 337778543 455
Q ss_pred EEEEEe--CCCcEEEEEee-cceeeEeecccccceEEEEEcc---CCCEEEEEeCCCCEEEEECCCcccccceeeeccCC
Q 001224 880 IIAIGM--DDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG 953 (1120)
Q Consensus 880 ~lasg~--~dg~v~vwd~~-~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~ 953 (1120)
++.+++ .|+.|++|++. +|+.+..+.+|...++.++|++ ++.+|||++.|++|+|||+.+++. +..+.+
T Consensus 147 lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-----l~tL~g 221 (356)
T 2w18_A 147 LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-----LKKMHI 221 (356)
T ss_dssp EEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-----EEEEEC
T ss_pred EEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-----EEEEcC
Confidence 555433 47777777773 3677777889999999999999 789999999999999999999764 333333
Q ss_pred CCCCCCCCcEEEEccCCcEEEE-------------EeCCeEEEEEcCCceeeeccc---cCCCCCCeeEEEECCCCcEEE
Q 001224 954 RTPTAQSDTRVQFHQDQIHFLV-------------VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQLVY 1017 (1120)
Q Consensus 954 ~~~~~~~i~~~~fspdg~~la~-------------~~d~~v~i~d~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~ 1017 (1120)
+......+.+++|+|+|+++++ +.|++|++||..+++++..+. +.+|...+.+..++ +.+++
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lA 299 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAA 299 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEE
Confidence 3322246788899999998743 367899999999999876542 34776666555554 88999
Q ss_pred EEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224 1018 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1018 s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
+|+.|++|+|||+.+++.+..+. +|....+. .++|+| |+++|++|+.|++|+|||+.
T Consensus 300 SgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEEECTTSCEEEEEEC
T ss_pred EEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEEEECCCcEEEecCC
Confidence 99999999999999999999887 44444343 589999 69999999999999999963
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.7e-27 Score=274.25 Aligned_cols=246 Identities=9% Similarity=0.040 Sum_probs=200.5
Q ss_pred CCCCccEEEEccCCCEE-EEEe-CCcEEEEEcC--CCceeeeec--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 823 PEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l-~~~s-dg~i~vwd~~--~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
|...|.+++|+|++++| ++++ ||.|++||+. +++.+..+. .|...|++++|+| ++++|++|+.||.|++|++.
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence 66789999999999996 7887 8999999999 888888876 5678899999999 89999999999999999998
Q ss_pred cceeeE----eecccccceEEEEEccC---CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC
Q 001224 897 VDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 969 (1120)
Q Consensus 897 ~~~~~~----~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd 969 (1120)
+++... .+.+|...|++++|+|+ +++|++++.|++|++||+.+++. ......+|. ..|.+++|+ +
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~~~~~~h~---~~v~~~~~s-d 251 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI----VDKWLFGHK---HFVSSICCG-K 251 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC----EEEECCCCS---SCEEEEEEC-S
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce----eeeeecCCC---CceEEEEEC-C
Confidence 876554 78899999999999999 99999999999999999988653 222244554 389999999 9
Q ss_pred CcEEEE-EeCCeEEEEEcCCceeeeccccC-----------------------CCCCCeeEEEECCCCcEEEEEE-cCCc
Q 001224 970 QIHFLV-VHETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDAT 1024 (1120)
Q Consensus 970 g~~la~-~~d~~v~i~d~~~~~~~~~~~~~-----------------------~h~~~v~~l~~s~dg~~l~s~~-~Dg~ 1024 (1120)
+++|++ +.|+.|++||+.+++++..+... .+...|.+++|+|++++|++++ .|+.
T Consensus 252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 999999 58999999999999887766421 2246799999999999999999 8999
Q ss_pred EEEEEc--CCc---ceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeC-------CCcEEEEecCCCCCCC
Q 001224 1025 VCVFSA--ANL---KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKW 1090 (1120)
Q Consensus 1025 v~iwd~--~~~---~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~-------Dg~v~vW~~~~~~~~~ 1090 (1120)
|+||++ .++ +.+..+. ++ ..+. +++|+| + .++++.+. +..|.+|.+....+.|
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~-------~~--~~v~--~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIIT-------FP--YNVI--SLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSF 396 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEE-------CS--SCEE--EEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred EEEEEeccCCCCceeeccEec-------cC--CceE--EEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence 999999 555 5555554 21 1244 899999 4 45555433 5668999987665545
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.7e-27 Score=271.86 Aligned_cols=349 Identities=13% Similarity=0.106 Sum_probs=211.6
Q ss_pred CCCCceEEEE---ecCCCeEEEEEeCCCcEEEEecCCCce-----eEeeceeeeccCCCCc-----ccccccccCCCCce
Q 001224 363 QGSSPMSMDF---HPVQQTLLLVGTNVGDIGLWEVGSRER-----LVLRNFKVWDLGACSM-----PLQAALVKDPGVSV 429 (1120)
Q Consensus 363 h~~~v~~v~~---spdg~~lla~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~V 429 (1120)
-.....++.| +|++..++++| .|+.|.+|+...... ........+....... +........|...+
T Consensus 14 l~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (393)
T 4gq1_A 14 LNVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDG 92 (393)
T ss_dssp TTCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC------
T ss_pred CCCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCc
Confidence 3455667777 45666656665 578899998643211 1111111122111100 00111233455566
Q ss_pred EEEEEcCCCCeEEEEECCCeEEEEEccCCceee--eeeeecccccCeEEEEEcC--------CCCceEEEEecCCCcEEE
Q 001224 430 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITCGDDKTIKV 499 (1120)
Q Consensus 430 ~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~--------d~~~~~l~s~s~d~~i~v 499 (1120)
....+++++.+||+|+.|++|+|||++++.... ....+.||.+.|++|+|+| |++ +|++|+.|++|+|
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~ 170 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLII 170 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEE
Confidence 666777788999999999999999999887543 2345789999999999998 777 7999999999999
Q ss_pred EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224 500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 579 (1120)
Q Consensus 500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 579 (1120)
||+.++.++..+.+|...|.+++|+|.. ..+|++++.||+|++||+.+.........+.......
T Consensus 171 Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~-------------- 235 (393)
T 4gq1_A 171 WRLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW-------------- 235 (393)
T ss_dssp EEEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC--------------
T ss_pred EECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce--------------
Confidence 9999999888888899999999997643 3589999999999999998866544332221111100
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc-CCCCEEEEEECCCcEEEEEccCcch
Q 001224 580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIR 658 (1120)
Q Consensus 580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~ 658 (1120)
.++...... .......++...+.++.|+ ++++.+++++.|+++++||+..+ .
T Consensus 236 ---------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~ 288 (393)
T 4gq1_A 236 ---------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-N 288 (393)
T ss_dssp ---------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred ---------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-C
Confidence 011110000 0011111234468889987 79999999999999999998766 2
Q ss_pred hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224 659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 738 (1120)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 738 (1120)
....+..
T Consensus 289 ~~~~l~~------------------------------------------------------------------------- 295 (393)
T 4gq1_A 289 DYNEISD------------------------------------------------------------------------- 295 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEee-------------------------------------------------------------------------
Confidence 2222211
Q ss_pred cCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccC
Q 001224 739 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 818 (1120)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 818 (1120)
+...+..+.+.+++..+..
T Consensus 296 -----------------~~~~~~~~~~~~~~~~~~~-------------------------------------------- 314 (393)
T 4gq1_A 296 -----------------STMKLGPKNLLPNVQGISL-------------------------------------------- 314 (393)
T ss_dssp -------------------------CCSCSEEEECS--------------------------------------------
T ss_pred -----------------ecCccccEEEccccccccc--------------------------------------------
Confidence 1222223333333321100
Q ss_pred CCCCCCCCccEEEEcc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 819 TDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 819 ~~~~~~~~v~~l~~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
+...+..+.+.+ ++.++++|+ ||+|++||+.+++....+..|...|.+++|+| ||++||+++.+| +.+|.+.
T Consensus 315 ----~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 315 ----FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ----SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEEG
T ss_pred ----cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEEe
Confidence 111122222223 444566777 89999999999998888888999999999999 999999998766 6666553
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1e-26 Score=270.55 Aligned_cols=296 Identities=13% Similarity=0.107 Sum_probs=225.9
Q ss_pred CceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeee--eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224 427 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 504 (1120)
Q Consensus 427 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~--~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~ 504 (1120)
..+.+++|+|++.++++++.++.|++||+.+++...... .+.+|.+.|.+++|++++. ++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 356699999988888888889999999999988654221 3458999999999999998 799999999999999999
Q ss_pred CceeEEeeccccCeEEEeeccCCCceEE-EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224 505 GAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 583 (1120)
Q Consensus 505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i 583 (1120)
++.+..+..|...+.+++|+++. ..+ ++++.|+.|++||+.+.+....+.. ...+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~------------------- 258 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRG------------------- 258 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEE-------------------
T ss_pred ceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceE-------------------
Confidence 99999999999999999987543 455 5666899999999987654443332 222444
Q ss_pred eEEEEcCCCCEEEEEe--------CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEcc
Q 001224 584 GVVQFDTTKNRFLAAG--------DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATS 654 (1120)
Q Consensus 584 ~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~ 654 (1120)
++++|+++.+++++ .||.|++||+.+++.+..+.... .+.+++|+|+++.+ ++++.++.|++||+.
T Consensus 259 --~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 259 --LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp --EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred --EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 45555555777776 58899999999998877764322 47889999999755 556889999999987
Q ss_pred CcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCccee
Q 001224 655 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 734 (1120)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 734 (1120)
++ +....+
T Consensus 334 ~~-~~~~~~----------------------------------------------------------------------- 341 (433)
T 3bws_A 334 EK-KVQKSI----------------------------------------------------------------------- 341 (433)
T ss_dssp TT-EEEEEE-----------------------------------------------------------------------
T ss_pred CC-cEEEEe-----------------------------------------------------------------------
Confidence 65 111111
Q ss_pred eecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcc
Q 001224 735 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 814 (1120)
Q Consensus 735 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~ 814 (1120)
.+...+.+++|+|+|+.+++++.+..
T Consensus 342 --------------------~~~~~~~~~~~s~dg~~l~~~~~~~~---------------------------------- 367 (433)
T 3bws_A 342 --------------------PVFDKPNTIALSPDGKYLYVSCRGPN---------------------------------- 367 (433)
T ss_dssp --------------------ECSSSEEEEEECTTSSEEEEEECCCC----------------------------------
T ss_pred --------------------cCCCCCCeEEEcCCCCEEEEEecCCC----------------------------------
Confidence 02345778999999987777765411
Q ss_pred cccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC-CCcEEE
Q 001224 815 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI 892 (1120)
Q Consensus 815 ~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~v 892 (1120)
. + ...++++|+ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++
T Consensus 368 --------~---~-------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 368 --------H---P-------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRV 427 (433)
T ss_dssp --------C---T-------TTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEE
T ss_pred --------c---c-------ccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEE
Confidence 0 0 223455566 89999999999998888875 45799999999 8888887775 999999
Q ss_pred EEeec
Q 001224 893 YNVRV 897 (1120)
Q Consensus 893 wd~~~ 897 (1120)
|++..
T Consensus 428 ~~~~~ 432 (433)
T 3bws_A 428 YRRDG 432 (433)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99853
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-27 Score=266.10 Aligned_cols=198 Identities=12% Similarity=0.110 Sum_probs=158.1
Q ss_pred CCCCccEEEEcc--CCCEEEEEe-CCcEEEEEcCCCceeeeecC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224 823 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 898 (1120)
Q Consensus 823 ~~~~v~~l~~s~--d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 898 (1120)
|...|.+++++| +++++++++ ||+|++||+.+++....... +...|++++|+| ++.+||+|+.||.|++||+.++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence 667899999999 999999999 99999999999988776643 455799999999 9999999999999999999999
Q ss_pred eee-Eeecc-cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCC--cEEEEccCCcEEE
Q 001224 899 EVK-SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFL 974 (1120)
Q Consensus 899 ~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~fspdg~~la 974 (1120)
+.+ ..+.+ |.+.|++++|+|++.+|++++ |++|++||+.+++... .+.....+. ..+ .+++|+|+|++|+
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPE---FKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eeccccccc---ccccceEEEECCCCCEEE
Confidence 877 78888 999999999999999999999 5599999999865422 111111111 122 4699999999999
Q ss_pred EE-e-CCeEEEEEcCCceeeeccccCCCCCCeeEEEECC---CCcEEEEEEcCCcEEEEEcCCc
Q 001224 975 VV-H-ETQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus 975 ~~-~-d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
++ . |+.+++|++.+.... |. ..++..++|++ +++.+++++.||.++++-....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKN--WT----KDEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTTTEEEEEEECTTTCS--EE----EEEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EecCCCCcEEEEEEcccccc--eE----ecCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 94 4 999999999765432 22 14677888998 8999999999999998865443
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.9e-26 Score=259.16 Aligned_cols=295 Identities=11% Similarity=0.124 Sum_probs=204.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEccCcchhh
Q 001224 582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 582 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
.+.+++|+|++++|++|+.++ +++||..+++.......+ .+..+++.++++.+ ++++.|++|++||..++ +.+
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~-~~~ 94 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK-QDV 94 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEECSSTTEEEEEETTTT-EEE
T ss_pred ceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEEECCccEEEEEECCCC-cEE
Confidence 334444444445788777665 789999988776665432 37778999988887 46777899999998776 221
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
..+.
T Consensus 95 ~~~~---------------------------------------------------------------------------- 98 (355)
T 3vu4_A 95 SRIK---------------------------------------------------------------------------- 98 (355)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224 741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820 (1120)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 820 (1120)
+...|.++.++++. +++ +.++.+++|++.... +.+.. +
T Consensus 99 ---------------~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~---------------------~~~~~-~-- 136 (355)
T 3vu4_A 99 ---------------VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPW---------------------KRITD-D-- 136 (355)
T ss_dssp ---------------CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTC---------------------CBSSC-C--
T ss_pred ---------------CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCc---------------------eeeEE-e--
Confidence 33467888888775 333 347789999874320 11110 0
Q ss_pred CCCCCCccEEEEccCCCEEEEE--e-CCcEEEEEcCCCc----------------eeeeecCCCCCeEEEEEecCCCcEE
Q 001224 821 SNPEEAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFK----------------TMATFMPPPPAATFLAFHPQDNNII 881 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~--s-dg~i~vwd~~~~~----------------~~~~~~~~~~~i~~l~~sp~d~~~l 881 (1120)
......+++++ .+++++ + +|.|++||+.++. .+..+.+|...|++++|+| ++++|
T Consensus 137 ---~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l 210 (355)
T 3vu4_A 137 ---IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMV 210 (355)
T ss_dssp ---EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEE
T ss_pred ---ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEE
Confidence 01334566667 667764 4 8999999998765 2678899999999999999 99999
Q ss_pred EEEeCCCc-EEEEEeecceeeEeec-c-cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCC
Q 001224 882 AIGMDDSS-IQIYNVRVDEVKSKLK-G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 958 (1120)
Q Consensus 882 asg~~dg~-v~vwd~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~ 958 (1120)
|+|+.||+ |++||+.+++++..+. + |...|++++|+||+++|++++.|++|++||+..+.......+..
T Consensus 211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~-------- 282 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG-------- 282 (355)
T ss_dssp EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT--------
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc--------
Confidence 99999998 9999999999999998 6 99999999999999999999999999999998754322111110
Q ss_pred CCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224 959 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus 959 ~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
+ +.|. ++ ...-.+..+.+. ..+......++|++||++|++++.||.+++|++..++
T Consensus 283 --~----~~~~--~~--~~~~~~~~~~~~----------~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 283 --W----INMK--YF--QSEWSLCNFKLS----------VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp --T----EECC--CC--CCSSCSEEEECC----------CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred --e----eecc--cc--ccccceeEEEec----------cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0 0000 00 000001111111 1223445779999999999999999999999986654
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=2e-26 Score=259.07 Aligned_cols=236 Identities=14% Similarity=0.136 Sum_probs=178.4
Q ss_pred ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224 361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 440 (1120)
Q Consensus 361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 440 (1120)
-.|...|++++|||||+ +||+|+.+| ++|||+.+++..... +...+..+++++++++
T Consensus 16 ~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRMLHRTNY 72 (355)
T ss_dssp ---CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEECTTSSE
T ss_pred ccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEcCCCCE
Confidence 44899999999999999 588888765 789999887665421 1225888999999988
Q ss_pred EE-EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeeccccCe
Q 001224 441 FG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 518 (1120)
Q Consensus 441 la-s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v 518 (1120)
++ +++.|++|+|||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+.. +.
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~ 140 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FG 140 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred EEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CC
Confidence 85 57788999999999998765 344 66799999999864 2333 3789999999988 77766654 33
Q ss_pred EEEeeccCCCceEEEE--EecCCeEEEEecCCCCC----------------ceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224 519 YSVCPHHKENIQFIFS--TALDGKIKAWLYDNLGS----------------RVDYEAPGRWCTTMAYSADGTRTYQGFRK 580 (1120)
Q Consensus 519 ~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 580 (1120)
..+++++ .+++. |+.||.|++||+.+... ...+..|..
T Consensus 141 ~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-------------------- 196 (355)
T 3vu4_A 141 GVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-------------------- 196 (355)
T ss_dssp EEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS--------------------
T ss_pred ceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC--------------------
Confidence 3344444 34554 57899999999987541 333444444
Q ss_pred cceeEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 581 RSLGVVQFDTTKNRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 581 ~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
.+.+++|+|++++|++++.||+ |++||+.+++++..+....+...|.+++|+|+|++|++++.|++|++||+..+
T Consensus 197 -~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 197 -PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp -CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred -ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 4555555555568999999998 99999999999999973213457999999999999999999999999999765
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.9e-27 Score=292.24 Aligned_cols=251 Identities=12% Similarity=0.080 Sum_probs=209.5
Q ss_pred CCCCCccEEEEccCCCEEEEEe-CCcEEEEEcC--CCceeeeecCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEee
Q 001224 822 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 822 ~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~ 896 (1120)
+|.+.|++++|+|+++++++|+ ||.|++||+. +++.+..+.+|...|++++|+| + +++|++|+.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 3999999999999999999998 9999999998 5677888999999999999998 6 8999999999999999999
Q ss_pred cce--eeEeecccccceEEEEEccC--CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc----
Q 001224 897 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ---- 968 (1120)
Q Consensus 897 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp---- 968 (1120)
+++ .+..+.+|...|++++|+|+ +.+|++|+.||.|++||+.++........ .+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE---ECCS---SCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe---ecCC---CceEEEEecCcccc
Confidence 986 77888999999999999999 99999999999999999998644333222 3333 3799999999
Q ss_pred ---------CCcEEEE-EeCCeEEEEEcCCc----eeeeccccCCCCCCeeEEEECCC---CcEEEEEEcCCcEEEEEcC
Q 001224 969 ---------DQIHFLV-VHETQLAIFETTKL----ECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 969 ---------dg~~la~-~~d~~v~i~d~~~~----~~~~~~~~~~h~~~v~~l~~s~d---g~~l~s~~~Dg~v~iwd~~ 1031 (1120)
++.++++ +.|+.|++||+.++ .....+ .+|...|++++|+|+ +++|++|+.||.|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee--cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5888888 48999999999877 333433 488999999999999 9999999999999999999
Q ss_pred CcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1032 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1032 ~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
+++........ ...+| ...+. +++|+| ++.+|++|+.||.|++|++..+.
T Consensus 238 ~~~~~~~~~~~--~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCCBS--SSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeEEe--ccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 87533221111 11122 23355 899999 68999999999999999998654
No 127
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.9e-26 Score=267.06 Aligned_cols=212 Identities=19% Similarity=0.280 Sum_probs=174.9
Q ss_pred cccCCCCceEEEEEcCC-CCeEEEEECCCeEEEEEccCC-------ceeeeeeeecccccCeEEEEEcCCCCceEEEEec
Q 001224 421 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG-------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 492 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~-------~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s 492 (1120)
...+|.+.|++++|+|+ +.+||+++.||.|++|++.+. ........+.+|...|.+++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 45679999999999997 789999999999999999872 112234468899999999999999886 699999
Q ss_pred CCCcEEEEECCCCce-------eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC---CCceeeeCCCCce
Q 001224 493 DDKTIKVWDATNGAK-------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWC 562 (1120)
Q Consensus 493 ~d~~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v 562 (1120)
.||.|++||+.++.. ...+.+|...|.+++|++. ++.+|++++.||.|++||++.. .....+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987432 4667789999999999874 3469999999999999999976 3455556666666
Q ss_pred eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEEecCCCCCCcCeEEEcCCCC-EEE
Q 001224 563 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGC-LLA 640 (1120)
Q Consensus 563 ~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 640 (1120)
.+++|+|++. ..+++|+.||.|++||+++ +..+..+..|. ..|.+++|+|+++ +|+
T Consensus 281 ~~i~~~p~~~--------------------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~--~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 281 NCLSFNPYSE--------------------FILATGSADKTVALWDLRNLKLKLHSFESHK--DEIFQVQWSPHNETILA 338 (430)
T ss_dssp EEEEECSSCT--------------------TEEEEEETTSEEEEEETTCTTSCSEEEECCS--SCEEEEEECSSCTTEEE
T ss_pred EEEEeCCCCC--------------------CEEEEEeCCCeEEEEeCCCCCCCeEEeecCC--CCEEEEEECCCCCCEEE
Confidence 6666666654 3688999999999999998 56778887654 4799999999985 799
Q ss_pred EEECCCcEEEEEccCc
Q 001224 641 VSTNDNGIKILATSDG 656 (1120)
Q Consensus 641 ~~~~dg~i~iwd~~~~ 656 (1120)
+++.|+.|++||+...
T Consensus 339 s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEETTSCCEEEEGGGT
T ss_pred EEeCCCcEEEEeCCCC
Confidence 9999999999998763
No 128
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.8e-27 Score=262.66 Aligned_cols=280 Identities=8% Similarity=0.051 Sum_probs=214.2
Q ss_pred EEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC
Q 001224 478 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 557 (1120)
Q Consensus 478 ~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 557 (1120)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+..
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~---------- 103 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPG---------- 103 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETT----------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEcc----------
Confidence 4456666 79999999999999999999988886 466777777654 9999999999999764
Q ss_pred CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC--C
Q 001224 558 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D 635 (1120)
Q Consensus 558 ~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~ 635 (1120)
+.+.+|++.+++.+..+.. .+...|.+++|+| +
T Consensus 104 --------------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 104 --------------------------------------------NQITILDSKTNKVLREIEV-DSANEIIYMYGHNEVN 138 (343)
T ss_dssp --------------------------------------------TEEEEEETTTCCEEEEEEC-CCSSCEEEEECCC---
T ss_pred --------------------------------------------CceEEeecCCcceeEEeec-CCCCCEEEEEcCCCCC
Confidence 3567899988887776652 2334799999999 9
Q ss_pred CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCccc
Q 001224 636 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR 715 (1120)
Q Consensus 636 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1120)
++++++++.||+|++||+.++. ......
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~-~~~~~~--------------------------------------------------- 166 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDS-QYIVHS--------------------------------------------------- 166 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSC-EEEEEC---------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEECCCCc-EEEEEe---------------------------------------------------
Confidence 9999999999999999998762 111100
Q ss_pred ccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCC
Q 001224 716 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 795 (1120)
Q Consensus 716 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 795 (1120)
..+...+.+++|+|++..+++++.||.|++||+..
T Consensus 167 --------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~------- 201 (343)
T 3lrv_A 167 --------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS------- 201 (343)
T ss_dssp --------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-------
T ss_pred --------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-------
Confidence 01334588999999999999999999999998743
Q ss_pred ccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecC---CCCCeE--E
Q 001224 796 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT--F 870 (1120)
Q Consensus 796 ~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~---~~~~i~--~ 870 (1120)
+......+. .+|...|.+++|+|++.+|++++++.|++||+.+++.+..+.. |...+. +
T Consensus 202 ---------------~~~~~~~~~-~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 202 ---------------PDQASSRFP-VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ---------------TTSCCEECC-CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred ---------------CCCCccEEe-ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence 222201111 1388999999999999999999977999999998877665553 333443 6
Q ss_pred EEEecCCCcEEEEEeC-CCcEEEEEeecceeeEeecccccceEEEEEcc---CCCEEEEEeCCCCEEEEECCC
Q 001224 871 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 871 l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
++|+| ++++|++++. |+.|++|++.+....... .++..++|++ +...|++++.|+.+.++-...
T Consensus 266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 99999 9999999998 999999999765433222 5678889998 889999999999998885443
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.1e-25 Score=262.17 Aligned_cols=335 Identities=12% Similarity=0.136 Sum_probs=241.6
Q ss_pred EEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCccccccccc-CCCCceEEEEEcCCCCeEEEEECCCe
Q 001224 371 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSPDGSLFGVAYSRHI 449 (1120)
Q Consensus 371 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~las~~~dg~ 449 (1120)
+|+|++. ++++++.|++|.+||..+++.+.. +. +|. +..++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3788886 689999999999999999988764 22 343 899999999999999999999
Q ss_pred EEEEEc--cCCceeeeeeeecccccCeEEEEEcC----CCCceEEEEec-CCCcEEEEECCCCceeEEeecc--------
Q 001224 450 VQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH-------- 514 (1120)
Q Consensus 450 v~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~----d~~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~h-------- 514 (1120)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++.++..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7877655 444 345689999999 999 566666 5899999999999999888653
Q ss_pred --c-cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee-eeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224 515 --E-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590 (1120)
Q Consensus 515 --~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~ 590 (1120)
. ..+.++.++++. ..++++...++.|.+||+.+.+.... ...+...+.. +.|+|
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~---------------------~~~sp 333 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHD---------------------GGWDS 333 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCC---------------------EEECT
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccC---------------------ceECC
Confidence 2 267888886643 36788888899999999987654331 1112233334 45555
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCceeEEEecCCCCCCcCeEE-EcCC-CCEEEEEE-CCCcEEEEEccCcchhhhhcccc
Q 001224 591 TKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKD-GCLLAVST-NDNGIKILATSDGIRLLRTFENL 666 (1120)
Q Consensus 591 ~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 666 (1120)
++++++++ ..+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|.+||+.+.. |
T Consensus 334 dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------~ 405 (543)
T 1nir_A 334 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN--------H 405 (543)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------C
T ss_pred CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCC--------C
Confidence 55666654 468999999999999988887422111112233 4676 66666665 57999999986531 0
Q ss_pred cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccc
Q 001224 667 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 746 (1120)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 746 (1120)
... .+
T Consensus 406 ~~~----------~~----------------------------------------------------------------- 410 (543)
T 1nir_A 406 PQY----------AW----------------------------------------------------------------- 410 (543)
T ss_dssp TTT----------BT-----------------------------------------------------------------
T ss_pred chh----------cC-----------------------------------------------------------------
Confidence 000 00
Q ss_pred eeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCC
Q 001224 747 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 826 (1120)
Q Consensus 747 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~ 826 (1120)
. .+.. +. .|...
T Consensus 411 -----------~---------------------~v~~----------------------------------l~--~~g~~ 422 (543)
T 1nir_A 411 -----------K---------------------KVAE----------------------------------LQ--GQGGG 422 (543)
T ss_dssp -----------S---------------------EEEE----------------------------------EE--CSCSC
T ss_pred -----------e---------------------EEEE----------------------------------EE--cCCCC
Confidence 0 0000 00 03445
Q ss_pred ccEEEEccCCCEEEEEe--------CCcEEEEEcCCCcee-eee--------cCCCCCeEEEEEecCCCcEEEEEe----
Q 001224 827 VPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTM-ATF--------MPPPPAATFLAFHPQDNNIIAIGM---- 885 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~s--------dg~i~vwd~~~~~~~-~~~--------~~~~~~i~~l~~sp~d~~~lasg~---- 885 (1120)
+..++++||+++|++++ +++|.+||+.+++.. ..+ ..+...+..++|+| +|+.|+++.
T Consensus 423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~ 501 (543)
T 1nir_A 423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGK 501 (543)
T ss_dssp CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCT
T ss_pred ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCC
Confidence 56688888888888875 468999999988876 443 34567899999999 788777653
Q ss_pred -CCCcEEEEEeecceeeEeeccc
Q 001224 886 -DDSSIQIYNVRVDEVKSKLKGH 907 (1120)
Q Consensus 886 -~dg~v~vwd~~~~~~~~~l~~h 907 (1120)
.|+.|.|||..+++++.+++.+
T Consensus 502 ~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 502 NDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCeEEEEECCCceEEEeecCC
Confidence 4799999999999999988864
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.7e-25 Score=264.40 Aligned_cols=334 Identities=11% Similarity=0.084 Sum_probs=243.6
Q ss_pred EEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEec--CCCCCceee
Q 001224 478 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY--DNLGSRVDY 555 (1120)
Q Consensus 478 ~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~ 555 (1120)
+|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+ ++|++|++++.|++|++||+ .+.+....+
T Consensus 144 ~~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s--pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEEC--CCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 3788886 789999999999999999999999984333 7788874 56689999999999999999 554444433
Q ss_pred eCCCCceeEEEEcCCCCeEEecccccceeEEEEcC----CCCEEEEEe-CCCeEEEEECCCCceeEEEecCCC-------
Q 001224 556 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT----TKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG------- 623 (1120)
Q Consensus 556 ~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~------- 623 (1120)
. ....+.. ++|+| +|+++++++ .+++|.+||..+++++..+...+.
T Consensus 219 ~-~g~~p~~---------------------va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~ 276 (543)
T 1nir_A 219 K-IGIEARS---------------------VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 276 (543)
T ss_dssp E-CCSEEEE---------------------EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred e-cCCCcce---------------------EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc
Confidence 3 2233344 44555 555787777 589999999999999988875321
Q ss_pred --CCCcCeEEEcCCCCEE-EEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccc
Q 001224 624 --LPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 700 (1120)
Q Consensus 624 --~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1120)
...+.++.++|++..+ ++...++.|.+||..+... ..
T Consensus 277 ~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-l~--------------------------------------- 316 (543)
T 1nir_A 277 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LT--------------------------------------- 316 (543)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-CE---------------------------------------
T ss_pred ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-ce---------------------------------------
Confidence 1246678888866544 4445567788887654310 00
Q ss_pred cccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCce
Q 001224 701 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 780 (1120)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 780 (1120)
+..+
T Consensus 317 -----------------------------------------------------------~~~i----------------- 320 (543)
T 1nir_A 317 -----------------------------------------------------------VTSI----------------- 320 (543)
T ss_dssp -----------------------------------------------------------EEEE-----------------
T ss_pred -----------------------------------------------------------eEEe-----------------
Confidence 0000
Q ss_pred EEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCcee
Q 001224 781 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM 858 (1120)
Q Consensus 781 i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~ 858 (1120)
.+...+..++|+|+|+++++++ +++|.+||..+++++
T Consensus 321 -----------------------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 321 -----------------------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp -----------------------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred -----------------------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE
Confidence 0223345688999999877665 689999999999988
Q ss_pred eeecC----CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEeec-------ceeeEeecccccceEEEEEccCCCEEEEE
Q 001224 859 ATFMP----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSS 926 (1120)
Q Consensus 859 ~~~~~----~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~ 926 (1120)
..+.. |.+....+ ++|+++.+++++. .|++|.|||+.+ +++++++.+|...+..++|+||+++|+++
T Consensus 360 ~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~ 438 (543)
T 1nir_A 360 ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD 438 (543)
T ss_dssp EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred EeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence 87764 54444333 5784577788775 689999999998 89999999999999999999999999998
Q ss_pred e-------CCCCEEEEECCCcccccce-eeeccCCCCCCCCCCcEEEEccCCcEEEEE------eCCeEEEEEcCCceee
Q 001224 927 G-------ADSQLCVWSSDGWEKQKNR-FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECV 992 (1120)
Q Consensus 927 s-------~Dg~v~iWd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~fspdg~~la~~------~d~~v~i~d~~~~~~~ 992 (1120)
+ .+++|.|||+.+++..... .+....+.......+..+.|+|+|+.+.++ .++.|.|||..+++++
T Consensus 439 ~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 439 TTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp CTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred cCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 7 2779999999997754111 111111111112478899999999999874 2689999999999999
Q ss_pred eccc
Q 001224 993 KQWV 996 (1120)
Q Consensus 993 ~~~~ 996 (1120)
..+.
T Consensus 519 ~~i~ 522 (543)
T 1nir_A 519 AVVK 522 (543)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 8876
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=3e-23 Score=238.01 Aligned_cols=242 Identities=10% Similarity=0.023 Sum_probs=177.4
Q ss_pred CCCceEEEEecCCCeEEEEEe----CCC----cEEEEec--CCCceeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224 364 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 433 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 433 (1120)
...+...+|++.|..++++|+ .|| +|+|||+ .+++.+... .+.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence 357888899999988888887 467 8999999 888876432 2456777777777
Q ss_pred EcC--------------CCCeEEEEECC------CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC
Q 001224 434 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 493 (1120)
Q Consensus 434 ~sp--------------dg~~las~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~ 493 (1120)
+++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 765 26777777654 799999998654 33 5778999999999999999 6888887
Q ss_pred CC---cEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEE-EEecCCe--EEEEecCCCCCceeeeCCCCceeEEEE
Q 001224 494 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY 567 (1120)
Q Consensus 494 d~---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~ 567 (1120)
++ .|++||+.++++. .+..|...+.+++|++ +|+.|+ +++.++. |++||+.+.+. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 9999999998875 5667888999999865 456666 6666654 99999887543 444445455555555
Q ss_pred cCCCCeEEecccccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC
Q 001224 568 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 644 (1120)
Q Consensus 568 s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 644 (1120)
+||| ++|++++. ++ .|++||+.+++.. .+..+. ..+.+++|+|||++|++++.
T Consensus 275 spdg---------------------~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 275 FPDS---------------------QNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp CTTS---------------------SEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEECTTSSEEEEEEE
T ss_pred CCCC---------------------CEEEEEECCCCCcEEEEEECCCCCEE-EEecCC--CcccCeEECCCCCEEEEEEC
Confidence 5555 46777765 44 6888899887643 333332 35778999999999988876
Q ss_pred C---CcEEEEEccCc
Q 001224 645 D---NGIKILATSDG 656 (1120)
Q Consensus 645 d---g~i~iwd~~~~ 656 (1120)
+ ..|++||+.++
T Consensus 331 ~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 331 NGGQQHIAKQDLATG 345 (415)
T ss_dssp CSSCEEEEEEETTTC
T ss_pred cCCceEEEEEECCCC
Confidence 4 46677766543
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=2.5e-23 Score=238.60 Aligned_cols=303 Identities=11% Similarity=0.082 Sum_probs=219.4
Q ss_pred cccCeEEEEEcCCCCceEEEEec----CCC----cEEEEEC--CCCcee--EEeeccccCeEEEeeccC-----------
Q 001224 470 HVGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK----------- 526 (1120)
Q Consensus 470 h~~~V~~v~~s~d~~~~~l~s~s----~d~----~i~vwd~--~~~~~~--~~~~~h~~~v~~~~~~~~----------- 526 (1120)
+...+...+|++.|.. ++++|+ .|| .|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 3457888899999987 676776 567 8999999 899887 458889888877766531
Q ss_pred -CCceEEEEEecC------CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 527 -ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 527 -~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|+| ++|++++
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg---------------------~~la~~s 197 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG---------------------SKLAYVT 197 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS---------------------SEEEEEE
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC---------------------CEEEEEE
Confidence 013456555543 7999999974 3444444455555555555555 5788888
Q ss_pred CCC---eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEE-EEECCCc--EEEEEccCcchhhhhccccccccccc
Q 001224 600 DDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRT 673 (1120)
Q Consensus 600 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~ 673 (1120)
.++ .|++||+.+++... +..+. ..+.+++|+|||+.|+ +++.++. |++||+.++. . ..+
T Consensus 198 ~~~~~~~i~~~d~~tg~~~~-l~~~~--~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~-~~l---------- 262 (415)
T 2hqs_A 198 FESGRSALVIQTLANGAVRQ-VASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-I-RQV---------- 262 (415)
T ss_dssp CTTSSCEEEEEETTTCCEEE-EECCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-E-EEC----------
T ss_pred ecCCCcEEEEEECCCCcEEE-eecCC--CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-E-EeC----------
Confidence 775 99999999988764 43332 3688999999999888 5555554 8888876651 1 101
Q ss_pred CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCC
Q 001224 674 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 753 (1120)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 753 (1120)
T Consensus 263 -------------------------------------------------------------------------------- 262 (415)
T 2hqs_A 263 -------------------------------------------------------------------------------- 262 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEEEEcCCCceEEEecc-Cc--eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEE
Q 001224 754 NLRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 830 (1120)
Q Consensus 754 ~~~~~~i~~l~~s~~g~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l 830 (1120)
..+...+.+++|+|||+.|++++. ++ .|++|++ .++.... +.. +...+.++
T Consensus 263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~----------------------~~~~~~~--l~~--~~~~~~~~ 316 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI----------------------NGGAPQR--ITW--EGSQNQDA 316 (415)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----------------------TSSCCEE--CCC--SSSEEEEE
T ss_pred cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC----------------------CCCCEEE--Eec--CCCcccCe
Confidence 114456788999999998888876 45 4444443 3333222 111 55678899
Q ss_pred EEccCCCEEEEEe-C---CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEEeecceeeEe
Q 001224 831 ALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSK 903 (1120)
Q Consensus 831 ~~s~d~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~ 903 (1120)
+|+|||++|++++ + ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. ++....
T Consensus 317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~ 392 (415)
T 2hqs_A 317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKAR 392 (415)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEE
T ss_pred EECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEE
Confidence 9999999999887 4 47999999988764 455454 899999999 899888888777 79999986 556788
Q ss_pred ecccccceEEEEEccCC
Q 001224 904 LKGHSKRITGLAFSHAL 920 (1120)
Q Consensus 904 l~~h~~~V~~l~~s~d~ 920 (1120)
+.+|.+.|.+++|+|.-
T Consensus 393 l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 393 LPATDGQVKFPAWSPYL 409 (415)
T ss_dssp CCCSSSEEEEEEECCCC
T ss_pred eeCCCCCCcCCcccccc
Confidence 99999999999999864
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.1e-22 Score=253.96 Aligned_cols=258 Identities=14% Similarity=0.087 Sum_probs=174.0
Q ss_pred CCCceEEEEecCCCeEEEEEeC-CC-----cEEEEecCCCceeEeeceeeec-----cCCCCcccccccccCCCCceEEE
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV 432 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~h~~~V~~l 432 (1120)
...|.+++|||||++ |++++. |+ .|.+||+.+++........... +...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 467999999999996 777666 88 8999999998765421110000 00000000000000001348899
Q ss_pred EEcCCCCeEEEEECCCeEEEEEccCC---ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224 433 IWSPDGSLFGVAYSRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 509 (1120)
Q Consensus 433 ~~spdg~~las~~~dg~v~iwd~~~~---~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~ 509 (1120)
+|||||++|++++. +.|.+||+.++ ... .+..|...+.+++|||||+ +|+.++ ++.|++||+.+++...
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~----~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR----QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC----BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE----EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 99999999999986 99999999988 433 3667888999999999999 577666 4689999999988766
Q ss_pred EeeccccC----------------eEEEeeccCCCceEEEEEecCC---------------------------------e
Q 001224 510 IFEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------K 540 (1120)
Q Consensus 510 ~~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~ 540 (1120)
....+... +.+++|+ +||++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 55444432 3556774 5667888887665 6
Q ss_pred EEEEecCC-CCCceeee--CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe-----CCCeEEEEECCCC
Q 001224 541 IKAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSV 612 (1120)
Q Consensus 541 i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~ 612 (1120)
|.+||+.+ .+...... .+...+ ..++| |||++|++++ .+..|++||+.++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYL---------------------ARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEE---------------------EEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred EEEEECCCCCceEEecCCCCcceEE---------------------EEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 77788776 54332211 122334 44555 5555677654 3678999999999
Q ss_pred ceeEEEecCCCC--CCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224 613 QLLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 613 ~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 654 (1120)
+....+..+... ..+.+++|+|||+++++++.+|.+++|.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 877766543311 135689999999988888888888888653
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.2e-22 Score=253.59 Aligned_cols=343 Identities=12% Similarity=0.018 Sum_probs=224.8
Q ss_pred CCceEEEEEcCCCCeEEEEEC-CC-----eEEEEEccCCceeeeeeeecccc------------------------cCeE
Q 001224 426 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV------------------------GGVN 475 (1120)
Q Consensus 426 ~~~V~~l~~spdg~~las~~~-dg-----~v~iwd~~~~~~~~~~~~l~~h~------------------------~~V~ 475 (1120)
...|.+++|||||++|++++. |+ .|.+||+.+++... .+..+. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 89999999987543 233332 2388
Q ss_pred EEEEcCCCCceEEEEecCCCcEEEEECCCCc--eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce
Q 001224 476 DIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 553 (1120)
Q Consensus 476 ~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 553 (1120)
+++|||||+ +|++++. +.|++||+.++. .+..+..|...+..++|+ +||++|+.++ ++.|++||+.++....
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S--PDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS--PKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC--TTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC--CCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 5777665 999999999883 445677788889999985 4567888887 5699999998754433
Q ss_pred eeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC-------------------------------
Q 001224 554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF------------------------------- 602 (1120)
Q Consensus 554 ~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------------- 602 (1120)
....+...+.. . ....+. ......+..+.|+|||++|++++.|+
T Consensus 187 ~~~~~~~~~~~---g-~~~~v~-~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 187 LTADGSTTIGN---G-IAEFVA-DEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp CCCCCCSSEEE---S-CCCHHH-HHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred eccCCccceec---c-ccceee-eeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 22222211100 0 000000 00000123344444445555554443
Q ss_pred --eEEEEECCC-CceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC-----CCcEEEEEccCcchhhhhcccccccccccC
Q 001224 603 --SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIRLLRTFENLAYDASRTS 674 (1120)
Q Consensus 603 --~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 674 (1120)
.|++||+.+ ++.........+...+..++| |||++|+++.. +..|++||+.++. ....+
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~~----------- 328 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRVLA----------- 328 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-EEEEE-----------
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-eEEEE-----------
Confidence 789999988 876554432223346889999 99999997764 3456666654431 00000
Q ss_pred CCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCc
Q 001224 675 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 754 (1120)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 754 (1120)
T Consensus 329 -------------------------------------------------------------------------------- 328 (741)
T 2ecf_A 329 -------------------------------------------------------------------------------- 328 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224 755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 834 (1120)
Q Consensus 755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~ 834 (1120)
....++ ....+.+++|+|
T Consensus 329 -------------------~~~~~~-------------------------------------------~~~~~~~~~~sp 346 (741)
T 2ecf_A 329 -------------------HETSPT-------------------------------------------WVPLHNSLRFLD 346 (741)
T ss_dssp -------------------EEECSS-------------------------------------------CCCCCSCCEECT
T ss_pred -------------------EcCCCC-------------------------------------------cCCcCCceEECC
Confidence 000000 011234577888
Q ss_pred CCCEEEEEe-CCcEEEEEcC-CCceeeeecCCCCCeEEE-EEecCCCcEE-EEEeCCC--cEEEEEeec-ceeeEeeccc
Q 001224 835 NDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQIYNVRV-DEVKSKLKGH 907 (1120)
Q Consensus 835 d~~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l-~~sp~d~~~l-asg~~dg--~v~vwd~~~-~~~~~~l~~h 907 (1120)
||+++++++ +|.++||.+. ++. ...+..+...+..+ .|+| +++.| ++++.++ .++||++.. ++....+..
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 888777776 6777777664 344 67777777888887 5999 77655 4555565 899999975 555667765
Q ss_pred ccceEEEEEccCCCEEEEEeCC----CCEEEEECCCc
Q 001224 908 SKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGW 940 (1120)
Q Consensus 908 ~~~V~~l~~s~d~~~l~s~s~D----g~v~iWd~~~~ 940 (1120)
...+.+++|||||++|+....+ ..+.+|+...+
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 6678899999999998866544 46888887653
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=5.7e-23 Score=255.87 Aligned_cols=235 Identities=9% Similarity=0.065 Sum_probs=165.0
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC---ceEEEEEcCCCCeE
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF 441 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~l 441 (1120)
..+.+++|||||++ +++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence 34678899999994 666 789999999999987654 2444554 49999999999999
Q ss_pred EEEECC---------CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224 442 GVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 512 (1120)
Q Consensus 442 as~~~d---------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 512 (1120)
|+++.+ +.+.+||+.+++. +......+|...+.+++|||||+ .|+.++. +.|++||+.+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999875 7888999999875 32223345666799999999999 4676665 799999999988877666
Q ss_pred ccccCe------------------EEEeeccCCCceEEEEEecC-CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224 513 GHEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 573 (1120)
Q Consensus 513 ~h~~~v------------------~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 573 (1120)
.+...+ .+++|+ +||+.|++++.| +.+.+|++...... ....+..+.+.++|.
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~- 223 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS- 223 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS-
T ss_pred CCCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC-
Confidence 544433 677875 556788877754 56777876532211 112244455544443
Q ss_pred EEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC----CCCCcCeEEEcCCCCEEEEEECC----
Q 001224 574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND---- 645 (1120)
Q Consensus 574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d---- 645 (1120)
. ..+..|++||+.+++....+..+. +...+.+++|+|||+++++....
T Consensus 224 --------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 224 --------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp --------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred --------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 1 234589999999988656665331 12357889999999988766532
Q ss_pred CcEEEEEccCc
Q 001224 646 NGIKILATSDG 656 (1120)
Q Consensus 646 g~i~iwd~~~~ 656 (1120)
..|++||+.++
T Consensus 280 ~~i~~~d~~~g 290 (723)
T 1xfd_A 280 SILTLCDATTG 290 (723)
T ss_dssp EEEEEEETTTC
T ss_pred EEEEEEeCCCC
Confidence 35666665544
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.3e-21 Score=242.82 Aligned_cols=243 Identities=11% Similarity=0.102 Sum_probs=170.4
Q ss_pred CccEEEEccCCCEEEEEeCCcEEEEEcCC-----CceeeeecCCCCC--------------eEEEEEecCCCcEEEEEe-
Q 001224 826 AVPCFALSKNDSYVMSASGGKISLFNMMT-----FKTMATFMPPPPA--------------ATFLAFHPQDNNIIAIGM- 885 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~-----~~~~~~~~~~~~~--------------i~~l~~sp~d~~~lasg~- 885 (1120)
.+.+++|||||++|+++.++.|++||+.+ ++.......+... +.+++||| |+++|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 35556777777777776677788888776 6554443333332 58999999 899999887
Q ss_pred --------------------------------CCCcEEEEEeecceeeEeec--ccccceEEEEEccCCCEEEEEeCCC-
Q 001224 886 --------------------------------DDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADS- 930 (1120)
Q Consensus 886 --------------------------------~dg~v~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg- 930 (1120)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.|+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 44689999999887654442 5777899999999999999988776
Q ss_pred ----CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc--CCcEEEEE-eCCeEEEEEcC-CceeeeccccCCCCC
Q 001224 931 ----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV-HETQLAIFETT-KLECVKQWVPRESSA 1002 (1120)
Q Consensus 931 ----~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp--dg~~la~~-~d~~v~i~d~~-~~~~~~~~~~~~h~~ 1002 (1120)
.|++||+.+++............. ...+..++|+| ||++++++ .++.++||++. ++..+..+. .|..
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~---~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~ 355 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHY---VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEW 355 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSC---CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSS
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCe---ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCe
Confidence 899999998732211111111111 11346789999 99988886 67788888876 566666554 5566
Q ss_pred CeeE-EEECCCCcEEEEEEcC-C----cEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-
Q 001224 1003 PITH-ATFSCDSQLVYACFLD-A----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD- 1075 (1120)
Q Consensus 1003 ~v~~-l~~s~dg~~l~s~~~D-g----~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D- 1075 (1120)
.+.+ ++|+|||+.|+.++.+ + .|+.||+.+++.. .+. . ...+. .++|+| |+++|+.+..+
T Consensus 356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------~---~~~~~--~~~~sp-dg~~l~~~~~~~ 422 (706)
T 2z3z_A 356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT------P---ESGMH--RTQLSP-DGSAIIDIFQSP 422 (706)
T ss_dssp CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC------C---SSSEE--EEEECT-TSSEEEEEEECS
T ss_pred EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc------C---CCceE--EEEECC-CCCEEEEEecCC
Confidence 7876 7999999988766554 3 6777787777633 332 1 11244 799999 68887766444
Q ss_pred ---CcEEEEecCCCC
Q 001224 1076 ---GGVHVFEPLESE 1087 (1120)
Q Consensus 1076 ---g~v~vW~~~~~~ 1087 (1120)
+.|++||+.+++
T Consensus 423 ~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 423 TVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCSCEEEEEESSSCE
T ss_pred CCCcEEEEEECCCCe
Confidence 469999998775
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=4.1e-21 Score=215.20 Aligned_cols=301 Identities=10% Similarity=0.138 Sum_probs=200.6
Q ss_pred ceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC-ceEEEeeecccccCCCCccccc
Q 001224 722 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATAS 800 (1120)
Q Consensus 722 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~ 800 (1120)
.+++++.++.|.+|++...........+ .+...+..++|+|+|+.+++++.+ +.+.+|++..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~------------ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP------------ 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT------------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC------------
Confidence 3444477999999999642211122221 255678889999999988888876 9999999841
Q ss_pred cCceeecCCCCCccc-ccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEc---CCCceeeeecCCCCCeEEEEEe
Q 001224 801 VAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFH 874 (1120)
Q Consensus 801 ~~~~~w~~~~g~~~~-~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~---~~~~~~~~~~~~~~~i~~l~~s 874 (1120)
.++.... ..+. ....+..++|+|+++++++++ ++.|.+||+ ...+....+..+ ..+.+++|+
T Consensus 70 --------~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s 137 (343)
T 1ri6_A 70 --------DDGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS 137 (343)
T ss_dssp --------TTCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC
T ss_pred --------CCCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC
Confidence 1222110 0011 123788999999999887765 688999999 444455555533 458999999
Q ss_pred cCCCcEEEEEe-CCCcEEEEEeec-ceeeE----eecc-cccceEEEEEccCCCEEEEE-eCCCCEEEEECCC--ccccc
Q 001224 875 PQDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSS-GADSQLCVWSSDG--WEKQK 944 (1120)
Q Consensus 875 p~d~~~lasg~-~dg~v~vwd~~~-~~~~~----~l~~-h~~~V~~l~~s~d~~~l~s~-s~Dg~v~iWd~~~--~~~~~ 944 (1120)
| ++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|++++|+.+ ..++.|.+|+++. ++...
T Consensus 138 ~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 138 P-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp T-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred C-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 9 888777776 899999999987 64432 2232 34578899999999977554 4889999999964 33221
Q ss_pred ceeeeccCCCCCCCCCCcEEEEccCCcEEEE-E-eCCeEEEEEcC--C--ceeeeccccCCCCCCeeEEEECCCCcEEEE
Q 001224 945 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT--K--LECVKQWVPRESSAPITHATFSCDSQLVYA 1018 (1120)
Q Consensus 945 ~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~-~d~~v~i~d~~--~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1018 (1120)
................+..++|+|+|++|++ . .++.|.+||+. + .+.+..+. .+. .+.+++|+|||++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEE
Confidence 2222222211111234568999999998876 4 67899999998 3 34444433 223 3899999999999888
Q ss_pred EE-cCCcEEEEEc--CCcceeeeeCCCcccCCCCCCCCccceEEEecCC
Q 001224 1019 CF-LDATVCVFSA--ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1064 (1120)
Q Consensus 1019 ~~-~Dg~v~iwd~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~ 1064 (1120)
++ .|+.|.+|++ .++++...-. ++.| ..|..++|.|+
T Consensus 294 ~~~~~~~v~v~~~d~~~g~~~~~~~----~~~g-----~~p~~i~~~~~ 333 (343)
T 1ri6_A 294 AGQKSHHISVYEIVGEQGLLHEKGR----YAVG-----QGPMWVVVNAH 333 (343)
T ss_dssp ECTTTCEEEEEEEETTTTEEEEEEE----EECS-----SSCCEEEEEEE
T ss_pred ecCCCCeEEEEEEcCCCceeeEccc----cccC-----CCCeeEEEEcc
Confidence 88 5799999955 4665432211 2222 23446888873
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.2e-21 Score=240.67 Aligned_cols=249 Identities=7% Similarity=0.007 Sum_probs=155.5
Q ss_pred CceEEEEecCCCeEEEEEeCCCcEEEEecCCCce--eEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224 366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 443 (1120)
.+..+.|+ |+. +++++.|+ | +||+.+++. ....... .+.. ...........+...|.+++|||| ++++.
T Consensus 27 ~~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~ 97 (706)
T 2z3z_A 27 YVVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVL 97 (706)
T ss_dssp -CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEE
T ss_pred cCCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEE
Confidence 35557888 554 55666677 8 999999876 2210000 0000 000000000112257999999999 66666
Q ss_pred EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-----CceeEEeeccccC-
Q 001224 444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP- 517 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~-----~~~~~~~~~h~~~- 517 (1120)
+. ++.|++||+.+++... +..+...+.+++|||||+ .|+++ .|+.|++||+.+ ++.......+...
T Consensus 98 ~~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred EE-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 64 5999999999886443 556777899999999999 46664 679999999998 8776544444433
Q ss_pred -------------eEEEeeccCCCceEEEEEe---------------------------------cCCeEEEEecCCCCC
Q 001224 518 -------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGS 551 (1120)
Q Consensus 518 -------------v~~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~ 551 (1120)
+.+++|+ +||++|++++ .+..|++||+.++..
T Consensus 170 ~~g~~~~~ee~~~~~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp EESSCCGGGCTTCCCSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred EcccchhhhhcCCCceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 3667775 5668888887 346788888876543
Q ss_pred ceeee--CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceeEEEecCCCC
Q 001224 552 RVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGL 624 (1120)
Q Consensus 552 ~~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 624 (1120)
..... .+... +..++|+|+|+.|++++.++ .|++||+.+++....+......
T Consensus 248 ~~~~~~~~~~~~---------------------~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 248 VYLQTGEPKEKF---------------------LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp EECCCCSCTTCE---------------------EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred EeeccCCCCcee---------------------EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence 22111 12233 44455555556788877665 8999999998433333211111
Q ss_pred ---CCcCeEEEcC--CCCEEEEEECCCcEEEEEcc
Q 001224 625 ---PASPRIRFNK--DGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 625 ---~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~ 654 (1120)
..+.+++|+| ||++++++..++.+++|.+.
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 1246789999 99999998888888888764
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=3.2e-21 Score=240.10 Aligned_cols=277 Identities=10% Similarity=0.046 Sum_probs=185.3
Q ss_pred cEEEEEEcCCCceEEEeccC---------ceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224 759 KISRLIFTNSGNAILALASN---------AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 829 (1120)
Q Consensus 759 ~i~~l~~s~~g~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~ 829 (1120)
.|.+++|||||++|++++.+ +.+++||+ .++..... .....+...+..
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~----------------------~~~~~~~l-~~~~~~~~~~~~ 118 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI----------------------PHGDPQSL-DPPEVSNAKLQY 118 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES----------------------SSCCCEEC-CCTTCCSCCCSB
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEEC----------------------CCCceEec-cCCccccccccc
Confidence 36789999999999988775 45556655 44443111 111125556889
Q ss_pred EEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCe------------------EEEEEecCCCcEEEEEeCCC---
Q 001224 830 FALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAA------------------TFLAFHPQDNNIIAIGMDDS--- 888 (1120)
Q Consensus 830 l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i------------------~~l~~sp~d~~~lasg~~dg--- 888 (1120)
++|||||++|+.++++.|++||+.+++.......+...+ .+++||| ||++||+++.|+
T Consensus 119 ~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~ 197 (723)
T 1xfd_A 119 AGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRV 197 (723)
T ss_dssp CCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTS
T ss_pred cEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCcc
Confidence 999999999999999999999999888766655444333 7899999 899999887553
Q ss_pred -------------------------------cEEEEEeecceeeEeeccc------ccceEEEEEccCCCEEEEEeC---
Q 001224 889 -------------------------------SIQIYNVRVDEVKSKLKGH------SKRITGLAFSHALNVLVSSGA--- 928 (1120)
Q Consensus 889 -------------------------------~v~vwd~~~~~~~~~l~~h------~~~V~~l~~s~d~~~l~s~s~--- 928 (1120)
.|++||+.+++....+..| ...+.+++|||||++|++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 277 (723)
T 1xfd_A 198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ 277 (723)
T ss_dssp CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS
T ss_pred ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC
Confidence 7999999988765666654 677999999999999877653
Q ss_pred -CCCEEEEECCCcccccceeeecc-CCCCCCCCCCcEEEEccCCcEEEE--E-eCC------eEEEEE-cCCce--eeec
Q 001224 929 -DSQLCVWSSDGWEKQKNRFLQIP-TGRTPTAQSDTRVQFHQDQIHFLV--V-HET------QLAIFE-TTKLE--CVKQ 994 (1120)
Q Consensus 929 -Dg~v~iWd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~fspdg~~la~--~-~d~------~v~i~d-~~~~~--~~~~ 994 (1120)
+..|++||+.+++... ..... .+... .....++|+|||+.|+. + .++ .|.+|| ..++. +...
T Consensus 278 ~~~~i~~~d~~~g~~~~--~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 353 (723)
T 1xfd_A 278 NVSILTLCDATTGVCTK--KHEDESEAWLH--RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS 353 (723)
T ss_dssp CEEEEEEEETTTCCEEE--EEEEECSSCCC--CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB
T ss_pred CeEEEEEEeCCCCcceE--EEEeccCCEEe--ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE
Confidence 3579999999875422 11111 11100 00137899999997775 2 455 466777 34444 1444
Q ss_pred cccCCCCCCeeE-EEECCCCcEEEEEEcC---CcEEEEEcCCcc--eeeeeCCCcccCCCCCCCCccceEEEecCCCCCE
Q 001224 995 WVPRESSAPITH-ATFSCDSQLVYACFLD---ATVCVFSAANLK--LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1068 (1120)
Q Consensus 995 ~~~~~h~~~v~~-l~~s~dg~~l~s~~~D---g~v~iwd~~~~~--~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~ 1068 (1120)
+. .+...+.. ++|||||++|+..+.+ +.++||+++... ....+. .... | ...+. .++|+| |+++
T Consensus 354 l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~--~~~~--~-~~~~~--~~~~sp-dg~~ 423 (723)
T 1xfd_A 354 IT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS--CDLV--E-NCTYF--SASFSH-SMDF 423 (723)
T ss_dssp SC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS--TTSS--S-SCCCC--EEEECT-TSSE
T ss_pred ee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec--cccc--C-CCCeE--EEEECC-CCCE
Confidence 43 22344554 6999999999876655 789999987532 222222 0000 1 12244 799999 5777
Q ss_pred EEEEe
Q 001224 1069 FALGL 1073 (1120)
Q Consensus 1069 l~s~~ 1073 (1120)
|+...
T Consensus 424 l~~~~ 428 (723)
T 1xfd_A 424 FLLKC 428 (723)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 66543
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=2e-20 Score=209.64 Aligned_cols=245 Identities=11% Similarity=0.144 Sum_probs=174.2
Q ss_pred CCCCccEEEEccCCCEEEEEe-C-CcEEEEEcC--CCc--eeeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEe
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV 895 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~ 895 (1120)
+...+.+++|+|+++++++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|++||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 556788899999999998887 4 899999997 444 334455434 789999999 788776555 4889999999
Q ss_pred ---ecceeeEeecccccceEEEEEccCCCEEEEEe-CCCCEEEEECCC-cccccce--eeeccCCCCCCCCCCcEEEEcc
Q 001224 896 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ 968 (1120)
Q Consensus 896 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~-~~~~~~~--~~~~~~~~~~~~~~i~~~~fsp 968 (1120)
.+.+.+..+..+ ..+.+++|+|||++|++++ .|+.|.+||+.+ ++..... ......+ ..+..++|+|
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p 187 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP 187 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence 555566666654 3588999999999888777 899999999987 4332111 1222222 2567899999
Q ss_pred CCcEEEE-E-eCCeEEEEEcCC--cee--eeccc--cCCC--CCCeeEEEECCCCcEEEEEE-cCCcEEEEEcC--Cc--
Q 001224 969 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYACF-LDATVCVFSAA--NL-- 1033 (1120)
Q Consensus 969 dg~~la~-~-~d~~v~i~d~~~--~~~--~~~~~--~~~h--~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~--~~-- 1033 (1120)
+|+++++ + .++.|.+|++.. ++. ..... ..++ ...+..++|+|||++|+++. .|+.|++||+. ++
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 9998766 4 678999999954 332 11111 1111 34677899999999887554 78999999998 33
Q ss_pred ceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe-CCCcEEEEecCCCC
Q 001224 1034 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1087 (1120)
Q Consensus 1034 ~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~-~Dg~v~vW~~~~~~ 1087 (1120)
+.+..+. .+ .. +..++|+| |+++|++++ .|+.|.+|++....
T Consensus 268 ~~~~~~~------~~--~~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 268 SKEGFQP------TE--TQ---PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp EEEEEEE------CS--SS---CCCEEECT-TSSEEEEECTTTCEEEEEEEETTT
T ss_pred EEeeeec------CC--Cc---cceEEECC-CCCEEEEecCCCCeEEEEEEcCCC
Confidence 3333333 11 11 33799999 688887777 68999999776433
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=7e-20 Score=204.04 Aligned_cols=239 Identities=13% Similarity=0.082 Sum_probs=171.9
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC-CC
Q 001224 370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH 448 (1120)
Q Consensus 370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-dg 448 (1120)
..|.+++.+++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457788888899999999999999999987653 22345556 9999999998777766 88
Q ss_pred eEEEEEccCCce-eeeeeeecccccCeEEEEEcCCCCceEEEEecCC-C--cEEEEECCCCceeEEeeccccCeEEEeec
Q 001224 449 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH 524 (1120)
Q Consensus 449 ~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d-~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 524 (1120)
.|.+||..+++. .. .+..+..+..+++|+|+|+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999875 33 4555666666699999999 46655544 3 8999999999998887754 446788886
Q ss_pred cCCCce-EEEEEecCCe-EEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE-EeCC
Q 001224 525 HKENIQ-FIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDD 601 (1120)
Q Consensus 525 ~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d 601 (1120)
+ +|+ ++++...++. |.+|++...+...... ....+.+ .....++++|+++++++ +..+
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~~~~~~~---------~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTG--------QEFISGG---------TRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------EEEECSS---------SSEEEEEECTTSSEEEEEETTT
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecC--------CccccCC---------CCccceEECCCCCEEEEEeCCC
Confidence 5 445 4445555678 9999998654332111 0000111 13456677777776655 4568
Q ss_pred CeEEEEECCCCce---eEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCc
Q 001224 602 FSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 656 (1120)
Q Consensus 602 g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 656 (1120)
+.|++||+.+++. +..+... ..+..++|+|||++++++. .++.|.+||..++
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 9999999999988 7777644 3478899999999877665 4778999998776
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=3.2e-20 Score=206.80 Aligned_cols=285 Identities=13% Similarity=0.068 Sum_probs=196.5
Q ss_pred EEcCCCce-EEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEE
Q 001224 764 IFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 842 (1120)
Q Consensus 764 ~~s~~g~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~ 842 (1120)
.|.+++.. +++.+.++.|.+||.. +++...... . +...+ .++|+|+|++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~~ 57 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQIT-L--GYDFV-DTAITSDCSNVVVT 57 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEE-C--CCCEE-EEEECSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEE-c--cCCcc-eEEEcCCCCEEEEE
Confidence 45555554 5666778899988763 333322211 1 34445 99999999977766
Q ss_pred e--CCcEEEEEcCCCce-eeeecCCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEEeecceeeEeecccccceEEEEE
Q 001224 843 S--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLAF 916 (1120)
Q Consensus 843 s--dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 916 (1120)
+ ++.|.+||..+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+ ....+++|
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~ 135 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAI 135 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEE
Confidence 5 68999999999887 666766666555599999 888888655553 8999999999888877654 44689999
Q ss_pred ccCCCEEEE-EeCCCC-EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCcee-
Q 001224 917 SHALNVLVS-SGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC- 991 (1120)
Q Consensus 917 s~d~~~l~s-~s~Dg~-v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~- 991 (1120)
+|||++|++ ...++. |.+|+++............... ...+..++|+|||++++++ .++.|.+||+.+++.
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI 211 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence 999986554 455688 9999998643221111111111 1246899999999977664 578999999999887
Q ss_pred --eeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcce--eeeeCCCcccCCCCCCCCccceEEEecCCCC
Q 001224 992 --VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1066 (1120)
Q Consensus 992 --~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~--~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~ 1066 (1120)
+..+. +...+..++|+|||++|++++ .++.|.+||+.+++. +..+......... ..... ..++|+| |+
T Consensus 212 ~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~sp-dg 284 (331)
T 3u4y_A 212 TLLNAVG---TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR-PLFGA--NQMALNK-TE 284 (331)
T ss_dssp EEEEEEE---CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG-GGTTC--CCEEECT-TS
T ss_pred ceeeecc---CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC-Ccccc--cceEECC-CC
Confidence 66654 246778999999999877665 478899999999988 3332211000000 00001 2589999 57
Q ss_pred CEEEEE-eCCCcEEEEecCCCC
Q 001224 1067 NEFALG-LSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1067 ~~l~s~-~~Dg~v~vW~~~~~~ 1087 (1120)
++|+++ ..++.|.+|++.+..
T Consensus 285 ~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 285 TKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SEEEEEETTTTEEEEEETTSCE
T ss_pred CEEEEecCCCCcEEEEEecCCc
Confidence 777554 556799999998766
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=6.3e-20 Score=204.95 Aligned_cols=197 Identities=13% Similarity=0.068 Sum_probs=150.7
Q ss_pred cEEEEccCCCEEEEE-------------eCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 828 PCFALSKNDSYVMSA-------------SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 828 ~~l~~s~d~~~l~~~-------------sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
.+++|+|+|++++++ .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEE
Confidence 345566666655555 358899999999888777764 45688899999 88888777 68999999
Q ss_pred eecceeeEeecccccceEEEEEccCCCEEEEEeCCC------------------------CEEEEECCCcccccceeeec
Q 001224 895 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------QLCVWSSDGWEKQKNRFLQI 950 (1120)
Q Consensus 895 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------------------------~v~iWd~~~~~~~~~~~~~~ 950 (1120)
+.+++.+..+..+... ..+.|+||++.|+..+.++ .|.+||+.+++.. .....
T Consensus 161 ~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~- 237 (337)
T 1pby_B 161 PEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR- 237 (337)
T ss_dssp TTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE-
T ss_pred CCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC-
Confidence 9999888777654411 1337899998776554332 3689999887653 11111
Q ss_pred cCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224 951 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus 951 ~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
.+. ..+..++|+|||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+
T Consensus 238 --~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 238 --IMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp --ECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred --CCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 111 246789999999999988 79999999999988877653 346889999999999999999999999999
Q ss_pred CCcceeeeeC
Q 001224 1031 ANLKLRCRIN 1040 (1120)
Q Consensus 1031 ~~~~~~~~~~ 1040 (1120)
.+++.+..+.
T Consensus 309 ~~~~~~~~~~ 318 (337)
T 1pby_B 309 ETLEKKGQVD 318 (337)
T ss_dssp TTCCEEEEEE
T ss_pred cCCcEEEEEE
Confidence 9999998876
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=1.9e-19 Score=202.50 Aligned_cols=273 Identities=11% Similarity=0.104 Sum_probs=204.9
Q ss_pred cccEEEEEEcCCCceEEEecc-------CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224 757 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 829 (1120)
Q Consensus 757 ~~~i~~l~~s~~g~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~ 829 (1120)
...+..++|+|+++.+++++. ++.|.+||. .+++...... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~----------------------~~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDP----------------------VTLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECT----------------------TTCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcC----------------------CCCeEEEEEe----cCCCcce
Confidence 356788999999998887774 456776664 3443322211 2334678
Q ss_pred EEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCC---------eEEEEEecCCCcEEEEEe--CCCcEEEEEee
Q 001224 830 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA---------ATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 896 (1120)
Q Consensus 830 l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~---------i~~l~~sp~d~~~lasg~--~dg~v~vwd~~ 896 (1120)
++++|+|++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999776665 689999999999988877654322 78999999 777666665 47899999999
Q ss_pred cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224 897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 976 (1120)
Q Consensus 897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~ 976 (1120)
+++.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++..... .. +.......+..++|+|+|++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~--~~--~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK--KL--LDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE--EC--CCSSSCCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE--Ec--CCCCCCcccceEEECCCCCEEEEE
Confidence 99998888867777899999999999999999999999999986543221 11 111111356789999999988774
Q ss_pred --eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCC
Q 001224 977 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1053 (1120)
Q Consensus 977 --~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 1053 (1120)
.++.|.+||..+++.+..+... ....++|+|||+++++++ .++.|.+||..+++.+..+.. +
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~----~------- 313 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAP----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT----P------- 313 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECS----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC----C-------
T ss_pred eCCCCEEEEEECCCCcEEEEEEcC----CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec----C-------
Confidence 4589999999999988777642 225799999999776666 689999999999999887651 1
Q ss_pred ccceEEEecCCCCCEEEEEeCCC
Q 001224 1054 VHPLVIAAHPQEPNEFALGLSDG 1076 (1120)
Q Consensus 1054 v~~~~i~~~p~d~~~l~s~~~Dg 1076 (1120)
..+..++|+| |+++|+++..++
T Consensus 314 ~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 THPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp SEEEEEEECT-TSCEEEEEEECC
T ss_pred CCCCeEEEcC-CCCEEEEEEccc
Confidence 1244899999 678776666553
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2e-19 Score=202.39 Aligned_cols=250 Identities=11% Similarity=0.076 Sum_probs=181.9
Q ss_pred ccCCCCceEEEEecCCCeEEEEEeC------CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224 361 LNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 434 (1120)
Q Consensus 361 ~~h~~~v~~v~~spdg~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 434 (1120)
......+..++|+|+|++++++... ++.|.+||..+++.+.... ....+..++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEE
Confidence 3456788999999999975555533 6789999999998765311 1234778999
Q ss_pred cCCCCeEEEE-ECCCeEEEEEccCCceeeeeeeeccccc---------CeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224 435 SPDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 504 (1120)
Q Consensus 435 spdg~~las~-~~dg~v~iwd~~~~~~~~~~~~l~~h~~---------~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~ 504 (1120)
+|||++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+|+.+++...+.++.|.+||..+
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 9999966655 5579999999999886653 333322 27899999999963333324688999999999
Q ss_pred CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224 505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 584 (1120)
Q Consensus 505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~ 584 (1120)
++.+..+..+...+.+++|++ ++.++++++.++.|.+||..+.+....+..... + ....+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~-------~~~~~~ 234 (353)
T 3vgz_A 174 IKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDD----------G-------KEHFFI 234 (353)
T ss_dssp TEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCS----------S-------SCCCEE
T ss_pred CceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----------C-------CCcccc
Confidence 999988876666677788754 557888899999999999987665544433110 0 011233
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCc
Q 001224 585 VVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 656 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 656 (1120)
.++++|+++++++++ .++.|.+||..+++.+..+.... ...++|+|+|++++++. .++.|.+||..++
T Consensus 235 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 235 NISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 455555556666655 45999999999999888887532 35699999999776666 6899999998766
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=4.2e-20 Score=206.33 Aligned_cols=267 Identities=12% Similarity=0.070 Sum_probs=197.7
Q ss_pred ceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCC-CccEEEEccCCCEEEEEe--CCc
Q 001224 770 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK 846 (1120)
Q Consensus 770 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~-~v~~l~~s~d~~~l~~~s--dg~ 846 (1120)
.++++++.++.|.+||+.+ ++.......+ +.. .+..++|+|++++++++. ++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~ 57 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----------------------MAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES 57 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----------------------TEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred cEEEEcCCCCeEEEEECCC----------------------CcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence 3578888899999988632 2222111100 111 477899999998776554 689
Q ss_pred EEEEEcCCCceeeeecCCC-----CCeEEEEEecCCCcEEEEEe------------CCCcEEEEEeecceeeEeeccccc
Q 001224 847 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK 909 (1120)
Q Consensus 847 i~vwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~------------~dg~v~vwd~~~~~~~~~l~~h~~ 909 (1120)
|.+||+.+++.+..+.... ..+.+++|+| ++++|+++. .++.|++||+.+++.+..+.. ..
T Consensus 58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 9999999998877665321 2577899999 888888876 579999999999888777765 45
Q ss_pred ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe--CC--------
Q 001224 910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ET-------- 979 (1120)
Q Consensus 910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~--d~-------- 979 (1120)
.+.+++|+|||++|+++ ++.|.+||+.+++.. ....... ....+.|+|||++++++. ++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~-----~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLV-----EDKPIQS----WEAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEE-----EEECSTT----TTTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEe-----eeeeccc----cCCCceeCCCccEEeeeccCCCceeeeeec
Confidence 67889999999988887 688999999986532 1111111 012237899988776531 22
Q ss_pred ---------------eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcc
Q 001224 980 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1044 (1120)
Q Consensus 980 ---------------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~ 1044 (1120)
.|.+||+.+++.. .+....+...+.+++|+|||++|+++ ++.|++||+.+++.+..+..
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--- 278 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--- 278 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---
T ss_pred cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---
Confidence 4789999998876 44444566788999999999999988 79999999999998877651
Q ss_pred cCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001224 1045 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1088 (1120)
Q Consensus 1045 ~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1088 (1120)
.. .+ ..++|+| |+++|++++.|+.|.+||+.+++.
T Consensus 279 -~~-----~~--~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 279 -PH-----SY--YSVNVST-DGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp -SS-----CC--CEEEECT-TSCEEEEESBSSEEEEEETTTCCE
T ss_pred -CC-----ce--eeEEECC-CCCEEEEEcCCCcEEEEECcCCcE
Confidence 11 13 3799999 688898899999999999999883
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1.7e-19 Score=202.33 Aligned_cols=246 Identities=11% Similarity=0.140 Sum_probs=167.6
Q ss_pred CCCCccEEEEccCCCEEEEEe---CCcEEEEEcCCCc--eeeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEee
Q 001224 823 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR 896 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~ 896 (1120)
+...+..++|+|||+.++++. ++.|++|++.+++ .+..+..+...+..++|+| |+++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 445677899999999443433 3789999997665 3444455677889999999 888888777 78999999996
Q ss_pred c-c--eeeEeecc---------cccceEEEEEccCCCEEEEEeCCCCEEEEECC-CcccccceeeeccCCCCCCCCCCcE
Q 001224 897 V-D--EVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR 963 (1120)
Q Consensus 897 ~-~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 963 (1120)
. + +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 2 33333321 12348899999999977777778899999998 433221111122222 24578
Q ss_pred EEEccCCcEEEEE--eCCeEEEEEcCC--ceee--eccccCCC----CCCeeEEEECCCCcEEE-EEEcCCcEEEEEcCC
Q 001224 964 VQFHQDQIHFLVV--HETQLAIFETTK--LECV--KQWVPRES----SAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1032 (1120)
Q Consensus 964 ~~fspdg~~la~~--~d~~v~i~d~~~--~~~~--~~~~~~~h----~~~v~~l~~s~dg~~l~-s~~~Dg~v~iwd~~~ 1032 (1120)
++|+|||++++++ .++.|.+|++.. ++.. ..+..... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999977774 578999999874 4432 22211110 14588999999999875 455689999999973
Q ss_pred -c--ceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-CcEEEEecCC
Q 001224 1033 -L--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLE 1085 (1120)
Q Consensus 1033 -~--~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-g~v~vW~~~~ 1085 (1120)
+ +.+..+. .+ + ..+..++|+| |+++|++++.+ +.|.+|++..
T Consensus 272 ~g~~~~~~~~~------~~--~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 272 DGHLTLIQQIS------TE--G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp GGCEEEEEEEE------CS--S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred CCcEEEeEEEe------cC--C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeC
Confidence 2 3333332 11 1 2234899999 68888777654 8999996543
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.1e-19 Score=198.58 Aligned_cols=234 Identities=13% Similarity=0.031 Sum_probs=172.9
Q ss_pred CCCCccEEEEccCCCEEEEEeCCcEEEEEcCC-CceeeeecCC-CCCeEEEEEecCCCcEEEEEe--CCCcEEEEEeec-
Q 001224 823 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP-PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRV- 897 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~-~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~- 897 (1120)
|...+.+++|+|+|+++++++++.|++||+.+ ++.......+ ...+.+++|+| ++++|++++ .++.+.||.+..
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence 67789999999999999999999999999998 8777666555 36789999999 899999988 445666766643
Q ss_pred ceeeEeecccccceEEEEEccCCCEEE-EEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224 898 DEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 976 (1120)
Q Consensus 898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~ 976 (1120)
+.....+..+. .+..++|+||+++|+ +++.|+.++||+++..... . .....+. ..+.+++|+|+|++|+++
T Consensus 119 ~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~-~~~~~~~---~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 119 GGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---E-TRLTHGE---GRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp CCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---E-EECCCSS---SCEEEEEECTTSSEEEEE
T ss_pred CCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---c-eEcccCC---CccccceECCCCCEEEEE
Confidence 22244455443 488999999999887 7888999999996542211 1 1122222 367899999999988874
Q ss_pred --eCCeEEEEEcC-CceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----------CcEEEEEcCCcceeeeeCCC
Q 001224 977 --HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINPS 1042 (1120)
Q Consensus 977 --~d~~v~i~d~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----------g~v~iwd~~~~~~~~~~~~~ 1042 (1120)
.++.+++|++. .+.....+. .|...+.+++|+|||++|++++.+ +.|++||+.+++......
T Consensus 191 ~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-- 266 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD-- 266 (297)
T ss_dssp ECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE--
T ss_pred ecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec--
Confidence 47889999886 444444444 567789999999999999988876 569999999987644332
Q ss_pred cccCCCCCCCCccceEEEecCCCCCEEEEEeCCC
Q 001224 1043 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1076 (1120)
Q Consensus 1043 ~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg 1076 (1120)
.. +| ...+. .++|+| |+++|++++.|.
T Consensus 267 --~~-~~-~~~~~--~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 --LF-GG-QGTMN--SPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp --EE-ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred --cC-CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence 11 11 12244 688999 688888777664
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=2.2e-18 Score=197.91 Aligned_cols=314 Identities=13% Similarity=0.151 Sum_probs=199.7
Q ss_pred ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224 758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 837 (1120)
Q Consensus 758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~ 837 (1120)
..+..+++++++..+++++.++ +++|+......... . ......+........ ..+...|.+++|+|+|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg~ 105 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK--P-GDDPNKIVDKVQGLL-------VPMKFPIHHLALSCDNL 105 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC--T-TCCTTCEEECCCCEE-------ECCSSCEEEEEECTTSC
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc--c-ccCcccccccCcccc-------ccCCCcccEEEEcCCCC
Confidence 4577899999999999988887 88887642211000 0 000000000000000 12567899999999999
Q ss_pred EEE----EEe-CCcEEEEEcCCC--------ce---eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224 838 YVM----SAS-GGKISLFNMMTF--------KT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 901 (1120)
Q Consensus 838 ~l~----~~s-dg~i~vwd~~~~--------~~---~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 901 (1120)
+|+ +++ |+.|++||+.++ +. ...+.+|...|.+++|+|+++.+||+|+.||+|++||+.++..+
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 999 666 899999998754 11 35567789999999999954899999999999999999998777
Q ss_pred EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCC-CCCCCCCCcEEEEccCCcEEEEE--eC
Q 001224 902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLVV--HE 978 (1120)
Q Consensus 902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fspdg~~la~~--~d 978 (1120)
....+|...|++++|+|+|++|++|+.||+|++||++ ++.. ..+..... .......|.+++|++++.++++. .+
T Consensus 186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~--~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK--KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE--EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc--ccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 7778899999999999999999999999999999998 3221 11111111 00111368999999999988773 44
Q ss_pred C------eEEEEEcCCcee-----eecccc-----CCCCCCeeEEEECCCCcEEEEEEcC-CcEEEEEcCCcc--e-eee
Q 001224 979 T------QLAIFETTKLEC-----VKQWVP-----RESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLK--L-RCR 1038 (1120)
Q Consensus 979 ~------~v~i~d~~~~~~-----~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~iwd~~~~~--~-~~~ 1038 (1120)
| .+++|++.+.+. ...+.. .+...+-..+.+-+|.+++++++.. +.|.|....... . ...
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~ 342 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL 342 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence 3 399999976521 111110 0112233344444777877766643 446666543211 0 000
Q ss_pred eC--CCcccCCCCCCCCccceEEEec--CCC------------CCEEEEEeCCCcEEEEecCC
Q 001224 1039 IN--PSAYLPAGVSSSNVHPLVIAAH--PQE------------PNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1039 ~~--~~~~~~~g~~~~~v~~~~i~~~--p~d------------~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
+. ....+|-........|+.+++. ..+ ...|..-+.||.|..|.+-.
T Consensus 343 ~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 343 LEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp ECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 00 0111222112233455555543 111 24678888999999999876
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=5e-19 Score=193.36 Aligned_cols=241 Identities=14% Similarity=0.095 Sum_probs=170.3
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCC-CceeEeeceeeeccCCCCcccccccccCC-CCceEEEE
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVI 433 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~ 433 (1120)
+...+..|...|.+++|+|||++ |++++ ++.|.+||+.+ ++... +..+| ...|.+++
T Consensus 33 ~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNNDHG 91 (297)
T ss_dssp EEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSCCE
T ss_pred ceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccceE
Confidence 34556678999999999999996 66665 78999999998 76543 23334 47899999
Q ss_pred EcCCCCeEEEEE--CCCeEEEEEc--cCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC-CCcee
Q 001224 434 WSPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQ 508 (1120)
Q Consensus 434 ~spdg~~las~~--~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~-~~~~~ 508 (1120)
|+|||++|++++ .++.+.||.+ .++. .. .+..+ ..+..++|+||++. ++++++.|+.++||++. .+...
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCE
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCcc
Confidence 999999999998 4455566555 4544 22 24333 35999999999995 34478889999999964 23445
Q ss_pred EEeeccccCeEEEeeccCCCceEEEEEe-cCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224 509 YIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 586 (1120)
Q Consensus 509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~ 586 (1120)
..+..|...+.+++|++ ++.+|+.++ .++.+++|+++. ......+..+...+..+
T Consensus 166 ~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------------- 222 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFP--------------------- 222 (297)
T ss_dssp EECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEE---------------------
T ss_pred eEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCe---------------------
Confidence 66777888999999865 456666555 589999998873 33444444444344444
Q ss_pred EEcCCCCEEEEEeCC-----------CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224 587 QFDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 646 (1120)
Q Consensus 587 ~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 646 (1120)
.|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 455555577776654 569999999887644433222234688999999999998887653
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.4e-18 Score=194.85 Aligned_cols=279 Identities=13% Similarity=0.132 Sum_probs=183.2
Q ss_pred CCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEecc---CceEEEeeecccccCCCCccccccCce
Q 001224 728 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQ 804 (1120)
Q Consensus 728 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~ 804 (1120)
.++.+.+|+++.... ....+.. ..+...+..++|+|+|+ +++++. ++.|.+|++......
T Consensus 14 ~~~~i~v~~~d~~tg--~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------ 76 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK--TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------ 76 (347)
T ss_dssp SCCEEEEEEEETTTT--EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred CCCCEEEEEEcCCCC--eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence 356688888865221 1111111 12445667899999999 665554 589999987432110
Q ss_pred eecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcC-CC--ceeeeecC---------CCCCeEE
Q 001224 805 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TF--KTMATFMP---------PPPAATF 870 (1120)
Q Consensus 805 ~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~-~~--~~~~~~~~---------~~~~i~~ 870 (1120)
.+.. +. .+...+..++|+|||++|++++ ++.|.+|++. ++ ..+..+.. +...+.+
T Consensus 77 --------~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 77 --------KLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp --------EEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred --------Eeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence 0000 00 1456688999999999888887 6889999996 22 22333321 1234889
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEee-cceee--Eeeccc-ccceEEEEEccCCCEEEE-EeCCCCEEEEECCC--cccc
Q 001224 871 LAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVK--SKLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEKQ 943 (1120)
Q Consensus 871 l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~--~~l~~h-~~~V~~l~~s~d~~~l~s-~s~Dg~v~iWd~~~--~~~~ 943 (1120)
++|+| ++++++++..++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++..
T Consensus 146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence 99999 77777777778899999998 45432 222222 236788999999996655 56788999999885 3322
Q ss_pred cceeeeccCCCCCCCCCCcEEEEccCCcEEEE-E-eCCeEEEEEcCC-c--eeeeccccCCCCCCeeEEEECCCCcEEEE
Q 001224 944 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTK-L--ECVKQWVPRESSAPITHATFSCDSQLVYA 1018 (1120)
Q Consensus 944 ~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~-~d~~v~i~d~~~-~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1018 (1120)
.................+..++|+|||++|++ . .++.|.+|++.. + +.+..+. .+...+..++|+|||++|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEE
Confidence 22222222221111134688999999998865 3 578999999973 2 3343333 44567899999999999988
Q ss_pred EEcC-CcEEEE--EcCCcceee
Q 001224 1019 CFLD-ATVCVF--SAANLKLRC 1037 (1120)
Q Consensus 1019 ~~~D-g~v~iw--d~~~~~~~~ 1037 (1120)
++.+ +.|.+| |..++++..
T Consensus 303 ~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 303 VNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EETTTTEEEEEEECTTTCCEEE
T ss_pred EEcCCCcEEEEEEeCCCCeEEe
Confidence 8865 899999 556677653
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=5.3e-19 Score=219.64 Aligned_cols=334 Identities=11% Similarity=0.044 Sum_probs=216.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC-CCCcCeEEEcCCCCEEEEEEC---------CCcEEEEEccC
Q 001224 586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTN---------DNGIKILATSD 655 (1120)
Q Consensus 586 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~ 655 (1120)
+.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++. ++.|++||+.+
T Consensus 21 ~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 45666663 55556799999999999988777654321 013789999999999998876 67888888876
Q ss_pred cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224 656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 735 (1120)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw 735 (1120)
+. .....
T Consensus 100 g~-~~~~~------------------------------------------------------------------------ 106 (719)
T 1z68_A 100 GE-FVRGN------------------------------------------------------------------------ 106 (719)
T ss_dssp TE-ECCSS------------------------------------------------------------------------
T ss_pred Cc-cccce------------------------------------------------------------------------
Confidence 62 10000
Q ss_pred ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224 736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 815 (1120)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 815 (1120)
. -...+..++|||||+.|+.+. ++.|++|++..+... ++- ..+....
T Consensus 107 ------------~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-----------~l~--~~~~~~~ 153 (719)
T 1z68_A 107 ------------E-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-----------QIT--FNGRENK 153 (719)
T ss_dssp ------------C-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-----------ECC--CCCBTTT
T ss_pred ------------e-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-----------EEe--cCCCcCC
Confidence 0 002345688999999888775 678888877432110 000 0000000
Q ss_pred ccCCCCCCC---------CCccEEEEccCCCEEEEEe-CC----------------------------------cEEEEE
Q 001224 816 NDVTDSNPE---------EAVPCFALSKNDSYVMSAS-GG----------------------------------KISLFN 851 (1120)
Q Consensus 816 ~~~~~~~~~---------~~v~~l~~s~d~~~l~~~s-dg----------------------------------~i~vwd 851 (1120)
.+. ++. ....+++|||||++|++++ |. .|++||
T Consensus 154 -v~~--g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 154 -IFN--GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp -EEE--SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred -eEc--ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 000 011 2235899999999999987 42 788999
Q ss_pred cCCCcee--------eeecCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEE----eecceeeEee----cccccce
Q 001224 852 MMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYN----VRVDEVKSKL----KGHSKRI 911 (1120)
Q Consensus 852 ~~~~~~~--------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd----~~~~~~~~~l----~~h~~~V 911 (1120)
+.+++.. ..+.+|...+..++|+| |++++++....+ .|++|| +.++++...+ .+|...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 9987653 22345777899999999 788877754332 488899 7778776666 4677777
Q ss_pred E-----EEEEccCCCEEEE--EeCCCC--EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeC---
Q 001224 912 T-----GLAFSHALNVLVS--SGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--- 978 (1120)
Q Consensus 912 ~-----~l~~s~d~~~l~s--~s~Dg~--v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d--- 978 (1120)
. .+.|+|||+.|+. ...+|. |.+|++.+++. ..+ ..+. ..+..+.++ +++.|+. +.+
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~l---t~~~---~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQI---TSGK---WEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EEC---SCSS---SCEEEEEEE-CSSEEEEEESCGGG
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---Eec---ccCc---eEEEEEEEE-eCCEEEEEEecCCC
Confidence 6 8999999996654 445664 66667666431 111 1111 246677777 8887776 443
Q ss_pred --CeEEEEEcCC--cee-eeccc--cCCCCCCeeEEEECCCCcEEEEEE-cC--CcEEEEEcCCcceeeeeC
Q 001224 979 --TQLAIFETTK--LEC-VKQWV--PRESSAPITHATFSCDSQLVYACF-LD--ATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 979 --~~v~i~d~~~--~~~-~~~~~--~~~h~~~v~~l~~s~dg~~l~s~~-~D--g~v~iwd~~~~~~~~~~~ 1040 (1120)
+..++|.+.. +.. ...+. ..+|...+..+.|||||++++..+ .+ ..+++||+.+++.+..+.
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 6788888754 321 12221 123567788999999999877543 33 468999999988665554
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=4.6e-19 Score=220.18 Aligned_cols=230 Identities=13% Similarity=0.109 Sum_probs=150.8
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC---ceEEEEEcCCCCeEEEEE
Q 001224 369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLFGVAY 445 (1120)
Q Consensus 369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~las~~ 445 (1120)
.++|+|||+ ++++ +.|++|++||+.+++.... +.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~-~~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQ-SADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEE-CTTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEE-cCCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEEe
Confidence 679999996 4555 4699999999999886542 233322 489999999999999987
Q ss_pred C---------CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccc
Q 001224 446 S---------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHE 515 (1120)
Q Consensus 446 ~---------dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~ 515 (1120)
. ++.|++||+.+++.+.. ..+ ...+.+++|||||+. |+.+. |+.|++||+.+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l---~~~~~~~~~SPDG~~--la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRG-NEL---PRPIQYLCWSPVGSK--LAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCS-SCC---CSSBCCEEECSSTTC--EEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccc-eec---CcccccceECCCCCE--EEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 78999999999875210 012 256899999999994 66664 789999999988775432 2333
Q ss_pred cCe-----------------EEEeeccCCCceEEEEEecCC----------------------------------eEEEE
Q 001224 516 APV-----------------YSVCPHHKENIQFIFSTALDG----------------------------------KIKAW 544 (1120)
Q Consensus 516 ~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iw 544 (1120)
..| .+++|+ +||++|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wS--PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWS--PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEEC--TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 322 367774 5668898887652 56677
Q ss_pred ecCCCCCc--ee------eeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC----CeEEEEE----
Q 001224 545 LYDNLGSR--VD------YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD----FSIKFWD---- 608 (1120)
Q Consensus 545 d~~~~~~~--~~------~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd---- 608 (1120)
|+.+.... .. +..+...+. .++|+||+..+++.... ..|++||
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~ 288 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFS---------------------WLTWVTDERVCLQWLKRVQNVSVLSICDFRED 288 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEE---------------------EEEESSSSEEEEEEEESSTTEEEEEEEEECSS
T ss_pred ECCCCCccceeEccCCccCCCCcceEE---------------------EeEEeCCCeEEEEEeccccCeEEEEEEcccCC
Confidence 76654321 01 112333344 44555554445553322 3488999
Q ss_pred CCCCceeEEE----ecCCCCCCcC-----eEEEcCCCCEEEE--EECCCcEEEE
Q 001224 609 MDSVQLLTSI----DADGGLPASP-----RIRFNKDGCLLAV--STNDNGIKIL 651 (1120)
Q Consensus 609 ~~~~~~~~~~----~~~~~~~~v~-----~~~~s~~~~~l~~--~~~dg~i~iw 651 (1120)
..+++....+ ..+. ..+. .++|+|||+.++. +..+|...+|
T Consensus 289 ~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 289 WQTWDCPKTQEHIEESRT--GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH 340 (719)
T ss_dssp SSSEECCGGGEEEEECSS--SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred CCCCceEEEEecccccCC--ceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence 8777655444 2222 2344 7899999996554 4455544443
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=7.8e-18 Score=208.78 Aligned_cols=233 Identities=14% Similarity=0.116 Sum_probs=156.6
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC-----ceEEEEEcCCCC
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 439 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~ 439 (1120)
....+++|+|||+ +++++ ||+|++||+.+++... ++.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence 3456899999998 47776 8999999999998654 2333432 335589999999
Q ss_pred eEEEEECC---------CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE
Q 001224 440 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 510 (1120)
Q Consensus 440 ~las~~~d---------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 510 (1120)
+|++++.+ +.+.+||+.+++... +..|.+.+..++|||||+. |+.+ .|+.|++||+.++...+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEE
Confidence 99999876 566799999987543 6778889999999999995 5655 468999999988876542
Q ss_pred -eeccccCe-----------------EEEeeccCCCceEEEEEecCC-eEEEEecCCCCCceeeeCCCCceeEEEEcCCC
Q 001224 511 -FEGHEAPV-----------------YSVCPHHKENIQFIFSTALDG-KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 571 (1120)
Q Consensus 511 -~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 571 (1120)
..++...+ ..+.| ++||+.|+.++.|. .+.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 23333333 23566 56678888887654 48888764322110 122334445555544
Q ss_pred CeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC---Cc--eeEEEecC----CCCCCcCeEEEcCCCCEEEEE
Q 001224 572 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS 642 (1120)
Q Consensus 572 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~ 642 (1120)
. . .....|++||+.+ ++ ....+... .+...+..++|+|||+.++..
T Consensus 223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 3 1 1123689999998 73 22333321 133457889999999976655
Q ss_pred ECC----CcEEEEEccCc
Q 001224 643 TND----NGIKILATSDG 656 (1120)
Q Consensus 643 ~~d----g~i~iwd~~~~ 656 (1120)
... ..|++||+.++
T Consensus 278 ~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDES 295 (740)
T ss_dssp EESSTTEEEEEEEEEETT
T ss_pred eCCCCCEEEEEEEECCCC
Confidence 432 35777877665
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=6.5e-18 Score=193.95 Aligned_cols=266 Identities=14% Similarity=0.076 Sum_probs=169.7
Q ss_pred CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE-
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG- 442 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la- 442 (1120)
...++.+++++++. ++++|+.|+ |+||+...-...... ..+. .............|...|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKP---GDDP-NKIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCT---TCCT-TCEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhccc---ccCc-ccccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 35689999999999 488888887 899886421110000 0000 0000000111234677899999999999999
Q ss_pred ---EEECCCeEEEEEccCC--------ceeeeeeeecccccCeEEEEEcCC-CCceEEEEecCCCcEEEEECCCCceeEE
Q 001224 443 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI 510 (1120)
Q Consensus 443 ---s~~~dg~v~iwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 510 (1120)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999865 222334467789999999999998 55 799999999999999999988777
Q ss_pred eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224 511 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590 (1120)
Q Consensus 511 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~ 590 (1120)
..+|...|.+++|+++ |.+|++|+.||.|++||++ ......+..+... ...+...+..+.|++
T Consensus 188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~--------------~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY--------------ESDHPVRVLDVLWIG 250 (434)
T ss_dssp EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTC--------------CTTSCEEEEEEEEEE
T ss_pred ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCccc--------------CCCCceeEEEEEEec
Confidence 7889999999999654 6899999999999999987 3333333222110 000011334444444
Q ss_pred CCCEEEE-EeCCC------eEEEEECCCCc-----eeEEEecC-----CCCCCcCeEEEcCCCCEEEEEEC-CCcEEEEE
Q 001224 591 TKNRFLA-AGDDF------SIKFWDMDSVQ-----LLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTN-DNGIKILA 652 (1120)
Q Consensus 591 ~~~~l~~-~~~dg------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd 652 (1120)
++.++++ ...+| .+++|++.... ....+... ........+.+-++.+++++++. .+.|.++.
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA 330 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence 4445544 33343 38999997652 11222111 11111112333366677666654 45567766
Q ss_pred cc
Q 001224 653 TS 654 (1120)
Q Consensus 653 ~~ 654 (1120)
..
T Consensus 331 ~~ 332 (434)
T 2oit_A 331 RQ 332 (434)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=3e-18 Score=192.28 Aligned_cols=236 Identities=13% Similarity=0.093 Sum_probs=179.2
Q ss_pred EEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCC-CCeEEEEEecCCCcEE-EEEeCCCcEEEEEeecceeeEeec
Q 001224 829 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLK 905 (1120)
Q Consensus 829 ~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~ 905 (1120)
.++++++++++++++ +++|++||..+++.+..+..+. ..+..++|+| +++++ +++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 346778888888887 8999999999998888776443 2578999999 77654 555678999999999998877765
Q ss_pred cc------ccceEEEEEccCCCEEEEEeCC------------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEc
Q 001224 906 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 967 (1120)
Q Consensus 906 ~h------~~~V~~l~~s~d~~~l~s~s~D------------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs 967 (1120)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++.... +...... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--eeeccCC----CcccceeEC
Confidence 33 2347899999999999988865 8999999988653221 1111111 257889999
Q ss_pred cCCcEEEEEeCCeEEEEEcCCceeeeccccCC------------------------------------------------
Q 001224 968 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------ 999 (1120)
Q Consensus 968 pdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~------------------------------------------------ 999 (1120)
|||+ ++++ ++.|.+||+.+++.+..+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5543 4459999999988766544221
Q ss_pred ------------------CCCCeeEEEECC-CCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEE
Q 001224 1000 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1060 (1120)
Q Consensus 1000 ------------------h~~~v~~l~~s~-dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~ 1060 (1120)
+...+.+++|+| ||++|+++ ++.|++||+.+++.+..+. ... .+. .++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~-----~~~--~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDH-----TYY--CVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSS-----CCC--EEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCC-----Ccc--ceE
Confidence 011456778889 99999988 8899999999999887765 111 133 799
Q ss_pred ecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1061 AHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1061 ~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
|+| |+++|++++.++.|.+||+.+++
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccc
Confidence 999 57888888899999999999887
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=2.5e-18 Score=207.51 Aligned_cols=234 Identities=10% Similarity=0.041 Sum_probs=167.2
Q ss_pred CCCCceEEEEecCCCeEEEEEeC-CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCC-CceEEEEEcCCCCe
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTN-VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSL 440 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~ 440 (1120)
+..+|++++|+|||++ ||.++. ||++.||++.+++... +..|. ..|..++|||| ++
T Consensus 20 ~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~ 77 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RV 77 (582)
T ss_dssp HHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EE
T ss_pred hccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eE
Confidence 3567999999999997 555554 9999999997665443 33444 68999999999 77
Q ss_pred EEEEEC---CCeEEEEEccC--CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224 441 FGVAYS---RHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 515 (1120)
Q Consensus 441 las~~~---dg~v~iwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 515 (1120)
+++++. +....||.+.. ..... .+..+ ..+...+|+|||+.+++++++.++. .+||+.+++.......+.
T Consensus 78 l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~ 152 (582)
T 3o4h_A 78 ILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG 152 (582)
T ss_dssp EEEEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS
T ss_pred EEEeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC
Confidence 777775 45566766543 22121 23222 2344678999998756666666555 499999988765554333
Q ss_pred cCeEEEeeccCCCceEEEEEecC----CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224 516 APVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 591 (1120)
Q Consensus 516 ~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~ 591 (1120)
.+++|+ +||++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+
T Consensus 153 ---~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~------------------- 207 (582)
T 3o4h_A 153 ---FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK------------------- 207 (582)
T ss_dssp ---CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-------------------
T ss_pred ---ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-------------------
Confidence 566665 566899988776 78999998875543 4555555556666666654
Q ss_pred CCEEEEEeCCC--eEEEEECCCCceeEEEecCCCCCCcCeEE--------EcCCCCEEEEEECCCcEEEEEc
Q 001224 592 KNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIR--------FNKDGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 592 ~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~ 653 (1120)
.|+++..++ .|++||+.+++.. .+..+ ...+..++ |+|||.++++++.++.+++|++
T Consensus 208 --~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 208 --VTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp --EEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred --EEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677777888 8999999998877 54433 33566677 9999999999999999999987
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=4.4e-17 Score=183.71 Aligned_cols=275 Identities=11% Similarity=0.106 Sum_probs=180.9
Q ss_pred cCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC----ceEEEeeecccccCCCCccccccC
Q 001224 727 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN----AIHLLWKWQRTERNSSGKATASVA 802 (1120)
Q Consensus 727 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~ 802 (1120)
+.++.|.+|.++..... ...+.. . +...+..++|+|+|+.|++++.+ +.+.+|++..
T Consensus 24 ~~~~~i~~~~~d~~~g~--~~~~~~--~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~-------------- 84 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGE--SLPLSD--A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK-------------- 84 (361)
T ss_dssp SSCCEEEEEEEETTTCC--EEEEEE--E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET--------------
T ss_pred CCCCCEEEEEEeCCCCC--EEEeec--c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC--------------
Confidence 34578999988643221 111110 1 34566779999999999888875 7999998743
Q ss_pred ceeecCCCCCcccc-cCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeee------cC--------CC
Q 001224 803 PQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF------MP--------PP 865 (1120)
Q Consensus 803 ~~~w~~~~g~~~~~-~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~------~~--------~~ 865 (1120)
.+|.+... ... .+......+++ +++++++++ ++.|.+|++.....+..+ .+ +.
T Consensus 85 ------~~g~~~~~~~~~--~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 154 (361)
T 3scy_A 85 ------EKGTLHLLNTQK--TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM 154 (361)
T ss_dssp ------TTTEEEEEEEEE--CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred ------CCCcEEEeeEec--cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence 12221110 000 13345666777 888888876 689999999754332221 11 12
Q ss_pred CCeEEEEEecCCCcEEEEE-eCCCcEEEEEeecce-------ee------EeecccccceEEEEEccCCCEEEEEe-CCC
Q 001224 866 PAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDE-------VK------SKLKGHSKRITGLAFSHALNVLVSSG-ADS 930 (1120)
Q Consensus 866 ~~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~~~~-------~~------~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg 930 (1120)
..+.+++|+| ++++|+++ ..++.|++|++.... +. .....+...+.+++|+|||++|++++ .++
T Consensus 155 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 233 (361)
T 3scy_A 155 PHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG 233 (361)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred CcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence 3468899999 88755554 458899999987543 11 11223445678999999999887776 689
Q ss_pred CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e--CCeEEEEEcC--Cce--eeeccccCCCCCC
Q 001224 931 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSAP 1003 (1120)
Q Consensus 931 ~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~--d~~v~i~d~~--~~~--~~~~~~~~~h~~~ 1003 (1120)
.|.+|++.+++......+.....+. ..+..++|+|||++|+++ . ++.|.+|++. +++ .+..+. . ...
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~ 307 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIH 307 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSC
T ss_pred eEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCC
Confidence 9999999876443222232222221 245799999999998774 3 4789999996 444 333332 2 457
Q ss_pred eeEEEECCCCcEEEEEE-cCCcEEEEEc--CCcceee
Q 001224 1004 ITHATFSCDSQLVYACF-LDATVCVFSA--ANLKLRC 1037 (1120)
Q Consensus 1004 v~~l~~s~dg~~l~s~~-~Dg~v~iwd~--~~~~~~~ 1037 (1120)
+.+++|+|||++|++++ .++.|.+|++ .++++..
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 88999999999999888 5689999654 5777654
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=4.8e-17 Score=183.43 Aligned_cols=243 Identities=14% Similarity=0.145 Sum_probs=165.0
Q ss_pred CCCCccEEEEccCCCEEEEEe-C----CcEEEEEcCC--Cce--eeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEE
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-G----GKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQI 892 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-d----g~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~v 892 (1120)
+...+..++|+|||++|++++ + +.|.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 355677899999999999887 4 6899998865 432 3334445556777777 455555544 6889999
Q ss_pred EEeecceeeEee------cc--------cccceEEEEEccCCCEEEEEe-CCCCEEEEECCCccc------ccc----ee
Q 001224 893 YNVRVDEVKSKL------KG--------HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEK------QKN----RF 947 (1120)
Q Consensus 893 wd~~~~~~~~~l------~~--------h~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~~~~------~~~----~~ 947 (1120)
|++.....+..+ .+ +...+.+++|+|||++|++++ .++.|.+|+++.... ... ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 999754332221 11 223457899999999776554 588999999886442 111 11
Q ss_pred eeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceee--eccc-cCCCCCCeeEEEECCCCcEEEEEEcC
Q 001224 948 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECV--KQWV-PRESSAPITHATFSCDSQLVYACFLD 1022 (1120)
Q Consensus 948 ~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~~--~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~D 1022 (1120)
.....+ ..+..++|+|||++++++ .++.|.+|++.+++.. ..+. ...+...+..++|+|||++|+++..+
T Consensus 205 ~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 205 FKVAPG-----SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EECCTT-----CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred eecCCC-----CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 122222 246899999999988774 4789999999877542 2221 12334567899999999999777665
Q ss_pred --CcEEEEEcC--Ccce--eeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe-CCCcEEEEecCC
Q 001224 1023 --ATVCVFSAA--NLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLE 1085 (1120)
Q Consensus 1023 --g~v~iwd~~--~~~~--~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~-~Dg~v~vW~~~~ 1085 (1120)
+.|.+|++. ++++ +..+. .+ ..+..++|+| |+++|++++ .++.|.+|++..
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~------~g-----~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQL------TG-----IHPRNFIITP-NGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEE------CS-----SCCCEEEECT-TSCEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEEEcCCCCcEEEeeEec------CC-----CCCceEEECC-CCCEEEEEECCCCCEEEEEEEC
Confidence 899999996 4553 33332 11 2334899999 688887777 679999976653
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=2.6e-18 Score=207.35 Aligned_cols=270 Identities=10% Similarity=0.055 Sum_probs=184.6
Q ss_pred ccCeEEEEEcCCCCceEEEEecC-CCcEEEEECCCCceeEEeeccc-cCeEEEeeccCCCceEEEEEec---CCeEEEEe
Q 001224 471 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAWL 545 (1120)
Q Consensus 471 ~~~V~~v~~s~d~~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd 545 (1120)
..+|++++|+|||+ .|++++. ||+++||++.+++. ..+..|. ..+.+++|++ + +++++++. +...++|.
T Consensus 21 ~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC--C-eEEEEeccCCCCcceEEEE
Confidence 56899999999999 5777776 99999999866655 4455454 6788888864 4 67777765 45566766
Q ss_pred cCC--CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC
Q 001224 546 YDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 623 (1120)
Q Consensus 546 ~~~--~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 623 (1120)
++. .+....+... ..+...+|+|+|+ ..+++.+.++.+.+||+.+++.......+.
T Consensus 95 ~~~~~~g~~~~l~~~-~~~~~~~~s~dg~--------------------~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 95 VNTSRPGEEQRLEAV-KPMRILSGVDTGE--------------------AVVFTGATEDRVALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EETTSTTCCEECTTS-CSBEEEEEEECSS--------------------CEEEEEECSSCEEEEEEETTEEEEEEEESS-
T ss_pred EeccCCCccccccCC-CCceeeeeCCCCC--------------------eEEEEecCCCCceEEEccCCcEEEeecCCC-
Confidence 554 3332222221 1222345555554 223444444555699999987666554321
Q ss_pred CCCcCeEEEcCCCCEEEEEECC----CcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccc
Q 001224 624 LPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 699 (1120)
Q Consensus 624 ~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1120)
.+++|+|||++|++++.+ +.|++||+.++. .. .+
T Consensus 153 ----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~l------------------------------------ 190 (582)
T 3o4h_A 153 ----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-VF------------------------------------ 190 (582)
T ss_dssp ----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-EE------------------------------------
T ss_pred ----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-Ee------------------------------------
Confidence 789999999999988766 567777665441 00 00
Q ss_pred ccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCc
Q 001224 700 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 779 (1120)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 779 (1120)
T Consensus 191 -------------------------------------------------------------------------------- 190 (582)
T 3o4h_A 191 -------------------------------------------------------------------------------- 190 (582)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CC--cEEEEEcCCCc
Q 001224 780 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFK 856 (1120)
Q Consensus 780 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg--~i~vwd~~~~~ 856 (1120)
. .+...+..++|||||++|+++. ++ .|++||+.+++
T Consensus 191 ---------------------------------------~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 191 ---------------------------------------D--SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp ---------------------------------------C--CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred ---------------------------------------e--cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 0 0334456677777777777555 56 78888888877
Q ss_pred eeeeecCCCCCeEEEE--------EecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeC
Q 001224 857 TMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 928 (1120)
Q Consensus 857 ~~~~~~~~~~~i~~l~--------~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~ 928 (1120)
.. .+..|...+..++ |+| |+.++++++.||.+++|++ ++... .+.+.|.+++|+ |++++++++.
T Consensus 230 ~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 230 VE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp EE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred EE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcC
Confidence 76 6666766666667 999 7799999999999999999 66554 344678999999 9999998888
Q ss_pred CCC---EEEEECCC
Q 001224 929 DSQ---LCVWSSDG 939 (1120)
Q Consensus 929 Dg~---v~iWd~~~ 939 (1120)
+.+ +.+|+..+
T Consensus 302 ~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 302 LSTPPRIVSLPSGE 315 (582)
T ss_dssp TTEEEEEEEETTCC
T ss_pred CCCCCeEEEEcCCC
Confidence 754 55666543
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=1.2e-17 Score=188.35 Aligned_cols=251 Identities=11% Similarity=0.100 Sum_probs=170.2
Q ss_pred CCCccEEEEccCCCEEEEEeCCcEEEEEcC-CCceeeeecC-CCCCeEEEEEecCCCcE--EEEEe-------------C
Q 001224 824 EEAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNNI--IAIGM-------------D 886 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~sp~d~~~--lasg~-------------~ 886 (1120)
...+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| |+++ ++++. .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346789999999999998884499999997 7765443221 112366789999 8884 55553 6
Q ss_pred CCcEEEEEee-cceeeEeec----ccccceEEEEEccCCCEEEEEeC-CCCEEEEECC-CcccccceeeeccCCCCCCCC
Q 001224 887 DSSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQ 959 (1120)
Q Consensus 887 dg~v~vwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~-~~~~~~~~~~~~~~~~~~~~~ 959 (1120)
+|.+.+|++. .++....+. .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... +. .
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---D 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---C
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---C
Confidence 8999999997 466544443 25567999999999998887654 6789999998 55432111121111 11 2
Q ss_pred CCcEEEEccCCcEEEEE--eCCeEEEEEcC--Cceee------ecccc--CCCCC------CeeEEE-ECCCCcEEEEEE
Q 001224 960 SDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV------KQWVP--RESSA------PITHAT-FSCDSQLVYACF 1020 (1120)
Q Consensus 960 ~i~~~~fspdg~~la~~--~d~~v~i~d~~--~~~~~------~~~~~--~~h~~------~v~~l~-~s~dg~~l~s~~ 1020 (1120)
.+..++|+|||++++++ .++.|.+|++. +++.. ..+.. .+|.. .+..++ |+|||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 56899999999998885 36799999875 45542 11211 12222 588999 999999988776
Q ss_pred cCC------cEEEEEcC-CcceeeeeCCCcccCCCCCCCCccceEEEecCC--CCCEEEEEeCC-CcEEEEecCCC
Q 001224 1021 LDA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1086 (1120)
Q Consensus 1021 ~Dg------~v~iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~--d~~~l~s~~~D-g~v~vW~~~~~ 1086 (1120)
.+. .|.+|++. ++++..... ..+ .+ ..... .++|+|. |+++|++++.+ +.|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~---~~~-~~-~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLF---LSP-TP-TSGGH--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEE---EEE-CS-SCCTT--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeee---eee-cC-CCCcc--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 433 89999996 676543211 000 00 11122 6889995 58899888765 89999999765
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=9.8e-17 Score=198.89 Aligned_cols=334 Identities=10% Similarity=0.024 Sum_probs=208.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCC-CCc--CeEEEcCCCCEEEEEECC---------CcEEEEE
Q 001224 585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PAS--PRIRFNKDGCLLAVSTND---------NGIKILA 652 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~~~~s~~~~~l~~~~~d---------g~i~iwd 652 (1120)
.+.|+|++.+++++ ||.|++||+.+++....+..+... ..+ ..++|||||++|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 45666666667775 999999999999988777755421 112 347899999999998875 3445666
Q ss_pred ccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcc
Q 001224 653 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 732 (1120)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 732 (1120)
+.++. ..
T Consensus 99 ~~~~~-~~------------------------------------------------------------------------ 105 (740)
T 4a5s_A 99 LNKRQ-LI------------------------------------------------------------------------ 105 (740)
T ss_dssp TTTTE-EC------------------------------------------------------------------------
T ss_pred CCCCc-EE------------------------------------------------------------------------
Confidence 65551 10
Q ss_pred eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224 733 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 812 (1120)
Q Consensus 733 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 812 (1120)
.+ ..+...+...+|||||+.|+.+ .++.|++|++.++.... + . ..|.
T Consensus 106 ---------------~l----~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~-----------l-t-~~g~ 152 (740)
T 4a5s_A 106 ---------------TE----ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR-----------I-T-WTGK 152 (740)
T ss_dssp ---------------CS----SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE-----------C-C-SCCB
T ss_pred ---------------Ec----ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE-----------E-c-CCCC
Confidence 00 1134567889999999998877 46788888864321100 0 0 0000
Q ss_pred cccccCCCCCCC---------CCccEEEEccCCCEEEEEe-C-C-----------------------------------c
Q 001224 813 MMTNDVTDSNPE---------EAVPCFALSKNDSYVMSAS-G-G-----------------------------------K 846 (1120)
Q Consensus 813 ~~~~~~~~~~~~---------~~v~~l~~s~d~~~l~~~s-d-g-----------------------------------~ 846 (1120)
... .+. ++. ....+++|||||++||.++ | + +
T Consensus 153 ~~~-~~~--g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~ 229 (740)
T 4a5s_A 153 EDI-IYN--GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK 229 (740)
T ss_dssp TTT-EEE--SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred ccc-eec--CcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence 000 000 011 2234689999999999875 2 2 4
Q ss_pred EEEEEcCC---Cc--eeeeec------CCCCCeEEEEEecCCCcEEEEEeC----CCcEEEEEeecce----ee--Eee-
Q 001224 847 ISLFNMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VK--SKL- 904 (1120)
Q Consensus 847 i~vwd~~~---~~--~~~~~~------~~~~~i~~l~~sp~d~~~lasg~~----dg~v~vwd~~~~~----~~--~~l- 904 (1120)
|++||+.+ ++ ....+. +|...+..++|+| |+++++.... +..|++||+.+++ +. ..+
T Consensus 230 l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~ 308 (740)
T 4a5s_A 230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI 308 (740)
T ss_dssp EEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE
T ss_pred EEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee
Confidence 78899888 63 223333 3677799999999 8887665543 3379999999987 32 222
Q ss_pred -cccccceE-----EEEEccCCCEEE-EEeC-CC--CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224 905 -KGHSKRIT-----GLAFSHALNVLV-SSGA-DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 974 (1120)
Q Consensus 905 -~~h~~~V~-----~l~~s~d~~~l~-s~s~-Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la 974 (1120)
.+|...|. .++|+|||+.|+ ..+. +| .|.+||+.+++. .+...+. ..+..+. .+|++.|+
T Consensus 309 ~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~----~~v~~~~-~~d~~~i~ 378 (740)
T 4a5s_A 309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGT----WEVIGIE-ALTSDYLY 378 (740)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSS----SCEEEEE-EECSSEEE
T ss_pred eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCC----EEEEEEE-EEeCCEEE
Confidence 45665554 789999999887 6653 33 588888887543 2222332 2344443 35577666
Q ss_pred E-EeC-----C--eEEEEEcCCceeeecccc--CCCCCCeeEEEECCCCcEEEEEEcC---CcEEEEEcCCcceeeeeC
Q 001224 975 V-VHE-----T--QLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 975 ~-~~d-----~--~v~i~d~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~iwd~~~~~~~~~~~ 1040 (1120)
. +.. + .|...++..+.....+.. .+....+..+.|||||++++..... ..+.+++..+++.+..+.
T Consensus 379 f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 379 YISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp EEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 6 432 2 455555555443322321 1234678899999999987765543 468889988887665543
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=3.4e-17 Score=183.73 Aligned_cols=260 Identities=12% Similarity=0.080 Sum_probs=180.4
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE-EECC
Q 001224 369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AYSR 447 (1120)
Q Consensus 369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las-~~~d 447 (1120)
.++++++++ ++++++.+++|.+||+.+++.+.... .+....+..++|+|||+++++ +..+
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~~ 64 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNHY 64 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETTT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCCC
Confidence 456777777 68999999999999999988765311 112225788999999997655 4568
Q ss_pred CeEEEEEccCCceeeeeeeeccc-----ccCeEEEEEcCCCCceEEEEecCC------------CcEEEEECCCCce---
Q 001224 448 HIVQIYSYHGGDEVRQHLEIDAH-----VGGVNDIAFSHPNKQLCVITCGDD------------KTIKVWDATNGAK--- 507 (1120)
Q Consensus 448 g~v~iwd~~~~~~~~~~~~l~~h-----~~~V~~v~~s~d~~~~~l~s~s~d------------~~i~vwd~~~~~~--- 507 (1120)
+.|.+||+.+++.+... .+ ++ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 65 ~~i~~~d~~t~~~~~~~-~~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 140 (349)
T 1jmx_B 65 GDIYGIDLDTCKNTFHA-NL-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 140 (349)
T ss_dssp TEEEEEETTTTEEEEEE-ES-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred CcEEEEeCCCCcEEEEE-Ec-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccce
Confidence 99999999998765422 11 22 23488999999999 56666644 8999999988543
Q ss_pred eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCC---------------------C---cee
Q 001224 508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------------------R---WCT 563 (1120)
Q Consensus 508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~v~ 563 (1120)
+..+.. ...+.+++|++ +|+ ++.++ +.|.+||+.+.+....+.... . ...
T Consensus 141 ~~~~~~-~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (349)
T 1jmx_B 141 VRTFPM-PRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 214 (349)
T ss_dssp SEEEEC-CSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred eeeccC-CCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeee
Confidence 344443 34577777754 556 55554 449999998876655544321 0 233
Q ss_pred EEEEcCCCCeE---------E---e-----------cccccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 001224 564 TMAYSADGTRT---------Y---Q-----------GFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSID 619 (1120)
Q Consensus 564 ~~~~s~~g~~~---------~---~-----------~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 619 (1120)
.+++++++... + . .........++++| ++++++++ ++.|.+||+.+++.+..+.
T Consensus 215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~ 292 (349)
T 1jmx_B 215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN 292 (349)
T ss_dssp EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc
Confidence 45555544210 0 0 00122456778899 99998888 8899999999999888876
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhc
Q 001224 620 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663 (1120)
Q Consensus 620 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 663 (1120)
... .+.+++|+|+|++|++++.++.|.+||..++ +.+..+
T Consensus 293 ~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~ 332 (349)
T 1jmx_B 293 LDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI 332 (349)
T ss_dssp CSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred CCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence 433 3678999999999988888999999999887 444433
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=4.7e-16 Score=174.07 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=156.6
Q ss_pred CCccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeee-ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ce
Q 001224 825 EAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DE 899 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~ 899 (1120)
.....++++|||++++++. +++|.+||+.+++.+.. +.. . ....+.+.|++...+++.+.||.+.+|+... ++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 3466789999999998875 47899999999988877 552 2 2233667784557788889999999999865 55
Q ss_pred eeE------eecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccC------CCCCCCCCCcEEEEc
Q 001224 900 VKS------KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT------GRTPTAQSDTRVQFH 967 (1120)
Q Consensus 900 ~~~------~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~fs 967 (1120)
... .+..+..++ .+.+++++..++..+.++.|.++|+............... +..+ .....++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~ 262 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLH 262 (361)
T ss_dssp EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEE
T ss_pred EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc--CCeeEEEEe
Confidence 441 222233332 3455788888888888999999999764322111111100 0000 123458999
Q ss_pred cCCcEEEEE-e-----------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCc--
Q 001224 968 QDQIHFLVV-H-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL-- 1033 (1120)
Q Consensus 968 pdg~~la~~-~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~-- 1033 (1120)
||++.+.++ . ...|.+||+.+++.+..+.. +. +.+++|+|||++|++++. +.|.|||..++
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l 337 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP 337 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSC
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc
Confidence 998888774 3 24899999999999998874 33 999999999999998886 99999999999
Q ss_pred ceeeeeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001224 1034 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1067 (1120)
Q Consensus 1034 ~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~ 1067 (1120)
+.+..+. +.| -.|..++++| ||.
T Consensus 338 ~~~~~i~-----~~G-----~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 338 KLLRTIE-----GAA-----EASLQVQFHP-VGG 360 (361)
T ss_dssp EEEEEET-----TSC-----SSEEEEEECC-CSC
T ss_pred eeeEEec-----cCC-----CCcEEEEecC-CCC
Confidence 8887764 112 3355789999 453
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=2.1e-16 Score=178.14 Aligned_cols=251 Identities=11% Similarity=0.026 Sum_probs=169.4
Q ss_pred ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccc-cCCCCCCCCCccEEEEccCC
Q 001224 758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKND 836 (1120)
Q Consensus 758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~-~~~~~~~~~~v~~l~~s~d~ 836 (1120)
..+..++|+|+|+++++++.+ .+.+|++.. +|.+... .... + ..+.+++++|||
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~---------------------~g~~~~~~~~~~--~-g~~~~~~~spdg 94 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKS---------------------PTEIVHEASHPI--G-GHPRANDADTNT 94 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEE---------------------TTEEEEEEEEEC--C-SSGGGGCTTSCC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECC---------------------CCCEEEeeEeec--C-CCCccEEECCCC
Confidence 457789999999988888877 899998741 1111100 0000 1 125568899999
Q ss_pred CE--EEEE--------------eCCcEEEEEcC-CCceeeeec----CCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEE
Q 001224 837 SY--VMSA--------------SGGKISLFNMM-TFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN 894 (1120)
Q Consensus 837 ~~--l~~~--------------sdg~i~vwd~~-~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd 894 (1120)
++ ++++ .++.+.+|++. +++....+. .+...+.+++|+| |+++|++++. ++.|++|+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~ 173 (365)
T 1jof_A 95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHR 173 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEE
Confidence 94 4444 46889999997 465544333 2456799999999 8888877653 67999999
Q ss_pred ee-cceee--Eeec--ccccceEEEEEccCCCEEEEEeC-CCCEEEEECCC--ccccc-ceeeeccCCCCCCCC------
Q 001224 895 VR-VDEVK--SKLK--GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG--WEKQK-NRFLQIPTGRTPTAQ------ 959 (1120)
Q Consensus 895 ~~-~~~~~--~~l~--~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~--~~~~~-~~~~~~~~~~~~~~~------ 959 (1120)
+. +++.. ..+. .|...+..++|+|||++|++++. ++.|.+|+++. ++... ...+...........
T Consensus 174 ~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (365)
T 1jof_A 174 KLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp ECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred ECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccc
Confidence 98 67643 3333 24567899999999999987765 68999998763 33211 111222221110001
Q ss_pred -CCcEEE-EccCCcEEEEE--eCC-----eEEEEEcC-Cceeeeccc-cCCCCCCeeEEEECC---CCcEEEEEEcC-Cc
Q 001224 960 -SDTRVQ-FHQDQIHFLVV--HET-----QLAIFETT-KLECVKQWV-PRESSAPITHATFSC---DSQLVYACFLD-AT 1024 (1120)
Q Consensus 960 -~i~~~~-fspdg~~la~~--~d~-----~v~i~d~~-~~~~~~~~~-~~~h~~~v~~l~~s~---dg~~l~s~~~D-g~ 1024 (1120)
.+..++ |+|||++|+++ .++ .|.+|++. +++...... ...+...+..++|+| ||++|++++.+ +.
T Consensus 254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~ 333 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW 333 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence 367899 99999998774 333 89999996 565443211 113345677899999 89999999875 89
Q ss_pred EEEEEcCCcc
Q 001224 1025 VCVFSAANLK 1034 (1120)
Q Consensus 1025 v~iwd~~~~~ 1034 (1120)
|.||+++...
T Consensus 334 v~v~~~~~~~ 343 (365)
T 1jof_A 334 LEIYRWKDEF 343 (365)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEEchhh
Confidence 9999998763
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=2.2e-15 Score=168.68 Aligned_cols=228 Identities=9% Similarity=0.012 Sum_probs=139.5
Q ss_pred CCCeEEEEE-----eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE----
Q 001224 375 VQQTLLLVG-----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY---- 445 (1120)
Q Consensus 375 dg~~lla~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---- 445 (1120)
++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|+++.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~ 72 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE 72 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence 455444443 2378999999999987653 2233444 899999999999986
Q ss_pred ------CCCeEEEEEccCCceeeeeeeecc---cccCeEEEEEcCCCCceEEEEec--CCCcEEEEECCCCceeEE-eec
Q 001224 446 ------SRHIVQIYSYHGGDEVRQHLEIDA---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYI-FEG 513 (1120)
Q Consensus 446 ------~dg~v~iwd~~~~~~~~~~~~l~~---h~~~V~~v~~s~d~~~~~l~s~s--~d~~i~vwd~~~~~~~~~-~~~ 513 (1120)
.++.|.+||..+++.+..+....+ +......++|+|||++ |+++. .+++|.+||+.+++.+.. +..
T Consensus 73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~--l~v~n~~~~~~v~v~d~~~~~~~~~~i~~ 150 (361)
T 2oiz_A 73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF--IVLQNASPATSIGIVDVAKGDYVEDVTAA 150 (361)
T ss_dssp TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE--EEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE--EEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence 367899999998887654332211 2245778999999995 44443 468999999999998887 653
Q ss_pred cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224 514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 593 (1120)
Q Consensus 514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~ 593 (1120)
. + ...+.+.+... ..+++.+.||.+.+|+........... +. ...+.+... . ..+..++++.
T Consensus 151 ~-~-~~~v~~~p~~~-~~~~~~~~dg~~~~v~~~~~g~~~~~~-~~----~~~~~~~~~---------~-~~~~~~~~g~ 212 (361)
T 2oiz_A 151 A-G-CWSVIPQPNRP-RSFMTICGDGGLLTINLGEDGKVASQS-RS----KQMFSVKDD---------P-IFIAPALDKD 212 (361)
T ss_dssp T-T-EEEEEECTTSS-SEEEEEETTSSEEEEEECTTSSEEEEE-EC----CCCSCTTTS---------C-BCSCCEECSS
T ss_pred C-C-cceeEEcCCCC-eeEEEECCCCcEEEEEECCCCcEeeec-cc----cceEcCCCC---------c-eEEEecccCC
Confidence 2 2 22234444432 577888899999999886533322100 00 001111111 0 1112234455
Q ss_pred EEEEEeCCCeEEEEECCCCce--eEEEecCC--------CCCCcCeEEEcCCCCEEEEEE
Q 001224 594 RFLAAGDDFSIKFWDMDSVQL--LTSIDADG--------GLPASPRIRFNKDGCLLAVST 643 (1120)
Q Consensus 594 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~ 643 (1120)
.++..+.++.|.++|+..+.. ...+.... .......++|+|+++.++++.
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~ 272 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM 272 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence 677777889999999875542 22222110 001122378888877776654
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=4.4e-16 Score=177.57 Aligned_cols=251 Identities=13% Similarity=0.016 Sum_probs=159.4
Q ss_pred eeeccCCCCceE-----EEEecCCCeEEEEEeCCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224 358 TRTLNQGSSPMS-----MDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 430 (1120)
Q Consensus 358 ~~~~~h~~~v~~-----v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 430 (1120)
..+-.|...... .+|||||++|++++..+| .|.+||+.+++... +..+|...+.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~ 84 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTF 84 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSS
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCcc
Confidence 333345544544 889999997555554477 48888998887654 3455666666
Q ss_pred EEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEE--EcCCCCceEEEE------------------
Q 001224 431 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT------------------ 490 (1120)
Q Consensus 431 ~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~d~~~~~l~s------------------ 490 (1120)
.++|||||++|+.++.++.|++||+.+++... .+..+...+.... ++++++ +++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence 78899999999999999999999999987543 2334444454444 489998 3442
Q ss_pred ----ecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecC------CeEEEEecCCCCCceeeeCCC-
Q 001224 491 ----CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG- 559 (1120)
Q Consensus 491 ----~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~- 559 (1120)
.+.+..|.+||+.+++.. .+..+...+..+.|+|. +|..|+....+ ..|.++|....... .+..+.
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~ 236 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAE 236 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCT
T ss_pred hhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCC
Confidence 234578999999998754 44456677888888651 55777776653 36777776654332 222222
Q ss_pred -CceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe-CC----CeEEEEECCCCceeEEEecCC--CC-CCcCeE
Q 001224 560 -RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DD----FSIKFWDMDSVQLLTSIDADG--GL-PASPRI 630 (1120)
Q Consensus 560 -~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~~~~~~--~~-~~v~~~ 630 (1120)
..+....|+|||+ .|+..+ .+ +.|++||+.+++......... +. .....+
T Consensus 237 ~~~~~~~~~spdg~---------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 295 (388)
T 3pe7_A 237 GESCTHEFWVPDGS---------------------ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGS 295 (388)
T ss_dssp TEEEEEEEECTTSS---------------------CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS
T ss_pred CcccccceECCCCC---------------------EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCC
Confidence 1344555555554 454433 22 249999999987543322221 00 012335
Q ss_pred EEcCCCCEEEEE---------ECCCcEEEEEccCc
Q 001224 631 RFNKDGCLLAVS---------TNDNGIKILATSDG 656 (1120)
Q Consensus 631 ~~s~~~~~l~~~---------~~dg~i~iwd~~~~ 656 (1120)
+|+|||+.|+.. ..+..|++||+.++
T Consensus 296 ~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 296 LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEEEEECCC------------CCCCEEEEEETTTT
T ss_pred eEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 899999988754 34568888988765
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=6.5e-16 Score=176.13 Aligned_cols=207 Identities=10% Similarity=0.034 Sum_probs=138.7
Q ss_pred ccCCCCceEE-----EEEcCCCCeEEEEEC-CC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC
Q 001224 422 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 493 (1120)
Q Consensus 422 l~~h~~~V~~-----l~~spdg~~las~~~-dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~ 493 (1120)
+..|...+.. .+|||||++|+.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5556655555 899999999999987 66 48888999887554 3345655666788999999 6888888
Q ss_pred CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe----------------------cCCeEEEEecCCCCC
Q 001224 494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------------------LDGKIKAWLYDNLGS 551 (1120)
Q Consensus 494 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~ 551 (1120)
++.|++||+.+++....+..+...+....|..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877777666666555554467777776432 346788898887543
Q ss_pred ceeeeCCCCceeEEEEcC-CCCeEEecccccceeEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeEEEecCCCC
Q 001224 552 RVDYEAPGRWCTTMAYSA-DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGL 624 (1120)
Q Consensus 552 ~~~~~~~~~~v~~~~~s~-~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~ 624 (1120)
..+..+...+..+.|+| || +.|+.+.. ...|.++|..++.. ..+..+...
T Consensus 181 -~~l~~~~~~~~~~~~sp~dg---------------------~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~ 237 (388)
T 3pe7_A 181 -TVILQENQWLGHPIYRPYDD---------------------STVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEG 237 (388)
T ss_dssp -EEEEEESSCEEEEEEETTEE---------------------EEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTT
T ss_pred -EEeecCCccccccEECCCCC---------------------CEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCC
Confidence 22223333344555555 44 45665554 33788888876544 333322211
Q ss_pred CCcCeEEEcCCCCEEEEEEC-CC----cEEEEEccCc
Q 001224 625 PASPRIRFNKDGCLLAVSTN-DN----GIKILATSDG 656 (1120)
Q Consensus 625 ~~v~~~~~s~~~~~l~~~~~-dg----~i~iwd~~~~ 656 (1120)
..+..++|+|||+.|+..+. ++ .|++||+.++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 24667899999997765443 22 2777777655
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=6.7e-15 Score=162.89 Aligned_cols=251 Identities=14% Similarity=0.073 Sum_probs=184.6
Q ss_pred CCCccEEEEccCCCEEEEEe-C------------------------CcEEEEEcCCCceeeeec-CCCCCeEEEEEecCC
Q 001224 824 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD 877 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d 877 (1120)
-..+.+++++++|+++++.. + ++|.+||..+++.+..+. .+......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998877 4 379999999888876664 3445789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEeecce-eeEee---------cccccceEEEEEcc-CCCEEEEEe-CCCCEEEEECCCcccccc
Q 001224 878 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN 945 (1120)
Q Consensus 878 ~~~lasg~~dg~v~vwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~s-~Dg~v~iWd~~~~~~~~~ 945 (1120)
++++++...++.|++|+..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+.+. +....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8888888889999999975432 45555 34556789999999 788888886 689999999543 22111
Q ss_pred eeeeccCCC---CCCCCCCcEEEEccC-CcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEE--
Q 001224 946 RFLQIPTGR---TPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-- 1018 (1120)
Q Consensus 946 ~~~~~~~~~---~~~~~~i~~~~fspd-g~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-- 1018 (1120)
......+. .........++++|+ |.++++. .++.|++|+..+++.+..+....+...+.+++|+| +..+++
T Consensus 181 -~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 181 -WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp -ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred -eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 00000000 001124689999999 6666664 77899999999899988887666778899999999 433333
Q ss_pred -----EEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224 1019 -----CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1019 -----~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
...+..|++||..+++.+..+... .+ ..-.|..++++| |++++++...++.|++|++...
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 334458999999999999876411 11 112355899999 5788999999999999998754
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.7e-14 Score=159.57 Aligned_cols=250 Identities=12% Similarity=0.119 Sum_probs=183.2
Q ss_pred CCceEEEEecCCCeEEEEEeCC------------------------CcEEEEecCCCceeEeeceeeeccCCCCcccccc
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA 420 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (1120)
+.|.+|+++|+|+ ++++...+ ++|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 6799999999998 57777766 4799999988886542
Q ss_pred cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCc-eeeeeeee---------cccccCeEEEEEcC-CCCceEEE
Q 001224 421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI---------DAHVGGVNDIAFSH-PNKQLCVI 489 (1120)
Q Consensus 421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~-~~~~~~~l---------~~h~~~V~~v~~s~-d~~~~~l~ 489 (1120)
...++-.....++++|+|+++++...++.|++|+..+.. .+. .+ .++......|+|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 122455678999999999998888889999999987652 222 23 34455789999999 676 677
Q ss_pred Eec-CCCcEEEEECCCCceeEEeecc----------ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee--
Q 001224 490 TCG-DDKTIKVWDATNGAKQYIFEGH----------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-- 556 (1120)
Q Consensus 490 s~s-~d~~i~vwd~~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-- 556 (1120)
+.+ .++.|++|| .+|..+..+... ......+++.++ .+.++++...++.|++|+..+++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 778887777432 234788888643 25788888889999999998666555543
Q ss_pred CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec-CCCCCCcCeEEEcCC
Q 001224 557 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKD 635 (1120)
Q Consensus 557 ~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~ 635 (1120)
.....+..++++| +. .+..+++.+++...+..|++||..+++.+..+.. ..+...+..++++|+
T Consensus 238 ~~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d 302 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED 302 (329)
T ss_dssp TTTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred ccCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence 2344566666666 32 1112333344445667999999999998888742 223446789999999
Q ss_pred CCEEEEEECCCcEEEEEccC
Q 001224 636 GCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 636 ~~~l~~~~~dg~i~iwd~~~ 655 (1120)
|.++++...++.|++|++..
T Consensus 303 G~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 303 GTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SEEEEEESSSCCEEEEEEEE
T ss_pred CCEEEEECCCCEEEEEeCCc
Confidence 98888888899999999754
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.66 E-value=5.6e-14 Score=152.32 Aligned_cols=243 Identities=11% Similarity=0.117 Sum_probs=176.6
Q ss_pred CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec------CCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEE
Q 001224 823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM------PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN 894 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~------~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd 894 (1120)
+-..+.+++++++++++++.. ++.|.+||.. ++.+..+. ++...+..+++++.+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456688999999999888776 7899999987 56655553 234568999995327777776643 88999999
Q ss_pred eecceeeEeec-ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEE
Q 001224 895 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 973 (1120)
Q Consensus 895 ~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~l 973 (1120)
.+++.+..+. .+...+.+++++++|+++++...++.|.+|+.+.. .. ..+.. .++ ...+..++++++|+++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~--~~~~~-~~~---~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VL--HKFGC-SKH---LEFPNGVVVNDKQEIF 178 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EE--EEEEC-TTT---CSSEEEEEECSSSEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EE--EEeCC-CCc---cCCcEEEEECCCCCEE
Confidence 5677666664 34567899999999998888888899999996542 11 11111 111 1256899999999977
Q ss_pred EEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC-cEEEEEcCCcceeeeeCCCcccCCCCCC
Q 001224 974 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1051 (1120)
Q Consensus 974 a~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-~v~iwd~~~~~~~~~~~~~~~~~~g~~~ 1051 (1120)
++. .++.|++||.. ++.+..+...++...+..++++++|+++++...++ .|.+||. +++.+..+.. ..
T Consensus 179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~----~~---- 248 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES----KV---- 248 (286)
T ss_dssp EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE----SS----
T ss_pred EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc----cC----
Confidence 774 68899999974 55555554334446789999999999888887776 9999995 5666665541 11
Q ss_pred CCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224 1052 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1052 ~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
....+.+++++| +++++++ +.|+.|++|++...
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 112355899999 5776666 67999999997653
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=2.5e-13 Score=159.38 Aligned_cols=332 Identities=12% Similarity=0.119 Sum_probs=218.5
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc--Ccchhhhhcccccccc
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAYDA 670 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~ 670 (1120)
..+++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. ++ +....+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~------ 237 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIK------ 237 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEE------
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEe------
Confidence 356777789999999999999998887432 35689999999999999999999999985 33 1111110
Q ss_pred cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeec
Q 001224 671 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 750 (1120)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 750 (1120)
T Consensus 238 -------------------------------------------------------------------------------- 237 (567)
T 1qks_A 238 -------------------------------------------------------------------------------- 237 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccccEEEEEEc----CCCceEEEecc-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCC-C
Q 001224 751 LPENLRATKISRLIFT----NSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-E 824 (1120)
Q Consensus 751 ~~~~~~~~~i~~l~~s----~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~-~ 824 (1120)
.......++|+ |||++++++.. ++.+.++|..+.+ .+....+.-.... +. ..| .
T Consensus 238 -----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~------~~~~i~~~~~~~~-~~--------~~~p~ 297 (567)
T 1qks_A 238 -----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE------PKKIQSTRGMTYD-EQ--------EYHPE 297 (567)
T ss_dssp -----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC------EEEEEECCEECTT-TC--------CEESC
T ss_pred -----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc------EEEEEeccccccc-cc--------cccCC
Confidence 01234688999 69998887766 4888888753211 1110000000000 00 001 2
Q ss_pred CCccEEEEccCCCEEEEEe--CCcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEeecce
Q 001224 825 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE 899 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~ 899 (1120)
..+..+..++++..++... +|+|.++|..+.+.+ ..+. .......+.|+| ++++++++. .++.|.++|+.+++
T Consensus 298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCc
Confidence 2677888999877666554 699999998865432 2222 334567889999 788776655 57899999999998
Q ss_pred eeEeecc-----cccceEEEEEccCCCE-EEEEe-CCCCEEEEECCCcccc--cceeeeccCCCCCCCCCCcEEEEccCC
Q 001224 900 VKSKLKG-----HSKRITGLAFSHALNV-LVSSG-ADSQLCVWSSDGWEKQ--KNRFLQIPTGRTPTAQSDTRVQFHQDQ 970 (1120)
Q Consensus 900 ~~~~l~~-----h~~~V~~l~~s~d~~~-l~s~s-~Dg~v~iWd~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~fspdg 970 (1120)
++..+.- |.+.-..+ ++|++.. .+++. .+++|.++|.++.+.. ....++...... ..-..+.++|++
T Consensus 376 l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~ 451 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---GGSLFIKTHPNS 451 (567)
T ss_dssp EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEECCTTC
T ss_pred EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC---CCCEEEEeCCCC
Confidence 7766643 43222222 5787544 44543 4689999999873311 012223322211 123567899999
Q ss_pred cEEEEEe--------CCeEEEEEcCCc---------eeeec--cc-cCCCCCCeeEEEECCCCcEEEEEE-----cCCcE
Q 001224 971 IHFLVVH--------ETQLAIFETTKL---------ECVKQ--WV-PRESSAPITHATFSCDSQLVYACF-----LDATV 1025 (1120)
Q Consensus 971 ~~la~~~--------d~~v~i~d~~~~---------~~~~~--~~-~~~h~~~v~~l~~s~dg~~l~s~~-----~Dg~v 1025 (1120)
+++.+.. .+.|.+||+.+. +.+.. |. .......+..+.|++||+++..+. .++.|
T Consensus 452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i 531 (567)
T 1qks_A 452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESAL 531 (567)
T ss_dssp SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEE
T ss_pred CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcE
Confidence 9999854 359999999877 22211 11 111246789999999999877663 37999
Q ss_pred EEEEcCCcceeeeeC
Q 001224 1026 CVFSAANLKLRCRIN 1040 (1120)
Q Consensus 1026 ~iwd~~~~~~~~~~~ 1040 (1120)
.|+|..+++++..++
T Consensus 532 ~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 532 VVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEECCCceEEEEeC
Confidence 999999999998887
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=6.4e-15 Score=168.38 Aligned_cols=162 Identities=9% Similarity=0.010 Sum_probs=108.7
Q ss_pred ceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeeeeeeecccccC-eEEEEEcCCCCceEEEEecCCCcEEEEECC
Q 001224 428 SVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDAT 503 (1120)
Q Consensus 428 ~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~-V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~ 503 (1120)
.+.+++|||||++|+.+... ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|++||+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence 37888999999999887653 368888999887443 3333333 33488999999 68888888899999999
Q ss_pred CCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224 504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 583 (1120)
Q Consensus 504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i 583 (1120)
+++.......+.. | .++|..|+..+.++...+|.. ...++|+++
T Consensus 111 ~~~~~~~~~~~~~------~--~~~g~~l~~~~~~~~~~~~~~-----------------~~~~spdg~----------- 154 (396)
T 3c5m_A 111 TLEEQVIYTVDEE------W--KGYGTWVANSDCTKLVGIEIL-----------------KRDWQPLTS----------- 154 (396)
T ss_dssp TCCEEEEEECCTT------E--EEEEEEEECTTSSEEEEEEEE-----------------GGGCCCCCS-----------
T ss_pred CCCcEEEEecccc------c--CCCCCEEEeccCCcccccccc-----------------ccccCCCCc-----------
Confidence 8887665554433 2 123456665555555555531 223455554
Q ss_pred eEEEEcCCCCEEEEE-----eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001224 584 GVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 644 (1120)
Q Consensus 584 ~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 644 (1120)
.++.+ ..+..|++||+.+++....... ...+..+.|+| +++.|+..+.
T Consensus 155 ----------~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~ 208 (396)
T 3c5m_A 155 ----------WEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHE 208 (396)
T ss_dssp ----------HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEEC
T ss_pred ----------ceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEec
Confidence 33332 3567899999998876655532 23477899999 7887776654
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=6.5e-13 Score=155.88 Aligned_cols=333 Identities=14% Similarity=0.088 Sum_probs=211.0
Q ss_pred ceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecC--CCCCceeeeCCCCce
Q 001224 485 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEAPGRWC 562 (1120)
Q Consensus 485 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v 562 (1120)
.+++++...++.|.++|..+++.+.++... ..+..+.++ ++|+++++++.|+.|.+||+. +.+....+.. +...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~S--pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P 242 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLS--ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA 242 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEEC--CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence 337888899999999999999999888743 345677764 567899999999999999995 4444433332 2233
Q ss_pred eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEEecCCC---------CCCcCeEEE
Q 001224 563 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------LPASPRIRF 632 (1120)
Q Consensus 563 ~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~ 632 (1120)
..+++++-. .|+|++++++. .++.|.++|..+.+.+..+...+. ...+..+..
T Consensus 243 ~~ia~s~~~-----------------~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 243 RSIETSKME-----------------GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp EEEEECCST-----------------TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred ceeEEcccc-----------------CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence 444555100 03445666654 579999999999998887763221 012344555
Q ss_pred cCCCCEEEEE-ECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCC
Q 001224 633 NKDGCLLAVS-TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 711 (1120)
Q Consensus 633 s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1120)
++++..++.. ..+|.|.++|..+..
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~------------------------------------------------------ 331 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLN------------------------------------------------------ 331 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSS------------------------------------------------------
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCc------------------------------------------------------
Confidence 5544333222 223444444432210
Q ss_pred CcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeeccccc
Q 001224 712 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER 791 (1120)
Q Consensus 712 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 791 (1120)
.+.+..+
T Consensus 332 --------------------------------------------------------------------~~~v~~i----- 338 (567)
T 1qks_A 332 --------------------------------------------------------------------NLKTTEI----- 338 (567)
T ss_dssp --------------------------------------------------------------------EEEEEEE-----
T ss_pred --------------------------------------------------------------------cceeeee-----
Confidence 0000000
Q ss_pred CCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecC-----C
Q 001224 792 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP-----P 864 (1120)
Q Consensus 792 ~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-----~ 864 (1120)
. .......+.|+|+|++++++. +++|.++|+.+++.+..+.. |
T Consensus 339 -----------------~-------------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Ph 388 (567)
T 1qks_A 339 -----------------S-------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH 388 (567)
T ss_dssp -----------------E-------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC
T ss_pred -----------------e-------------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCC
Confidence 0 112244678899999888776 68899999999887766543 3
Q ss_pred CCCeEEEEEecCCCcEEEEEe-CCCcEEEEEeec-------ceeeEeecccccceEEEEEccCCCEEEEEeC-------C
Q 001224 865 PPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-------D 929 (1120)
Q Consensus 865 ~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-------D 929 (1120)
.+.-..+ ++|+.+.+++++. .++.|.++|..+ .+.++++......-..+..+|++++|..... .
T Consensus 389 pg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~ 467 (567)
T 1qks_A 389 PGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEIS 467 (567)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred Cccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccC
Confidence 3222222 5783355555553 468999999988 6778888765444355789999999887653 3
Q ss_pred CCEEEEECCCccc---c-cceeeecc--CCCCCCCCCCcEEEEccCCcEEEEE-e-----CCeEEEEEcCCceeeeccc
Q 001224 930 SQLCVWSSDGWEK---Q-KNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV-H-----ETQLAIFETTKLECVKQWV 996 (1120)
Q Consensus 930 g~v~iWd~~~~~~---~-~~~~~~~~--~~~~~~~~~i~~~~fspdg~~la~~-~-----d~~v~i~d~~~~~~~~~~~ 996 (1120)
.+|.|+|+.+.+. . ....+... .+.......+..+.|+|+|+++.++ . ++.|.|+|..+++.+..+.
T Consensus 468 ~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 468 GSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp TCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 5899999987511 1 11222210 0111111367899999999988774 2 6899999999999887765
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=5.2e-15 Score=169.13 Aligned_cols=239 Identities=13% Similarity=-0.010 Sum_probs=152.8
Q ss_pred CceEEEEecCCCeEEEEEeCCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224 366 SPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 443 (1120)
.+.+++|||||++|+++...++ .|.+||+.+++... +..++......+.|||||++|+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~ 97 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFY 97 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEE
Confidence 3788999999998666655444 68888998876543 12222223344889999999999
Q ss_pred EECCCeEEEEEccCCceeeeeeeecccccCeEE-------------------EEEcCCCCceEEEEe-----cCCCcEEE
Q 001224 444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKV 499 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------v~~s~d~~~~~l~s~-----s~d~~i~v 499 (1120)
++.++.|.+||+.+++... ....+...... ++|+|+++. ++.+ ..+..|.+
T Consensus 98 ~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 98 VKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp EETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEE
T ss_pred EEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEE
Confidence 9999999999999887443 12223332222 356888884 3333 45678999
Q ss_pred EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecC------CeEEEEecCCCCCceeeeCC-CCceeEEEEcCCCC
Q 001224 500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGT 572 (1120)
Q Consensus 500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~ 572 (1120)
||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+............ ...+..+.|+|+|
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg- 249 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG- 249 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS-
T ss_pred EECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC-
Confidence 999988765544 46677888888652 34556655543 35778887654322211111 1134444555554
Q ss_pred eEEecccccceeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEEC--
Q 001224 573 RTYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN-- 644 (1120)
Q Consensus 573 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-- 644 (1120)
++|+.++.+ +.|++||+.+++......... .. +.|+| ||+++++++.
T Consensus 250 --------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 250 --------------------SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp --------------------SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC
T ss_pred --------------------CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCc
Confidence 456555433 459999999887654433221 22 89999 9998887652
Q ss_pred --------------CCcEEEEEccCc
Q 001224 645 --------------DNGIKILATSDG 656 (1120)
Q Consensus 645 --------------dg~i~iwd~~~~ 656 (1120)
++.|++||+.++
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ----------CCCCCCEEEEEETTTT
T ss_pred ceeeccccccccCCCCcEEEEecccC
Confidence 356778877655
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=2e-14 Score=176.49 Aligned_cols=335 Identities=9% Similarity=0.017 Sum_probs=197.2
Q ss_pred eecccccCeEEEEEcCCCCceEEEEe--cCCCcEEEEECCCCceeEEeeccccCeE---------EEeeccCCCceE-EE
Q 001224 466 EIDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IF 533 (1120)
Q Consensus 466 ~l~~h~~~V~~v~~s~d~~~~~l~s~--s~d~~i~vwd~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~ 533 (1120)
.+.+|...|..++|++++- ++++. +.++...||....+.....+..|...+. ...|+.++||+. |+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3667899999999997654 67777 6688999999766666777777766655 455553467777 66
Q ss_pred EEec-CCeEEEEecC--CCCCceeeeC-----CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC----
Q 001224 534 STAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---- 601 (1120)
Q Consensus 534 s~~~-dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---- 601 (1120)
..+. +..|.+|++. ..+....+.. +...+.. ++|+|||+.|+.++.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~---------------------~~~spDg~~l~~~~~~~~~~ 154 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWAD---------------------PVLLPERGEVWCMAEEFTGE 154 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEE---------------------EEEETTTTEEEEEEEEECSS
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccC---------------------cEECCCCCEEEEEEecccCC
Confidence 5543 4566666654 1033333332 2233444 4455555577777765
Q ss_pred ------CeEEEEECCC------CceeEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCC--------cEEEEEcc-Ccchh
Q 001224 602 ------FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIRL 659 (1120)
Q Consensus 602 ------g~i~iwd~~~------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~-~~~~~ 659 (1120)
..|++||+.+ ++.. .+. .+ ...+..++|||||++|+.++.++ .|++||+. ++. .
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-~ 230 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-F 230 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-E
T ss_pred CCCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-c
Confidence 5899999988 5543 333 22 23577899999999999877553 57777765 230 0
Q ss_pred hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224 660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 739 (1120)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 739 (1120)
T Consensus 231 -------------------------------------------------------------------------------- 230 (662)
T 3azo_A 231 -------------------------------------------------------------------------------- 230 (662)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224 740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 819 (1120)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 819 (1120)
.....+. ..+...+..+.|+|||+.++++..++...||.++ ..++..... ..
T Consensus 231 ----~~~~~l~---~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l-~~ 282 (662)
T 3azo_A 231 ----ADTRTLL---GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQL-CR 282 (662)
T ss_dssp ----EEEEEEE---EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEES-SC
T ss_pred ----cccEEeC---CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeec-cc
Confidence 0000000 1134667889999999977777777755555432 122221110 00
Q ss_pred CC------CCCCCccEEEEccCCCEEEEEeCCcEEEE--EcCCCceeeeecCCCCCeEEE-EEecCCCcEEEEEeCCCc-
Q 001224 820 DS------NPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDSS- 889 (1120)
Q Consensus 820 ~~------~~~~~v~~l~~s~d~~~l~~~sdg~i~vw--d~~~~~~~~~~~~~~~~i~~l-~~sp~d~~~lasg~~dg~- 889 (1120)
.. .-.-.+.+++|++++++++++..+.++|| |+.+++ +..+..+...+..+ +++. +.-++++++.+..
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAY 360 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCC
Confidence 00 00111457899999999888866777888 655554 67777777777777 5543 3334444555544
Q ss_pred -EEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224 890 -IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 937 (1120)
Q Consensus 890 -v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~ 937 (1120)
|++||+.+++.......|...+....+++.....+.+..+..+..|-+
T Consensus 361 ~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 361 EVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred EEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 555555566654433445444444444433333444333345655543
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=2.2e-13 Score=147.58 Aligned_cols=248 Identities=14% Similarity=0.162 Sum_probs=172.9
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE-cCCCCeE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLF 441 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~-spdg~~l 441 (1120)
+-..+.+++++|+|+ ++++...++.|.+||.. ++.+..... . ....+|...+..+++ .++|+++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-----~--------~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-----C--------GKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-----B--------SSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-----c--------CCCcccccCceEEEEEcCCCeEE
Confidence 456789999999998 68888889999999987 544432100 0 001245567899999 4777777
Q ss_pred EEEEC-CCeEEEEEccCCceeeeeeeec-ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee--ccccC
Q 001224 442 GVAYS-RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAP 517 (1120)
Q Consensus 442 as~~~-dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~h~~~ 517 (1120)
++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||. +++.+..+. ++...
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEF 165 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCSS
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCC
Confidence 76644 88999999 4555443 232 3446789999999998 6788788899999995 566666664 34556
Q ss_pred eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224 518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 597 (1120)
Q Consensus 518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~ 597 (1120)
+..+++++ +|.++++...++.|++||... +....+..... ......++++++|+.+++
T Consensus 166 p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v~ 223 (286)
T 1q7f_A 166 PNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILIA 223 (286)
T ss_dssp EEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEEE
T ss_pred cEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEEE
Confidence 88888754 567777777899999999743 22222221110 013345666666667777
Q ss_pred EeCCC-eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 598 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 598 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
...++ .|.+||. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+....
T Consensus 224 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 224 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 77775 9999995 5667777765444334678999999987766 67999999987543
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.63 E-value=1.7e-10 Score=143.98 Aligned_cols=554 Identities=9% Similarity=0.088 Sum_probs=312.4
Q ss_pred CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 443 (1120)
...|.++...++|. |-.|+.+ -+..||..+++...- ... .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR--VWIGTRD-GLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC--EEEEeCC-chheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEE
Confidence 46799999999998 3345554 489999887653321 000 0000012889999888876664
Q ss_pred EECCCeEEEEEccCCceeeeeeeeccc-ccC-eEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEE
Q 001224 444 AYSRHIVQIYSYHGGDEVRQHLEIDAH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYS 520 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~-V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~ 520 (1120)
. . +.|..||..+++... . ..++ ... |.++...+++. +..++.++.|..||..+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 448899987765322 1 0111 123 88998888887 344555556889998777654321 123456777
Q ss_pred EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 600 (1120)
Q Consensus 521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 600 (1120)
+... .++. |..++.++-+..||..+.... .+..... .+. ......+.++..+++|. |..|+.
T Consensus 220 i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~-~~~~~~~-------~~~------~l~~~~i~~i~~d~~g~-lWigt~ 281 (795)
T 4a2l_A 220 ILQQ--SPTR-IWVATEGAGLFLINPKTKEIK-NYLHSPS-------NPK------SISSNYIRSLAMDSQNR-LWIGTF 281 (795)
T ss_dssp EEEE--ETTE-EEEEEBSSCEEEEETTTTEEE-EECCCTT-------CTT------SCSCSBEEEEEECTTSC-EEEEES
T ss_pred EEEc--CCCC-EEEEECCCCeEEEeCCCCeEE-EeecCCC-------Ccc------ccCCCeEEEEEEcCCCC-EEEEeC
Confidence 7653 3444 444554445888887653221 1111000 000 00112344555555554 555555
Q ss_pred CCeEEEEECCCCceeEEEecC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224 601 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 675 (1120)
Q Consensus 601 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 675 (1120)
+ -|.+||..++......... -....|.++...++|.+. +|+.++.|..|+..++ . +..+.....
T Consensus 282 ~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~-~-~~~~~~~~~------- 350 (795)
T 4a2l_A 282 N-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRN-R-FKNIRNIPY------- 350 (795)
T ss_dssp S-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGG-S-SEEECCCTT-------
T ss_pred C-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcc-c-ceEEcCCCC-------
Confidence 5 5889998877644332111 012458889899888755 5777778888875433 1 111100000
Q ss_pred CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcc
Q 001224 676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 755 (1120)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 755 (1120)
+...
T Consensus 351 ----------------------------------------------------------------------------~~~l 354 (795)
T 4a2l_A 351 ----------------------------------------------------------------------------KNSL 354 (795)
T ss_dssp ----------------------------------------------------------------------------SSSC
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 0000
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
....|.++...++|. |-.++.++-+..|+.....+ ..+....+.. ...-....|.+++..++
T Consensus 355 ~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~~-----~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 355 SDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDES-----ARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp SCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC-----------CCSCSCEEEEEEETT
T ss_pred CCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCCc-----ccCCCCccEEEEEEcCC
Confidence 235688888888887 55566665666665432111 0010000000 00002457889999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeeec----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec-----
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK----- 905 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~----- 905 (1120)
|+.|.+|+ ++.|.+||..+++...... .....|.++...+ ++++.+ |+. +-|.+||..+++......
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTCC
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEEcccccccc
Confidence 98455555 6789999988765433221 1245689999888 666555 444 458889987765433221
Q ss_pred -ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEE
Q 001224 906 -GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 984 (1120)
Q Consensus 906 -~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~ 984 (1120)
-+...|.++...++|.+.+... + -|..|+..+++. ...............|.++...++|.+.+.+.. .+..|
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~ 567 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI---QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCF 567 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE---EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEE
T ss_pred ccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE---EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeE
Confidence 1236789999999888776554 4 488898876432 111000000011136788999999987666544 78899
Q ss_pred EcCCceeeeccccCC-CCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecC
Q 001224 985 ETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1063 (1120)
Q Consensus 985 d~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p 1063 (1120)
|..+++....-...+ ....|.++...++|.+.+++ ++-|..|+..+++.. .+....-++. .....-++...+
T Consensus 568 d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~----~~f~~~~~~~~~ 640 (795)
T 4a2l_A 568 NEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQS----NQFNTASYCRTS 640 (795)
T ss_dssp ETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSC----SCEEEEEEEECT
T ss_pred CCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCcc----ccCccCceeECC
Confidence 988775543211112 14568999999999876655 455778898877644 3332222221 112122455555
Q ss_pred CCCCEEEEEeCCCcEEEEecCCC
Q 001224 1064 QEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1064 ~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
+| .|..|+.+| +..+++..-
T Consensus 641 -~G-~l~~g~~~G-l~~~~p~~~ 660 (795)
T 4a2l_A 641 -VG-QMYFGGING-ITTFRPELL 660 (795)
T ss_dssp -TS-CEEEEETTE-EEEECGGGC
T ss_pred -CC-eEEEecCCc-eEEEcHHHc
Confidence 45 455566566 566676543
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.63 E-value=2.7e-14 Score=175.31 Aligned_cols=245 Identities=9% Similarity=-0.025 Sum_probs=160.4
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEE--eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE-----
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN----- 430 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~----- 430 (1120)
..+.+|...|..++|++++-+ ++.+ +.++...||....+..... +..|...|.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~ 76 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE 76 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred HHHhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence 345568999999999988653 5555 4578999999644433321 444555555
Q ss_pred ----EEEEc--CCCCe-EEEEEC-CCeEEEEEcc--C-Cceeeeeeeecc-----cccCeEEEEEcCCCCceEEEEecCC
Q 001224 431 ----RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD 494 (1120)
Q Consensus 431 ----~l~~s--pdg~~-las~~~-dg~v~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~s~d 494 (1120)
..+|+ |||++ |+.++. +..|.+|++. + +. .+ .+.. |...+.+++|+|||+ .|++++.|
T Consensus 77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~ 150 (662)
T 3azo_A 77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE 150 (662)
T ss_dssp TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence 56665 99999 777654 4556666665 3 43 22 3444 677899999999999 57766665
Q ss_pred ----------CcEEEEECCC------CceeEEee-ccccCeEEEeeccCCCceEEEEEecC--------CeEEEEecCC-
Q 001224 495 ----------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD--------GKIKAWLYDN- 548 (1120)
Q Consensus 495 ----------~~i~vwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~- 548 (1120)
..|++||+.+ ++. ..+. .+...+..++|+ +||++|+.++.+ ..|.+||+..
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 5899999987 554 4555 555667667774 567888877755 3799999873
Q ss_pred CC--Cceee-eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEEecCCC
Q 001224 549 LG--SRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGG 623 (1120)
Q Consensus 549 ~~--~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~ 623 (1120)
+. ....+ ..+.. .+..+.|+|||+.+++++.++ .|++||+.+++.......+..
T Consensus 228 g~~~~~~~l~~~~~~---------------------~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 286 (662)
T 3azo_A 228 GRFADTRTLLGGPEE---------------------AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE 286 (662)
T ss_dssp SCEEEEEEEEEETTB---------------------CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB
T ss_pred CcccccEEeCCCCCc---------------------eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc
Confidence 31 11111 11222 344555666666677777777 677777767765443332221
Q ss_pred C------CCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224 624 L------PASPRIRFNKDGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 624 ~------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 653 (1120)
. ..+.+++|+|++++++++.. +.+++|.+
T Consensus 287 ~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 287 FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 1 01467888899999888888 88888854
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.60 E-value=3.9e-10 Score=140.79 Aligned_cols=545 Identities=10% Similarity=0.075 Sum_probs=314.7
Q ss_pred CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 443 (1120)
...|++|.-.++|- |-.|+.+| +..||-.+ . +.+....... ..-....|.+|...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~---f-----~~~~~~~~~~------~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA---F-----TVYQHNEDDP------NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSSC---E-----EEECCCTTCT------TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCCc---e-----EEEeCCCCCC------CcccccceeEEEECCCCCEEE-
Confidence 46799999999997 44666666 56666432 1 1121100000 001235799999999987655
Q ss_pred EECCCeEEEEEccCCceeeeeeeecccc----cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc-ccC-
Q 001224 444 AYSRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP- 517 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h-~~~- 517 (1120)
|+.+| +..||..+++... +.... ..|.++...++|. +.+ ++. +.|.+||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 8999988765322 22111 1288999888887 344 333 45889998776543211111 123
Q ss_pred eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
|.++... .++. |..++.++.|..|+..+....... ..... .+..+..++++. +.
T Consensus 175 i~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~---------------------~i~~i~~d~~g~-lw 229 (795)
T 4a2l_A 175 IASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTK---------------------QIQAILQQSPTR-IW 229 (795)
T ss_dssp CEEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CC---------------------CEEEEEEEETTE-EE
T ss_pred eEEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCC---------------------eeEEEEEcCCCC-EE
Confidence 7777653 3444 444665556888887654322110 00112 334444444443 55
Q ss_pred EEeCCCeEEEEECCCCceeEEEecC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccccccc
Q 001224 597 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 671 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 671 (1120)
.++.++.|.+||..+++........ -....|.++...++|.+.+ |+.+ .|.+|+..++ .. ..+.....
T Consensus 230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~-~~-~~~~~~~~--- 302 (795)
T 4a2l_A 230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTD-SF-ASYSSNPV--- 302 (795)
T ss_dssp EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTT-EE-EEECCCTT---
T ss_pred EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCC-eE-EEEecCCC---
Confidence 5665555899998876544332211 0124588888888887665 4454 6888886554 11 11100000
Q ss_pred ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeecc
Q 001224 672 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 751 (1120)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 751 (1120)
...
T Consensus 303 -------------------------------------------------------------------------~~~---- 305 (795)
T 4a2l_A 303 -------------------------------------------------------------------------ENG---- 305 (795)
T ss_dssp -------------------------------------------------------------------------STT----
T ss_pred -------------------------------------------------------------------------CCC----
Confidence 000
Q ss_pred CCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEE
Q 001224 752 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 831 (1120)
Q Consensus 752 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~ 831 (1120)
......|.++...++|. +-.++.++-+..|+.....+ ..+..... . ..-....|.+++
T Consensus 306 --~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~~~~---~----~~l~~~~V~~i~ 363 (795)
T 4a2l_A 306 --SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF------------KNIRNIPY---K----NSLSDNVVSCIV 363 (795)
T ss_dssp --SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS------------EEECCCTT---S----SSCSCSSEEEEE
T ss_pred --CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc------------eEEcCCCC---C----CCCCCCeeEEEE
Confidence 01335688899999888 55566666666666433211 11111100 0 001345689999
Q ss_pred EccCCCEEEEEeCCcEEEEEcCCCceeeeecC--------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224 832 LSKNDSYVMSASGGKISLFNMMTFKTMATFMP--------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 903 (1120)
Q Consensus 832 ~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~--------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 903 (1120)
..++|...+...++.|..|+..+++....... ....|.+++..+ ++++|.+|+.++-|.+||..+++...-
T Consensus 364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 99988766644467899999887654332211 235689999988 777466678777899999887764332
Q ss_pred ec----ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccC-CCCCCCCCCcEEEEccCCcEEEEEeC
Q 001224 904 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFHQDQIHFLVVHE 978 (1120)
Q Consensus 904 l~----~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~fspdg~~la~~~d 978 (1120)
.. .+...|.++...++|.+.+... +| +.+|+..+++.... .... ........|.++...++|.+.+.+.
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~i~~d~~g~lWigt~- 516 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTI---EKEKDGTPVVSKQITTLFRDSHKRLWIGGE- 516 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEEC---CBCTTCCBCCCCCEEEEEECTTCCEEEEES-
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEc---cccccccccCCceEEEEEECCCCCEEEEeC-
Confidence 21 2346799999988888666544 44 88999877543211 1100 0001114678899999998777665
Q ss_pred CeEEEEEcCCceeeecccc-----CCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCC
Q 001224 979 TQLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1053 (1120)
Q Consensus 979 ~~v~i~d~~~~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 1053 (1120)
+.+..||..+++. . +.. ......|.++...++|++.++. .. -+..||..+++... +.....++. ..
T Consensus 517 ~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~-~~~~~gl~~----~~ 587 (795)
T 4a2l_A 517 EGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKR-YNTTNGLPN----NV 587 (795)
T ss_dssp SCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEE-ECGGGTCSC----SC
T ss_pred CceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEE-eCCCCCCch----hh
Confidence 7799999887765 2 210 1124579999999999876644 34 68889988775543 332222332 22
Q ss_pred ccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1054 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1054 v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
+. ++...+ +|++.+++ ++-|..|++.+++
T Consensus 588 i~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 588 VY--GILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp EE--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred eE--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 44 677776 46555544 4557777776544
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=2.4e-13 Score=152.12 Aligned_cols=221 Identities=11% Similarity=0.091 Sum_probs=153.1
Q ss_pred CCccEEEEccCCCEEEEEe-C---Cc--EEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC-----------
Q 001224 825 EAVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----------- 887 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s-d---g~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----------- 887 (1120)
..+..++|||||++|+..+ + +. |.+|++.+++.......+ . +..++|+| |++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEc
Confidence 3467899999999999876 3 33 888898887765544433 3 99999999 88888877632
Q ss_pred ----------------CcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCC-------CEEEEECCCccccc
Q 001224 888 ----------------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQK 944 (1120)
Q Consensus 888 ----------------g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-------~v~iWd~~~~~~~~ 944 (1120)
..|++||+.+++.+..+.. . .+..++|+||| ++++++.++ ...||.+++++.
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-- 210 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-- 210 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce--
Confidence 5799999988876455555 3 78899999999 777776552 446665553321
Q ss_pred ceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eC--------CeEEEEEcCCceeeeccccCCCCCCeeE-EEECCCCc
Q 001224 945 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQ 1014 (1120)
Q Consensus 945 ~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~-l~~s~dg~ 1014 (1120)
..+... + .+.. ++|||++|+.. .+ ..|.+|| +++..... .+|...+.. +.|+ ||
T Consensus 211 -~~l~~~-~------~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~--~~~~~~~~~~~~~s-dg- 274 (347)
T 2gop_A 211 -EKMFEK-V------SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL--DEVDRGVGQAKIKD-GK- 274 (347)
T ss_dssp -EEEEEE-E------SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS--TTCCSEEEEEEEET-TE-
T ss_pred -EEeccC-c------ceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc--ccCCcccCCccEEc-Cc-
Confidence 111111 1 2333 39999988874 22 3688888 55544332 255678886 9999 98
Q ss_pred EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcE-EEEecC
Q 001224 1015 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPL 1084 (1120)
Q Consensus 1015 ~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v-~vW~~~ 1084 (1120)
++++++.++.++|| +.+++....+. + ...+. .++|+| .++++++.++.. .+|.+.
T Consensus 275 ~~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 275 VYFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWIM--GFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEEETTEEEEE-EESSSEEEEEC-------S--SSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEEecCCcEEEE-EcCCceEEEec-------C--CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence 88999999999999 88766543332 1 11244 788887 577787777765 788876
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=6.3e-13 Score=144.72 Aligned_cols=244 Identities=10% Similarity=0.079 Sum_probs=167.1
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
..+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.+++|+|+
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~d 79 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQ 79 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTT
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCC
Confidence 3344566788999999999977899999999999999887 221 3345678999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeeccc-ccCeEEEEEcCCCCceEEEE----ec-------------CCCcEEE
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKV 499 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s----~s-------------~d~~i~v 499 (1120)
|+++++...++.|.+||..+++.........+. ...+..++++|+|+ ++++ |+ ..+.|..
T Consensus 80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~ 157 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFR 157 (296)
T ss_dssp CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEE
T ss_pred CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEE
Confidence 998888777889999999887643211111111 23577899999998 6666 33 1235555
Q ss_pred EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCc----eeeeCCCCceeEEEEcCCCCeEE
Q 001224 500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTY 575 (1120)
Q Consensus 500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~ 575 (1120)
++.. ++ +..+..+......++|++ +++.+++.+.++.|.+|++...+.. ..+....
T Consensus 158 ~~~~-g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~---------------- 217 (296)
T 3e5z_A 158 LAPD-GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP---------------- 217 (296)
T ss_dssp ECTT-SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS----------------
T ss_pred ECCC-CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC----------------
Confidence 5544 44 444555666778888854 5567777778899999998732222 1111111
Q ss_pred ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEcc
Q 001224 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~ 654 (1120)
.....++++++|+.+++. ++.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..
T Consensus 218 -----~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 218 -----GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETN 285 (296)
T ss_dssp -----SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred -----CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence 123346667777655555 8899999986 777777765433 788999 68999999988763 4444544
Q ss_pred Cc
Q 001224 655 DG 656 (1120)
Q Consensus 655 ~~ 656 (1120)
+.
T Consensus 286 ~~ 287 (296)
T 3e5z_A 286 VR 287 (296)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=7.1e-13 Score=148.20 Aligned_cols=221 Identities=11% Similarity=0.102 Sum_probs=143.6
Q ss_pred CCceEEEEecCCCeEEEEEe--------CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224 365 SSPMSMDFHPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 436 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 436 (1120)
..+...++ ||++++.+.. .++.|.+||+.+++... + ..+..++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 45667778 8987555432 25679999998876432 2 4688999999
Q ss_pred CCCeEEEEECC---C--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC------------------
Q 001224 437 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------ 493 (1120)
Q Consensus 437 dg~~las~~~d---g--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~------------------ 493 (1120)
||++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 47778888876443 323334 999999999995 554442
Q ss_pred ---------CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCC-------eEEEEecCCCCCceeeeC
Q 001224 494 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA 557 (1120)
Q Consensus 494 ---------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~ 557 (1120)
...|.+||+.+++.+..+.. . .+..++|+ ++| +++++..++ ...+|.++ .+....+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25799999999887555554 3 67778875 566 777775542 44555544 222221111
Q ss_pred CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceeEEEecCCCCCCcCe
Q 001224 558 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR 629 (1120)
Q Consensus 558 ~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 629 (1120)
+ . .+.. ++|+|++|+.++.+ ..|++|| +++....... +...+..
T Consensus 216 ~-~---------------------~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~--~~~~~~~ 267 (347)
T 2gop_A 216 K-V---------------------SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE--VDRGVGQ 267 (347)
T ss_dssp E-E---------------------SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT--CCSEEEE
T ss_pred C-c---------------------ceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc--CCcccCC
Confidence 1 1 1111 26666677766643 4688888 5554333222 2235665
Q ss_pred -EEEcCCCCEEEEEECCCcEEEEEccC
Q 001224 630 -IRFNKDGCLLAVSTNDNGIKILATSD 655 (1120)
Q Consensus 630 -~~~s~~~~~l~~~~~dg~i~iwd~~~ 655 (1120)
+.|+ |+ ++++++.++.+++| +.+
T Consensus 268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 268 AKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp EEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred ccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 8899 88 88899999999999 863
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.54 E-value=8.4e-13 Score=146.58 Aligned_cols=282 Identities=12% Similarity=0.116 Sum_probs=182.5
Q ss_pred ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224 758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 837 (1120)
Q Consensus 758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~ 837 (1120)
..|.++.|++++..++..+.++.++.|.-. .| .. +.. +...+.+++|+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------~~-~~~--~~~~~~~~~~~~~g~ 57 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-----------------PW--------LE-ISK--KGLQLEGLNFDRQGQ 57 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-----------------EE--------EE-EES--SCCCEEEEEECTTSC
T ss_pred cccceeeecCCccceeEEeecccCcccccc-----------------ee--------EE-Eec--cCccccCcEECCCCC
Confidence 345566777777766666666666666210 00 00 111 445678999999999
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEeecceeeEeec--ccccc
Q 001224 838 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLK--GHSKR 910 (1120)
Q Consensus 838 ~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~~~~~l~--~h~~~ 910 (1120)
+++++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|.+||..+++....+. .+...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 136 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence 777776 78999999988776554444667899999999 88888877666 689999988776543332 34567
Q ss_pred eEEEEEccCCCEEEEEeC------CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEE
Q 001224 911 ITGLAFSHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 982 (1120)
Q Consensus 911 V~~l~~s~d~~~l~s~s~------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~ 982 (1120)
+.+++++|+|+++++... .+.|..|+.++++.. ...... ..+..++|+|+|+.|+++ .++.|.
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNI-------SVANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE--EeecCC-------CcccceEECCCCCEEEEEeCCCCeEE
Confidence 899999999998887654 244555554443221 111111 135789999999876654 468999
Q ss_pred EEEcCC-ceeeecc------ccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCcc
Q 001224 983 IFETTK-LECVKQW------VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1055 (1120)
Q Consensus 983 i~d~~~-~~~~~~~------~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 1055 (1120)
+||..+ +..+..+ ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..... ..|+ ...
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~---~~~ 281 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH---MLR 281 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC---SCB
T ss_pred EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc---ccC
Confidence 999964 3322111 11122 46788999999998888878899999998 5666665541110 0011 012
Q ss_pred ceEEEecCCCCCEEEEEeCCC----cEEEEecC
Q 001224 1056 PLVIAAHPQEPNEFALGLSDG----GVHVFEPL 1084 (1120)
Q Consensus 1056 ~~~i~~~p~d~~~l~s~~~Dg----~v~vW~~~ 1084 (1120)
+..++|+| |++.|+.++.++ .-.||.+.
T Consensus 282 ~~~~~~~~-dg~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 282 STHPQFIP-GTNQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp CCEEEECT-TSCEEEEEEECGGGTCCEEEEEEE
T ss_pred cceEEECC-CCCEEEEEeCccCCCCCceEEEEe
Confidence 34899998 566776665553 33455444
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.53 E-value=8.4e-13 Score=162.82 Aligned_cols=248 Identities=10% Similarity=-0.006 Sum_probs=163.9
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCC----cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 438 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 438 (1120)
|...+..++|||||++|+.+.+.+| +|++||+.+++.+.. . +. ...+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~~--~~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------LE--RVKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------EE--EECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------cc--CcccceEEEEeCC
Confidence 4446889999999997555544444 899999999987642 0 11 1136789999999
Q ss_pred CeEEEEECCCe----------------EEEEEccCCcee-eeeeeecccccCeEEEEEcCCCCceEEEEecC-----CCc
Q 001224 439 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKT 496 (1120)
Q Consensus 439 ~~las~~~dg~----------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~-----d~~ 496 (1120)
+.|+.++.++. |++|++.++... ........|...+..++|+|||+. |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988766 999999887632 111122335667889999999995 444332 568
Q ss_pred EEEEECCC------Cc-eeEEeeccccCeEEEeeccCCCceEEEEEec-C---CeEEEEecCCCCC--ceeeeCCCCcee
Q 001224 497 IKVWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-D---GKIKAWLYDNLGS--RVDYEAPGRWCT 563 (1120)
Q Consensus 497 i~vwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d---g~i~iwd~~~~~~--~~~~~~~~~~v~ 563 (1120)
|++||+.+ +. ....+..+...+... |++ +|..|+..+. + +.|.+||+.+... ...+..+..
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--- 334 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE--- 334 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC---
Confidence 99999987 53 456676676666553 444 3345554443 2 3699999876542 122222221
Q ss_pred EEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCe--EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEE
Q 001224 564 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 641 (1120)
Q Consensus 564 ~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 641 (1120)
...+..+.+++++..+++...++. |++|++.+++.+..+..+ ...+..++++|++..++.
T Consensus 335 ----------------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 335 ----------------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp ----------------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEE
T ss_pred ----------------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEE
Confidence 012333444444446777777874 666787778877777655 345778899999887664
Q ss_pred EEC----CCcEEEEEccCc
Q 001224 642 STN----DNGIKILATSDG 656 (1120)
Q Consensus 642 ~~~----dg~i~iwd~~~~ 656 (1120)
... .++|..||+.++
T Consensus 397 ~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEECSSCCCEEEEEETTSS
T ss_pred EEeCCCCCCEEEEEECCCC
Confidence 432 478999999876
No 186
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=8.9e-12 Score=136.33 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=142.2
Q ss_pred CccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceee
Q 001224 826 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK 901 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~ 901 (1120)
....++|+|||+++.++. ++.|.++|+.+++.+.++.... . ...+ |.+.+.+++.+.||.+.+.++.+ ++..
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceee-cCCCceeEEECCCCCEEEEECCCCCeEE
Confidence 355688999999888775 4789999999999988886422 1 2233 43566777788899998888876 5543
Q ss_pred Eeecccc----cceE-EEEEc-cCCCEEEEEeCCCCEEEEECCCcccccceeeecc------CCCCCCCCCCcEEEEccC
Q 001224 902 SKLKGHS----KRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQD 969 (1120)
Q Consensus 902 ~~l~~h~----~~V~-~l~~s-~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~fspd 969 (1120)
.....+. .++. ...|. ++|+++. .+.+|+|.+.|+.+............ .+..+ .....++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~ 290 (386)
T 3sjl_D 214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRA 290 (386)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETT
T ss_pred EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCC
Confidence 2221111 2222 24664 6775554 56689999999977542211111100 11111 24566888999
Q ss_pred CcEEEEEe-----------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEE-cCCcEEEEEcCCccee
Q 001224 970 QIHFLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLR 1036 (1120)
Q Consensus 970 g~~la~~~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~iwd~~~~~~~ 1036 (1120)
++.+.+.. ...|.++|+.+++.+..+.. ...+.+|+|++|++ +|+++. .++.|.|+|..+++.+
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 99888852 14799999999999999875 34789999999997 676655 4899999999999999
Q ss_pred eeeC
Q 001224 1037 CRIN 1040 (1120)
Q Consensus 1037 ~~~~ 1040 (1120)
..+.
T Consensus 368 ~~i~ 371 (386)
T 3sjl_D 368 RSVN 371 (386)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9887
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=1e-12 Score=144.97 Aligned_cols=238 Identities=11% Similarity=0.128 Sum_probs=170.7
Q ss_pred CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224 825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 903 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 903 (1120)
.....+++.. ++..++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 3456677743 33444444 7899999999999988885 346789999999 776655554789999999999988777
Q ss_pred ecccc-----cceEEEEEccCCCEEEEEe-CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-
Q 001224 904 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 976 (1120)
Q Consensus 904 l~~h~-----~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~- 976 (1120)
+.... .....+++ .+++.+++.. .++.|.+||..+++.... +.. + .....++++|+|++++++
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~--i~~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE--LTI--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE--EEC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE--EEc--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 14567777 3444444443 488999999998654322 111 2 134788999999987774
Q ss_pred eC----------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccC
Q 001224 977 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1046 (1120)
Q Consensus 977 ~d----------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~ 1046 (1120)
.+ +.|.++|..+++....+.... ...+..++|+||+++|+++.. .|.+||..+++.... .+.+
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~----~~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR----PFLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS----CSBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee----eeec
Confidence 33 689999999998877665322 347899999999999988754 999999999886421 1122
Q ss_pred CCCCCCCccceEEEecCCCCCEEEEE----eCCCcEEEEecCCCC
Q 001224 1047 AGVSSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1047 ~g~~~~~v~~~~i~~~p~d~~~l~s~----~~Dg~v~vW~~~~~~ 1087 (1120)
.+ .-.|-.++++|+++.++++. ..++.|.+|+.. ++
T Consensus 264 ~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 264 FR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred CC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 11 12355899999767777777 678999999988 66
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.52 E-value=4.7e-12 Score=156.14 Aligned_cols=245 Identities=9% Similarity=0.041 Sum_probs=169.0
Q ss_pred ccccEEEEEEcCCCceEEEeccCc-----eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEE
Q 001224 756 RATKISRLIFTNSGNAILALASNA-----IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 830 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l 830 (1120)
+...+..++|||||+.|+.+..++ .|++||+ .+|+.....+ ....+..+
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~----------------------~tg~~~~~~~----~~~~~~~~ 176 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV----------------------DGAKELPDVL----ERVKFSCM 176 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET----------------------TTTEEEEEEE----EEECSCCE
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC----------------------CCCCCCcccc----cCcccceE
Confidence 445688999999999998776542 6777766 3443322111 11236679
Q ss_pred EEccCCCEEEEEe-CCc----------------EEEEEcCCCcee--e--eecCCCCCeEEEEEecCCCcEEEEEeC---
Q 001224 831 ALSKNDSYVMSAS-GGK----------------ISLFNMMTFKTM--A--TFMPPPPAATFLAFHPQDNNIIAIGMD--- 886 (1120)
Q Consensus 831 ~~s~d~~~l~~~s-dg~----------------i~vwd~~~~~~~--~--~~~~~~~~i~~l~~sp~d~~~lasg~~--- 886 (1120)
+|+|||+.|+.++ ++. |++|++.+++.. . ....+...+..++|+| |+++|+.++.
T Consensus 177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~ 255 (710)
T 2xdw_A 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGC 255 (710)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSS
T ss_pred EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccC
Confidence 9999999999887 544 999999887632 2 2223455688999999 8888887765
Q ss_pred --CCcEEEEEeec------ce-eeEeecccccceEEEEEccCCCEEEEEeCCC----CEEEEECCCcccccceeeeccCC
Q 001224 887 --DSSIQIYNVRV------DE-VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTG 953 (1120)
Q Consensus 887 --dg~v~vwd~~~------~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~v~iWd~~~~~~~~~~~~~~~~~ 953 (1120)
+..|++||+.+ +. ....+..+...+.. .|+++|+.|+..+.++ .|.+||+.++.......+...
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-- 332 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE-- 332 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--
T ss_pred CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC--
Confidence 56899999987 53 45667777766655 5889999887665533 599999987643222222211
Q ss_pred CCCCCCCCcEEEEccCCcEEEEE-eCC--eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE----cCCcEE
Q 001224 954 RTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF----LDATVC 1026 (1120)
Q Consensus 954 ~~~~~~~i~~~~fspdg~~la~~-~d~--~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~----~Dg~v~ 1026 (1120)
.. ...+..++|++++.++++. .++ .|.+|++.+++.+..+. .+.+.|..++++|+++.++... ..++|+
T Consensus 333 ~~--~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 408 (710)
T 2xdw_A 333 HE--KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP--LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIY 408 (710)
T ss_dssp CS--SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--CCSSEEEEEECCTTCSEEEEEEECSSCCCEEE
T ss_pred CC--CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--CCCceEEEEecCCCCCEEEEEEeCCCCCCEEE
Confidence 11 0246778898777777774 666 46777876777666655 3477889999999998666432 347899
Q ss_pred EEEcCCcc
Q 001224 1027 VFSAANLK 1034 (1120)
Q Consensus 1027 iwd~~~~~ 1034 (1120)
+||+.+++
T Consensus 409 ~~d~~tg~ 416 (710)
T 2xdw_A 409 HCDLTKEE 416 (710)
T ss_dssp EEETTSSS
T ss_pred EEECCCCc
Confidence 99999887
No 189
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=2e-08 Score=125.12 Aligned_cols=609 Identities=11% Similarity=0.097 Sum_probs=322.4
Q ss_pred CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 443 (1120)
...|++|.-..+|. |-.|+.+| +..||-.+ |+.+....... . ...-....|.+|...++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~~~--~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEEQSS--S--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCSSCS--S--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCCCCC--c--cccccccccceEEEcCCCCEEEE
Confidence 46799999999996 55566666 66677442 11221100000 0 00012346999999988884556
Q ss_pred EECCCeEEEEEccCCceeeeeee-ecc---cccCeEEEEEcC--CCCceEEEEecCCCcEEEEECCCCceeEEee-----
Q 001224 444 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFE----- 512 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~~~~~~~~~-l~~---h~~~V~~v~~s~--d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~----- 512 (1120)
|+.++-+..||..+++....... ... ....|.++.... +|. +..++.++.|..+|..+++......
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77774599999987653221000 001 123688888877 665 4445545568899987766533211
Q ss_pred ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224 513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592 (1120)
Q Consensus 513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~ 592 (1120)
.....|.++.. +.++ .|..++.++-|..||..+.... .+... +... .......+..+..++++
T Consensus 160 l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~-~~~~~----------~~~~---~~l~~~~i~~i~~d~~g 222 (781)
T 3v9f_A 160 LPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVK-HFVHD----------PQNP---NSLPGNDVRCIYKDTNG 222 (781)
T ss_dssp CSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEE-EECC---------------------CCSSEEEEEECTTC
T ss_pred CCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceE-eeecC----------CCCc---ccCCCCceeEEEEcCCC
Confidence 11245777664 3343 4555666656888887653211 11100 0000 00011234555555555
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccc
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 667 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 667 (1120)
. |..++.+ -+.+||..+++........ -....|.++...++|.+. +|+..+.|.+++..++ ... .+....
T Consensus 223 ~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~~~-~~~~~~ 297 (781)
T 3v9f_A 223 N-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQN-QFL-LPEQIR 297 (781)
T ss_dssp C-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC-----------
T ss_pred C-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCC-eee-eeeccc
Confidence 5 4445555 6899998776543221111 112458888888887654 5666567888887665 211 111000
Q ss_pred ccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccce
Q 001224 668 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 747 (1120)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 747 (1120)
........... .+... .-..+.... ...+-.+..++-+..++..... ..
T Consensus 298 f~~~~~~~~~~-~l~~~-------------------------~v~~i~~D~-~g~lWigt~~~Gl~~~~~~~~~----~~ 346 (781)
T 3v9f_A 298 FEFIREGDNNY-SLSNA-------------------------SARYIFQDS-FNNIWIGTWGGGINFISNAPPT----FH 346 (781)
T ss_dssp CEEECBCSSTT-SBSSS-------------------------CEEEEEECS-SCCEEEEEBSSCEEEECSSCCS----CE
T ss_pred cccccCCCCCC-CCCCC-------------------------eEEEEEEeC-CCCEEEEecCCeEEEeCCCCCc----ce
Confidence 00000000000 00000 000011112 2344555555666666654321 11
Q ss_pred eecc------CCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCC
Q 001224 748 SLRL------PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 821 (1120)
Q Consensus 748 ~~~~------~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~ 821 (1120)
.+.. +.......|.++...++|. |..++.++-+..|+.....+. .+.. ...
T Consensus 347 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~----------~~~ 403 (781)
T 3v9f_A 347 TWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI------------YNKE----------NRE 403 (781)
T ss_dssp EEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE------------CC---------------
T ss_pred eeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE------------EccC----------CCC
Confidence 1110 1112346789999988887 555665555666665322110 0000 000
Q ss_pred CCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeec--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224 822 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 899 (1120)
Q Consensus 822 ~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 899 (1120)
.....|.+++..++|.+.+...++.|..++..+++...... .....|.++...+ ++++.+ |+. +-|..||..+++
T Consensus 404 ~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 404 LLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKK 480 (781)
T ss_dssp CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSS
T ss_pred CCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCe
Confidence 13567889998888876664436789999987765432221 2345789998887 666544 555 558889987765
Q ss_pred eeEeeccc-----ccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224 900 VKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 974 (1120)
Q Consensus 900 ~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la 974 (1120)
........ ...|.++...++|.+.+....+| |..||..+++.. ......+ .....|.++...++|.+.+
T Consensus 481 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~---~~~~~~~--l~~~~i~~i~~d~~g~lWi 554 (781)
T 3v9f_A 481 VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR---KFNQYEG--FCSNTINQIYRSSKGQMWL 554 (781)
T ss_dssp CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE---EECTTTT--CSCSCEEEEEECTTSCEEE
T ss_pred EEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE---EccCCCC--CCCCeeEEEEECCCCCEEE
Confidence 43322212 46789999998887766443345 777887764321 1111111 1124678899999998777
Q ss_pred EEeCCeEEEEEcCCceeeeccccCC-CCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCC
Q 001224 975 VVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1053 (1120)
Q Consensus 975 ~~~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 1053 (1120)
.+.+|-+..||..+++...--...+ ....|.++...++|.+.+++ .+| |..|+..+++.. .+....-++.. .
T Consensus 555 ~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~~~~-~~~~~dGl~~~----~ 627 (781)
T 3v9f_A 555 ATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKKCFY-TYDHSNNIPQG----S 627 (781)
T ss_dssp EETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTTEEE-EECGGGTCCSS----C
T ss_pred EECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCCceE-EecccCCcccc----c
Confidence 6664443889887765432111111 14568899999999876644 445 777888776543 33322222211 1
Q ss_pred ccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1054 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1054 v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
...-++...+ +| .|..|+.+| +..+++..
T Consensus 628 f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 628 FISGCVTKDH-NG-LIYFGSING-LCFFNPDI 656 (781)
T ss_dssp EEEEEEEECT-TS-CEEEEETTE-EEEECSCC
T ss_pred cccCceEECC-CC-EEEEECCCc-eEEEChhh
Confidence 1122455555 45 455566677 56667654
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=2.7e-11 Score=135.25 Aligned_cols=204 Identities=9% Similarity=0.004 Sum_probs=140.9
Q ss_pred ccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeee-ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE
Q 001224 827 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 902 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 902 (1120)
...++++|||+++++++ ++.|.++| .+++.+.. +.... ++.+.|++.+.+++.+.||.+.++|. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34688999999988875 36799999 99988877 65322 25566645567777888999999999 877653
Q ss_pred eec-----ccccce-EEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCC----CCCCCCCcEEEEccCCcE
Q 001224 903 KLK-----GHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIH 972 (1120)
Q Consensus 903 ~l~-----~h~~~V-~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~fspdg~~ 972 (1120)
... ....++ ....+.+++..++..+.++.+.+.|+.+........+...... .........++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 111221 2356677766655555788899999876432211111111100 000123345889999998
Q ss_pred EEEEe-----------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEE-cCCcEEEEEcCCcceeeee
Q 001224 973 FLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus 973 la~~~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~iwd~~~~~~~~~~ 1039 (1120)
+.++. .+.|.++|+.+++.+..+.. .....+++|+|||+ +++++. .++.|.|||+.+++.+..+
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 88742 25799999999999988864 33689999999999 777777 4899999999999999874
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.51 E-value=3.1e-11 Score=131.41 Aligned_cols=281 Identities=11% Similarity=0.107 Sum_probs=190.3
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
+...+.+++++++|+.+++...++.|.+|+.. +......... ....+.+++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--PDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--ccCceeeEEECCC
Confidence 44678999999999977776667888887652 2211111111 3456889999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcee-eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe-ecccccceE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRIT 912 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~ 912 (1120)
|...++.. ++.|..||.. ++.. ..+......+.++++++ +++++++...++.|.+||. +++.... +..+...+.
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 99888776 7889999986 3321 22223455789999999 8888887777889999998 5544322 233456789
Q ss_pred EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee
Q 001224 913 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 991 (1120)
Q Consensus 913 ~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~ 991 (1120)
++++.++|.++++...++.|..||. +++... .... .. ...+..++++++|.+.++. .++.|.+||. +++.
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIP-TP---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCC-CC---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 9999999988888777888999998 543211 1111 11 1356899999999977665 4789999999 6654
Q ss_pred eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224 992 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus 992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
.. +....+...+.+++++++|+++++...++.|.+||. +++.. .+. .+.+ . -.+.++++ + ++.+.++
T Consensus 216 ~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~--~--~~~~~i~~-~-~g~l~v~ 282 (299)
T 2z2n_A 216 TE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK--S--AEPHGICF-D-GETIWFA 282 (299)
T ss_dssp EE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS--S--CCEEEEEE-C-SSCEEEE
T ss_pred EE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC--C--CccceEEe-c-CCCEEEE
Confidence 33 333344678999999999997776657889999998 45433 332 1211 1 12347788 6 5666665
Q ss_pred EeCCCcEEEEecCCCC
Q 001224 1072 GLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1072 ~~~Dg~v~vW~~~~~~ 1087 (1120)
.. .+.+..+++.+++
T Consensus 283 ~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 283 ME-CDKIGKLTLIKDN 297 (299)
T ss_dssp ET-TTEEEEEEEC---
T ss_pred ec-CCcEEEEEcCccc
Confidence 54 6778888877643
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=1.9e-12 Score=138.11 Aligned_cols=251 Identities=10% Similarity=0.031 Sum_probs=180.9
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCceeeeecCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc-cce
Q 001224 835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI 911 (1120)
Q Consensus 835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V 911 (1120)
.++.|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++|+ +.++.|+.||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456788887 8999999999999999998766 4789999999 888888 35778999998 899998888753 578
Q ss_pred EEEEEccCCCEEEEEeC-CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCc
Q 001224 912 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL 989 (1120)
Q Consensus 912 ~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~ 989 (1120)
.++.+.+||+++++.+. ++.|..+|. .++......+. .+..........+++.++|.++++. .++.|..||.. |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 89999999999999887 677777775 33332222211 1100001234567889999999985 78999999998 9
Q ss_pred eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEE
Q 001224 990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1069 (1120)
Q Consensus 990 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l 1069 (1120)
+.+..+.. ...+.++.+.++|.++++++.++.|..+|..+|+.+.++.... .+.. .-..+..++..+ +++++
T Consensus 156 ~~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 156 QLLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IEGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp CEEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SBSC---CCSEEEEEEECT-TSCEE
T ss_pred CEEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CCCc---cccccccceEcC-CCCEE
Confidence 88877763 2456778889999999999888899999999999998876211 1111 112345677777 57777
Q ss_pred EEEe--CC------CcEEEEec-CCCCCCCCCCCCCCCCCC
Q 001224 1070 ALGL--SD------GGVHVFEP-LESEGKWGVPPPVDNGST 1101 (1120)
Q Consensus 1070 ~s~~--~D------g~v~vW~~-~~~~~~~~~~~p~~~~~~ 1101 (1120)
++.. .. +..+++++ .+++-.|......+-|.+
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~ 268 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMI 268 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCC
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccccce
Confidence 7763 11 24466666 466677776555444433
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.50 E-value=3.4e-12 Score=140.78 Aligned_cols=273 Identities=10% Similarity=0.017 Sum_probs=183.4
Q ss_pred CCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeec
Q 001224 728 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 807 (1120)
Q Consensus 728 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 807 (1120)
.++.+.++|..+.+.......- ............+.+. +++..++...++.|.+||.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~-~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~--------------------- 71 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR-ANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDI--------------------- 71 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH-HHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEET---------------------
T ss_pred CCceEEEEECCCCEEhhhhHhh-hcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEEC---------------------
Confidence 4788999998764432211100 0001112345667774 4555555556788888775
Q ss_pred CCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCC-----CCeEEEEEecCCCcEE
Q 001224 808 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNII 881 (1120)
Q Consensus 808 ~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~l 881 (1120)
.+++.+... . .......++++++++..++.. ++.|.+||..+++....+.... .....+++ . +++++
T Consensus 72 -~t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 72 -NTFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp -TTCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred -cccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 344432221 1 235678899999996555553 8999999999988877665332 14567777 4 66666
Q ss_pred EEEe-CCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCC----------CCEEEEECCCcccccceeeec
Q 001224 882 AIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQI 950 (1120)
Q Consensus 882 asg~-~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----------g~v~iWd~~~~~~~~~~~~~~ 950 (1120)
++.. .++.|.+||+.+++.+..+... .....++++++|++++++..+ +.|.+||..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 6654 4889999999999888777643 345789999999988777655 789999998865322 2222
Q ss_pred cCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCC-CcEEEEE----EcCCcE
Q 001224 951 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-SQLVYAC----FLDATV 1025 (1120)
Q Consensus 951 ~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~----~~Dg~v 1025 (1120)
..+ .....++|+|++++|.++.. .|.+||..+++.........+......++++|+ ++++++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 14689999999999888654 999999998876432222222467899999995 4445554 467999
Q ss_pred EEEEcCCcceeeeeC
Q 001224 1026 CVFSAANLKLRCRIN 1040 (1120)
Q Consensus 1026 ~iwd~~~~~~~~~~~ 1040 (1120)
.+||.. ++.+..+.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 99888776
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=7.3e-13 Score=162.79 Aligned_cols=241 Identities=13% Similarity=0.066 Sum_probs=161.9
Q ss_pred CCCCccEEEEccCCCEEEEEe------CCcEEEEEcCCCcee-eeecCCCCCeEEEEEecCCCcEEEEEeCCCc------
Q 001224 823 PEEAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSS------ 889 (1120)
Q Consensus 823 ~~~~v~~l~~s~d~~~l~~~s------dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~------ 889 (1120)
|...+.+++|||||++||.+. +.+|++||+.+++.+ .... .......++|+| |++.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 455688999999999999553 257999999998865 2111 111126899999 8999998888776
Q ss_pred -------EEEEEeecce----eeEeecccccceEEEEEccCCCEEEEEeCCC----CEEEEECCCcccccceeeeccCCC
Q 001224 890 -------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGR 954 (1120)
Q Consensus 890 -------v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~v~iWd~~~~~~~~~~~~~~~~~~ 954 (1120)
|++|++.++. ++.....|...+.++.|||||++|+.++.++ .|.+|+..+++. ..+....
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~-- 271 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKGV-- 271 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEECS--
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecCC--
Confidence 9999998765 4444455667889999999999998877666 566776544321 2222211
Q ss_pred CCCCCCCcEEEEccCCcEEEE-Ee----CCeEEEEEcCCcee--eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEE
Q 001224 955 TPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1027 (1120)
Q Consensus 955 ~~~~~~i~~~~fspdg~~la~-~~----d~~v~i~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~i 1027 (1120)
..+....+ ++|. ++. +. ++.|.+||+.+++. ...+........+..++|+ ++.++++...|+..+|
T Consensus 272 ----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 272 ----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp ----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred ----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 13455556 6666 554 43 47899999987653 2233322224568889998 7888999999999888
Q ss_pred EEcC-CcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEE-EE---eCCCcEEEEecCCCC
Q 001224 1028 FSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LG---LSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1028 wd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~-s~---~~Dg~v~vW~~~~~~ 1087 (1120)
|.++ +++....+. ++. ...+. .++++| |++.++ +. ...++|++||+.+++
T Consensus 345 ~~~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 345 RVATLKGKPVRTVQ----LPG---VGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEETTCCEEEECC----CSS---SSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEeCCCCeeEEec----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8765 455554444 221 11133 567888 566655 33 234789999998877
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.48 E-value=4e-12 Score=138.30 Aligned_cols=238 Identities=10% Similarity=0.068 Sum_probs=165.7
Q ss_pred cccEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 757 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 757 ~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
.....+++|+|+|+ .+++...++.|..|+... + ... +.. +...+.+++++++
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~----------------------~-~~~--~~~--~~~~~~~l~~~~d 79 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG----------------------Q-LSP--EMH--PSHHQNGHCLNKQ 79 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS----------------------C-EEE--EES--SCSSEEEEEECTT
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCC----------------------C-eEE--EEC--CCCCcceeeECCC
Confidence 34567899999998 667777788888887532 2 111 111 4566889999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeeecCC----CCCeEEEEEecCCCcEEEEE----eC-------------CCcEEEE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIG----MD-------------DSSIQIY 893 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg----~~-------------dg~v~vw 893 (1120)
|+++++.. ++.|.+||..+++........ ...+..++++| +|+++++. +. .+.|..+
T Consensus 80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEE
Confidence 99887776 688999999877754333211 23467899999 88888873 21 2345444
Q ss_pred EeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECC-Cccc-ccceeeeccCCCCCCCCCCcEEEEccCCc
Q 001224 894 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEK-QKNRFLQIPTGRTPTAQSDTRVQFHQDQI 971 (1120)
Q Consensus 894 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~-~~~~~~~~~~~~~~~~~~i~~~~fspdg~ 971 (1120)
+.. ++ +..+..+.....+++|+||++.|++.+.++.|.+|++. .++. ...... ... ...+..++++++|+
T Consensus 159 ~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~---~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 159 APD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVE---PGKTDGLRVDAGGL 230 (296)
T ss_dssp CTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCS---SSCCCSEEEBTTSC
T ss_pred CCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCC---CCCCCeEEECCCCC
Confidence 443 43 44555666778999999999999888888999999997 3332 111222 111 13567899999999
Q ss_pred EEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEE-CCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224 972 HFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATF-SCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus 972 ~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~-s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
++++. ++.|.+||.. ++.+..+. .+.. +++++| +||++.|++++.++ +.-++..+.++.
T Consensus 231 l~v~~-~~~v~~~~~~-g~~~~~~~--~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~ 290 (296)
T 3e5z_A 231 IWASA-GDGVHVLTPD-GDELGRVL--TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE 290 (296)
T ss_dssp EEEEE-TTEEEEECTT-SCEEEEEE--CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred EEEEc-CCeEEEECCC-CCEEEEEE--CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence 77777 8999999987 66666665 3344 999999 68999999888764 555566665544
No 196
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.48 E-value=5.1e-11 Score=132.10 Aligned_cols=246 Identities=13% Similarity=0.081 Sum_probs=163.2
Q ss_pred eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
...+...+.+++|+|+|+ |++++..++.|.+||..+++.... ...+...+.+++|+|+|+
T Consensus 40 ~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp EESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSC
T ss_pred EeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEEECCCCc
Confidence 344677889999999999 688888899999999988765431 223556899999999999
Q ss_pred eEEEEECC----CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC------CCcEEEEECCCCceeE
Q 001224 440 LFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQY 509 (1120)
Q Consensus 440 ~las~~~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~------d~~i~vwd~~~~~~~~ 509 (1120)
++++...+ +.|.+||.+++...... .-..+...+.+++++|+|+ ++++... .+.|..||..+++...
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTP 176 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEE
T ss_pred EEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEE
Confidence 88887766 68999999887643211 1113456799999999998 5555543 3456666655555433
Q ss_pred EeeccccCeEEEeeccCCCceEE-EEEecCCeEEEEecCCCCC-ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224 510 IFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587 (1120)
Q Consensus 510 ~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~ 587 (1120)
+..+...+..++|++ ++..| ++.+.++.|.+||+..... ...+.. .+.....+ ......++
T Consensus 177 -~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~------~~~~~~~~--------~~~~~~i~ 239 (333)
T 2dg1_A 177 -IIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGA------TIPYYFTG--------HEGPDSCC 239 (333)
T ss_dssp -EEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE------EEEEECCS--------SSEEEEEE
T ss_pred -eecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccc------eEEEecCC--------CCCCCceE
Confidence 323344577788754 45544 4555678999999864322 211100 00000000 01345577
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC----CCCcCeEEEcCCCCEEEEEECCC
Q 001224 588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDGCLLAVSTNDN 646 (1120)
Q Consensus 588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg 646 (1120)
++++|+.+++...++.|.+||. +++.+..+..... ...+.+++|+||++.|++++.++
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 7788777777778899999998 5666666654321 12478999999988777666653
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=5.8e-12 Score=134.97 Aligned_cols=238 Identities=11% Similarity=0.063 Sum_probs=166.4
Q ss_pred CccEEEEccCCCEEE-EEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224 826 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 903 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 903 (1120)
...+++++++|+.++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence 678999999999776 434 78899999866543322223345688999999 787666555 88999999765543 33
Q ss_pred ec-ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeE
Q 001224 904 LK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL 981 (1120)
Q Consensus 904 l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v 981 (1120)
+. .....+.+++++++|+++++...++.|.+|+..+.... .. .... ...+..++++++|+++++. .++.|
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~~-~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VL-PFTG---LNDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----EC-CCCS---CCSCCCEEECTTCCEEEEEGGGTEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----ee-cccc---CCCceeEEEeCCCCEEEEECCCCEE
Confidence 32 33356899999999998888778889999975543211 11 1111 1256889999999977665 56899
Q ss_pred EEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEe
Q 001224 982 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1061 (1120)
Q Consensus 982 ~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~ 1061 (1120)
.+||........... .+...+.+|+++++|.++++...++.|.+|+..+..... .. ..+ .-.+..+++
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----~~~----~~~p~~i~~ 241 (270)
T 1rwi_B 174 VKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----FTG----LNTPLAVAV 241 (270)
T ss_dssp EEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----CCS----CSCEEEEEE
T ss_pred EEEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----cCC----CCCceeEEE
Confidence 999988766543322 224678999999999877777778899999987654432 11 011 023458999
Q ss_pred cCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1062 HPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1062 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
+| +++++++...++.|+++++...+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 99 57888999999999999988765
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=2.3e-12 Score=158.32 Aligned_cols=283 Identities=10% Similarity=-0.043 Sum_probs=176.9
Q ss_pred cCCCcceeeccCCC---cceeeecccCCCCccceeeccC---CccccccEEEEEEcCCCceEEEe-----ccCceEEEee
Q 001224 717 LADVKPRITEESND---KSKVWKLTELSEPNQCRSLRLP---ENLRATKISRLIFTNSGNAILAL-----ASNAIHLLWK 785 (1120)
Q Consensus 717 ~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~s~~g~~l~~~-----~~dg~i~vw~ 785 (1120)
.+++++++....++ ...+|...... .....+.-+ ..+|...+..++|||||+.|+.+ +.+..|++||
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGES--GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTT--SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCC--CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 36777776555433 35566654321 112222111 12455678999999999998843 3345788777
Q ss_pred ecccccCCCCccccccCceeecCCCCCcc-cccCCCCCCCCCccEEEEccCCCEEEEEe-CCc-------------EEEE
Q 001224 786 WQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK-------------ISLF 850 (1120)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~-~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~-------------i~vw 850 (1120)
+. +|+.+ ...+ .......++|+|||+.|+.++ +.. |++|
T Consensus 154 l~----------------------tg~~~~~~~~----~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~ 207 (695)
T 2bkl_A 154 VD----------------------SGEWSKVDVI----EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH 207 (695)
T ss_dssp TT----------------------TCCBCSSCCB----SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred CC----------------------CCCCcCCccc----CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence 63 33332 1111 111226799999999999887 554 9999
Q ss_pred EcCCCc----eeeeecCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEEeecceeeEeecccccceEEEEEccCCCE
Q 001224 851 NMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 922 (1120)
Q Consensus 851 d~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~ 922 (1120)
++.+++ ++.....+...+..+.||| ||++|+.++.++ .|++|+..+++ ...+..+...+....+ ++|.+
T Consensus 208 ~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l 284 (695)
T 2bkl_A 208 TLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRF 284 (695)
T ss_dssp ETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEE
T ss_pred ECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcE
Confidence 998876 2333334556789999999 888888777665 66677654444 4555566666677767 56664
Q ss_pred EEEEe---CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcC-Cceeeecccc
Q 001224 923 LVSSG---ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECVKQWVP 997 (1120)
Q Consensus 923 l~s~s---~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~-~~~~~~~~~~ 997 (1120)
+++.. .++.|.+||+.+++......+. ..+.. ..+..++|+ ++.++++ ..|+..+||.+. +++....+..
T Consensus 285 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~--~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~ 359 (695)
T 2bkl_A 285 YVLTDEGAPRQRVFEVDPAKPARASWKEIV--PEDSS--ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQL 359 (695)
T ss_dssp EEEECTTCTTCEEEEEBTTBCSGGGCEEEE--CCCSS--CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCC
T ss_pred EEEECCCCCCCEEEEEeCCCCCccCCeEEe--cCCCC--CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecC
Confidence 45544 2578999999876432212222 11111 246778888 6666666 478877777654 3554444432
Q ss_pred CCCCCCeeEEEECCCCcEEEEEE----cCCcEEEEEcCCccee
Q 001224 998 RESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKLR 1036 (1120)
Q Consensus 998 ~~h~~~v~~l~~s~dg~~l~s~~----~Dg~v~iwd~~~~~~~ 1036 (1120)
.+.+.|..++++||++.|+... ..++|++||+.+++..
T Consensus 360 -~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 360 -PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp -SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred -CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 2256788899999998776333 3478999999988753
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.47 E-value=2.2e-10 Score=124.55 Aligned_cols=238 Identities=10% Similarity=0.029 Sum_probs=163.3
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
+...+.+++++++|+ ++++...++.|.+||.. ++.... .+..+...+.+++++++|++++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 457899999999999 56665557899999988 543321 0122446799999999999888
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE-eeccccCeEEE
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSV 521 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~ 521 (1120)
+...++.|..|+.. ++ +.. ..+......+.++++.++|. ++++...++.|.+||. +++.... ...+...+..+
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 87778899999987 33 221 12333456799999999998 6777777889999998 6654432 23344567888
Q ss_pred eeccCCCceEEEEEecCCeEEEEecCCCCCceee--eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
++. +++.+.++...++.|..||. +.. ...+ ..... ....++++++++.+++..
T Consensus 147 ~~~--~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~---------------------~~~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 147 TLG--SDNALWFTENQNNAIGRITE-SGD-ITEFKIPTPAS---------------------GPVGITKGNDDALWFVEI 201 (299)
T ss_dssp EEC--TTSCEEEEETTTTEEEEECT-TCC-EEEEECSSTTC---------------------CEEEEEECTTSSEEEEET
T ss_pred EEc--CCCCEEEEeCCCCEEEEEcC-CCc-EEEeeCCCCCC---------------------cceeEEECCCCCEEEEcc
Confidence 874 45567776666789999987 332 2211 11112 334555666666666666
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224 600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 653 (1120)
.++.|.+||. +++... +........+.+++++++|+++++...++.|..||.
T Consensus 202 ~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 202 IGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 6889999999 666433 332323346789999999997766657788999986
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=6.8e-12 Score=134.42 Aligned_cols=239 Identities=8% Similarity=0.030 Sum_probs=161.5
Q ss_pred CceEEEEecCCCeEEE-EEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224 366 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 444 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 444 (1120)
...+++++|+|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 788999999998 566 55778999999976654322 012233567889999999966665
Q ss_pred ECCCeEEEEEccCCceeeeeeeec-ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEee
Q 001224 445 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 523 (1120)
Q Consensus 445 ~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 523 (1120)
. ++.|.+||..+..... +. .....+..++++++|. ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999988754321 22 2335789999999998 6777777889999986655443322233345667777
Q ss_pred ccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCe
Q 001224 524 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 603 (1120)
Q Consensus 524 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 603 (1120)
. ++|.++++...++.|.+||............... ....++++++|..+++...++.
T Consensus 158 ~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------~p~~i~~d~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 158 D--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT---------------------APWGIAVDEAGTVYVTEHNTNQ 214 (270)
T ss_dssp C--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC---------------------SEEEEEECTTCCEEEEETTTSC
T ss_pred e--CCCCEEEEECCCCEEEEEecCCCceEeecccCCC---------------------CceEEEECCCCCEEEEECCCCc
Confidence 5 4556777777788999999775432211111112 3345566666656666667889
Q ss_pred EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 604 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 604 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
|.+|+........ .. ..+...+.+++++++|+++++...++.|++++....
T Consensus 215 v~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 215 VVKLLAGSTTSTV-LP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEECTTCSCCEE-CC-CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEEcCCCCccee-ec-cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 9999987654332 22 122245789999999998888888999999987654
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.46 E-value=7.2e-12 Score=137.08 Aligned_cols=277 Identities=9% Similarity=0.042 Sum_probs=184.8
Q ss_pred EEcCCCceEEEecc-----CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224 764 IFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 838 (1120)
Q Consensus 764 ~~s~~g~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~ 838 (1120)
...|+++.+++... ++.+.+.|. .+++.+.....+ ..+ .++++|||++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~----------------------~t~~v~~~I~vG---~~P--~va~spDG~~ 91 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDG----------------------EAGRVIGMIDGG---FLP--NPVVADDGSF 91 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEET----------------------TTTEEEEEEEEC---SSC--EEEECTTSSC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEEC----------------------CCCeEEEEEECC---CCC--cEEECCCCCE
Confidence 34578887776654 456666654 444433322211 222 4999999998
Q ss_pred EEEEe-----------CCcEEEEEcCCCceeeeecCCC-------CCeEEEEEecCCCcEEEEEeC--CCcEEEEEeecc
Q 001224 839 VMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVD 898 (1120)
Q Consensus 839 l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~ 898 (1120)
+++++ ++.|.+||..+++.+.++.... .....++|+| ||++|+++.. ++.|.++|+.++
T Consensus 92 lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 92 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK 170 (386)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC
Confidence 87764 4679999999999888774321 2466799999 8888887763 689999999999
Q ss_pred eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC-cccccceeeeccCCCCCCCCCC-cEEEEc-cCCcEEEE
Q 001224 899 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQFH-QDQIHFLV 975 (1120)
Q Consensus 899 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~~~~~~~~~i-~~~~fs-pdg~~la~ 975 (1120)
+.+.++.-... ...+....+.+++.+.||++.+.++.+ ++..... ..... .....+ ....|. ++|+++.+
T Consensus 171 ~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~v 243 (386)
T 3sjl_D 171 AFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVWP 243 (386)
T ss_dssp EEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEEE
T ss_pred cEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEEE
Confidence 99888853221 223433456777888899999998876 4431111 01111 101122 234664 78888778
Q ss_pred EeCCeEEEEEcCCce--eeeccc--------cCCCCCCeeEEEECCCCcEEEEEEc----------CCcEEEEEcCCcce
Q 001224 976 VHETQLAIFETTKLE--CVKQWV--------PRESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLKL 1035 (1120)
Q Consensus 976 ~~d~~v~i~d~~~~~--~~~~~~--------~~~h~~~v~~l~~s~dg~~l~s~~~----------Dg~v~iwd~~~~~~ 1035 (1120)
+.++.|.+.|+.+.. .+..+. ..-....+..++++++++.|+.+.. ...|.+.|+.+++.
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 788999999997653 333332 0001234456788999998888753 25799999999999
Q ss_pred eeeeCCCcccCCCCCCCCccceEEEecCCCCC-EEEEE-eCCCcEEEEecCCCC
Q 001224 1036 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALG-LSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1036 ~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~-~l~s~-~~Dg~v~vW~~~~~~ 1087 (1120)
+.++. .... .+ ++++++ |++ +|+++ ..++.|.|+|..+++
T Consensus 324 ~~~i~----vg~~-----~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 324 LAKFE----MGHE-----ID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEE----EEEE-----EC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEE----CCCC-----cc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence 99887 2211 33 899999 455 66664 458999999999988
No 202
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=3.5e-08 Score=122.80 Aligned_cols=509 Identities=11% Similarity=0.074 Sum_probs=284.4
Q ss_pred CCceEEEEec--CCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 365 SSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 365 ~~v~~v~~sp--dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
..|+++.... +|. |-.|+.++.|..||..+++.... .... ...-....|.++...++|.+.+
T Consensus 115 ~~i~~i~~d~~~~g~--lwi~t~~~gl~~~~~~~~~~~~~------~~~~--------~~~l~~~~i~~i~~d~~g~lwi 178 (781)
T 3v9f_A 115 NDVTHITSSVQAGKG--LWVCTYYRGIEYLDIATGKFTHY------NKST--------VPALPSEQTWTATEAEDGKLYI 178 (781)
T ss_dssp SCEEEEEECSSTTSE--EEEEESSSCEEEEETTTTEEEEE------STTT--------CTTCSCCCEEEEEEEETTEEEE
T ss_pred CcceEEEecCccCCC--EEEEECCCCeeEEECCCCeEEee------ccCc--------ccCCCccceEEEEECCCCCEEE
Confidence 4688988888 776 44456556788999877654321 0000 0001234688988888877665
Q ss_pred EEECCCeEEEEEccCCceeeeeeee----cccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeec-----
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG----- 513 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l----~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~----- 513 (1120)
|+.++-|..||..+++........ .-....|.++...++|. |..|+.+ -+.+||..+++.......
T Consensus 179 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~ 253 (781)
T 3v9f_A 179 -GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN---IWIGTSK-GLALFNANTETFTNFHNNPGNIH 253 (781)
T ss_dssp -EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC---EEEEETT-EEEEEETTTTEEEC---------
T ss_pred -EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC---EEEEeCC-cHheECCCCCcEEEEEcCCCccc
Confidence 555645888998876532210000 00135699999988887 3334444 688999877654322111
Q ss_pred --cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224 514 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 591 (1120)
Q Consensus 514 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~ 591 (1120)
....|.++.. +.+| .|..|+..+-|.++|..+......... ....+. .+... .+.....+.++..+.+
T Consensus 254 ~l~~~~i~~i~~--d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~f~~~~-~~~~~---~~l~~~~v~~i~~D~~ 323 (781)
T 3v9f_A 254 GALSSYIFSIKQ--LKDN-KLWIATELNGIMILDLQQNQFLLPEQI---RFEFIR-EGDNN---YSLSNASARYIFQDSF 323 (781)
T ss_dssp --CCCCEEEEEE--CTTS-EEEEEESSSCEEEEETTCC------------CEEEC-BCSST---TSBSSSCEEEEEECSS
T ss_pred cccCceEEEEEE--CCCC-CEEEEeCCCCeEEECCCCCeeeeeecc---cccccc-CCCCC---CCCCCCeEEEEEEeCC
Confidence 2356887774 4454 455566646677888765432111000 000000 00000 0112234555666666
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEe-------cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcc
Q 001224 592 KNRFLAAGDDFSIKFWDMDSVQLLTSID-------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 664 (1120)
Q Consensus 592 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 664 (1120)
|. |-.|+.++-|..++..++....... ..-....|.++...++|.+. +|+.++.|..|+..++. . ..+.
T Consensus 324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~-~-~~~~ 399 (781)
T 3v9f_A 324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRV-A-IYNK 399 (781)
T ss_dssp CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEE-E-ECC-
T ss_pred CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCe-E-EEcc
Confidence 55 6667777888999887654332211 01112357888888887755 56666778888865431 0 0000
Q ss_pred cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCc
Q 001224 665 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 744 (1120)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 744 (1120)
. .
T Consensus 400 ~---~--------------------------------------------------------------------------- 401 (781)
T 3v9f_A 400 E---N--------------------------------------------------------------------------- 401 (781)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C---C---------------------------------------------------------------------------
Confidence 0 0
Q ss_pred cceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCC
Q 001224 745 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 824 (1120)
Q Consensus 745 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~ 824 (1120)
.......|.++...++|. |..++.++.+..++.. ++........ ....
T Consensus 402 --------~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~----------------------~~~~~~~~~~-~~~~ 449 (781)
T 3v9f_A 402 --------RELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTR----------------------LKKFQIIELE-KNEL 449 (781)
T ss_dssp ----------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSS----------------------SCEEEECCST-TTCC
T ss_pred --------CCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCC----------------------CCcEEEeccC-CCCC
Confidence 000235677888888887 4445555556666542 2221111000 0134
Q ss_pred CCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCC-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224 825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 899 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 899 (1120)
..|.++...++|...+.. .+.|..+|..+++........ ...|.++...+ ++++.+ |+.++-|..||..+++
T Consensus 450 ~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGT-HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSEEEEEE-TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCCEEEEE-CCceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence 678899988888755544 467999998776543332212 35689999888 676554 5554457778876654
Q ss_pred eeEeecc----cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224 900 VKSKLKG----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 975 (1120)
Q Consensus 900 ~~~~l~~----h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~ 975 (1120)
.. .+.. ....|.++...++|.+.++.. +|.|..||..+++. .......+-. ...|.++...++|.+.++
T Consensus 527 ~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~---~~~~~~~gl~--~~~i~~i~~d~~g~lW~~ 599 (781)
T 3v9f_A 527 VR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY---QVFQRKEGLP--NTHIRAISEDKNGNIWAS 599 (781)
T ss_dssp EE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC---EEECGGGTCS--CCCCCEEEECSSSCEEEE
T ss_pred EE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE---EEccccCCCC--CceEEEEEECCCCCEEEE
Confidence 33 2321 245789999988888766544 66548888776432 2222222222 135788999999987766
Q ss_pred EeCCeEEEEEcCCceeeeccccCCC-CC--CeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224 976 VHETQLAIFETTKLECVKQWVPRES-SA--PITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus 976 ~~d~~v~i~d~~~~~~~~~~~~~~h-~~--~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
+ .+.|..|+..+.....--...+- .. ...++...++|++++ |+.+|. ..++..
T Consensus 600 t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl-~~f~p~ 655 (781)
T 3v9f_A 600 T-NTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSINGL-CFFNPD 655 (781)
T ss_dssp C-SSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTEE-EEECSC
T ss_pred c-CCceEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCCce-EEEChh
Confidence 5 44577888876654322111121 11 235677788888666 566774 445544
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.44 E-value=1.4e-10 Score=129.41 Aligned_cols=237 Identities=11% Similarity=0.028 Sum_probs=161.5
Q ss_pred EEEEccCCCEEEEEe-----------CCcEEEEEcCCCceeeeecCC-------CCCeEEEEEecCCCcEEEEEeC--CC
Q 001224 829 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS 888 (1120)
Q Consensus 829 ~l~~s~d~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~lasg~~--dg 888 (1120)
.++++|||++++++. ++.|.+||..+++.+.++... ......++|+| |+++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999999874 467999999998887776432 12356899999 8888888764 57
Q ss_pred cEEEEEeecceeeEe-ecccccceEEEEEccCC-CEEEEEeCCCCEEEEECCCcccccceee-eccCCCCCCCCCCcEEE
Q 001224 889 SIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQ 965 (1120)
Q Consensus 889 ~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 965 (1120)
.|.++| .+++.+.. +.... ++.+.|++ +.+++.+.||.+.+++. +++....... ....+..+ ......
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p---~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN---LLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc---eeecce
Confidence 899999 99988877 54322 24455655 45667788999999999 6544311100 00111110 112345
Q ss_pred EccCCcE-EEEEeCCeEEEEEcCCce--eeeccccCC--------CCCCeeEEEECCCCcEEEEEEc----------CCc
Q 001224 966 FHQDQIH-FLVVHETQLAIFETTKLE--CVKQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DAT 1024 (1120)
Q Consensus 966 fspdg~~-la~~~d~~v~i~d~~~~~--~~~~~~~~~--------h~~~v~~l~~s~dg~~l~s~~~----------Dg~ 1024 (1120)
+.+++.. ++++..+.+.+.|+.++. .+..+.... .......++++||++.|+++.. .+.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 6666544 444677889999987552 222221100 1233445889999998887654 357
Q ss_pred EEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC-EEEEEe-CCCcEEEEecCCCC
Q 001224 1025 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1087 (1120)
Q Consensus 1025 v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~-~l~s~~-~Dg~v~vW~~~~~~ 1087 (1120)
|.++|..+++.+.++. ... .+..++|+| |++ +++++. .++.|.|||+.+++
T Consensus 300 V~VID~~t~~vv~~i~----~g~-------~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 300 VTSVTGLVGQTSSQIS----LGH-------DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEEECCCCEEEEEEE----CCC-------CcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999999999998876 111 233799999 577 777777 58999999999988
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.43 E-value=1.6e-11 Score=130.90 Aligned_cols=232 Identities=12% Similarity=0.090 Sum_probs=164.9
Q ss_pred EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCC-CceEEEEEcCCCCeEEEEECCCeEEEEEccC
Q 001224 379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 457 (1120)
Q Consensus 379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~dg~v~iwd~~~ 457 (1120)
+|++++.|+.|.+||.++|+.+.+ +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 699999999999999999998764 22233 4688999999999999 45788999999 7
Q ss_pred Cceeeeeeeeccc-ccCeEEEEEcCCCCceEEEEecC-CCcEEEEECCCCceeEEeec------cccCeEEEeeccCCCc
Q 001224 458 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI 529 (1120)
Q Consensus 458 ~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~ 529 (1120)
|+.+.. +..+ ...+.++.+.++|+ ++++.+. ++.|..+|. +|+.+..+.. +......+++ .++|
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 776653 4333 34688999999999 6777766 777888884 7888777642 1122333333 5677
Q ss_pred eEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001224 530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 609 (1120)
Q Consensus 530 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 609 (1120)
.++++...++.|..||.. ++.+.++.... .+.+ +...++++.+++++.++.|..+|.
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~---------------------~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFS---------------------SAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCE---------------------EEECTTSCEEEECBTTSEEEEECT
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-Cccc---------------------eeEcCCCCEEEEeCCCCeEEEEeC
Confidence 899999999999999987 67666665432 1222 344555667888888889999999
Q ss_pred CCCceeEEEecCC----CCCCcCeEEEcCCCCEEEEEECC--------CcEEEEEccCcchhhhhc
Q 001224 610 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND--------NGIKILATSDGIRLLRTF 663 (1120)
Q Consensus 610 ~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~ 663 (1120)
.+|+.+..+.... ....+..++..++|.++++.... +..+++.+....+.+..+
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence 9999999886321 12336778889999998887532 234566663332444444
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=1.1e-10 Score=130.43 Aligned_cols=207 Identities=12% Similarity=0.082 Sum_probs=143.0
Q ss_pred ccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224 827 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 903 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 903 (1120)
...++++|||++++++. ++.|.+.|+.+++.+.++.... +....|++.+.+++.+.||.+.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 44578899999888875 3689999999999888876422 1334453446666677788888888765554422
Q ss_pred ----ecccccce-EEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC----CCCCCCcEEEEccCCcEEE
Q 001224 904 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHFL 974 (1120)
Q Consensus 904 ----l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~fspdg~~la 974 (1120)
+.....++ ..+.|++++..++..+..+.|.+.|+.................. ........++++||++.+.
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 22222222 23578999988877788899999998664321111111110000 0001234579999998877
Q ss_pred EEe-----------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224 975 VVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 975 ~~~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+.. .+.|.++|..+.+.+..+... ....+++|+|||+ +++++. .++.|.|+|+.+++.+.++.
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 742 247999999999999988753 3689999999999 888888 58999999999999998873
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.38 E-value=3.2e-11 Score=149.21 Aligned_cols=282 Identities=12% Similarity=0.064 Sum_probs=172.9
Q ss_pred cCCCcceeeccCCC---cceeeecccCC-CCccceeeccC---CccccccEEEEEEcCCCceEEEeccC-----ceEEEe
Q 001224 717 LADVKPRITEESND---KSKVWKLTELS-EPNQCRSLRLP---ENLRATKISRLIFTNSGNAILALASN-----AIHLLW 784 (1120)
Q Consensus 717 ~~~~~~l~~~~~d~---~i~vw~~~~~~-~~~~~~~~~~~---~~~~~~~i~~l~~s~~g~~l~~~~~d-----g~i~vw 784 (1120)
.+++++++....++ ...+|...... .......+.-+ ..++...+..++|||||+.|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 47787776555443 35667665320 00111111101 12233578899999999998877654 346666
Q ss_pred eecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCc--------------EEE
Q 001224 785 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK--------------ISL 849 (1120)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~--------------i~v 849 (1120)
|+ .+|..+.... +...+..++|+|| +.|+.++ ++. |++
T Consensus 195 dl----------------------~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 247 (741)
T 1yr2_A 195 GV----------------------ADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL 247 (741)
T ss_dssp ET----------------------TTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE
T ss_pred EC----------------------CCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE
Confidence 65 4444332111 1122357899999 9888876 433 899
Q ss_pred EEcCCCce--eeeec--CCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeecc--eeeEeecccccceEEEEEcc
Q 001224 850 FNMMTFKT--MATFM--PPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD--EVKSKLKGHSKRITGLAFSH 918 (1120)
Q Consensus 850 wd~~~~~~--~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~ 918 (1120)
|++.++.. ...+. .+...+..+.||| ||++|+..+.++ .|++||+.++ +....+..+...+.... +|
T Consensus 248 ~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~ 325 (741)
T 1yr2_A 248 HRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG 325 (741)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE
T ss_pred EECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec
Confidence 99987652 22232 2333588999999 898888777554 8999999887 31456666665555553 48
Q ss_pred CCCEEEEEeCC----CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcC-Cceee
Q 001224 919 ALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECV 992 (1120)
Q Consensus 919 d~~~l~s~s~D----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~-~~~~~ 992 (1120)
+|+.|+..+.+ +.|.+||++++. .. .......+. ..+..+.++ ++.++++ ..|+..+||.+. ++...
T Consensus 326 dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 326 VGDQLWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp ETTEEEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 99988877764 449999988743 11 112222222 235567776 4555555 477776666554 35555
Q ss_pred eccccCCCCCCeeEEEECCCCcEEEEEE----cCCcEEEEEcCCcce
Q 001224 993 KQWVPRESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1035 (1120)
Q Consensus 993 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~----~Dg~v~iwd~~~~~~ 1035 (1120)
..+.. .+.+.|..++++||++.|+... ..++|++||+.+++.
T Consensus 399 ~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 399 GAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 54442 2356789999999998666332 347899999998874
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.36 E-value=1.6e-09 Score=117.87 Aligned_cols=278 Identities=8% Similarity=0.041 Sum_probs=186.5
Q ss_pred ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
....+.++++.++|+..++...++.|.+|+.. +......+.. ....+.+++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--PDAKVMCLIVSSL 72 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--TTCCEEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--CCCcceeEEECCC
Confidence 34678899999999977777677888887652 1111111111 3456889999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceee-eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE-eecccccceE
Q 001224 836 DSYVMSAS-GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT 912 (1120)
Q Consensus 836 ~~~l~~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~ 912 (1120)
|+..++.. ++.|..||.. ++... .+......+.++++++ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 98777766 6889999987 55432 2232346789999999 88888777668899999977 55442 2333456789
Q ss_pred EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee
Q 001224 913 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 991 (1120)
Q Consensus 913 ~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~ 991 (1120)
++++.++|++.++...++.|..|+. +++.. .... .... ..+..++++++|.+.++. ..+.|.+|+. +++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~~-~~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLE---EYPL-PTNA---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEEC-SSTT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEE---EeeC-CCCC---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 9999999997777766788999988 43321 1111 1111 356899999999877775 4568999998 4544
Q ss_pred eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224 992 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus 992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
... ....+...+.+++++++|++.++...++.|..||. +++.. .+. .+.+ . -.+.++++++ ++++.++
T Consensus 221 ~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~--~~~~~i~~~~-~g~l~v~ 288 (300)
T 2qc5_A 221 SEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--N--AEPHGITFGK-DGSVWFA 288 (300)
T ss_dssp EEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--T--CCCCCEEECT-TSCEEEE
T ss_pred EEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--C--CccceeEeCC-CCCEEEE
Confidence 332 22234567899999999997776666789999998 45443 222 1211 1 1233788888 5665555
Q ss_pred EeCCCcEEEEecC
Q 001224 1072 GLSDGGVHVFEPL 1084 (1120)
Q Consensus 1072 ~~~Dg~v~vW~~~ 1084 (1120)
.. . .|..+++.
T Consensus 289 ~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LK-C-KIGKLNLN 299 (300)
T ss_dssp CS-S-EEEEEEEC
T ss_pred cc-C-ceEEeCCC
Confidence 44 4 67766653
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=2.9e-10 Score=124.74 Aligned_cols=256 Identities=13% Similarity=0.084 Sum_probs=161.0
Q ss_pred cCCCCceEEEEecCCCeEEEE-------EeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224 362 NQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 434 (1120)
Q Consensus 362 ~h~~~v~~v~~spdg~~lla~-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 434 (1120)
..-....+++|+++|. ++++ +..++.|.+||..+++.... .. . ...++...+.++++
T Consensus 15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~-----~---------~~~~~~~~~~~i~~ 78 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK-----P---------EVNGYGGIPAGCQC 78 (314)
T ss_dssp CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE-EC-----C---------EETTEECCEEEEEE
T ss_pred ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee-----c---------ccCCCCCCCceEEE
Confidence 3445678999999998 5666 56789999999988775421 00 0 01234467999999
Q ss_pred cCC-CCeEEEEECCCeEEEEEccCCceeeeeeee-cc-cccCeEEEEEcCCCCceEEEEecCC---------------Cc
Q 001224 435 SPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DA-HVGGVNDIAFSHPNKQLCVITCGDD---------------KT 496 (1120)
Q Consensus 435 spd-g~~las~~~dg~v~iwd~~~~~~~~~~~~l-~~-h~~~V~~v~~s~d~~~~~l~s~s~d---------------~~ 496 (1120)
+++ |+++++.. .+.|.+||.+ ++........ .+ ....+.+++++++|. ++++...+ +.
T Consensus 79 ~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 79 DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCe
Confidence 999 66555444 4479999998 6533210111 11 224589999999998 55665544 56
Q ss_pred EEEEECCCCceeEEeeccccCeEEEeec--cCCCceEEEEE-ecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224 497 IKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 573 (1120)
Q Consensus 497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 573 (1120)
|..||.. ++..... .+......++++ .+++++.++.+ ..++.|.+||......... ...+.-.+.
T Consensus 155 l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~-------~~~~~~~~~--- 222 (314)
T 1pjx_A 155 IYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-------KKVWGHIPG--- 222 (314)
T ss_dssp EEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-------EEEEEECCC---
T ss_pred EEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc-------ceEEEECCC---
Confidence 7777765 5544332 233456777775 12555555444 5678999998762111100 000000000
Q ss_pred EEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEE
Q 001224 574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILA 652 (1120)
Q Consensus 574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd 652 (1120)
+.......++++++|+.+++...++.|.+||..+++.+..+..+. ..+.+++|+++|+.|++++ .++.|..|+
T Consensus 223 ----~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 223 ----THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp ----CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ----CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 000134456777777777777788999999998788777766442 3688999999999555554 567899998
Q ss_pred ccC
Q 001224 653 TSD 655 (1120)
Q Consensus 653 ~~~ 655 (1120)
+..
T Consensus 297 ~~~ 299 (314)
T 1pjx_A 297 WQR 299 (314)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.34 E-value=2.3e-11 Score=150.50 Aligned_cols=244 Identities=10% Similarity=-0.011 Sum_probs=153.8
Q ss_pred CCCceEEEEecCCCeEEEEEeCCC----cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
...+..++|||||++|+.+.+.+| +|++||+.+++.+.. . .+...+..++|||| +
T Consensus 162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-------------------~~~~~~~~~~wspD-~ 220 (741)
T 1yr2_A 162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-------------------LKWVKFSGLAWLGN-D 220 (741)
T ss_dssp -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-------------------EEEEESCCCEESTT-S
T ss_pred CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-------------------CCCceeccEEEECC-C
Confidence 346889999999997555554444 599999999986542 0 01112357899999 9
Q ss_pred eEEEEECCCe--------------EEEEEccCCcee-eeeeeecccccCeEEEEEcCCCCceEEEEecC-----CCcEEE
Q 001224 440 LFGVAYSRHI--------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKTIKV 499 (1120)
Q Consensus 440 ~las~~~dg~--------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~-----d~~i~v 499 (1120)
.|+.++.++. |.+|++.++... ........|...+..+.|||||+. |+..+. ...|++
T Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~~ 298 (741)
T 1yr2_A 221 ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVHV 298 (741)
T ss_dssp EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEEE
T ss_pred EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEEE
Confidence 9999887654 889999877521 112222334446899999999995 444443 348999
Q ss_pred EECCCC--ceeEEeeccccCeEEEeeccCCCceEEEEEec----CCeEEEEecCCCC-Cceee-eCCCCceeEEEEcCCC
Q 001224 500 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLG-SRVDY-EAPGRWCTTMAYSADG 571 (1120)
Q Consensus 500 wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~-~~~~~~v~~~~~s~~g 571 (1120)
||+.++ ++...+..+...+....+ ++|..|+..+. ++.|.+||+.+.. ....+ ..+...
T Consensus 299 ~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~---------- 365 (741)
T 1yr2_A 299 ARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN---------- 365 (741)
T ss_dssp EEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE----------
T ss_pred EECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe----------
Confidence 999887 424556555555554432 34456666654 3458999987632 11211 111112
Q ss_pred CeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE----CCC
Q 001224 572 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----NDN 646 (1120)
Q Consensus 572 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg 646 (1120)
+..+.++ ++..+++...|+..++|.+. ++.....+..+. ...+..++++|+++.++... ..+
T Consensus 366 -----------l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~ 432 (741)
T 1yr2_A 366 -----------LESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPA 432 (741)
T ss_dssp -----------EEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred -----------EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 2223333 33456777888887777554 455566655322 23577889999987666432 247
Q ss_pred cEEEEEccCc
Q 001224 647 GIKILATSDG 656 (1120)
Q Consensus 647 ~i~iwd~~~~ 656 (1120)
+|++||+.++
T Consensus 433 ~i~~~d~~tg 442 (741)
T 1yr2_A 433 TVLALDPATA 442 (741)
T ss_dssp EEEEEETTTT
T ss_pred EEEEEECCCC
Confidence 8999998876
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.33 E-value=3.8e-09 Score=114.74 Aligned_cols=238 Identities=11% Similarity=0.012 Sum_probs=161.2
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
....+.+++++++|+ +.++...++.|.+||.. ++.... .+..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence 456889999999999 56666678999999988 553321 0222345789999999999888
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE-EeeccccCeEEE
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV 521 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~ 521 (1120)
+...++.|..||.. ++... ..+......+.++++.++|. ++++...++.|..||.. ++... .+......+..+
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999988 54321 22333446799999999998 67777768899999987 65543 233344567788
Q ss_pred eeccCCCceEEEEEecCCeEEEEecCCCCCceeee--CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
++. +++.+.++...++.|..||. +.. ...+. .... ....++++++++.+++..
T Consensus 152 ~~d--~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~---------------------~~~~i~~d~~g~l~v~~~ 206 (300)
T 2qc5_A 152 TLG--SDNALWFTENQNNSIGRITN-TGK-LEEYPLPTNAA---------------------APVGITSGNDGALWFVEI 206 (300)
T ss_dssp EEC--TTSSEEEEETTTTEEEEECT-TCC-EEEEECSSTTC---------------------CEEEEEECTTSSEEEEET
T ss_pred EEC--CCCCEEEEecCCCeEEEECC-CCc-EEEeeCCCCCC---------------------CcceEEECCCCCEEEEcc
Confidence 864 45566666666788988987 322 11111 1111 344555666666666666
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224 600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 653 (1120)
..+.|.+||. +++.... ........+.+++++++|+++++...++.|..|+.
T Consensus 207 ~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 207 MGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 6778999998 5554332 22222345788999999987776656788888876
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.30 E-value=2.3e-10 Score=125.61 Aligned_cols=245 Identities=8% Similarity=0.041 Sum_probs=161.1
Q ss_pred ccEEEEEEcCCCceEEE-------eccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC-CCCCCCCccE
Q 001224 758 TKISRLIFTNSGNAILA-------LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT-DSNPEEAVPC 829 (1120)
Q Consensus 758 ~~i~~l~~s~~g~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~-~~~~~~~v~~ 829 (1120)
....+++|+++|..+++ ...++.|.+|+... ++....... ..++...+.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~----------------------g~~~~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------------GKKTVICKPEVNGYGGIPAG 75 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------------CCEEEEECCEETTEECCEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC----------------------CcEEEEEecccCCCCCCCce
Confidence 34568899999987776 56678888876532 221111000 0013356889
Q ss_pred EEEccC-CCEEEEEeCCcEEEEEcCCCceeee-ecC----CCCCeEEEEEecCCCcEEEEEeCC---------------C
Q 001224 830 FALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMP----PPPAATFLAFHPQDNNIIAIGMDD---------------S 888 (1120)
Q Consensus 830 l~~s~d-~~~l~~~sdg~i~vwd~~~~~~~~~-~~~----~~~~i~~l~~sp~d~~~lasg~~d---------------g 888 (1120)
++++++ |+++++...+.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 766665556689999988 665433 221 123588999999 78877766554 4
Q ss_pred cEEEEEeecceeeEeecccccceEEEEEc----cCCCEEE-EEeCCCCEEEEECC-CcccccceeeeccCCCCCCCCCCc
Q 001224 889 SIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNVLV-SSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDT 962 (1120)
Q Consensus 889 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~l~-s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~~~~~~~~~i~ 962 (1120)
.|..|+.. ++.. .+..+......++|+ ++++.|. +...++.|.+|+++ .++...........++. ...+.
T Consensus 154 ~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGAD 229 (314)
T ss_dssp EEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEE
T ss_pred eEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCC
Confidence 56666654 4433 333344557889999 9997654 44567899999986 33322122222222221 02457
Q ss_pred EEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEE-EcCCcEEEEEcCC
Q 001224 963 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAAN 1032 (1120)
Q Consensus 963 ~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~Dg~v~iwd~~~ 1032 (1120)
.++++++|.++++. .++.|.+||..+++.+..+. .+...+.+++|++||++|+++ ..++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999988875 67899999998777665554 345789999999999965555 4567899999864
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.28 E-value=8e-10 Score=120.44 Aligned_cols=239 Identities=12% Similarity=0.061 Sum_probs=155.4
Q ss_pred eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437 (1120)
Q Consensus 358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 437 (1120)
..+..+.......+|+|+|+.|++++..++.|..|+. +++... +..+...+..++++++
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~d 96 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQ 96 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCC
Confidence 3344466778899999999988999999999999998 444221 2234567899999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeeccc-ccCeEEEEEcCCCCceEEEE----ecC-------------CCcEEE
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKV 499 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s----~s~-------------d~~i~v 499 (1120)
|+++++...++.|.+|+.+ ++.........+. ...+..+++.++|. +++| |.. .+.|..
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~ 173 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYR 173 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEE
Confidence 9977766666889999986 4422111111121 23577899999998 5665 332 256788
Q ss_pred EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecC------CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224 500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 573 (1120)
Q Consensus 500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 573 (1120)
||..+++..... .......++|++ ++..|+.+... +.|.+|++.... .... +
T Consensus 174 ~d~~~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-----------------~ 231 (305)
T 3dr2_A 174 LPPDGSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-----------------R 231 (305)
T ss_dssp ECSSSCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE-EEEE-----------------E
T ss_pred EcCCCCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-----------------e
Confidence 887677654433 344567788754 55666666554 689999886533 1100 0
Q ss_pred EEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcE
Q 001224 574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 648 (1120)
Q Consensus 574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 648 (1120)
.+..........++++++|+ |.++..+ .|.+|+. .++.+..+.... .+.+++|+++++.|.+++.++..
T Consensus 232 ~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 232 HFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp EEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEE
T ss_pred EEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEE
Confidence 00000011223466777777 4444444 5999998 577777776543 37889999999999888876433
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=2e-09 Score=121.96 Aligned_cols=255 Identities=10% Similarity=0.041 Sum_probs=164.9
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 444 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 444 (1120)
.....|+|+|+|+ |+++...++.|++||..+++.... ... ..... ++|+|++++|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 788888889999999988765431 112 22233 9999999999998
Q ss_pred ECCC--eEEEEEccCCceeeeeeeecc-cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE----eeccccC
Q 001224 445 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP 517 (1120)
Q Consensus 445 ~~dg--~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~----~~~h~~~ 517 (1120)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 799999887654332211222 4567889999996553 33366688999999887764332 2222222
Q ss_pred e--EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224 518 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 595 (1120)
Q Consensus 518 v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l 595 (1120)
- ..++|++. ++.++++-...+.|+.|+.+.. ...+...... .. ..+|. .....-.....++++++|+.+
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~-~g---~~dg~--~~~~~~~~P~gia~d~dG~ly 337 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQ-KT---VQDGL--REEALFAQPNGMTVDEDGNFY 337 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTC-CS---CBCEE--GGGCBCSSEEEEEECTTCCEE
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCC-CC---cCCCc--ccccEeCCCeEEEEeCCCCEE
Confidence 2 27888653 3466777777889999987642 2222111100 00 00000 000001134567888888877
Q ss_pred EEEe-CCCeEEEEECCCCceeEEEecCC-------------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224 596 LAAG-DDFSIKFWDMDSVQLLTSIDADG-------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT 653 (1120)
Q Consensus 596 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 653 (1120)
++-+ .++.|+.|++.++... .+.+.. .......++++++|.++++-..++.|+.+++
T Consensus 338 vad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 7777 8899999998777643 333221 1234678999999888888888888888765
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.26 E-value=5.7e-10 Score=124.61 Aligned_cols=256 Identities=12% Similarity=0.100 Sum_probs=165.4
Q ss_pred cCCCeEEEEEeCC----CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE----
Q 001224 374 PVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY---- 445 (1120)
Q Consensus 374 pdg~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---- 445 (1120)
|++++++++...+ +.|.+.|..+++.+.+.+. + ..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v------------------G-~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG------------------G-FLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------C-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC------------------C-CCC--ceEECCCCCEEEEEecccc
Confidence 4666666665544 7999999999998875321 2 224 799999999998876
Q ss_pred ------CCCeEEEEEccCCceeeeeeeec--c---cccCeEEEEEcCCCCceEEEEec--CCCcEEEEECCCCceeEEee
Q 001224 446 ------SRHIVQIYSYHGGDEVRQHLEID--A---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFE 512 (1120)
Q Consensus 446 ------~dg~v~iwd~~~~~~~~~~~~l~--~---h~~~V~~v~~s~d~~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~ 512 (1120)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 46789999999998765432 22 0 1123567899999996 44433 36889999999999998886
Q ss_pred ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee----eeCCCCce-eEEEEcCCCCeEEeccc--------
Q 001224 513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD----YEAPGRWC-TTMAYSADGTRTYQGFR-------- 579 (1120)
Q Consensus 513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v-~~~~~s~~g~~~~~~~~-------- 579 (1120)
.-.. ....+... ..+++.+.||.+.+.+..+.+.... +......+ ..+.+.+++..++....
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence 4211 11122222 3555666777777777733322211 11111110 11233444332211100
Q ss_pred -------------------------ccceeEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeEEEecCCCC
Q 001224 580 -------------------------KRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGGL 624 (1120)
Q Consensus 580 -------------------------~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~ 624 (1120)
......++++|+++++++... ++.|.++|..+.+.+..+....
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-- 370 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-- 370 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--
Confidence 001112678888887777542 3579999999999999887543
Q ss_pred CCcCeEEEcCCCC-EEEEEE-CCCcEEEEEccCcchhhhh
Q 001224 625 PASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRT 662 (1120)
Q Consensus 625 ~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 662 (1120)
....++|+|||+ ++++.. .++.|.++|+.++ +.++.
T Consensus 371 -~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~t 408 (426)
T 3c75_H 371 -EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRS 408 (426)
T ss_dssp -EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEE
T ss_pred -CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEE
Confidence 378899999999 888888 5899999999988 44444
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=1.8e-09 Score=117.17 Aligned_cols=236 Identities=11% Similarity=0.085 Sum_probs=153.0
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 444 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 444 (1120)
.-..+..|+|++..|+++...++.|..||..+++... + .....+.+++++++|+++++
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~- 70 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVAT- 70 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEE-
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEE-
Confidence 4456889999877788888889999999998876432 0 13457999999999996555
Q ss_pred ECCCeEEEEEccCCceeeeeeeecc--cccCeEEEEEcCCCCceEEEEe-cC--------CCcEEEEECCCCceeEEeec
Q 001224 445 YSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITC-GD--------DKTIKVWDATNGAKQYIFEG 513 (1120)
Q Consensus 445 ~~dg~v~iwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~-s~--------d~~i~vwd~~~~~~~~~~~~ 513 (1120)
. ++.|.+||.++++.. ....... ....++.++++|+|+ ++++. .. .....||.+.....+..+..
T Consensus 71 ~-~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 146 (297)
T 3g4e_A 71 I-GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD 146 (297)
T ss_dssp E-TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE
T ss_pred E-CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEee
Confidence 3 567999999887643 2222211 124588999999998 44443 22 13345665543222333333
Q ss_pred cccCeEEEeeccCCCceEE-EEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224 514 HEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 591 (1120)
Q Consensus 514 h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~ 591 (1120)
+......++|++ +++.| ++.+.++.|.+|+++. ....... .+... ..........++++++
T Consensus 147 ~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~~~~~-------~~~~~~~p~g~~~d~~ 209 (297)
T 3g4e_A 147 QVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNR--------RSVYK-------LEKEEQIPDGMCIDAE 209 (297)
T ss_dssp EESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEE--------EEEEE-------CCGGGCEEEEEEEBTT
T ss_pred ccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCc--------EEEEE-------CCCCCCCCCeeEECCC
Confidence 444567788865 44555 5556678999998752 1111100 00000 0001123455777778
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc-CCCCEEEEEECC
Q 001224 592 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND 645 (1120)
Q Consensus 592 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d 645 (1120)
|+..++...++.|.+||..+++.+..+.... ..+++++|. |+++.|++.+..
T Consensus 210 G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 210 GKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred CCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcCC
Confidence 7777777788899999999999888887553 368999998 888887776653
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=1.3e-09 Score=123.48 Aligned_cols=248 Identities=8% Similarity=-0.006 Sum_probs=163.0
Q ss_pred CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEeecceee
Q 001224 825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 901 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~ 901 (1120)
.....++++++++++++.. ++.|++||..++........ ..... ++|++ +++.|+++..++ .|.+|+...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578899999998766666 68999999988776555443 23334 99999 788888887766 7888887765443
Q ss_pred Eee----cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeec--cCCCCCCCCCCc-EEEEccC-CcEE
Q 001224 902 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTPTAQSDT-RVQFHQD-QIHF 973 (1120)
Q Consensus 902 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--~~~~~~~~~~i~-~~~fspd-g~~l 973 (1120)
..+ ..+...+.+++++|++..|..+..++.|+.||..++... .+.. ..+... .... .++|+|+ +.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~---~~~~~~~~g~~~--~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---LIKQLELSGSLG--TNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE---EEEECCCCSCCC--CSSCCEEEEETTTTEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE---EEecccccCCCC--CCccccEEEeCCCCEEE
Confidence 333 225567889999995555555777889999999875421 1111 111111 1113 9999996 5544
Q ss_pred EEE-eCCeEEEEEcCCceeeeccccCC-------------CCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeee
Q 001224 974 LVV-HETQLAIFETTKLECVKQWVPRE-------------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCR 1038 (1120)
Q Consensus 974 a~~-~d~~v~i~d~~~~~~~~~~~~~~-------------h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~ 1038 (1120)
++. .++.|+.|+.... +..+.... .-.....++|+++|+++++-+ .++.|+.|++.+++....
T Consensus 283 v~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~ 360 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV 360 (409)
T ss_dssp EEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred EEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence 443 5678999987643 22221100 124588999999999777777 789999999888875533
Q ss_pred eCCCcc--cCCCC--CCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224 1039 INPSAY--LPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus 1039 ~~~~~~--~~~g~--~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
...... ...|. ...--.|..++++| ++.++++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 221000 00010 01113467899999 4788888888888888775
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.24 E-value=1.6e-10 Score=128.19 Aligned_cols=271 Identities=8% Similarity=-0.015 Sum_probs=174.5
Q ss_pred ccEEEEEEcCCCceEEEecc--CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224 758 TKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 835 (1120)
Q Consensus 758 ~~i~~l~~s~~g~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d 835 (1120)
..+..++++++|+.+++... ++.++||.+.. +... -|. ... .....+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~------~~p--~~~-----~~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI------PFP--PQS-----GNAIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE------ESC--CCC-----SSCCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee------cCC--Ccc-----cCcccceeEeeEEEEcCC
Confidence 46789999999998777532 34366776631 1110 010 000 001125567899999999
Q ss_pred CCEEEEEe------CCcEEEEEcCCCceeeeecCC------CCCeEEEEEecCCCcEEEEEe---CCCcEEEEEeeccee
Q 001224 836 DSYVMSAS------GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV 900 (1120)
Q Consensus 836 ~~~l~~~s------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg~---~dg~v~vwd~~~~~~ 900 (1120)
++++++.. ++.|.+||+.+++.+..+... ...+..++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98666543 378999999988877665432 235689999984455556555 678999999998887
Q ss_pred eEeecccccceE-EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eC
Q 001224 901 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 978 (1120)
Q Consensus 901 ~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d 978 (1120)
...+.+|..... ...++.+|..+.+.+.|+.++.|.. .+..++|+|||+.|+++ ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence 777766533211 1455667888888888888766632 24679999999988875 33
Q ss_pred C-eEEEEEcCC---c-----eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCC
Q 001224 979 T-QLAIFETTK---L-----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049 (1120)
Q Consensus 979 ~-~v~i~d~~~---~-----~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~ 1049 (1120)
+ .+..++... + +....+...++......++++++|.++++...++.|.+||..+++...... .+.
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~~-- 289 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DEK-- 289 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CGG--
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CCc--
Confidence 3 454444321 0 001111111234466789999999999988889999999986676543322 111
Q ss_pred CCCCccceEEEecCCCCCEEEEEeCCCcEE
Q 001224 1050 SSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1079 (1120)
Q Consensus 1050 ~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~ 1079 (1120)
...|..++|.+ ++.++++.+..+.+.
T Consensus 290 ---~~~p~~va~~~-~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 290 ---LSWTDSFNFGS-DGYLYFDCNQLHHSA 315 (343)
T ss_dssp ---GSCEEEEEECT-TSCEEEEECCGGGSG
T ss_pred ---eecCCeeEECC-CCcEEEEeCcccccc
Confidence 13466899998 577777776554443
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=1.3e-09 Score=118.15 Aligned_cols=229 Identities=11% Similarity=0.069 Sum_probs=149.8
Q ss_pred cEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224 759 KISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 837 (1120)
Q Consensus 759 ~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~ 837 (1120)
-..+..|++++. .+++...++.|..|+.. ++...... ....+.+++++++|+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~----------------------~~~~~~~~-----~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSF----------------------TKQVQRVT-----MDAPVSSVALRQSGG 66 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETT----------------------TCCEEEEE-----CSSCEEEEEEBTTSS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECC----------------------CCcEEEEe-----CCCceEEEEECCCCC
Confidence 345788888644 45555567888877753 22221110 345688999999999
Q ss_pred EEEEEeCCcEEEEEcCCCceeeeecC----CCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEEeecceeeEee
Q 001224 838 YVMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVKSKL 904 (1120)
Q Consensus 838 ~l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~d---------g~v~vwd~~~~~~~~~l 904 (1120)
+++ +.++.|.+||..+++....... ....+..++++| +++++++...+ ..-.||.+........+
T Consensus 67 l~v-~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 144 (297)
T 3g4e_A 67 YVA-TIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY 144 (297)
T ss_dssp EEE-EETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE
T ss_pred EEE-EECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE
Confidence 554 4577899999987765332221 123478899999 78876654322 33456665532223333
Q ss_pred cccccceEEEEEccCCCEE-EEEeCCCCEEEEECC--CcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001224 905 KGHSKRITGLAFSHALNVL-VSSGADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 980 (1120)
Q Consensus 905 ~~h~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~ 980 (1120)
..+....+.++|+||++.| ++.+.++.|.+|+++ ++.....+.+....... ..+..++++++|++.++. ..+.
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~~~ 221 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNGGR 221 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETTTE
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCCCE
Confidence 3344556899999999876 455667889999974 44332222222222111 245789999999877775 5678
Q ss_pred EEEEEcCCceeeeccccCCCCCCeeEEEEC-CCCcEEEEEEc
Q 001224 981 LAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFL 1021 (1120)
Q Consensus 981 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~ 1021 (1120)
|..||..+++.+..+.. +...+++++|. ||++.|++++.
T Consensus 222 v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 99999999998887763 35689999998 89887776654
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=1.6e-10 Score=127.07 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=134.2
Q ss_pred CCccEEEEccCCCEEEEEeCCcEEEEEcCCCc-----------eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224 825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 893 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 893 (1120)
..+..+++++...++++|+...+.+|++++.. ..... .+.. |+.++| |+++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999996688889976433 11222 2455 999999 57888888 88999999
Q ss_pred EeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEE
Q 001224 894 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 973 (1120)
Q Consensus 894 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~l 973 (1120)
|+.+.........|...|.++.+.+.. +++++.||.|.+||+..+... ... ..|++++|||+| +.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~-----~~~-------~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK-----QLA-------QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE-----EEE-------ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc-----ccc-------CCceEEEEcCCc-eE
Confidence 998766556667788888888776543 888999999999999975532 111 268999999999 44
Q ss_pred EEEeCCeEEEEEcCCcee--eecccc----C---CCCCCeeEEEECCCCcEEEE
Q 001224 974 LVVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYA 1018 (1120)
Q Consensus 974 a~~~d~~v~i~d~~~~~~--~~~~~~----~---~h~~~v~~l~~s~dg~~l~s 1018 (1120)
+...||.+++|+...+++ .+.+.. . +|...|.+|+|.+++.+|++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 446899999999988775 444421 1 36889999999999999886
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.22 E-value=2.9e-10 Score=125.02 Aligned_cols=197 Identities=9% Similarity=-0.018 Sum_probs=128.6
Q ss_pred ccEEEEccCCCEEEEEe---CCcEEE--EEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec----
Q 001224 827 VPCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---- 897 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~s---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---- 897 (1120)
...++++|||++++++. +..+.+ +|..+ +..+..... ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 44688899999888875 256888 88876 444432111 223453455666677889988888876
Q ss_pred -ceeeEe----ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeecc------CCCCCCCCCCcEEEE
Q 001224 898 -DEVKSK----LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQF 966 (1120)
Q Consensus 898 -~~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~f 966 (1120)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+............ .+..+ .....++|
T Consensus 199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~ 271 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAK 271 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEE
T ss_pred CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEE
Confidence 543321 11112233 3 666676666666 8999999875321111111100 01000 12234789
Q ss_pred ccCCcEEEEE-e-C--------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcE-EEEEE-cCCcEEEEEcCCcc
Q 001224 967 HQDQIHFLVV-H-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACF-LDATVCVFSAANLK 1034 (1120)
Q Consensus 967 spdg~~la~~-~-d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~~-~Dg~v~iwd~~~~~ 1034 (1120)
+||++.+.++ . . +.+.++|+.+.+.+..+... .....|+|+|||++ +++.. .++.|.|+|+.+++
T Consensus 272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 9999988874 3 2 36779999999999888753 36899999999985 45555 48999999999999
Q ss_pred eeeeeC
Q 001224 1035 LRCRIN 1040 (1120)
Q Consensus 1035 ~~~~~~ 1040 (1120)
.+..+.
T Consensus 349 vv~~I~ 354 (368)
T 1mda_H 349 DQSSVE 354 (368)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 998877
No 221
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.21 E-value=2.6e-05 Score=92.58 Aligned_cols=525 Identities=10% Similarity=0.038 Sum_probs=276.3
Q ss_pred EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE-ECCCeEEEEEccC
Q 001224 379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHG 457 (1120)
Q Consensus 379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~dg~v~iwd~~~ 457 (1120)
|+++ ..+.|+.-++++...... +....-..+..|+|++++..|..+ ..++.|..+++++
T Consensus 9 Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g 68 (628)
T 4a0p_A 9 LLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68 (628)
T ss_dssp EEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence 4444 457888889876543221 011123468899999976666654 4578899999886
Q ss_pred CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEE-e
Q 001224 458 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-A 536 (1120)
Q Consensus 458 ~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~ 536 (1120)
..... .+.........+++.+.+.. ++++-...+.|.+.++........+.........+++.+. +|.+.++- +
T Consensus 69 ~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g 143 (628)
T 4a0p_A 69 SALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWG 143 (628)
T ss_dssp CSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECS
T ss_pred CCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCC
Confidence 54221 12222345778999887776 4556667788999997654433333233445677887653 33344433 2
Q ss_pred cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCCcee
Q 001224 537 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLL 615 (1120)
Q Consensus 537 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~ 615 (1120)
..+.|...+++..... .+.........+ ++++++..|+.+ ...+.|...|+.....
T Consensus 144 ~~~~I~r~~~dG~~~~-~l~~~~~~P~Gl---------------------alD~~~~~LY~aD~~~~~I~~~d~dG~~~- 200 (628)
T 4a0p_A 144 GKPKIDRAAMDGSERT-TLVPNVGRANGL---------------------TIDYAKRRLYWTDLDTNLIESSNMLGLNR- 200 (628)
T ss_dssp SSCEEEEEETTSCSCE-EEECSCSSEEEE---------------------EEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CCCEEEEEeCCCCceE-EEECCCCCcceE---------------------EEccccCEEEEEECCCCEEEEEcCCCCce-
Confidence 2456766666543322 221222334444 444443445444 4567888888865443
Q ss_pred EEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001224 616 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 695 (1120)
Q Consensus 616 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1120)
..+... ......+++.. +.++++-...+.|...|..++.. ...+...... +
T Consensus 201 ~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~~~~-------------p------------ 251 (628)
T 4a0p_A 201 EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGHLDY-------------V------------ 251 (628)
T ss_dssp EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECSCCS-------------C------------
T ss_pred EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecCCCC-------------c------------
Confidence 233221 22345677754 34444444577888888766622 2222110000 0
Q ss_pred ccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEc-CCCceEEE
Q 001224 696 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILA 774 (1120)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~ 774 (1120)
..|.++.-........|.. ..+....+++. |.+. ..+
T Consensus 252 ----------------------------------~~i~v~~~~~q~~~n~C~~-------~ng~C~~~C~~~~~~~-~~C 289 (628)
T 4a0p_A 252 ----------------------------------MDILVFHSSRQSGWNECAS-------SNGHCSHLCLAVPVGG-FVC 289 (628)
T ss_dssp ----------------------------------CEEEEECGGGSCCCCTTTT-------TGGGCSSEEEEETTTE-EEE
T ss_pred ----------------------------------ceeeeeeecccccceEecc-------CCCCcchhhhcCCCCC-eeE
Confidence 0011111110000001100 00111112221 2122 122
Q ss_pred eccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCC
Q 001224 775 LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMT 854 (1120)
Q Consensus 775 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~ 854 (1120)
.+..|... .....+|.. ...+++.+....|+-..+..
T Consensus 290 ~C~~g~~l----------------------------------------~~d~~~C~~---~~~~Ll~s~~~~i~~i~l~~ 326 (628)
T 4a0p_A 290 GCPAHYSL----------------------------------------NADNRTCSA---PTTFLLFSQKSAINRMVIDE 326 (628)
T ss_dssp ECSTTCEE----------------------------------------CTTSSCEEC---CSSEEEEEETTEEEEECCCT
T ss_pred EcCCCcEe----------------------------------------cccCCcCcc---ccceeeeeccceEEEEeccc
Confidence 22222110 111222322 23566666667777666653
Q ss_pred Ccee-eeecC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc------cccceEEEEEccCCCEE-EE
Q 001224 855 FKTM-ATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSKRITGLAFSHALNVL-VS 925 (1120)
Q Consensus 855 ~~~~-~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~l-~s 925 (1120)
.... ..+.. .-..+.+++|.+.+++++.+=...+.|+.+++........+.. ....+.+|++...++.| ++
T Consensus 327 ~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~t 406 (628)
T 4a0p_A 327 QQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWT 406 (628)
T ss_dssp TCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEE
T ss_pred ccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEE
Confidence 3211 12221 2345889999995555555544567888887654332222322 23467899998876655 46
Q ss_pred EeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc-CCcEEEE-EeCC--eEEEEEcCCceeeeccccCCCC
Q 001224 926 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHET--QLAIFETTKLECVKQWVPRESS 1001 (1120)
Q Consensus 926 ~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp-dg~~la~-~~d~--~v~i~d~~~~~~~~~~~~~~h~ 1001 (1120)
-+..+.|.+.+++.. ... .... ... .....+++.| .|.++.+ .... .|...+++.... ..+.. ..-
T Consensus 407 d~~~~~I~v~~~~G~-~~~-~l~~-~~l-----~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~-~~l 476 (628)
T 4a0p_A 407 CEATNVINVTRLDGR-SVG-VVLK-GEQ-----DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFF-SGL 476 (628)
T ss_dssp ETTTTEEEEEETTSC-EEE-EEEE-CTT-----CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEEC-SSC
T ss_pred cCCCCEEEEEECCCC-eEE-EEEe-CCC-----CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEe-ccC
Confidence 666788999988752 111 1111 111 2468999999 5665555 2333 566666653332 22221 224
Q ss_pred CCeeEEEECCCCcEEEEEEc-CCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEE
Q 001224 1002 APITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1080 (1120)
Q Consensus 1002 ~~v~~l~~s~dg~~l~s~~~-Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~v 1080 (1120)
.....|++.++++.|+.+.. .+.|...+++... ...+.. + ....|.+++... +.++.+-...+.|..
T Consensus 477 ~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~------~---~~~~P~glav~~--~~ly~tD~~~~~i~~ 544 (628)
T 4a0p_A 477 SKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLED------S---NILQPVGLTVFE--NWLYWIDKQQQMIEK 544 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC------S---SCSCEEEEEEET--TEEEEEETTTTEEEE
T ss_pred CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEc------C---CCCCcEEEEEEC--CEEEEEECCCCeEEE
Confidence 56799999998877776654 4789999986543 333321 0 112355777764 456666666678888
Q ss_pred EecCCCC
Q 001224 1081 FEPLESE 1087 (1120)
Q Consensus 1081 W~~~~~~ 1087 (1120)
.+..+|+
T Consensus 545 ~~k~~G~ 551 (628)
T 4a0p_A 545 IDMTGRE 551 (628)
T ss_dssp EETTSSS
T ss_pred EECcCCC
Confidence 8877766
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.18 E-value=2.1e-09 Score=131.57 Aligned_cols=245 Identities=13% Similarity=0.105 Sum_probs=154.4
Q ss_pred CCCCceEEEEecCCCeEEEEEeCC----CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 438 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 438 (1120)
|...+..++|||||++|+.+.+.. .+|+|||+++|+.+.. . + +......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-CC
Confidence 445788899999999755554433 4799999999986542 0 0 11113568999 99
Q ss_pred CeEEEEECCC-------------eEEEEEccCCcee-eeeeeecc-cccCeEEEEEcCCCCceEEEEec---CCCcEEEE
Q 001224 439 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG---DDKTIKVW 500 (1120)
Q Consensus 439 ~~las~~~dg-------------~v~iwd~~~~~~~-~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s---~d~~i~vw 500 (1120)
+.|+.++.+. .|++|++.++..- ........ |...+..+.|+|||+.+ +++.+ .+..|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998774 3999999876531 12223334 55568899999999963 33333 23589999
Q ss_pred ECCCCc-eeEEeeccccCeEEEeeccCCCceEEEEEecC---CeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeE
Q 001224 501 DATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT 574 (1120)
Q Consensus 501 d~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~ 574 (1120)
|+.++. ....+..+....... +.+.. +.+++....+ +.|..+|+.+... ...+..+...+.
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~----------- 331 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL----------- 331 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-----------
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-----------
Confidence 998764 455666666665554 33332 3455555443 5788888876543 122222222221
Q ss_pred EecccccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC----Cc
Q 001224 575 YQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NG 647 (1120)
Q Consensus 575 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~ 647 (1120)
.++++++.|+.... ++ .|++|++..+ ....+.... ...+..+.+++++..++....+ ++
T Consensus 332 ------------~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 332 ------------TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp ------------EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred ------------EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCE
Confidence 45555566766554 44 6899998754 444444322 2245567778888877766554 78
Q ss_pred EEEEEccCc
Q 001224 648 IKILATSDG 656 (1120)
Q Consensus 648 i~iwd~~~~ 656 (1120)
+..||+.++
T Consensus 398 l~~~d~~~g 406 (693)
T 3iuj_A 398 LYRFEPKSG 406 (693)
T ss_dssp EEEECTTTC
T ss_pred EEEEECCCC
Confidence 999988766
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.17 E-value=1.8e-09 Score=119.66 Aligned_cols=248 Identities=13% Similarity=0.052 Sum_probs=146.3
Q ss_pred CCceEEEEecCCCeEEEEEe--CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 365 SSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
..+..|+++|+|+ ++++.. .++.+.||.+.+++.. .+.-|. ....+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6889999999999 566653 2343666666555432 121111 01235667899999999998777
Q ss_pred EEEC-----CCeEEEEEccCCceeeeeeeec----ccccCeEEEEEcCCCCceEEEEec---CCCcEEEEECCCCceeEE
Q 001224 443 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI 510 (1120)
Q Consensus 443 s~~~-----dg~v~iwd~~~~~~~~~~~~l~----~h~~~V~~v~~s~d~~~~~l~s~s---~d~~i~vwd~~~~~~~~~ 510 (1120)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999998855422 221 22345789999987654 456655 678999999998887776
Q ss_pred eeccccCeE-EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecc-----------
Q 001224 511 FEGHEAPVY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF----------- 578 (1120)
Q Consensus 511 ~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~----------- 578 (1120)
+.+|..... ...+ ..+|..+.+.+.++.++.|.. .+..++++|+|+.++...
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 655421100 0000 011222333333333322210 122333333332222110
Q ss_pred ---------------------cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC
Q 001224 579 ---------------------RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 637 (1120)
Q Consensus 579 ---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 637 (1120)
.......++++++|+.+++...++.|.+||..+++...... ........+++|.+++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSC
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeEECCCCc
Confidence 00123347788888888888889999999986666433332 21233577899999988
Q ss_pred EEEEEECC
Q 001224 638 LLAVSTND 645 (1120)
Q Consensus 638 ~l~~~~~d 645 (1120)
++++....
T Consensus 304 l~v~~~~~ 311 (343)
T 2qe8_A 304 LYFDCNQL 311 (343)
T ss_dssp EEEEECCG
T ss_pred EEEEeCcc
Confidence 77776543
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.17 E-value=1.1e-08 Score=112.29 Aligned_cols=228 Identities=12% Similarity=0.020 Sum_probs=146.7
Q ss_pred CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE
Q 001224 366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 445 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 445 (1120)
-..+.+|+|++..+++++..++.|..||..+++... +. ....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence 346789999987788888889999999998876432 11 23479999999999987765
Q ss_pred CCCeEEEEEccCCceeeeeeeecc-c-ccCeEEEEEcCCCCceEEEEecC------CCcEEEEECCCCceeEEeeccccC
Q 001224 446 SRHIVQIYSYHGGDEVRQHLEIDA-H-VGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAP 517 (1120)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~~~l~~-h-~~~V~~v~~s~d~~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~h~~~ 517 (1120)
.+ .|.+||..+++... ...... + ...+.+++++|+|+ ++++... .+.|..+| +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999998876432 212111 1 24689999999998 4444332 24455555 55543 33333345
Q ss_pred eEEEeeccCCCceEE-EEEecCCeEEEEecC--CC-CCc--eeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224 518 VYSVCPHHKENIQFI-FSTALDGKIKAWLYD--NL-GSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 591 (1120)
Q Consensus 518 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~-~~~--~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~ 591 (1120)
...++|++ +++.+ ++.+.++.|.+|+++ ++ ... ..+. .+.. .......++++++
T Consensus 181 ~~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~---------~~~~---------~~~~p~gi~~d~~ 240 (326)
T 2ghs_A 181 PNSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI---------DSTG---------IKGGMDGSVCDAE 240 (326)
T ss_dssp EEEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE---------ECTT---------SSSEEEEEEECTT
T ss_pred cCCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEE---------ECCC---------CCCCCCeeEECCC
Confidence 67788754 45555 444557899999986 32 110 0000 0000 0112345677777
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc-CCCCEEEEEECC
Q 001224 592 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND 645 (1120)
Q Consensus 592 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d 645 (1120)
|+..++...++.|.+||. +++.+..+.... ..+.+++|+ ++++.|++++..
T Consensus 241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecC
Confidence 777777667789999998 677777776443 358899998 888877666554
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=1e-08 Score=123.91 Aligned_cols=203 Identities=12% Similarity=0.125 Sum_probs=135.8
Q ss_pred EEEEEecCCCcEEEEEeCCC-------------------cEEEEEeecceeeEeecc--cc-------cceEEEEEccCC
Q 001224 869 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 920 (1120)
Q Consensus 869 ~~l~~sp~d~~~lasg~~dg-------------------~v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 920 (1120)
..++++| ++.+|+.+..++ .|..+|..+|+.+..++. |. ....-+....+|
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 4678899 677787777664 499999999998877653 21 122223344477
Q ss_pred ---CEEEEEeCCCCEEEEECCCcccccceeeeccC--------C------------CC----CC---CCCCcEEEEccCC
Q 001224 921 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT--------G------------RT----PT---AQSDTRVQFHQDQ 970 (1120)
Q Consensus 921 ---~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~--------~------------~~----~~---~~~i~~~~fspdg 970 (1120)
..|+.++.+|.+.++|..+|+........... + .. +. ...-..++|+|++
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 68999999999999999998764322211000 0 00 00 0001367899998
Q ss_pred cEEEEE-eC-------------------------------------------CeEEEEEcCCceeeeccccCCCCCCeeE
Q 001224 971 IHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPITH 1006 (1120)
Q Consensus 971 ~~la~~-~d-------------------------------------------~~v~i~d~~~~~~~~~~~~~~h~~~v~~ 1006 (1120)
.++++. .+ +.|..||+.+++.+-.+.. ..++..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~ 481 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG 481 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence 888773 21 6799999999998766543 334555
Q ss_pred EEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCE-EEEEeC-----------
Q 001224 1007 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE-FALGLS----------- 1074 (1120)
Q Consensus 1007 l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~-l~s~~~----------- 1074 (1120)
..++.++.++++++.||.+++||..+|+.+..+. .+.+ +...-+.|.+ +|+. +++.+.
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~ 551 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP----TGTG-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARA 551 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCS
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeee----CCCC-----cccCCEEEEe-CCEEEEEEeccCCccccccccc
Confidence 6677788899999999999999999999999887 3333 2222456665 4554 444332
Q ss_pred -----CCcEEEEecCC
Q 001224 1075 -----DGGVHVFEPLE 1085 (1120)
Q Consensus 1075 -----Dg~v~vW~~~~ 1085 (1120)
.+.+.+|.+..
T Consensus 552 ~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 552 TERQGPGTVYTFVVGG 567 (677)
T ss_dssp CSCCCCCEEEEEEETC
T ss_pred cccCCCCeEEEEeccc
Confidence 36788888874
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.15 E-value=1.2e-08 Score=112.14 Aligned_cols=225 Identities=12% Similarity=-0.016 Sum_probs=144.8
Q ss_pred EEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224 760 ISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 838 (1120)
Q Consensus 760 i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~ 838 (1120)
..+..|+|++. .+++...++.|..|+.. ++...... ....+.+++++++|++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~----------------------~~~~~~~~-----~~~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLA----------------------SGRKTVHA-----LPFMGSALAKISDSKQ 103 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETT----------------------TTEEEEEE-----CSSCEEEEEEEETTEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECC----------------------CCcEEEEE-----CCCcceEEEEeCCCeE
Confidence 45678999754 44555566788877653 22211110 2346889999999987
Q ss_pred EEEEeCCcEEEEEcCCCceeeeecC----CCCCeEEEEEecCCCcEEEEEeC------CCcEEEEEeecceeeEeecccc
Q 001224 839 VMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS 908 (1120)
Q Consensus 839 l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~------dg~v~vwd~~~~~~~~~l~~h~ 908 (1120)
+++. ++.|.+||..+++....... ....+..++++| +++++++... .+.|+.++ +++.. .+..+.
T Consensus 104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 7765 44599999987765432221 123588999999 7877665432 23455555 55533 333344
Q ss_pred cceEEEEEccCCCEEEEE-eCCCCEEEEECC--Cc-ccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEE
Q 001224 909 KRITGLAFSHALNVLVSS-GADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI 983 (1120)
Q Consensus 909 ~~V~~l~~s~d~~~l~s~-s~Dg~v~iWd~~--~~-~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i 983 (1120)
.....++|+||++.|+.+ +.++.|.+|+++ ++ .......+....... ..+..++++++|.+.++. .++.|.+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 457789999999876544 557889999986 54 322222222222111 245789999999877775 5689999
Q ss_pred EEcCCceeeeccccCCCCCCeeEEEEC-CCCcEEEEEEcC
Q 001224 984 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1022 (1120)
Q Consensus 984 ~d~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~D 1022 (1120)
||. +++.+..+. .+...+++++|+ +|++.|++++..
T Consensus 256 ~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEecC
Confidence 998 566666655 335679999998 898877665544
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=4.9e-09 Score=126.72 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=58.9
Q ss_pred CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc-cceEEEEEccCCCEE
Q 001224 845 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL 923 (1120)
Q Consensus 845 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l 923 (1120)
|.|..||+.+++.+..+. +...+....+.. ++.++++|+.||.+++||..+++.+..+.... ....-+.|..+|+.+
T Consensus 457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEEEeCCCCcEEeecC-CCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 679999999999887765 333344555666 66788889999999999999999998886443 233456777888755
Q ss_pred EE
Q 001224 924 VS 925 (1120)
Q Consensus 924 ~s 925 (1120)
+.
T Consensus 535 v~ 536 (677)
T 1kb0_A 535 VS 536 (677)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 228
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.14 E-value=7.4e-10 Score=121.84 Aligned_cols=177 Identities=11% Similarity=0.033 Sum_probs=131.3
Q ss_pred ceEEEEEcCCCCeEEEEECCCeEEEEEccCCce--------eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 499 (1120)
Q Consensus 428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~--------~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v 499 (1120)
+++.+++++...++++|+.++ +++|+++.... .... ....+.+ |+.|+| |++ +|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence 799999999999999999986 66699765431 1111 1224566 999999 888 67777 8899999
Q ss_pred EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224 500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 579 (1120)
Q Consensus 500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 579 (1120)
||+.+.........|...+.++.+.+. .+++++.||.|.+||+....... ..
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~-------------------- 162 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LA-------------------- 162 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EE--------------------
T ss_pred EEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----cc--------------------
Confidence 999987777777778888888775432 28888999999999998654321 11
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eEEEec----C---CCCCCcCeEEEcCCCCEEEEEE
Q 001224 580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDA----D---GGLPASPRIRFNKDGCLLAVST 643 (1120)
Q Consensus 580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~~~~s~~~~~l~~~~ 643 (1120)
..+.+++|+|+| ++.|..||.+++|+...+.. ..++.. + .+...|.++.|.+++.++++-.
T Consensus 163 -~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 163 -QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp -ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred -CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 156667777776 67899999999999987775 555621 1 1345799999999999888643
No 229
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.12 E-value=2.9e-05 Score=92.09 Aligned_cols=504 Identities=10% Similarity=0.067 Sum_probs=255.5
Q ss_pred CCCceEEEEEcCCCCeEEEEE-CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC
Q 001224 425 PGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 503 (1120)
Q Consensus 425 h~~~V~~l~~spdg~~las~~-~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~ 503 (1120)
.......|+|++.+..|..+. ..+.|..+++++...... .+.........+++.+.+.. ++++-...+.|.+.++.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~d 114 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLD 114 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECC
Confidence 344678999999777776654 457888898876532111 23333357889999997775 56666778899999976
Q ss_pred CCceeEEeeccccCeEEEeeccCCCceEEEEEe-cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224 504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 582 (1120)
Q Consensus 504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 582 (1120)
.......+.........+++.+.. |.++++-- ..+.|...+++.................++
T Consensus 115 G~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gla---------------- 177 (619)
T 3s94_A 115 GSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT---------------- 177 (619)
T ss_dssp SCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEE----------------
T ss_pred CCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEE----------------
Confidence 544333332333445567765432 33334331 234565555543222222222223344444
Q ss_pred eeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhh
Q 001224 583 LGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 661 (1120)
Q Consensus 583 i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 661 (1120)
+++++..|+.+ ...+.|...|++........... ......+++..+ ...++-...+.|...|..++.. ..
T Consensus 178 -----ld~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~ 248 (619)
T 3s94_A 178 -----LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LR 248 (619)
T ss_dssp -----EETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CE
T ss_pred -----EEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cE
Confidence 44443344444 45677888888654333222211 123456788665 4444444567888888776632 21
Q ss_pred hcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCC
Q 001224 662 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 741 (1120)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 741 (1120)
.+..... .|. .+.++.-....
T Consensus 249 ~i~~~~~-------------~p~----------------------------------------------~i~v~~~~~qp 269 (619)
T 3s94_A 249 EIHSDIF-------------SPM----------------------------------------------DIHAFSQQRQP 269 (619)
T ss_dssp ECCSCCC-------------CCS----------------------------------------------EEEECCGGGSC
T ss_pred EEecCCC-------------CCc----------------------------------------------EEEEEccccCC
Confidence 1111000 000 11111100000
Q ss_pred -CCccceeeccCCccccccEEEEEE-cCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224 742 -EPNQCRSLRLPENLRATKISRLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 819 (1120)
Q Consensus 742 -~~~~~~~~~~~~~~~~~~i~~l~~-s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 819 (1120)
....|. ...+....+++ +|.....-+.+..|.. +
T Consensus 270 ~~~n~C~-------~~ng~Cs~lCl~~~~~~~~~C~C~~g~~--------------------------------l----- 305 (619)
T 3s94_A 270 NATNPCG-------IDNGGCSHLCLMSPVKPFYQCACPTGVK--------------------------------L----- 305 (619)
T ss_dssp CCCCTTT-------TTGGGCSSEEEECSSTTSEEEECCTTCC--------------------------------B-----
T ss_pred Ccccccc-------CCCCcccceEECCCCCCCceEeCCchhe--------------------------------e-----
Confidence 000000 00001111111 1211111122222110 0
Q ss_pred CCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceee-eec-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224 820 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 820 ~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~-~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 897 (1120)
.....+|.. ....+|+.+..+.|+..++....... .+. ..-..+.+++|++.+++++++-...+.|+.+++..
T Consensus 306 ---~~d~~~C~~--~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g 380 (619)
T 3s94_A 306 ---LENGKTCKD--GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG 380 (619)
T ss_dssp ---CTTSSCBCS--SCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ---cccCcccCC--CCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC
Confidence 001111111 12346666667788888887543221 121 12345789999985565555555678898888765
Q ss_pred ceeeEeecccccceEEEEEccCCC-EEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-CcEEEE
Q 001224 898 DEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV 975 (1120)
Q Consensus 898 ~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-g~~la~ 975 (1120)
......+........++++...+. +.++-+..+.|.+.+++.... ..+.... ......+++.|. |.+..+
T Consensus 381 ~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~---~~l~~~~-----l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 381 SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR---KILISED-----LEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECTT-----CCSEEEEEEETTTTEEEEE
T ss_pred CccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE---EEEEECC-----CCCeeeEEEEcCCCcEEEe
Confidence 433333333335677899986544 455555678899998876422 1121111 124689999997 544444
Q ss_pred E--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc-CCcEEEEEcCCcceeeeeCCCcccCCCCCCC
Q 001224 976 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSS 1052 (1120)
Q Consensus 976 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~ 1052 (1120)
- ....|...+++.... ..+. ...-.....|+++++++.|+.+.. .+.|..++++.......+... +
T Consensus 453 D~g~~~~I~r~~~dG~~~-~~l~-~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--l------- 521 (619)
T 3s94_A 453 DWGEIPKIERAALDGSDR-VVLV-NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK--I------- 521 (619)
T ss_dssp ECSSSCEEEEEETTSCSC-EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC--C-------
T ss_pred cCCCCCEEEEEccCCCcc-EEEE-eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC--C-------
Confidence 2 235677777654332 2222 123557889999998777776654 467988998654433222200 0
Q ss_pred CccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1053 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1053 ~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
..|.+++... +.+.++-...+.|..-+..+++
T Consensus 522 -~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 522 -PHIFGFTLLG--DYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp -CSSCCEEEET--TEEEEECTTSSCEEEEESSSCC
T ss_pred -CCcEEEEEEC--CEEEEeecCCCeEEEEEcCCCc
Confidence 1233566553 3445555556777777777765
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.09 E-value=8e-09 Score=112.47 Aligned_cols=228 Identities=11% Similarity=0.035 Sum_probs=149.5
Q ss_pred ccEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC
Q 001224 758 TKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 836 (1120)
Q Consensus 758 ~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~ 836 (1120)
....+..|+++|+ .+++...++.|..|+.. +.... +.. +...+..++++++|
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----------------------g~~~~--~~~--~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-----------------------GTVDV--LLD--ATAFTNGNAVDAQQ 97 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-----------------------SCEEE--EEE--SCSCEEEEEECTTS
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-----------------------CCEEE--EeC--CCCccceeeECCCC
Confidence 4456789999998 45555667888877641 11110 000 34567899999999
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeeec---CC-CCCeEEEEEecCCCcEEEE----EeC-------------CCcEEEEE
Q 001224 837 SYVMSAS-GGKISLFNMMTFKTMATFM---PP-PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIYN 894 (1120)
Q Consensus 837 ~~l~~~s-dg~i~vwd~~~~~~~~~~~---~~-~~~i~~l~~sp~d~~~las----g~~-------------dg~v~vwd 894 (1120)
+++++.. ++.|.+|+.. ++...... +. ...+..++++| +|+++++ |.. .+.|+.||
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 9776655 5789999986 54322211 11 13467899999 8888876 332 24677777
Q ss_pred eecceeeEeecccccceEEEEEccCCCEEEEEeCC------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224 895 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 968 (1120)
Q Consensus 895 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp 968 (1120)
..+++..... .......++|+||++.|+.+... +.|.+|++..+............ ......+++++
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d~ 248 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVDR 248 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEECT
T ss_pred CCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEECC
Confidence 6666644333 44567889999999988777665 68999998764421111221111 12456799999
Q ss_pred CCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEE
Q 001224 969 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1026 (1120)
Q Consensus 969 dg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1026 (1120)
+|++.++. .+.|.+|+. .++.+..+... ..+.+++|+++++.|+.++.++..+
T Consensus 249 ~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 249 GGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 99955555 456999998 46666665532 2589999999999888887765433
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.09 E-value=9.3e-09 Score=124.56 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=58.6
Q ss_pred CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc-eEEEEEccCCCEE
Q 001224 845 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL 923 (1120)
Q Consensus 845 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l 923 (1120)
|.|..||+.+++.+..+..+.. +..-.++. .+.++++|+.||.|+.||..+|+.+..++...+. ..-+.|+.||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 6799999999998877764432 33335566 6678889999999999999999999888754333 2457778888754
Q ss_pred E
Q 001224 924 V 924 (1120)
Q Consensus 924 ~ 924 (1120)
+
T Consensus 533 v 533 (689)
T 1yiq_A 533 V 533 (689)
T ss_dssp E
T ss_pred E
Confidence 3
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.09 E-value=6.9e-08 Score=108.70 Aligned_cols=158 Identities=8% Similarity=0.048 Sum_probs=99.7
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeeeeeccc-------ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224 437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 509 (1120)
Q Consensus 437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~ 509 (1120)
++..|.+++.++.|..+|.++|+.+... .+... ...+.+.... ++. .++.++.++.|..+|..+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeee-cCccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 4678888888999999999999866432 22111 2233322222 334 37778889999999999999987
Q ss_pred EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224 510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589 (1120)
Q Consensus 510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~ 589 (1120)
.............. . + ..++.++.++.|..+|..+++............. . .... .....
T Consensus 128 ~~~~~~~~~~~p~~--~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~-~--~~~~-------------~~~~~ 187 (376)
T 3q7m_A 128 QTKVAGEALSRPVV--S-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS-L--RGES-------------APTTA 187 (376)
T ss_dssp EEECSSCCCSCCEE--E-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCC-------------CCEEE
T ss_pred EEeCCCceEcCCEE--E-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-e--cCCC-------------CcEEE
Confidence 77644322111121 1 2 3678888899999999988877766554321110 0 0000 00011
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 001224 590 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 620 (1120)
Q Consensus 590 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 620 (1120)
+..++.++.++.|..+|..+++.+.....
T Consensus 188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 24577888899999999999988877653
No 233
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.08 E-value=5.4e-09 Score=127.86 Aligned_cols=242 Identities=11% Similarity=0.084 Sum_probs=157.1
Q ss_pred ccccEEEEEEcCCCceEEEecc-----CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEE
Q 001224 756 RATKISRLIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 830 (1120)
Q Consensus 756 ~~~~i~~l~~s~~g~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l 830 (1120)
+...+..++|||||++++.+.. ...|++||+ .+|+.+...+ .......+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl----------------------~tg~~~~~~~----~~~k~~~~ 180 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV----------------------ESKQPLETPL----KDVKFSGI 180 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEET----------------------TTCSEEEEEE----EEEESCCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEEC----------------------CCCCCCcccc----CCceeccE
Confidence 4557889999999998875432 245666655 4554333211 11113568
Q ss_pred EEccCCCEEEEEe-CC-------------cEEEEEcCCCce----eeeecC-CCCCeEEEEEecCCCcEEEEEeC----C
Q 001224 831 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT----MATFMP-PPPAATFLAFHPQDNNIIAIGMD----D 887 (1120)
Q Consensus 831 ~~s~d~~~l~~~s-dg-------------~i~vwd~~~~~~----~~~~~~-~~~~i~~l~~sp~d~~~lasg~~----d 887 (1120)
+|+ ||+.|+.++ +. .|++|++.+... +..... |......+.|+| |+++|+.... +
T Consensus 181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG 258 (693)
T ss_dssp EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence 899 999998887 53 399999987643 222232 344578899999 8887765442 2
Q ss_pred CcEEEEEeecce-eeEeecccccceEEEEEccCCCEEE-EEeCC---CCEEEEECCCcccccceeeeccCCCCCCCCCCc
Q 001224 888 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLV-SSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 962 (1120)
Q Consensus 888 g~v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~D---g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~ 962 (1120)
..|+++|+.++. ....+..+....... |+++|..|+ +...| +.|.+|++.++.......+.. +.. .+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~---~~~ 331 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ERQ---QVL 331 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCS---SCE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CCC---CEE
Confidence 489999987753 455666676666655 666766655 44443 568899998865422222221 211 233
Q ss_pred EEEEccCCcEEEEE--eCC--eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC----CcEEEEEcCCcc
Q 001224 963 RVQFHQDQIHFLVV--HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1034 (1120)
Q Consensus 963 ~~~fspdg~~la~~--~d~--~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D----g~v~iwd~~~~~ 1034 (1120)
.|++++++|+.. .++ .|++|++..+.. ..+.. .+.+.+..+.+++|++.|+....+ ++|+.||+.+++
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 899999988873 444 689999885543 33332 234567888889998877766555 889999998886
Q ss_pred ee
Q 001224 1035 LR 1036 (1120)
Q Consensus 1035 ~~ 1036 (1120)
..
T Consensus 408 ~~ 409 (693)
T 3iuj_A 408 IS 409 (693)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.07 E-value=1.6e-08 Score=122.46 Aligned_cols=191 Identities=16% Similarity=0.160 Sum_probs=125.6
Q ss_pred EEEEEecCCCcEEEEEeCCCc-------------------EEEEEeecceeeEeecc--cc-------cceEEEEEccCC
Q 001224 869 TFLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 920 (1120)
Q Consensus 869 ~~l~~sp~d~~~lasg~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 920 (1120)
..++++| +..+|++++.++. |..+|..+|+.+..++. |. .++.......+|
T Consensus 238 ~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 238 DSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG 316 (689)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence 3678999 6778888887764 99999999998877654 22 122222223366
Q ss_pred C---EEEEEeCCCCEEEEECCCcccccceeeec------------------------cCCC----CC---CCCCCcEEEE
Q 001224 921 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGR----TP---TAQSDTRVQF 966 (1120)
Q Consensus 921 ~---~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~------------------------~~~~----~~---~~~~i~~~~f 966 (1120)
+ .|+.++.+|.++++|..+|+......... ..+. .+ ....-..++|
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 5 78899999999999999987642111100 0000 00 0001134789
Q ss_pred ccCCcEEEEE-e---------------------------------------------CCeEEEEEcCCceeeeccccCCC
Q 001224 967 HQDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRES 1000 (1120)
Q Consensus 967 spdg~~la~~-~---------------------------------------------d~~v~i~d~~~~~~~~~~~~~~h 1000 (1120)
+|+..++++. . ++.|..||+.+++.+-....
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--- 473 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--- 473 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---
Confidence 9988877763 1 36799999999998766543
Q ss_pred CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC-EEEEEe
Q 001224 1001 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL 1073 (1120)
Q Consensus 1001 ~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~-~l~s~~ 1073 (1120)
..++..-.++..+.++++|+.||.++.||..+|+.+.+++ .+.+ +...-+.|.. ||+ ++++.+
T Consensus 474 ~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~ty~~-~G~qyv~~~~ 537 (689)
T 1yiq_A 474 VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP----AASG-----VMAAPVTYSV-DGEQYVTFMA 537 (689)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEE
T ss_pred CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeee----CCCC-----cccCceEEEE-CCEEEEEEEe
Confidence 2233334666788899999999999999999999998877 3433 2222356666 455 455443
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.03 E-value=9.2e-09 Score=113.02 Aligned_cols=253 Identities=11% Similarity=-0.022 Sum_probs=151.5
Q ss_pred eEEEEEeCCC----cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE--------
Q 001224 378 TLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-------- 445 (1120)
Q Consensus 378 ~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-------- 445 (1120)
+++++...++ +|.+.|..+++.+.+.. .+. .+ .+++||||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 3566665555 88899999999887522 223 24 799999999999986
Q ss_pred --CCCeEEEEEccCCceeeeeeeecc-c----ccCeEEEEEcCCCCceEEEEecCCCcEEE--EECCCCceeEEeecccc
Q 001224 446 --SRHIVQIYSYHGGDEVRQHLEIDA-H----VGGVNDIAFSHPNKQLCVITCGDDKTIKV--WDATNGAKQYIFEGHEA 516 (1120)
Q Consensus 446 --~dg~v~iwd~~~~~~~~~~~~l~~-h----~~~V~~v~~s~d~~~~~l~s~s~d~~i~v--wd~~~~~~~~~~~~h~~ 516 (1120)
.++.|.+||..+++.+..+. +.+ . ......++|+|||+++|++..+.+..|.+ +|+.+ +.++..- +
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~ 166 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S 166 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C
Confidence 36889999999998776432 220 0 12456899999999633322233567888 99877 4444311 1
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCC-----CCCcee----eeCCC----------------CceeEEEEcCCC
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-----LGSRVD----YEAPG----------------RWCTTMAYSADG 571 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~----~~~~~----------------~~v~~~~~s~~g 571 (1120)
. ..+.+... ..+++.+.||.+.+.|+.+ ++.... +.... +.+..+......
T Consensus 167 ~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~ 242 (368)
T 1mda_H 167 C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAG 242 (368)
T ss_dssp C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSC
T ss_pred c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCc
Confidence 1 11122222 2344555677776677665 111100 00000 111111111000
Q ss_pred CeEEe------------cccccceeEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeEEEecCCCCCCcCeE
Q 001224 572 TRTYQ------------GFRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGGLPASPRI 630 (1120)
Q Consensus 572 ~~~~~------------~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 630 (1120)
..+.. +........+.++|++++++.+.. ++.+.++|+.+++.+..+.... ....+
T Consensus 243 ~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi 319 (368)
T 1mda_H 243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAI 319 (368)
T ss_dssp CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEE
T ss_pred ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceE
Confidence 00000 000011122678999888887543 2356699999999888886543 37889
Q ss_pred EEcCCCC-EEEEEE-CCCcEEEEEccCcchhhhhcc
Q 001224 631 RFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTFE 664 (1120)
Q Consensus 631 ~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 664 (1120)
+|+|||+ .+++.. .++.|.++|+.++ +.++.+.
T Consensus 320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 320 IAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred EECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 9999998 455566 5899999999988 5555543
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.01 E-value=1.2e-08 Score=112.60 Aligned_cols=176 Identities=14% Similarity=0.146 Sum_probs=106.5
Q ss_pred EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224 433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 512 (1120)
Q Consensus 433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 512 (1120)
.+..+| .|..++.++.|..|| .+++.+. ....+...+.++...++|. +..++.+ |..+|. +++.+..+.
T Consensus 26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKW---FFKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp EECTTS-CEECSSTTTTTEEEC-TTSCEEE---SSCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGSC
T ss_pred eEccCC-eEEEEcCCCEEEEEC-CCCcEEE---EEecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEEE
Confidence 343444 456667788899999 7777543 2333444567788877776 5555555 888885 666654443
Q ss_pred ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224 513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592 (1120)
Q Consensus 513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~ 592 (1120)
..........+. + ..+..++.++.|..+|.. +............+.++...+++
T Consensus 95 ~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g--------------------- 148 (330)
T 3hxj_A 95 TKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG--------------------- 148 (330)
T ss_dssp C-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS---------------------
T ss_pred CCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC---------------------
Confidence 322222222322 2 357778888999999887 55544444333333333333333
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 652 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 652 (1120)
. +..++.++.|..+|.. ++.+..+.... ..+.++.+.+++.+++.. +.+..+|
T Consensus 149 ~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~t---~~l~~~d 201 (330)
T 3hxj_A 149 T-IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFGS---DKVYAIN 201 (330)
T ss_dssp C-EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEES---SSEEEEC
T ss_pred E-EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEEe---CEEEEEC
Confidence 3 6777888999999998 77776665432 246667777777655433 6677666
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=8.8e-08 Score=105.05 Aligned_cols=192 Identities=12% Similarity=0.125 Sum_probs=131.2
Q ss_pred ccEEEEccCCCEEEEEe-C------CcEEEEEcCCCceeeeecCCCCC---eEEEEEecCCCcEEEEEe-----------
Q 001224 827 VPCFALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFMPPPPA---ATFLAFHPQDNNIIAIGM----------- 885 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~s-d------g~i~vwd~~~~~~~~~~~~~~~~---i~~l~~sp~d~~~lasg~----------- 885 (1120)
...+.++|+| .++++. + |.|.++|..+++.+.++...... -..+-|+| +++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCcccccccc
Confidence 4567888999 555543 4 67999999999999888633222 34578899 888777764
Q ss_pred --------CCCcEEEEEeecceeeEeeccc--ccceEEEEE--ccCCCEEEEEe------CCCCEEEEECCCccccccee
Q 001224 886 --------DDSSIQIYNVRVDEVKSKLKGH--SKRITGLAF--SHALNVLVSSG------ADSQLCVWSSDGWEKQKNRF 947 (1120)
Q Consensus 886 --------~dg~v~vwd~~~~~~~~~l~~h--~~~V~~l~~--s~d~~~l~s~s------~Dg~v~iWd~~~~~~~~~~~ 947 (1120)
.+.+|.+||+.+++.+.++..- ......+.| +|+++++..++ .+++|.+|..+.++......
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 3679999999998888877642 123345555 99999887776 45688887766543322222
Q ss_pred eeccCCC----CC--------CCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC---CceeeeccccCCC----------
Q 001224 948 LQIPTGR----TP--------TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT---KLECVKQWVPRES---------- 1000 (1120)
Q Consensus 948 ~~~~~~~----~~--------~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~---~~~~~~~~~~~~h---------- 1000 (1120)
+...... .+ .......+.+|+||++|.++ ..+.|.+||+. +.+.+..+...+.
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 2111100 00 01356899999999999996 56799999985 2355555544321
Q ss_pred --CCCeeEEEECCCCcEEEEEE
Q 001224 1001 --SAPITHATFSCDSQLVYACF 1020 (1120)
Q Consensus 1001 --~~~v~~l~~s~dg~~l~s~~ 1020 (1120)
.+....+++||||++|+++.
T Consensus 378 ~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 378 KLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCSCCCCEEECTTSSEEEEEC
T ss_pred cCCCCCCEEEEcCCCCEEEEEc
Confidence 11368899999999999998
No 238
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.00 E-value=6.9e-05 Score=88.93 Aligned_cols=197 Identities=9% Similarity=0.012 Sum_probs=119.1
Q ss_pred CCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE
Q 001224 825 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 902 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 902 (1120)
..+.+++|.+.+..|..+. .+.|+.+++........+.........+++...++++.++-...+.|.+.++... ...
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~ 427 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRK 427 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEE
Confidence 4467899998777777665 5789999987544333333334567789998745666666666788999887644 333
Q ss_pred ee-cccccceEEEEEccCCCEEEEEeC--CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001224 903 KL-KGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 977 (1120)
Q Consensus 903 ~l-~~h~~~V~~l~~s~d~~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~ 977 (1120)
.+ ...-....+|++.|....|..+.. ...|...+++.... ..+. ... ......+++++++..|..+ .
T Consensus 428 ~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~---~~l~--~~~---l~~P~GlalD~~~~~LY~aD~~ 499 (619)
T 3s94_A 428 ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR---VVLV--NTS---LGWPNGLALDYDEGKIYWGDAK 499 (619)
T ss_dssp EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEE--CSS---CSCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc---EEEE--eCC---CCCCeeeEEcccCCEEEEEECC
Confidence 33 333456789999997555554443 35566666665321 1111 111 1245789999977777665 5
Q ss_pred CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcc
Q 001224 978 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLK 1034 (1120)
Q Consensus 978 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~ 1034 (1120)
.+.|..+++..... +.+.. .......+|++..+ +|+.+. ..+.|...|..++.
T Consensus 500 ~~~I~~~~~dG~~~-~~~~~-~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 500 TDKIEVMNTDGTGR-RVLVE-DKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp TTEEEEEESSSCCC-EEEEE-CCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred CCEEEEEecCCCce-EEEec-cCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 56888898865433 22211 11233445666433 555443 44667777877773
No 239
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.98 E-value=2.8e-07 Score=103.68 Aligned_cols=233 Identities=9% Similarity=0.079 Sum_probs=136.2
Q ss_pred EEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCc
Q 001224 380 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 459 (1120)
Q Consensus 380 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~ 459 (1120)
+.+++.++.|..+|.++|+.+-+..+... . . ........+.+ ....++..+.+++.++.|..+|.++|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~-----~-~----~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAEK-----D-G----WFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-------------CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCccc-----c-c----cccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 77778889999999999997754322100 0 0 00000112222 222356778888999999999999998
Q ss_pred eeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe-----EEEeeccCCCceEEEE
Q 001224 460 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV-----YSVCPHHKENIQFIFS 534 (1120)
Q Consensus 460 ~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~~l~s 534 (1120)
.+... .+.+ ......... ++ .++.++.++.|..+|..+|+.+..+....... ..... . + ..++.
T Consensus 125 ~~W~~-~~~~--~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~-~-~~v~~ 193 (376)
T 3q7m_A 125 VAWQT-KVAG--EALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--A-F-GAAVV 193 (376)
T ss_dssp EEEEE-ECSS--CCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--E-T-TEEEE
T ss_pred EEEEE-eCCC--ceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--E-C-CEEEE
Confidence 66422 2221 111111222 33 37778889999999999999988776432211 11111 1 2 36777
Q ss_pred EecCCeEEEEecCCCCCceeeeCCCCc----eeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001224 535 TALDGKIKAWLYDNLGSRVDYEAPGRW----CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 610 (1120)
Q Consensus 535 ~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 610 (1120)
++.++.|..+|..+++........... +..+. ..... + .+ .+..++.++.++.+..+|..
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~~~---------p----~~--~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS-DVDTT---------P----VV--VNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC------------CCCCC---------C----EE--ETTEEEEECTTSCEEEEETT
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCccccccc-ccCCC---------c----EE--ECCEEEEEecCcEEEEEECC
Confidence 888999999999887776655432110 00000 00000 0 00 12457777788889999998
Q ss_pred CCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 611 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 611 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+++.+...... ....+.. ++..+++++.++.+..+|..++
T Consensus 258 tG~~~w~~~~~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 258 SGQIMWKRELG----SVNDFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp TCCEEEEECCC----CEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred CCcEEeeccCC----CCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 88877665522 1222332 4566777777777777777665
No 240
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.93 E-value=0.00033 Score=83.12 Aligned_cols=505 Identities=7% Similarity=-0.077 Sum_probs=261.9
Q ss_pred CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 443 (1120)
-..+.+|+|++.+..++.+-..++.|..+++....... +..........+++.+.++.|..
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY~ 96 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLYW 96 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEEE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEEE
Confidence 35788999999888777777778999999987543221 11112235678999886665554
Q ss_pred E-ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEe
Q 001224 444 A-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 522 (1120)
Q Consensus 444 ~-~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 522 (1120)
+ ...+.|.+.++++..... .+...-.....|++.|....+|+.--+..+.|...++..... ..+.........++
T Consensus 97 tD~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~Gla 172 (628)
T 4a0p_A 97 ADTGTNRIEVSKLDGQHRQV---LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLT 172 (628)
T ss_dssp EETTTTEEEEEETTSTTCEE---EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEE
T ss_pred EECCCCEEEEEecCCCcEEE---EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEE
Confidence 4 456789999988654221 122334567899999976643333223456788888764443 33333445567788
Q ss_pred eccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224 523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 602 (1120)
Q Consensus 523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 602 (1120)
+.+.. +.+.++-...+.|...|++.... ..+........ .+++.. +..+++-...+
T Consensus 173 lD~~~-~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~---------------------glav~~-~~ly~tD~~~~ 228 (628)
T 4a0p_A 173 IDYAK-RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPF---------------------GLTQYQ-DYIYWTDWSRR 228 (628)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEE---------------------EEEEET-TEEEEEETTTT
T ss_pred Ecccc-CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCce---------------------EEEEEC-CEEEEecCCCC
Confidence 75533 23444445567888888865332 21211111122 233332 22344444578
Q ss_pred eEEEEECCCCceeEEEecCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCc
Q 001224 603 SIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 681 (1120)
Q Consensus 603 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1120)
.|...|..+++....+..... ....+.. ++..+. + .. .+... .+. .... ++
T Consensus 229 ~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~------------~n-~C~~~-ng~--------C~~~-C~ 280 (628)
T 4a0p_A 229 SIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G------------WN-ECASS-NGH--------CSHL-CL 280 (628)
T ss_dssp EEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C------------CC-TTTTT-GGG--------CSSE-EE
T ss_pred EEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c------------ce-EeccC-CCC--------cchh-hh
Confidence 888888877776655542211 2223322 211100 0 00 01000 000 0000 00
Q ss_pred ccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEE
Q 001224 682 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 761 (1120)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~ 761 (1120)
. .+.+.+-. .+..|.....|- ..
T Consensus 281 ~----------------------------------~~~~~~~C-~C~~g~~l~~d~------~~---------------- 303 (628)
T 4a0p_A 281 A----------------------------------VPVGGFVC-GCPAHYSLNADN------RT---------------- 303 (628)
T ss_dssp E----------------------------------ETTTEEEE-ECSTTCEECTTS------SC----------------
T ss_pred c----------------------------------CCCCCeeE-EcCCCcEecccC------Cc----------------
Confidence 0 00000000 011110000000 00
Q ss_pred EEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEE
Q 001224 762 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 841 (1120)
Q Consensus 762 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~ 841 (1120)
|. .+ ...++.+. ...|+-..+... ...... +.. ..-..+.+++|.+.+..|..
T Consensus 304 C~--~~-~~~Ll~s~-~~~i~~i~l~~~--------------------~~~~~~--l~~-~~~~~~~~ld~d~~~~~iy~ 356 (628)
T 4a0p_A 304 CS--AP-TTFLLFSQ-KSAINRMVIDEQ--------------------QSPDII--LPI-HSLRNVRAIDYDPLDKQLYW 356 (628)
T ss_dssp EE--CC-SSEEEEEE-TTEEEEECCCTT--------------------CCCCEE--CCC-TTCSCEEEEEEETTTTEEEE
T ss_pred Cc--cc-cceeeeec-cceEEEEecccc--------------------cCceEE--EEe-hhcCCceEEEEecCCCeEEE
Confidence 00 01 12233322 223332222100 000000 000 02345778999988777777
Q ss_pred Ee--CCcEEEEEcCCCceeeeecC------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee-cccccceE
Q 001224 842 AS--GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRIT 912 (1120)
Q Consensus 842 ~s--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~ 912 (1120)
+. .+.|+.++.........+.. ....+..+|+....+++..+-+..+.|.+.++. |+....+ ........
T Consensus 357 sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr 435 (628)
T 4a0p_A 357 IDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPR 435 (628)
T ss_dssp EETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEE
T ss_pred EecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCcee
Confidence 76 57788888764333233322 234688999998445566666677889998875 4444443 33456688
Q ss_pred EEEEccC-CCEEEEEeCCC--CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC
Q 001224 913 GLAFSHA-LNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT 987 (1120)
Q Consensus 913 ~l~~s~d-~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~ 987 (1120)
+|++.|. |.++.+-.... .|...+++.... ..+..... .....+++++++..|..+ ..+.|..+++.
T Consensus 436 ~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~---~~l~~~~l-----~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d 507 (628)
T 4a0p_A 436 AVVVNPEKGYMYFTNLQERSPKIERAALDGTER---EVLFFSGL-----SKPIALALDSRLGKLFWADSDLRRIESSDLS 507 (628)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEETTSCSC---EEEECSSC-----SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc---EEEEeccC-----CCccEEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 9999995 44444433222 455555654221 11111111 245889999987777765 45789999985
Q ss_pred CceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeee
Q 001224 988 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus 988 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~ 1039 (1120)
... ...+.. .......+|++.. +.++.+=...+.|...|..+|+....+
T Consensus 508 G~~-r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 508 GAN-RIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp SCS-CEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CCc-eEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 433 333321 2244567888754 444444445577888888877655443
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.93 E-value=3.5e-08 Score=108.82 Aligned_cols=217 Identities=13% Similarity=0.092 Sum_probs=132.0
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCe
Q 001224 370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 449 (1120)
Q Consensus 370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~ 449 (1120)
..+..+|. +..|+.++.|..|| .+++.+... ..+...+.++...++|.+.+ ++.+
T Consensus 25 ~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~-------------------~~~~~~~~~~~~~~~g~l~v-~t~~-- 79 (330)
T 3hxj_A 25 PILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFF-------------------KSGEIIECRPSIGKDGTIYF-GSDK-- 79 (330)
T ss_dssp CEECTTSC--EECSSTTTTTEEEC-TTSCEEESS-------------------CGGGEEEECCEETTTTEECC-SSCE--
T ss_pred ceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEE-------------------ecCCCcccceEEecCCcEEE-ecCc--
Confidence 34555665 66777889999999 888765421 11233467777777776444 4434
Q ss_pred EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCc
Q 001224 450 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 529 (1120)
Q Consensus 450 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 529 (1120)
|..+|. +++.+.. +...........+. ++. +..++.++.|..+|.. ++.......+...+.++.. ..++
T Consensus 80 l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~~---l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~g 148 (330)
T 3hxj_A 80 VYAINP-DGTEKWR---FDTKKAIVSDFTIF-EDI---LYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SEDG 148 (330)
T ss_dssp EEEECC-CGGGGGG---SCC-----CCEEEE-TTE---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTTS
T ss_pred EEEECC-CCcEEEE---EECCCCcccCceEE-CCE---EEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCCC
Confidence 888886 5543331 22222222333333 443 7778888999999988 8877776655554555544 3343
Q ss_pred eEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001224 530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 609 (1120)
Q Consensus 530 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 609 (1120)
.++.++.++.|..+|.. +.....+......+.++...++| . +..++ +.|..+|
T Consensus 149 -~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g---------------------~-l~v~t--~~l~~~d- 201 (330)
T 3hxj_A 149 -TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG---------------------T-IYFGS--DKVYAIN- 201 (330)
T ss_dssp -CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC---------------------C-EEEES--SSEEEEC-
T ss_pred -EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC---------------------E-EEEEe--CEEEEEC-
Confidence 46667788999999987 55554444433333444443333 3 55555 8899999
Q ss_pred CCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224 610 DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 652 (1120)
Q Consensus 610 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 652 (1120)
.+++.+....... ..+.++...++|.+ .+++.++.+..++
T Consensus 202 ~~g~~~~~~~~~~--~~~~~~~~~~~g~l-~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 202 PDGTEKWNFYAGY--WTVTRPAISEDGTI-YVTSLDGHLYAIN 241 (330)
T ss_dssp TTSCEEEEECCSS--CCCSCCEECTTSCE-EEEETTTEEEEEC
T ss_pred CCCcEEEEEccCC--cceeceEECCCCeE-EEEcCCCeEEEEC
Confidence 7777776665432 35778888888754 4456666777665
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.92 E-value=1.2e-07 Score=107.89 Aligned_cols=242 Identities=12% Similarity=0.071 Sum_probs=162.9
Q ss_pred EEEEcc-----CCCEEEEEe--CCcEEEEEcCCCceeeeecC-CCCCeEEEEE-e-cCCCcEEEEEe-------------
Q 001224 829 CFALSK-----NDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAF-H-PQDNNIIAIGM------------- 885 (1120)
Q Consensus 829 ~l~~s~-----d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~-s-p~d~~~lasg~------------- 885 (1120)
..++|. ||+++.+.. ++.|.+.|+.+.++...+.- ....+..+++ + | +++++++++
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l 167 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNM 167 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSST
T ss_pred ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCccc
Confidence 356665 999999877 56799999999998874432 2345888888 4 8 788888774
Q ss_pred -----CCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCC------------------------------
Q 001224 886 -----DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------------ 930 (1120)
Q Consensus 886 -----~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------------------------------ 930 (1120)
.++.|.+.|..+.+...++.--. .-..++++|||+++++.+.+.
T Consensus 168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 168 EDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp TCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred ccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 34579999999988887765322 346788999999999888553
Q ss_pred --------CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce----------
Q 001224 931 --------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE---------- 990 (1120)
Q Consensus 931 --------~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~---------- 990 (1120)
.|.|.|..+.+... .......+ .....+.++|||++++++ .+..|.++|+.+.+
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~-~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSL-FTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCS-SEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred CCCeeEECcEEEEeCcccCCce-eEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 35566665521100 01111112 245789999999999985 67899999999763
Q ss_pred --eeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC----------cceeeeeCCCcccCCCCCCCCccceE
Q 001224 991 --CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNVHPLV 1058 (1120)
Q Consensus 991 --~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~----------~~~~~~~~~~~~~~~g~~~~~v~~~~ 1058 (1120)
....... ......++|++||...++...|+.|.+||+++ .+.+.++.. .+.| ||. -..+.
T Consensus 321 ~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqp-Gh~---~~~~g 392 (595)
T 1fwx_A 321 SAVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQP-GHL---KTVMG 392 (595)
T ss_dssp GGEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCE-EEE---EETTT
T ss_pred cceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccc-ccc---eeccc
Confidence 2333322 45689999999994444566799999999987 456666652 1222 110 01123
Q ss_pred EEecCCCCCEEEEEeC---CCc----------EEEEecCCCC
Q 001224 1059 IAAHPQEPNEFALGLS---DGG----------VHVFEPLESE 1087 (1120)
Q Consensus 1059 i~~~p~d~~~l~s~~~---Dg~----------v~vW~~~~~~ 1087 (1120)
+..+| ||++|++... |+- -.++|++.++
T Consensus 393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 45677 7899888754 332 2789997666
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.91 E-value=2.6e-07 Score=101.40 Aligned_cols=248 Identities=14% Similarity=0.184 Sum_probs=152.2
Q ss_pred EEe--cCCCeEEEEEeCCCcEEEEecCCC----ceeEeeceeeeccCCCCcccccccccCCC-CceEEEEEcCCCCeEEE
Q 001224 371 DFH--PVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 371 ~~s--pdg~~lla~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las 443 (1120)
.++ +++++|++.|..+++|.|.|+.+. +.... + + ...+..... ..-..+..+||| .+++
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~--i---e--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs 153 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKV--I---E--------PEEVKKVSGYSRLHTVHCGPDA-IYIS 153 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEE--E---C--------HHHHHHHHCEEEEEEEEECSSC-EEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeee--e---c--------hhhcccccCCCcccceeECCCe-EEEE
Confidence 347 899999999999999999999754 22211 1 0 000110111 134567888999 6666
Q ss_pred EECC------CeEEEEEccCCceeeeeeeecccc-cCeEEEEEcCCCCceEEEEec-------------------CCCcE
Q 001224 444 AYSR------HIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG-------------------DDKTI 497 (1120)
Q Consensus 444 ~~~d------g~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~s-------------------~d~~i 497 (1120)
+..+ +.|.+.|.++++.+.... ..+.. .--..+.|+|+++ .+++.. .+.+|
T Consensus 154 ~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V 230 (462)
T 2ece_A 154 ALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRI 230 (462)
T ss_dssp EEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred cCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEE
Confidence 5544 789999999988765321 12222 2244688899999 566663 47899
Q ss_pred EEEECCCCceeEEeecc--ccCeEEEeeccCCCceEEEEEe------cCCeEEEEecCCCCCceeeeCCCCceeEEEEcC
Q 001224 498 KVWDATNGAKQYIFEGH--EAPVYSVCPHHKENIQFIFSTA------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 569 (1120)
Q Consensus 498 ~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 569 (1120)
.+||+.+++.+.++..- ......+.|..++++++++.++ .+++|.+|..+. +. ... ...+.+.+
T Consensus 231 ~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~-~~~------~~vIdi~~ 302 (462)
T 2ece_A 231 HFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GK-WNA------EKVIEIPA 302 (462)
T ss_dssp EEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TE-EEE------EEEEEECC
T ss_pred EEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-Cc-eeE------EEEEeCCC
Confidence 99999999888887642 1233455665567777777766 466888877653 11 100 00111110
Q ss_pred CCC-eEE----ecc--cccceeEEEEcCCCCEEEEEe-CCCeEEEEECCC---CceeEEEecCCC------------CCC
Q 001224 570 DGT-RTY----QGF--RKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS---VQLLTSIDADGG------------LPA 626 (1120)
Q Consensus 570 ~g~-~~~----~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~~~~~------------~~~ 626 (1120)
... ..+ .+. .......+.+++|+++|.++. ..+.|.+||+.. .+.+..+...+. ...
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence 000 000 000 012355677888888887765 478999999853 345555543211 012
Q ss_pred cCeEEEcCCCCEEEEEE
Q 001224 627 SPRIRFNKDGCLLAVST 643 (1120)
Q Consensus 627 v~~~~~s~~~~~l~~~~ 643 (1120)
-..++++|||++|+++.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 57899999999999987
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.88 E-value=6.6e-07 Score=101.91 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=83.7
Q ss_pred CccEEEEccCCCEEEEEe--CCcEEEEEcCCCc------------eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001224 826 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFK------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 891 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~------------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~ 891 (1120)
...++.++|||+++++++ +++|.++|+.+.+ ...... -......++|+| +|...++...|++|.
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVV 355 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEE
Confidence 456799999999999887 6889999998653 223332 334689999999 776666778899999
Q ss_pred EEEeec----------ceeeEeecccccce-----EEEEEccCCCEEEEEeC---CCC----------EEEEECCCccc
Q 001224 892 IYNVRV----------DEVKSKLKGHSKRI-----TGLAFSHALNVLVSSGA---DSQ----------LCVWSSDGWEK 942 (1120)
Q Consensus 892 vwd~~~----------~~~~~~l~~h~~~V-----~~l~~s~d~~~l~s~s~---Dg~----------v~iWd~~~~~~ 942 (1120)
+||+.+ .+.+.++..|..+- .++.++|||++|+++.. |+- -.++|+.+++.
T Consensus 356 kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred EEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 999987 45677776654431 23456899999998754 442 17899966543
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.88 E-value=6e-10 Score=124.56 Aligned_cols=190 Identities=13% Similarity=0.108 Sum_probs=108.3
Q ss_pred CCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCC
Q 001224 877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 956 (1120)
Q Consensus 877 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~ 956 (1120)
++..|++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456888899999999999999999888876 56666666778888888899999999999887653221111000000
Q ss_pred CCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224 957 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus 957 ~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
...++..++ .+++ +.++.++.||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+.
T Consensus 85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp -----TCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 011112334 4444 6789999999999998766542 22 245677889999999999999999999998
Q ss_pred eeeeCCCcccCCCCCCCCccceEEEecCC--CCCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 001224 1036 RCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSDGGVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus 1036 ~~~~~~~~~~~~g~~~~~v~~~~i~~~p~--d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~ 1093 (1120)
+..+..... . ..++.++ -...+++++.||.|+.||..+|+..|...
T Consensus 153 ~W~~~~~~~----------~--~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 153 RWNATYFDY----------A--ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCEEEEEEE----------C--CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEeEecccc----------c--CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 766542111 0 1112220 01567788999999999999999777653
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.85 E-value=6.7e-10 Score=124.19 Aligned_cols=186 Identities=12% Similarity=0.014 Sum_probs=110.7
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc-eE
Q 001224 835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-IT 912 (1120)
Q Consensus 835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~ 912 (1120)
++..+++++ ||.|+.||..+++.+..+.. ..+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 566788887 89999999999999888775 4555555666 6778888889999999999999887776544321 11
Q ss_pred -EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCce
Q 001224 913 -GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 990 (1120)
Q Consensus 913 -~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~ 990 (1120)
+..+. ++..|++++.|+.|+.||..+|+...... .+ ....++|++..+++ +.++.|+.||..+|+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~-----~~-------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS-----SA-------FADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec-----CC-------CcccccccCCEEEEEecCCEEEEEECCCCC
Confidence 11111 34577788889999999999987543211 11 12345667777777 578999999999998
Q ss_pred eeeccccCCCCCCeeEEEECCCC---cEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 991 CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 991 ~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
.+..+.... ....+++.+. ..+++++.||.|+.||..+|+.+.+..
T Consensus 152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 765543211 2223344432 567778899999999999999887654
No 247
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.81 E-value=0.00099 Score=84.48 Aligned_cols=224 Identities=7% Similarity=0.022 Sum_probs=126.4
Q ss_pred EEEEEeCCcEEEEEcCCCce--eeeecCCCCCeEEEEEecCCCcEEEEEeCC----------------------------
Q 001224 838 YVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD---------------------------- 887 (1120)
Q Consensus 838 ~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---------------------------- 887 (1120)
-++..+++.++|..+...+. +++++ -...+..++++| ..+.++.+..+
T Consensus 708 g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 708 SLALANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp EEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred cEEEEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 45555566788888754322 23333 234678888888 55544443311
Q ss_pred ---------------------CcEEEEEeecceeeEeecc-cccceEEEE---EccC-CCEEEEEe----------CCCC
Q 001224 888 ---------------------SSIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQ 931 (1120)
Q Consensus 888 ---------------------g~v~vwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~l~s~s----------~Dg~ 931 (1120)
+.|++.|..+++.+..+.- ....+.+++ |..+ ..+|+.|. ..|.
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 2356666666665544432 123344444 4333 46788776 2477
Q ss_pred EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECC
Q 001224 932 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 1011 (1120)
Q Consensus 932 v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~ 1011 (1120)
|.++++..++. ........+ +.+++++-- +| +|+++-...+++|++...+.++ .....+. .|..+....
T Consensus 866 i~vf~v~~~kL-~lv~~~~v~------g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~-~i~~~~l~~ 934 (1158)
T 3ei3_A 866 IVVFQYSDGKL-QTVAEKEVK------GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYN-NIMALYLKT 934 (1158)
T ss_dssp EEEEEEETTEE-EEEEEEEES------SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECC-CSCEEEEEE
T ss_pred EEEEEEECCEE-EEEEEEEcC------CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccc-cEEEEEEec
Confidence 99999874321 111111111 356666533 34 6777778999999998765433 1111111 233333333
Q ss_pred CCcEEEEEEcCCcEEEEEc--CCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1012 DSQLVYACFLDATVCVFSA--ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1012 dg~~l~s~~~Dg~v~iwd~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
.+.++++|..-..|.++.. ..+++...-. ++.+ .+++++.|.. ...++.+..+|.+++.+...
T Consensus 935 ~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--D~~~-------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 935 KGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--DFNP-------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ETTEEEEEESSBCEEEEEEETTTTEEEEEEE--CCSC-------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred cCCEEEEEEhhheEEEEEEEcCCCeEEEEEe--eccc-------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 5778888987777777654 3444432211 2222 4455788874 35888899999999998765
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=7.1e-07 Score=92.21 Aligned_cols=216 Identities=11% Similarity=0.019 Sum_probs=144.9
Q ss_pred ceeeeecCCCC--CeEEEEEecCCCcEEEEEeC--CCcEEEEEeecceeeEeeccccc-ceEEEEEccCCCEE-EEEeCC
Q 001224 856 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNVL-VSSGAD 929 (1120)
Q Consensus 856 ~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l-~s~s~D 929 (1120)
+.+.++. |.. ....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-... ....+++. ++.| ++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4555664 443 368999999 6766655543 57999999999998887652221 22345554 4455 455567
Q ss_pred CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCC---Cee
Q 001224 930 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PIT 1005 (1120)
Q Consensus 930 g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~---~v~ 1005 (1120)
+.+.++|..+.+...... .+ .+ ....+++||+.++++ .++.|.++|..+.+.+..+....+.. .+.
T Consensus 86 ~~v~viD~~t~~v~~~i~----~g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFT----HQ-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp SEEEEEETTTTEEEEEEE----CC-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CEEEEEECCCCcEEEEEE----CC-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 899999999865433211 11 11 224466788877775 56799999999998888876543222 366
Q ss_pred EEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccC----CCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEE
Q 001224 1006 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus 1006 ~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~----~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
.+.|. +|+..+....++.|.+.|..+++.+..+......+ .++ .....+..++|+|+...+++++...+.+++-
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 88888 77655555567899999999999999987432111 110 1113345899999655677888889999999
Q ss_pred ecCCCC
Q 001224 1082 EPLESE 1087 (1120)
Q Consensus 1082 ~~~~~~ 1087 (1120)
++...+
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 988754
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.70 E-value=1.4e-06 Score=90.09 Aligned_cols=200 Identities=10% Similarity=0.051 Sum_probs=136.8
Q ss_pred CccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224 826 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 901 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 901 (1120)
....++|++|+...++.+ ++.|+++|+.+++.+..+..... ....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999875555443 47899999999999888653222 23455555 4566666667899999999999998
Q ss_pred EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001224 902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 980 (1120)
Q Consensus 902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~ 980 (1120)
.++..-... ...+++||+.|+.+..++.|.++|..+.+.......... +.. ...+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence 888533111 244666888777777788999999988654333222211 100 0124577777 77655554 5789
Q ss_pred EEEEEcCCceeeeccccCC---------C--CCCeeEEEECCCCcEEEE-EEcCCcEEEEEcCCc
Q 001224 981 LAIFETTKLECVKQWVPRE---------S--SAPITHATFSCDSQLVYA-CFLDATVCVFSAANL 1033 (1120)
Q Consensus 981 v~i~d~~~~~~~~~~~~~~---------h--~~~v~~l~~s~dg~~l~s-~~~Dg~v~iwd~~~~ 1033 (1120)
|.+.|..+++.+..+...+ + ......|+|+|+++.|++ +...+.|++.++.+.
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999988876421 0 135689999999876554 546788998887664
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.67 E-value=1.2e-05 Score=85.20 Aligned_cols=202 Identities=10% Similarity=-0.023 Sum_probs=132.1
Q ss_pred CccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224 826 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 903 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 903 (1120)
.+..+++++++..|..+. ++.|..++.........+.........++++++++.++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999877777766 688999999765543334333356899999994455555555678999999764322222
Q ss_pred ecccccceEEEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001224 904 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 978 (1120)
Q Consensus 904 l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d 978 (1120)
..........++++|++..|..+.. .+.|..++++.... ..+..... .....+++++++..|.++ ..
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~~~~~~-----~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQDNL-----GLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEECTTC-----SCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEEEECCC-----CCCcEEEEcCCCCEEEEEECCC
Confidence 2222245689999997666655543 36788888765321 11111111 245889999988777664 56
Q ss_pred CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224 979 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 979 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+.|.++|........... . ......+++ |+..|+.+. ..+.|.++|..+++.+..+.
T Consensus 189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TEEEEEETTEEEEEEEEE--C-CCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CEEEEEecCCCceEEEec--C-CCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 789999998654433322 1 234566765 355555555 45899999999999988876
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.66 E-value=1.9e-06 Score=104.06 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=112.1
Q ss_pred EEEEEecCCCcEEEEEeCCC-------------------cEEEEEeecceeeEeecc--cc-------cceEEEEEccCC
Q 001224 869 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 920 (1120)
Q Consensus 869 ~~l~~sp~d~~~lasg~~dg-------------------~v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 920 (1120)
..++++| +..+++.++.++ .|..+|..+|+.+..++. |. .+.....+..+|
T Consensus 233 ~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 233 DSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 3578888 667888887766 399999999998877654 32 222223333467
Q ss_pred C---EEEEEeCCCCEEEEECCCcccccceeeec---------cCCC-------C-C-----------CCCCCcEEEEccC
Q 001224 921 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---------PTGR-------T-P-----------TAQSDTRVQFHQD 969 (1120)
Q Consensus 921 ~---~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~---------~~~~-------~-~-----------~~~~i~~~~fspd 969 (1120)
+ .|+.++.+|.+.++|..+|+......... ..+. . . ....-..++++|+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence 5 68899999999999999987642111000 0000 0 0 0000123788888
Q ss_pred CcEEEEE-------------------------------------eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCC
Q 001224 970 QIHFLVV-------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD 1012 (1120)
Q Consensus 970 g~~la~~-------------------------------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d 1012 (1120)
..++.+. .++.|..||+.+++.+-.... ..++....+...
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~ 468 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTA 468 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEET
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeC
Confidence 7766541 127799999999998765542 223333445557
Q ss_pred CcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 1013 SQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 1013 g~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+.++++++.||.|++||..+|+.+.++.
T Consensus 469 gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 469 GNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCcccchhhhhhcChhheEec
Confidence 8889999999999999999999999887
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.65 E-value=1.2e-05 Score=94.66 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=103.7
Q ss_pred EEEEecCCCcEEEEEeCC----------------CcEEEEEeecceeeEeecccc----------cceEEEEEc-cCC--
Q 001224 870 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKGHS----------KRITGLAFS-HAL-- 920 (1120)
Q Consensus 870 ~l~~sp~d~~~lasg~~d----------------g~v~vwd~~~~~~~~~l~~h~----------~~V~~l~~s-~d~-- 920 (1120)
.+++.+ +..++..+..+ +.|.-+|..+|+.+..++... .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456777 55566666655 379999999999887665421 1121 2222 467
Q ss_pred -CEEEEEeCCCCEEEEECCCcccccceeeec----------cCCCC---------------------CCCCCCcEEEEcc
Q 001224 921 -NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT---------------------PTAQSDTRVQFHQ 968 (1120)
Q Consensus 921 -~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~----------~~~~~---------------------~~~~~i~~~~fsp 968 (1120)
+.++.++.+|.+.+.|..+++......... ..+.. .....-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567888999999999999987644322110 00000 0000113567777
Q ss_pred CCcEEEEE----------------------------------------eCCeEEEEEcCCceeeeccccCCCCCCeeEEE
Q 001224 969 DQIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHAT 1008 (1120)
Q Consensus 969 dg~~la~~----------------------------------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~ 1008 (1120)
+..++.+. ..+.|..||+.+++.+-..... .++..-.
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~ 479 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT 479 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence 76665541 2357888898888876554321 1121111
Q ss_pred ECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 1009 FSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 1009 ~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+...+.+++.++.||.++.||..+|+.+.+++
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 23356777889999999999999999998887
No 253
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.64 E-value=0.0034 Score=77.42 Aligned_cols=533 Identities=12% Similarity=0.080 Sum_probs=272.4
Q ss_pred CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 443 (1120)
...|.++....+|. |-.|+.+| +..||..+.+... . .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~--~-----------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ--P-----------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC--C-----------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC--c-----------------ccCCCceEEEEEe-cCC-cEEE
Confidence 45689988888886 45555554 7899987753211 0 0111235777764 345 4555
Q ss_pred EECCCeEEEEEccCCceeeeeeee-cc-cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-ecc----cc
Q 001224 444 AYSRHIVQIYSYHGGDEVRQHLEI-DA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGH----EA 516 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~~~~~~~~~l-~~-h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h----~~ 516 (1120)
|+.+ -+..+|..+++... .... .+ ....|.++....+|. +.+ |+.+ -|..+|..+++..... ... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 58888987765321 1000 01 134688888888887 333 4444 4778887766543211 111 12
Q ss_pred CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~ 596 (1120)
.|.++.. +.++..|..|+. +-+..+|..+.... .+. . .....+..+..+.++. |.
T Consensus 192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~-~~~-------~-------------l~~~~i~~i~~d~~g~-lW 246 (758)
T 3ott_A 192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIK-QTE-------A-------------FHNNSIKSLALDGNGD-LL 246 (758)
T ss_dssp CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEE-EEE-------E-------------EEEEEEEEEEECTTCC-EE
T ss_pred eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEE-ecc-------C-------------CCCCeEEEEEEcCCCC-EE
Confidence 3777664 333334444443 45777776542211 110 0 0112345555555555 44
Q ss_pred EEeCCCeEEEEECCCCceeEEEecCC------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccc
Q 001224 597 AAGDDFSIKFWDMDSVQLLTSIDADG------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 670 (1120)
Q Consensus 597 ~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 670 (1120)
.|+. +-+.+++..++.... +.... ....|.++....+|.+.+ |+..| +.++.. .. ..+.+
T Consensus 247 igT~-~Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~-~~--~~~~~------- 312 (758)
T 3ott_A 247 AGTD-NGLYVYHNDTTPLQH-IIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRY-NS--ALQFI------- 312 (758)
T ss_dssp EEET-TEEEEECCTTSCCEE-ECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECC-CC---CEEE-------
T ss_pred EEeC-CceeEEecCCCcEEE-EEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccccc-CC--ceeEE-------
Confidence 4554 458888887665432 22111 113467777777776554 44555 443321 11 00000
Q ss_pred cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeec
Q 001224 671 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 750 (1120)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 750 (1120)
....
T Consensus 313 -----------------------------------------------------------------~~~~----------- 316 (758)
T 3ott_A 313 -----------------------------------------------------------------PISQ----------- 316 (758)
T ss_dssp -----------------------------------------------------------------EHHH-----------
T ss_pred -----------------------------------------------------------------eccc-----------
Confidence 0000
Q ss_pred cCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEE
Q 001224 751 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 830 (1120)
Q Consensus 751 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l 830 (1120)
.........|.++....+|...+ ++.+|. ..++....... .+..+...... ..-....|.++
T Consensus 317 ~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl-~~~~~~~~~~~---------~~~~~~~~~~~-------~~l~~~~v~~i 378 (758)
T 3ott_A 317 ITGTGDGNQFYSLFRDSKGFYWF-GGANGL-IRFTDPAGERH---------DAIWYRMGDKT-------YPLSHNRIRHI 378 (758)
T ss_dssp HSCSCCCCBEEEEEECTTCCEEE-EETTEE-EEESCTTSSCC---------CCEEECTTCSS-------SCCSCSCEEEE
T ss_pred CCCCCCCceEEEEEEcCCCCEEE-eeCCcc-eeecccccccc---------eeEEeccCCcC-------CCCCCCceEEE
Confidence 00000124567777777887444 445553 33332110000 00111100000 00023568888
Q ss_pred EEccCCCEEEEEeCCcEEEEEcCCCceeeee--cC----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc------
Q 001224 831 ALSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------ 898 (1120)
Q Consensus 831 ~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~--~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~------ 898 (1120)
.-..+|+..+ |+++.|..+|..+++..... .. ....|.++...+ +++ |-.|+..+-|.++|..+.
T Consensus 379 ~~d~~g~lWi-gt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~ 455 (758)
T 3ott_A 379 YEDKEQQLWI-ATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSG 455 (758)
T ss_dssp EECTTSCEEE-EETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSS
T ss_pred EECCCCCEEE-EeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCc
Confidence 8888887555 34668999998876543221 11 123578887776 555 445776667888886531
Q ss_pred eee--Eeec---c-cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224 899 EVK--SKLK---G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 972 (1120)
Q Consensus 899 ~~~--~~l~---~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~ 972 (1120)
... ..+. + ....|.++...++|.+.+.++..+-|..+|..+++.. ............+.++....+|.+
T Consensus 456 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~-----~~~~~~~~~~~~~~~i~~d~~g~l 530 (758)
T 3ott_A 456 QYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT-----KLFADELTGEKSPNYLLCDEDGLL 530 (758)
T ss_dssp EEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE-----EECTTTSCGGGCEEEEEECTTSCE
T ss_pred ceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE-----EecCCCcCCCcccceEEECCCCCE
Confidence 111 1111 1 1235889999888887763333445888888764321 111111111135677888888887
Q ss_pred EEEEeCCeEEEEEcCCceeeeccccCC-CCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCC
Q 001224 973 FLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1051 (1120)
Q Consensus 973 la~~~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~ 1051 (1120)
.+.+ .+.+..|+..++.... +...+ ....|.++... +|.+ ..++..| +..||..+.+... +. ++..
T Consensus 531 Wigt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~l-Wi~t~~G-l~~~~~~~~~~~~-~~----~~~~--- 597 (758)
T 3ott_A 531 WVGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSI-WVSTTNG-LWIIDRKTMDARQ-QN----MTNK--- 597 (758)
T ss_dssp EEEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEE-EEEESSC-EEEEETTTCCEEE-C------CCC---
T ss_pred EEEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CCCE-EEECCCC-eEEEcCCCceeEE-ec----CCCC---
Confidence 7655 4678889877664322 11111 13568888764 6654 4455555 7778988776542 11 2211
Q ss_pred CCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1052 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1052 ~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
... ...+...+ ..|..|+.+| +..+++..
T Consensus 598 -~~~--~~~~~~~~-G~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 598 -RFT--SLLFDPKE-DCVYLGGADG-FGISHSNL 626 (758)
T ss_dssp -CCS--EEEEETTT-TEEEEECBSE-EEEEEC--
T ss_pred -cee--eeEEECCC-CcEEEecCCc-eEEEChhh
Confidence 122 34444334 4677777777 45667654
No 254
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.63 E-value=0.0047 Score=78.35 Aligned_cols=215 Identities=10% Similarity=0.088 Sum_probs=121.0
Q ss_pred cCceeecCCCCCcccc-cCCCCCCCCCccEEEE---ccC-CCEEEEEe-----------CCcEEEEEcCCCceeeee-cC
Q 001224 801 VAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFAL---SKN-DSYVMSAS-----------GGKISLFNMMTFKTMATF-MP 863 (1120)
Q Consensus 801 ~~~~~w~~~~g~~~~~-~~~~~~~~~~v~~l~~---s~d-~~~l~~~s-----------dg~i~vwd~~~~~~~~~~-~~ 863 (1120)
..+++.|+.+.+.+.. .+. ....+.+++. ..+ ..++++|. .|.|.+|++..++..... ..
T Consensus 807 s~i~lidp~t~~~i~~~~l~---~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~ 883 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFL---QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE 883 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECC---TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEeCCCCeEEEEEeCC---CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence 3466777776664322 222 3444555543 222 46888774 256999998744322111 12
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccc
Q 001224 864 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 943 (1120)
Q Consensus 864 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~ 943 (1120)
..+.+++++-- +|++||.. ...|++|++...+.+..-..+-..|..+.....+++++.|+.-..|.+...+..+.
T Consensus 884 v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~- 958 (1158)
T 3ei3_A 884 VKGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG- 958 (1158)
T ss_dssp ESSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTT-
T ss_pred cCCcCEEEeee--CCEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCC-
Confidence 35678887754 46555533 57899999986654331111122233333333578999998888887776544222
Q ss_pred cceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce----------eeeccccCCCCCCeeEEE---EC
Q 001224 944 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE----------CVKQWVPRESSAPITHAT---FS 1010 (1120)
Q Consensus 944 ~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~----------~~~~~~~~~h~~~v~~l~---~s 1010 (1120)
.......... ...++++.|-.++.++++-.++.+.++...... ....+. ....|+++. +.
T Consensus 959 --~L~~~a~D~~--~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fh---lG~~vt~~~~~sl~ 1031 (1158)
T 3ei3_A 959 --NFEEIARDFN--PNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFH---LGEFVNVFCHGSLV 1031 (1158)
T ss_dssp --EEEEEEECCS--CBCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEE---CSSCEEEEEECCSC
T ss_pred --eEEEEEeecc--cccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEe---CCCcEeeEEeeeee
Confidence 1111111111 146788888877766666688899988765421 111221 155677775 33
Q ss_pred CCC---------cEEEEEEcCCcEEEEEc
Q 001224 1011 CDS---------QLVYACFLDATVCVFSA 1030 (1120)
Q Consensus 1011 ~dg---------~~l~s~~~Dg~v~iwd~ 1030 (1120)
+.+ ..++.++.+|.|.+.--
T Consensus 1032 ~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1032 MQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp CC-------CEEEEEEEEETTSCEEEEEE
T ss_pred cCCCccccccccceEEEEecCCEEEEEEE
Confidence 332 34777888999887743
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.62 E-value=4.9e-06 Score=100.43 Aligned_cols=212 Identities=14% Similarity=0.048 Sum_probs=125.2
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeecccc-------cCe-EEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-------GGV-NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 509 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~-------~~V-~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~ 509 (1120)
+..|.+++.++.|.-+|..+|+.+-....-.... ..+ ..+++ ++. .++.++.|+.|..+|..+|+.+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGD--KVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBT--EEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECC--EEEEEcCCCEEEEEECCCCCEee
Confidence 6677778889999999999998765321100000 001 11222 234 47778889999999999999998
Q ss_pred Eeeccc----cCeEE-EeeccCCCceEEEEEec------CCeEEEEecCCCCCceeeeCCCC-ceeE-----E--EE-cC
Q 001224 510 IFEGHE----APVYS-VCPHHKENIQFIFSTAL------DGKIKAWLYDNLGSRVDYEAPGR-WCTT-----M--AY-SA 569 (1120)
Q Consensus 510 ~~~~h~----~~v~~-~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~-~v~~-----~--~~-s~ 569 (1120)
.+.... ..+.+ ..+ .++ .++.+.. +|.|..+|..+++.+..+..... .... + .. .-
T Consensus 142 ~~~~~~~~~~~~~~~~P~v---~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 217 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRV---VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW 217 (668)
T ss_dssp EEECSCTTSSCBCCSCCEE---ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred eeccCCCCCcceecCCCEE---ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence 776421 11110 011 122 4444433 58999999999888877653211 0000 0 00 00
Q ss_pred CCCeEEec-ccccceeEEEEcCCCCEEEEEeCCC-------------------eEEEEECCCCceeEEEecCCCC-----
Q 001224 570 DGTRTYQG-FRKRSLGVVQFDTTKNRFLAAGDDF-------------------SIKFWDMDSVQLLTSIDADGGL----- 624 (1120)
Q Consensus 570 ~g~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~----- 624 (1120)
++...+.. ........++++++.+.++.++.++ .|..+|.++|+.+..++...+.
T Consensus 218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~ 297 (668)
T 1kv9_A 218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT 297 (668)
T ss_dssp CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence 00000000 0111223467888888888887766 4999999999999888753221
Q ss_pred --CCcCeEEEcCCCC---EEEEEECCCcEEEEEccCcc
Q 001224 625 --PASPRIRFNKDGC---LLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 625 --~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~ 657 (1120)
.......+..+|+ .++.++.+|.++++|..+++
T Consensus 298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 1111122223665 68889999999999999983
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.59 E-value=9.1e-07 Score=89.80 Aligned_cols=198 Identities=13% Similarity=0.075 Sum_probs=131.3
Q ss_pred ceeeeecCCCCC--eEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE--EEEccCCCEEEEEeCCCC
Q 001224 856 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG--LAFSHALNVLVSSGADSQ 931 (1120)
Q Consensus 856 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~--l~~s~d~~~l~s~s~Dg~ 931 (1120)
+.+.++. |... ...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ - ...... +++.. ++..+..-.++.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCE
Confidence 3445553 4433 4788887 5788888888999999999999988877 2 233333 45532 234444556889
Q ss_pred EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCC---CeeEE
Q 001224 932 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHA 1007 (1120)
Q Consensus 932 v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~---~v~~l 1007 (1120)
+.+||.++.+....... . + ....+++|++.|+++ .++.|.++|..+.+.+..+....+.. .+..+
T Consensus 118 v~V~D~~Tl~~~~ti~~--~-~--------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRY--S-G--------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp EEEEETTTTEEEEEEEC--S-S--------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEEECCcCcEEEEEeC--C-C--------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence 99999999665433222 1 1 123344677877775 57899999999999988877544333 34667
Q ss_pred EECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCC----CCCCCCccceEEEecCCCCCEEEEE
Q 001224 1008 TFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA----GVSSSNVHPLVIAAHPQEPNEFALG 1072 (1120)
Q Consensus 1008 ~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~i~~~p~d~~~l~s~ 1072 (1120)
.|. +|+..+....+..|.+.|..+|+.+..+......+. .+... -.+-.|||+|....+++||
T Consensus 187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~-~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE-AVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT-CCEEEEEECTTTCCEEEEE
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcC-CceEEEEEcCCCCEEEEeC
Confidence 776 777665555678999999999999999885432210 00111 1234899999655666665
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.59 E-value=1.6e-06 Score=88.13 Aligned_cols=201 Identities=9% Similarity=0.081 Sum_probs=131.1
Q ss_pred ceeeeecCCCCC--eEEEEEecCCCcEEEEEeCCC--cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEE-eCCC
Q 001224 856 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS-GADS 930 (1120)
Q Consensus 856 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~Dg 930 (1120)
+.++++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-.. ........+++..|... -.++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence 3455664 5444 4789998 467777777776 99999999999888876433 33333333345555544 4588
Q ss_pred CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCC---CCeeE
Q 001224 931 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH 1006 (1120)
Q Consensus 931 ~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~---~~v~~ 1006 (1120)
.+.+||.++.+........ + ....+++|++.|+.+ .++.|.++|..+.+.+..+...... ..+..
T Consensus 108 ~v~v~D~~t~~~~~ti~~~---~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYD---G--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE 176 (262)
T ss_dssp EEEEEETTTCCEEEEEECS---S--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred EEEEEECccCcEEEEEECC---C--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence 8999999986653322221 1 223445677777774 4678999999999988887653322 33455
Q ss_pred EEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCC--CCCCccceEEEecCCCCCEEEEEe
Q 001224 1007 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV--SSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus 1007 l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
+.|. +|+..+..-.+..|.+.|..+|+.+..+......+... ....-.+-.|||+|. .+.|.+.+
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~-~~~lfVTG 243 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE-HHRLFVTG 243 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT-TTEEEEEE
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC-CCEEEEEC
Confidence 7776 78766655568899999999999999988553332210 011112348999995 45554444
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.58 E-value=2.2e-05 Score=92.51 Aligned_cols=196 Identities=9% Similarity=-0.091 Sum_probs=117.6
Q ss_pred EEEEccCCCEEEEEe-C----------------CcEEEEEcCCCceeeeecC--CC-------CCeEEEEEecCCC---c
Q 001224 829 CFALSKNDSYVMSAS-G----------------GKISLFNMMTFKTMATFMP--PP-------PAATFLAFHPQDN---N 879 (1120)
Q Consensus 829 ~l~~s~d~~~l~~~s-d----------------g~i~vwd~~~~~~~~~~~~--~~-------~~i~~l~~sp~d~---~ 879 (1120)
.+++.++...+..+. + +.|..+|..+++.+-.++. |. ....-+.... ++ +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 356666666666554 2 2599999999998766642 21 1112223334 56 4
Q ss_pred EEEEEeCCCcEEEEEeecceeeEeecccc-------------cce--------------------------EEEEEccCC
Q 001224 880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHS-------------KRI--------------------------TGLAFSHAL 920 (1120)
Q Consensus 880 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~d~ 920 (1120)
+++.++.+|.++++|..+|+.+....... .+| ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67889999999999999998876653211 111 246788888
Q ss_pred CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCC
Q 001224 921 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 1000 (1120)
Q Consensus 921 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h 1000 (1120)
.+|.....+....++.....- ..+. ...+....+..+|.+. ....++.|..||+.+++.+-.+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~---------~~g~-~~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~-- 463 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPY---------RAGQ-FFVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK-- 463 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCC---------CTTS-CCCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred CEEEEEchhcccccccccccc---------ccCC-ccccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence 888887777655555443210 0010 0000001122233221 0013467888999888876655432
Q ss_pred CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 1001 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 1001 ~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
..+.+..+...+.++++++.||.|+.||..+|+.+.++.
T Consensus 464 -~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 464 -FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp -SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 222222333356677779999999999999999998887
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.56 E-value=2.3e-06 Score=87.00 Aligned_cols=187 Identities=10% Similarity=0.076 Sum_probs=125.7
Q ss_pred ccEEEEccCCCEEEEEe-CC--cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224 827 VPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 903 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~s-dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 903 (1120)
...+.|+ ++.+..+.+ +| .|+++|+++++.+..+.... ......+.++++++.+..-.++.+.+||..+.+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4778898 665555554 55 79999999999988876433 3333323332455666666789999999999999988
Q ss_pred ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEE
Q 001224 904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 982 (1120)
Q Consensus 904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~ 982 (1120)
+.... ....+++|++.|+....++.|.++|..+.+......... .+.. ...+..+.|. +|+..+.. .++.|.
T Consensus 123 i~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~--~~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 123 FNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEE--LPELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp EECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCcc--ccccceeEEE-CCEEEEEEccCCeEE
Confidence 87533 223444678877776667889999998866543322221 1111 0123346666 77655554 678999
Q ss_pred EEEcCCceeeeccccCCC----------CCCeeEEEECCCCcEEEEEEcC
Q 001224 983 IFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLD 1022 (1120)
Q Consensus 983 i~d~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~~~D 1022 (1120)
+.|..+++.+..+...+- ..-...|||+|+++.|++++..
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 999999999887765321 2345889999998888777643
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.55 E-value=2.7e-05 Score=91.86 Aligned_cols=82 Identities=10% Similarity=0.057 Sum_probs=52.9
Q ss_pred CCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001224 887 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 966 (1120)
Q Consensus 887 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 966 (1120)
+|.|..||+.+++.+.++... ..+.+..+...+..++.++.|+.|+.||..+++...... ...+. ....+.+
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~--~~~~~-----~~~p~~~ 514 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK--MPSGG-----IGSPMTY 514 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCC-----CSCCEEE
T ss_pred CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe--CCCCc-----EeeeEEE
Confidence 578999999999887776532 233333334456677789999999999999987643322 22111 1133456
Q ss_pred ccCCcEEEEE
Q 001224 967 HQDQIHFLVV 976 (1120)
Q Consensus 967 spdg~~la~~ 976 (1120)
..+|++++..
T Consensus 515 ~~~G~~yv~~ 524 (571)
T 2ad6_A 515 SFKGKQYIGS 524 (571)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
Confidence 6788766654
No 261
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.49 E-value=0.0001 Score=77.82 Aligned_cols=224 Identities=12% Similarity=0.032 Sum_probs=136.8
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 444 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 444 (1120)
..+.+++|+|++..|+++...++.|.+++..++.... +..........+++++++..|..+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-------------------~~~~~~~~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------------------IIRQDLGSPEGIALDHLGRTIFWT 96 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-------------------EEECCCCCccEEEEEecCCeEEEE
Confidence 4578999999888777777778999999997654321 111222467899999976666655
Q ss_pred -ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC--CCcEEEEECCCCceeEEee-ccccCeEE
Q 001224 445 -YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFE-GHEAPVYS 520 (1120)
Q Consensus 445 -~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~-~h~~~v~~ 520 (1120)
...+.|.+++.++..... ...........++++|++..+| ++... .+.|..+++.. .....+. ........
T Consensus 97 d~~~~~I~~~~~~g~~~~~---~~~~~~~~P~~i~vd~~~g~ly-v~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 97 DSQLDRIEVAKMDGTQRRV---LFDTGLVNPRGIVTDPVRGNLY-WTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNG 171 (267)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEETTTTEEE-EEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEE
T ss_pred ECCCCEEEEEEcCCCCEEE---EEECCCCCccEEEEeeCCCEEE-EEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcE
Confidence 456789999987643211 1222224678999999777533 33332 46888888753 3333332 22345677
Q ss_pred EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 600 (1120)
Q Consensus 521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 600 (1120)
+++++.. +.+.++-...+.|..+|........... ... ....++.. .+..+++...
T Consensus 172 ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~---------------------~P~gi~~d-~~~lyva~~~ 227 (267)
T 1npe_A 172 LTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQ---------------------YPFAVTSY-GKNLYYTDWK 227 (267)
T ss_dssp EEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEE-CCC---------------------SEEEEEEE-TTEEEEEETT
T ss_pred EEEcCCC-CEEEEEECCCCEEEEEecCCCceEEEec-CCC---------------------CceEEEEe-CCEEEEEECC
Confidence 8875432 2444555567889999886422111111 001 11223333 2233444446
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC
Q 001224 601 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 637 (1120)
Q Consensus 601 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 637 (1120)
.+.|.++|..+++.+..+.... ......+++.|++.
T Consensus 228 ~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 228 TNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred CCeEEEEeCCCCCceEEEcccc-ccccceeeecCccC
Confidence 7899999999999888886432 12367788888764
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.48 E-value=0.00013 Score=86.05 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=93.8
Q ss_pred CcEEEEEeecceeeEeecc--ccc----ceEE-EEEc---cCCC---EEEEEeCCCCEEEEECCCcccccceeeec----
Q 001224 888 SSIQIYNVRVDEVKSKLKG--HSK----RITG-LAFS---HALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---- 950 (1120)
Q Consensus 888 g~v~vwd~~~~~~~~~l~~--h~~----~V~~-l~~s---~d~~---~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~---- 950 (1120)
+.|.-+|..+|+.+-.++. |.. .+.. +.+. .+|+ .++.++.+|.+.++|..+++.........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 5899999999998877643 321 1111 2222 4674 78889999999999999987643222110
Q ss_pred --------------cCCCC----------------CCC---CCCcEEEEccCCcEEEE-Ee-------------------
Q 001224 951 --------------PTGRT----------------PTA---QSDTRVQFHQDQIHFLV-VH------------------- 977 (1120)
Q Consensus 951 --------------~~~~~----------------~~~---~~i~~~~fspdg~~la~-~~------------------- 977 (1120)
..... +.. ..-..++++|+..++.+ ..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 00000 000 00124677777555544 21
Q ss_pred --------------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 978 --------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 978 --------------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
++.|..||+.+++.+-..... .++..-.+...+.+++.|+.||.++.||..+|+.+.+++
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 467999999999887554422 122221222246778889999999999999999999887
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.46 E-value=6.3e-05 Score=82.07 Aligned_cols=239 Identities=13% Similarity=0.082 Sum_probs=146.0
Q ss_pred CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec--C------------------CCCCeEEEEEecCCCcEEEE
Q 001224 825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM--P------------------PPPAATFLAFHPQDNNIIAI 883 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~--~------------------~~~~i~~l~~sp~d~~~las 883 (1120)
....+++++++++++.++. ++.|..|+..++... .+. . ....+..++++++++++ .+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l-~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL-YI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE-EE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcE-EE
Confidence 3456789999998677776 789999998765432 221 0 01357889999734554 44
Q ss_pred EeCCCcEEEEEeecceeeEeec----c-cccceEEEEEcc-CCCEEEEEeC-----------------CCCEEEEECCCc
Q 001224 884 GMDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGW 940 (1120)
Q Consensus 884 g~~dg~v~vwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~s~-----------------Dg~v~iWd~~~~ 940 (1120)
+...+.|..+|..+++. ..+. + .......+++.+ +|++.++-.. ++.|..||..++
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 54455588888765532 2221 1 123467899999 9987776432 366888887665
Q ss_pred ccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce--eeeccccCCCCCCeeEEEECCCCcEE
Q 001224 941 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLV 1016 (1120)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l 1016 (1120)
+... ..... .....++++|+|+.|.++ ..+.|.+|++.... ....+.. ..+ ...+++.++|++.
T Consensus 176 ~~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 176 ETTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFW 243 (322)
T ss_dssp EEEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEE
T ss_pred EEEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEE
Confidence 4211 11111 134689999999876664 56789999987521 1111111 123 7889999999877
Q ss_pred EEEEc----------CCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224 1017 YACFL----------DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1017 ~s~~~----------Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
++... .+.|..+|. .++.+..+. .+.|... ..+..+++. +++++++....+.|.++++...
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~----~~~g~~~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP----LPPPFAG--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE----CCTTTTT--SCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred EEecCcccccccCCCccEEEEECC-CCCEEEEEE----CCCCCcc--ccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 66544 467888886 477776665 2322111 122256663 4666666667889999987654
Q ss_pred C
Q 001224 1087 E 1087 (1120)
Q Consensus 1087 ~ 1087 (1120)
.
T Consensus 315 ~ 315 (322)
T 2fp8_A 315 G 315 (322)
T ss_dssp -
T ss_pred c
Confidence 3
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.46 E-value=9.5e-05 Score=87.19 Aligned_cols=210 Identities=11% Similarity=-0.021 Sum_probs=120.8
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeeeecccccC-------eEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGG-------VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 510 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~-------V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 510 (1120)
+..|.+++.++.|.-+|.++|+.+-... +...... -..++. .+. .++.++.|+.|.-+|..+|+.+..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence 4455556664458889999998765332 1111000 011222 233 377778899999999999999877
Q ss_pred eecccc----CeE-EEeeccC-CCce-EEEEEec------CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEE--
Q 001224 511 FEGHEA----PVY-SVCPHHK-ENIQ-FIFSTAL------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY-- 575 (1120)
Q Consensus 511 ~~~h~~----~v~-~~~~~~~-~~~~-~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~-- 575 (1120)
...... .+. +..+... .+++ .++.++. ++.|..+|..+++.+.........+ .|++.+.+
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~-----~p~~~~~~~~ 217 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHM-----GRLNGKDSTV 217 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCE-----EEETTEEEEE
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccc-----ccccCccccc
Confidence 653321 111 0011111 1222 5655543 7899999999988877654322111 11111000
Q ss_pred ---------ecc--------------cccceeEEEEcCCCCEEEEEeC--------------------C----CeEEEEE
Q 001224 576 ---------QGF--------------RKRSLGVVQFDTTKNRFLAAGD--------------------D----FSIKFWD 608 (1120)
Q Consensus 576 ---------~~~--------------~~~~i~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd 608 (1120)
.+. ....-...+++|+...++.+.. | +.|..+|
T Consensus 218 ~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD 297 (582)
T 1flg_A 218 TGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVD 297 (582)
T ss_dssp SSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEEC
T ss_pred ccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEe
Confidence 000 0011124567777777776653 2 6899999
Q ss_pred CCCCceeEEEecCCCC----CCcCe-EEEc---CCCC---EEEEEECCCcEEEEEccCcc
Q 001224 609 MDSVQLLTSIDADGGL----PASPR-IRFN---KDGC---LLAVSTNDNGIKILATSDGI 657 (1120)
Q Consensus 609 ~~~~~~~~~~~~~~~~----~~v~~-~~~s---~~~~---~l~~~~~dg~i~iwd~~~~~ 657 (1120)
..+|+.+..++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+++
T Consensus 298 ~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 298 PSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 9999999888653221 01111 2222 4674 78889999999999999883
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.44 E-value=0.00015 Score=78.44 Aligned_cols=246 Identities=13% Similarity=0.056 Sum_probs=144.1
Q ss_pred CCCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224 351 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 430 (1120)
Q Consensus 351 ~~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 430 (1120)
+..+.++...+........++|+|+|+ |+++...++.|..||..... ... +. ......
T Consensus 18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~~-----~~---------------~~~~p~ 75 (306)
T 2p4o_A 18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QIH-----AT---------------VEGKVS 75 (306)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EEE-----EE---------------CSSEEE
T ss_pred cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EEE-----Ee---------------CCCCce
Confidence 334555666666567889999999998 67777778999999987532 211 11 123688
Q ss_pred EEEEcCCCCeEEEEECC-C-eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce-
Q 001224 431 RVIWSPDGSLFGVAYSR-H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK- 507 (1120)
Q Consensus 431 ~l~~spdg~~las~~~d-g-~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~- 507 (1120)
.++++++|+++++.... + .|..++..+++.. ....+. .......++..+++. .+++...++.|.++|..++..
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence 99999999976665443 2 4666777777632 222221 122335556555554 556666688899999776532
Q ss_pred eEEeec---------cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecc
Q 001224 508 QYIFEG---------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 578 (1120)
Q Consensus 508 ~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 578 (1120)
+....+ .......+ +++. +.+.++-...+.|..+++....... ...+.. .+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~~~-~~----------- 211 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-----EPEIFV-EQ----------- 211 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC-----CCEEEE-ES-----------
T ss_pred EEEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC-----ccEEEe-cc-----------
Confidence 211111 11123334 2322 2344555567889999887421110 000000 00
Q ss_pred cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc---CCCCEEEEEECC
Q 001224 579 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTND 645 (1120)
Q Consensus 579 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~d 645 (1120)
.....++++++|+.+++....+.|.+++.. ++...............+++|. |+++.|++.+..
T Consensus 212 --~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 212 --TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp --CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 012336777777777776678899999975 5543321112222357889998 888888777654
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.44 E-value=4.8e-06 Score=84.55 Aligned_cols=183 Identities=9% Similarity=0.050 Sum_probs=123.5
Q ss_pred ccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeE--EEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224 827 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT--FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 903 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~--~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 903 (1120)
...+.|+. +.+..+.+ +|.|+++|+++++.++.+ - ..... .+++. ++++.+..-.++.+.+||..+.+.+.+
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 46788873 44444444 788999999999998887 2 23333 35554 456666666789999999999999998
Q ss_pred ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEE
Q 001224 904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 982 (1120)
Q Consensus 904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~ 982 (1120)
+... ..=+.++ +|++.|+.+..++.|.++|..+.+............. ...+..+.|. +|+..+.. .+..|.
T Consensus 132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~---v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP---VELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc---cccccccEEe-CCEEEEEECCCCeEE
Confidence 8753 2224444 5788888777788999999988765433322221111 0133556666 77655554 678999
Q ss_pred EEEcCCceeeeccccCC-----------CCCCeeEEEECCCCcEEEEEEc
Q 001224 983 IFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus 983 i~d~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
+.|..+++.+..+...+ -..-...|+++|+++.|++.+.
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99999999887765421 1235689999998776666653
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.42 E-value=3.5e-05 Score=90.62 Aligned_cols=250 Identities=11% Similarity=0.062 Sum_probs=149.2
Q ss_pred EEEccCCCE----EEEEe-CCcEEEEEcCCCceeeeecCCC----CCeEE-EEEecCCCcEEEEEe------CCCcEEEE
Q 001224 830 FALSKNDSY----VMSAS-GGKISLFNMMTFKTMATFMPPP----PAATF-LAFHPQDNNIIAIGM------DDSSIQIY 893 (1120)
Q Consensus 830 l~~s~d~~~----l~~~s-dg~i~vwd~~~~~~~~~~~~~~----~~i~~-l~~sp~d~~~lasg~------~dg~v~vw 893 (1120)
++++|.+.. +++++ |+.|..+|..+++.+-...... ..+++ -.+. ++. +++++ .+|.|+-+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEE
Confidence 455443333 66676 8999999999999876654322 02221 1222 454 44444 37999999
Q ss_pred EeecceeeEeecccccc-------------------------------------e-EEEEEccCCCEEEEEeCC------
Q 001224 894 NVRVDEVKSKLKGHSKR-------------------------------------I-TGLAFSHALNVLVSSGAD------ 929 (1120)
Q Consensus 894 d~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~s~d~~~l~s~s~D------ 929 (1120)
|..+|+.+-.+...... + ..+++.++...+..+..+
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999988665432110 1 134555666777766655
Q ss_pred ----------CCEEEEECCCcccccceeeeccCCC-CCCCCCCcEEEEc-cCC---cEEEE-EeCCeEEEEEcCCceeee
Q 001224 930 ----------SQLCVWSSDGWEKQKNRFLQIPTGR-TPTAQSDTRVQFH-QDQ---IHFLV-VHETQLAIFETTKLECVK 993 (1120)
Q Consensus 930 ----------g~v~iWd~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fs-pdg---~~la~-~~d~~v~i~d~~~~~~~~ 993 (1120)
+.|..+|.++++..........+.. ........-+... .+| ..++. ..+|.+.++|..+|+.+.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 3789999999876432221111000 0000011112222 567 34554 488999999999998876
Q ss_pred ccccCC-----------CCCC--------------------------eeEEEECCCCcEEEEEE----------------
Q 001224 994 QWVPRE-----------SSAP--------------------------ITHATFSCDSQLVYACF---------------- 1020 (1120)
Q Consensus 994 ~~~~~~-----------h~~~--------------------------v~~l~~s~dg~~l~s~~---------------- 1020 (1120)
...... ...+ -..++|+|+..++++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 543211 0111 13467788777665532
Q ss_pred -----------------------cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCc
Q 001224 1021 -----------------------LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1077 (1120)
Q Consensus 1021 -----------------------~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~ 1077 (1120)
.+|.|..||+.+|+.+-+..... + . .+. .+.. .+.+++.++.||.
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~-~-~~g-----~~~t---agg~vf~gt~dg~ 495 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--A-V-WGG-----TMAT---AGDLVFYGTLDGY 495 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--C-C-CSB-----CEEE---TTTEEEEECTTSE
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--C-c-cCc-----ceEe---cCCEEEEECCCCe
Confidence 34789999999999887765111 1 0 000 1221 3678888999999
Q ss_pred EEEEecCCCCCCCCCCC
Q 001224 1078 VHVFEPLESEGKWGVPP 1094 (1120)
Q Consensus 1078 v~vW~~~~~~~~~~~~~ 1094 (1120)
|+.||..+|+..|...-
T Consensus 496 l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 496 LKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCCEEEEeeC
Confidence 99999999998887643
No 268
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.41 E-value=1.4e-05 Score=80.53 Aligned_cols=201 Identities=12% Similarity=0.134 Sum_probs=129.2
Q ss_pred ceeeeecCCCC--CeEEEEEecCCCcEEEEEeCCC--cEEEEEeecceeeEeecccccceEEEEEccCCCEE-EEEeCCC
Q 001224 856 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL-VSSGADS 930 (1120)
Q Consensus 856 ~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l-~s~s~Dg 930 (1120)
+.+.++ +|.. -...+.|+. +.++.+.+.+| .|+++|+.+++.+..+.-... ........+++.| +..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence 445566 3544 367899985 56777766654 899999999998887754332 2223233334444 4455688
Q ss_pred CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCC---CCeeE
Q 001224 931 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH 1006 (1120)
Q Consensus 931 ~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~---~~v~~ 1006 (1120)
.+.+||.++.+........ + ....+.+|+..|.++ .++.|.++|..+.+.++.+....+. ..+..
T Consensus 86 ~v~v~D~~tl~~~~ti~~~---~--------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP---G--------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEEETTTTEEEEEEECS---S--------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEEECCcCcEEEEEeCC---C--------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 9999999986653322211 1 123444677766664 5778999999999988887754333 23455
Q ss_pred EEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCC---CCCccceEEEecCCCCCEEEEE
Q 001224 1007 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALG 1072 (1120)
Q Consensus 1007 l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~---~~~v~~~~i~~~p~d~~~l~s~ 1072 (1120)
+.+. +|+..+....+..|.+.|..+|+.+..+......+.... ...-.+-.||++|....+++||
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6665 777665555678999999999999999886544332210 0111234899999644455555
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.37 E-value=0.00012 Score=79.90 Aligned_cols=253 Identities=10% Similarity=0.067 Sum_probs=142.4
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcc---ccc---ccccCCCCceEEEEEcC-C
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP---LQA---ALVKDPGVSVNRVIWSP-D 437 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~l~~h~~~V~~l~~sp-d 437 (1120)
....+++|+++|+ ++.++..++.|..||..+++... |........ ... .........+..+++.+ +
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 4567889999998 47778889999999988654321 100000000 000 00000113578999998 5
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeeee-ecc-cccCeEEEEEcC-CCCceEEEEecC-----------------CCcE
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLE-IDA-HVGGVNDIAFSH-PNKQLCVITCGD-----------------DKTI 497 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~~~~~~-l~~-h~~~V~~v~~s~-d~~~~~l~s~s~-----------------d~~i 497 (1120)
|+ |..+...+.|..+|..++. ++.... ..+ .......+++.+ +|. +.++... ++.|
T Consensus 92 g~-l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 92 NQ-LYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp TE-EEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred Cc-EEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceE
Confidence 54 5555555558888877653 221111 111 123578899999 887 4454322 3678
Q ss_pred EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEE-ecCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeE
Q 001224 498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT 574 (1120)
Q Consensus 498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~ 574 (1120)
..||..+++....... ......++++ +++..|+.+ ...+.|..|++..... ...+...
T Consensus 168 ~~~d~~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---------------- 228 (322)
T 2fp8_A 168 IKYDPSTKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---------------- 228 (322)
T ss_dssp EEEETTTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC----------------
T ss_pred EEEeCCCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC----------------
Confidence 8999877765433221 1233456764 455555444 5668999998875221 0010000
Q ss_pred EecccccceeEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeEEEecCCC--CCCcCeEEEcCCCCEEEEE
Q 001224 575 YQGFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVS 642 (1120)
Q Consensus 575 ~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~ 642 (1120)
.+ ...++++++|+..++... .+.|..+|. .++.+..+....+ ...+.++++ .+++++++.
T Consensus 229 -----~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~ 300 (322)
T 2fp8_A 229 -----PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT 300 (322)
T ss_dssp -----SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred -----CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEee
Confidence 01 233566666665555443 467888887 4676766654322 234666666 466666665
Q ss_pred ECCCcEEEEEccC
Q 001224 643 TNDNGIKILATSD 655 (1120)
Q Consensus 643 ~~dg~i~iwd~~~ 655 (1120)
..++.|..+++..
T Consensus 301 ~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 301 LFHGSVGILVYDK 313 (322)
T ss_dssp SSCSEEEEEEC--
T ss_pred cCCCceEEEeccc
Confidence 6778899998753
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.36 E-value=3.5e-05 Score=77.71 Aligned_cols=187 Identities=9% Similarity=0.086 Sum_probs=124.3
Q ss_pred CCccEEEEccCCCEEEEEe-C--CcEEEEEcCCCceeeeecCCCCC-eEEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001224 825 EAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 900 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 900 (1120)
.-...+.|++ +.+..+.+ + ..|+.+|+.+++.++........ -..+++. ++++.+..-.++.+.+||..+.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 4456889986 44444444 3 47999999999998887643321 2334444 566666667889999999999999
Q ss_pred eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCC
Q 001224 901 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 979 (1120)
Q Consensus 901 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~ 979 (1120)
+.++..... =++++ +|+..|+.+..++.|.++|..+.+......... .+.. ...+..+.+. +|+..+.. .+.
T Consensus 98 ~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~--~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 98 RARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRP--LDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTTT
T ss_pred EEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcc--cccceeeEEe-CCEEEEEECCCC
Confidence 998875432 23444 577777766678889999999866543322221 1100 0123445554 66655554 678
Q ss_pred eEEEEEcCCceeeeccccCC-----------CCCCeeEEEECCCCcEEEEEEc
Q 001224 980 QLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus 980 ~v~i~d~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
.|.+.|..+++.+..+...+ -..-...|+++|+++.|++.+.
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999999987766431 1235688999998887776664
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.33 E-value=4.7e-05 Score=93.47 Aligned_cols=159 Identities=12% Similarity=0.090 Sum_probs=95.1
Q ss_pred CceEEEEe-cCCCeEEEEEeCCC----cEEEEecCCC-ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224 366 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 439 (1120)
Q Consensus 366 ~v~~v~~s-pdg~~lla~g~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 439 (1120)
.+...+|| |||++++.+.+.+| +|+++|+.++ +.+.. . +. .....++|||||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 67889999 99997665555444 4999999988 63210 0 11 1235689999999
Q ss_pred eEEEEECC-----CeEEEEEccCCceeeeeeeec-ccccCeEEEEEcCCCCceEEEEec-CCCcEEEEECCCCc-ee--E
Q 001224 440 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y 509 (1120)
Q Consensus 440 ~las~~~d-----g~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~s-~d~~i~vwd~~~~~-~~--~ 509 (1120)
.|+....| ..|.++++.++..... ..+. .+......+.|||||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99887765 3588888877642211 1122 223456788999999963333322 23468889988762 22 3
Q ss_pred Ee-eccccCeEEEeeccCCCceEEEEEecC--C--eEEEEecCC
Q 001224 510 IF-EGHEAPVYSVCPHHKENIQFIFSTALD--G--KIKAWLYDN 548 (1120)
Q Consensus 510 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~ 548 (1120)
.+ ....+...++.|+. ++.+++....+ + .|..+++.+
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 33 33445555555422 22344444443 2 555566553
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.33 E-value=0.00011 Score=79.35 Aligned_cols=231 Identities=9% Similarity=0.027 Sum_probs=135.4
Q ss_pred CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEeecceee
Q 001224 825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 901 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~ 901 (1120)
.....++++++++.+++.. ++.|..||... .....+. ....+..+++++ +++++++..... .|..++..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4567899999998666664 78999999875 3333332 235688999999 777666544332 4666776676643
Q ss_pred Eeec-ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccC--CCCCCCCCCcEEEEccCCcEEEEE--
Q 001224 902 SKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT--GRTPTAQSDTRVQFHQDQIHFLVV-- 976 (1120)
Q Consensus 902 ~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~fspdg~~la~~-- 976 (1120)
.... ........++..+++..+++-..++.|.++|..+++........... ...........+ ++|++.|.++
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 2221 11222345565566655565556788888887653211000000000 000000122344 8898877764
Q ss_pred eCCeEEEEEcCC-cee--eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceee--eeCCCcccCCCCCC
Q 001224 977 HETQLAIFETTK-LEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINPSAYLPAGVSS 1051 (1120)
Q Consensus 977 ~d~~v~i~d~~~-~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~--~~~~~~~~~~g~~~ 1051 (1120)
..+.|..|++.. +.. ...+.. ......++++++|+++++....+.|.++|.. ++... .+. .+
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~----~~----- 253 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE----QG----- 253 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG----GT-----
T ss_pred CCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc----cc-----
Confidence 567899999875 321 111110 1346778999999887776667899999975 65532 222 11
Q ss_pred CCccceEEEec---CCCCCEEEEEeCC
Q 001224 1052 SNVHPLVIAAH---PQEPNEFALGLSD 1075 (1120)
Q Consensus 1052 ~~v~~~~i~~~---p~d~~~l~s~~~D 1075 (1120)
...+.+++|. | |++.|++++..
T Consensus 254 -~~~p~~~a~~g~~~-d~~~LyVt~~~ 278 (306)
T 2p4o_A 254 -VIGSTAVAFGQTEG-DCTAIYVVTNG 278 (306)
T ss_dssp -CTTEEEEEECCSTT-TTTEEEEEECT
T ss_pred -cCCceEEEEecccC-CCCEEEEECCC
Confidence 1235689998 6 56666665544
No 273
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.32 E-value=0.019 Score=70.68 Aligned_cols=498 Identities=9% Similarity=0.055 Sum_probs=250.6
Q ss_pred CCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeee-cccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224 426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 504 (1120)
Q Consensus 426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l-~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~ 504 (1120)
...|.+|.-..+|. |-.|+.+| +..||-.. ....... ......|.++.-..+|. |-.|+.+| +..+|..+
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCC
Confidence 45799999888875 44566777 55666332 1111010 11234688888777765 44455554 78999877
Q ss_pred CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224 505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 584 (1120)
Q Consensus 505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~ 584 (1120)
.+...........|.++.. .++ .|..++.+ -|..+|..+... ..+... + .+.....+.
T Consensus 92 ~~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~-~~~~~~----------~------~~l~~~~i~ 149 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKL-TSFDTR----------R------NGLPNNTIY 149 (758)
T ss_dssp TEECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCE-EEECHH----------H------HCCSCSCEE
T ss_pred CEEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeE-EEeccC----------C------CCcCCCeEE
Confidence 6443211112234666542 233 34445554 577777654321 111000 0 000111344
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC----CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224 585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 660 (1120)
Q Consensus 585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 660 (1120)
.+..+.++. |..++.+ -|..++..+++... +.... ....|.++....++..|.+|+. +.+..++..++ ..
T Consensus 150 ~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~-~~- 223 (758)
T 3ott_A 150 SIIRTKDNQ-IYVGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG-QI- 223 (758)
T ss_dssp EEEECTTCC-EEEEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT-EE-
T ss_pred EEEEcCCCC-EEEEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC-eE-
Confidence 444444444 4445544 57788887665332 22111 1123667777777765555664 45666775443 10
Q ss_pred hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224 661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 740 (1120)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 740 (1120)
..+.
T Consensus 224 ~~~~---------------------------------------------------------------------------- 227 (758)
T 3ott_A 224 KQTE---------------------------------------------------------------------------- 227 (758)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred Eecc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224 741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820 (1120)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 820 (1120)
.+ ....|.++....+|...+ ++.+| +.+++.....+ ..+....... .
T Consensus 228 -------~l------~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~~~~~~------------~~~~~~~~~~------~ 274 (758)
T 3ott_A 228 -------AF------HNNSIKSLALDGNGDLLA-GTDNG-LYVYHNDTTPL------------QHIIHDSRNI------Q 274 (758)
T ss_dssp -------EE------EEEEEEEEEECTTCCEEE-EETTE-EEEECCTTSCC------------EEECCCTTCT------T
T ss_pred -------CC------CCCeEEEEEEcCCCCEEE-EeCCc-eeEEecCCCcE------------EEEEcCCCCc------C
Confidence 00 123577777777887544 44444 55555422111 0010000000 0
Q ss_pred CCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeee-----cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001224 821 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 895 (1120)
Q Consensus 821 ~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 895 (1120)
.-....|.++....+|..-+....| +.++.....-..... ......|.++.-.. ++.+.+ |+.+| +..++.
T Consensus 275 ~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lWi-Gt~~G-l~~~~~ 350 (758)
T 3ott_A 275 SLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS-KGFYWF-GGANG-LIRFTD 350 (758)
T ss_dssp SCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT-TCCEEE-EETTE-EEEESC
T ss_pred cCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC-CCCEEE-eeCCc-ceeecc
Confidence 0134568889888888755544345 555433211111110 11234588888776 565444 55555 555554
Q ss_pred ecce--eeEeec-------ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001224 896 RVDE--VKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 966 (1120)
Q Consensus 896 ~~~~--~~~~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 966 (1120)
.+++ ....+. -....|.++.-..+|.+.+ |+. +-|..|+..+++....... ...+ ......|.++..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~-~~~~-~~~~~~v~~i~~ 426 (758)
T 3ott_A 351 PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIV-DNTG-TYNTNWTYYIFE 426 (758)
T ss_dssp TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEE-CCC---CBSSSEEEEEE
T ss_pred cccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecC-CCcC-CCCCceEEEEEE
Confidence 4321 111111 1124588888888877655 343 4588999877543211110 0000 001135778888
Q ss_pred ccCCcEEEEEeCCeEEEEEcCCc------eee--ecc--ccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224 967 HQDQIHFLVVHETQLAIFETTKL------ECV--KQW--VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus 967 spdg~~la~~~d~~v~i~d~~~~------~~~--~~~--~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
..+|.+.+.+..+.+.++|..+. ... ..+ ...-....|.++...++|.+.+.++..+-|..+|..+++..
T Consensus 427 d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 427 DTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp CTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred cCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 88888777666678889986531 111 011 11111346999999999997764444556888998887655
Q ss_pred eeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1037 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1037 ~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
.... ..... . ..+.++.... +|.+. .|+.. -|..++..++.
T Consensus 507 ~~~~--~~~~~---~--~~~~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~ 547 (758)
T 3ott_A 507 KLFA--DELTG---E--KSPNYLLCDE-DGLLW-VGFHG-GVMRINPKDES 547 (758)
T ss_dssp EECT--TTSCG---G--GCEEEEEECT-TSCEE-EEETT-EEEEECC--CC
T ss_pred EecC--CCcCC---C--cccceEEECC-CCCEE-EEecC-ceEEEecCCCc
Confidence 3211 11110 1 1223555554 45554 44544 58888877655
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.29 E-value=0.00028 Score=72.34 Aligned_cols=219 Identities=11% Similarity=0.113 Sum_probs=134.8
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc-cccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224 860 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSD 938 (1120)
Q Consensus 860 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~ 938 (1120)
.+.+-...+..++++|+++.++++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3455556799999999666777778889999999987 877777632 12457788999998877776677889999887
Q ss_pred Cccccc-ceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC---ceeeec-----cccCCCCCCeeEEE
Q 001224 939 GWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQ-----WVPRESSAPITHAT 1008 (1120)
Q Consensus 939 ~~~~~~-~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~---~~~~~~-----~~~~~h~~~v~~l~ 1008 (1120)
...... .......-+..........++++|++..|.++ ......+|.+.. ...+.. +....+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 644211 11121111112223567899999998777664 333445555431 111111 11112345689999
Q ss_pred ECCCCc-EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224 1009 FSCDSQ-LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus 1009 ~s~dg~-~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
+.|... +++.......+.++|.. |+.+..+....... +-......+-.|+|.+ +|+ |..+++-+-++++.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCC-EEEEcCCceEEEEEe
Confidence 999654 55555566789999966 55666665222111 0001113456899999 576 555577776665543
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.28 E-value=0.0016 Score=70.76 Aligned_cols=235 Identities=9% Similarity=0.017 Sum_probs=131.8
Q ss_pred CCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeec---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001224 824 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 900 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 900 (1120)
...+.++.+++ +..++++..+.|.. ..+.++.-.... .+...+..+.+.+ ++.+++++ .+|.|+.- ...|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCC
Confidence 44678888876 55555565675543 223333222221 2334578888877 67777655 45654321 122322
Q ss_pred eE-eecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001224 901 KS-KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 979 (1120)
Q Consensus 901 ~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~ 979 (1120)
-. ...++...+.++++.+++.+++.+...+..+-+|-. ++ ....+... . ...+..+++.+++..++++.++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~--tW~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT--AWEPHNRT--T---SRRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CS--SCEEEECC--S---SSCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC--ceeECCCC--C---CCccceeEECCCCCEEEEeCCc
Confidence 11 123455678999999998888766544333333321 11 11122211 1 1367889999999988888888
Q ss_pred eEEEEEcCCceeeeccccC--CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccce
Q 001224 980 QLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1057 (1120)
Q Consensus 980 ~v~i~d~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 1057 (1120)
.+.+.+.+.++........ .+...+.++++.+++.+++++ .+|.| .+..+.|+.=..+......+ ..++
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~-----~~~~-- 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVP-----SNFY-- 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSS-----SCCC--
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCC-----CCeE--
Confidence 8877653434433332211 123468999999988877765 47777 34555564443332110011 1244
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEe
Q 001224 1058 VIAAHPQEPNEFALGLSDGGVHVFE 1082 (1120)
Q Consensus 1058 ~i~~~p~d~~~l~s~~~Dg~v~vW~ 1082 (1120)
.+.|.+ +..+++++.+|.|.-++
T Consensus 297 ~v~~~~--~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 297 KILFFS--PDQGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred EEEEEC--CCceEEEcCCceEEEEc
Confidence 677764 35677777899776655
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.27 E-value=4.9e-05 Score=93.29 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=109.3
Q ss_pred CccEEEEc-cCCCEEEEEe--CC----cEEEEEcCCC-ceeee-ecCCCCCeEEEEEecCCCcEEEEEeCC-----CcEE
Q 001224 826 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ 891 (1120)
Q Consensus 826 ~v~~l~~s-~d~~~l~~~s--dg----~i~vwd~~~~-~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~ 891 (1120)
.+...+|| |||++||.+. +| +|+++|+.++ +.+.. +. .....++|+| |++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 57789999 9999999765 23 4999999988 63211 11 1134688999 77777666654 2577
Q ss_pred EEEeeccee--eEeec-ccccceEEEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEE
Q 001224 892 IYNVRVDEV--KSKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 965 (1120)
Q Consensus 892 vwd~~~~~~--~~~l~-~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 965 (1120)
++++.++.. ...+. .+......+.|||||++|+..+. ...|.++|+.++.... .......+.. .....+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~ 326 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ 326 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence 788766532 12222 22334668899999999886553 3457888888752111 0011111111 1233444
Q ss_pred EccCCcEEEE-EeC-----CeEEEEEcCCceeeec-cccCCCCCCeeEEEECCCCcEEEEEEcCCc--EEEEEc
Q 001224 966 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSAPITHATFSCDSQLVYACFLDAT--VCVFSA 1030 (1120)
Q Consensus 966 fspdg~~la~-~~d-----~~v~i~d~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~--v~iwd~ 1030 (1120)
|+. |..|+. +.. ..|..+++.+...... +........+..+.+. .+.++++...||. |+++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 443 554444 432 2677777765322222 2211112245556654 3345566777776 455564
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.26 E-value=0.00061 Score=69.87 Aligned_cols=164 Identities=10% Similarity=0.079 Sum_probs=107.8
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
-.+.+..++|+|++..|+++...++.|...|.. ++.+.+.+ +.+ ....-.|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 346799999999988888888889999999998 77665422 222 24678889999998777
Q ss_pred EEECCCeEEEEEccCCceee--eeeee----cccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC---CCceeEEee-
Q 001224 443 VAYSRHIVQIYSYHGGDEVR--QHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFE- 512 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~--~~~~l----~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~---~~~~~~~~~- 512 (1120)
+.-.++.+.++++.....+. ....+ .........++|+|+++++++ +.......+|.+. ....+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v--a~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF--FKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE--EEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE--EECcCCceEEEEcccccCCceeeecc
Confidence 76667889999887654322 11111 123456799999999986333 3333333444433 111222221
Q ss_pred ------ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224 513 ------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 548 (1120)
Q Consensus 513 ------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 548 (1120)
.+...+.++++++. .+++++.....+.+..+|...
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTC
T ss_pred hhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCC
Confidence 12345678888875 457777777788888888664
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.20 E-value=0.0011 Score=72.72 Aligned_cols=239 Identities=12% Similarity=0.054 Sum_probs=148.6
Q ss_pred CCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee
Q 001224 825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 904 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 904 (1120)
...+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++........+
T Consensus 34 d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 34 DRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp TSSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 3445666666 346666666678888887655444343 34458999999855666666567788999988765433333
Q ss_pred cccccceEEEEEccCCCEE-EEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eC-Ce
Q 001224 905 KGHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQ 980 (1120)
Q Consensus 905 ~~h~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d-~~ 980 (1120)
........++++.+.+..| ++-...+.|.+.+++.... ..+..... .....++++|.+..|..+ .. +.
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l~~~~l-----~~P~~iavdp~~g~ly~td~~~~~~ 183 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLLWQSL-----EKPRAIALHPMEGTIYWTDWGNTPR 183 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECTTC-----SCEEEEEEETTTTEEEEEECSSSCE
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---EEEEeCCC-----CCcceEEEecCcCeEEEeccCCCCE
Confidence 3333456789998755544 5555667899999876331 11111111 245889999976666554 34 67
Q ss_pred EEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEE
Q 001224 981 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1059 (1120)
Q Consensus 981 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i 1059 (1120)
|..+++...... .+.. ..-.....|+|+|++..|+.+. ..+.|..+|++.......+... .-.|..+
T Consensus 184 I~r~~~dG~~~~-~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~gi 251 (349)
T 3v64_C 184 IEASSMDGSGRR-IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAI 251 (349)
T ss_dssp EEEEETTSCSCE-ESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEE
T ss_pred EEEEeCCCCCcE-EEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEE
Confidence 888887654332 2221 2245678999999777776665 4578999998754333222211 1234567
Q ss_pred EecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1060 AAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1060 ~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
++. ++.++++-...+.|...+..+|+
T Consensus 252 av~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 252 TVF--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEE--CCEEEEecCCCCeEEEEEccCCC
Confidence 774 35667777777888888866665
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.15 E-value=0.00088 Score=72.47 Aligned_cols=207 Identities=7% Similarity=-0.041 Sum_probs=128.9
Q ss_pred CCCccEEEEccCCCEEEEEe--CCcEEEEEcCC----CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224 824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 897 (1120)
...+..++|++++..|.... ++.|..+++.. ......+.........+++++.+++++++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578899998877777665 58899999875 2222223323345688999874566666666778999999764
Q ss_pred ceeeEeecccccceEEEEEccCCCEEEEEeCC--CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224 898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 975 (1120)
Q Consensus 898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~ 975 (1120)
......+........++++.|++..|..+... +.|...+++.... ..+..... .....+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~~~~~~~-----~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENI-----QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEECSSC-----SCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EEEEECCC-----CCceEEEEeccCCEEEE
Confidence 43322233334567899999877666555443 5787777765321 11111111 24579999998777766
Q ss_pred E--eCCeEEEEEcCCceeeecccc-CCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 976 V--HETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 976 ~--~d~~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+ ..+.|..+|+..... ..+.. .........|++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 4 557899999874332 22221 1223456788884 35555555567889999988887665554
No 280
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=0.00047 Score=78.04 Aligned_cols=248 Identities=9% Similarity=0.037 Sum_probs=142.7
Q ss_pred CCccEEEEcc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC-CC----cEEEEEeec
Q 001224 825 EAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRV 897 (1120)
Q Consensus 825 ~~v~~l~~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg----~v~vwd~~~ 897 (1120)
.....++++| ++..|.++. .+.|+.+|+.++.... +.........++|++ ++++|.++.. ++ .+.+++ ..
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RE 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CC
Confidence 3567899998 455666665 5789999998765443 333455689999999 7775555443 22 233333 33
Q ss_pred ceee--EeecccccceEEEEEcc-CCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224 898 DEVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 974 (1120)
Q Consensus 898 ~~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la 974 (1120)
+... ..+.. .....+++++| +|.++++-..++.|..++.+++... ........ .....++|+|+|++|.
T Consensus 214 g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 214 SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAY 285 (430)
T ss_dssp GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEE
T ss_pred Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEE
Confidence 3222 22221 23456789999 6776776667788999998864321 11221111 2357899999999666
Q ss_pred EE--eCCeEEEEEcCC--cee--eecccc----CCC---------CCCee-EEEEC--------CCCcEEEEEEcCCcEE
Q 001224 975 VV--HETQLAIFETTK--LEC--VKQWVP----RES---------SAPIT-HATFS--------CDSQLVYACFLDATVC 1026 (1120)
Q Consensus 975 ~~--~d~~v~i~d~~~--~~~--~~~~~~----~~h---------~~~v~-~l~~s--------~dg~~l~s~~~Dg~v~ 1026 (1120)
++ ..+.|..++... +.. +..+.. .+. -.... .++.. ++|.+.++=...+.|+
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 64 567899887653 221 111110 000 11233 45553 3455555555567898
Q ss_pred EEEcCCcceeeeeCCCc--ccC--CC---CCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224 1027 VFSAANLKLRCRINPSA--YLP--AG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1027 iwd~~~~~~~~~~~~~~--~~~--~g---~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
.++ .+|+.....-... ... .| ....--.|..++++|+++.++++-...+.|+.++++
T Consensus 366 ~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 888 4565443332100 000 01 001112577999998556666666666788887764
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.14 E-value=0.0005 Score=77.77 Aligned_cols=250 Identities=8% Similarity=0.018 Sum_probs=145.0
Q ss_pred CCccEEEEccC--CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC---C-cEEEEEeec
Q 001224 825 EAVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRV 897 (1120)
Q Consensus 825 ~~v~~l~~s~d--~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~v~vwd~~~ 897 (1120)
.....++++|+ +..|.++. .+.|+.+|..++.... +.........+++++ +++++++.... . .+..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCC
Confidence 34678999984 44555555 5889999998766544 333455689999999 77755543321 1 133333222
Q ss_pred cee-eEeecccccceEEEEEcc-CCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224 898 DEV-KSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 975 (1120)
Q Consensus 898 ~~~-~~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~ 975 (1120)
+.. ...+. .......+++.+ +|.+.++-..++.|+.++..++.... ....... . .....++|+|+|++|.+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~--~---~~~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDT--K---GSNFHIVWHPTGDWAYI 289 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSC--C---SSCEEEEECTTSSEEEE
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCC--C---CCcccEEEeCCCCEEEE
Confidence 111 01111 233456789999 67666666667889999887654311 1111111 1 12347999999996666
Q ss_pred E--eCCeEEEEEcC--Cceee--ecccc----CC---------CCCCeeEEEE---------CCCCcEEEEEEcCCcEEE
Q 001224 976 V--HETQLAIFETT--KLECV--KQWVP----RE---------SSAPITHATF---------SCDSQLVYACFLDATVCV 1027 (1120)
Q Consensus 976 ~--~d~~v~i~d~~--~~~~~--~~~~~----~~---------h~~~v~~l~~---------s~dg~~l~s~~~Dg~v~i 1027 (1120)
+ ..+.|..++.. ++... ..+.. .+ .-.....+++ .++|.++++-...+.|+.
T Consensus 290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~ 369 (433)
T 4hw6_A 290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV 369 (433)
T ss_dssp EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence 4 56789998765 23211 11110 01 1234677999 777777776666788999
Q ss_pred EEcCCcceeeeeCCCc----ccCCC-C--CCCCccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224 1028 FSAANLKLRCRINPSA----YLPAG-V--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1028 wd~~~~~~~~~~~~~~----~~~~g-~--~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
++. +|......-... -...| . ...--.|..++++|.++.++++-...+.|+.++++
T Consensus 370 ~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 370 LTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 984 565443322110 00011 0 01113477899996567777777777888888764
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.12 E-value=0.00017 Score=87.11 Aligned_cols=259 Identities=12% Similarity=0.048 Sum_probs=137.2
Q ss_pred eeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCC-CeEEEEEecCCCcE
Q 001224 804 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNI 880 (1120)
Q Consensus 804 ~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~ 880 (1120)
.+||+.+++..........+.....++++..+++.++.|+ +..+.+||..+.+-...-..+.. .-.+++..+ ++++
T Consensus 222 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~i 300 (656)
T 1k3i_A 222 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRV 300 (656)
T ss_dssp EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCE
T ss_pred EEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeE
Confidence 4556555553322111111233345678889999999987 46799999876543222111111 123455666 7889
Q ss_pred EEEEe-CC-----CcEEEEEeecceeeEee----cccccceEEEEEccCCCEEEEEeCCC---------CEEEEECCCcc
Q 001224 881 IAIGM-DD-----SSIQIYNVRVDEVKSKL----KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWE 941 (1120)
Q Consensus 881 lasg~-~d-----g~v~vwd~~~~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg---------~v~iWd~~~~~ 941 (1120)
++.|+ .+ ..+.+||..+++-...- ......-....+..++..++.++.|| .+..||..+..
T Consensus 301 yv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~ 380 (656)
T 1k3i_A 301 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 380 (656)
T ss_dssp EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred EEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence 99988 44 47999998775422210 00000000112234555556665554 46778877643
Q ss_pred cccceeeeccCCC---CCCCCCCcEEEEcc-CCcEEEEE-eCC-----------eEEEEEcCCceeeeccccCCC-CCCe
Q 001224 942 KQKNRFLQIPTGR---TPTAQSDTRVQFHQ-DQIHFLVV-HET-----------QLAIFETTKLECVKQWVPRES-SAPI 1004 (1120)
Q Consensus 942 ~~~~~~~~~~~~~---~~~~~~i~~~~fsp-dg~~la~~-~d~-----------~v~i~d~~~~~~~~~~~~~~h-~~~v 1004 (1120)
.. ......... ......-.++.|.. +++++++| .++ .+.+||..+............ ...-
T Consensus 381 w~--~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~ 458 (656)
T 1k3i_A 381 DV--KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF 458 (656)
T ss_dssp EE--EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS
T ss_pred ee--ecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc
Confidence 21 111111100 00001224455543 67777774 321 688888887665433200111 2233
Q ss_pred eEEEECCCCcEEEEEEcC-----------CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224 1005 THATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus 1005 ~~l~~s~dg~~l~s~~~D-----------g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
.+++..|||++++.|+.+ ..+.+||..+.+-... .. .+... ...-.+...| |+++++.|+
T Consensus 459 ~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~-~~---~~~~R----~~hs~a~ll~-dg~v~v~GG 529 (656)
T 1k3i_A 459 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ-NP---NSIVR----VYHSISLLLP-DGRVFNGGG 529 (656)
T ss_dssp CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC-CC---CSSCC----CTTEEEEECT-TSCEEEEEC
T ss_pred CCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec-CC---CCCcc----ccccHhhcCC-CcEEEecCC
Confidence 456778899999999865 4689999988765432 11 11110 1111234456 689999998
Q ss_pred C
Q 001224 1074 S 1074 (1120)
Q Consensus 1074 ~ 1074 (1120)
.
T Consensus 530 ~ 530 (656)
T 1k3i_A 530 G 530 (656)
T ss_dssp C
T ss_pred C
Confidence 5
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.08 E-value=0.0013 Score=73.20 Aligned_cols=217 Identities=10% Similarity=-0.031 Sum_probs=129.9
Q ss_pred eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224 357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 436 (1120)
Q Consensus 357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 436 (1120)
....+.....+..++|++.+..|+.+-...+.|..+++..+.... ++.........+++.+
T Consensus 108 ~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~ 168 (386)
T 3v65_B 108 YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDW 168 (386)
T ss_dssp CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSSCSCCCCEEEET
T ss_pred EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCCCCCccEEEEEe
Confidence 334444556789999999877777777778899999988664322 1111223456789998
Q ss_pred CCCeEE-EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC-CcEEEEECCCCceeEEeecc
Q 001224 437 DGSLFG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGH 514 (1120)
Q Consensus 437 dg~~la-s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~h 514 (1120)
.+..|. +-...+.|.+.++++..... .+.........+++.|.+.. ++++-... +.|...++............
T Consensus 169 ~~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 244 (386)
T 3v65_B 169 VHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTH 244 (386)
T ss_dssp TTTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred CCCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECC
Confidence 655554 44556788888887654221 22333456789999998775 34444444 78888887644333333333
Q ss_pred ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224 515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 594 (1120)
Q Consensus 515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~ 594 (1120)
......+++++.. +.+.++-+..+.|..+|++.......+.........++ + ..+..
T Consensus 245 ~~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gia---------------------v-~~~~l 301 (386)
T 3v65_B 245 LFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT---------------------V-FEDSL 301 (386)
T ss_dssp CSCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEE---------------------E-ETTEE
T ss_pred CCCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEE---------------------E-ECCEE
Confidence 3456778886543 24455555667888888765332222222222223333 3 12234
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEe
Q 001224 595 FLAAGDDFSIKFWDMDSVQLLTSID 619 (1120)
Q Consensus 595 l~~~~~dg~i~iwd~~~~~~~~~~~ 619 (1120)
+++-...+.|..++..+|+.+..+.
T Consensus 302 y~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 302 YWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEeeCCCCeEEEEECCCCcceEEEc
Confidence 4555567788888876776666654
No 284
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.08 E-value=0.00062 Score=75.96 Aligned_cols=206 Identities=10% Similarity=-0.020 Sum_probs=131.9
Q ss_pred CCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224 824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 901 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 901 (1120)
...+..++|++.+..|.... .+.|..+++........+.........+++++.+++++++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 34578899998777777665 6889999988665444343333456788999845666666666778888887644333
Q ss_pred EeecccccceEEEEEccCCCEEEEEeC-C-CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001224 902 SKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 977 (1120)
Q Consensus 902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~ 977 (1120)
..+........+|++.|++..|..+.. . +.|...+++.... ..... ... .....++++|++..|..+ .
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~-~~~-----~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--RIIAD-THL-----FWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEEC-SSC-----SCEEEEEEEGGGTEEEEEETT
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc--EEEEE-CCC-----CCeeeEEEeCCCCEEEEEECC
Confidence 333334456789999987766655543 3 5677777765321 11111 111 234789999877766664 5
Q ss_pred CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 978 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 978 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
.+.|..+|+...... .+.. ........|++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 267 ~~~I~~~d~dG~~~~-~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 267 HHVIERANLDGSHRK-AVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEECTTSCSCE-EEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCeeE-EEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 678999998754332 2221 22456788888 345555555567889999977887776665
No 285
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.08 E-value=0.0023 Score=70.16 Aligned_cols=216 Identities=10% Similarity=-0.035 Sum_probs=128.9
Q ss_pred eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224 357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 436 (1120)
Q Consensus 357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 436 (1120)
....+.....+..++|++.+..|+.+-...+.|..+++..+.... +..........+++.+
T Consensus 65 ~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~ 125 (349)
T 3v64_C 65 YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDW 125 (349)
T ss_dssp EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEET
T ss_pred eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-------------------EEeCCCCCccEEEEec
Confidence 334444556789999999877777777778899999988654322 1111223457899998
Q ss_pred CCCeE-EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC-CcEEEEECCCCceeEEe-ec
Q 001224 437 DGSLF-GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIF-EG 513 (1120)
Q Consensus 437 dg~~l-as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~-~~ 513 (1120)
.+..| ++-...+.|.+.+.++..... .+...-.....+++.|.+.. ++++-... +.|...++.. .....+ ..
T Consensus 126 ~~g~ly~~d~~~~~I~~~~~dG~~~~~---l~~~~l~~P~~iavdp~~g~-ly~td~~~~~~I~r~~~dG-~~~~~~~~~ 200 (349)
T 3v64_C 126 VHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDG-SGRRIIADT 200 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEE---EECTTCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTS-CSCEESCCS
T ss_pred CCCeEEEEcCCCCeEEEEcCCCCceEE---EEeCCCCCcceEEEecCcCe-EEEeccCCCCEEEEEeCCC-CCcEEEEEC
Confidence 65555 444556789999988654221 22233456789999997775 44444444 7888888654 333333 22
Q ss_pred cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224 514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 593 (1120)
Q Consensus 514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~ 593 (1120)
.......+++++.. +.+.++-...+.|..+|++.......+.........+++ ..+.
T Consensus 201 ~~~~PnGla~d~~~-~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav----------------------~~~~ 257 (349)
T 3v64_C 201 HLFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV----------------------FEDS 257 (349)
T ss_dssp SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE----------------------ETTE
T ss_pred CCCCcceEEEeCCC-CEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE----------------------ECCE
Confidence 33456778886543 344555555678988888653322222222222233333 1223
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEe
Q 001224 594 RFLAAGDDFSIKFWDMDSVQLLTSID 619 (1120)
Q Consensus 594 ~l~~~~~dg~i~iwd~~~~~~~~~~~ 619 (1120)
.+++-...+.|..++..+|+....+.
T Consensus 258 ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEecCCCCeEEEEEccCCCccEEec
Confidence 34444566777777766666555554
No 286
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.05 E-value=0.0046 Score=66.73 Aligned_cols=224 Identities=11% Similarity=0.034 Sum_probs=125.8
Q ss_pred CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE-ECCCeEEEEEccCC---ceee
Q 001224 387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGG---DEVR 462 (1120)
Q Consensus 387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~dg~v~iwd~~~~---~~~~ 462 (1120)
..|+..|+.+++.... + ........++|+++++.|..+ ..++.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6788889887654321 1 123467899999976666555 45688999998862 2121
Q ss_pred eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecC-CeE
Q 001224 463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKI 541 (1120)
Q Consensus 463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i 541 (1120)
. .+...-.....+++.+.+.. ++++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222345688999876665 4566667889999997654433333333345677887543 33344443333 677
Q ss_pred EEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEEec
Q 001224 542 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDA 620 (1120)
Q Consensus 542 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 620 (1120)
...+++................. +++++++..|+.+ +..+.|..+|++..........
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~g---------------------la~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~ 204 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNG---------------------ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED 204 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEE---------------------EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred EEEcCCCCCeEEEEECCCCCceE---------------------EEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec
Confidence 77776532211111112223334 4455444445544 4567899999874333222222
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 621 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 621 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
.........+++. .+.++++-...+.|..++..++
T Consensus 205 ~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 205 EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 2222335677775 3555555556778888887666
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.04 E-value=0.0027 Score=71.03 Aligned_cols=208 Identities=6% Similarity=-0.042 Sum_probs=132.6
Q ss_pred CCCccEEEEccCCCEEEEEe--CCcEEEEEcCCC----ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224 824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 897 (1120)
...+..++|++.+..|.... .+.|+.+++... .....+.........+++.+.+++++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999998777777765 578999998752 222333334456889999984566666666678899998875
Q ss_pred ceeeEeecccccceEEEEEccCCCEEEEEeC--CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224 898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 975 (1120)
Q Consensus 898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~ 975 (1120)
......+........+|++.|.+.+|..... .+.|...+++..... .... .+ ......+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~--~~~~--~~----l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT--EN----IQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE--EEEC--SS----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE--EEEE--CC----CCceEEEEEEeCCCEEEE
Confidence 5433334434455789999997666665542 367888888763221 1111 11 124588999998877777
Q ss_pred E--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 976 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 976 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+ ..+.|..+|+....................|++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 5678999998754433222221223456677773 33445555566889999988887776654
No 288
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.00 E-value=0.012 Score=63.76 Aligned_cols=192 Identities=13% Similarity=0.049 Sum_probs=111.7
Q ss_pred CCccEEEEccCCCEEEEEeCCcEE-EEEcCCCceee-eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE-Ee--ecce
Q 001224 825 EAVPCFALSKNDSYVMSASGGKIS-LFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY-NV--RVDE 899 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~sdg~i~-vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw-d~--~~~~ 899 (1120)
..+..+.+.++++.++++.++.|. -.| .++.-. ........+..+++.+ ++.+++++. +|.++.- |- .+.+
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWE 197 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCcee
Confidence 346678877778777777666542 222 222221 2233456789999999 788887664 4555443 31 2233
Q ss_pred eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001224 900 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 979 (1120)
Q Consensus 900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~ 979 (1120)
.+. ......+..+++.+++..++ ++.+|.+++++.+.++. ...+... .......+..+++.+++..++++.++
T Consensus 198 ~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t--W~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g 270 (327)
T 2xbg_A 198 PHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN--WGELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAG 270 (327)
T ss_dssp EEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE--ECCCBCT--TSSCCSCEEEEEESSSSCEEEEESTT
T ss_pred ECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe--eEeccCC--cccCCcceEEEEecCCCEEEEEeCCC
Confidence 332 23456788999999887665 45578777765332221 0111111 00111246888999999988888888
Q ss_pred eEEEEEcCCceeeecccc-CCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224 980 QLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus 980 ~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
.+ .+..+.++--..+.. ..+...+.++.|.++++ +++++.+|.|.-++
T Consensus 271 ~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 271 AL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp CE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred eE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 77 444554543322221 12245688899986665 55566789777665
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.96 E-value=0.0017 Score=68.94 Aligned_cols=196 Identities=9% Similarity=0.151 Sum_probs=126.3
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCC----c---EEEEEe-C--CCcEEEEEee--cceee
Q 001224 835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN----N---IIAIGM-D--DSSIQIYNVR--VDEVK 901 (1120)
Q Consensus 835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~----~---~lasg~-~--dg~v~vwd~~--~~~~~ 901 (1120)
...+++... .+.+.+||+ +++.++.+.. +.++.+..-| +- + ++++.. . +++|.+|++. +++ +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 334444433 678999999 7888888863 5678887776 32 1 233333 3 5789999884 333 4
Q ss_pred Eeecc------cc-cceEEEEE--ccC-CC-EEEEEeCCCCEEEEECCC---cccccceeeeccCCCCCCCCCCcEEEEc
Q 001224 902 SKLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDG---WEKQKNRFLQIPTGRTPTAQSDTRVQFH 967 (1120)
Q Consensus 902 ~~l~~------h~-~~V~~l~~--s~d-~~-~l~s~s~Dg~v~iWd~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~fs 967 (1120)
..+.. .. ..+..+|+ ++. ++ +++....+|.+..|++.. +.. ..+.+..+... ..+..++..
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvD 188 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAAD 188 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEc
Confidence 44421 11 56777888 664 44 677888899999999843 212 22233333221 357889999
Q ss_pred cCCcEEEEE-eCCeEEEEEcC-----CceeeeccccCCCCCCeeEEEE--CCCCc-EEEEEE-cCCcEEEEEcC-Cccee
Q 001224 968 QDQIHFLVV-HETQLAIFETT-----KLECVKQWVPRESSAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLR 1036 (1120)
Q Consensus 968 pdg~~la~~-~d~~v~i~d~~-----~~~~~~~~~~~~h~~~v~~l~~--s~dg~-~l~s~~-~Dg~v~iwd~~-~~~~~ 1036 (1120)
+...+|.++ .+..|..|+.+ +++.+..+....-...+..|++ .++++ ||++.+ .+.+..|||.. +.+.+
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 988888887 55567777754 3455544432222347888888 56666 777666 56799999996 78888
Q ss_pred eeeC
Q 001224 1037 CRIN 1040 (1120)
Q Consensus 1037 ~~~~ 1040 (1120)
..+.
T Consensus 269 g~f~ 272 (355)
T 3amr_A 269 ADFR 272 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 290
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.94 E-value=0.00034 Score=84.50 Aligned_cols=242 Identities=12% Similarity=0.030 Sum_probs=137.9
Q ss_pred EEEEcc-CCCEEEEEe-CC-----------cEEEEEcCCCce--eeeecC-CCCCeEEEEEecCCCcEEEEEe-CCCcEE
Q 001224 829 CFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKT--MATFMP-PPPAATFLAFHPQDNNIIAIGM-DDSSIQ 891 (1120)
Q Consensus 829 ~l~~s~-d~~~l~~~s-dg-----------~i~vwd~~~~~~--~~~~~~-~~~~i~~l~~sp~d~~~lasg~-~dg~v~ 891 (1120)
++++.+ +++.++.|+ +. .+.+||..+++. +..+.. +.....++++.+ +++++++|+ .+..++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 567777 888888876 21 488999887653 222322 233344577778 889999988 455899
Q ss_pred EEEeecceee--EeecccccceEEEEEccCCCEEEEEe-CC-----CCEEEEECCCccccccee---eeccCCCCCCCCC
Q 001224 892 IYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRF---LQIPTGRTPTAQS 960 (1120)
Q Consensus 892 vwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s-~D-----g~v~iWd~~~~~~~~~~~---~~~~~~~~~~~~~ 960 (1120)
+||..+++-. ..+..... -.++++.++|++++.|+ .+ ..+.+||..+.+-..... .......
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~------ 341 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD------ 341 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC------
T ss_pred EecCcCCceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc------
Confidence 9998876432 22222111 12455667999999998 44 468999998754211000 0000000
Q ss_pred CcEEEEccCCcEEEE----------EeCCeEEEEEcCCceeeeccccCC-------CCCCeeEEEEC-CCCcEEEEEEcC
Q 001224 961 DTRVQFHQDQIHFLV----------VHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLD 1022 (1120)
Q Consensus 961 i~~~~fspdg~~la~----------~~d~~v~i~d~~~~~~~~~~~~~~-------h~~~v~~l~~s-~dg~~l~s~~~D 1022 (1120)
...++..+++.++. +....+..||..+........... ....-.++.|. .++++++.|+.+
T Consensus 342 -~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~ 420 (656)
T 1k3i_A 342 -KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP 420 (656)
T ss_dssp -TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred -ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCC
Confidence 00112233333333 234567889988765433221110 01123444553 478888888854
Q ss_pred C-----------cEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-----------CcEEE
Q 001224 1023 A-----------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHV 1080 (1120)
Q Consensus 1023 g-----------~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-----------g~v~v 1080 (1120)
+ .|.+||..+..-.... ....+... .. -+++..| |+++++.|+.+ ..+.+
T Consensus 421 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R----~~-~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ 492 (656)
T 1k3i_A 421 DYQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFAR----TF-HTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEI 492 (656)
T ss_dssp SSSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCC----BS-CEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEE
T ss_pred CCCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCc----cc-CCeEECC-CCCEEEECCcccCcCcCCCCcccceEE
Confidence 3 6888888877654332 01122221 11 1445566 58899999865 56899
Q ss_pred EecCCCC
Q 001224 1081 FEPLESE 1087 (1120)
Q Consensus 1081 W~~~~~~ 1087 (1120)
||+.+.+
T Consensus 493 ydp~t~~ 499 (656)
T 1k3i_A 493 YVPEQDT 499 (656)
T ss_dssp EEGGGTE
T ss_pred EcCCCCc
Confidence 9998755
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=0.0034 Score=70.92 Aligned_cols=255 Identities=11% Similarity=0.087 Sum_probs=136.4
Q ss_pred CCceEEEEec-CCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224 365 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 443 (1120)
Q Consensus 365 ~~v~~v~~sp-dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las 443 (1120)
.....|+|+| ++..|+++-. .+.|+.+|+.+++... +.........|+|+++|++|.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 4678999998 4554455444 3889999998765432 1223456889999999996666
Q ss_pred EECC----C-eEEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCceeEEeec-ccc
Q 001224 444 AYSR----H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-HEA 516 (1120)
Q Consensus 444 ~~~d----g-~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-h~~ 516 (1120)
+... . .+.+.+.. +.... ...+. .......++++| +|. ++++-..++.|..++..++........ ...
T Consensus 196 ad~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 6542 2 33334433 32221 11222 123467788999 555 566666778999999887664222221 123
Q ss_pred CeEEEeeccCCCce-EEEEEecCCeEEEEecCCCCC----ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc--
Q 001224 517 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD-- 589 (1120)
Q Consensus 517 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~-- 589 (1120)
.-..++|++ +++ ++++-...+.|..++.+.... ...+......- .+ .+|. .....-..+...+++.
T Consensus 271 ~P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~---g~-~dg~-~~~a~~~~P~~gv~v~~~ 343 (430)
T 3tc9_A 271 WEFHIQFHP--SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAK---DW-VDGV-GKKARMHAPRQGTFVKNP 343 (430)
T ss_dssp CCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCB---CC-BCEE-GGGCBBSSEEEEEEEECG
T ss_pred cceeEEEcC--CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCC---CC-CCCC-CcceEeCCCcceEEEccc
Confidence 456788754 446 445555678898887764211 11111100000 00 0000 0000000111134442
Q ss_pred ------CCCCEEEEEeCCCeEEEEECCCCceeEEEec---------CC------CCCCcCeEEEcCC-CCEEEEEECCCc
Q 001224 590 ------TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA---------DG------GLPASPRIRFNKD-GCLLAVSTNDNG 647 (1120)
Q Consensus 590 ------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~~-~~~l~~~~~dg~ 647 (1120)
+++..+++-...+.|+.++. +|........ .+ .......++++++ +.++++-..++.
T Consensus 344 ~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r 422 (430)
T 3tc9_A 344 AYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRR 422 (430)
T ss_dssp GGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred cccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 34555555556778888883 4543333221 00 0224568999995 555555555677
Q ss_pred EEEEEc
Q 001224 648 IKILAT 653 (1120)
Q Consensus 648 i~iwd~ 653 (1120)
|+.+++
T Consensus 423 Ir~i~~ 428 (430)
T 3tc9_A 423 IRKIGY 428 (430)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 887765
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.86 E-value=0.0031 Score=71.21 Aligned_cols=253 Identities=13% Similarity=0.124 Sum_probs=136.7
Q ss_pred CCceEEEEecC--CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 365 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 365 ~~v~~v~~spd--g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
.....|+|+|+ +..|+++ ...+.|+.+|..+++... +.........++|+++|++++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 35679999995 3334444 333899999998776543 222345689999999999444
Q ss_pred EEECC---Ce-EEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCceeEEe-ec-cc
Q 001224 443 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-EG-HE 515 (1120)
Q Consensus 443 s~~~d---g~-v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~-h~ 515 (1120)
+.... .. +...+...+.... ..+. .-.....+++.| +|. ++++-..++.|+.+|..++.....+ .. ..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 43311 22 3333333322110 0111 223456788999 565 5566667788999998877763333 21 11
Q ss_pred cCeEEEeeccCCCce-EEEEEecCCeEEEEecCCCCCc----eeeeCC-CCceeEEEEcCCCCeEEecccccceeEEEE-
Q 001224 516 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSR----VDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQF- 588 (1120)
Q Consensus 516 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----~~~~~~-~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~- 588 (1120)
..-..+++++ ++. +.++-...+.|+.++.+..... ..+... ... .+ .+|. .....-.....+++
T Consensus 273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~----g~-~dg~--~~~a~~~~P~giav~ 343 (433)
T 4hw6_A 273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP----GW-VDGM--GTGARLWGPNQGIFV 343 (433)
T ss_dssp SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCC----CC-BCEE--GGGSBCSSEEEEEEE
T ss_pred CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCC----cc-CCCc--ccceEEcCCccEEEE
Confidence 2234577754 445 4445555688998887632111 111110 000 00 0000 00000012334666
Q ss_pred --------cCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC----------------CCCcCeEEEc-CCCCEEEEEE
Q 001224 589 --------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVST 643 (1120)
Q Consensus 589 --------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~ 643 (1120)
+++++.+++-...+.|+.++. +|. +..+.+... ......++++ ++|.++++-.
T Consensus 344 ~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 421 (433)
T 4hw6_A 344 KNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC 421 (433)
T ss_dssp ECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred ccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence 566666666667788888885 453 333322211 1235578888 5666665555
Q ss_pred CCCcEEEEEcc
Q 001224 644 NDNGIKILATS 654 (1120)
Q Consensus 644 ~dg~i~iwd~~ 654 (1120)
.++.|+.++++
T Consensus 422 ~n~rIr~i~~e 432 (433)
T 4hw6_A 422 DNHRVRKIAPE 432 (433)
T ss_dssp GGTEEEEEEEC
T ss_pred CCCEEEEEecC
Confidence 66778877653
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.85 E-value=0.0028 Score=68.27 Aligned_cols=228 Identities=11% Similarity=0.021 Sum_probs=139.4
Q ss_pred EEEEEeCCcEEEEEcCCCce-eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee-EeecccccceEEEE
Q 001224 838 YVMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLA 915 (1120)
Q Consensus 838 ~l~~~sdg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~-~~l~~h~~~V~~l~ 915 (1120)
+|+.+....|+.+++..... ...+......+.+++|++.++.++.+-...+.|+.+++..+... ..+........+++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 45555567799999886531 11111122357789999855666666667788999988765321 22222234567889
Q ss_pred EccCCC-EEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe---CCeEEEEEcCCcee
Q 001224 916 FSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTKLEC 991 (1120)
Q Consensus 916 ~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~---d~~v~i~d~~~~~~ 991 (1120)
+.+.+. +.++-...+.|.+++++.... ..+..... .....+++.|.+..|..+. .+.|..+++.....
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l~~~~~-----~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 157 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLR---KVLFWQEL-----DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 157 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSC-----SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcE---EEEEeCCC-----CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe
Confidence 987544 445555677899999876322 11111111 2458899999766665542 46788888764322
Q ss_pred eeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEE
Q 001224 992 VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1070 (1120)
Q Consensus 992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~ 1070 (1120)
..+.. ..-.....|+|+++++.|+.+. ..+.|..+|++.......+. + ..-.|..+++.. +.+++
T Consensus 158 -~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~---~~~~P~glav~~--~~lyw 223 (318)
T 3sov_A 158 -FIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------G---SLPHPFALTLFE--DILYW 223 (318)
T ss_dssp -EEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------S---CCSCEEEEEEET--TEEEE
T ss_pred -EEEEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------C---CCCCceEEEEeC--CEEEE
Confidence 22221 1134678999999877776664 45789999987543322221 1 112345677753 46677
Q ss_pred EEeCCCcEEEEecCCCC
Q 001224 1071 LGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1071 s~~~Dg~v~vW~~~~~~ 1087 (1120)
+-...+.|..++..+|+
T Consensus 224 td~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 224 TDWSTHSILACNKYTGE 240 (318)
T ss_dssp EETTTTEEEEEETTTCC
T ss_pred EecCCCeEEEEECCCCC
Confidence 77777899999987777
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.82 E-value=0.00021 Score=86.32 Aligned_cols=207 Identities=6% Similarity=-0.046 Sum_probs=125.7
Q ss_pred CCccEEEEccCCCEEEEEe--CCcEEEEEcCC----CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224 825 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 898 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 898 (1120)
..+..++|++.+..|.... .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567889998888877775 57899999875 22222222222345678888645666666566789999997754
Q ss_pred eeeEeecccccceEEEEEccCCCEEEEEeC-C-CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224 899 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 976 (1120)
Q Consensus 899 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~ 976 (1120)
.....+.........|++.|++.+|..+.. . +.|.+.+++.... ..... ... .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~-~~l-----~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT-ENI-----QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESC-SSC-----SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEe-CCC-----CCccEEEEeccCCEEEEE
Confidence 433333333345678999987665554443 2 6777777765221 11111 111 235789999987666654
Q ss_pred --eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224 977 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 977 --~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
..+.|..+++........+...........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 567899999875433222211112234455666443 444455566889999999998887765
No 295
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.81 E-value=0.013 Score=65.32 Aligned_cols=227 Identities=10% Similarity=0.010 Sum_probs=129.0
Q ss_pred CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE-ECCCeEEEEEccCCceee-e
Q 001224 386 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGGDEVR-Q 463 (1120)
Q Consensus 386 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~dg~v~iwd~~~~~~~~-~ 463 (1120)
...|+..++....... +......+..|+|++.+..|..+ ...+.|..+++.+..... .
T Consensus 91 ~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~ 150 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 150 (400)
T ss_dssp TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC
T ss_pred cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc
Confidence 3788888887654332 22234578999999976666655 456789889887632100 0
Q ss_pred eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec-CCeEE
Q 001224 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIK 542 (1120)
Q Consensus 464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~ 542 (1120)
...+.........+++.+.+.. ++++-...+.|.+.++........+.........+++.+.. +.+.++-.. .+.|.
T Consensus 151 ~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 151 DTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIK 228 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEE
T ss_pred eEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEE
Confidence 1122223456788999986665 55666677899999987655444444344456778876543 334444322 36777
Q ss_pred EEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEEecC
Q 001224 543 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDAD 621 (1120)
Q Consensus 543 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 621 (1120)
..+++...........-.....++++ +++..|+.+ ...+.|..+|++...........
T Consensus 229 ~~~~dG~~~~~~~~~~l~~P~glavd---------------------~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 229 KGGLNGVDIYSLVTENIQWPNGITLD---------------------LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEE---------------------TTTTEEEEEETTTTEEEEEETTSCCCEEEEECS
T ss_pred EEeCCCCccEEEEECCCCceEEEEEE---------------------eCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC
Confidence 77776433222222222334444444 444445554 45678999998654433333322
Q ss_pred CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 622 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 622 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
........+++. .+.++++-...+.|..++..++
T Consensus 288 ~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 288 KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 222334566663 3445555556778888886666
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=0.0056 Score=69.07 Aligned_cols=253 Identities=8% Similarity=0.006 Sum_probs=145.2
Q ss_pred CccEEEEcc-CCCEEEEEe--CCcEEEEEcCCCceeeeecCC---CCCeEEEEE-------ecCCCcEEEEEeCCC-c--
Q 001224 826 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMPP---PPAATFLAF-------HPQDNNIIAIGMDDS-S-- 889 (1120)
Q Consensus 826 ~v~~l~~s~-d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~d~~~lasg~~dg-~-- 889 (1120)
....|+|+| +...|.++. .+.|++.|++++......... ......++| ++ +++.|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455555554 367999999876665444322 235899999 99 777555555443 2
Q ss_pred ----EEEEEeec-ceee-----EeecccccceEEEEEccC-CCEEEEEeCCCCEEEEECC-------Cccc------c--
Q 001224 890 ----IQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEK------Q-- 943 (1120)
Q Consensus 890 ----v~vwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~v~iWd~~-------~~~~------~-- 943 (1120)
|.+++... ++.. ..+.. .....+++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 66665443 2221 12221 123457889995 5555566677889999987 4432 0
Q ss_pred --cceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC--Cceee--eccc----cCCC---------CC
Q 001224 944 --KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV--KQWV----PRES---------SA 1002 (1120)
Q Consensus 944 --~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~--~~~~~--~~~~----~~~h---------~~ 1002 (1120)
.......... .....++|+|+|++|.++ ....|+.++.. ++... ..+. ..++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0112222221 235799999999965554 56788886543 33210 1111 1111 12
Q ss_pred Cee-EEEEC-------CCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcc-------c----CCC---CCCCCccceEEE
Q 001224 1003 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAY-------L----PAG---VSSSNVHPLVIA 1060 (1120)
Q Consensus 1003 ~v~-~l~~s-------~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~-------~----~~g---~~~~~v~~~~i~ 1060 (1120)
... .++.. ++|.++++=.....|+.++ .+|... .+..... . ..| ....--.|..|+
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 344 45554 4566666666778899998 566433 3321100 0 011 011113477899
Q ss_pred ecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1061 AHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1061 ~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
++++++.++++=.....|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998436666766677889999887655
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.75 E-value=0.0086 Score=72.59 Aligned_cols=207 Identities=7% Similarity=-0.055 Sum_probs=128.5
Q ss_pred CCCccEEEEccCCCEEEEEe--CCcEEEEEcCCC----ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224 824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 897 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 897 (1120)
...+..+++++.+..|.... .+.|+.+++... .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 45577899998777776665 578999998752 222333334456788999984556666666778999999875
Q ss_pred ceeeEeecccccceEEEEEccCCCEEEEEeC-C-CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224 898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 975 (1120)
Q Consensus 898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~ 975 (1120)
......+........+|++.|.+.+|..+.. . +.|.+.+++.... ...+ ... ......|++++.+..|..
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~--~~lv---~~~---l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLV---TEN---IQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEE---CSS---CSCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce--EEEE---eCC---CCCceEEEEecCCCeEEE
Confidence 4433333334456889999998666665543 2 6688888776322 1111 111 124588999987777766
Q ss_pred E--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224 976 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 976 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
+ ....|..+++..............-....+|++. +.+|+.+. ..+.|...+..+|+.+..+.
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 4 5568999998655443333221223345667763 34555444 55788888887876665553
No 298
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.73 E-value=0.012 Score=63.27 Aligned_cols=210 Identities=10% Similarity=0.005 Sum_probs=123.3
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE-EE
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GV 443 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as 443 (1120)
..+.+++|++.+..|+.+-...+.|..+++..+..... ++...-.....+++.+.+..| ++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~ 96 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWT 96 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEE
Confidence 46779999997776777777788999999876532110 011122356789999855544 45
Q ss_pred EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEEEe
Q 001224 444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVC 522 (1120)
Q Consensus 444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~ 522 (1120)
-...+.|.+++.++..... .+.........+++.|.+..+|+.-.+..+.|...++.. .....+ ...-..-..++
T Consensus 97 d~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 97 DSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEE
T ss_pred ECCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEE
Confidence 4566889999988653221 122344567899999977653332223467888888653 333333 22234457788
Q ss_pred eccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224 523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 602 (1120)
Q Consensus 523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 602 (1120)
+++.. +.+.++-+..+.|..+|++.................++ +. .+..+.+-...+
T Consensus 173 vd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla---------------------v~-~~~lywtd~~~~ 229 (318)
T 3sov_A 173 LDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT---------------------LF-EDILYWTDWSTH 229 (318)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE---------------------EE-TTEEEEEETTTT
T ss_pred EeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE---------------------Ee-CCEEEEEecCCC
Confidence 86533 34445555678898888864332222211122222333 22 112344555677
Q ss_pred eEEEEECCCCceeEEEe
Q 001224 603 SIKFWDMDSVQLLTSID 619 (1120)
Q Consensus 603 ~i~iwd~~~~~~~~~~~ 619 (1120)
.|..++..+|+....+.
T Consensus 230 ~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 230 SILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEETTTCCSCEEEE
T ss_pred eEEEEECCCCCceEEEe
Confidence 88888887777655554
No 299
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.70 E-value=0.068 Score=55.47 Aligned_cols=235 Identities=14% Similarity=0.142 Sum_probs=151.7
Q ss_pred ccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeEeec
Q 001224 827 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK 905 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~ 905 (1120)
..+..++|..+.+|.-...++.+||+++.+.+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ....+.+.
T Consensus 69 AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 69 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp CSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEE
T ss_pred cceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeee
Confidence 4467789999988888888899999999888877663 34677777764 45666655 56899999975 34555565
Q ss_pred ccc----cceEEEEEccCCCEEEEEeC-------CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC----
Q 001224 906 GHS----KRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---- 970 (1120)
Q Consensus 906 ~h~----~~V~~l~~s~d~~~l~s~s~-------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg---- 970 (1120)
-|. ..|..-..+++.+|++..|- .|.+.+|..+.+ .-+..+||.. .-..+-.+|
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~ieGhaa-----~F~~~~~~g~~~~ 213 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA-----SFAQFKMEGNAEE 213 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT------EEEEECCSEE-----EEEEECCTTCSSC
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc------ccceeeeeee-----eeEEEecCCCCCC
Confidence 543 45777778899999875543 367889998873 3445555532 112222222
Q ss_pred -cEEEEEeC----CeEEEEEcCCc---e------eeec-cccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224 971 -IHFLVVHE----TQLAIFETTKL---E------CVKQ-WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus 971 -~~la~~~d----~~v~i~d~~~~---~------~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
.+++.+.. ++++|-++... . .+.. +.++.-.+-.-++..|+.-..++.-+.-|.|++||+.|+.+
T Consensus 214 ~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 214 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 23333322 58888888432 1 1111 12222355567788888888888889999999999999999
Q ss_pred eeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1036 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1036 ~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
+.+-+ +. ...|+ ..+.+.. ..=++.....|.|.--.+.+..
T Consensus 294 i~~nr----IS----~d~iF--~ta~~~~-~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 294 IYMNR----IS----GETIF--VTAPHEA-TAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEE----CC----SSCEE--EEEEEGG-GTEEEEEETTCEEEEEEECTTT
T ss_pred EEEec----cC----CCceE--EecccCC-CCcEEEEcCCCEEEEEEECccc
Confidence 98755 22 22244 2333332 2345555588888777776654
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=0.0064 Score=68.60 Aligned_cols=254 Identities=8% Similarity=0.020 Sum_probs=139.0
Q ss_pred ccEEEEEEcC-CCceEEEecc-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE---
Q 001224 758 TKISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL--- 832 (1120)
Q Consensus 758 ~~i~~l~~s~-~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~--- 832 (1120)
.....++|+| ++..|+.+.. .+.|++.|+ .++.+....-.+.........++|
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~----------------------~~~~v~~l~~~~~~~~~~p~~ia~~~~ 196 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDL----------------------KNRMLSSPLNINTIPTNRIRSIAFNKK 196 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEET----------------------TTTEEEEEECCTTSSCSBEEEEEECCC
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEEC----------------------CCCEEEEEEccCccccCCCcEEEEeec
Confidence 3567889998 3444555544 355555554 333222211111012345788999
Q ss_pred ----ccCCCEEEEEe-CC-c------EEEEEcCC-Ccee-----eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 833 ----SKNDSYVMSAS-GG-K------ISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 833 ----s~d~~~l~~~s-dg-~------i~vwd~~~-~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
+++|++|+++. .+ . |.+++... +... ..+. .......++++|+++.++++-..++.|+.+|
T Consensus 197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 99999777776 32 2 66665443 2221 1221 1123467889996667777777888999999
Q ss_pred ee-------ccee-----------eEee-c-ccccceEEEEEccCCCEE-EEEeCCCCEEEEECCCcccc--cceeeecc
Q 001224 895 VR-------VDEV-----------KSKL-K-GHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQ--KNRFLQIP 951 (1120)
Q Consensus 895 ~~-------~~~~-----------~~~l-~-~h~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd~~~~~~~--~~~~~~~~ 951 (1120)
+. ++.. ...+ . +....-..|+|+|+|++| ++-...+.|+.++.+..... ....+.-.
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~ 355 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG 355 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence 97 4443 1121 1 122345789999999964 44455677888665432110 00111111
Q ss_pred ---CCCCC------CCCCCc-EEEEc-------cCCcEEEE-EeCCeEEEEEcCCceeeeccccC------------C--
Q 001224 952 ---TGRTP------TAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E-- 999 (1120)
Q Consensus 952 ---~~~~~------~~~~i~-~~~fs-------pdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~------------~-- 999 (1120)
.+... ...... .++.. ++|.+.++ .....|+.++ .++. +.++... +
T Consensus 356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence 11110 001223 34444 45665555 4678899998 4453 3233211 1
Q ss_pred --------CCCCeeEEEECCC-CcEEEEEEcCCcEEEEEcCCccee
Q 001224 1000 --------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus 1000 --------h~~~v~~l~~s~d-g~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
.-.....|+++++ |.++++=.....|+.++++.....
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 1234778999987 666665556678998888765554
No 301
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.57 E-value=0.024 Score=68.71 Aligned_cols=174 Identities=6% Similarity=-0.103 Sum_probs=106.1
Q ss_pred eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224 357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 436 (1120)
Q Consensus 357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 436 (1120)
...++.....+.+|+|++.+..|+.+-...+.|+.+++......... ..++.........|++.+
T Consensus 416 ~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~---------------~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 416 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY---------------DTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C---------------EEEECSSCSCCCEEEEET
T ss_pred ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce---------------eEEEecCCCCcceeeeee
Confidence 34445556778899999977767777777788998888753210000 001222344677899998
Q ss_pred CCCeEEEE-ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224 437 DGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 515 (1120)
Q Consensus 437 dg~~las~-~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~ 515 (1120)
.++.|..+ ...+.|.+.++++..... .+...-.....|++.|.+..+|++-.+..+.|.+.++........+....
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~---l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l 557 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKT---LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 557 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEE---EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEE---EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence 77655554 556889999998654322 12233456889999998775444333444789999876444433333334
Q ss_pred cCeEEEeeccCCCceEEEEEecCCeEEEEecCCC
Q 001224 516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 549 (1120)
Q Consensus 516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 549 (1120)
.....|++.+.. +.+.++-...+.|...+++..
T Consensus 558 ~~P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 558 QWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp SCEEEEEEETTT-TEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEecCC-CeEEEEeCCCCcEEEEecCCC
Confidence 567778876543 334444445677888887653
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.48 E-value=0.013 Score=62.18 Aligned_cols=190 Identities=12% Similarity=0.133 Sum_probs=117.4
Q ss_pred CcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccC----CC---EEE-EEeC--CCCEEEEECCCccccccee
Q 001224 878 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---VLV-SSGA--DSQLCVWSSDGWEKQKNRF 947 (1120)
Q Consensus 878 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~---~l~-s~s~--Dg~v~iWd~~~~~~~~~~~ 947 (1120)
..+++.....+-+.+||+ +|+.++.+.. +.++.+..-|+ |+ +++ +.-. +++|.+|+++.....
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---- 112 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---- 112 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----
Confidence 345555566788999999 8888888864 56777776653 22 223 3333 578999988532211
Q ss_pred eeccCCC--C--CCCCCCcEEEE--ccC-Cc-EEEE-EeCCeEEEEEc-------CCceeeeccccCCCCCCeeEEEECC
Q 001224 948 LQIPTGR--T--PTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSC 1011 (1120)
Q Consensus 948 ~~~~~~~--~--~~~~~i~~~~f--spd-g~-~la~-~~d~~v~i~d~-------~~~~~~~~~~~~~h~~~v~~l~~s~ 1011 (1120)
+...... . .....+..+|+ +|. ++ ++++ ..++.+..|++ .+.+.++.+.. .+.+..+...+
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd 189 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADD 189 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEET
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcC
Confidence 2222110 0 00135677888 774 54 3444 57899999988 34567777765 45788999999
Q ss_pred CCcEEEEEEcCCcEEEEEcC-----CcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC-EEEEEe-CCCcEEEEecC
Q 001224 1012 DSQLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1084 (1120)
Q Consensus 1012 dg~~l~s~~~Dg~v~iwd~~-----~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~-~l~s~~-~Dg~v~vW~~~ 1084 (1120)
...+|+.+-+|.-|..++.. +++++..+. .++-...+.-+++-..+ +++ +|++.+ .++++.|||..
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~------~g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD------GRHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS------SSSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEec------CCccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence 99999999999766666654 345555443 12111124433343344 344 555555 67899999986
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.46 E-value=0.19 Score=54.40 Aligned_cols=236 Identities=14% Similarity=0.147 Sum_probs=152.9
Q ss_pred CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeEee
Q 001224 826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKL 904 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l 904 (1120)
...+.-++|..+.+|.-...++.+||+++.+.+..+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ....+.+
T Consensus 67 ~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 67 SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp CCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred ccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhhe
Confidence 345677889999898888889999999998888776633 3566666664 34566554 56899999974 3455556
Q ss_pred cccc----cceEEEEEccCCCEEEEEeC-------CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC---
Q 001224 905 KGHS----KRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--- 970 (1120)
Q Consensus 905 ~~h~----~~V~~l~~s~d~~~l~s~s~-------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg--- 970 (1120)
.-|. ..|..-..++|.+|++..|- .|.+.+|.++.+ .-+..+||.. .-..+-.+|
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~ieGhaa-----~F~~~~~~g~~~ 211 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA-----SFAQFKMEGNAE 211 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC------CEEEECCSEE-----EEEEEECTTCSS
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc------ccchheeeee-----eeEEEecCCCCC
Confidence 5543 45777778899999875442 367889998873 3445555532 112222222
Q ss_pred --cEEEEEeC----CeEEEEEcCCc---------eeeeccc-cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224 971 --IHFLVVHE----TQLAIFETTKL---------ECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus 971 --~~la~~~d----~~v~i~d~~~~---------~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
..++.+.. ++++|-++... +.+..+. ++.-.+-.-++..|+.-..++..+.-|.|++||+.|+.
T Consensus 212 ~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence 23333422 68999888542 1111112 22235556788888888888889999999999999999
Q ss_pred eeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1035 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1035 ~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
.+.+-. +. ...++ ..+.... ..=++.....|.|.--.+.+..
T Consensus 292 ~i~~nr----Is----~~~iF--~t~~~~~-~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 292 CIYMNR----IS----GETIF--VTAPHEA-TAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEEE----CC----SSCEE--EEEEETT-TTEEEEEETTCEEEEEEECTTT
T ss_pred eeeeec----cc----CCceE--EecccCC-CCcEEEEccCceEEEEEEcccc
Confidence 998755 22 22244 3333332 3345555588888777776654
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.41 E-value=0.073 Score=58.09 Aligned_cols=232 Identities=11% Similarity=0.101 Sum_probs=124.4
Q ss_pred CCccEEEEccCCCEEEEEeCCcEEEEEcCCCc-eeeeec---CCCCCeEEEEEecC---CCcEEEEEeC---C----CcE
Q 001224 825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATFM---PPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI 890 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---d~~~lasg~~---d----g~v 890 (1120)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........|+++|+ ++.+.++-.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3467899999998666655899999974 443 222221 12356899999993 3555444332 3 567
Q ss_pred EEEEeecc-------ee-eEeecc-cccceEEEEEccCCCEEEEEeCC-------------CCEEEEECCCcccc-----
Q 001224 891 QIYNVRVD-------EV-KSKLKG-HSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQ----- 943 (1120)
Q Consensus 891 ~vwd~~~~-------~~-~~~l~~-h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~iWd~~~~~~~----- 943 (1120)
..|+.... +. +..+.. .......|+|.|||.+.++.+.. |.|.-.+.+..-..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 77776543 11 111221 11124679999999877775432 23433333321000
Q ss_pred cceeeeccCCCCCCCCCCcEEEEcc-CCcEEEE--EeCC--eEEEEEcCCcee----------------eeccccCCCCC
Q 001224 944 KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV--VHET--QLAIFETTKLEC----------------VKQWVPRESSA 1002 (1120)
Q Consensus 944 ~~~~~~~~~~~~~~~~~i~~~~fsp-dg~~la~--~~d~--~v~i~d~~~~~~----------------~~~~~~~~h~~ 1002 (1120)
..... ..++ .....++|+| +|.+.++ +.+. .|.+.. .+.- ...+.......
T Consensus 188 ~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ 259 (354)
T 3a9g_A 188 NSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETW 259 (354)
T ss_dssp TCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred CCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence 00111 1122 1357899999 6776666 2222 343332 2220 00011101134
Q ss_pred CeeEEEEC-------CCCcEEEEEEcCCcEEEEEcCCc-ceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224 1003 PITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus 1003 ~v~~l~~s-------~dg~~l~s~~~Dg~v~iwd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
.+..++|. .+|.++++....+.|...++... +..... .++. + ..-.+..+++.| ||.+.++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~~~-~---~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS---TFFK-N---VFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE---EECT-T---TSCCEEEEEECT-TSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee---eecc-C---CCCCeeEEEECC-CCcEEEEEe
Confidence 67888884 57777777666778888888753 332111 1111 1 113456899999 676666654
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.40 E-value=0.034 Score=60.77 Aligned_cols=232 Identities=13% Similarity=0.088 Sum_probs=119.8
Q ss_pred CCccEEEEccCCCEEEEEeCCcEEEEEcCCCce--eeeec---CCCCCeEEEEEecCC----CcEEEEEeCC-----CcE
Q 001224 825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFM---PPPPAATFLAFHPQD----NNIIAIGMDD-----SSI 890 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~sp~d----~~~lasg~~d-----g~v 890 (1120)
.....++|.|||+++++-.+|.|++++ +++. +..+. ........|+|+| + +.+.++-... +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEE
Confidence 346789999999966665589999998 3332 22221 1245689999999 5 4444444332 678
Q ss_pred EEEEeecc-----e-eeEeec---ccccceEEEEEccCCCEEEEEeCC-------------CCEEEEECCCccc------
Q 001224 891 QIYNVRVD-----E-VKSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEK------ 942 (1120)
Q Consensus 891 ~vwd~~~~-----~-~~~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~iWd~~~~~~------ 942 (1120)
..|+...+ + .+..+. +.......|+|.|||.+.++.+.. |.|.-++.+..-.
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 88887643 1 122233 111123689999999877765432 3344444432000
Q ss_pred ----ccceeeeccCCCCCCCCCCcEEEEcc-CCcEEEEE-eCCeE------EEEEcCCcee----------------eec
Q 001224 943 ----QKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV-HETQL------AIFETTKLEC----------------VKQ 994 (1120)
Q Consensus 943 ----~~~~~~~~~~~~~~~~~~i~~~~fsp-dg~~la~~-~d~~v------~i~d~~~~~~----------------~~~ 994 (1120)
...... ..++ .....++|+| +|.+.++- ....+ .|.-+..+.- ...
T Consensus 188 ~~~~~~~~i~--a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVY--SLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEE--EECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEE--EEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000010 0111 1246789999 67766662 22221 2332232320 000
Q ss_pred cccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceee-eeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224 995 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus 995 ~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
+.. .+......++| .+|.++++....+.|...+++...... ......++. . .-.+..+++.| ||.++++..
T Consensus 262 ~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~----~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 262 YFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-G----FGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp EEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-S----SCCEEEEEECT-TSCEEEEEC
T ss_pred Eec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-c----CCCeeEEEECC-CCcEEEEEe
Confidence 111 12335677888 567766666566778877776543210 000011111 1 12456899998 576665553
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.39 E-value=0.001 Score=80.22 Aligned_cols=223 Identities=6% Similarity=-0.101 Sum_probs=121.2
Q ss_pred ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
....++.....+..|+|++++..|+++-...+.|..+++.+...... . ..++.........|++.
T Consensus 397 ~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-~--------------~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 397 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-Y--------------DTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC-C--------------CCBCCSCC--CCCEECC
T ss_pred cceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc-e--------------EEEEeCCCCCcceEEEE
Confidence 34444445567889999998876666656678899998875110000 0 00111112235568888
Q ss_pred CCCC-eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc
Q 001224 436 PDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 514 (1120)
Q Consensus 436 pdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h 514 (1120)
+.+. ++++-...+.|.+.++.+..... .+.........|++.|.+..+|++-.+..+.|.+.++........+...
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~---l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~ 538 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKT---LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 538 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEE---ECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEE---EEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC
Confidence 6544 44444556789999988654222 1222234567889999777533322223378888876533222222222
Q ss_pred ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC--CCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224 515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592 (1120)
Q Consensus 515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~ 592 (1120)
......|++.+.. +.+.++-+..+.|..++++.......+... ...... +++..+
T Consensus 539 l~~PnGlavd~~~-~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~g---------------------lavd~~- 595 (699)
T 1n7d_A 539 IQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS---------------------LAVFED- 595 (699)
T ss_dssp CSSCCCEEECTTT-CCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCC---------------------CEEETT-
T ss_pred CCCccEEEEeccC-CEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceE---------------------eEEECC-
Confidence 2334567775543 345555556778988888643222111110 011111 222222
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEe
Q 001224 593 NRFLAAGDDFSIKFWDMDSVQLLTSID 619 (1120)
Q Consensus 593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~ 619 (1120)
..+++....+.|..++..+++.+..+.
T Consensus 596 ~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 596 KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 234455567889999988888776664
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.37 E-value=0.027 Score=59.29 Aligned_cols=203 Identities=11% Similarity=0.063 Sum_probs=123.3
Q ss_pred CCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeee-ecC----CC--CCeEEEEE---ecCCCcEEEEEeC-----
Q 001224 824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMP----PP--PAATFLAF---HPQDNNIIAIGMD----- 886 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~i~~l~~---sp~d~~~lasg~~----- 886 (1120)
..-..+++|.+....+..++ .++|..|+...+..... +.. .. ..+..|.| .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 33456789988666666666 89999999976544333 222 11 13578999 68 6888886442
Q ss_pred --------CCcEEEEEee---cceeeEeec--ccc-----------cceEEEEEccCCCEEEEEeCC-CCEEEEECCCcc
Q 001224 887 --------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWE 941 (1120)
Q Consensus 887 --------dg~v~vwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~s~D-g~v~iWd~~~~~ 941 (1120)
+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+..
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~- 169 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK- 169 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-
Confidence 6789999999 777664433 211 247899999999999988877 76665555542
Q ss_pred cccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccC--C---CCCCeeEE-EECCCCc
Q 001224 942 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--E---SSAPITHA-TFSCDSQ 1014 (1120)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~--~---h~~~v~~l-~~s~dg~ 1014 (1120)
......+..... ......+.++++|+|..|++. ..+.+..+|+.+-... .+... + .......| ..-.+|+
T Consensus 170 ~~~~~~~~~~~~--~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 170 TVSTFAWESGNG--GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp CEEEEEECCCCS--SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred EEeeeeecCCCc--ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCE
Confidence 111111111111 111346799999999988884 5889999998843220 11111 1 11223343 3334777
Q ss_pred E-EEEEEcCCcEEEEEcC
Q 001224 1015 L-VYACFLDATVCVFSAA 1031 (1120)
Q Consensus 1015 ~-l~s~~~Dg~v~iwd~~ 1031 (1120)
. |++.+..+.+.+.+.+
T Consensus 247 vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEEEETTEEEEEECSS
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 7 4455556655555543
No 308
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.21 E-value=0.27 Score=51.06 Aligned_cols=248 Identities=8% Similarity=0.077 Sum_probs=153.9
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224 369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 448 (1120)
Q Consensus 369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg 448 (1120)
+.-.+|..+ ++|.=. ..++.|+|+++.+++....+ ...|.-=.|-.+. .|+-.+ +.
T Consensus 71 sAIMnP~~~-ViALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~t 126 (365)
T 2xzh_A 71 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 126 (365)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSS-EEEEEE-SS
T ss_pred eeeeCCCcc-EEEEec-CCeEEEechHHhhhhcceec--------------------CCccEEEEecCCC-eEEEEc-CC
Confidence 344588877 455544 58899999999988775332 2356666665443 444444 45
Q ss_pred eEEEEEccCCceeeeeeeecccc----cCeEEEEEcCCCCceEEEEec------CCCcEEEEECCCCceeEEeeccccCe
Q 001224 449 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 518 (1120)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~h~~~v 518 (1120)
.|.-|++++.....+ .+..|. ..|..-..+++.+. ++++|- -.|.+.+|..+. +.-+.++||.+..
T Consensus 127 aVyHWs~~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F 202 (365)
T 2xzh_A 127 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 202 (365)
T ss_dssp EEEEEESSTTCCCEE--EEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEE
T ss_pred cEEEEcccCCCCCce--eeecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeecc-cccceeeeeeeee
Confidence 699999986443322 233332 36777788888886 333332 236788999654 4457788887766
Q ss_pred EEEeeccCCCce-EEEEEec---CCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224 519 YSVCPHHKENIQ-FIFSTAL---DGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 593 (1120)
Q Consensus 519 ~~~~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~ 593 (1120)
..+.+...+... +++.+.. .+.+++-++.... .. ..-......+.|.|+.. .+....+.+++.-.
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---~~f~kk~vdi~fppea~-------~DFPVamqvs~kyg 272 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 272 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC---CCCCCEEEEECCCTTCT-------TCCEEEEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC---CCcccccceeeCCcccc-------CCceEEEEecccCC
Confidence 555443222222 3333332 2588888885531 11 11223345566666543 22344566677777
Q ss_pred EEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 594 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 594 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
.+...+.-|.|++||+.++.++..-..... .|...+.+.+..-++.....|.|.-..++..
T Consensus 273 viyviTK~G~ihlyDleTgt~i~~nrIS~d--~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEEEeCCcEEEEEEcccCcEEEEeccCCC--ceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 888999999999999999999988765443 4544455444445555668888877777665
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.18 E-value=0.14 Score=55.79 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=63.1
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC---CC
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 439 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~ 439 (1120)
.-...+.|+|.|||+ ++++ ..+|.|.+++ +++..... ++. +..........|+|+|| +.
T Consensus 29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~-----~~~---------v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYA-----ELS---------VYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEE-----ECC---------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEee-----cce---------EeecCCCCceeEEECCCCCCCC
Confidence 345678999999998 4544 5669999998 44321100 000 11222456889999998 55
Q ss_pred eEEEEEC-C-----CeEEEEEccCCce--eeeee-eec---ccccCeEEEEEcCCCCceEEEEe
Q 001224 440 LFGVAYS-R-----HIVQIYSYHGGDE--VRQHL-EID---AHVGGVNDIAFSHPNKQLCVITC 491 (1120)
Q Consensus 440 ~las~~~-d-----g~v~iwd~~~~~~--~~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~ 491 (1120)
+|..+.. . +.|..|+...+.. .+... .+. +.......++|.|||. ++++.
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 5555433 2 6788888775421 11111 122 1111336899999996 44443
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.15 E-value=0.099 Score=57.07 Aligned_cols=241 Identities=11% Similarity=0.090 Sum_probs=126.2
Q ss_pred CccEEEEccCCC-EEEEEeCCcEEEEEcCCCcee---eee----cCCCCCeEEEEEecC---CCcEEEEEeC-------C
Q 001224 826 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTM---ATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------D 887 (1120)
Q Consensus 826 ~v~~l~~s~d~~-~l~~~sdg~i~vwd~~~~~~~---~~~----~~~~~~i~~l~~sp~---d~~~lasg~~-------d 887 (1120)
....++|.|+|+ ++++-..|.|++++.. +... ..+ .........++++|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 6655558999999854 3221 111 112345789999993 3544444332 2
Q ss_pred CcEEEEEeecc-------eee-Eeec-----ccccceEEEEEccCCCEEEEEeCC-------------CCEEEEECCCcc
Q 001224 888 SSIQIYNVRVD-------EVK-SKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWE 941 (1120)
Q Consensus 888 g~v~vwd~~~~-------~~~-~~l~-----~h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~iWd~~~~~ 941 (1120)
..|..|++..+ +.+ ..+. .|. -..|+|.|||.+.++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 111 1121 132 3579999999766665432 345555544310
Q ss_pred cc----------cceeeeccCCCCCCCCCCcEEEEcc-CCcEEEEE--eCCeEEEEEcCCceee----------------
Q 001224 942 KQ----------KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKLECV---------------- 992 (1120)
Q Consensus 942 ~~----------~~~~~~~~~~~~~~~~~i~~~~fsp-dg~~la~~--~d~~v~i~d~~~~~~~---------------- 992 (1120)
.. ...... .++ .....++|+| +|.+.++- .++.=.|.-+..+.-.
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEE--EcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 000110 111 1357899999 67666662 2222223222222110
Q ss_pred --------eccccC----CCCCCeeEEEECC-------CCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCC
Q 001224 993 --------KQWVPR----ESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1053 (1120)
Q Consensus 993 --------~~~~~~----~h~~~v~~l~~s~-------dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 1053 (1120)
..+... .+...+..++|.. +|+++++....+.|...++..++...... ++. + ..
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~---~~ 322 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-D---RG 322 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-G---GC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-C---CC
Confidence 000000 1234577788864 57777776677888888887665443221 111 1 11
Q ss_pred ccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224 1054 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus 1054 v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
-.+..+++.| ||.++++.. ++.=+||++.
T Consensus 323 ~rp~~v~~~p-dG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp CCEEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred CceeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence 2466899999 677655433 2333566653
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.04 E-value=0.52 Score=51.22 Aligned_cols=109 Identities=19% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC---CC
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 439 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~ 439 (1120)
.-...+.|+|.|||+ |+++ ..+|.|.+++ .+++... ..+. +..........|+|+|+ +.
T Consensus 27 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~-~~~~--------------v~~~g~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLV-ASFD--------------VANVGEAGLLGLALHPEFPKKS 88 (354)
T ss_dssp SCSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEE-EECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEe-eccc--------------eeecCCCceeeEEeCCCCCcCC
Confidence 345688999999998 4444 5669999997 3444111 0000 11122346889999998 55
Q ss_pred eEEEEEC----C----CeEEEEEccCC--ce--eeeee-eec-ccccCeEEEEEcCCCCceEEEEe
Q 001224 440 LFGVAYS----R----HIVQIYSYHGG--DE--VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC 491 (1120)
Q Consensus 440 ~las~~~----d----g~v~iwd~~~~--~~--~~~~~-~l~-~h~~~V~~v~~s~d~~~~~l~s~ 491 (1120)
+|..+.. + ..|..|+...+ .. .+.+. .+. +.......|+|.|||. ++++.
T Consensus 89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~ 152 (354)
T 3a9g_A 89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITT 152 (354)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEE
Confidence 5555433 3 56777877654 11 11111 121 1111346799999997 44443
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.99 E-value=0.57 Score=50.76 Aligned_cols=249 Identities=8% Similarity=0.074 Sum_probs=153.5
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224 369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 448 (1120)
Q Consensus 369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg 448 (1120)
+.-.+|..+ ++|.=. ..++.|+|+++.+++....+ ...|..=.|-.+ +.|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~-~~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISL-NTVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEET-TEEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCC-CeEEEEc-CC
Confidence 455677777 455443 58999999999888765332 224555555433 3444443 56
Q ss_pred eEEEEEccCCceeeeeeeecccc----cCeEEEEEcCCCCceEEEEec------CCCcEEEEECCCCceeEEeeccccCe
Q 001224 449 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 518 (1120)
Q Consensus 449 ~v~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~h~~~v 518 (1120)
.|+-|++++.....+ .+..|. ..|..-..+++.+. ++++|- -.|.+.+|..+.+ .-+.+.||.+..
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 699999986433222 333332 36777788899886 333332 3467889996544 457788888777
Q ss_pred EEEeeccCCCce-EEEEEec---CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224 519 YSVCPHHKENIQ-FIFSTAL---DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 594 (1120)
Q Consensus 519 ~~~~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~ 594 (1120)
..+.+....... .++.+.. .+.+++-++.....-. ..-......+.|.|+.. .+.-..+.+++.-..
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~--~~f~kk~vdv~fppe~~-------~DFPvamqvs~kygv 272 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHDV 272 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC--CCCCCEEEECCCCTTST-------TCCEEEEEEETTTTE
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC--CCccceeeeeeCCcccc-------cCceeEEEecccCCE
Confidence 666543222222 3333333 2788888886531100 11122344555666543 223445667777778
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224 595 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656 (1120)
Q Consensus 595 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 656 (1120)
+...+.-|.|++||+.++.++..-..... .|...+...+..-++.....|.|.-..++..
T Consensus 273 iyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 273 VFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 89999999999999999999987765433 4554555555555666668888877777655
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.98 E-value=0.15 Score=54.31 Aligned_cols=228 Identities=10% Similarity=0.052 Sum_probs=120.1
Q ss_pred EEEEEe---CCcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEeecce--eeEeecc
Q 001224 838 YVMSAS---GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDE--VKSKLKG 906 (1120)
Q Consensus 838 ~l~~~s---dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~--~~~~l~~ 906 (1120)
.++.|+ ...+.+||..+.+-. ..+........++. - ++++++.|+.+ ..+.+||..+.+ .+..+..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 444554 256999998875432 22222222222222 3 67788888765 568888887754 3333322
Q ss_pred cccceEEEEEccCCCEEEEEeCC------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e--
Q 001224 907 HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-- 977 (1120)
Q Consensus 907 h~~~V~~l~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~-- 977 (1120)
....-.++.+ +++.++.|+.+ ..+.+||..+.+-. .+..... + ..-.+++. -++++++.| .
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~--~--r~~~~~~~-~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH---TKPSMLT--Q--RCSHGMVE-ANGLIYVCGGSLG 160 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE---EECCCSS--C--CBSCEEEE-ETTEEEEECCEES
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE---eCCCCcC--C--cceeEEEE-ECCEEEEECCCCC
Confidence 2222222222 67777888765 45888998875421 1111111 1 11122222 366666663 2
Q ss_pred -------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceeeeeCCCccc
Q 001224 978 -------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYL 1045 (1120)
Q Consensus 978 -------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~~~~~~~~~ 1045 (1120)
-..+.+||..+.+-...-.... ...-.+++. -++++++.|+.+ ..+.+||..+.+-...-. .
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~ 234 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP----M 234 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC----C
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC----C
Confidence 3458899998875443322111 111112222 267777777654 358999998876543211 2
Q ss_pred CCCCCCCCccceEEEecCCCCCEEEEEeCC-----CcEEEEecCCCCCCCCCC
Q 001224 1046 PAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus 1046 ~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~~~~~~~ 1093 (1120)
|..... .+++.. ++.+++.|+.+ ..+.+||+.+.+ |...
T Consensus 235 p~~r~~-----~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~ 278 (306)
T 3ii7_A 235 PWKGVT-----VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK--WVAN 278 (306)
T ss_dssp SCCBSC-----CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE--EEEE
T ss_pred CCCccc-----eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEeC
Confidence 221101 123333 46788888865 467888887755 6553
No 314
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.90 E-value=0.019 Score=60.35 Aligned_cols=166 Identities=11% Similarity=0.043 Sum_probs=105.1
Q ss_pred ceEEEEEccC-CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC---CCCCCCcEEEE---ccCCcEEEEEe-----
Q 001224 910 RITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT---PTAQSDTRVQF---HQDQIHFLVVH----- 977 (1120)
Q Consensus 910 ~V~~l~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~f---spdg~~la~~~----- 977 (1120)
---++.|.+. +.++++.-..++|..|+...+... .+ ...+.. .....+..+.+ .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~---~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF---NV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE---EE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE---EE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3446889774 445555557999999998754321 12 222211 11123478899 68888888643
Q ss_pred ---------CCeEEEEEcC---CceeeeccccCC-----------CCCCeeEEEECCCCcEEEEEEcC-CcEEEEEcCCc
Q 001224 978 ---------ETQLAIFETT---KLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACFLD-ATVCVFSAANL 1033 (1120)
Q Consensus 978 ---------d~~v~i~d~~---~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~~~D-g~v~iwd~~~~ 1033 (1120)
+..|..||+. +++.+....... -......++..++|+..++++.- +.|...+.+..
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 5779999999 776654332211 01347899999999998888887 77776666544
Q ss_pred ceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1034 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1034 ~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
....... . .+.... ..-+..|+++| |+++|++...+|.|..+|+..
T Consensus 170 ~~~~~~~--~-~~~~~~--~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAW--E-SGNGGQ--RPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEE--C-CCCSSS--CCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeee--c-CCCccc--ccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 3222111 0 111111 12234899999 688888887799999999883
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.86 E-value=0.091 Score=55.97 Aligned_cols=221 Identities=10% Similarity=0.077 Sum_probs=115.5
Q ss_pred CcEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEeecce-----eeEeecccccceE
Q 001224 845 GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE-----VKSKLKGHSKRIT 912 (1120)
Q Consensus 845 g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~-----~~~~l~~h~~~V~ 912 (1120)
..+.+||..+.+-.. .+....... +++ .. ++++++.|+.+ ..+.+||..+.+ .+..+......-.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEE-EE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccc-cEE-EE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 358899987654322 122111112 222 23 67788888765 368899987644 3333322222222
Q ss_pred EEEEccCCCEEEEEeCCC-----CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eC-----CeE
Q 001224 913 GLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----TQL 981 (1120)
Q Consensus 913 ~l~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d-----~~v 981 (1120)
++.+ +++.++.|+.++ .+.+||..+.+-.. +...... ..-..++ .-+++.++.| .+ ..+
T Consensus 108 ~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~----r~~~~~~-~~~~~iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 108 ATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM---LGDMQTA----REGAGLV-VASGVIYCLGGYDGLNILNSV 177 (301)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE---EEECSSC----CBSCEEE-EETTEEEEECCBCSSCBCCCE
T ss_pred EEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE---CCCCCCC----cccceEE-EECCEEEEECCCCCCcccceE
Confidence 2222 677777777553 47788887754222 2111111 1112222 2366666664 32 468
Q ss_pred EEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccc
Q 001224 982 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1056 (1120)
Q Consensus 982 ~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 1056 (1120)
.+||..+.+-...-........-..+. -++++++.|+.+ ..+.+||..+.+-...-. .|..... .
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~r~~---~- 247 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTPRCY---V- 247 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSCCBS---C-
T ss_pred EEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCcccc---e-
Confidence 999998876543321111111122222 267777878764 468999998886554321 2221101 1
Q ss_pred eEEEecCCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCC
Q 001224 1057 LVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus 1057 ~~i~~~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~ 1093 (1120)
+++.. ++.+++.|+.++ .+.+||+.+.+ |...
T Consensus 248 -~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~ 284 (301)
T 2vpj_A 248 -GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEVV 284 (301)
T ss_dssp -EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE--EEEE
T ss_pred -eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe--EEEc
Confidence 23333 467888887663 56778877654 6543
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.78 E-value=0.25 Score=52.46 Aligned_cols=230 Identities=12% Similarity=0.116 Sum_probs=119.1
Q ss_pred CCEEEEEe-C----CcEEEEEcCCCceeee--ecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeecce--ee
Q 001224 836 DSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE--VK 901 (1120)
Q Consensus 836 ~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~--~~ 901 (1120)
+..++.|+ + ..+.+||..+.+-... +......- +++. - ++++++.|+.++ .+.+||..+.+ .+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 34455554 2 4588899876543221 22111111 2222 2 677888887553 58888887654 23
Q ss_pred EeecccccceEEEEEccCCCEEEEEeCCC-----CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224 902 SKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 976 (1120)
Q Consensus 902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~ 976 (1120)
..+......-.++.+ +++.++.|+.++ .+.+||+.+.+-. .+..... + ..-.+++. -+++.++.|
T Consensus 93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~--~--r~~~~~~~-~~~~iyv~G 162 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF---HVAPMNT--R--RSSVGVGV-VGGLLYAVG 162 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE---EECCCSS--C--CBSCEEEE-ETTEEEEEC
T ss_pred CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe---ecCCCCC--c--ccCceEEE-ECCEEEEEe
Confidence 323222222222222 677778887664 4677887764321 1111111 1 11122222 356666663
Q ss_pred -e-------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceeeeeCCCc
Q 001224 977 -H-------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSA 1043 (1120)
Q Consensus 977 -~-------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~~~~~~~ 1043 (1120)
. -..+.+||..+.+-...-........-..+. -++++++.|+.+ ..+.+||..+.+-...-.
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--- 237 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD--- 237 (302)
T ss_dssp CEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred CCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence 2 2358899998875443321111111122222 267888888765 369999998876553321
Q ss_pred ccCCCCCCCCccceEEEecCCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCC
Q 001224 1044 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus 1044 ~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~ 1093 (1120)
.+...... +++.. ++.+++.|+.++ .+.+||+.+.+ |...
T Consensus 238 -~~~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~ 282 (302)
T 2xn4_A 238 -MNMCRRNA-----GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTVV 282 (302)
T ss_dssp -CSSCCBSC-----EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEEC
T ss_pred -CCCccccC-----eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEEC
Confidence 22111011 23333 467888888764 48888888765 6543
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.61 E-value=0.24 Score=52.54 Aligned_cols=188 Identities=9% Similarity=0.031 Sum_probs=99.6
Q ss_pred cCCCEEEEEe-C-----CcEEEEEcCCCc-----eeeeecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeec
Q 001224 834 KNDSYVMSAS-G-----GKISLFNMMTFK-----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRV 897 (1120)
Q Consensus 834 ~d~~~l~~~s-d-----g~i~vwd~~~~~-----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~ 897 (1120)
.+++.++.|+ + ..+.+||..+.+ .+..+........++ . . ++++++.|+.++ .+.+||+.+
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~-~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT-T-L-GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE-E-E-TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE-E-E-CCEEEEEcccCCCcccceEEEEcCCC
Confidence 3566666665 3 358999987755 222222222222222 2 2 677888887543 588888776
Q ss_pred ce--eeEeecccccceEEEEEccCCCEEEEEeCC-----CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC
Q 001224 898 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 970 (1120)
Q Consensus 898 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg 970 (1120)
.+ .+..+......-.++. -+++.++.|+.+ ..+.+||+.+.+-. .+..... + ..-..++ .-++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~--~--r~~~~~~-~~~~ 207 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWT---NVTPMAT--K--RSGAGVA-LLND 207 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEE---EECCCSS--C--CBSCEEE-EETT
T ss_pred CeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEE---eCCCCCc--c--cccceEE-EECC
Confidence 43 3333322222112222 267777888765 35888998775422 1111111 1 1112222 2356
Q ss_pred cEEEEE-e-----CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCccee
Q 001224 971 IHFLVV-H-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1036 (1120)
Q Consensus 971 ~~la~~-~-----d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~ 1036 (1120)
+.++.| . ...+.+||..+.+-...-...........+. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 666664 3 2469999998876543322111111122222 277787878765 35788888876544
No 318
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.50 E-value=0.12 Score=56.11 Aligned_cols=108 Identities=11% Similarity=0.076 Sum_probs=79.8
Q ss_pred EEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCC----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce------
Q 001224 830 FALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE------ 899 (1120)
Q Consensus 830 l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~------ 899 (1120)
...+.+|..++.+.++.||.-++.....-+.+... ...|..+..+| +|++||..+ +..|.|-.+..+.
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 45567888898888999999998754444444432 23688899999 999999876 5588998887321
Q ss_pred ------eeEeecc------cccceEEEEEccC---CCEEEEEeCCCCEEEEECCC
Q 001224 900 ------VKSKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 900 ------~~~~l~~------h~~~V~~l~~s~d---~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
....+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 0112211 3567999999986 46899999999999999987
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.50 E-value=0.65 Score=52.34 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=62.8
Q ss_pred CCccEEEEccCCCEEEEEeC-CcEEEEEcCCCcee--eeecC------CCCCeEEEEEecC---CCcEEEEEeC------
Q 001224 825 EAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD------ 886 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~sd-g~i~vwd~~~~~~~--~~~~~------~~~~i~~l~~sp~---d~~~lasg~~------ 886 (1120)
.....++|.|+|+++++-.. +.|++++..++... ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999998887765 47988886555432 22221 2456789999994 3444444332
Q ss_pred ------CCcEEEEEeecc-------eee-Eeecc-cccceEEEEEccCCCEEEEEeC
Q 001224 887 ------DSSIQIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGA 928 (1120)
Q Consensus 887 ------dg~v~vwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~ 928 (1120)
...|.-|++..+ +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665431 111 11221 1123678999999998887654
No 320
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.43 E-value=0.16 Score=63.49 Aligned_cols=237 Identities=13% Similarity=0.142 Sum_probs=142.3
Q ss_pred ccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeEeec
Q 001224 827 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK 905 (1120)
Q Consensus 827 v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~ 905 (1120)
..+..++|..+.+|.-...++.|||+.+.+.+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+.+.+.
T Consensus 68 AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred chhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 3456678888888887788899999998777766553 33566666664 44565554 56899999964 23444454
Q ss_pred cc----ccceEEEEEccCCCEEEEEe-------CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEE---ccCCc
Q 001224 906 GH----SKRITGLAFSHALNVLVSSG-------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF---HQDQI 971 (1120)
Q Consensus 906 ~h----~~~V~~l~~s~d~~~l~s~s-------~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f---spdg~ 971 (1120)
-| ...|..-..+++.+|++..| -.|.+.+|+++.+ ..+...||.... ..+.. .+...
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------~sQ~iegha~~F---~~~~~~~~~~~~~ 214 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAASF---AQFKMEGNAEEST 214 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------cchhhhHhHhhh---heeccCCCCCCce
Confidence 44 45677778889999987544 3478889988873 234444543211 11111 11122
Q ss_pred EEEEEe----CCeEEEEEcCCc---e------eeeccc-cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceee
Q 001224 972 HFLVVH----ETQLAIFETTKL---E------CVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC 1037 (1120)
Q Consensus 972 ~la~~~----d~~v~i~d~~~~---~------~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~ 1037 (1120)
.++.+. .+.++|-++... . .+..+. +..-.+-..++..|+.-..+...+.-|.|.+||+.||..+.
T Consensus 215 l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 333232 267888887543 1 111111 11124445567778877788888889999999999999986
Q ss_pred eeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224 1038 RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus 1038 ~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
.-. +. +..|+ ..+.....+. ++.....|.|.--.+.+..
T Consensus 295 ~~r----is----~~~iF--~~~~~~~~~g-~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 295 MNR----IS----GETIF--VTAPHEATAG-IIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred hcc----cc----CCceE--EeccCCCCCc-eEEEcCCceEEEEEEccch
Confidence 544 11 12233 2222322233 3344467777666666544
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.38 E-value=1 Score=48.08 Aligned_cols=223 Identities=9% Similarity=0.078 Sum_probs=114.6
Q ss_pred CcEEEEEcCCCceee-eecCCCCCeEEEEEecCCCcEEEEEeC-----C------CcEEEEEeecce--eeEeecccccc
Q 001224 845 GKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD-----D------SSIQIYNVRVDE--VKSKLKGHSKR 910 (1120)
Q Consensus 845 g~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~-----d------g~v~vwd~~~~~--~~~~l~~h~~~ 910 (1120)
..+.+||..+.+-.. .+..........+... ++++++.|+. . ..+.+||..+++ .+..+......
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 91 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL 91 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence 678999988765432 2222222333333344 7778888873 1 127778877654 22222211111
Q ss_pred eEEEEEccCCCEEEEEeCC--------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e-C--
Q 001224 911 ITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E-- 978 (1120)
Q Consensus 911 V~~l~~s~d~~~l~s~s~D--------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~-d-- 978 (1120)
-..+.+ +++.++.|+.+ ..+.+||..+.+-. .+..... + .....+..-+++.++.| . +
T Consensus 92 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~--~---r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 92 FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPY--V---VYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE---ECCCCSS--C---CBSCEEEEETTEEEEECCBCTTS
T ss_pred eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe---ECCCCCC--c---ccceeEEEECCEEEEEeCCCCCC
Confidence 122222 56777777743 35888898875321 1111111 1 11222223566666664 3 2
Q ss_pred ---CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC-----cEEEEEcCCcceeeeeCCCcccCCCCC
Q 001224 979 ---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGVS 1050 (1120)
Q Consensus 979 ---~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-----~v~iwd~~~~~~~~~~~~~~~~~~g~~ 1050 (1120)
..+.+||..+.+-...-........-..+. -++++++.|+.++ .+.+||..+.+-...-. .|....
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~ 235 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQERS 235 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCCB
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCccc
Confidence 468999998875443322111111112222 2778888887654 58899998876554321 222111
Q ss_pred CCCccceEEEecCCCCCEEEEEeCCC--------------cEEEEecCCCCCCCCCC
Q 001224 1051 SSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus 1051 ~~~v~~~~i~~~p~d~~~l~s~~~Dg--------------~v~vW~~~~~~~~~~~~ 1093 (1120)
.. +++.. ++.+++.|+.++ .+.+||+.+.+ |...
T Consensus 236 ~~-----~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~ 283 (315)
T 4asc_A 236 SL-----SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGV 283 (315)
T ss_dssp SC-----EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEE
T ss_pred ce-----eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhh
Confidence 11 23333 467888887642 36677776654 6544
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.34 E-value=0.51 Score=50.23 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=120.4
Q ss_pred cCCCEEEEEe-C----CcEEEEEcCCCceeee--ecCCCCCeEEEEEecCCCcEEEEEeC----C-----CcEEEEEeec
Q 001224 834 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV 897 (1120)
Q Consensus 834 ~d~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~----d-----g~v~vwd~~~ 897 (1120)
-++..++.|+ + ..+.+||..+.+-... +....... +++. . ++++++.|+. + ..+.+||..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3556666665 2 4689999876543221 22111112 2222 2 6778887775 2 3688888876
Q ss_pred ce--eeEeecccccceEEEEEccCCCEEEEEeCC-----CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC
Q 001224 898 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 970 (1120)
Q Consensus 898 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg 970 (1120)
.+ .+..+......-.++.+ +++.++.|+.+ ..+.+||..+.+-.. +..... + ..-.+++.. ++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~--~--r~~~~~~~~-~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLT--R--RIGVGVAVL-NR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSS--C--CBSCEEEEE-TT
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE---CCCCCc--c--ccceEEEEE-CC
Confidence 54 22222222222222223 67777777754 358888887754221 111111 0 111222222 66
Q ss_pred cEEEEE-eC-----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceeeee
Q 001224 971 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus 971 ~~la~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~~~ 1039 (1120)
++++.| .+ ..+.+||..+.+-...-........-..+.+ ++++++.|+.+ ..+.+||+.+.+-...-
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 666664 32 4689999987765433221111112222233 77777878765 46999999887655321
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-----CcEEEEecCCCCCCCCCC
Q 001224 1040 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus 1040 ~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~~~~~~~ 1093 (1120)
. .+..... . +++.. ++.+++.|+.+ ..+.+||+.+.+ |...
T Consensus 248 ~----~p~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~ 293 (308)
T 1zgk_A 248 P----MKHRRSA---L--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEV 293 (308)
T ss_dssp C----CSSCCBS---C--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEE
T ss_pred C----CCCCccc---e--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE--Eeec
Confidence 1 2221101 1 23333 46788888755 357788887654 6543
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.27 E-value=0.41 Score=50.91 Aligned_cols=189 Identities=10% Similarity=0.050 Sum_probs=100.5
Q ss_pred cCCCEEEEEe-C----CcEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEeecce-
Q 001224 834 KNDSYVMSAS-G----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE- 899 (1120)
Q Consensus 834 ~d~~~l~~~s-d----g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~- 899 (1120)
-+++.++.|+ + ..+.+||..+.+-.. .+........++. - ++++++.|+.+ ..+.+||..+.+
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--A-EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--E-TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--E-CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 3666666665 3 568899988754322 2221112222222 2 67788888765 468899987754
Q ss_pred -eeEeecccccceEEEEEccCCCEEEEEeC---------CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC
Q 001224 900 -VKSKLKGHSKRITGLAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 969 (1120)
Q Consensus 900 -~~~~l~~h~~~V~~l~~s~d~~~l~s~s~---------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd 969 (1120)
.+..+......-.++. -++++++.|+. -..+.+||..+.+-. .+..... + ..-..++. -+
T Consensus 131 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~--~--r~~~~~~~-~~ 200 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT---ELCPMIE--A--RKNHGLVF-VK 200 (306)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE---EECCCSS--C--CBSCEEEE-ET
T ss_pred EeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE---ECCCccc--h--hhcceEEE-EC
Confidence 2222222111112222 26677777764 244788998875321 1211111 0 11122222 26
Q ss_pred CcEEEEE-eC-----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceee
Q 001224 970 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRC 1037 (1120)
Q Consensus 970 g~~la~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~ 1037 (1120)
+++++.| .+ ..+.+||..+.+-...-...........+.+ ++++++.|+.+ ..+.+||..+.+-..
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 6666663 22 4689999988754433221111122223333 77888888754 468999998876543
No 324
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=96.24 E-value=0.0035 Score=50.55 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.0
Q ss_pred CCcchHHHHHHHHHHHhhcChHHHHHHHHHhcCCCc
Q 001224 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF 36 (1120)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~ 36 (1120)
|+....||..||..||.|.||..||-+|++||++.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 778899999999999999999999999999999864
No 325
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.18 E-value=0.054 Score=58.63 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=79.3
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEe-----ec--eeeeccCCCCcccccccccCCCCceEEEEEcC-
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----RN--FKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 436 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp- 436 (1120)
+.|..+..||+|++|.+.| +.+|.|-.+..+..... .. .+.|.+.. .......+|..+.|+|
T Consensus 66 ~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl 135 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK 135 (452)
T ss_dssp CTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred CceeEEEECCCCCEEEEec--CCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence 4788999999999644443 36888888874432211 00 11122211 0112467899999999
Q ss_pred --CCCeEEEEECCCeEEEEEccCCceeee-------eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224 437 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 500 (1120)
Q Consensus 437 --dg~~las~~~dg~v~iwd~~~~~~~~~-------~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw 500 (1120)
.|..|++-..|+.|++||+........ .+.+......|.+++|..++-.+|+++....|.|+-.
T Consensus 136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 567899999999999999986331110 1112223356888889887776666666666666543
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.03 E-value=1.3 Score=47.97 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=59.8
Q ss_pred CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC---CCeE
Q 001224 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSLF 441 (1120)
Q Consensus 365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~l 441 (1120)
...+.|+|.|||++|+ ++...|.|.+++.. ++... .+ -++. .+..........|+|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~-V~e~~G~i~~~~~~-g~~~~--~~--~~~~--------~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGML-ITLRGGELRHWQAG-KGLSA--PL--SGVP--------DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEE-EEETTTEEEEEETT-TEECC--CC--BSCC--------CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEE-EEeCCceEEEEeCC-Cceee--Ee--cCCc--------ccccCCCCCceeEEECCCCCCCCEE
Confidence 4678999999998534 44567999999853 32110 00 0000 012223446789999996 5555
Q ss_pred EEEE-C-------CCeEEEEEccCC--ce--eeeee-eec---ccccCeEEEEEcCCCCceEEEEec
Q 001224 442 GVAY-S-------RHIVQIYSYHGG--DE--VRQHL-EID---AHVGGVNDIAFSHPNKQLCVITCG 492 (1120)
Q Consensus 442 as~~-~-------dg~v~iwd~~~~--~~--~~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~s 492 (1120)
..+. . ...|..|++..+ .. .+.+. .+. .....-..++|.|||. +|+.+|.
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd 149 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGE 149 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECC
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECC
Confidence 5442 2 235666666543 11 11111 111 0011235799999995 3444443
No 327
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.00 E-value=0.43 Score=51.40 Aligned_cols=185 Identities=11% Similarity=0.021 Sum_probs=93.2
Q ss_pred ceEEEEEcCCCCeEEEEE------------CCCeEEEEEccC--Cceeeeeeeecc-----cccCeEEEEEcC--CCCce
Q 001224 428 SVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHG--GDEVRQHLEIDA-----HVGGVNDIAFSH--PNKQL 486 (1120)
Q Consensus 428 ~V~~l~~spdg~~las~~------------~dg~v~iwd~~~--~~~~~~~~~l~~-----h~~~V~~v~~s~--d~~~~ 486 (1120)
..-.++..|+|..+++++ .+|.|.++|.++ ++.. .. .+.+ .......+.+.+ ++...
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-EL-EIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-EC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 345566788876655552 689999999984 3322 11 2333 234667777765 45421
Q ss_pred EEEEecC--CCcEEEEECCCCce----eEEeecc-ccCeEEEeeccCCCceEEEEEec---C--------------CeEE
Q 001224 487 CVITCGD--DKTIKVWDATNGAK----QYIFEGH-EAPVYSVCPHHKENIQFIFSTAL---D--------------GKIK 542 (1120)
Q Consensus 487 ~l~s~s~--d~~i~vwd~~~~~~----~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~---d--------------g~i~ 542 (1120)
++++-.. +.+|.+|++..+.. +.++.+. -...+.+.+. ++|.+.++... | |.|.
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 3333222 56788888765322 2333332 1335566653 34455555431 1 2232
Q ss_pred EEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCC-Ccee--EEE
Q 001224 543 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDS-VQLL--TSI 618 (1120)
Q Consensus 543 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~-~~~~--~~~ 618 (1120)
.+|. .+ ...+...- ..-+.++++||++.|+.+ +..+.|+.|++.. +... ..+
T Consensus 207 r~d~--~~-~~~~~~~l---------------------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~ 262 (355)
T 3sre_A 207 YYSP--ND-VRVVAEGF---------------------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL 262 (355)
T ss_dssp EECT--TC-CEEEEEEE---------------------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred EEEC--Ce-EEEeecCC---------------------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence 2222 11 11111111 123446666666666555 4578899999863 3321 222
Q ss_pred ecCCCCCCcCeEEEcC-CCCEEEEEE
Q 001224 619 DADGGLPASPRIRFNK-DGCLLAVST 643 (1120)
Q Consensus 619 ~~~~~~~~v~~~~~s~-~~~~l~~~~ 643 (1120)
... ...-.+++.+ +|++.+++.
T Consensus 263 ~~~---g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 263 SFD---TLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp ECS---SEEEEEEECTTTCCEEEEEE
T ss_pred eCC---CCCceEEEeCCCCcEEEEec
Confidence 211 2345577777 477666554
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.75 E-value=1.1 Score=47.44 Aligned_cols=187 Identities=11% Similarity=0.082 Sum_probs=97.8
Q ss_pred CCCEEEEEe-C-----CcEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeecce--
Q 001224 835 NDSYVMSAS-G-----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE-- 899 (1120)
Q Consensus 835 d~~~l~~~s-d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~-- 899 (1120)
+++.++.|+ + ..+.+||..+.+-.. .+........++ . - ++++++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA-V-L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-E-E-TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE-E-E-CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 666666665 3 358899987654322 222111122222 2 2 677888887654 47788876643
Q ss_pred eeEeecccccceEEEEEccCCCEEEEEeCC-------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224 900 VKSKLKGHSKRITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 972 (1120)
Q Consensus 900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~ 972 (1120)
.+..+......-.++. -+++.++.|+.+ ..+.+||+.+.+-. .+..... + ..-.+++ .-++++
T Consensus 138 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~--~--r~~~~~~-~~~~~i 207 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT---YIAEMST--R--RSGAGVG-VLNNLL 207 (302)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEE---EECCCSS--C--CBSCEEE-EETTEE
T ss_pred ecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE---ECCCCcc--c--cccccEE-EECCEE
Confidence 2322322222222222 266777777653 34888998775321 1111111 1 1112222 235666
Q ss_pred EEEE-eC-----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC-----cEEEEEcCCccee
Q 001224 973 FLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR 1036 (1120)
Q Consensus 973 la~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-----~v~iwd~~~~~~~ 1036 (1120)
++.| .+ ..+.+||..+.+-...-........-..+. -++++++.|+.++ .|.+||..+.+-.
T Consensus 208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 6664 33 469999998875443221111111112222 3778888887654 4899999887654
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.051 Score=58.07 Aligned_cols=199 Identities=7% Similarity=0.024 Sum_probs=108.9
Q ss_pred cEEEEEeCCCcEEEEEeecceeeEeeccc-ccceEEEEE---ccCCCEEEEE-eCCCCEEEEECCCcccccceeeeccCC
Q 001224 879 NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAF---SHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTG 953 (1120)
Q Consensus 879 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~~---s~d~~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~~~~ 953 (1120)
.++++++.||.|+-+|..+|+.+..+... ..++....- ..++..++.. +.||.|..++..+|.......+...-.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999988887654 122222110 0123334333 589999999988875432211111111
Q ss_pred CCCCCCCCcEEEE------------ccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCC-----eeEEEEC-----C
Q 001224 954 RTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS-----C 1011 (1120)
Q Consensus 954 ~~~~~~~i~~~~f------------spdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~-----v~~l~~s-----~ 1011 (1120)
...+.. +.+|..++.+.++.+...|+.+|+.+..+....-... ..|.... .
T Consensus 91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 011221 1344444447999999999999999988764321111 1111111 1
Q ss_pred CCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 001224 1012 DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1090 (1120)
Q Consensus 1012 dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1090 (1120)
.+..|+.+..+..+.+.+ .+|+ +..+....+.+... ...+. .....+. |+.+ +.++.||.|...|..+|+..|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 245677788788888777 5564 33332222211110 00000 0000111 3455 557889999999999888888
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.72 E-value=0.96 Score=48.23 Aligned_cols=193 Identities=13% Similarity=0.102 Sum_probs=98.4
Q ss_pred EEccCCCEEEEEe-----CC-------cEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCC--------C
Q 001224 831 ALSKNDSYVMSAS-----GG-------KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD--------S 888 (1120)
Q Consensus 831 ~~s~d~~~l~~~s-----dg-------~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d--------g 888 (1120)
+...+++.++.|+ ++ .+.+||..+.+-.. .+....... +++.. ++++++.|+.+ .
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGEA--LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEEE--CCEEEEEeCCcCCCCCcccc
Confidence 3345677777665 11 27788887654321 122111111 22222 66777877743 3
Q ss_pred cEEEEEeecce--eeEeecccccceEEEEEccCCCEEEEEeC-C-----CCEEEEECCCcccccceeeeccCCCCCCCCC
Q 001224 889 SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 960 (1120)
Q Consensus 889 ~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1120)
.+.+||..+.+ .+..+......-.++. -+++.++.|+. + ..+.+||..+.+-.. +.... .+ ..
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p--~~--r~ 188 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAPMQ--TA--RS 188 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE---CCCCS--SC--CB
T ss_pred eEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE---CCCCC--Cc--hh
Confidence 58899987653 3333322221112222 36677777776 2 358889988753221 11111 11 11
Q ss_pred CcEEEEccCCcEEEEE-eCC-----eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC-----------
Q 001224 961 DTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------- 1023 (1120)
Q Consensus 961 i~~~~fspdg~~la~~-~d~-----~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg----------- 1023 (1120)
-..++ .-++++++.| .++ .+.+||..+.+-...-...........+. -++++++.|+.++
T Consensus 189 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~ 265 (315)
T 4asc_A 189 LFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPT 265 (315)
T ss_dssp SCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEE
T ss_pred ceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCcccccc
Confidence 12222 2366666664 332 58899998875443322111111122222 2677777777642
Q ss_pred ---cEEEEEcCCcceeee
Q 001224 1024 ---TVCVFSAANLKLRCR 1038 (1120)
Q Consensus 1024 ---~v~iwd~~~~~~~~~ 1038 (1120)
.|.+||..+.+-...
T Consensus 266 ~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 266 ELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEEETTTTEEEEE
T ss_pred ccCcEEEecCCCChhhhh
Confidence 478889888765544
No 331
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.62 E-value=0.0084 Score=47.97 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc--HHHHHHHHhccCHHHHHHHhccc
Q 001224 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSGF 60 (1120)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~~~~~ 60 (1120)
++|+.+-|++||..+||.+++.+|.+|.|+..+ ...-.+-+|+-.|..++++-.++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI 67 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 67 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence 578999999999999999999999999998875 22234557788887776665554
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.60 E-value=3.1 Score=44.54 Aligned_cols=100 Identities=11% Similarity=0.117 Sum_probs=59.8
Q ss_pred CccEEEEccCCCEEEEEe--CCcEEEEEcCCCce------------------eeeecCCCCCeEEEEEecCCCcEEEEEe
Q 001224 826 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT------------------MATFMPPPPAATFLAFHPQDNNIIAIGM 885 (1120)
Q Consensus 826 ~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~------------------~~~~~~~~~~i~~l~~sp~d~~~lasg~ 885 (1120)
....++|+|+|.+.++-. ++.=.|--+..+.. +..+..+......++|. ++.++....
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeeccc
Confidence 356799999887666543 33222222222111 12222222356788887 466777667
Q ss_pred CCCcEEEEEeeccee----eEeecccccceEEEEEccCCCEEEEEe
Q 001224 886 DDSSIQIYNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSG 927 (1120)
Q Consensus 886 ~dg~v~vwd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s 927 (1120)
..+.|....+..... ...+.+....+..|+..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 777787777765432 223455557899999999998776644
No 333
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=95.53 E-value=0.022 Score=52.94 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=58.1
Q ss_pred CcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccCCC
Q 001224 65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD 135 (1120)
Q Consensus 65 ~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~ 135 (1120)
..++.+ ++|+|+.|.||||+..|+..+|..|+.+.-.-+.....+.++.|+.+....++.+++....+..
T Consensus 46 k~EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~ 115 (156)
T 2nxp_A 46 RAELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRT 115 (156)
T ss_dssp HHHHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCG
T ss_pred HHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHh
Confidence 346666 9999999999999999999999999997766666667899999999988888877676666644
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.53 E-value=0.66 Score=50.59 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=48.3
Q ss_pred CCCEEEEEe--CCcEEEEEcCC----Cceeeeec-CCCCCeEEEEEecCCCcEEEEEeC-C---------CcEEEEEeec
Q 001224 835 NDSYVMSAS--GGKISLFNMMT----FKTMATFM-PPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVRV 897 (1120)
Q Consensus 835 d~~~l~~~s--dg~i~vwd~~~----~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~-d---------g~v~vwd~~~ 897 (1120)
+++.++.|+ ...+.++|..+ +..+..+. ...... +++. - ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-I-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-E-TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-E-CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 666667776 46799999863 22222222 111122 2222 2 6778887776 2 3688899876
Q ss_pred ce--eeEeecccccceEEEEEccCCCEEEEEeCC
Q 001224 898 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD 929 (1120)
Q Consensus 898 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 929 (1120)
.+ .+..+. ........+...++++++.|+.+
T Consensus 96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred CcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence 53 222222 01111111222577888888865
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.36 E-value=2.9 Score=44.44 Aligned_cols=222 Identities=12% Similarity=0.086 Sum_probs=111.2
Q ss_pred CcEEEEEcCCCceee-eecCCCCCeEEEEEecCCCcEEEEEeC----CC-------cEEEEEeecce--eeEeecccccc
Q 001224 845 GKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDE--VKSKLKGHSKR 910 (1120)
Q Consensus 845 g~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~----dg-------~v~vwd~~~~~--~~~~l~~h~~~ 910 (1120)
..+..||..+.+-.. .+..........+... ++.+++.|+. ++ .+.+||..+.+ .+..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 348889988765433 1221122222333344 7788888873 12 17778876643 22222221111
Q ss_pred eEEEEEccCCCEEEEEeCC-------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e-C---
Q 001224 911 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E--- 978 (1120)
Q Consensus 911 V~~l~~s~d~~~l~s~s~D-------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~-d--- 978 (1120)
-..+.+ +++.++.|+.+ ..+.+||..+.+-. .+...... ..-.+++. .++++++.| . +
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~----r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS---EVKNLPIK----VYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE---EECCCSSC----EESCEEEE-ETTEEEEECCEESSSC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEe---ECCCCCCc----ccccEEEE-ECCEEEEEcCCCCCCC
Confidence 222222 66777777764 24777888764321 11111110 01122222 566666664 2 2
Q ss_pred --CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceeeeeCCCcccCCCCCC
Q 001224 979 --TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSS 1051 (1120)
Q Consensus 979 --~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~~~~~~~~~~~g~~~ 1051 (1120)
..+.+||..+.+-...-.... ...-.+++. -++++++.|+.+ ..+.+||..+.+-...-. .|.....
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~ 246 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE----FPQERSS 246 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC----CSSCCBS
T ss_pred ccceEEEEcCCCCEEEECCCCCC-CcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC----CCCcccc
Confidence 358999998876443321111 111122222 267777777654 357889988876543211 2222111
Q ss_pred CCccceEEEecCCCCCEEEEEeCC--------------CcEEEEecCCCCCCCCC
Q 001224 1052 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESEGKWGV 1092 (1120)
Q Consensus 1052 ~~v~~~~i~~~p~d~~~l~s~~~D--------------g~v~vW~~~~~~~~~~~ 1092 (1120)
. +++.. ++.+++.|+.+ ..+.++|+.+.+ |..
T Consensus 247 ~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~ 292 (318)
T 2woz_A 247 I-----SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAG 292 (318)
T ss_dssp C-----EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEE
T ss_pred e-----EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehh
Confidence 1 23333 46788887764 357778877654 554
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.29 E-value=1 Score=47.84 Aligned_cols=187 Identities=10% Similarity=0.066 Sum_probs=97.4
Q ss_pred CCCEEEEEeC----------CcEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEeec
Q 001224 835 NDSYVMSASG----------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 897 (1120)
Q Consensus 835 d~~~l~~~sd----------g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~ 897 (1120)
+++.++.|+. ..+.+||..+.+-.. .+........++.+ ++++++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence 5666665542 458899987654322 22211122222222 67788877644 3688888876
Q ss_pred ce--eeEeecccccceEEEEEccCCCEEEEEeCC-----CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC
Q 001224 898 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 970 (1120)
Q Consensus 898 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg 970 (1120)
.+ .+..+......-.++.+ ++++++.|+.+ ..+.+||+.+.+-.. +..... + ..-.+++.. ++
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~--~--r~~~~~~~~-~~ 216 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNT--I--RSGAGVCVL-HN 216 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE---CCCCSS--C--CBSCEEEEE-TT
T ss_pred CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee---CCCCCC--c--cccceEEEE-CC
Confidence 53 22222222222222233 67777777765 458889987754221 111111 1 111223222 66
Q ss_pred cEEEEE-eC-----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCccee
Q 001224 971 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1036 (1120)
Q Consensus 971 ~~la~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~ 1036 (1120)
++++.| .+ ..+.+||+.+.+-...-...........+. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 666664 32 569999998876543322111111122222 267777877754 35788888877654
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.21 E-value=1.4 Score=47.90 Aligned_cols=59 Identities=10% Similarity=-0.071 Sum_probs=31.5
Q ss_pred eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC------cEEEEEcCCcceeeeeC
Q 001224 980 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus 980 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg------~v~iwd~~~~~~~~~~~ 1040 (1120)
.+.+||+.+.+-...-........-. +...++++++.|+.++ .|.++++++++.+....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 57789988765333211111111112 2334788888888653 46667898888886655
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.00 E-value=2.1 Score=45.57 Aligned_cols=193 Identities=9% Similarity=0.024 Sum_probs=96.8
Q ss_pred EEccCCCEEEEEe-C----C-------cEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCC-------Cc
Q 001224 831 ALSKNDSYVMSAS-G----G-------KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-------SS 889 (1120)
Q Consensus 831 ~~s~d~~~l~~~s-d----g-------~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d-------g~ 889 (1120)
+...+++.++.|+ . + .+.+||..+.+-.. .+....... +++.. ++++++.|+.+ ..
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV--DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE--CCEEEEEcCccCCCCcccce
Confidence 3445677777765 1 1 16778877654322 222111122 22222 56788888754 24
Q ss_pred EEEEEeecce--eeEeecccccceEEEEEccCCCEEEEEeCC------CCEEEEECCCcccccceeeeccCCCCCCCCCC
Q 001224 890 IQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 961 (1120)
Q Consensus 890 v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i 961 (1120)
+.+||..+.+ .+..+......-.++. .++++++.|+.+ ..+.+||..+.+-. .+.... .+ ..-
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~p--~~--r~~ 199 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK---DLAPMK--TP--RSM 199 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEE---EECCCS--SC--CBS
T ss_pred EEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE---ECCCCC--CC--ccc
Confidence 7788877643 2222221111111222 467777777642 35889998875421 111111 11 111
Q ss_pred cEEEEccCCcEEEEE-eC-----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-------------
Q 001224 962 TRVQFHQDQIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------------- 1022 (1120)
Q Consensus 962 ~~~~fspdg~~la~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D------------- 1022 (1120)
..++. -+++.++.| .+ ..+.+||..+.+-...-........- +++ .-++++++.|+.+
T Consensus 200 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~ 276 (318)
T 2woz_A 200 FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTE 276 (318)
T ss_dssp CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCB
T ss_pred ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccce
Confidence 23332 356666664 22 35789998877544322111111111 222 2367777777754
Q ss_pred -CcEEEEEcCCcceeee
Q 001224 1023 -ATVCVFSAANLKLRCR 1038 (1120)
Q Consensus 1023 -g~v~iwd~~~~~~~~~ 1038 (1120)
..+.+||..+.+-...
T Consensus 277 ~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 277 VNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCEEEEETTTTEEEEE
T ss_pred eeeEEEEeCCCCEehhh
Confidence 3588889888766544
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.99 E-value=0.18 Score=49.26 Aligned_cols=146 Identities=13% Similarity=0.021 Sum_probs=83.2
Q ss_pred CCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCC--------eEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224 825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA--------ATFLAFHPQDNNIIAIGMDDSSIQIYNVR 896 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~--------i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 896 (1120)
..++.++|+|+|.+.++ .+|.++-.+..+.....-+. .... -.++.|.| ++.+.++ .||.|+-++..
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 36779999999998777 88887777664422211111 0112 37899999 8888777 56988877753
Q ss_pred cceee------Eee-cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccce--eeeccCCCCCCCCCCcEEEEc
Q 001224 897 VDEVK------SKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGRTPTAQSDTRVQFH 967 (1120)
Q Consensus 897 ~~~~~------~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~fs 967 (1120)
+...- ..+ .+-=..+..|.|.|+|.+.+.. |+.+.-+...++...... ....-.+.. ..-+.+.|.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~---~~yr~l~f~ 190 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW---DTFKFLFFS 190 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG---GGEEEEEEC
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc---ceEEEEEEC
Confidence 31110 011 1111467899999999887766 776543332221110000 000000000 123456799
Q ss_pred cCCcEEEEEeCCeE
Q 001224 968 QDQIHFLVVHETQL 981 (1120)
Q Consensus 968 pdg~~la~~~d~~v 981 (1120)
++|.+.++. ++.+
T Consensus 191 ~~G~l~~v~-~g~~ 203 (236)
T 1tl2_A 191 SVGTLFGVQ-GGKF 203 (236)
T ss_dssp TTSCEEEEE-TTEE
T ss_pred CCCcEEEEe-CCeE
Confidence 999888877 6643
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.24 Score=52.91 Aligned_cols=114 Identities=11% Similarity=0.106 Sum_probs=67.5
Q ss_pred EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCC--CcccccccccCCCCceEEEEEcCCCCeEEEE-ECCCeEEEEEc
Q 001224 379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC--SMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSY 455 (1120)
Q Consensus 379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~dg~v~iwd~ 455 (1120)
+++.++.||.|.-.|.++|+.+-+ .... ..... ..+... ..++..++.. +.||.|..++.
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~-------~~~~~~~p~~~---~~~~~~-------~~~~~~~vv~p~~dG~l~a~~~ 74 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWS-------IEPENFQPLIE---IQEPSR-------LETYETLIIEPFGDGNIYYFNA 74 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEE-------ECGGGSCCSEE---CCCSCT-------TTSSEEEEECCSTTTEEEEEET
T ss_pred EEEEEeCCCeEEEEECCCCcEEEE-------ecCCccCCcEE---ecCCcc-------ccCCcEEEEEECCCCEEEEEEC
Confidence 689999999999999999997654 2211 00000 001110 0133333333 57899999998
Q ss_pred cCCceeeeeeeecc--cccCeEE---EEE------cCCCCceEEEEecCCCcEEEEECCCCceeEEeec
Q 001224 456 HGGDEVRQHLEIDA--HVGGVND---IAF------SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 513 (1120)
Q Consensus 456 ~~~~~~~~~~~l~~--h~~~V~~---v~~------s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 513 (1120)
.+|..... ..+.. ...++.. ... +.++ .+++|+.++.+...|+.+|+.+..+..
T Consensus 75 ~~G~~~~~-~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g---~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 75 HQGLQKLP-LSIRQLVSTSPLHLKTNIVVNDSGKIVEDE---KVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTEEEEEE-EEHHHHHTTCSEEEECC----------CCE---EEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred CCCcEEee-eccccceeccccccCCCceeecccccccCC---EEEEEecCCEEEEEECCCCcEEEEEec
Confidence 87753321 12111 1112221 000 1233 589999999999999999999998863
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.92 E-value=0.08 Score=51.67 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=82.5
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc--------eEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224 867 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFSHALNVLVSSGADSQLCVWSSD 938 (1120)
Q Consensus 867 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~--------V~~l~~s~d~~~l~s~s~Dg~v~iWd~~ 938 (1120)
.+..++|+| ++.+.++ .+|.++-.+..+.+. ..+.+-... -.++.|.++|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 577999999 8987777 677766666544211 111111112 368999999988887 56888777653
Q ss_pred Cccccccee--eeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeec-----cccCCCCCCeeEEEECC
Q 001224 939 GWEKQKNRF--LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ-----WVPRESSAPITHATFSC 1011 (1120)
Q Consensus 939 ~~~~~~~~~--~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~-----~~~~~h~~~v~~l~~s~ 1011 (1120)
+.......- ...-.+. -..+..+.|.|+|.+.++. |+.+.-....+.....- ......-..-..+.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~g---w~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGG---WSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSS---GGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCC---CCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 322211100 0000100 0256899999999999998 88864433332211100 01111122344566888
Q ss_pred CCcEEEEEEcCCc
Q 001224 1012 DSQLVYACFLDAT 1024 (1120)
Q Consensus 1012 dg~~l~s~~~Dg~ 1024 (1120)
+|.+.++. +|.
T Consensus 192 ~G~l~~v~--~g~ 202 (236)
T 1tl2_A 192 VGTLFGVQ--GGK 202 (236)
T ss_dssp TSCEEEEE--TTE
T ss_pred CCcEEEEe--CCe
Confidence 88776655 663
No 342
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=94.92 E-value=0.016 Score=52.46 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=53.7
Q ss_pred cccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC
Q 001224 66 NRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY 133 (1120)
Q Consensus 66 ~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 133 (1120)
.++.+ ++|+|+.|.||||+..|..++|..|+.+.-.-+... .+.++.|+.+....++.+++....+
T Consensus 28 ~EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~f 93 (138)
T 2j4b_A 28 NDLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTF 93 (138)
T ss_dssp HHHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHH
Confidence 36666 999999999999999999999999999776666666 8889999988888877766655444
No 343
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=94.66 E-value=0.014 Score=53.41 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=52.2
Q ss_pred CcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC
Q 001224 65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY 133 (1120)
Q Consensus 65 ~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 133 (1120)
..++.+ ++|+|+.|.||||+..| .++|..|+.+.-.-+...+.+.++.|+.+....++.+++....+
T Consensus 29 k~EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~f 95 (148)
T 2j49_A 29 KPELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAF 95 (148)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHH
Confidence 446667 99999999999999999 99999999976655555466778888887777777666555444
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.66 E-value=3.4 Score=43.41 Aligned_cols=175 Identities=11% Similarity=0.066 Sum_probs=97.1
Q ss_pred EccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC--------------CcEEEEE
Q 001224 832 LSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYN 894 (1120)
Q Consensus 832 ~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d--------------g~v~vwd 894 (1120)
|+.++.+|.... ++.|...+..... ...+.. -.+--+++ ++.+|+..... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 345777777664 4667777765433 333331 22445678 66777666543 3566666
Q ss_pred eecceeeEeecccccceEEEEEccCCCEEEEEe--CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224 895 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 972 (1120)
Q Consensus 895 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~ 972 (1120)
+..++. ..+... .+..|++++++|+-.. .++.-.||.+........++... .+ .+|+++|+.
T Consensus 95 ~dg~~~-~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~---------~~--~~~~~~g~~ 158 (302)
T 3s25_A 95 RNGHGS-TVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH---------YL--FTCNTSDRY 158 (302)
T ss_dssp TTSCCC-EEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS---------CC--CCSEEETTE
T ss_pred CCCCcc-eEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC---------Cc--eEeeEECCE
Confidence 555432 223221 1236788999988765 34545555444322212222211 11 346889998
Q ss_pred EEEEe--CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC--cEEEEEcCCcc
Q 001224 973 FLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--TVCVFSAANLK 1034 (1120)
Q Consensus 973 la~~~--d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg--~v~iwd~~~~~ 1034 (1120)
|.-.. ...|.+-++..+.....+. +... ..+.|++++|+-...++ .|..-+++...
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred EEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 88764 4578888877665543322 1222 34669999988766443 46555666554
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.39 E-value=6.4 Score=42.01 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=65.3
Q ss_pred CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC---CC
Q 001224 363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 439 (1120)
Q Consensus 363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~ 439 (1120)
.-...+.|+|.|||+ ++++-...|.|++++..+++......+ ..+..........|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence 346788999999998 566655589999998766553211000 0022334567899999995 44
Q ss_pred eEEEE-E--CCCeEEEEEccCCc----e---eeeee-eec-ccccCeEEEEEcCCCCceEEEEe
Q 001224 440 LFGVA-Y--SRHIVQIYSYHGGD----E---VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC 491 (1120)
Q Consensus 440 ~las~-~--~dg~v~iwd~~~~~----~---~~~~~-~l~-~h~~~V~~v~~s~d~~~~~l~s~ 491 (1120)
+|... + .++.|.-|.+..+. . .+.+. .+. +....-..|+|.|||. ++++.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~ 157 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGT 157 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEE
Confidence 44443 2 34556667665521 1 11111 121 1112346799999997 44543
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.27 E-value=1.4 Score=55.31 Aligned_cols=212 Identities=9% Similarity=0.097 Sum_probs=122.6
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCe
Q 001224 370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 449 (1120)
Q Consensus 370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~ 449 (1120)
.-.+|..+ ++|.=. ..++.|+|+++...+....+ ..+|.-=.|-.+. .|+..+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~~a 126 (1630)
T 1xi4_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA 126 (1630)
T ss_pred hccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCC-eeEEEc-CCe
Confidence 33566666 455433 57899999998876654221 2345555554433 344333 456
Q ss_pred EEEEEccCCceeeeeeeeccc----ccCeEEEEEcCCCCceEEEEec------CCCcEEEEECCCCceeEEeeccccCeE
Q 001224 450 VQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPVY 519 (1120)
Q Consensus 450 v~iwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~d~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~h~~~v~ 519 (1120)
|.-|++.+..... ..+..| ...|..-.-+++.+. ++++|- -.|.+.+|..+.+ .-+.+.||.+...
T Consensus 127 VyHW~~~~~s~P~--k~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (1630)
T ss_pred EEEeccCCCCccH--HHHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhh
Confidence 9999997533221 123333 346777788888886 333332 4578888986544 3456677776655
Q ss_pred EEeeccCCCceEEEE-Eec---CCeEEEEecCCC-CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224 520 SVCPHHKENIQFIFS-TAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 594 (1120)
Q Consensus 520 ~~~~~~~~~~~~l~s-~~~---dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~ 594 (1120)
.+.....+....|++ +.. .+.+++-++... .... .-......+.|.|+.. ......+..++.-..
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk~~~~~~~~~~~-------~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHDV 272 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccccccccCCcccc-------cCcceEEEeccccCE
Confidence 444322222122332 221 268888888653 1111 1112234455555432 123345666777778
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEe
Q 001224 595 FLAAGDDFSIKFWDMDSVQLLTSID 619 (1120)
Q Consensus 595 l~~~~~dg~i~iwd~~~~~~~~~~~ 619 (1120)
+...+.-|.|.++|+.|+.++..-.
T Consensus 273 iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 273 VFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEEEecCceEEEEecccchhhhhcc
Confidence 8889999999999999998876554
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.20 E-value=9.1 Score=43.00 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=71.6
Q ss_pred CCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCce-------------eeeecCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001224 824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDS 888 (1120)
Q Consensus 824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg 888 (1120)
......+.++|||+++++++ +.++.++|+..... ..... -.-.....+|.+ +|....+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34455789999999999988 78999999874211 11222 234578899999 786666777999
Q ss_pred cEEEEEeecc----------eeeEeecccccceEEEEE------ccCCCEEEEEeC
Q 001224 889 SIQIYNVRVD----------EVKSKLKGHSKRITGLAF------SHALNVLVSSGA 928 (1120)
Q Consensus 889 ~v~vwd~~~~----------~~~~~l~~h~~~V~~l~~------s~d~~~l~s~s~ 928 (1120)
.|.-|++... ..+..+.-|-.+ -.+.- .+||++|++...
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence 9999999764 455666655443 22332 478999998753
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.01 E-value=3.9 Score=45.97 Aligned_cols=110 Identities=10% Similarity=0.085 Sum_probs=62.0
Q ss_pred cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC--CCCCCCcEEEEccC---CcEEEEE--e----
Q 001224 909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQD---QIHFLVV--H---- 977 (1120)
Q Consensus 909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~fspd---g~~la~~--~---- 977 (1120)
...++|+|.|||+++++-...+.|++++..++... .......... ........++|+|| +.+|.++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 45679999999998877554456888876544321 1222221110 11245678999995 5555442 2
Q ss_pred --------CCeEEEEEcCCc-------eeee-ccccCCCCCCeeEEEECCCCcEEEEEEc
Q 001224 978 --------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus 978 --------d~~v~i~d~~~~-------~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
...|.-|+...+ +.+. .+. .........|+|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence 235555655322 1111 121 121234789999999997776553
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.59 E-value=12 Score=42.16 Aligned_cols=195 Identities=13% Similarity=0.146 Sum_probs=112.0
Q ss_pred cCCCEEEEEe--CCcEEEEEcCCCceeeeecC-CCCCeEEEEEe--cCCCcEEEEEeC-------CCcE---------EE
Q 001224 834 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI 892 (1120)
Q Consensus 834 ~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s--p~d~~~lasg~~-------dg~v---------~v 892 (1120)
.||+|+.... +.+|...+++..++-+.+.- ....+..+.|- | +..|++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4889999987 57788899988887655432 34567888886 5 6667776663 3321 11
Q ss_pred EEe---ecceeeEeecccccceEEEEEccCCCEEEEEeCCC---------------CEEEEECCC-------cccccce-
Q 001224 893 YNV---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDG-------WEKQKNR- 946 (1120)
Q Consensus 893 wd~---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---------------~v~iWd~~~-------~~~~~~~- 946 (1120)
|.. .+.+....+.- .+..-.+...++|++.++.+... -+.++++.. |+.....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 111 11111111100 11222344566777777665532 244555332 1110000
Q ss_pred -eeeccCCCC------------CCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCcee-------------eeccccC
Q 001224 947 -FLQIPTGRT------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR 998 (1120)
Q Consensus 947 -~~~~~~~~~------------~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~-------------~~~~~~~ 998 (1120)
-....++.. +...+...+.++|||++++++ .+.++.++|..+... .....
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 001111111 111345788999999999995 567899999885321 11221
Q ss_pred CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCc
Q 001224 999 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus 999 ~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
-.......+|.++|.-..+-..|..|.-|++...
T Consensus 376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred -CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 1456788999999955555568999999999764
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.40 E-value=3.8 Score=49.06 Aligned_cols=197 Identities=10% Similarity=0.068 Sum_probs=105.0
Q ss_pred cCCCEEEEEe-C----CcEEEEEcCCCceeeee--------cCCCCCeEEEEEecCCCcEEEEEeCCC------cEEEEE
Q 001224 834 KNDSYVMSAS-G----GKISLFNMMTFKTMATF--------MPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN 894 (1120)
Q Consensus 834 ~d~~~l~~~s-d----g~i~vwd~~~~~~~~~~--------~~~~~~i~~l~~sp~d~~~lasg~~dg------~v~vwd 894 (1120)
.++..++.|+ + ..+.+||..+.+-...- ......-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5666777765 3 35889998765433222 11112233444433 567788887543 578888
Q ss_pred eecc--eeeEeecccccceEEEEEccCCCEEEEEeCCC--CEEEEECCCcccccceeeeccCCCCC-CCCCCcEEEEccC
Q 001224 895 VRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTP-TAQSDTRVQFHQD 969 (1120)
Q Consensus 895 ~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~fspd 969 (1120)
..+. +.+..+......- +++...+++.++.||.++ .+.+||..+..-. .+.. .+..+ ....-..+++..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~---~~~~-~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK---DVTP-KDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEE---ECCC-SSGGGGSCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceE---EccC-CCCCCCcccceeEEEEeCC
Confidence 8774 3333332211111 222223788888888765 6889998875421 1111 00000 0012234566665
Q ss_pred -CcEEEEE-e--C-----CeEEEEEcCCce------eeeccccCCCCCCeeEEEECCCCcEEEEEEcC--------CcEE
Q 001224 970 -QIHFLVV-H--E-----TQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVC 1026 (1120)
Q Consensus 970 -g~~la~~-~--d-----~~v~i~d~~~~~------~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--------g~v~ 1026 (1120)
++.++.| . + ..+.+||+.+.. .............-.+++...++++++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 6666664 3 2 358899998876 11111100011111233333347888888743 4599
Q ss_pred EEEcCCccee
Q 001224 1027 VFSAANLKLR 1036 (1120)
Q Consensus 1027 iwd~~~~~~~ 1036 (1120)
+||..+.+-.
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999988765
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.08 E-value=16 Score=39.92 Aligned_cols=261 Identities=10% Similarity=0.053 Sum_probs=119.0
Q ss_pred CCCccEEEEcc--CCCEEEEEeCC----cEEEEEc--CCCceeee---ecC--------CCCCeEEEEEecCC-CcEEEE
Q 001224 824 EEAVPCFALSK--NDSYVMSASGG----KISLFNM--MTFKTMAT---FMP--------PPPAATFLAFHPQD-NNIIAI 883 (1120)
Q Consensus 824 ~~~v~~l~~s~--d~~~l~~~sdg----~i~vwd~--~~~~~~~~---~~~--------~~~~i~~l~~sp~d-~~~las 883 (1120)
...|.+|++.| .+...+.+..| .|...+- .+++.+.. +.. ....|.+++++|.+ ...|.+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 45688999998 55555555454 3443321 12222211 111 11247789998743 445555
Q ss_pred EeCCCcEEEEEee--cceeeEeecc----------------cccceEEEEEccC-CCEEEEEeCCCCEEEEECCCccccc
Q 001224 884 GMDDSSIQIYNVR--VDEVKSKLKG----------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQK 944 (1120)
Q Consensus 884 g~~dg~v~vwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~ 944 (1120)
++..+.|...+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+ +.++ .
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~-t- 210 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT-D- 210 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS-S-
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC-C-
Confidence 6556655544211 1222211111 1235788999873 34444444444343332 2221 1
Q ss_pred ceeeec-cCC-CCC-----CCCCCcEEEEccC-CcEEEEEeCCeEEEEEcCCceeeeccccCCCC---CCeeEEEECC-C
Q 001224 945 NRFLQI-PTG-RTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVPRESS---APITHATFSC-D 1012 (1120)
Q Consensus 945 ~~~~~~-~~~-~~~-----~~~~i~~~~fspd-g~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~---~~v~~l~~s~-d 1012 (1120)
...... ... ..+ ....+..+++.|+ ...|.++..+.|...+-. ++....+...... ..+.++++.| +
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCCC
Confidence 111111 000 000 0124678899986 355666656666555422 2222222210001 3467788876 3
Q ss_pred CcEEEEEEc-----------CCcEEEEEcCC-cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEE
Q 001224 1013 SQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1080 (1120)
Q Consensus 1013 g~~l~s~~~-----------Dg~v~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~v 1080 (1120)
...|.++.. ++...||.... |+.-..+. .-+|....-..+....++++|.++..|+.++.++.|
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l-- 365 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI-- 365 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE--
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE--
Confidence 344444432 33345665544 33333332 112321100011112578888666667777766654
Q ss_pred EecCCCCCCCCC
Q 001224 1081 FEPLESEGKWGV 1092 (1120)
Q Consensus 1081 W~~~~~~~~~~~ 1092 (1120)
|.-..+..+|..
T Consensus 366 ~~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 WASADEGEHWQC 377 (394)
T ss_dssp EEESSTTSBCEE
T ss_pred EEECCCCCCceE
Confidence 444454456654
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=91.47 E-value=15 Score=38.36 Aligned_cols=111 Identities=9% Similarity=0.105 Sum_probs=66.1
Q ss_pred EEEEecCCCeEEEEEeCC-------------CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224 369 SMDFHPVQQTLLLVGTNV-------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 435 (1120)
Q Consensus 369 ~v~~spdg~~lla~g~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 435 (1120)
+--++++|++|..+...+ ..|+..++..++... +... .+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~----~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD----PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS----CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC----CccEEE
Confidence 456789999977777654 356666766654322 1111 123788
Q ss_pred CCCCeEEEEE--CCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe
Q 001224 436 PDGSLFGVAY--SRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 511 (1120)
Q Consensus 436 pdg~~las~~--~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 511 (1120)
+++++|+-.. .++ .|..-++++.. .+ .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 344 45555665433 22 2333322 467888986 3334445678888887766544433
Q ss_pred e
Q 001224 512 E 512 (1120)
Q Consensus 512 ~ 512 (1120)
.
T Consensus 184 ~ 184 (302)
T 3s25_A 184 D 184 (302)
T ss_dssp C
T ss_pred C
Confidence 3
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.14 E-value=11 Score=38.99 Aligned_cols=224 Identities=13% Similarity=0.062 Sum_probs=115.3
Q ss_pred CCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee
Q 001224 825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 904 (1120)
Q Consensus 825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 904 (1120)
..|..++.... ..++.. ||.|+.|-....-.+..-......|..++... ...++. . ||.|+.|-......+..-
T Consensus 24 ~~i~~ia~G~~-h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECSS-EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCCC-eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 35667776543 233333 88899997654322221111223577777653 344554 4 999999986542211111
Q ss_pred cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEE
Q 001224 905 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 984 (1120)
Q Consensus 905 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~ 984 (1120)
..-...|..++...+. .+.-. ||.|..|-......... ... ....|..++...+...+ .. |+.|..|
T Consensus 98 ~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~-~~~-------~~~~i~~i~~G~~~~~~-l~-~G~v~~w 164 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTV-PAE-------AQSGVTALDGGVYTALA-VK-NGGVIAW 164 (282)
T ss_dssp GGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSC-CGG-------GGSSEEEEEECSSEEEE-EE-TTEEEEE
T ss_pred cccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCC-Ccc-------CCCCeEEEEcccCEEEE-EE-CCEEEEe
Confidence 1112467777776443 33334 89999997655322110 000 01235555544333222 23 7889888
Q ss_pred EcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCC
Q 001224 985 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1064 (1120)
Q Consensus 985 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~ 1064 (1120)
-......+.... .-...|..|+-..+.. ++. .||.|+.|-....-.+. .|.. ....+. .++.-.
T Consensus 165 G~n~~gqlg~p~--~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~- 228 (282)
T 3qhy_B 165 GDNYFGQTTVPA--EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE- 228 (282)
T ss_dssp ECCTTSTTSCCG--GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS-
T ss_pred cCCCCCCCCCce--ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC-
Confidence 765433322111 1134677777644333 333 59999999765432221 1100 011133 555443
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 001224 1065 EPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus 1065 d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
...++.. ||.|+.|--...
T Consensus 229 -~h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 229 -WYSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp -SCEEEEE--TTEEEEESTTCC
T ss_pred -CEEEEEE--CCEEEEecCCCC
Confidence 2344444 999999986653
No 354
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=89.91 E-value=23 Score=37.85 Aligned_cols=165 Identities=12% Similarity=0.156 Sum_probs=91.6
Q ss_pred CCCceEEEEecCCCeEEEEEe-------------CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224 364 GSSPMSMDFHPVQQTLLLVGT-------------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 430 (1120)
Q Consensus 364 ~~~v~~v~~spdg~~lla~g~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 430 (1120)
......++..|+|. +.+++ .+|.|.++|..+..... ..+.+-... +....-...
T Consensus 49 ~~G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~----------~~~~~f~Ph 115 (355)
T 3sre_A 49 DNGSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNT----------LDISSFNPH 115 (355)
T ss_dssp CSCCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSS----------CCGGGCCEE
T ss_pred CCCcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCC----------CCcCceeee
Confidence 34667788899885 44444 68999999987432111 112111000 001123455
Q ss_pred EEEEcC--CCC-eEEEE-EC--CCeEEEEEccCC-ceeeeeeeeccc-ccCeEEEEEcCCCCceEEEEec----------
Q 001224 431 RVIWSP--DGS-LFGVA-YS--RHIVQIYSYHGG-DEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCG---------- 492 (1120)
Q Consensus 431 ~l~~sp--dg~-~las~-~~--dg~v~iwd~~~~-~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~s---------- 492 (1120)
.+.+.+ +|. +|.++ .. +.+|.+|+++.+ .......++.+. -...+.+++.++|. +.++..
T Consensus 116 Gi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~ 193 (355)
T 3sre_A 116 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKS 193 (355)
T ss_dssp EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHH
T ss_pred eeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCccccc
Confidence 666655 454 44444 22 568889888754 223333344443 23678999999998 566643
Q ss_pred -------CCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEE-ecCCeEEEEecCC
Q 001224 493 -------DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDN 548 (1120)
Q Consensus 493 -------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 548 (1120)
..|.|..+|. ++. ..+...-..-+.++|++ |++.|+.+ +..+.|..|++..
T Consensus 194 ~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~sp--Dg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 194 WEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISP--DGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp HHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECT
T ss_pred chhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECC--CCCEEEEEeCCCCeEEEEEECC
Confidence 1234444443 433 23322334567788865 44555554 4578999999874
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.79 E-value=23 Score=36.54 Aligned_cols=221 Identities=14% Similarity=0.092 Sum_probs=108.8
Q ss_pred CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE
Q 001224 366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 445 (1120)
Q Consensus 366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~ 445 (1120)
.|..|+-...- .++. . ||.|..|-......+.. +. .....|..|+...+-..++ .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------p~------~~~~~i~~ia~G~~hs~~l--~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------PA------ATQSGVDAIAAGNYHSLAL--K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------CG------GGGSCCCEEEECSSEEEEE--E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------Cc------cCCCCEEEEEeCCCEEEEE--E
Confidence 45555554432 2444 4 89999997654332210 00 0112567777654433333 4
Q ss_pred CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeecc
Q 001224 446 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 525 (1120)
Q Consensus 446 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 525 (1120)
||.|..|-.....++... ..-...|..|+...+.. +++ . ||.|..|-......+-.-......|..++.
T Consensus 80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~hs--~al--~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~-- 148 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWAS--YAL--K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDG-- 148 (282)
T ss_dssp -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTEE--EEE--E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE--
T ss_pred -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCEE--EEE--e-CCeEEEecCCCCCcCCCCccCCCCeEEEEc--
Confidence 899999977654333211 11134688777665433 233 3 899999986542222111112345666653
Q ss_pred CCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEE
Q 001224 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 605 (1120)
Q Consensus 526 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 605 (1120)
.....++ -. ||.|..|-.......-.-......|.. ++... .+.++- .||.|+
T Consensus 149 -G~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~---------------------i~~G~--~hs~al-~~G~v~ 201 (282)
T 3qhy_B 149 -GVYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDD---------------------VAGGI--FHSLAL-KDGKVI 201 (282)
T ss_dssp -CSSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEE---------------------EEECS--SEEEEE-ETTEEE
T ss_pred -ccCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEE---------------------EEecC--CEEEEE-ECCeEE
Confidence 2223333 33 799999976554332110000112222 22222 223333 589999
Q ss_pred EEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224 606 FWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 654 (1120)
Q Consensus 606 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 654 (1120)
.|-......+..-. .....|..++....... +. . ||.+..|-..
T Consensus 202 ~wG~n~~gqlg~p~--~~~~~v~~i~~G~~h~~-al-~-~g~v~~wG~n 245 (282)
T 3qhy_B 202 AWGDNRYKQTTVPT--EALSGVSAIASGEWYSL-AL-K-NGKVIAWGSS 245 (282)
T ss_dssp EEECCTTSTTCCCG--GGGSSCCEEEECSSCEE-EE-E-TTEEEEESTT
T ss_pred EEECCCCCCCCCCc--ccCCCceEEEcCCCEEE-EE-E-CCEEEEecCC
Confidence 99754322221100 01124666665544333 33 3 8999999543
No 356
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.55 E-value=12 Score=44.77 Aligned_cols=198 Identities=11% Similarity=0.048 Sum_probs=103.3
Q ss_pred CCcEEEEEeCC----CcEEEEEeecce--eeE-e-----ecccccceEEEEEccCCCEEEEEeCCC------CEEEEECC
Q 001224 877 DNNIIAIGMDD----SSIQIYNVRVDE--VKS-K-----LKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSD 938 (1120)
Q Consensus 877 d~~~lasg~~d----g~v~vwd~~~~~--~~~-~-----l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~v~iWd~~ 938 (1120)
++.+++.|+.+ ..+.+||..+++ .+. . +......-.++.+..+++.++.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 66777777753 368888887653 222 1 111111122233322777888887643 47788888
Q ss_pred CcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCC--eEEEEEcCCceeeeccc---cCCCCCCeeEEEECCC
Q 001224 939 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWV---PRESSAPITHATFSCD 1012 (1120)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~--~v~i~d~~~~~~~~~~~---~~~h~~~v~~l~~s~d 1012 (1120)
+.+-.. +.... . ...-.+++.-.+++.++.| .++ .+.+||..+..-...-. .......-.++.+..+
T Consensus 477 t~~W~~---~~~~p--~--~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 477 TREWSM---IKSLS--H--TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTEEEE---CCCCS--B--CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCcEEE---CCCCC--C--CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 743211 11111 0 1122334443477777774 322 79999998876443321 0011222233555555
Q ss_pred -CcEEEEEEc--C-----CcEEEEEcCCcce-----eeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC----
Q 001224 1013 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---- 1075 (1120)
Q Consensus 1013 -g~~l~s~~~--D-----g~v~iwd~~~~~~-----~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D---- 1075 (1120)
+++++.|+. + ..+.+||+.+.+- -..+......+. ... +++... ++.+++.|+.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R------~~~-~~~~~~-~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR------YGS-QIKYIT-PRKLLIVGGTSPSGL 621 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC------BSC-EEEEEE-TTEEEEECCBCSSCC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc------ccc-eEEEeC-CCEEEEECCccCCCC
Confidence 777777775 2 3589999988872 111111000110 010 222222 26788888753
Q ss_pred ----CcEEEEecCCCCCCCC
Q 001224 1076 ----GGVHVFEPLESEGKWG 1091 (1120)
Q Consensus 1076 ----g~v~vW~~~~~~~~~~ 1091 (1120)
..+.++|+.+.+ |.
T Consensus 622 ~~~~~~v~~yd~~t~~--W~ 639 (695)
T 2zwa_A 622 FDRTNSIISLDPLSET--LT 639 (695)
T ss_dssp CCTTTSEEEEETTTTE--EE
T ss_pred CCCCCeEEEEECCCCe--EE
Confidence 468889988765 65
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.01 E-value=15 Score=41.17 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=61.6
Q ss_pred cceEEEEEccCCC-EEEEEeCCCCEEEEECCCcccccceeeeccCCCC-----CCCCCCcEEEEccC----CcEEEE-Ee
Q 001224 909 KRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VH 977 (1120)
Q Consensus 909 ~~V~~l~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~fspd----g~~la~-~~ 977 (1120)
..-++|+|.|||. .|+.+...|.|++++.+.... ............ ........++|+|+ +.+.++ +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3467899999996 455556789999997543211 111111111100 01245688999997 443333 32
Q ss_pred C------------CeEEEEEcCC----------ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC
Q 001224 978 E------------TQLAIFETTK----------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1023 (1120)
Q Consensus 978 d------------~~v~i~d~~~----------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg 1023 (1120)
+ ..|.-|.+.. .+.+..+...........|+|.|||.+.++.+..+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1344455532 12222222112223468999999998777666443
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=83.10 E-value=54 Score=35.23 Aligned_cols=155 Identities=8% Similarity=0.081 Sum_probs=87.5
Q ss_pred cEEEEEcCCC--ceeeeecC------CCCCeEEEEEe---cC---CCcEEEEEe-CCCcEEEEEeecceeeEeecccccc
Q 001224 846 KISLFNMMTF--KTMATFMP------PPPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLKGHSKR 910 (1120)
Q Consensus 846 ~i~vwd~~~~--~~~~~~~~------~~~~i~~l~~s---p~---d~~~lasg~-~dg~v~vwd~~~~~~~~~l~~h~~~ 910 (1120)
+|.+||+.+. +.++++.- ....+..+++. |. ++.++.... ..+-|.|+|+.+++.-+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence 5777888877 77766532 13457888887 21 134444444 4678999999998876655321
Q ss_pred eEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC----CcEEEEEeCCeEEEEEc
Q 001224 911 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQLAIFET 986 (1120)
Q Consensus 911 V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd----g~~la~~~d~~v~i~d~ 986 (1120)
|.|+.....+. +|.-.-|. ..+..+++||+ ++.|..+.-..-++|.+
T Consensus 201 -----~~pd~~~~~~i--~G~~~~~~----------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V 251 (381)
T 3q6k_A 201 -----FKAERPTKFDY--GGKEYEFK----------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSV 251 (381)
T ss_dssp -----GSCCSCEEEEE--TTEEEEEC----------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEEE
T ss_pred -----CccccCcceEE--CCEEeEec----------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEEE
Confidence 34542111111 23222221 25688899988 77877754444455554
Q ss_pred CCce--------eeeccccCCCCCCeeEEEEC-CCCcEEEEEEcCCcEEEEEcCC
Q 001224 987 TKLE--------CVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus 987 ~~~~--------~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
.+.- .+..+-..+-...-..+++. .+|.++++--....|..|+..+
T Consensus 252 ~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 252 NTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 4321 11111111111233456675 6777777777788999999875
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=82.14 E-value=89 Score=37.04 Aligned_cols=192 Identities=14% Similarity=0.136 Sum_probs=102.8
Q ss_pred EEccCCCEEEEEe--C----CcEEEEEcCCCceeee-ecCCCC--------CeEEEEEecCCCcEEEEEe----------
Q 001224 831 ALSKNDSYVMSAS--G----GKISLFNMMTFKTMAT-FMPPPP--------AATFLAFHPQDNNIIAIGM---------- 885 (1120)
Q Consensus 831 ~~s~d~~~l~~~s--d----g~i~vwd~~~~~~~~~-~~~~~~--------~i~~l~~sp~d~~~lasg~---------- 885 (1120)
+++||+++++.+- + ..++++|+.+++.+.. +. ... ....++|.. +..++++..
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~~~~ 213 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEITSSL 213 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBCTTS
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEEC-CCEEEEEeCCCCCCcCcCC
Confidence 3889999888752 2 3599999999877632 22 111 113457774 444554321
Q ss_pred CCCcEEEEEeecc--eeeEeecccccce-EEEEEccCCCE-----EEEEeCC---CCEEEEECCCcccccceeeeccCCC
Q 001224 886 DDSSIQIYNVRVD--EVKSKLKGHSKRI-TGLAFSHALNV-----LVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGR 954 (1120)
Q Consensus 886 ~dg~v~vwd~~~~--~~~~~l~~h~~~V-~~l~~s~d~~~-----l~s~s~D---g~v~iWd~~~~~~~~~~~~~~~~~~ 954 (1120)
....|+.|.+-+. +-...+.+....+ .+...++++++ +++.+.+ ..+.+.+.+.... ...+....
T Consensus 214 ~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~- 289 (711)
T 4hvt_A 214 YPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL---KLQKINMP- 289 (711)
T ss_dssp SBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC---EEEECCSC-
T ss_pred CCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC---cceEeecC-
Confidence 1246888877553 2223344333333 34555677663 4554423 3345555543111 11111111
Q ss_pred CCCCCCCcEEEEccCCcEEEEE-----------eCCeEEEEEcCCce-------eeeccccCCCCCCeeEEEECCCCcEE
Q 001224 955 TPTAQSDTRVQFHQDQIHFLVV-----------HETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQLV 1016 (1120)
Q Consensus 955 ~~~~~~i~~~~fspdg~~la~~-----------~d~~v~i~d~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l 1016 (1120)
. -..+..+.++.+++.. ..+.|.+.++.+.. ....+........+..+.+..+ .++
T Consensus 290 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 290 S-----DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF 363 (711)
T ss_dssp T-----TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred C-----cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence 0 1223455666666632 35678899987642 1222222233557888999876 567
Q ss_pred EEEEcCCc--EEEEEcCCcc
Q 001224 1017 YACFLDAT--VCVFSAANLK 1034 (1120)
Q Consensus 1017 ~s~~~Dg~--v~iwd~~~~~ 1034 (1120)
++...++. ++++++.+++
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp EEEEETTEEEEEEECEETTE
T ss_pred EEEEECCEEEEEEEECCCCc
Confidence 77777765 6777776665
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.27 E-value=70 Score=34.66 Aligned_cols=207 Identities=10% Similarity=0.035 Sum_probs=91.6
Q ss_pred CcEEEEEeCCCcEEEEEeec-ceeeEee--cccccceEEEEEcc--CCCEEEEEeCCC----CEEEEECCCcccccceee
Q 001224 878 NNIIAIGMDDSSIQIYNVRV-DEVKSKL--KGHSKRITGLAFSH--ALNVLVSSGADS----QLCVWSSDGWEKQKNRFL 948 (1120)
Q Consensus 878 ~~~lasg~~dg~v~vwd~~~-~~~~~~l--~~h~~~V~~l~~s~--d~~~l~s~s~Dg----~v~iWd~~~~~~~~~~~~ 948 (1120)
...|.+|+..| +.+++... ++.-... ......|.+|++.| ++.+.+. +..| .|... .+.++. ...+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s-~D~G~t--W~~~ 96 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMA-ARTGHLGPTVFRS-DDGGGN--WTEA 96 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEE-EEC--CCEEEEEE-SSTTSC--CEEC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEE-ecCCCCCccEEEe-CCCCCC--ceEC
Confidence 34566677777 55555432 2211111 12235699999998 4555544 3343 23322 222221 1111
Q ss_pred eccCCCCC--------CCCCCcEEEEcc---CCcEEEEEeCCeEEEEEcC--Cceeeecccc--------------CCCC
Q 001224 949 QIPTGRTP--------TAQSDTRVQFHQ---DQIHFLVVHETQLAIFETT--KLECVKQWVP--------------RESS 1001 (1120)
Q Consensus 949 ~~~~~~~~--------~~~~i~~~~fsp---dg~~la~~~d~~v~i~d~~--~~~~~~~~~~--------------~~h~ 1001 (1120)
....+... ....|.++++.| .+.+.+.+..+.|...+-. +-+.+..... ....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCC
Confidence 11100000 012466788886 3455554566665544321 1122211100 0123
Q ss_pred CCeeEEEECCC-CcEEEEEEcCCcEEEEEcCCcceeeeeCC---CcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCc
Q 001224 1002 APITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINP---SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1077 (1120)
Q Consensus 1002 ~~v~~l~~s~d-g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~ 1077 (1120)
..|.+|.+.|. ...|+.+..++.|...+ +.|+.-..+.. ..++|.........+..++++|.++..|..+...|
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 46889999883 44455555555444432 22332222210 11122110000011237888886667777776544
Q ss_pred EEEEecCCCCCCCCCC
Q 001224 1078 VHVFEPLESEGKWGVP 1093 (1120)
Q Consensus 1078 v~vW~~~~~~~~~~~~ 1093 (1120)
||....+..+|...
T Consensus 255 --l~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 255 --IYRMDRREGVWKRI 268 (394)
T ss_dssp --EEEEETTTTEEECG
T ss_pred --EEEeCCCCCcceEC
Confidence 44444444555443
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.20 E-value=68 Score=39.69 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=47.6
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCC---CCcCeEEEcC-CCCEEEEE---ECCCcEEEEEcc
Q 001224 582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL---PASPRIRFNK-DGCLLAVS---TNDNGIKILATS 654 (1120)
Q Consensus 582 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~-~~~~l~~~---~~dg~i~iwd~~ 654 (1120)
.+.+++..++..++++.+.|+++|+|++.+++++.+....... .........+ .+.++.+- ..+|.+++|.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~ 316 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN 316 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence 4556677788889999999999999999999999887543211 1112233334 33443332 235777788654
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=74.23 E-value=91 Score=32.76 Aligned_cols=209 Identities=10% Similarity=-0.008 Sum_probs=108.0
Q ss_pred CCceEEEEEcCCCCeEEEEECCCeEEEEE---ccCC------ceeeeeeeecccccCeEEEEEcC---CCCceEEEEecC
Q 001224 426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYS---YHGG------DEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGD 493 (1120)
Q Consensus 426 ~~~V~~l~~spdg~~las~~~dg~v~iwd---~~~~------~~~~~~~~l~~h~~~V~~v~~s~---d~~~~~l~s~s~ 493 (1120)
.+.+..+........|+.-+..|.++-.. +... ..+.....+.. ...|.++...+ +.. +++..+.
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~--~~v~~T~ 117 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAP--YLVLATR 117 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSS--EEEEEET
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCC--EEEEEcC
Confidence 44666666667777788788888766544 3322 21111122332 34555554333 355 7999999
Q ss_pred CCcEEEEECCCC-------ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecC--CCCCceeeeCCCCceeE
Q 001224 494 DKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEAPGRWCTT 564 (1120)
Q Consensus 494 d~~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~ 564 (1120)
+|.|+.-.+..- .....+.. .+.+..+..... ...|+..+..|.+..+... .-.. .......+..
T Consensus 118 ~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~--~d~ill~T~~G~~~rf~~~~~eip~---~gr~a~Gv~~ 191 (327)
T 3uc1_A 118 NGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSA--GDDLLLVSANGQSIRFSATDEALRP---MGRATSGVQG 191 (327)
T ss_dssp TSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECT--TCEEEEEETTSEEEEEECCTTTSCC---CCTTSBCEES
T ss_pred CCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecC--CCEEEEEECCCeEEEEECcccccCc---CCcCCCCeee
Confidence 999999886542 22223333 344444433222 2467778888988877765 2111 1111111222
Q ss_pred EEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------eeEEEecCCCCCCcCeEEEcCCCC
Q 001224 565 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-------LLTSIDADGGLPASPRIRFNKDGC 637 (1120)
Q Consensus 565 ~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~ 637 (1120)
+.+.++. .+..+...+++.+++.++..|.++.-.+.... -+..+........+..+....+..
T Consensus 192 i~L~~~d----------~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~ 261 (327)
T 3uc1_A 192 MRFNIDD----------RLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDS 261 (327)
T ss_dssp SCCCTTC----------CEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTC
T ss_pred ecCCCCC----------EEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCc
Confidence 2222222 33334333455689999999999888764321 222222211112333333333444
Q ss_pred EEEEEECCCcEEEEEc
Q 001224 638 LLAVSTNDNGIKILAT 653 (1120)
Q Consensus 638 ~l~~~~~dg~i~iwd~ 653 (1120)
.++..+.+|.+.-++.
T Consensus 262 ~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 262 ELYAVTSGGGVIRTAA 277 (327)
T ss_dssp EEEEEEGGGCEEEEEG
T ss_pred cEEEEcCCCeEEEEeh
Confidence 5555666666665654
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.37 E-value=13 Score=46.15 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=35.7
Q ss_pred CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCC
Q 001224 1001 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1042 (1120)
Q Consensus 1001 ~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~ 1042 (1120)
...+.+++..++..++++-+.|+++|||++.+++++......
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 345677788889999999999999999999999999876543
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.29 E-value=1.1e+02 Score=32.08 Aligned_cols=159 Identities=8% Similarity=0.057 Sum_probs=91.1
Q ss_pred CCCCccEEEEcc---CCCEEEEEe-CCcEEEEEcCCCcee-------eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001224 823 PEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTM-------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 891 (1120)
Q Consensus 823 ~~~~v~~l~~s~---d~~~l~~~s-dg~i~vwd~~~~~~~-------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~ 891 (1120)
....|.++..-+ +..+++..+ +|.++-..+...... ..+.. ...+..+.... +...|+..+..|.+.
T Consensus 93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~ 170 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSI 170 (327)
T ss_dssp TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEE
Confidence 345555554433 467888887 899998887653321 12332 34565555555 455677788899998
Q ss_pred EEEee--c---------ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccc-----ceeeeccCCCC
Q 001224 892 IYNVR--V---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-----NRFLQIPTGRT 955 (1120)
Q Consensus 892 vwd~~--~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-----~~~~~~~~~~~ 955 (1120)
.+... . |...-.+. ....|.++...+++..|+.++..|.++.-.+....... ...++.... .
T Consensus 171 rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~-~ 248 (327)
T 3uc1_A 171 RFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR-R 248 (327)
T ss_dssp EEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT-T
T ss_pred EEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC-C
Confidence 88776 2 11111232 34567777766667789999999999888766533211 111111110 1
Q ss_pred CCCCCCcEEE-EccCCcEEEEEeCCeEEEEEcCC
Q 001224 956 PTAQSDTRVQ-FHQDQIHFLVVHETQLAIFETTK 988 (1120)
Q Consensus 956 ~~~~~i~~~~-fspdg~~la~~~d~~v~i~d~~~ 988 (1120)
..+..+. ...+...++++.+|.+.-++...
T Consensus 249 ---d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 249 ---GRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp ---CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred ---CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 1233333 33444555557777777777654
No 365
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=69.32 E-value=1.3e+02 Score=32.36 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=41.1
Q ss_pred eEEEEEccCC--ceeeeeeeecc----cccCeEEEEEc---CC---CCceEEEEecCCCcEEEEECCCCceeEEe
Q 001224 449 IVQIYSYHGG--DEVRQHLEIDA----HVGGVNDIAFS---HP---NKQLCVITCGDDKTIKVWDATNGAKQYIF 511 (1120)
Q Consensus 449 ~v~iwd~~~~--~~~~~~~~l~~----h~~~V~~v~~s---~d---~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 511 (1120)
.|.+||+.++ +.++.. .+.. ....+..+++. ++ +.....++-+...-|.|+|+.+++.-+.+
T Consensus 124 kLv~~DL~t~~~~li~~y-~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRY-YFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp EEEEEESSSTTCCEEEEE-ECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCceeEEEE-ECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 5788999988 766533 3321 23467888887 22 12324566666788999999998876655
No 366
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=68.96 E-value=1.5e+02 Score=32.98 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=59.7
Q ss_pred CccEEEEccCCC--EEEEEeCCcEEEEEcCCCc---eeeeec---------CCCCCeEEEEEecC---CCcEEEEEeCC-
Q 001224 826 AVPCFALSKNDS--YVMSASGGKISLFNMMTFK---TMATFM---------PPPPAATFLAFHPQ---DNNIIAIGMDD- 887 (1120)
Q Consensus 826 ~v~~l~~s~d~~--~l~~~sdg~i~vwd~~~~~---~~~~~~---------~~~~~i~~l~~sp~---d~~~lasg~~d- 887 (1120)
....|+|.|||. ++++-..|.|++++..... .+..+. ........|+|+|+ ++.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 6655558999999754221 112111 11456889999992 24444433321
Q ss_pred -----------CcEEEEEeec----------ceeeEeec----ccccceEEEEEccCCCEEEEEeCCC
Q 001224 888 -----------SSIQIYNVRV----------DEVKSKLK----GHSKRITGLAFSHALNVLVSSGADS 930 (1120)
Q Consensus 888 -----------g~v~vwd~~~----------~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s~Dg 930 (1120)
..|.-|.+.. .+.+..+. .|. ...|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCCCC
Confidence 1344455432 12222222 243 57899999998888776543
No 367
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=68.24 E-value=20 Score=31.35 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=55.5
Q ss_pred HHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccC
Q 001224 14 QFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKH 88 (1120)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~ 88 (1120)
.+++..-|.++.+.+++-..+..+ ...=.-....|+|++|++.+.+...++... .. +.+ ..=.=+...|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~-a~~----~lg~~~~~~~ 95 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK-GYI----RKAACLVAMR 95 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHH----HHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH-HHH----HHHHHHHHCC
Confidence 345555588888887775544433 112233456788888888888763333222 11 111 1122234568
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 89 DRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 89 ~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
+.++|+..+++-+. +.+.+.+-...|..+|
T Consensus 96 ~~~~A~~~~~~al~-l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 96 EWSKAQRAYEDALQ-VDPSNEEAREGVRNCL 125 (126)
T ss_dssp CHHHHHHHHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH-HCcCCHHHHHHHHHhc
Confidence 88888888887544 2334555555555543
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=64.03 E-value=38 Score=39.58 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=31.1
Q ss_pred CeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCC
Q 001224 1003 PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1041 (1120)
Q Consensus 1003 ~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~ 1041 (1120)
.|.++.+ +..+|++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 578999999999999999999999887765
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=62.86 E-value=1.4e+02 Score=30.44 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=72.6
Q ss_pred CCCCccEEEEcc-CCCEEEEEe-CCcEEEEEcCCCc------eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224 823 PEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFK------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 894 (1120)
Q Consensus 823 ~~~~v~~l~~s~-d~~~l~~~s-dg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 894 (1120)
....|.++.... +..+++..+ +|.++-..+.... ....++ ....+..+.... +...|+..+.+|.+..+.
T Consensus 66 ~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 66 REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFS 143 (276)
T ss_dssp TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEE
Confidence 355666664422 466777777 8999998876543 111222 234566665555 555777888999998887
Q ss_pred eec---------ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224 895 VRV---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 939 (1120)
Q Consensus 895 ~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~ 939 (1120)
... |.....+.. ...|.++...+++..++..+..|.++...+..
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred hhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 643 111122332 35676666666677888999999999888765
No 370
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=57.32 E-value=74 Score=27.08 Aligned_cols=90 Identities=8% Similarity=-0.040 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHH
Q 001224 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1120)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1120)
....+-..++...-|.++...+++-.....+ ...-.-....|+|++|+.++.......... ..+.+.+ -..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l-a~~- 93 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRK-AAA- 93 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHH-HHH-
Confidence 3445555566666688888888876665443 122233466899999988888763332221 1122211 112
Q ss_pred HHHHccCCHHHHHHHHHhhcc
Q 001224 82 LEALDKHDRAKAVEILVKDLK 102 (1120)
Q Consensus 82 lEll~~~~~~~a~~~l~~~l~ 102 (1120)
+...|+.++|+..+++-+.
T Consensus 94 --~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 --LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp --HHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHhhHHHHHHHHHHHHH
Confidence 2456889999988886543
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=56.34 E-value=1.8e+02 Score=29.62 Aligned_cols=205 Identities=9% Similarity=0.031 Sum_probs=107.3
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEE---EEeecceeeEeecccccceEEEEEcc-CCCEEEEEeCCCCEEEEECCCccc
Q 001224 867 AATFLAFHPQDNNIIAIGMDDSSIQI---YNVRVDEVKSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEK 942 (1120)
Q Consensus 867 ~i~~l~~sp~d~~~lasg~~dg~v~v---wd~~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~ 942 (1120)
.+..+.... ....|+.-+++|.++- |++..+.-...+. ....|.++.... +..+++.++.+|.++-..+.....
T Consensus 25 ~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 444444444 3344555666776654 3333221111133 345566664421 567899999999999998765431
Q ss_pred c--cceeeeccCCCCCCCCCCcEEEEccCC-cEEEEEeCCeEEEEEcCCcee-------eeccccCCCCCCeeEEEECCC
Q 001224 943 Q--KNRFLQIPTGRTPTAQSDTRVQFHQDQ-IHFLVVHETQLAIFETTKLEC-------VKQWVPRESSAPITHATFSCD 1012 (1120)
Q Consensus 943 ~--~~~~~~~~~~~~~~~~~i~~~~fspdg-~~la~~~d~~v~i~d~~~~~~-------~~~~~~~~h~~~v~~l~~s~d 1012 (1120)
. ....+...++ ..+..+...... ..++.+..|.+..+....-.. +..+.... ...|.++...++
T Consensus 103 ~~~G~~~i~lkeg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~ 176 (276)
T 3no0_A 103 KAQGMPIIKLTEG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNG 176 (276)
T ss_dssp CSTTEECSCCCTT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESS
T ss_pred hcCCeEEEecCCC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCC
Confidence 0 1111112111 234444444333 445557888888877543221 11122222 456777666666
Q ss_pred CcEEEEEEcCCcEEEEEcCCcceeeeeC-CCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEE--EecCC
Q 001224 1013 SQLVYACFLDATVCVFSAANLKLRCRIN-PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV--FEPLE 1085 (1120)
Q Consensus 1013 g~~l~s~~~Dg~v~iwd~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~v--W~~~~ 1085 (1120)
+.+++..+..|.++...+.......+-. ....+.. +..+. .+.... +...++..+.+|.+.. +++.+
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~---~~~lv--~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGT---KDTLV--DLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCS---SSCEE--EEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcC---CCcEE--EEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 7788889999999999876544332210 0000011 11122 232222 3456777788888887 77654
No 372
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=54.03 E-value=2e+02 Score=29.67 Aligned_cols=202 Identities=11% Similarity=0.020 Sum_probs=100.9
Q ss_pred EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEcc--
Q 001224 379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-- 456 (1120)
Q Consensus 379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~-- 456 (1120)
++++-+.+|.|+--.+..-+..... ..-.....+. ..+.+..+........|+..+..|.++-....
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~----------~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~el 73 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRG----------GKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 73 (307)
T ss_dssp EEEEEETTSEEEEEECC-------------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccC----------CCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHC
Confidence 4777788898876655432221100 0000000112 23455556566667788888888886666542
Q ss_pred -C------CceeeeeeeecccccCeEEEEEc---CCCCceEEEEecCCCcEEEEECCC-------CceeEEeeccccCeE
Q 001224 457 -G------GDEVRQHLEIDAHVGGVNDIAFS---HPNKQLCVITCGDDKTIKVWDATN-------GAKQYIFEGHEAPVY 519 (1120)
Q Consensus 457 -~------~~~~~~~~~l~~h~~~V~~v~~s---~d~~~~~l~s~s~d~~i~vwd~~~-------~~~~~~~~~h~~~v~ 519 (1120)
. |..+.....+. ....|.++... .++. +++..+.+|.++.-.+.. |.....+..+ +.+.
T Consensus 74 p~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~--~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv 149 (307)
T 1zi0_A 74 PEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGV--KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELI 149 (307)
T ss_dssp CCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTC--EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEE
T ss_pred cCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCc--EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEE
Confidence 2 11111111232 23356555432 2444 688889999999987642 2121223333 4554
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224 520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 599 (1120)
Q Consensus 520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 599 (1120)
.+.... .+ ..++..+.+|.+..+....-... ......+..+.+.++. .+..+....++..+++.+
T Consensus 150 ~~~~~~-~~-~~i~l~T~~G~~irf~~~~v~~~---gr~a~Gv~~i~L~~~d----------~Vv~~~~~~~~~~ll~~T 214 (307)
T 1zi0_A 150 GVDLTS-GE-DEVMLFSAEGKVVRFKESSVRAM---GCNTTGVRGIRLGEGD----------KVVSLIVPRGDGAILTAT 214 (307)
T ss_dssp EEEEEC-TT-CEEEEEETTSEEEEEEGGGSCBC---CTTCCCEECCCCCTTC----------CEEEEECCCSSCEEEEEE
T ss_pred EEEEeC-CC-CEEEEECCCCcEEEEEHHHcCcc---CCCCCCeEeEEeCCCC----------EEEEEEEecCCCEEEEEE
Confidence 444332 22 45777778888877766542111 1111223333332222 333333334455788899
Q ss_pred CCCeEEEEECC
Q 001224 600 DDFSIKFWDMD 610 (1120)
Q Consensus 600 ~dg~i~iwd~~ 610 (1120)
..|.++-.++.
T Consensus 215 ~~G~~Kr~~~~ 225 (307)
T 1zi0_A 215 QNGYGKRTAVA 225 (307)
T ss_dssp TTSEEEEECGG
T ss_pred cCCceEEEEHH
Confidence 99999888763
No 373
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=53.15 E-value=56 Score=33.66 Aligned_cols=85 Identities=16% Similarity=0.014 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhhcC-hHHHHHHHHH--hcCCCc-c--H--HHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHH
Q 001224 5 SRELVFLILQFLDEEK-FKETVHKLEQ--ESGFFF-N--M--KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEI 76 (1120)
Q Consensus 5 ~~e~~rli~q~L~~~g-~~~s~~~L~~--Esg~~~-~--~--~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i 76 (1120)
.-+.++++.+++...| +.++.+.|++ +.++.. + . ..=.-....|++++|++.+.+. .. .. +.+.
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~----~~--~~-~~~~- 135 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG----DS--LE-CMAM- 135 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTC----CS--HH-HHHH-
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC----CC--HH-HHHH-
Confidence 3456778888888887 7777777776 334323 2 1 1113345778888888888771 11 11 1111
Q ss_pred HHHHHHHHHccCCHHHHHHHHHhh
Q 001224 77 RKQKYLEALDKHDRAKAVEILVKD 100 (1120)
Q Consensus 77 ~~~~~lEll~~~~~~~a~~~l~~~ 100 (1120)
.-+. ++..|+.++|+..+++-
T Consensus 136 l~~~---~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 136 TVQI---LLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHH---HHHTTCHHHHHHHHHHH
T ss_pred HHHH---HHHCCCHHHHHHHHHHH
Confidence 1112 23466777777777654
No 374
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=51.59 E-value=53 Score=29.55 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhcCCCcc--H---HHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHH
Q 001224 21 FKETVHKLEQESGFFFN--M---KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVE 95 (1120)
Q Consensus 21 ~~~s~~~L~~Esg~~~~--~---~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~ 95 (1120)
+.++...+++-.....+ + ..=+-....|+|++|++++.+...+.... .. +.+ .+=.. +...|+.++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~-a~~-~lg~~---~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PK-AHR-FLGLL---YELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHH-HHHHH---HHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HH-HHH-HHHHH---HHHcCchHHHHH
Confidence 45666667666655443 1 11234577899999999999874443222 11 222 22222 344799999999
Q ss_pred HHHhhcccccccCHHHHHHHHHHhcc
Q 001224 96 ILVKDLKVFSTFNEELFKEITQLLTL 121 (1120)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1120)
.+++.+. +.+.+.+-+..|+.++..
T Consensus 87 ~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 9997654 244467778888877653
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=49.85 E-value=31 Score=39.63 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=43.2
Q ss_pred CCcEEEEccCCcEEEEEe-------------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE
Q 001224 960 SDTRVQFHQDQIHFLVVH-------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1020 (1120)
Q Consensus 960 ~i~~~~fspdg~~la~~~-------------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1020 (1120)
..-.|+|+|.|.++++-. +..+.+.+..+++..+.+.. .-..+++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEEE
Confidence 446799999999666521 12466677777777665553 3378999999999999887663
No 376
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=49.30 E-value=2.4e+02 Score=29.17 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=110.8
Q ss_pred CCCcceeeccCCCcceeeecccCCCCcc----ceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCC
Q 001224 718 ADVKPRITEESNDKSKVWKLTELSEPNQ----CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 793 (1120)
Q Consensus 718 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 793 (1120)
++..++++.+.+|.++--.+........ ...+.+. ....+..+........++..+..|.++-..... . +
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk---e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~--i-p 79 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN---DGDEIVIALCVNTHDYLFMISNEGKLYLINAYE--I-K 79 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC---TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGG--S-C
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC---CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHH--C-C
Confidence 4566788899999998887765433221 1111111 234455555555556677778887766544311 0 0
Q ss_pred CCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc---CCCEEEEEe-CCcEEEEEcCCCc-------eeeeec
Q 001224 794 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFK-------TMATFM 862 (1120)
Q Consensus 794 ~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~---d~~~l~~~s-dg~i~vwd~~~~~-------~~~~~~ 862 (1120)
.... ...|..+...+. ......|.++...+ +..+++..+ .|.++...+.... ....+.
T Consensus 80 ~~~r----------~~~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~ 148 (312)
T 1suu_A 80 DSSR----------ASKGQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN 148 (312)
T ss_dssp C-----------------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC
T ss_pred CCCc----------cCCCcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC
Confidence 0000 012222211121 11334455554332 355666666 8998888875332 222233
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc---------eeeEeecccccceEEEEEccCCCEEEEEeCCCCEE
Q 001224 863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 933 (1120)
Q Consensus 863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~ 933 (1120)
. ...+..+.... +...++..+.+|.+..+....- ...-.+.. .+.|.++....++..|++.+..|..+
T Consensus 149 ~-~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~k 225 (312)
T 1suu_A 149 D-KDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGK 225 (312)
T ss_dssp T-TCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEE
T ss_pred C-CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceE
Confidence 2 45566666554 4556778899999999887541 12222332 45566666655667788889999999
Q ss_pred EEECCC
Q 001224 934 VWSSDG 939 (1120)
Q Consensus 934 iWd~~~ 939 (1120)
..++..
T Consensus 226 r~~~~e 231 (312)
T 1suu_A 226 RLNMSK 231 (312)
T ss_dssp EEEGGG
T ss_pred EEEHHH
Confidence 888765
No 377
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=48.04 E-value=1.1e+02 Score=24.95 Aligned_cols=102 Identities=8% Similarity=-0.064 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHH
Q 001224 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1120)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l 82 (1120)
...+...++...-|.++...+++-.....+ ...-.-....|+|++|+.++.......... .. +.+.+ -.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~-~~~~~----a~ 80 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GK-GYSRK----AA 80 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HH-HHHHH----HH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HH-HHHHH----HH
Confidence 344555566666688887777765433332 112233456789999988888763332221 11 21111 11
Q ss_pred HHHccCCHHHHHHHHHhhcccccccCHHHHHHHH
Q 001224 83 EALDKHDRAKAVEILVKDLKVFSTFNEELFKEIT 116 (1120)
Q Consensus 83 Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1120)
-+...|+..+|+..+++-+.- .+.+......+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH-EANNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHH
Confidence 124468888888888865432 222444444443
No 378
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=46.69 E-value=69 Score=27.73 Aligned_cols=101 Identities=10% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHhhcChHHHHHHHHHhcCCCcc-HHH----HHHHHhccCHHHHHHHhcccccccCcccc-hhhHHHHHHHHHHHHHccC
Q 001224 15 FLDEEKFKETVHKLEQESGFFFN-MKY----FEDEVHNGNWDDVEKYLSGFTKVDDNRYS-MKIFFEIRKQKYLEALDKH 88 (1120)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-~~~----~~~~i~~g~w~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~lEll~~~ 88 (1120)
+.+..-|.+|...+++--.+..+ ... =.-....|+|++|++.+.+...+...... ...+-.++...=.-+...+
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 44455588888888775554443 211 13346789999999888775222111100 0011112222222234568
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001224 89 DRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1120)
Q Consensus 89 ~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1120)
++.+|+..+++-|.- ..+++.+..|..
T Consensus 98 ~~~~A~~~~~kal~~--~~~~~~~~~l~~ 124 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSE--FRDPELVKKVKE 124 (127)
T ss_dssp CHHHHHHHHHHHHHH--SCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcCHHHHHHHHH
Confidence 899999998876652 125666655544
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.15 E-value=77 Score=40.28 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=33.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC
Q 001224 582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 621 (1120)
Q Consensus 582 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 621 (1120)
.+.+++..++..++++.+.|+++|+|++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 3445566677889999999999999999999999887643
No 380
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=45.22 E-value=22 Score=31.49 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=25.7
Q ss_pred CcchHHHHHHHHHHHhhcChH-HHHHHHHHhcCCCc
Q 001224 2 SSLSRELVFLILQFLDEEKFK-ETVHKLEQESGFFF 36 (1120)
Q Consensus 2 ~~~~~e~~rli~q~L~~~g~~-~s~~~L~~Esg~~~ 36 (1120)
+..++++...|+..|.+.||- .+...+.++.|+..
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~ 53 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSV 53 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCH
Confidence 445677899999999999984 45566666667654
No 381
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=45.05 E-value=3.2e+02 Score=29.29 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=40.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------ee---EEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001224 582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--------LL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650 (1120)
Q Consensus 582 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 650 (1120)
.+..+.++....+.++...||.|+.|-....- .. ..+.... ...|..++. .....++-..+|.|+.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~-~~~i~~va~--G~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLR-GIEVVDVAA--GGAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT-TSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccC-CCeEEEEEe--CcCeEEEEeCCCeEEE
Confidence 34456666666778888899999999643211 01 1111111 112433333 4456666778999999
Q ss_pred EEcc
Q 001224 651 LATS 654 (1120)
Q Consensus 651 wd~~ 654 (1120)
|-..
T Consensus 183 wG~n 186 (389)
T 3kci_A 183 WGKG 186 (389)
T ss_dssp EECC
T ss_pred eCCC
Confidence 9654
No 382
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=44.21 E-value=1.4e+02 Score=30.46 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=8.5
Q ss_pred HhccCHHHHHHHhccc
Q 001224 45 VHNGNWDDVEKYLSGF 60 (1120)
Q Consensus 45 i~~g~w~~~~~~~~~~ 60 (1120)
...|++++|+..+..+
T Consensus 141 ~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 141 LKLDRLDLARKELKKM 156 (291)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 3455555555555554
No 383
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=44.18 E-value=76 Score=32.47 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=60.9
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHH
Q 001224 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1120)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lE 83 (1120)
+.+-..++..-.|.++...+++-.....+ ...-+-.+..|++++|+..+.++....... ....-..-++
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~ 194 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHH
Confidence 33444445555577777777765554443 223345577899999999999884433221 1112233344
Q ss_pred HHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001224 84 ALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121 (1120)
Q Consensus 84 ll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1120)
++..++..+|+..|++.+.- .+.+.+-...|+.++..
T Consensus 195 l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHH
Confidence 55566667777777765442 33355666666666543
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.77 E-value=51 Score=37.38 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=43.4
Q ss_pred CCcEEEEccCCcEEEEE--e-----------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc
Q 001224 960 SDTRVQFHQDQIHFLVV--H-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus 960 ~i~~~~fspdg~~la~~--~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
....|+|+++|.+.++. . ...+..++..+++..+.+.. .....++.++||||++.|+++-.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEEEe
Confidence 45789999999877742 1 12577777777776555432 22467999999999999887753
No 385
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=43.50 E-value=1.6e+02 Score=30.44 Aligned_cols=109 Identities=10% Similarity=0.208 Sum_probs=58.9
Q ss_pred HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhccc-ccccCHHHHHHHH
Q 001224 38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKV-FSTFNEELFKEIT 116 (1120)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~-~~~~~~~~~~~l~ 116 (1120)
..+|++.|.+|+|=+|.+.+..+ |.-++.++++.+|+.+|..-..- ++.-....--.|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 67899999999999997776655 22233344555555555542211 1222334444555
Q ss_pred HHhccccccchhhhccCCCchHHHHHHHHHHHhhcccCCCcccccCCCCCcchHHHHHHHHHHHHHHHh
Q 001224 117 QLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQL 185 (1120)
Q Consensus 117 ~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q~~~ 185 (1120)
.++.-- . +.. .+.-...++.+|.+.+.. +|++. + ....+++.|++|-...
T Consensus 77 ~llvev-~---~~~-~~~~~~~~~~rl~~l~~~-~p~~~------------~-~r~~fi~~ai~WS~~~ 126 (312)
T 2wpv_A 77 FYLLEV-Y---DLA-EVKVDDISVARLVRLIAE-LDPSE------------P-NLKDVITGMNNWSIKF 126 (312)
T ss_dssp HHHHHH-H---HHT-TCCCSHHHHHHHHHHHTT-CCTTC------------T-THHHHHHHHHHHHHHT
T ss_pred HHHHHH-H---HHc-CCCCCHHHHHHHHHHHHH-CCCCC------------c-hHHHHHHHHHHHHhhc
Confidence 544311 1 110 111134456666644444 45422 2 3578888899888773
No 386
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=41.33 E-value=24 Score=27.98 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhcCCC
Q 001224 7 ELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1120)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1120)
-+.-||-.||.=.||+-|+.+|+-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 46789999999999999999999999996
No 387
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=41.29 E-value=1.4e+02 Score=26.61 Aligned_cols=82 Identities=11% Similarity=-0.036 Sum_probs=39.7
Q ss_pred HHHHhhcChHHHHHHHHHhcCCCcc-H----HHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHcc
Q 001224 13 LQFLDEEKFKETVHKLEQESGFFFN-M----KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87 (1120)
Q Consensus 13 ~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~ 87 (1120)
..++...-|.++...+++=..+..+ . ..=.-....|+|++|+..+.....+.... .. +.|.+ =.. ++..
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~-~~~~l-g~~---~~~~ 102 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE-PR-FPFHA-AEC---LLQX 102 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-TH-HHHHH-HHH---HHHT
T ss_pred HHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch-HHHHH-HHH---HHHc
Confidence 3344444466666666654433332 1 11123356677777777776653222111 11 22211 111 2346
Q ss_pred CCHHHHHHHHHhh
Q 001224 88 HDRAKAVEILVKD 100 (1120)
Q Consensus 88 ~~~~~a~~~l~~~ 100 (1120)
|+.++|+..+++.
T Consensus 103 g~~~~A~~~~~~a 115 (148)
T 2vgx_A 103 GELAEAESGLFLA 115 (148)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777777777654
No 388
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=40.25 E-value=3.7e+02 Score=28.63 Aligned_cols=157 Identities=11% Similarity=0.031 Sum_probs=83.8
Q ss_pred cCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEE
Q 001224 374 PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 453 (1120)
Q Consensus 374 pdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iw 453 (1120)
|+.. ++++.+.+|.|+=-.+..-+...+ ...-.....+. ..+.+..+........|+..+..|.+.-+
T Consensus 5 ~~e~-~~v~lT~~GyIKr~~l~~y~~~~r----------~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~ 72 (370)
T 3l6v_A 5 APED-VVVTLSHAGYAKRQPVSAYRAQRR----------GGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWL 72 (370)
T ss_dssp CCCC-EEEEEESSCEEEEEEHHHHHHTCC----------CCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred cCCC-EEEEEeCCCEEEEeeHHHhhhhcc----------CCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 5556 588888999988654432111000 00000000122 35567777777777888888888887665
Q ss_pred Ecc---C------CceeeeeeeecccccCeEEEEEcC---CCCceEEEEecCCCcEEEEECCCC-------ceeEEeecc
Q 001224 454 SYH---G------GDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGH 514 (1120)
Q Consensus 454 d~~---~------~~~~~~~~~l~~h~~~V~~v~~s~---d~~~~~l~s~s~d~~i~vwd~~~~-------~~~~~~~~h 514 (1120)
... . |..+.....|.. ...|.++.... ++. +++.++..|.++...+..- .....+..
T Consensus 73 ~~~eip~~~r~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~--~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~- 148 (370)
T 3l6v_A 73 PVHQLPEAGSNARGRPIINWIPLES-GERVQAVLPVREYADNR--YVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE- 148 (370)
T ss_dssp EGGGSCBCCTTSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTC--EEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-
T ss_pred EHHHCcCCCcccCCcCHhhccCCCC-CCEEEEEEEeccCCCCc--EEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-
Confidence 542 1 221111112332 34555554332 344 6888999999999886432 21222332
Q ss_pred ccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224 515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 548 (1120)
Q Consensus 515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 548 (1120)
.+.+..+.... .+ ..++..+..|.+..+....
T Consensus 149 ~d~lv~v~~~~-~~-~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 149 GDALVGVALTD-GD-RDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp TCCEEEEEEEC-SC-CEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEEEeC-CC-ceEEEEeCCCeEEEEEccc
Confidence 34444444332 22 4677777788887776543
No 389
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.57 E-value=13 Score=47.51 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=35.0
Q ss_pred CCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcc
Q 001224 1002 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1044 (1120)
Q Consensus 1002 ~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~ 1044 (1120)
..+.+++..++..+|++-+.|+++|||++.+++++........
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~~ 280 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQT 280 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCCS
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhhc
Confidence 3455666778899999999999999999999999887664433
No 390
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=39.16 E-value=94 Score=28.13 Aligned_cols=86 Identities=13% Similarity=-0.002 Sum_probs=47.6
Q ss_pred HHHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHH
Q 001224 10 FLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1120)
Q Consensus 10 rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEl 84 (1120)
.+-..++...-|.++...+++-..+..+ ...=.-....|+|++|+.++.+...+.... .. +.| .+=.. +
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~-~~~-~lg~~---~ 89 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SK-AWS-RLGLA---R 89 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHH-HHHHH---H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HH-HHH-HHHHH---H
Confidence 3344445555577777777765554432 122233466788888888887763333222 11 222 11222 2
Q ss_pred HccCCHHHHHHHHHhhc
Q 001224 85 LDKHDRAKAVEILVKDL 101 (1120)
Q Consensus 85 l~~~~~~~a~~~l~~~l 101 (1120)
...|++++|+..+++-+
T Consensus 90 ~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 34688888888887543
No 391
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=39.08 E-value=1.1e+02 Score=26.01 Aligned_cols=88 Identities=8% Similarity=-0.011 Sum_probs=51.9
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHH
Q 001224 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1120)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lE 83 (1120)
..+-..++...-|.++...+++-..+..+ ...=.-....|+|++|+..+.......... .. +.+ .+=..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~-~~~-~lg~~--- 81 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VR-AYI-RKATA--- 81 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHH-HHHHH---
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HH-HHH-HHHHH---
Confidence 33444556666688888888776554443 122233467899999999888873333222 11 222 11222
Q ss_pred HHccCCHHHHHHHHHhhcc
Q 001224 84 ALDKHDRAKAVEILVKDLK 102 (1120)
Q Consensus 84 ll~~~~~~~a~~~l~~~l~ 102 (1120)
+...|+.++|+..+++-+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 3446889999998886543
No 392
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.98 E-value=1.9e+02 Score=24.93 Aligned_cols=104 Identities=12% Similarity=0.041 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHhcCCCcc----H----HHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHH
Q 001224 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN----M----KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1120)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~----~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 79 (1120)
...+-..++...-|.++...+++-..+..+ . ..-.-....|+|++|+.++.......... .. +.+.+ =.
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~-~~~~~-a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VK-ALYRR-SQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HH-HHHHH-HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HH-HHHHH-HH
Confidence 344455555566677777777776655443 1 11133466788888888877763332221 11 22211 11
Q ss_pred HHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001224 80 KYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1120)
Q Consensus 80 ~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1120)
. +...++.++|+.++++-+.- .+.+......+..+
T Consensus 108 ~---~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 108 A---LEKLGRLDQAVLDLQRCVSL-EPKNKVFQEALRNI 142 (148)
T ss_dssp H---HHHHTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHH
T ss_pred H---HHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHH
Confidence 1 23457788888888765432 22234444444433
No 393
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=37.96 E-value=1.3e+02 Score=28.70 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc-HH--------------------HHHHHHhccCHHHHHHHhccccccc
Q 001224 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN-MK--------------------YFEDEVHNGNWDDVEKYLSGFTKVD 64 (1120)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-~~--------------------~~~~~i~~g~w~~~~~~~~~~~~~~ 64 (1120)
++++..-..++...-|.++...+++=..+..+ .. .=.-....|++++|+..+.+.....
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 45666677777777799999988876665543 11 1233467899999999998873333
Q ss_pred CcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 65 ~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
... ..+.+.+ =.. +...|+..+|+.++++-+. +.+.+.+-+..|..++
T Consensus 85 p~~--~~~~~~l-g~~---~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 85 PNN--VDCLEAC-AEM---QVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYY 132 (208)
T ss_dssp TTC--HHHHHHH-HHH---HHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred CCC--HHHHHHH-HHH---HHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH
Confidence 222 1122222 222 2446999999999997654 2334566666666544
No 394
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=37.55 E-value=1.7e+02 Score=24.02 Aligned_cols=100 Identities=15% Similarity=0.250 Sum_probs=51.6
Q ss_pred HHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHH
Q 001224 11 LILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1120)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll 85 (1120)
+..-++...-|.++...+++-.....+ ...-.-....|++++|+.++.......... ....+.+ -.. +.
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l-a~~---~~ 88 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNL-GNA---YY 88 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH---HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHH-HHH---HH
Confidence 333444445577777766654433222 222244467789999988887763322211 1122211 111 23
Q ss_pred ccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001224 86 DKHDRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1120)
Q Consensus 86 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1120)
..++.++|+..+++-+.- .+.++..+..|..
T Consensus 89 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 119 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL-DPNNAEAKQNLGN 119 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHH
Confidence 468888898888765432 2224444444443
No 395
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=37.08 E-value=1.6e+02 Score=25.68 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=8.6
Q ss_pred HhccCHHHHHHHhccc
Q 001224 45 VHNGNWDDVEKYLSGF 60 (1120)
Q Consensus 45 i~~g~w~~~~~~~~~~ 60 (1120)
...|+|++|+..+...
T Consensus 63 ~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 63 QSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3455555555555554
No 396
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=36.21 E-value=2.2e+02 Score=29.78 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=57.8
Q ss_pred HHHHHHHHhccCH---HHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhccc-ccccCHHHHH
Q 001224 38 MKYFEDEVHNGNW---DDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKV-FSTFNEELFK 113 (1120)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~-~~~~~~~~~~ 113 (1120)
+.+|++.|.+|+| =+|.+.+..+ +.-++.++++.+|+.+|..-..- |+.-....--
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi--------------------~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV--------------------AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH--------------------HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 6789999999999 7886666555 12223345555555555542111 1221334444
Q ss_pred HHHHHhccccccchhhhccCCCchHHHHHHHHHHHhhcccCCCcccccCCCCCcchHHHHHHHHHHHHHHH
Q 001224 114 EITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQ 184 (1120)
Q Consensus 114 ~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q~~ 184 (1120)
.|+.+|.-- . .. ..+.-...++.+|.+.+.. ++++ .| ....+|+.|++|-..
T Consensus 76 DL~~llvev-y---~~-~~~~~~~~~~~rL~~L~~~-~~~~------------~p-~r~~fi~~ai~WS~~ 127 (336)
T 3lpz_A 76 DLAVLLVDT-F---RQ-AGQRVDGASRGKLLGCLRL-FQPG------------EP-VRKRFVKEMIDWSKK 127 (336)
T ss_dssp HHHHHHHHH-H---HH-HTCCCCHHHHHHHHHHHTT-SCTT------------CH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-H---HH-cCCCCCHHHHHHHHHHHHh-CCCC------------Cc-HHHHHHHHHHHHHhh
Confidence 555544311 1 11 1111123556666655554 4441 22 347788888888876
No 397
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=36.03 E-value=1.8e+02 Score=32.70 Aligned_cols=30 Identities=10% Similarity=-0.072 Sum_probs=15.7
Q ss_pred hcCCCcc----HHHHHHHHhccCHHHHHHHhccc
Q 001224 31 ESGFFFN----MKYFEDEVHNGNWDDVEKYLSGF 60 (1120)
Q Consensus 31 Esg~~~~----~~~~~~~i~~g~w~~~~~~~~~~ 60 (1120)
+.|+..+ -..+......|++++|++++..+
T Consensus 133 ~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 133 AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455554 22344445556666666665555
No 398
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=34.75 E-value=1.1e+02 Score=27.69 Aligned_cols=73 Identities=10% Similarity=-0.017 Sum_probs=45.3
Q ss_pred HHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001224 42 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121 (1120)
Q Consensus 42 ~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1120)
......|+|++|+.++.+....+... ..++. ..=.-+...|++++|+.++++.+. +.+.++.-+..|..++..
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~P~~----~~~~~--~lg~~~~~~g~~~~Ai~~~~~al~-l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYDFYN----VDYIM--GLAAIYQIKEQFQQAADLYAVAFA-LGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHH--HHHHHHHHTTCHHHHHHHHHHHHH-HSSSCCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH--HHHHHHHHHccHHHHHHHHHHHHh-hCCCCcHHHHHHHHHHHH
Confidence 44567899999999999874443322 11211 112223457999999999997654 233456666666666543
No 399
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=34.58 E-value=2e+02 Score=23.90 Aligned_cols=108 Identities=10% Similarity=0.096 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccc-cCcccchhhHHHHHHHHHH
Q 001224 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYL 82 (1120)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~l 82 (1120)
..+-..++...-|.++...+++-.....+ ...-.-....|+|++|+.++...... +...........++...-.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 34444555555678888777765443332 22223446789999999998886322 1111000011222222222
Q ss_pred HHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001224 83 EALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1120)
Q Consensus 83 Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1120)
-+...|+.++|+.++++-+.- .+ +++....+..+
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~-~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAE-HR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CC-CHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh-CC-CHHHHHHHHHH
Confidence 235679999999999875442 22 44444444433
No 400
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=33.64 E-value=6.5e+02 Score=29.58 Aligned_cols=181 Identities=11% Similarity=0.020 Sum_probs=90.9
Q ss_pred CcEEEEEcCCCc--eeeeecCCCCCe-EEEEEecCCCc-----EEEEEeCC---CcEEEEEeec--ceeeEeecccccce
Q 001224 845 GKISLFNMMTFK--TMATFMPPPPAA-TFLAFHPQDNN-----IIAIGMDD---SSIQIYNVRV--DEVKSKLKGHSKRI 911 (1120)
Q Consensus 845 g~i~vwd~~~~~--~~~~~~~~~~~i-~~l~~sp~d~~-----~lasg~~d---g~v~vwd~~~--~~~~~~l~~h~~~V 911 (1120)
.+|+.|.+.+.. -...+.+....+ .....++ +++ .+++.+.+ ..+++.+... ++. ..+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC-
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc-
Confidence 458888887643 223344333333 3445556 444 24443322 3455555442 332 233222221
Q ss_pred EEEEEccCCCEEEEE----------eCCCCEEEEECCCccc-----ccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224 912 TGLAFSHALNVLVSS----------GADSQLCVWSSDGWEK-----QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 976 (1120)
Q Consensus 912 ~~l~~s~d~~~l~s~----------s~Dg~v~iWd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~ 976 (1120)
.+..+.++.+++.. ...+.|.+.++.++.. .....+-..... ..+..+.+..+.-++...
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~l~~~~~ 367 (711)
T 4hvt_A 293 -TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN----EVFNFISTTKDRVFLATY 367 (711)
T ss_dssp -EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT----EEEEEEEECSSCEEEEEE
T ss_pred -eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC----CeEEEEEEECCEEEEEEE
Confidence 23344566555533 1356788999887531 112221111111 356778888764333334
Q ss_pred eCC--eEEEEEcCCce-eeec-cccCCCCCCeeEEEECCCCcEE-EEEEc---CCcEEEEEcCCcce
Q 001224 977 HET--QLAIFETTKLE-CVKQ-WVPRESSAPITHATFSCDSQLV-YACFL---DATVCVFSAANLKL 1035 (1120)
Q Consensus 977 ~d~--~v~i~d~~~~~-~~~~-~~~~~h~~~v~~l~~s~dg~~l-~s~~~---Dg~v~iwd~~~~~~ 1035 (1120)
.++ .+.++++.++. .... +.... .+.+....+++++..+ ++.+. -+.+..+|+. ++.
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 555 57788877664 2222 22222 3457777777877644 44332 2678888877 443
No 401
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=33.08 E-value=1.4e+02 Score=32.79 Aligned_cols=96 Identities=10% Similarity=-0.002 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhcCCCc-----c---H----H-HHHHHHhccCHHHHHHHhcccc-----cccCcc
Q 001224 6 RELVFLILQFLDEEKFKETVHKLEQESGFFF-----N---M----K-YFEDEVHNGNWDDVEKYLSGFT-----KVDDNR 67 (1120)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~-----~---~----~-~~~~~i~~g~w~~~~~~~~~~~-----~~~~~~ 67 (1120)
+++++.|.++-.+--|.++...+++--.+.. + + . ...-....|+|++|+.+..+.. .+..+
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~- 366 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS- 366 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-
Confidence 4566666666666667777777666554422 1 1 1 2233456899999999888751 11111
Q ss_pred cchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccc
Q 001224 68 YSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVF 104 (1120)
Q Consensus 68 ~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~ 104 (1120)
-+. +...++..--+ +..+|++++|+.++++.+.-+
T Consensus 367 Hp~-~a~~l~nLa~~-~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 367 HPV-RGVQVMKVGKL-QLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp CHH-HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHH
T ss_pred ChH-HHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHH
Confidence 112 33333333322 344788888888888765543
No 402
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=32.77 E-value=1.4e+02 Score=35.50 Aligned_cols=106 Identities=7% Similarity=0.054 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhcC-hHHHHHHHHHhcCCCcc-H----HHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHH
Q 001224 7 ELVFLILQFLDEEK-FKETVHKLEQESGFFFN-M----KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1120)
Q Consensus 7 e~~rli~q~L~~~g-~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (1120)
|....+-..+.++| |.+|.+.+++-..+..+ . ..=.-....|++++|++++.+...+.... .. +.+ ..
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~-~~-a~~----nL 83 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-AD-AYS----NM 83 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHH----HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HH-HHH----HH
Confidence 44445555555665 66666666665554443 1 11122345677777777776652222111 01 111 11
Q ss_pred HHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 81 YLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
=.=+.+.|+.++|+..+++.+. +.+.+.+-+..|..++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~-l~P~~~~a~~~Lg~~~ 121 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ-INPAFADAHSNLASIH 121 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Confidence 1222345667777776665433 1222444445555443
No 403
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=31.59 E-value=4.6e+02 Score=27.20 Aligned_cols=167 Identities=10% Similarity=0.039 Sum_probs=89.9
Q ss_pred CCceEEEEEcCCCCeEEEEECCCeEEEEEcc---C------CceeeeeeeecccccCeEEE-EEcC--CCCceEEEEecC
Q 001224 426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH---G------GDEVRQHLEIDAHVGGVNDI-AFSH--PNKQLCVITCGD 493 (1120)
Q Consensus 426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~---~------~~~~~~~~~l~~h~~~V~~v-~~s~--d~~~~~l~s~s~ 493 (1120)
.+.+..+........|+..+..|.+.-.... . |..+.....+.. ...|.++ .... ++. +++.++.
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~-~e~Iv~~~~~~~~~~~~--~ll~~T~ 114 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDR-DEEIIKAIPINDFELNG--YFLFVTR 114 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCT-TCCEEEEEEESCTTSSC--EEEEEET
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCC-CCEEEEEEEecccCCCc--eEEEEeC
Confidence 3456666666677788888888987666542 1 221111112322 2345554 3432 244 5888899
Q ss_pred CCcEEEEECCC------CceeE--EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEE
Q 001224 494 DKTIKVWDATN------GAKQY--IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 565 (1120)
Q Consensus 494 d~~i~vwd~~~------~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 565 (1120)
+|.++...+.. +.-+. .+... +.+..+.... . ...++..+.+|.+..+....-... ......+..+
T Consensus 115 ~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~-~-~~~i~l~T~~G~~irf~~~ev~~~---gR~a~GV~~i 188 (323)
T 1wp5_A 115 NGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTD-G-MNELFLVTHNGYALWFDESEVSIV---GVRAAGVKGM 188 (323)
T ss_dssp TSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEEC-S-CSEEEEEETTSEEEEEEGGGSCBC---CSSCCCEECC
T ss_pred CCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeC-C-CCEEEEEeCCCcEEEEEHHHCccc---CCCCcCEEEE
Confidence 99999988742 12222 23322 4454444332 2 246777888888888876542111 1112234444
Q ss_pred EEcCCCCeEEecccccceeEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q 001224 566 AYSADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDS 611 (1120)
Q Consensus 566 ~~s~~g~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 611 (1120)
.+.++. .+..+..-+++. .+++.+..|..+..++..
T Consensus 189 ~L~~~d----------~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 189 NLKEGD----------YIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CCCTTC----------CEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EeCCCC----------EEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 433322 233332222334 788889999888877643
No 404
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=31.25 E-value=1.6e+02 Score=25.09 Aligned_cols=88 Identities=10% Similarity=-0.089 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHH
Q 001224 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1120)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l 82 (1120)
...+-..++...-|.++...+++-..+..+ ...-.-....|+|++|+.++.......... .. +.+. +-..
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~-~~~~-l~~~-- 86 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VK-AHFF-LGQC-- 86 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHH-HHHH--
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HH-HHHH-HHHH--
Confidence 344444555555688888877765444332 122233456899999998888763333221 11 2221 1222
Q ss_pred HHHccCCHHHHHHHHHhhc
Q 001224 83 EALDKHDRAKAVEILVKDL 101 (1120)
Q Consensus 83 Ell~~~~~~~a~~~l~~~l 101 (1120)
+...|+..+|+..+++-+
T Consensus 87 -~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 -QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp -HHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhhHHHHHHHHHHHH
Confidence 234688999988888643
No 405
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=31.20 E-value=5.9e+02 Score=28.74 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=46.0
Q ss_pred EECCCCcEEEEEEc-------CCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCC--CEEEEEeCCCcE
Q 001224 1008 TFSCDSQLVYACFL-------DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP--NEFALGLSDGGV 1078 (1120)
Q Consensus 1008 ~~s~dg~~l~s~~~-------Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~--~~l~s~~~Dg~v 1078 (1120)
.--.++++++.-+. ...|+|.|+.+|+++.++...... . ....+..+.+.-...|+ +.+..|...|.|
T Consensus 201 ~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~~~--~-~~~Gls~~~~~D~d~Dg~~D~~YaGDl~Gnl 277 (570)
T 3hx6_A 201 ARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTGRT--G-VPNGLSSPRLADNNSDGVADYAYAGDLQGNL 277 (570)
T ss_dssp EECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECCST--T-SCCCEEEEEEECTTSSSBCCEEEEEETTSEE
T ss_pred EEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCCCC--c-cCCccccceEEecCCCCceeEEEEEeCCCcE
Confidence 33347776553332 347999999999999988632110 0 00112212222121122 469999999999
Q ss_pred EEEecCCCCC
Q 001224 1079 HVFEPLESEG 1088 (1120)
Q Consensus 1079 ~vW~~~~~~~ 1088 (1120)
.=+|+.....
T Consensus 278 WRfDl~~~~~ 287 (570)
T 3hx6_A 278 WRFDLIAGKV 287 (570)
T ss_dssp EEEECSCSSC
T ss_pred EEEEcCCCCc
Confidence 8888887663
No 406
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=30.55 E-value=1.1e+02 Score=26.14 Aligned_cols=51 Identities=12% Similarity=-0.162 Sum_probs=26.4
Q ss_pred HHHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhccc
Q 001224 10 FLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGF 60 (1120)
Q Consensus 10 rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~ 60 (1120)
.+-..+++..-|.++...|++-.....+ ...=.-....|++++|+..+.+.
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 77 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555566666666555444332 11112234567777776666665
No 407
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=30.05 E-value=7.5 Score=32.80 Aligned_cols=38 Identities=8% Similarity=0.193 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHhccCHHHHHHHhccc
Q 001224 22 KETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60 (1120)
Q Consensus 22 ~~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~~~~~ 60 (1120)
-..+..+-+|||+.+++..+-..| +|+||++.+.+.++
T Consensus 35 Va~~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 35 IDRAIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 334455566899999887777766 49999998888775
No 408
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=29.55 E-value=1.2e+02 Score=25.92 Aligned_cols=72 Identities=7% Similarity=0.015 Sum_probs=44.3
Q ss_pred HHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001224 42 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120 (1120)
Q Consensus 42 ~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1120)
...+..|+|++|+..+.+........ ..+.+. +=.. +...|+..+|+..+++.+.- .+.+.+-+..|+.++.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~-lg~~---~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPER--EEAWRS-LGLT---QAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHH-HHHH---HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHH-HHHH---HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 56678999999999998874333222 112222 2222 23579999999999975442 3334555555555543
No 409
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=29.22 E-value=2.7e+02 Score=26.63 Aligned_cols=105 Identities=7% Similarity=0.008 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhcC-hHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHH
Q 001224 8 LVFLILQFLDEEK-FKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1120)
Q Consensus 8 ~~rli~q~L~~~g-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1120)
+...+...+...| |.++...+++-.....+ ...-.-....|++++|++++.+........ ..+.+. .-
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~----~a 132 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN--GDLFYM----LG 132 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS--HHHHHH----HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--HHHHHH----HH
Confidence 3333444444444 56666555543322221 122233456788888887777663222211 111111 11
Q ss_pred HHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 82 lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
.-++..|+.++|+..+++.+.- .+.+...+..++.+.
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh-CCccHHHHHHHHHHH
Confidence 1224467788888877765432 222344444444443
No 410
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=29.21 E-value=2.5e+02 Score=32.93 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=27.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 001224 591 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 620 (1120)
Q Consensus 591 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 620 (1120)
+..++++-+.|.++|+|++.+++++.....
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 467999999999999999999999988876
No 411
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=29.18 E-value=2.5e+02 Score=26.84 Aligned_cols=109 Identities=9% Similarity=-0.001 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHhcCCCcc-H----HHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHH
Q 001224 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-M----KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1120)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l 82 (1120)
...+-..++..--|.++...+++-..+..+ . ..=.-....|++++|+..+.+...+.... .. +.+.+ =..|+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~-a~~~l-g~~~~ 84 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-LG-GYMVL-SEAYV 84 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHHH-HHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HH-HHHHH-HHHHH
Confidence 344445556666689999999888777664 1 12234467899999999998873332221 11 22222 22222
Q ss_pred HH--------HccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001224 83 EA--------LDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120 (1120)
Q Consensus 83 El--------l~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1120)
.+ +..|+.++|+..+++-+.- .+.+..-+..|..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERV-NPRYAPLHLQRGLVYA 129 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 21 1128899999999876442 2334555555655543
No 412
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=28.94 E-value=2.3e+02 Score=28.70 Aligned_cols=94 Identities=9% Similarity=0.008 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhcCCCcc---H----HH---H-HHHHhccCHHHHHHHhccc-ccccCcccchhhHH
Q 001224 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---M----KY---F-EDEVHNGNWDDVEKYLSGF-TKVDDNRYSMKIFF 74 (1120)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~----~~---~-~~~i~~g~w~~~~~~~~~~-~~~~~~~~~~~~~~ 74 (1120)
++...+..++....|.++.+.+++.-..... . .. + .-....|++++|+.++.+. .......... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-QNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT-HHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH-HHH
Confidence 4556677788888899998888765433221 0 10 0 1225578999999987764 2111111111 234
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhhc
Q 001224 75 EIRKQKYLEALDKHDRAKAVEILVKDL 101 (1120)
Q Consensus 75 ~i~~~~~lEll~~~~~~~a~~~l~~~l 101 (1120)
.++...-.-+...|++++|+.++.+.+
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555667899999999998866
No 413
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=28.82 E-value=2.8e+02 Score=28.14 Aligned_cols=105 Identities=9% Similarity=-0.017 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcC--hHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHH
Q 001224 8 LVFLILQFLDEEK--FKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1120)
Q Consensus 8 ~~rli~q~L~~~g--~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (1120)
+...+...+...| |.++...+++-..+..+ ...-.-....|++++|++++.......... .. ..+. .
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~~~~----l 165 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC-HL-PMLY----I 165 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-SH-HHHH----H
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc-HH-HHHH----H
Confidence 3344444555555 55566666665554432 222233456677777777776652222111 01 1111 1
Q ss_pred HHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 81 YLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
-.-+...|+.++|+.++++-+.- .+.+...+..++.+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSI-APEDPFVMHEVGVVA 203 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh-CCCChHHHHHHHHHH
Confidence 12234467778888877765442 222444444444443
No 414
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=28.65 E-value=1.5e+02 Score=23.93 Aligned_cols=84 Identities=8% Similarity=0.019 Sum_probs=43.5
Q ss_pred HHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHcc-C
Q 001224 15 FLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK-H 88 (1120)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~-~ 88 (1120)
++...-|.++...+++-..+..+ ...-.-....|+|++|+.++.+........... .++...-.=+... |
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~l~~~~~~~~~ 91 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK----DVWAAKADALRYIEG 91 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH----HHHHHHHHHHTTCSS
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH----HHHHHHHHHHHHHhC
Confidence 34444577777766654333222 112233456788888888887763332220011 1112222223456 7
Q ss_pred CHHHHHHHHHhhcc
Q 001224 89 DRAKAVEILVKDLK 102 (1120)
Q Consensus 89 ~~~~a~~~l~~~l~ 102 (1120)
+.++|+.++++-+.
T Consensus 92 ~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 92 KEVEAEIAEARAKL 105 (112)
T ss_dssp CSHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHhh
Confidence 88888888886543
No 415
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.51 E-value=1.7e+02 Score=27.97 Aligned_cols=97 Identities=8% Similarity=0.139 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHH-HHHHHHhccccccchhhhccCCCchHHHHHHHHHHH
Q 001224 70 MKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELF-KEITQLLTLENFRENEQLSKYGDTKSARSIMLVELK 148 (1120)
Q Consensus 70 ~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~-~~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~ 148 (1120)
..+.-+|.+|-.+=-+++|++.+|..+|.+.+.. .. +...+ ..|..++...+. .+.-+.++. =..+.++|.
T Consensus 110 e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~-~~-s~~kLr~kL~~II~~Kd~-~H~~lqnFS-----y~~~~~ki~ 181 (235)
T 3bu8_A 110 ESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK-DP-TTQKLRNDLLNIIREKNL-AHPVIQNFS-----YETFQQKML 181 (235)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT-CG-GGHHHHHHHHHHHHHTCT-TSHHHHTCC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC-CC-CchHHHHHHHHHHhccCc-ccHHHHhcc-----HHHHHHHHH
Confidence 3488899999999999999999999999988775 22 33433 456666655433 334433331 244455555
Q ss_pred hhcccCCCcccccCCCCCcchHHHHHHHHHHHHHHHhc
Q 001224 149 KLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLC 186 (1120)
Q Consensus 149 ~~i~~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q~~~~ 186 (1120)
.++..-.- .++. .||+.|.+-+.++|
T Consensus 182 ~fve~~~~---------~a~~---FLL~~A~Kv~ks~~ 207 (235)
T 3bu8_A 182 RFLESHLD---------DAEP---YLLTMAKKALKSES 207 (235)
T ss_dssp HHHHTTSC---------CCCC---HHHHHHHHHTTTC-
T ss_pred HHHHHHhc---------ccch---HHHHHHHHHHhhcc
Confidence 54443110 1222 67777777777755
No 416
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=28.44 E-value=34 Score=27.56 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.5
Q ss_pred CCcchHHHHHHHHHHHhhc
Q 001224 1 MSSLSRELVFLILQFLDEE 19 (1120)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~ 19 (1120)
|+..++++...|+|||++.
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6777899999999999864
No 417
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.21 E-value=1.6e+02 Score=25.75 Aligned_cols=21 Identities=24% Similarity=-0.001 Sum_probs=16.1
Q ss_pred HHHHHHccCCHHHHHHHHHhh
Q 001224 80 KYLEALDKHDRAKAVEILVKD 100 (1120)
Q Consensus 80 ~~lEll~~~~~~~a~~~l~~~ 100 (1120)
..-|++..++..+|.+++++-
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 345667789999999999853
No 418
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.15 E-value=1.5e+02 Score=26.83 Aligned_cols=21 Identities=24% Similarity=-0.001 Sum_probs=16.2
Q ss_pred HHHHHHccCCHHHHHHHHHhh
Q 001224 80 KYLEALDKHDRAKAVEILVKD 100 (1120)
Q Consensus 80 ~~lEll~~~~~~~a~~~l~~~ 100 (1120)
..-|++..++..+|.+|+++-
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 345667789999999999853
No 419
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=28.05 E-value=1.2e+02 Score=26.12 Aligned_cols=71 Identities=7% Similarity=0.017 Sum_probs=44.4
Q ss_pred HHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001224 43 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120 (1120)
Q Consensus 43 ~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1120)
.....|+|++|++.+.+........ ..++-..-.=++..|+..+|+..+.+-+. +.+.+..-+..++.++.
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIR-LDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHH
Confidence 3567899999999998863332222 11222222233457999999999997655 23345566666666554
No 420
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=27.70 E-value=1.6e+02 Score=26.44 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=53.9
Q ss_pred HHHHHHhhcChHHHHHHHHHhcCCCcc-HH----HHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHH
Q 001224 11 LILQFLDEEKFKETVHKLEQESGFFFN-MK----YFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1120)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Esg~~~~-~~----~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll 85 (1120)
+-..++..--|.++...+++=..+..+ .. .=.-....|+|++|++.+.+...+.... .. +.|.+ =.=++
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~-~~~~l----g~~~~ 115 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YT-PVFHT----GQCQL 115 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CH-HHHHH----HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cH-HHHHH----HHHHH
Confidence 334444455588888888877666554 11 1134467899999999998874333222 11 33322 22234
Q ss_pred ccCCHHHHHHHHHhhcc
Q 001224 86 DKHDRAKAVEILVKDLK 102 (1120)
Q Consensus 86 ~~~~~~~a~~~l~~~l~ 102 (1120)
..|+.++|+..+++-+.
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 57999999999997654
No 421
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=27.54 E-value=5.3e+02 Score=26.68 Aligned_cols=238 Identities=8% Similarity=0.060 Sum_probs=122.7
Q ss_pred cCCCEEEEEe-CCcEEEEEcCCCce----eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec---------ce
Q 001224 834 KNDSYVMSAS-GGKISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---------DE 899 (1120)
Q Consensus 834 ~d~~~l~~~s-dg~i~vwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---------~~ 899 (1120)
|+..++++.+ +|.|+--.+...+. -..++ ....+..+.... ....|+..+..|.++-+.... |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 4455666666 78888776542211 11223 233455554444 455666778888877665532 22
Q ss_pred eeEe---ecccccceEEEEEcc---CCCEEEEEeCCCCEEEEECCCccccc----ceeeeccCCCCCCCCCCcEEEE-cc
Q 001224 900 VKSK---LKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQK----NRFLQIPTGRTPTAQSDTRVQF-HQ 968 (1120)
Q Consensus 900 ~~~~---l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~v~iWd~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~f-sp 968 (1120)
.+.. +. ....|.++..-+ ++.+|+.++.+|.++--.+....... ...+....+ ..+..+.. ..
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 1111 22 233466553333 26689999999999999876433211 111222222 23333333 34
Q ss_pred CCcEEEEEeCCeEEEEEcCCcee-------eeccccCCCCCCeeEEEECCCCc-EEEEEEcCCcEEEEEcCCcceeee--
Q 001224 969 DQIHFLVVHETQLAIFETTKLEC-------VKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKLRCR-- 1038 (1120)
Q Consensus 969 dg~~la~~~d~~v~i~d~~~~~~-------~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~Dg~v~iwd~~~~~~~~~-- 1038 (1120)
+...++.+.+|.+..+....-.. ++.+.... ...|.++...+++. .|++.+..|..+..++.......+
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~ 233 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAK 233 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTS
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCC
Confidence 44555567888888887753221 12222211 45566665444445 788888899988887765322211
Q ss_pred --eCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1039 --INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1039 --~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
......+... +. ..+.+.... +...++..+..|.+.-..+.+
T Consensus 234 kGv~~~~~~~~~--~~--~l~~~~~v~-~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 234 RGVVILRELKAN--PH--RISGFVVAQ-DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCEECSCCCSSS--CC--CEEEEEEEC-TTCEEEEEETTSCEEEEEGGG
T ss_pred CCEECeeecCCC--Cc--eEEEEEEeC-CCCeEEEEeCCCeEEEEEhhh
Confidence 0001111110 11 112222222 245666777788777666654
No 422
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=27.46 E-value=2.6e+02 Score=23.04 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=44.0
Q ss_pred HHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHcc
Q 001224 13 LQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87 (1120)
Q Consensus 13 ~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~ 87 (1120)
..++...-|.++...+++-.....+ ...-.-....|+|++|++++.......... ..+.+.+ =. =+...
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~-~~---~~~~~ 93 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRM-GL---ALSSL 93 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HH---HHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHH-HH---HHHHh
Confidence 3334444477777766654333221 222233466888888888887763332221 1121111 11 12346
Q ss_pred CCHHHHHHHHHhhcc
Q 001224 88 HDRAKAVEILVKDLK 102 (1120)
Q Consensus 88 ~~~~~a~~~l~~~l~ 102 (1120)
++..+|+.++.+-+.
T Consensus 94 ~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 94 NKHVEAVAYYKKALE 108 (131)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888888876543
No 423
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=27.29 E-value=2e+02 Score=34.18 Aligned_cols=104 Identities=7% Similarity=0.010 Sum_probs=64.1
Q ss_pred HHHHHHhhcC-hHHHHHHHHHhcCCCcc-HH----HHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHH
Q 001224 11 LILQFLDEEK-FKETVHKLEQESGFFFN-MK----YFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1120)
Q Consensus 11 li~q~L~~~g-~~~s~~~L~~Esg~~~~-~~----~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEl 84 (1120)
-+-..|.++| |.+|.+.+++-..+..+ .. .=.-....|++++|++.+.+...+.... .. +.+. .=.=+
T Consensus 48 nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-~~-a~~~----Lg~~~ 121 (723)
T 4gyw_A 48 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-AD-AHSN----LASIH 121 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHH----HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HH-HHHH----HHHHH
Confidence 3445555555 78888888776665554 11 1133466899999999998863332221 11 2221 12223
Q ss_pred HccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001224 85 LDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121 (1120)
Q Consensus 85 l~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1120)
.+.|+.++|+..+++.+. +.+.+.+-+..|..++..
T Consensus 122 ~~~g~~~eAi~~~~~Al~-l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 122 KDSGNIPEAIASYRTALK-LKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-hCCCChHHHhhhhhHHHh
Confidence 457999999999998655 244466777777776643
No 424
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=27.14 E-value=2.4e+02 Score=26.91 Aligned_cols=107 Identities=13% Similarity=0.034 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhcC-hHHHHHHHHHhcCCCcc-H----HHHHHHHhc-----------cCHHHHHHHhcccccccCcccc
Q 001224 7 ELVFLILQFLDEEK-FKETVHKLEQESGFFFN-M----KYFEDEVHN-----------GNWDDVEKYLSGFTKVDDNRYS 69 (1120)
Q Consensus 7 e~~rli~q~L~~~g-~~~s~~~L~~Esg~~~~-~----~~~~~~i~~-----------g~w~~~~~~~~~~~~~~~~~~~ 69 (1120)
+....+-..+...| |.++...+++=..+..+ . ..=.-.... |++++|+..+.+........
T Consensus 40 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-- 117 (217)
T 2pl2_A 40 EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-- 117 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--
Confidence 33444444555555 77777777765555443 1 111112233 99999999998873332221
Q ss_pred hhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001224 70 MKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121 (1120)
Q Consensus 70 ~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1120)
..+.+ .+=.. +...|+.++|+..+++-+.-- .+++-+..|+.++..
T Consensus 118 ~~~~~-~lg~~---~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 118 APLHL-QRGLV---YALLGERDKAEASLKQALALE--DTPEIRSALAELYLS 163 (217)
T ss_dssp HHHHH-HHHHH---HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHH---HHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHH
Confidence 11222 11222 345799999999999866543 466666677766543
No 425
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=26.86 E-value=3.3e+02 Score=24.25 Aligned_cols=102 Identities=16% Similarity=0.044 Sum_probs=56.0
Q ss_pred HHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHH
Q 001224 11 LILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1120)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll 85 (1120)
+...++...-|.++...+++-.....+ ...-.-....|++++|++++.......... ..+.+ ..-.-+.
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~----~~a~~~~ 87 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN--VKVAT----VLGLTYV 87 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHH----HHHHHHH
Confidence 333444555577777777665544332 222344567899999999998873332221 11211 1112234
Q ss_pred ccCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 86 DKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 86 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
..|+..+|+..+++.+.- .+.+...+..++.++
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVAL 120 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHH
Confidence 468899999998865442 222444444554443
No 426
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=26.85 E-value=1.3e+02 Score=34.11 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=41.4
Q ss_pred CCeEEEEEecCCCcEEEEEeC------------CCcEEEEEeecceeeEeeccc-ccceEEEEEccCCCEEEEEe
Q 001224 866 PAATFLAFHPQDNNIIAIGMD------------DSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSG 927 (1120)
Q Consensus 866 ~~i~~l~~sp~d~~~lasg~~------------dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s 927 (1120)
.....|+|++ +|.+.+..+. ...|..++..++++...+.+. ..+++.++|+||++.|..+-
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3467899999 7776663221 114666666667766656543 46799999999999887653
No 427
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=26.59 E-value=2.7e+02 Score=22.97 Aligned_cols=102 Identities=12% Similarity=0.219 Sum_probs=54.7
Q ss_pred HHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHH
Q 001224 11 LILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1120)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll 85 (1120)
+..-++...-|.++...+++-.....+ ...-.-....|++++|+.++.......... ..+.+.+ -. -+.
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l-~~---~~~ 80 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNL-GN---AYY 80 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HH---HHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHH-HH---HHH
Confidence 344445555577777776653322221 122234467899999999988873332221 1122211 11 134
Q ss_pred ccCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 86 DKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 86 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
..|+.++|+..+.+-+.. .+.+...+..++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAY 113 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHH
Confidence 578999999999875442 222344444554443
No 428
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=26.52 E-value=2.9e+02 Score=23.24 Aligned_cols=79 Identities=8% Similarity=0.087 Sum_probs=40.2
Q ss_pred EEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCcee
Q 001224 912 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 991 (1120)
Q Consensus 912 ~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~ 991 (1120)
..+.+..||.+++... ++ +|...+... ..-..+.+..+|.+++...++...+|...+..
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~~----------------~~~~~l~l~~dGNLVl~~~~~~~~vW~S~t~~- 80 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHGR----------------GVDCTLRLNNRGQLEIHSANSNTPVWVYPRSV- 80 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTTS----------------CSSCEEEECTTSCEEEECSSCSSCSEEESSSC-
T ss_pred EEEEEccCCeEEEECC-CC---EEECCcccC----------------CcCEEEEEcCCCcEEEEeCCCCEEEEEecccc-
Confidence 4566667777666432 22 777554210 01245677778877766444444466433210
Q ss_pred eeccccCCCCCCeeEEEECCCCcEEEE
Q 001224 992 VKQWVPRESSAPITHATFSCDSQLVYA 1018 (1120)
Q Consensus 992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s 1018 (1120)
........+.+-+||.+++.
T Consensus 81 -------~~~~~~~~l~Lq~dGNlvly 100 (111)
T 3mez_A 81 -------NTVRGNYAATLGPDQHVTIY 100 (111)
T ss_dssp -------CCCSSCCEEEECTTSCEEEE
T ss_pred -------CCCCcCEEEEECCCCeEEEe
Confidence 01112344556666666554
No 429
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=26.45 E-value=2.3e+02 Score=27.81 Aligned_cols=105 Identities=8% Similarity=0.002 Sum_probs=52.3
Q ss_pred HHHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHH
Q 001224 10 FLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1120)
Q Consensus 10 rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEl 84 (1120)
++-.-++...-|.++...+++-.....+ ...-.-....|+|++|++++......+... . .....+...-.-+
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~-~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT--K-AKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT--T-CCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch--h-HHHHHHHHHHHHH
Confidence 3333444444577777777665444332 223345567888888888887763322111 1 2111122222222
Q ss_pred HccCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001224 85 LDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1120)
Q Consensus 85 l~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1120)
...|+.++|+..+++-+.- .+.+...+..++.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~ 117 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGSY 117 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhc-CcccHHHHHHHHHH
Confidence 3457777777777764431 22233444444443
No 430
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=26.37 E-value=38 Score=26.53 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=26.5
Q ss_pred CcchHHHHHHHHHHHhhcChH-HHHHHHHHhcCCCcc
Q 001224 2 SSLSRELVFLILQFLDEEKFK-ETVHKLEQESGFFFN 37 (1120)
Q Consensus 2 ~~~~~e~~rli~q~L~~~g~~-~s~~~L~~Esg~~~~ 37 (1120)
+.-++.+...|+..|.+.||- .+...+.++.|+..+
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 63 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 63 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 445678999999999999984 455566666676553
No 431
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=26.11 E-value=3.1e+02 Score=24.85 Aligned_cols=112 Identities=8% Similarity=-0.067 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHhhcC-hHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHH
Q 001224 1 MSSLSRELVFLILQFLDEEK-FKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFF 74 (1120)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~ 74 (1120)
+.+-..+....+...+..+| +.++...+++-.....+ ...-......|+++.|++.+.......... .
T Consensus 34 ~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~------~ 107 (184)
T 3vtx_A 34 ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------A 107 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------h
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 75 EIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 75 ~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
..+...-.-+...|+.++|+..+++.+.- .+.+..-+..|+.+.
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHH
No 432
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=25.53 E-value=6.3e+02 Score=26.84 Aligned_cols=200 Identities=10% Similarity=0.132 Sum_probs=95.8
Q ss_pred CCeEEEEECCCeEEEEEccCCcee--------eeeeeecc-cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc--
Q 001224 438 GSLFGVAYSRHIVQIYSYHGGDEV--------RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-- 506 (1120)
Q Consensus 438 g~~las~~~dg~v~iwd~~~~~~~--------~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~-- 506 (1120)
....+.-..||.|..|-.....++ .....+.. ....+..++.+.-.. ..+.-..||.|..|-....-
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~--h~~al~~~G~v~~wG~n~~GqL 139 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGK--HCLALSSEGEVYSWGEAEDGKL 139 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCS--EEEEEETTSCEEEEECCGGGTT
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCC--eEEEEcCCCCEEEEeCCCCCcC
Confidence 445556677888888865432111 11111221 122455566655555 45556778999999653210
Q ss_pred ---------eeEEeecc-ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224 507 ---------KQYIFEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 576 (1120)
Q Consensus 507 ---------~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 576 (1120)
....+... ...|..++. .. .+.+....||.|..|-......+-.-.. .. . ..| ..+.
T Consensus 140 G~g~~~~~~~p~~v~~l~~~~i~~va~---G~-~hs~alt~~G~v~~wG~n~~GqLG~~~~-~~-~----~~p---~~v~ 206 (389)
T 3kci_A 140 GHGNRSPCDRPRVIESLRGIEVVDVAA---GG-AHSACVTAAGDLYTWGKGRYGRLGHSDS-ED-Q----LKP---KLVE 206 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEE---CS-SEEEEEETTSCEEEEECCGGGTTCSSSC-CC-E----EEE---EECG
T ss_pred CCCCCccCcCCeEecccCCCeEEEEEe---Cc-CeEEEEeCCCeEEEeCCCCCCCcCCCCC-cc-c----ccc---eEec
Confidence 01112211 125666653 22 3555667799999996544222110000 00 0 000 1111
Q ss_pred cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC-c---------ee-EEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001224 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-Q---------LL-TSIDADGGLPASPRIRFNKDGCLLAVSTND 645 (1120)
Q Consensus 577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~---------~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 645 (1120)
......+..++......+.++...+|.|+.|-.... + .. ..+.... ...|..++. -....++-..+
T Consensus 207 ~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~v~~--G~~hs~alt~~ 283 (389)
T 3kci_A 207 ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT-GLGVVKVEC--GSQFSVALTKS 283 (389)
T ss_dssp GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT-TSCEEEEEE--ETTEEEEEETT
T ss_pred ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC-CCcEEEEeC--CCCEEEEEeCC
Confidence 112223444444433356777788999999964321 1 11 1111111 112333333 33455556789
Q ss_pred CcEEEEEccC
Q 001224 646 NGIKILATSD 655 (1120)
Q Consensus 646 g~i~iwd~~~ 655 (1120)
|.|..|-...
T Consensus 284 G~v~~wG~n~ 293 (389)
T 3kci_A 284 GAVYTWGKGD 293 (389)
T ss_dssp SCEEEEECCG
T ss_pred CeEEEEeCCC
Confidence 9999997543
No 433
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=25.42 E-value=3.7e+02 Score=25.88 Aligned_cols=16 Identities=0% Similarity=-0.294 Sum_probs=7.7
Q ss_pred HhccCHHHHHHHhccc
Q 001224 45 VHNGNWDDVEKYLSGF 60 (1120)
Q Consensus 45 i~~g~w~~~~~~~~~~ 60 (1120)
...|+|++|++++...
T Consensus 82 ~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3445555555544443
No 434
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=25.20 E-value=2.2e+02 Score=25.13 Aligned_cols=88 Identities=6% Similarity=-0.019 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHH
Q 001224 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1120)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lE 83 (1120)
..+-..++...-|.++...+++-..+..+ ...-.-....|+|++|+.++.......... .. +.+. +=..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~~~~-~a~~--- 90 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IK-GYYR-RAAS--- 90 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHH-HHHH---
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HH-HHHH-HHHH---
Confidence 33444555666688888887765444332 222234467899999999988863332221 11 2111 1112
Q ss_pred HHccCCHHHHHHHHHhhcc
Q 001224 84 ALDKHDRAKAVEILVKDLK 102 (1120)
Q Consensus 84 ll~~~~~~~a~~~l~~~l~ 102 (1120)
+...|+..+|+..+++-+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3456899999999987544
No 435
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.74 E-value=2.4e+02 Score=31.10 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhc-ChHHHHHHHH---HhcCCCcc--------HHHHHHHHhccCHHHHHHHhcccc--cccCcccchhhH
Q 001224 8 LVFLILQFLDEE-KFKETVHKLE---QESGFFFN--------MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKIF 73 (1120)
Q Consensus 8 ~~rli~q~L~~~-g~~~s~~~L~---~Esg~~~~--------~~~~~~~i~~g~w~~~~~~~~~~~--~~~~~~~~~~~~ 73 (1120)
+.+.+.....+. .|.+++..|+ .|+.-..+ ...+|-.+..+||..|..++.+.. ....... ..+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~-~~lk 217 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY-ESLK 217 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC-HHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc-HHHH
Confidence 333444444444 5999987664 58876654 567888999999999999998862 1111111 1122
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhhcc
Q 001224 74 FEIRKQKYLEALDKHDRAKAVEILVKDLK 102 (1120)
Q Consensus 74 ~~i~~~~~lEll~~~~~~~a~~~l~~~l~ 102 (1120)
-.+|.+.-.=....+++.+|.+++.+-+.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33333332233556888888887776543
No 436
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=24.65 E-value=1.2e+02 Score=24.63 Aligned_cols=54 Identities=7% Similarity=0.127 Sum_probs=34.1
Q ss_pred HHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcc
Q 001224 43 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLK 102 (1120)
Q Consensus 43 ~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~ 102 (1120)
-....|+|++|+.++.+........ .. + +..+=..| ...|+.++|+..+++.+.
T Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~-~~-a-~~~lg~~~---~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELVETDPDY-VG-T-YYHLGKLY---ERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC-TH-H-HHHHHHHH---HHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc-HH-H-HHHHHHHH---HHcCCHHHHHHHHHHHHh
Confidence 4467899999999998874333222 11 2 22222333 447899999999987543
No 437
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=24.46 E-value=1.3e+02 Score=26.91 Aligned_cols=101 Identities=9% Similarity=0.004 Sum_probs=56.5
Q ss_pred HHhhcChHHHHHHHHHhcCCCcc-H----HHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCC
Q 001224 15 FLDEEKFKETVHKLEQESGFFFN-M----KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHD 89 (1120)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~ 89 (1120)
|+...-|.+|...+++=..+..+ . ..=.-....|++++|+..+.....+.... .. +.+.+ =..| +..++
T Consensus 41 y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~-~~~~l-a~~~---~~~~~ 114 (150)
T 4ga2_A 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ-KD-LVLKI-AELL---CKNDV 114 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHHH-HHHH---HHHCS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC-HH-HHHHH-HHHH---HHcCC
Confidence 34445588888888877666554 1 11233467899999999998873333222 11 22222 1222 33566
Q ss_pred HHHHHH-HHHhhcccccccCHHHHHHHHHHhccc
Q 001224 90 RAKAVE-ILVKDLKVFSTFNEELFKEITQLLTLE 122 (1120)
Q Consensus 90 ~~~a~~-~l~~~l~~~~~~~~~~~~~l~~ll~~~ 122 (1120)
..+|.. ++++.+. +.+.++.-+.....++...
T Consensus 115 ~~~aa~~~~~~al~-l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 115 TDGRAKYWVERAAK-LFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp SSSHHHHHHHHHHH-HSTTCHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHh
Confidence 655554 4554333 3334667777777766543
No 438
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=24.31 E-value=1.6e+02 Score=24.86 Aligned_cols=73 Identities=7% Similarity=-0.000 Sum_probs=44.8
Q ss_pred HHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001224 42 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121 (1120)
Q Consensus 42 ~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1120)
......|+|++|+.++.+........ ..++...-.-++..|+..+|+..+++-+.- .+.+..-+..++.++..
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence 34578899999999998863333222 112222222334579999999999976542 33355666666665543
No 439
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=24.27 E-value=2.6e+02 Score=23.14 Aligned_cols=85 Identities=12% Similarity=0.198 Sum_probs=48.3
Q ss_pred HHHHHHhhc-ChHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHH
Q 001224 11 LILQFLDEE-KFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1120)
Q Consensus 11 li~q~L~~~-g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEl 84 (1120)
.+.+.+... .+.++...+++-.....+ ...-.-....|+|++|++++.......... ..+.+.+ -.. +
T Consensus 40 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l-a~~---~ 113 (136)
T 2fo7_A 40 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNL-GNA---Y 113 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH---H
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHH-HHH---H
Confidence 334444444 477777777664433222 223344577899999999998863332221 1122221 111 2
Q ss_pred HccCCHHHHHHHHHhhc
Q 001224 85 LDKHDRAKAVEILVKDL 101 (1120)
Q Consensus 85 l~~~~~~~a~~~l~~~l 101 (1120)
...|+..+|+..+++-+
T Consensus 114 ~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 114 YKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HTTTCHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHH
Confidence 45799999999988643
No 440
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=24.05 E-value=6e+02 Score=26.04 Aligned_cols=236 Identities=9% Similarity=0.060 Sum_probs=121.4
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCceeee---------ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-------
Q 001224 835 NDSYVMSAS-GGKISLFNMMTFKTMAT---------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------- 897 (1120)
Q Consensus 835 d~~~l~~~s-dg~i~vwd~~~~~~~~~---------~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~------- 897 (1120)
+..++++.+ +|.|+--.+.+.+..+. ++ ....+..+.... ....|+..+..|.++-+....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 445566666 78888777655332211 22 223344444444 455666677888877665432
Q ss_pred --ceeeE---eecccccceEEEEEc---cCCCEEEEEeCCCCEEEEECCCccccc---ceeeeccCCCCCCCCCCcEEEE
Q 001224 898 --DEVKS---KLKGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDGWEKQK---NRFLQIPTGRTPTAQSDTRVQF 966 (1120)
Q Consensus 898 --~~~~~---~l~~h~~~V~~l~~s---~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~f 966 (1120)
|..+. .+. ....|.++..- .++.+++.++.+|.++--.+....... ...++...+ ..+..+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-----d~lv~~~~ 153 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-----DELIGVDL 153 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-----CCEEEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-----CEEEEEEE
Confidence 22211 122 33456665432 356789999999999998876432211 111222222 23333333
Q ss_pred -ccCCcEEEEEeCCeEEEEEcCCceee-------eccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeee
Q 001224 967 -HQDQIHFLVVHETQLAIFETTKLECV-------KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1038 (1120)
Q Consensus 967 -spdg~~la~~~d~~v~i~d~~~~~~~-------~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~ 1038 (1120)
..+...++.+.+|.+..++...-... ..+.... ...|.++....++..|++.+..|.++-.++.......+
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~R 232 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE-GDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 232 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCT
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC-CCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCC
Confidence 44455556678888888876432221 1122211 45677776666667788889999999888754332211
Q ss_pred ----eCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224 1039 ----INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus 1039 ----~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
..... +..+ ...+ +.+.... +...++..+.+|.+.-..+.+
T Consensus 233 g~kG~~~~~-~~~~--~~~l--v~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 233 ATKGVISIK-VTER--NGLV--VGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TSCCEESSC-CCTT--TCSE--EEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCEEeeE-ecCC--CCeE--EEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 00001 1111 1112 2333323 235566777788877666654
No 441
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=24.00 E-value=50 Score=32.63 Aligned_cols=104 Identities=9% Similarity=0.150 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHhcCCCccHHHHHHHHhccC---HH---------HHHHHhccc-ccccCcccchhhHH
Q 001224 8 LVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGN---WD---------DVEKYLSGF-TKVDDNRYSMKIFF 74 (1120)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Esg~~~~~~~~~~~i~~g~---w~---------~~~~~~~~~-~~~~~~~~~~~~~~ 74 (1120)
+|+-+++||++.|+. +=+-+-+|-.-++..+++.+-.|. ++ .+-.+|... ..+++-- +.+
T Consensus 40 iv~~~i~~i~~~gl~---eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLPePL----l~~ 112 (229)
T 3iug_A 40 VLQSCTAFIERYGIV---DGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPL----LTY 112 (229)
T ss_dssp HHHHHHHHHHHHCCS---TTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCSSCT----TCT
T ss_pred HHHHHHHHHHHcCCC---CCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCCCCC----cCH
Confidence 677788999999862 233333443435888888887763 11 121111111 1122222 112
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 75 EIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 75 ~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
.+| ..|++.....+.++.+..++.-+..|-..+...+..|..+|
T Consensus 113 ~ly-~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L 156 (229)
T 3iug_A 113 QLY-EKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHL 156 (229)
T ss_dssp TTH-HHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 222 34566666666666666666555544433455555555544
No 442
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=23.75 E-value=1.5e+02 Score=25.98 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=44.3
Q ss_pred HHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001224 42 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120 (1120)
Q Consensus 42 ~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1120)
......|+|++|+.++.......... .. +.+. +=.. +...|++++|+.++++-+.- .+.++.-+..++.++.
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~-~~~~-lg~~---~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLDHYD-AR-YFLG-LGAC---RQSLGLYEQALQSYSYGALM-DINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHH-HHHH---HHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhCCcc-HH-HHHH-HHHH---HHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHH
Confidence 45578899999999999873333222 11 2221 1222 34579999999999976542 3335566666665554
No 443
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=23.73 E-value=1.7e+02 Score=28.13 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhcCCCc------c--HHHHHHHHhccCHHHHHHHhcccc-cccCcccchhhHHHH
Q 001224 6 RELVFLILQFLDEEKFKETVHKLEQESGFFF------N--MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEI 76 (1120)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~------~--~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~~i 76 (1120)
+....+-..++...-|.++...|++=..... + ...-......|+|++|+..+..+. ..|.......+.|.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3455666778888889999998886443211 1 222345567899999999999873 333332211133322
Q ss_pred HHHHHHH---------------HHccCCHHHHHHHHHhhccc
Q 001224 77 RKQKYLE---------------ALDKHDRAKAVEILVKDLKV 103 (1120)
Q Consensus 77 ~~~~~lE---------------ll~~~~~~~a~~~l~~~l~~ 103 (1120)
-..|.+ ++..|+.++|+..+++-+.-
T Consensus 85 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 85 -GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp -HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 222322 13457899999999976553
No 444
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.49 E-value=46 Score=19.31 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHhh
Q 001224 5 SRELVFLILQFLDE 18 (1120)
Q Consensus 5 ~~e~~rli~q~L~~ 18 (1120)
-+||++||-||-.+
T Consensus 4 MkDvlql~qQy~qs 17 (26)
T 1kdl_A 4 MKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 36888888887543
No 445
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=23.48 E-value=1.7e+02 Score=33.53 Aligned_cols=39 Identities=18% Similarity=0.074 Sum_probs=28.6
Q ss_pred eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEE
Q 001224 603 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 642 (1120)
Q Consensus 603 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 642 (1120)
.+.+.+..+++....+..... .+++.++|+||++.|++.
T Consensus 510 ~~~~~~~~~g~~~rf~~~P~g-aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 510 QMLCADPATGEIRRFMVGPIG-CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTT-CEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCC-ccCcCeeECCCCCEEEEE
Confidence 456667777777666665543 578999999999888765
No 446
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=23.43 E-value=2.5e+02 Score=27.08 Aligned_cols=17 Identities=12% Similarity=0.349 Sum_probs=10.1
Q ss_pred HHhccCHHHHHHHhccc
Q 001224 44 EVHNGNWDDVEKYLSGF 60 (1120)
Q Consensus 44 ~i~~g~w~~~~~~~~~~ 60 (1120)
....|+|++|+.++...
T Consensus 149 ~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 34556666666666655
No 447
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=23.12 E-value=3.1e+02 Score=29.11 Aligned_cols=70 Identities=10% Similarity=0.163 Sum_probs=39.4
Q ss_pred HHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001224 44 EVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120 (1120)
Q Consensus 44 ~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1120)
....|+|++|++++.+........ .. +.|.+ =.. +...+++++|+..|++.+.- .+.+......|..+..
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~-~~-a~~~l-g~~---~~~~g~~~eA~~~l~~Al~l-~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSN-TK-ALYRR-AQG---WQGLKEYDQALADLKKAQEI-APEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTC-HH-HHHHH-HHH---HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchh-HH-HHHHH-HHH---HHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 467899999988888763333221 11 22221 122 23468899999988875442 2234455555555443
No 448
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=22.51 E-value=2e+02 Score=21.96 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=38.7
Q ss_pred HHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001224 43 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1120)
Q Consensus 43 ~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1120)
.....|+|++|+.++.+........ .. +.+.+ -.-+...++.++|+..+++-+.- .+.+..-+..|..+
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~~~~l----~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELDPNN-AE-AWYNL----GNAYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHHH----HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCC-HH-HHHHH----HHHHHHHhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHH
Confidence 3466799999998888763332221 11 22221 11234578999999999875442 22344444444443
No 449
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.32 E-value=2e+02 Score=24.72 Aligned_cols=77 Identities=12% Similarity=0.005 Sum_probs=45.9
Q ss_pred HHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 40 YFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 40 ~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
.-......|+|++|+.++.......... . ....++...-.-++..+++++|+..+++.+.- .+.+..-+..++.++
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~ 109 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALGLDATP--Q-DQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYRRSQAL 109 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTSCCCH--H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHcccc--h-HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHHHHHHH
Confidence 3355678999999999999873332221 0 11222222222345679999999999875542 223455555666554
Q ss_pred c
Q 001224 120 T 120 (1120)
Q Consensus 120 ~ 120 (1120)
.
T Consensus 110 ~ 110 (148)
T 2dba_A 110 E 110 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 450
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=22.16 E-value=3.8e+02 Score=23.84 Aligned_cols=107 Identities=8% Similarity=-0.016 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhcC-hHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHH
Q 001224 7 ELVFLILQFLDEEK-FKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1120)
Q Consensus 7 e~~rli~q~L~~~g-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (1120)
++...+...+...| |.++...+++-.....+ ...-.-....|+|++|++++.......... ..+.+. +-..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~-~a~~ 119 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN--FNVRFR-LGVA 119 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHH-HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh--HHHHHH-HHHH
Confidence 34444455554555 77777777654333222 222344567899999999998873332221 112221 1122
Q ss_pred HHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001224 81 YLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120 (1120)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1120)
+...|+.++|+.++.+.+.- .+.+...+..++.+..
T Consensus 120 ---~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 120 ---LDNLGRFDEAIDSFKIALGL-RPNEGKVHRAIAFSYE 155 (186)
T ss_dssp ---HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred ---HHHcCcHHHHHHHHHHHHhc-CccchHHHHHHHHHHH
Confidence 24579999999999875543 2234555555555443
No 451
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=22.07 E-value=54 Score=26.06 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc
Q 001224 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN 37 (1120)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (1120)
.++.+-||++|++.| .++..|-++.|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 367788889999999 999999999999874
No 452
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.87 E-value=4.7e+02 Score=29.18 Aligned_cols=95 Identities=8% Similarity=-0.053 Sum_probs=60.6
Q ss_pred hHHHHHHHH--HhcCCCcc----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHH
Q 001224 21 FKETVHKLE--QESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAV 94 (1120)
Q Consensus 21 ~~~s~~~L~--~Esg~~~~----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~ 94 (1120)
+.++.+.++ .+.|+..| -..+.-....|++++|++++..+....-. +....|...-.-|. ..|+.++|.
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~--Pd~~tyn~lI~~~~---~~g~~~~A~ 160 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ--PRLRSYGPALFGFC---RKGDADKAY 160 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHH---HTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CccceehHHHHHHH---HCCCHHHHH
Confidence 455555554 47799888 34667788999999999999988332111 11144555444444 479999999
Q ss_pred HHHHhhcccccccCHHHHHHHHHHhc
Q 001224 95 EILVKDLKVFSTFNEELFKEITQLLT 120 (1120)
Q Consensus 95 ~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1120)
.++.+-...=..++...|..|-..+.
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99986432212226667766655443
No 453
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=21.21 E-value=9.2e+02 Score=27.20 Aligned_cols=227 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred cCCCeE------EEEEeCCC-----cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224 374 PVQQTL------LLVGTNVG-----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442 (1120)
Q Consensus 374 pdg~~l------la~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la 442 (1120)
|+|+.+ ++.|.-|| .|..|+....+... ..+-++...-.+|.-+|++
T Consensus 105 p~g~~~~y~~nd~sVgDLDGDG~~EiVv~~dp~n~~d~s--------------------~~g~tg~~~l~aY~ldG~~-- 162 (591)
T 2zux_A 105 PKGESYTYSANDASVGDVDGDGQYELILKWDPSNSKDNS--------------------QDGYTGDVLIDAYKLDGTK-- 162 (591)
T ss_dssp TTSCEECEEEEEEEEECSSSSSSCEEEEEEEETTCCCTT--------------------CCSCCCCCEEEEECTTSCE--
T ss_pred CCCcEeeeecCCCeEEecCCCCCEEEEEEECCccccccc--------------------ccCcCCCcEEEEEECCCCE--
Q ss_pred EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc--------------------------
Q 001224 443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT-------------------------- 496 (1120)
Q Consensus 443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~-------------------------- 496 (1120)
+|.+.-+..++ -..|-..+....|.-||+. =++....+++
T Consensus 163 ---------LW~idlg~ni~----aGa~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~Gp 228 (591)
T 2zux_A 163 ---------LWRINLGKNIR----AGAHYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGP 228 (591)
T ss_dssp ---------EEEEECCTTSC----CSTTSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSC
T ss_pred ---------EEEEcCCCCcc----cccccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCC
Q ss_pred --EEEEECCCCceeEEeeccccC-----------------eEEEeeccCCCceEEEEEe---cCCeEEEEecCCCCCcee
Q 001224 497 --IKVWDATNGAKQYIFEGHEAP-----------------VYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVD 554 (1120)
Q Consensus 497 --i~vwd~~~~~~~~~~~~h~~~-----------------v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~ 554 (1120)
|.|+|=.+|+.+.++.-.... ..+++..... ...++.+- .-..|..||....+....
T Consensus 229 EyL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~-~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~ 307 (591)
T 2zux_A 229 EYLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQ-RPSLIMTRGYYAKTMLVAYNFRDGKLSKL 307 (591)
T ss_dssp CEEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSS-SCEEEEEECCSSSCEEEEEEEETTEEEEE
T ss_pred cEEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCC-CceEEEeccccceeEEEEEECCCCceEEE
Q ss_pred eeCCC-------------CceeEEEEcCCCC-----------------eEEecccccceeEEEEcCC--CCEEEEEeCC-
Q 001224 555 YEAPG-------------RWCTTMAYSADGT-----------------RTYQGFRKRSLGVVQFDTT--KNRFLAAGDD- 601 (1120)
Q Consensus 555 ~~~~~-------------~~v~~~~~s~~g~-----------------~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d- 601 (1120)
..... +.+.-..+.-||+ ....-.+...+.+..+.|+ |-.++.+.++
T Consensus 308 W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~ 387 (591)
T 2zux_A 308 WTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDK 387 (591)
T ss_dssp EEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCT
T ss_pred EEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCC
Q ss_pred ---CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC
Q 001224 602 ---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 637 (1120)
Q Consensus 602 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 637 (1120)
.-..+.|..+|+.+................|.|+..
T Consensus 388 ~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~p 426 (591)
T 2zux_A 388 NAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYP 426 (591)
T ss_dssp TSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSS
T ss_pred CCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCC
No 454
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=21.10 E-value=1.9e+02 Score=24.30 Aligned_cols=72 Identities=7% Similarity=0.015 Sum_probs=44.3
Q ss_pred HHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001224 42 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120 (1120)
Q Consensus 42 ~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1120)
......|+|++|+.++.+........ . .++...-.-+...++.++|+.++++.+.- .+.+...+..++.+..
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~~~~--~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRNPKD--A----KLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTCTTC--H----HHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc--H----HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHHHHH
Confidence 44578999999999999873332221 1 11222222246679999999999976542 2235555666665543
No 455
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=20.85 E-value=1.8e+02 Score=25.78 Aligned_cols=72 Identities=10% Similarity=0.088 Sum_probs=44.3
Q ss_pred HHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001224 42 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120 (1120)
Q Consensus 42 ~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1120)
......|+|++|+.++.......... .. +.+. +=. =+...|+.++|+..+++-+.- .+.++.-+..|+.++.
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~-~~~~-lg~---~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDHYD-SR-FFLG-LGA---CRQAMGQYDLAIHSYSYGAVM-DIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHH-HHH---HHHHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcCccc-HH-HHHH-HHH---HHHHHhhHHHHHHHHHHHHhc-CCCCchHHHHHHHHHH
Confidence 45577899999999999873333222 11 2221 112 234579999999999976542 3335566666666554
No 456
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=20.83 E-value=5.5e+02 Score=24.48 Aligned_cols=108 Identities=13% Similarity=0.018 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhcC-hHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHH
Q 001224 7 ELVFLILQFLDEEK-FKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1120)
Q Consensus 7 e~~rli~q~L~~~g-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (1120)
++...+...+...| |.++.+.+++-.....+ ...-.-....|++++|++++......+... . ...++...
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~--~~~~~~~l 147 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP--E--RSRVFENL 147 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT--T--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc--c--cHHHHHHH
Confidence 33344444444444 66666666553332221 223344566788888888887763311111 1 01111111
Q ss_pred HHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224 81 YLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1120)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1120)
-.-++..|+.++|+.++++.+.- .+.+...+..|+.+.
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 148 GLVSLQMKKPAQAKEYFEKSLRL-NRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc-CcccHHHHHHHHHHH
Confidence 12234567788888888765432 222344444444443
No 457
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=20.60 E-value=4e+02 Score=26.77 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHhcCCCcc---HH-------HHH-HHHhccCHHHHHHHhcccccc-cCcccchhhHHH
Q 001224 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN---MK-------YFE-DEVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFE 75 (1120)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~-------~~~-~~i~~g~w~~~~~~~~~~~~~-~~~~~~~~~~~~ 75 (1120)
+...+..++....|.++...+++.-..... .. .+- -....|++++|+.++.+.... ....... ....
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-QNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-HHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-HHHH
Confidence 444566677777788888888776553321 11 011 123456888888888775221 1111111 1122
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhhcc
Q 001224 76 IRKQKYLEALDKHDRAKAVEILVKDLK 102 (1120)
Q Consensus 76 i~~~~~lEll~~~~~~~a~~~l~~~l~ 102 (1120)
++-..-.=+...|++++|+.++++.+.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333344557888888888887664
No 458
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=20.33 E-value=2.1e+02 Score=25.31 Aligned_cols=89 Identities=6% Similarity=-0.073 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhcC-hHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHH
Q 001224 7 ELVFLILQFLDEEK-FKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1120)
Q Consensus 7 e~~rli~q~L~~~g-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (1120)
++...+...+..+| |.++...+++=..+..+ ...-.-....|++++|+.++.+........ .....+-..
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~ 123 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD----KDAKMKYQE 123 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Confidence 33344444455555 77777777654444332 122234467899999999998873332222 111122222
Q ss_pred HHHHHccCCHHHHHHHHHh
Q 001224 81 YLEALDKHDRAKAVEILVK 99 (1120)
Q Consensus 81 ~lEll~~~~~~~a~~~l~~ 99 (1120)
...++..++..+|+..+.+
T Consensus 124 ~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 124 CNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccc
Confidence 3334457888889888774
No 459
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=20.20 E-value=2.1e+02 Score=30.65 Aligned_cols=90 Identities=7% Similarity=-0.001 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcC-hHHHHHHHHHhcCCCcc---HHHH--HHHHhccC-HHHHHHHhcccccccCcccchhhHHHHHHH
Q 001224 7 ELVFLILQFLDEEK-FKETVHKLEQESGFFFN---MKYF--EDEVHNGN-WDDVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1120)
Q Consensus 7 e~~rli~q~L~~~g-~~~s~~~L~~Esg~~~~---~~~~--~~~i~~g~-w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 79 (1120)
++.......|...| |.++.+.+++=..+..+ +-.. .-....|+ +++|+..+.+...+.... ...+..+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----YQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----HHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC----HHHHHHHH
Confidence 34444555566666 77777777665544443 1111 12234575 888888887763332221 11111111
Q ss_pred HHHHHHccCCHHHHHHHHHhhcc
Q 001224 80 KYLEALDKHDRAKAVEILVKDLK 102 (1120)
Q Consensus 80 ~~lEll~~~~~~~a~~~l~~~l~ 102 (1120)
. -+...|+..+|+.++++.|.
T Consensus 174 ~--~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 174 V--LVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp H--HHHHHTCCTTHHHHHHHHHH
T ss_pred H--HHHHccCHHHHHHHHHHHHH
Confidence 1 12223566666666665443
No 460
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=20.09 E-value=1.9e+02 Score=25.94 Aligned_cols=73 Identities=8% Similarity=0.000 Sum_probs=45.3
Q ss_pred HHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001224 42 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121 (1120)
Q Consensus 42 ~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1120)
......|+|++|++++.+........ . ..+..+= .-++..|++.+|+..+++-+.- .+.+..-+..|+.++..
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~~--~-~~~~~l~---~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPAN--P-IYLSNRA---AAYSASGQHEKAAEDAELATVV-DPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC--H-HHHHHHH---HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCcC--H-HHHHHHH---HHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 45578999999999999873333222 1 1122222 2234579999999999976542 33356666666666543
Done!