BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001225
         (1120 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
           From Human
          Length = 115

 Score = 32.3 bits (72), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 31/117 (26%)

Query: 259 WHKVWAVLKPGFLVL-----LEDPYNTRVLD-IIVFELLPTTNGKEGPGVYLASQVKGSN 312
           W + W VLKP  +       L+D     +LD     E LP  +GK               
Sbjct: 24  WTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGK--------------- 68

Query: 313 PLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAGLRPLEGWCHPHRFGSYAPPRG 369
             +  F V C +++ ++  ++  K +EW+ AI+           H  + GS  P  G
Sbjct: 69  --KCLFLVKCFDKTFEISASDKKKKQEWIQAIHST--------IHLLKLGSSGPSSG 115


>pdb|1N8T|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
           Rabbit Muscle
 pdb|1N8T|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
           Rabbit Muscle
          Length = 557

 Score = 29.6 bits (65), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 562 HDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPH-------HHMVLPHYMG 614
           H     +WG P  +  +H   +  H      P +  IP+   H       H ++L +++ 
Sbjct: 372 HQTGPIVWGEPGTN-GQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLA 430

Query: 615 RSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQE 655
           ++  + +  KSTEE +K+L      + +SP ED+  LLP +
Sbjct: 431 QTEAL-MKGKSTEEARKELQA----AGKSP-EDLMKLLPHK 465


>pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
           Complexed With An Inhibitor
 pdb|1IRI|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
           Complexed With An Inhibitor
 pdb|1IRI|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
           Complexed With An Inhibitor
 pdb|1IRI|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
           Complexed With An Inhibitor
 pdb|1JIQ|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
 pdb|1JIQ|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
 pdb|1JIQ|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
 pdb|1JIQ|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
 pdb|1NUH|A Chain A, The Crystal Structure Of Human Phosphoglucose Isomerase
           Complexed With 5-Phosphoarabinonate
          Length = 558

 Score = 29.6 bits (65), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 562 HDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPH-------HHMVLPHYMG 614
           H     +WG P  +  +H   +  H      P +  IP+   H       H ++L +++ 
Sbjct: 373 HQTGPIVWGEPGTN-GQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLA 431

Query: 615 RSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQE 655
           ++  + +  KSTEE +K+L      + +SP ED+  LLP +
Sbjct: 432 QTEAL-MRGKSTEEARKELQA----AGKSP-EDLERLLPHK 466


>pdb|1JLH|A Chain A, Human Glucose-6-Phosphate Isomerase
 pdb|1JLH|B Chain B, Human Glucose-6-Phosphate Isomerase
 pdb|1JLH|C Chain C, Human Glucose-6-Phosphate Isomerase
 pdb|1JLH|D Chain D, Human Glucose-6-Phosphate Isomerase
          Length = 558

 Score = 29.6 bits (65), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 562 HDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPH-------HHMVLPHYMG 614
           H     +WG P  +  +H   +  H      P +  IP+   H       H ++L +++ 
Sbjct: 373 HQTGPIVWGEPGTN-GQHAFYQLIHQGTEMIPCDFLIPVQTQHPIRKGLHHKILLANFLA 431

Query: 615 RSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQE 655
           ++  + +  KSTEE +K+L      + +SP ED+  LLP +
Sbjct: 432 QTEAL-MRGKSTEEARKELQA----AGKSP-EDLERLLPHK 466


>pdb|1DQR|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
           Glycolytic Enzyme That Moonlights As Neuroleukin,
           Autocrine Motility Factor, And Differentiation Mediator
 pdb|1DQR|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase, A
           Glycolytic Enzyme That Moonlights As Neuroleukin,
           Autocrine Motility Factor, And Differentiation Mediator
 pdb|1KOJ|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
           Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
 pdb|1KOJ|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
           Complexed With 5-Phospho-D-Arabinonohydroxamic Acid
          Length = 557

 Score = 29.6 bits (65), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 562 HDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPH-------HHMVLPHYMG 614
           H     +WG P  +  +H   +  H      P +  IP+   H       H ++L +++ 
Sbjct: 372 HQTGPIVWGEPGTN-GQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLA 430

Query: 615 RSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQE 655
           ++  + +  KSTEE +K+L      + +SP ED+  LLP +
Sbjct: 431 QTEAL-MKGKSTEEARKELQA----AGKSP-EDLMKLLPHK 465


>pdb|1G98|A Chain A, Crystal Structure Analysis Of Rabbit Phosphoglucose
           Isomerase Complexed With 5-Phosphoarabinonate, A
           Transition State Analogue
 pdb|1G98|B Chain B, Crystal Structure Analysis Of Rabbit Phosphoglucose
           Isomerase Complexed With 5-Phosphoarabinonate, A
           Transition State Analogue
 pdb|1HOX|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
           Complexed With Fructose-6-Phosphate
 pdb|1HOX|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
           Complexed With Fructose-6-Phosphate
 pdb|1HM5|A Chain A, Crystal Structure Analysis Of The Rabbit D-Glucose
           6-Phosphate Isomerase (No Ligand Bound)
 pdb|1HM5|B Chain B, Crystal Structure Analysis Of The Rabbit D-Glucose
           6-Phosphate Isomerase (No Ligand Bound)
 pdb|1XTB|A Chain A, Crystal Structure Of Rabbit Phosphoglucose Isomerase
           Complexed With Sorbitol-6-Phosphate
 pdb|1XTB|B Chain B, Crystal Structure Of Rabbit Phosphoglucose Isomerase
           Complexed With Sorbitol-6-Phosphate
          Length = 558

 Score = 29.6 bits (65), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 562 HDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPH-------HHMVLPHYMG 614
           H     +WG P  +  +H   +  H      P +  IP+   H       H ++L +++ 
Sbjct: 373 HQTGPIVWGEPGTN-GQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLA 431

Query: 615 RSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQE 655
           ++  + +  KSTEE +K+L      + +SP ED+  LLP +
Sbjct: 432 QTEAL-MKGKSTEEARKELQA----AGKSP-EDLMKLLPHK 466


>pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphoglucose
           IsomeraseNEUROLEUKINAUTOCRINE MOTILITY FACTORMATURATION
           FACTOR
          Length = 557

 Score = 29.6 bits (65), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 562 HDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPH-------HHMVLPHYMG 614
           H     +WG P  +  +H   +  H      P +  IP+   H       H ++L +++ 
Sbjct: 372 HQTGPIVWGEPGTN-GQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLA 430

Query: 615 RSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQE 655
           ++  + +  KSTEE +K+L      + +SP ED+  LLP +
Sbjct: 431 QTEAL-MRGKSTEEARKELQA----AGKSP-EDLERLLPHK 465


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,897,489
Number of Sequences: 62578
Number of extensions: 1440056
Number of successful extensions: 2804
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2801
Number of HSP's gapped (non-prelim): 11
length of query: 1120
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1011
effective length of database: 8,152,335
effective search space: 8242010685
effective search space used: 8242010685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)