Query 001225
Match_columns 1120
No_of_seqs 543 out of 2589
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 19:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02866 phospholipase D 100.0 3E-259 7E-264 2314.8 97.4 1063 46-1120 3-1068(1068)
2 KOG1329 Phospholipase D1 [Lipi 100.0 3E-174 6E-179 1542.9 54.8 831 57-1120 48-887 (887)
3 PLN02352 phospholipase D epsil 100.0 1E-100 3E-105 918.0 48.5 513 327-1024 125-702 (758)
4 PLN03008 Phospholipase D delta 100.0 2.5E-94 5.4E-99 863.2 52.7 546 327-1024 172-814 (868)
5 PLN02270 phospholipase D alpha 100.0 3.8E-87 8.3E-92 802.4 47.3 514 327-1024 143-753 (808)
6 PRK12452 cardiolipin synthetas 100.0 3.7E-48 8.1E-53 461.7 37.2 325 373-961 138-465 (509)
7 PRK01642 cls cardiolipin synth 100.0 1.8E-47 3.9E-52 454.4 37.4 321 373-961 114-439 (483)
8 PRK11263 cardiolipin synthase 100.0 2.8E-45 6E-50 426.4 35.4 319 372-961 5-327 (411)
9 COG1502 Cls Phosphatidylserine 100.0 2.6E-37 5.6E-42 362.5 35.1 331 373-960 58-393 (438)
10 PRK09428 pssA phosphatidylseri 100.0 1E-33 2.3E-38 332.1 35.1 356 373-960 23-394 (451)
11 PHA02820 phospholipase-D-like 100.0 2.4E-32 5.2E-37 319.4 33.6 329 384-960 25-361 (424)
12 PHA03003 palmytilated EEV memb 100.0 4.3E-32 9.4E-37 313.0 29.8 313 385-960 31-347 (369)
13 cd07297 PX_PLD2 The phosphoino 99.9 9.2E-28 2E-32 231.6 11.3 129 54-213 1-130 (130)
14 cd07296 PX_PLD1 The phosphoino 99.9 4E-23 8.6E-28 204.0 10.6 130 54-213 1-135 (135)
15 cd06895 PX_PLD The phosphoinos 99.9 6E-22 1.3E-26 198.9 11.6 136 55-213 3-140 (140)
16 cd01254 PH_PLD Phospholipase D 99.9 3.5E-21 7.6E-26 189.5 12.7 119 226-347 1-121 (121)
17 PRK05443 polyphosphate kinase; 99.7 2.8E-16 6E-21 192.8 26.3 134 384-586 347-494 (691)
18 TIGR03705 poly_P_kin polyphosp 99.7 3.9E-16 8.5E-21 190.6 23.0 132 384-585 338-484 (672)
19 cd00138 PLDc Phospholipase D. 99.6 1.4E-14 3E-19 149.7 15.3 157 374-587 10-169 (176)
20 PHA02820 phospholipase-D-like 99.5 6.6E-14 1.4E-18 164.8 16.1 146 760-959 4-151 (424)
21 cd00138 PLDc Phospholipase D. 99.5 1.4E-13 3.1E-18 142.1 14.7 151 764-960 2-152 (176)
22 PRK13912 nuclease NucT; Provis 99.3 4.5E-11 9.7E-16 125.4 16.5 143 382-587 30-174 (177)
23 PHA03003 palmytilated EEV memb 99.3 2.1E-11 4.6E-16 141.7 14.5 142 387-587 218-363 (369)
24 PRK13912 nuclease NucT; Provis 99.3 1.7E-11 3.8E-16 128.5 12.3 129 782-962 32-160 (177)
25 KOG3603 Predicted phospholipas 99.3 2.9E-09 6.4E-14 121.7 28.8 115 385-508 72-190 (456)
26 PRK12452 cardiolipin synthetas 99.2 3.9E-11 8.4E-16 144.7 13.7 146 374-588 328-481 (509)
27 cd06875 PX_IRAS The phosphoino 99.2 4.6E-11 9.9E-16 117.2 10.7 104 57-218 5-110 (116)
28 PF13091 PLDc_2: PLD-like doma 99.2 1.2E-10 2.6E-15 113.7 9.8 114 789-962 2-115 (126)
29 KOG1259 Nischarin, modulator o 99.1 1.6E-10 3.5E-15 126.6 8.0 93 73-217 25-119 (490)
30 cd06878 PX_SNX25 The phosphoin 99.1 7.1E-10 1.5E-14 110.5 10.4 106 57-213 10-127 (127)
31 cd06872 PX_SNX19_like_plant Th 99.0 1.3E-09 2.9E-14 105.5 10.3 100 57-211 2-105 (107)
32 PF13091 PLDc_2: PLD-like doma 99.0 3.9E-09 8.4E-14 103.0 13.6 123 390-584 1-126 (126)
33 cd06871 PX_MONaKA The phosphoi 99.0 2.1E-09 4.5E-14 106.2 10.3 89 75-217 21-114 (120)
34 PF00787 PX: PX domain; Inter 99.0 1.2E-09 2.6E-14 104.3 8.1 104 57-213 5-113 (113)
35 cd06897 PX_SNARE The phosphoin 99.0 2.5E-09 5.4E-14 103.3 9.3 87 75-212 15-107 (108)
36 cd06882 PX_p40phox The phospho 98.9 5.2E-09 1.1E-13 103.8 11.5 116 55-216 2-121 (123)
37 cd06880 PX_SNX22 The phosphoin 98.9 5E-09 1.1E-13 102.0 10.3 101 58-216 3-105 (110)
38 cd06877 PX_SNX14 The phosphoin 98.9 4.9E-09 1.1E-13 103.4 10.4 106 56-212 3-118 (119)
39 PRK11263 cardiolipin synthase 98.9 7.2E-09 1.6E-13 122.1 13.3 135 782-960 17-154 (411)
40 cd07276 PX_SNX16 The phosphoin 98.9 6.7E-09 1.5E-13 100.9 10.3 102 57-213 5-110 (110)
41 PRK01642 cls cardiolipin synth 98.9 1.6E-08 3.5E-13 121.7 14.4 145 374-587 302-454 (483)
42 cd06870 PX_CISK The phosphoino 98.8 1.4E-08 3.1E-13 98.5 10.3 88 74-213 19-109 (109)
43 cd06883 PX_PI3K_C2 The phospho 98.8 2.3E-08 5E-13 97.2 10.2 100 58-212 2-108 (109)
44 PF00614 PLDc: Phospholipase D 98.8 1.5E-09 3.2E-14 80.0 0.6 27 485-511 2-28 (28)
45 cd06873 PX_SNX13 The phosphoin 98.8 3.6E-08 7.9E-13 97.4 9.8 103 57-212 6-119 (120)
46 PRK09428 pssA phosphatidylseri 98.7 5.9E-08 1.3E-12 115.5 13.2 139 783-962 35-180 (451)
47 cd06890 PX_Bem1p The phosphoin 98.7 6.2E-08 1.3E-12 94.6 10.8 106 57-212 2-111 (112)
48 cd07280 PX_YPT35 The phosphoin 98.7 4.4E-08 9.6E-13 96.7 9.6 106 58-211 5-119 (120)
49 smart00312 PX PhoX homologous 98.7 3.2E-08 7E-13 94.1 8.4 85 76-211 13-105 (105)
50 cd06876 PX_MDM1p The phosphoin 98.7 7.7E-08 1.7E-12 96.7 11.0 104 56-211 20-132 (133)
51 PRK05443 polyphosphate kinase; 98.7 3.7E-08 8E-13 122.1 10.5 118 786-962 351-481 (691)
52 cd01251 PH_centaurin_alpha Cen 98.7 2E-07 4.3E-12 89.7 11.5 100 226-348 1-100 (103)
53 cd06093 PX_domain The Phox Hom 98.6 1.6E-07 3.5E-12 88.6 10.0 87 74-211 16-105 (106)
54 cd06887 PX_p47phox The phospho 98.6 2.5E-07 5.5E-12 91.1 11.5 113 57-214 3-117 (118)
55 cd06884 PX_PI3K_C2_68D The pho 98.6 1.8E-07 3.8E-12 91.3 10.1 101 57-211 3-109 (111)
56 cd06879 PX_UP1_plant The phosp 98.6 9.8E-08 2.1E-12 95.8 8.5 88 74-212 43-137 (138)
57 cd06869 PX_UP2_fungi The phosp 98.6 2.1E-07 4.6E-12 91.9 10.3 82 75-211 33-117 (119)
58 cd06886 PX_SNX27 The phosphoin 98.6 1.5E-07 3.2E-12 91.1 8.9 84 74-211 20-104 (106)
59 cd06861 PX_Vps5p The phosphoin 98.6 2E-07 4.2E-12 91.1 9.7 89 73-212 16-111 (112)
60 cd07279 PX_SNX20_21_like The p 98.6 1.8E-07 3.9E-12 91.2 9.3 103 58-212 3-111 (112)
61 cd06888 PX_FISH The phosphoino 98.6 3.4E-07 7.4E-12 90.3 11.0 111 57-212 3-118 (119)
62 cd06862 PX_SNX9_18_like The ph 98.6 2.7E-07 5.8E-12 91.9 9.8 88 74-214 19-108 (125)
63 cd07277 PX_RUN The phosphoinos 98.6 3.1E-07 6.6E-12 90.6 10.0 48 58-107 3-50 (118)
64 cd07300 PX_SNX20 The phosphoin 98.6 2.7E-07 5.9E-12 90.5 9.5 89 75-213 18-112 (114)
65 cd06874 PX_KIF16B_SNX23 The ph 98.6 3.7E-07 8E-12 91.1 10.5 49 57-107 2-50 (127)
66 cd06867 PX_SNX41_42 The phosph 98.6 2.6E-07 5.7E-12 90.1 9.1 99 58-212 2-111 (112)
67 cd07289 PX_PI3K_C2_alpha The p 98.5 4.2E-07 9.1E-12 88.1 10.2 99 57-211 1-107 (109)
68 KOG3603 Predicted phospholipas 98.5 6.2E-07 1.4E-11 103.1 12.9 149 385-587 276-439 (456)
69 cd06865 PX_SNX_like The phosph 98.5 3.7E-07 8.1E-12 90.2 9.4 89 73-212 21-119 (120)
70 cd06881 PX_SNX15_like The phos 98.5 3.4E-07 7.3E-12 90.1 9.0 102 58-211 5-115 (117)
71 cd06859 PX_SNX1_2_like The pho 98.5 3.9E-07 8.5E-12 88.9 9.1 101 58-211 3-112 (114)
72 cd06864 PX_SNX4 The phosphoino 98.5 4.6E-07 9.9E-12 90.8 9.4 104 58-211 3-127 (129)
73 cd01233 Unc104 Unc-104 pleckst 98.5 1.3E-06 2.8E-11 83.5 11.4 96 225-348 3-98 (100)
74 cd06898 PX_SNX10 The phosphoin 98.5 6.3E-07 1.4E-11 87.8 9.2 88 74-212 17-112 (113)
75 cd06866 PX_SNX8_Mvp1p_like The 98.5 7E-07 1.5E-11 86.3 9.1 86 74-212 17-104 (105)
76 cd01238 PH_Tec Tec pleckstrin 98.5 1.2E-06 2.6E-11 84.7 10.7 99 226-346 2-105 (106)
77 cd06868 PX_HS1BP3 The phosphoi 98.4 7.2E-07 1.6E-11 88.3 9.1 88 74-212 19-119 (120)
78 cd06863 PX_Atg24p The phosphoi 98.4 1E-06 2.2E-11 86.8 10.1 90 74-213 18-118 (118)
79 cd07295 PX_Grd19 The phosphoin 98.4 7.6E-07 1.6E-11 87.6 9.1 89 74-213 18-114 (116)
80 cd06860 PX_SNX7_30_like The ph 98.4 1.1E-06 2.3E-11 86.5 9.7 89 73-211 16-114 (116)
81 cd07282 PX_SNX2 The phosphoino 98.4 9.3E-07 2E-11 88.0 9.3 95 74-213 17-124 (124)
82 cd07301 PX_SNX21 The phosphoin 98.4 1.2E-06 2.7E-11 85.6 9.1 89 74-212 17-111 (112)
83 cd06885 PX_SNX17_31 The phosph 98.4 1.1E-06 2.4E-11 84.9 8.5 85 74-212 17-102 (104)
84 cd01260 PH_CNK Connector enhan 98.4 3.5E-06 7.5E-11 79.5 11.2 93 226-346 2-95 (96)
85 cd07287 PX_RPK118_like The pho 98.3 2.2E-06 4.7E-11 84.6 9.5 91 75-211 17-116 (118)
86 cd07281 PX_SNX1 The phosphoino 98.3 2.1E-06 4.5E-11 85.4 9.3 111 58-212 3-123 (124)
87 cd07286 PX_SNX18 The phosphoin 98.3 1.8E-06 4E-11 86.0 8.8 88 74-214 19-108 (127)
88 cd06893 PX_SNX19 The phosphoin 98.3 2E-06 4.3E-11 86.5 8.7 35 178-212 97-131 (132)
89 smart00155 PLDc Phospholipase 98.3 5.3E-07 1.1E-11 66.6 3.3 25 919-943 4-28 (28)
90 cd06894 PX_SNX3_like The phosp 98.3 2.5E-06 5.5E-11 84.8 8.8 90 73-213 17-121 (123)
91 PF00169 PH: PH domain; Inter 98.2 1.4E-05 2.9E-10 74.0 12.2 94 226-347 3-102 (104)
92 COG1502 Cls Phosphatidylserine 98.2 7.8E-06 1.7E-10 96.8 13.1 144 377-588 253-410 (438)
93 cd07288 PX_SNX15 The phosphoin 98.2 6.1E-06 1.3E-10 81.5 9.7 91 75-211 17-116 (118)
94 cd06889 PX_NoxO1 The phosphoin 98.2 1E-05 2.2E-10 79.9 11.1 108 57-212 7-120 (121)
95 cd07283 PX_SNX30 The phosphoin 98.2 5.2E-06 1.1E-10 81.8 9.1 91 74-211 17-114 (116)
96 cd01265 PH_PARIS-1 PARIS-1 ple 98.2 1.2E-05 2.6E-10 76.3 10.1 77 257-347 15-93 (95)
97 cd07293 PX_SNX3 The phosphoino 98.2 7.6E-06 1.6E-10 81.4 9.1 91 74-212 18-120 (123)
98 cd07285 PX_SNX9 The phosphoino 98.1 8.1E-06 1.7E-10 81.3 8.8 91 74-216 19-111 (126)
99 cd01236 PH_outspread Outspread 98.1 1.6E-05 3.5E-10 76.8 10.3 79 257-346 22-102 (104)
100 cd07290 PX_PI3K_C2_beta The ph 98.1 1.2E-05 2.5E-10 78.3 8.8 86 75-211 16-107 (109)
101 cd07294 PX_SNX12 The phosphoin 98.1 1.4E-05 3.1E-10 80.4 9.6 92 74-216 20-126 (132)
102 cd01264 PH_melted Melted pleck 98.1 2.5E-05 5.3E-10 75.1 10.3 83 257-347 17-100 (101)
103 cd01257 PH_IRS Insulin recepto 98.1 2.7E-05 5.9E-10 74.9 10.3 77 258-346 13-100 (101)
104 cd01250 PH_centaurin Centaurin 98.1 3.1E-05 6.7E-10 71.8 10.5 91 226-346 1-93 (94)
105 cd01246 PH_oxysterol_bp Oxyste 98.1 3.6E-05 7.8E-10 70.9 10.8 75 257-346 13-90 (91)
106 cd01247 PH_GPBP Goodpasture an 98.0 5.3E-05 1.1E-09 71.5 11.1 75 257-346 13-90 (91)
107 cd01252 PH_cytohesin Cytohesin 98.0 7E-05 1.5E-09 74.4 11.6 91 226-348 2-113 (125)
108 cd01235 PH_SETbf Set binding f 97.9 8.2E-05 1.8E-09 70.5 11.1 83 257-347 13-100 (101)
109 cd01266 PH_Gab Gab (Grb2-assoc 97.9 6.3E-05 1.4E-09 72.9 10.4 83 257-346 17-106 (108)
110 PF00614 PLDc: Phospholipase D 97.9 3.8E-06 8.3E-11 62.2 1.4 25 919-943 4-28 (28)
111 cd07284 PX_SNX7 The phosphoino 97.9 4.1E-05 8.9E-10 75.5 8.8 92 73-211 16-114 (116)
112 cd01244 PH_RasGAP_CG9209 RAS_G 97.9 0.00012 2.5E-09 70.2 10.7 79 257-346 19-97 (98)
113 smart00233 PH Pleckstrin homol 97.6 0.00083 1.8E-08 60.8 11.9 96 225-348 2-101 (102)
114 PF15413 PH_11: Pleckstrin hom 97.6 0.00063 1.4E-08 66.6 11.2 103 226-347 1-112 (112)
115 TIGR03705 poly_P_kin polyphosp 97.4 0.001 2.2E-08 83.0 11.9 122 782-962 339-472 (672)
116 KOG3964 Phosphatidylglycerolph 97.3 0.035 7.6E-07 64.2 22.7 123 373-508 27-166 (469)
117 cd00821 PH Pleckstrin homology 97.3 0.0012 2.6E-08 59.2 9.0 78 257-346 14-95 (96)
118 cd01241 PH_Akt Akt pleckstrin 97.3 0.0017 3.8E-08 62.4 10.2 94 225-347 2-101 (102)
119 PF15409 PH_8: Pleckstrin homo 97.3 0.0017 3.7E-08 61.1 9.7 75 257-347 12-88 (89)
120 cd06896 PX_PI3K_C2_gamma The p 97.3 0.0013 2.8E-08 62.5 8.8 96 58-211 2-99 (101)
121 smart00155 PLDc Phospholipase 97.2 0.00027 5.8E-09 52.3 3.1 23 486-508 3-25 (28)
122 PF13918 PLDc_3: PLD-like doma 97.2 0.0013 2.8E-08 69.2 9.2 84 386-475 83-172 (177)
123 cd01237 Unc112 Unc-112 pleckst 96.9 0.0039 8.6E-08 60.4 8.6 82 257-348 18-103 (106)
124 cd01245 PH_RasGAP_CG5898 RAS G 96.9 0.0044 9.4E-08 59.5 8.9 78 257-346 14-97 (98)
125 PLN02866 phospholipase D 96.9 0.0059 1.3E-07 78.2 12.2 57 782-845 343-404 (1068)
126 cd00900 PH-like Pleckstrin hom 96.9 0.011 2.4E-07 53.3 10.9 78 257-346 17-98 (99)
127 cd01263 PH_anillin Anillin Ple 96.9 0.0066 1.4E-07 60.5 9.9 82 257-346 17-121 (122)
128 cd01253 PH_beta_spectrin Beta- 96.8 0.0098 2.1E-07 56.9 10.3 80 257-346 21-103 (104)
129 cd01219 PH_FGD FGD (faciogenit 96.8 0.018 3.9E-07 55.3 11.8 90 226-348 4-99 (101)
130 PF07894 DUF1669: Protein of u 96.6 0.011 2.4E-07 66.5 10.7 140 385-584 134-278 (284)
131 cd06891 PX_Vps17p The phosphoi 96.6 0.0076 1.7E-07 61.3 8.2 101 57-212 31-139 (140)
132 cd01230 PH_EFA6 EFA6 Pleckstri 96.4 0.038 8.2E-07 54.8 11.4 103 225-348 1-111 (117)
133 PF14593 PH_3: PH domain; PDB: 96.3 0.053 1.1E-06 52.7 11.6 86 224-348 13-99 (104)
134 PF11495 Regulator_TrmB: Archa 96.2 0.034 7.3E-07 61.2 11.4 95 382-508 7-101 (233)
135 KOG0930 Guanine nucleotide exc 96.2 0.02 4.3E-07 63.3 9.3 106 225-348 261-375 (395)
136 KOG2527 Sorting nexin SNX11 [I 95.5 0.0094 2E-07 59.4 2.9 91 73-215 33-132 (144)
137 cd01220 PH_CDEP Chondrocyte-de 94.9 0.39 8.5E-06 46.3 11.8 35 314-348 63-97 (99)
138 cd01256 PH_dynamin Dynamin ple 94.7 0.14 2.9E-06 49.1 7.8 79 259-348 19-105 (110)
139 cd01242 PH_ROK Rok (Rho- assoc 94.2 0.51 1.1E-05 46.3 10.8 88 257-348 18-110 (112)
140 cd07291 PX_SNX5 The phosphoino 93.9 0.13 2.8E-06 52.2 6.3 28 185-212 113-140 (141)
141 PF15410 PH_9: Pleckstrin homo 93.7 0.56 1.2E-05 46.5 10.4 103 225-348 1-118 (119)
142 PF13918 PLDc_3: PLD-like doma 93.3 0.15 3.2E-06 54.1 5.8 61 783-848 82-144 (177)
143 KOG2273 Membrane coat complex 92.9 0.28 6.1E-06 60.0 8.5 91 75-215 128-229 (503)
144 PLN03008 Phospholipase D delta 92.7 0.49 1.1E-05 60.3 10.2 57 385-446 567-635 (868)
145 cd01218 PH_phafin2 Phafin2 Pl 92.6 1.7 3.7E-05 42.4 11.6 84 255-348 14-98 (104)
146 KOG1329 Phospholipase D1 [Lipi 92.4 0.46 1E-05 60.4 9.4 56 384-444 565-627 (887)
147 PF07894 DUF1669: Protein of u 92.3 1.4 3.1E-05 50.0 12.2 161 760-986 117-279 (284)
148 cd07292 PX_SNX6 The phosphoino 92.0 0.28 6.2E-06 49.8 5.6 31 182-212 110-140 (141)
149 PLN02352 phospholipase D epsil 91.4 1.3 2.9E-05 56.2 11.7 57 782-844 186-250 (758)
150 PLN02270 phospholipase D alpha 91.4 0.32 7E-06 61.7 6.4 24 486-509 656-679 (808)
151 cd01243 PH_MRCK MRCK (myotonic 91.3 1.4 3.1E-05 43.9 9.5 87 257-347 18-118 (122)
152 cd06892 PX_SNX5_like The phosp 90.2 0.5 1.1E-05 48.4 5.5 25 188-212 116-140 (141)
153 cd01259 PH_Apbb1ip Apbb1ip (Am 89.4 0.61 1.3E-05 45.9 5.1 95 226-348 2-108 (114)
154 KOG2059 Ras GTPase-activating 89.3 0.88 1.9E-05 56.4 7.5 151 184-366 519-676 (800)
155 cd01234 PH_CADPS CADPS (Ca2+-d 89.2 0.5 1.1E-05 45.8 4.3 84 257-348 17-110 (117)
156 cd07299 PX_TCGAP The phosphoin 88.2 2.3 5E-05 41.4 7.9 32 75-107 25-57 (113)
157 KOG0905 Phosphoinositide 3-kin 88.0 1.1 2.3E-05 58.3 7.1 86 75-211 1392-1483(1639)
158 COG3886 Predicted HKD family n 82.7 13 0.00027 40.1 11.0 110 377-508 29-143 (198)
159 PF11495 Regulator_TrmB: Archa 81.5 6 0.00013 43.7 8.7 51 781-846 8-58 (233)
160 cd01261 PH_SOS Son of Sevenles 81.2 21 0.00046 35.4 11.4 78 258-348 19-109 (112)
161 KOG1117 Rho- and Arf-GTPase ac 80.3 18 0.0004 46.3 12.8 138 188-348 992-1131(1186)
162 PF13090 PP_kinase_C: Polyphos 80.1 7.1 0.00015 45.6 8.8 94 819-962 51-151 (352)
163 cd07278 PX_RICS_like The phosp 79.7 7.8 0.00017 38.0 7.5 33 75-107 26-58 (114)
164 COG0855 Ppk Polyphosphate kina 79.2 9.3 0.0002 47.7 9.8 88 383-495 350-445 (696)
165 cd07298 PX_RICS The phosphoino 76.8 11 0.00023 37.3 7.5 33 75-107 27-59 (115)
166 KOG3723 PH domain protein Melt 76.6 1.4 2.9E-05 53.5 1.8 108 217-348 728-836 (851)
167 PF13090 PP_kinase_C: Polyphos 73.5 9.5 0.00021 44.6 7.5 120 390-582 23-160 (352)
168 KOG0690 Serine/threonine prote 71.5 5.5 0.00012 46.0 4.9 96 225-349 16-117 (516)
169 COG0855 Ppk Polyphosphate kina 71.4 17 0.00036 45.6 9.2 109 819-993 385-500 (696)
170 PLN00188 enhanced disease resi 69.2 16 0.00035 46.4 8.6 83 260-350 24-111 (719)
171 COG3886 Predicted HKD family n 67.2 46 0.001 36.0 10.3 55 782-849 38-92 (198)
172 KOG3751 Growth factor receptor 67.0 9.9 0.00022 46.2 5.9 86 257-348 331-424 (622)
173 PF12814 Mcp5_PH: Meiotic cell 66.2 42 0.00091 33.5 9.5 35 314-348 87-121 (123)
174 KOG2528 Sorting nexin SNX9/SH3 65.8 8.8 0.00019 45.8 5.1 85 76-213 206-292 (490)
175 PF06087 Tyr-DNA_phospho: Tyro 65.1 3.9 8.5E-05 49.5 2.3 40 917-957 346-402 (443)
176 PF09565 RE_NgoFVII: NgoFVII r 63.4 6.7 0.00015 45.1 3.6 41 918-960 79-124 (296)
177 cd01249 PH_oligophrenin Oligop 59.6 87 0.0019 30.8 9.9 35 311-345 66-102 (104)
178 COG5391 Phox homology (PX) dom 56.4 16 0.00035 45.2 5.5 27 178-204 218-244 (524)
179 KOG3784 Sorting nexin protein 53.1 31 0.00066 41.0 6.6 32 178-210 68-99 (407)
180 cd01222 PH_clg Clg (common-sit 52.3 69 0.0015 31.0 7.9 34 315-348 59-95 (97)
181 cd01232 PH_TRIO Trio pleckstri 48.4 1.1E+02 0.0024 30.4 8.9 36 313-348 74-112 (114)
182 KOG4424 Predicted Rho/Rac guan 48.2 43 0.00093 41.5 7.0 35 314-348 335-369 (623)
183 KOG2101 Intermediate filament- 44.7 27 0.00058 41.1 4.7 35 73-107 133-172 (362)
184 cd01224 PH_Collybistin Collybi 36.1 2.5E+02 0.0055 27.9 9.0 81 260-347 19-106 (109)
185 cd01227 PH_Dbs Dbs (DBL's big 35.8 2.1E+02 0.0045 29.5 8.7 34 315-348 82-115 (133)
186 PF06087 Tyr-DNA_phospho: Tyro 35.3 41 0.00088 40.9 4.3 64 919-985 101-169 (443)
187 cd05394 RasGAP_RASA2 RASA2 (or 34.9 11 0.00023 43.8 -0.7 49 205-267 259-312 (313)
188 KOG0521 Putative GTPase activa 32.4 38 0.00083 44.1 3.6 80 257-348 289-368 (785)
189 PF08458 PH_2: Plant pleckstri 31.5 98 0.0021 30.8 5.4 35 314-348 69-103 (110)
190 cd01262 PH_PDK1 3-Phosphoinosi 28.3 3E+02 0.0066 26.5 7.9 72 259-347 15-87 (89)
191 cd01240 PH_beta-ARK Beta adren 27.7 60 0.0013 32.2 3.2 79 257-347 18-97 (116)
192 PF12357 PLD_C: Phospholipase 27.5 59 0.0013 30.1 2.9 24 999-1023 5-28 (74)
193 KOG3640 Actin binding protein 24.3 69 0.0015 41.9 3.7 85 257-348 1006-1106(1116)
194 cd01228 PH_BCR-related BCR (br 22.3 2.7E+02 0.0058 27.2 6.3 79 265-348 3-94 (96)
195 PF10015 DUF2258: Uncharacteri 21.2 1.6E+02 0.0035 27.4 4.4 43 971-1027 7-49 (75)
196 PTZ00267 NIMA-related protein 20.0 2E+02 0.0043 35.0 6.5 33 315-347 442-475 (478)
No 1
>PLN02866 phospholipase D
Probab=100.00 E-value=3.2e-259 Score=2314.81 Aligned_cols=1063 Identities=74% Similarity=1.252 Sum_probs=991.2
Q ss_pred cccccccCCCCceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 001225 46 AEHEQVFDELPKATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWL 125 (1120)
Q Consensus 46 ~~~~~vf~~~p~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~ 125 (1120)
+|+++||+|||+|+||+|+|+++++++|+.+.|||||+|++|||++.||++|++||||+||+|++++||||||||+|+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1068)
T PLN02866 3 PESCRIFDELPKATIVSVSRPDAGDISPVLLSYTIELQYKQFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWL 82 (1068)
T ss_pred CcccchhhhCCcceEEEEecCCCCCCCceEEEEEEEEEEeeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc-cHHHHHHHHHHHHHHHHHhhcccccch
Q 001225 126 QSIGIVDQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ-TVAERAKVAMQGYLNHFMGNIDIVNSR 204 (1120)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~-~~~~rrr~~LE~YL~~LL~~~~~~~~~ 204 (1120)
|+|||++|++++|+++|+||+++|+|+++++++|++||+++||.+||+||++ ++++|++.+||+|||+||+++.++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~yL~~~l~~~~~~n~~ 162 (1068)
T PLN02866 83 QNLGIGDHPAVVQDDDEPDDGTVPLHHDESAKNRDVPSSAALPVIRPALGRQQSISDRAKVAMQEYLNHFLGNLDIVNSR 162 (1068)
T ss_pred HhcCcccCccccccccccccccccccchhhcccCCCcchhhcceeccccCCCccccHHHHHHHHHHHHHHhccchhcCCH
Confidence 9999999999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred hccccceecccccccccCCcceeeEEEEEeccCCCCCCCCCccc-ccccccccCCcceEEEEEecCeEEEEeCCCCCcee
Q 001225 205 EVCKFLEVSRLSFSEEYGPKLKEGYVMVKHLSNISKTDDAIHCT-GCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVL 283 (1120)
Q Consensus 205 ~l~~FLEvS~lsf~~~~G~KgkEG~l~kr~~~~~~~~~~~~~~~-~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~ 283 (1120)
++|+|||||.+||+++||+|||||||+|||+++++|+++..+|| |+||+||..+|+|||||||+|||+||++|++++|+
T Consensus 163 ~~~~FlevS~lsf~~~~g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~ 242 (1068)
T PLN02866 163 EVCKFLEVSKLSFSPEYGPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKPL 242 (1068)
T ss_pred hhhhheeeceeeehhhcCCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCcee
Confidence 99999999999999999999999999999999998877777776 77899999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q 001225 284 DIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAGLRPLEGWCHPHRFGS 363 (1120)
Q Consensus 284 ~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~~~~~~~~~~~~rf~s 363 (1120)
||||||.+|.+.+++++++.+++.+|++|+++|||+|.|++|+|+|+|+|++++++|+.+|+.++.+++++|+.+|||+|
T Consensus 243 ~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~~~~~~~~~~hRF~S 322 (1068)
T PLN02866 243 DIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGLRPPEGWCHPHRFGS 322 (1068)
T ss_pred EEEEEecccccccCCCcceeecccccccCCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHhccCccccccCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCCCccCCCCceEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEE
Q 001225 364 YAPPRGLTEDGSQAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYIL 443 (1120)
Q Consensus 364 fap~r~~~~~gn~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrIL 443 (1120)
|||+|.++..||.++||+||++||++|++||++||++|+|+||||+||+||+||..+..+++|+++|++||++||+||||
T Consensus 323 FAP~r~~~~~gN~vk~LvDG~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~~g~RL~~lL~rKAkrGVkVrVL 402 (1068)
T PLN02866 323 FAPPRGLTEDGSQAQWFIDGHAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDHESSRLDSLLEAKAKQGVQIYIL 402 (1068)
T ss_pred cCCCccccCCCCEEEEEeCHHHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCchHHHHHHHHHHHHHCCCEEEEE
Confidence 99999766679999999999999999999999999999999999999999999766789999999999999999999999
Q ss_pred EcccchhhhhhcchhhHHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCC
Q 001225 444 LYKEVSIALKINSMYSKKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCP 523 (1120)
Q Consensus 444 vyd~~~~al~~~s~~~k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~ 523 (1120)
+||+++.++.+++.++++.|..+|+||+|+++|.+++.+.++|||||||||||+++||+||+|||+|||||++|++.|++
T Consensus 403 LyD~vg~al~~~S~~~k~~L~~lh~gI~V~r~P~~~~~~~ln~RhHRKIVVIDg~IAFvGGiNLc~GRWDT~~H~l~D~~ 482 (1068)
T PLN02866 403 LYKEVALALKINSVYSKRRLLGIHENVKVLRYPDHFSSGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTPEHRVGDCP 482 (1068)
T ss_pred EECccccccccCchhhHHHHHHhCCCeEEEecCcccccCcccccCCCCeEEECCCEEEecCcccCCCccCCccccccccc
Confidence 99999888888898887888888999999999988776778999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccC
Q 001225 524 PSLWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIP 603 (1120)
Q Consensus 524 ~~~~pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p 603 (1120)
+.+|||+||+|+++.||.+|+++++|++||..+||||||||||+|+||+|+||++||++|||++++.|++++..+|+++|
T Consensus 483 ~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p 562 (1068)
T PLN02866 483 PVIWPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMP 562 (1068)
T ss_pred ccccCcccccccccccccccccccccccccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred CccccccccccccccccccCcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccccccccc
Q 001225 604 HHHMVLPHYMGRSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDDKSNGLNTNHNILDRTSG 683 (1120)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1120)
+++|++|+|.+..++.+.+.++..++...+.|+++|++.++++++|+++|++.++...+++..+.++.+..+..
T Consensus 563 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~------ 636 (1068)
T PLN02866 563 HHHMVIPHYLGGSEEEEIESKNQEDNQKGIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGS------ 636 (1068)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCCCCcccccccccccccccccccccc------
Confidence 99999999999988888777777777788889999988888999999999987665555554444333221111
Q ss_pred CCCcccCCCCcccccccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhcccccccccc-ccCCCCCCCcc
Q 001225 684 FYGSCTIPSNEYKTEALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSS-KCGQVGPRLAC 762 (1120)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 762 (1120)
.| .++++.+.+...++.|++|+.|+.+.++++...+... +... ....+||+++...++..+. +.++++++++|
T Consensus 637 --~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 710 (1068)
T PLN02866 637 --LS--FSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKMSSAE-RGSK-ESDSEWWETQERGDQVGSADEVGQVGPRVSC 710 (1068)
T ss_pred --cc--ccccccccccccccccccccccccccccccccccccc-cccc-cccccccccccccccccccccccccCCCCeE
Confidence 11 3455666677788899999888766544331110000 0011 1145688888777766543 67778899999
Q ss_pred eEEEeecCcccCCCCCCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 001225 763 RCQIIRSVSQWSAGTSQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIV 842 (1120)
Q Consensus 763 ~vQilRS~~~WS~G~~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~I 842 (1120)
.|||+||+++||+|++++|+||++||+++|++|+|||||||||||+++++++.|+|.|++||++||++|+++++.|+|||
T Consensus 711 ~~QivRS~~~WS~G~~~~E~SI~~AYi~~I~~A~hfIYIENQFFis~~~~~~~i~N~I~~AL~~RI~rA~~~~~~frviI 790 (1068)
T PLN02866 711 RCQVIRSVSQWSAGTSQVEESIHAAYCSLIEKAEHFIYIENQFFISGLSGDDTIQNRVLEALYRRILRAHKEKKCFRVII 790 (1068)
T ss_pred EEEEEeecccccCCCCchHHHHHHHHHHHHHhcccEEEEecccccccccccccccchHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99999999999999988999999999999999999999999999999878889999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeee
Q 001225 843 VLPLIPGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHS 922 (1120)
Q Consensus 843 VlP~~P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHS 922 (1120)
|||++|+|+|++.+++++++|+||+|||+|||||++||+++|+++.|.++.+||+||+||+|+++..+++++||+|||||
T Consensus 791 ViP~~P~F~G~v~~~~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g~~p~dYisf~~LRn~~~l~~~~~~vteqIYVHs 870 (1068)
T PLN02866 791 VIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGKNSILHNLYDLLGPKTHDYISFYGLRAYGRLFEGGPLATSQIYVHS 870 (1068)
T ss_pred EecCCCCcCCCCCCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHeEeeecccccccccCCCcccceeeEEEe
Confidence 99999999999998888999999999999999999999999999789999999999999999999889999999999999
Q ss_pred eEEEEeccEEEEcccccccCCCCCCCCceeeEEEEccchhhcccCCCCcchhhhHHHHHHHHHHhhcCCCcCcccccCCC
Q 001225 923 KVMIIDDRAALIGSSNINDRSLLGSRDSEIDVVIEDKEFLESSMNGEPWKAGKFSHSLRCFLWAEHLGLHAGEISRISDP 1002 (1120)
Q Consensus 923 KlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~~v~s~M~G~~~~agkfa~~LR~~L~~eHlG~~~~~~~~~~dp 1002 (1120)
|+|||||++++|||||||+|||+|++||||+++++|++.+++.|||++|.||+||++||++||+||||+.+++++.+.||
T Consensus 871 K~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~~DP 950 (1068)
T PLN02866 871 KIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKIIDP 950 (1068)
T ss_pred eEEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHhHHHhhhhhccCCccccCCCCccccccccCCccccCCHHhh
Q 001225 1003 LADTTYRDLWQATAEENTLIYEDVFDCMPNEVIHSRSALRHSMNQRKEKLGHTTIDFGIAPEKLETNENGEIIATDPMER 1082 (1120)
Q Consensus 1003 ~~~~~~~~~W~~~a~~Nt~iy~~vF~~~P~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 1082 (1120)
++|+||+++|+.+|++||+||++||+|+|+|.|+||.+|++|++.||+++||+++++|+++++++.+++|+++..++.++
T Consensus 951 ~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~~~~ 1030 (1068)
T PLN02866 951 VCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDPMER 1030 (1068)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceeEEeecccchhhhcCCCCCCcccccccCCCCCC
Q 001225 1083 LKSVKGHLVAFPLQFMCQEDLRPVLIESEFYASPQVFH 1120 (1120)
Q Consensus 1083 L~~i~G~lV~~Pl~Fl~~e~l~p~~~~~e~~~~~~~f~ 1120 (1120)
|++||||||+|||+|||+|||+|++++||||+||||||
T Consensus 1031 l~~I~G~lV~fPL~Fl~~E~L~p~~~~~e~~~~~~~~~ 1068 (1068)
T PLN02866 1031 LKSVRGHLVSFPLDFMCQEDLRPVFNESEYYASPQVFH 1068 (1068)
T ss_pred HhhceEEEEechhhhhhhccCCCCcCccceecCccccC
Confidence 99999999999999999999999999999999999999
No 2
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-174 Score=1542.87 Aligned_cols=831 Identities=39% Similarity=0.652 Sum_probs=717.2
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAV 136 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 136 (1120)
.+.|++++|+++...+++.++|+++|.||+|+|+|++.+++++.||+.|+++..+..+.- +..+++.++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~--- 116 (887)
T KOG1329|consen 48 FAAVVGVERPTSHPFVPSSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPD--------LGRLNINDN--- 116 (887)
T ss_pred cccccceecccccccccCCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccc--------ccccccccc---
Confidence 789999999999989999999999999999999999999999999999987555444211 111111111
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccccHHHHHHHHHHHHHHHHHhhcccccchhccccceecccc
Q 001225 137 VQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSRLS 216 (1120)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~ls 216 (1120)
.+..|+ .|+..+ ..+-++++++|+||+.+|.+..+++++.+++|||+|.++
T Consensus 117 ---------------------~~~~p~---~~~~~~-----~~~~~~~~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~ 167 (887)
T KOG1329|consen 117 ---------------------HDEKPS---GPRSSL-----NSSMEKRKTLENYLTVVLHKARYRRTHVIYEFLENSRWS 167 (887)
T ss_pred ---------------------ccccCC---CccCCc-----ccchhhhhhccchheeeechhhhhchhhhhcccccchhh
Confidence 122344 221111 111233468999999999999999999999999999999
Q ss_pred cccccCCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCC
Q 001225 217 FSEEYGPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNG 296 (1120)
Q Consensus 217 f~~~~G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~ 296 (1120)
|+.++|.++++||++++.+ + .+ | ..|+++|.+||+||+.||+++..+.+.+|+.+|..+.
T Consensus 168 f~~~~~~~h~~g~v~~~~~----~----~~--------~-~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~~--- 227 (887)
T KOG1329|consen 168 FSFDIGFAHKAGYVIFRVK----G----AR--------V-PGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGKPH--- 227 (887)
T ss_pred hhccccccccccEEEEeec----C----Cc--------c-ccceeEEEEeccchhhhhccccccceeeeeccCCccc---
Confidence 9999999999999998842 1 11 1 2399999999999999999999999999999996321
Q ss_pred CCCCCeeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhcCCCCCCCCC-CCCCCCCCCCCccCCCCc
Q 001225 297 KEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAGLRPLEGWCH-PHRFGSYAPPRGLTEDGS 375 (1120)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~~~~~~~~~~-~~rf~sfap~r~~~~~gn 375 (1120)
+.++.+..+.++.+.+..|.+.++|.+.+.+++|..++..+....+..+.+ .|||+||+|+| .++
T Consensus 228 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r----~~~ 293 (887)
T KOG1329|consen 228 ----------QKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVR----TLD 293 (887)
T ss_pred ----------cCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcc----cCC
Confidence 112334567999999999999999999999999999999887665555544 99999999999 578
Q ss_pred eEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhc
Q 001225 376 QAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKIN 455 (1120)
Q Consensus 376 ~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~ 455 (1120)
.++|++||..||++|++||++||+.|||+||||+||+||+||..+...+||+++|++||++||+|+|||||++.+++.++
T Consensus 294 ~~kw~vd~~~~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~i~ 373 (887)
T KOG1329|consen 294 GGKWFVDGKKYWEDVADAIENARREIYITGWWLSPELYLVRPPKGPNDWRLDELLKRKAEEGVRVLILVWKDVTSALGIN 373 (887)
T ss_pred CceEEEchhhHHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCCCceEHHHHHHHHHhCCcEEEEEEeccchhccccC
Confidence 99999999999999999999999999999999999999999988878999999999999999999999999999999999
Q ss_pred chhhHHHHHcccCCeEEEEcCCCCCcc-cccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCCCC
Q 001225 456 SMYSKKRLLKIHENVKVLRHPDHVSTG-VYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDYYN 534 (1120)
Q Consensus 456 s~~~k~~L~~~~~nI~V~r~P~~~~~~-~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY~n 534 (1120)
|.|++..+..+|+||+|+++|++...+ .++|+||||+||||+.+|||||+|||+|||||++|+|+|. -.+|+|+||+|
T Consensus 374 S~~~k~~l~~lH~nV~vlr~P~~~~~~~~~~wtHHeK~VVVD~~v~fvGGlDLC~GRYDT~eH~L~d~-~~~~~gkDy~n 452 (887)
T KOG1329|consen 374 SHYEKTRLFFLHPNVKVLRCPRHPGSGPTTLWTHHEKLVVVDQEVAFVGGLDLCDGRYDTPEHPLFDT-LQTWHGKDYHN 452 (887)
T ss_pred chhHHHHHhhcCCCeEEEECCCCcCCCCceEEecceEEEEEcceeccccceeccccccCCcccccccc-ccccccccccC
Confidence 999999999999999999999998777 5899999999999999999999999999999999999997 57899999999
Q ss_pred CCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccCCcccccccccc
Q 001225 535 PRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPHHHMVLPHYMG 614 (1120)
Q Consensus 535 ~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~~~~~~~~ 614 (1120)
++++|+.+ +|+.+.||||||||||+|.||+|+||++||+||||++++.|.++...+|+|+|.+++..|++.
T Consensus 453 ~~~~~~~~--------~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~~~~~~~p~L~p~~~~~~~~~~- 523 (887)
T KOG1329|consen 453 PNFKDFVD--------IDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKKPYDDSLPLLLPISDITGPSEP- 523 (887)
T ss_pred cccccchh--------cccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccCCCCccceeecChhhhcCCCCc-
Confidence 99888753 789999999999999999999999999999999999999998887888999987764433221
Q ss_pred ccccccccCcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCcccccccccCCCcccCCCCc
Q 001225 615 RSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDDKSNGLNTNHNILDRTSGFYGSCTIPSNE 694 (1120)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1120)
.+++ +..+ ..+
T Consensus 524 ---------------------------------------~~~~--------------------~e~~---~~q------- 534 (887)
T KOG1329|consen 524 ---------------------------------------NEED--------------------PESW---HVQ------- 534 (887)
T ss_pred ---------------------------------------cccc--------------------cccc---ccc-------
Confidence 1110 0000 000
Q ss_pred ccccccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhccccccccccccCCCCCCCcceEEEeecCcccC
Q 001225 695 YKTEALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSSKCGQVGPRLACRCQIIRSVSQWS 774 (1120)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~WS 774 (1120)
+ + .+ +...+.+.+|++||++.||
T Consensus 535 --------------------------------~-----------f---------~s-----i~~gs~~~~qvlrs~g~wS 557 (887)
T KOG1329|consen 535 --------------------------------V-----------F---------RS-----IDGGSVAGPQVLRSAGLWS 557 (887)
T ss_pred --------------------------------c-----------e---------ee-----ccCCcccchHHhhhhcccc
Confidence 0 0 00 0011234689999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCC
Q 001225 775 AGTSQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGI 854 (1120)
Q Consensus 775 ~G~~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~ 854 (1120)
+|..++|.||++||+++|++|||||||||||||+++..+..+.|++++||+.||++|+++++.|+||||||++|||+|+
T Consensus 558 ~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~- 636 (887)
T KOG1329|consen 558 GGINEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGD- 636 (887)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCC-
Confidence 9999999999999999999999999999999999987677899999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCC-CCCccccceeeeeeEEEEeccEEE
Q 001225 855 DDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCD-GGPVATSQVYVHSKVMIIDDRAAL 933 (1120)
Q Consensus 855 ~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~-~g~~vte~iyvHSKlmIVDD~~~i 933 (1120)
++++++++|+||||||+|||||++||+++|++ .|.++.+|+.||+||.++.+.. ++++++|+||||||+|||||+++|
T Consensus 637 ~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka-~g~d~~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD~~vI 715 (887)
T KOG1329|consen 637 DTPGSGSVQAILHWQYRTMSMGYKSIYKALKA-VGLDPADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDDEYVI 715 (887)
T ss_pred CCCCcchHHHHHHHHHHHHhhhHHHHHHHHHH-hcCCccccceeeeeeeeeccccccccceEEEEEEeeeeEEecCCEEE
Confidence 88899999999999999999999999999999 7888889999999999998754 778999999999999999999999
Q ss_pred EcccccccCCCCCCCCceeeEEEEccchhhcccCCCCcchhhhHHHHHHHHHHhhcCCCcC-----cccccCCCCchhHH
Q 001225 934 IGSSNINDRSLLGSRDSEIDVVIEDKEFLESSMNGEPWKAGKFSHSLRCFLWAEHLGLHAG-----EISRISDPLADTTY 1008 (1120)
Q Consensus 934 IGSANiN~RSm~G~~DsEi~v~i~D~~~v~s~M~G~~~~agkfa~~LR~~L~~eHlG~~~~-----~~~~~~dp~~~~~~ 1008 (1120)
|||||||+|||+|+||||||++++|++.+.|+|||+|| +||++||++||+||||+..+ +.....|||++.+|
T Consensus 716 IGSANINqRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~---~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~ 792 (887)
T KOG1329|consen 716 IGSANINQRSMLGNRDSEIAMGIYDTNHVWSKMNGRPY---GFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFE 792 (887)
T ss_pred EeecccchhhccCCccceeEEEEecccchhhccCCcch---hHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999 89999999999999999887 34567899999998
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCccccH-HHHhHHHhhhhhccCCccccCCCCccccccccCCccccCCHHhhhccce
Q 001225 1009 RDLWQATAEENTLIYEDVFDCMPNEVIHSR-SALRHSMNQRKEKLGHTTIDFGIAPEKLETNENGEIIATDPMERLKSVK 1087 (1120)
Q Consensus 1009 ~~~W~~~a~~Nt~iy~~vF~~~P~~~~~~~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~~i~ 1087 (1120)
++|+.+|..|+.+|+.+|+|+|.|.++++ ......++...+..+|.+.... ++.+++..++
T Consensus 793 -~~W~~~a~~n~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~-----------------~~~~~~lt~~ 854 (887)
T KOG1329|consen 793 -DLWQRYAARNTTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKS-----------------DALPENLTTR 854 (887)
T ss_pred -HHHHHHHhhhhhhhhceEEEcccccccCcceeecCCcccccccccccccccc-----------------ccCCcccccc
Confidence 99999999999999999999999999999 4454444443334444432221 2334566779
Q ss_pred eEEeecccchhhhcCCCCCCcccccccCCCCCC
Q 001225 1088 GHLVAFPLQFMCQEDLRPVLIESEFYASPQVFH 1120 (1120)
Q Consensus 1088 G~lV~~Pl~Fl~~e~l~p~~~~~e~~~~~~~f~ 1120 (1120)
|+||.|||.|||+|+|+|.+++||.++|.+||+
T Consensus 855 g~l~~fp~~~~~~~~~rp~~~s~e~~~p~~v~~ 887 (887)
T KOG1329|consen 855 GFLVSFPLYFLCKESLRPWLGSKERLVPLEVYT 887 (887)
T ss_pred ceeeeeeeEEeehhhcCCCcCccccCCCccCCC
Confidence 999999999999999999999999999999996
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1.2e-100 Score=917.96 Aligned_cols=513 Identities=30% Similarity=0.464 Sum_probs=404.8
Q ss_pred EEEEecChhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEecH----------------HHHHHHH
Q 001225 327 IKLRTTNSGKVKEWVAAINDAGLRPLEGWCHPHRFGSYAPPRGLTEDGSQAQWFIDG----------------QAAFEAI 390 (1120)
Q Consensus 327 l~l~~~s~~~~~~w~~~i~~~~~~~~~~~~~~~rf~sfap~r~~~~~gn~v~~lvDG----------------~~yf~al 390 (1120)
+.++...-.+..-|...+.... ..+ -+ ..|+|.| .|+.|+||.|+ .+||++|
T Consensus 125 ~~~~~~~~~~~~~~~~g~~~~~-~~g------vp-~~~f~~r----~g~~v~lyqdah~~~~~~p~i~l~~~~~~~f~al 192 (758)
T PLN02352 125 FMLWFRPAELEPTWCKILENGS-FQG------LR-NATFPQR----SNCHVILYQDAHHCSTFQPPVDLCGSPRKLWEDV 192 (758)
T ss_pred EEEEEEEhhhCcchhhcccCCC-cCC------cC-CcccccC----CCCEEEEEecCCCccccCCcceeecCHHHHHHHH
Confidence 5566666666667877774321 111 12 3677888 78999999886 5689999
Q ss_pred HHHHHhhceEEEEeeecCCceEEEEcCCC----CCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhc-----chhhHH
Q 001225 391 ASAIKNAKSQILITGWWLCPELYLIRPFE----NHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKIN-----SMYSKK 461 (1120)
Q Consensus 391 ~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~----~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~-----s~~~k~ 461 (1120)
++||++||++|+|++||++|+++|+|++. ++.+.+|+++|++||++||+|+||+||+.++...+. +.+...
T Consensus 193 ~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~~~~~g~m~th~~~ 272 (758)
T PLN02352 193 YKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPIIKNKGVMGTHDED 272 (758)
T ss_pred HHHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccccccccccccchHH
Confidence 99999999999999999999999999742 246789999999999999999999999865421111 111111
Q ss_pred HHH-cccCCeEEEEcCCCCCcccccccCcceEEEEeCC----------eEEEccccCCCCCcCCCCCcCCCCCCCCCCCC
Q 001225 462 RLL-KIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYR----------ISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGK 530 (1120)
Q Consensus 462 ~L~-~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~----------vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~ 530 (1120)
.+. ..|.+|.+...|......+..|+||||+||||+. +|||||||||+|||||++|+++|...+.++++
T Consensus 273 ~~~~f~h~~V~~~l~pr~~~~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~ 352 (758)
T PLN02352 273 AFAYFKHTKVVCKLCPRLHKKFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQ 352 (758)
T ss_pred HHhhccCCceEEeeccccccccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccc
Confidence 221 2478888776653222335679999999999986 99999999999999999999999988888888
Q ss_pred CCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccCCcccccc
Q 001225 531 DYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPHHHMVLP 610 (1120)
Q Consensus 531 dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~~~~ 610 (1120)
||+|+.+.. ..++.+.||||||||||+|+||||+||..+|+||||.+++.. +++|...
T Consensus 353 Df~~~~~~g----------~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~--------~l~p~~~---- 410 (758)
T PLN02352 353 DFYQTSIAG----------AKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS--------VLVPTSS---- 410 (758)
T ss_pred ccccccccc----------ccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc--------ccCCccc----
Confidence 998864321 112346799999999999999999999999999999876432 1222110
Q ss_pred ccccccccccccCcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCcccccccccCCCcccC
Q 001225 611 HYMGRSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDDKSNGLNTNHNILDRTSGFYGSCTI 690 (1120)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1120)
++.+.+...
T Consensus 411 -------------------------------------~~~~~~~p~---------------------------------- 419 (758)
T PLN02352 411 -------------------------------------IRNLVHQPG---------------------------------- 419 (758)
T ss_pred -------------------------------------ccccccCCC----------------------------------
Confidence 000000000
Q ss_pred CCCcccccccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhccccccccccccCCCCCCCcceEEEeecC
Q 001225 691 PSNEYKTEALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSSKCGQVGPRLACRCQIIRSV 770 (1120)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~ 770 (1120)
......+++.|||+||+
T Consensus 420 ---------------------------------------------------------------~~~~~~~~w~VQv~RSi 436 (758)
T PLN02352 420 ---------------------------------------------------------------SSESNNRNWKVQVYRSI 436 (758)
T ss_pred ---------------------------------------------------------------CCcccCCcccceEEEec
Confidence 00012357899999999
Q ss_pred cccCCCC----CCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCC-----ChhHHHHHHHHHHHHHHHHHHhCCCeEEE
Q 001225 771 SQWSAGT----SQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSG-----DETIQNRILEALYRRIMRAYKEQKYFRVI 841 (1120)
Q Consensus 771 ~~WS~G~----~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~-----~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~ 841 (1120)
+.||++. ...|+||++||++||++||||||||||||++++.. +..+.|.|+.+|+.||.+|++++++|+|+
T Consensus 437 d~~sa~~~P~~~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~ 516 (758)
T PLN02352 437 DHVSASHMPRNLPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVY 516 (758)
T ss_pred CccccccCCCCCchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEE
Confidence 9999863 23699999999999999999999999999987532 34689999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCC--CccceeeEeeeccccccCCCCCcc-----
Q 001225 842 VVLPLIPGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGP--KTRDYISFYGLRSYGRLCDGGPVA----- 914 (1120)
Q Consensus 842 IVlP~~P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~--~~~~Yi~f~~Lr~~~~~~~~g~~v----- 914 (1120)
||+|++|++ +.+ +.++++||+|||+||++++.+|.+.|++ +|. +|.+||+|||||+|+....+. ++
T Consensus 517 IViP~~PeG---~~e--~~~vq~il~wq~~TM~~~y~~I~~~L~~-~g~~~~P~dYl~F~cL~n~e~~~~g~-~~~~~~p 589 (758)
T PLN02352 517 ILIPMWPEG---VPE--SEPVQDILHWTRETMAMMYKLIGEAIQE-SGEPGHPRDYLNFFCLANREEKRKGE-FVPPYSP 589 (758)
T ss_pred EEECCCCCC---Ccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCccCChhHheeeecccccccccCCc-cccccCC
Confidence 999999973 233 5789999999999999999999999998 674 689999999999997653322 11
Q ss_pred -------------ccceeeeeeEEEEeccEEEEcccccccCCCCCCCCceeeEEEEccchhhcccCCCCcchhhhHHHHH
Q 001225 915 -------------TSQVYVHSKVMIIDDRAALIGSSNINDRSLLGSRDSEIDVVIEDKEFLESSMNGEPWKAGKFSHSLR 981 (1120)
Q Consensus 915 -------------te~iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~~v~s~M~G~~~~agkfa~~LR 981 (1120)
.++||||||+|||||+++||||||||+|||.|+||||||+.+++++...+.| .++++++||
T Consensus 590 ~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~~~------~~~~i~~~R 663 (758)
T PLN02352 590 HQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTNTN------NPRDIQAYR 663 (758)
T ss_pred CCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCCCcc------cchHHHHHH
Confidence 2479999999999999999999999999999999999999999988665544 457899999
Q ss_pred HHHHHhhcCCCcCcccccCCCCchhHHHHHHHHHHHHHHHHHh
Q 001225 982 CFLWAEHLGLHAGEISRISDPLADTTYRDLWQATAEENTLIYE 1024 (1120)
Q Consensus 982 ~~L~~eHlG~~~~~~~~~~dp~~~~~~~~~W~~~a~~Nt~iy~ 1024 (1120)
++||+||||+..+ ...+|-+.+..+.+ +.+|..|..+|-
T Consensus 664 ~~L~~EHLG~~~~---~f~~p~s~ec~~~v-~~~~~~~w~~y~ 702 (758)
T PLN02352 664 MSLWYEHTGLDEE---SFLEPESLECVRRL-RTIGEQMWEIYS 702 (758)
T ss_pred HHHHHHHhCCCHH---HhcCCCCHHHHHHH-HHHHHHHHHhhc
Confidence 9999999999864 57899999998887 888888877653
No 4
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=2.5e-94 Score=863.25 Aligned_cols=546 Identities=31% Similarity=0.479 Sum_probs=407.2
Q ss_pred EEEEecChhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEecHH--------------------HH
Q 001225 327 IKLRTTNSGKVKEWVAAINDAGLRPLEGWCHPHRFGSYAPPRGLTEDGSQAQWFIDGQ--------------------AA 386 (1120)
Q Consensus 327 l~l~~~s~~~~~~w~~~i~~~~~~~~~~~~~~~rf~sfap~r~~~~~gn~v~~lvDG~--------------------~y 386 (1120)
+.|+...-.+..-|...+.......+ -+ ..|.|.| .|+.|++|-|.. .+
T Consensus 172 v~lqf~pv~~~~~~~~gv~~~~~~~g------vp-~t~Fp~r----~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rc 240 (868)
T PLN03008 172 IDMKFTPFDQIHSYRCGIAGDPERRG------VR-RTYFPVR----KGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKC 240 (868)
T ss_pred EEEEEEEccccccccccccCCcCCCC------CC-CccccCC----CCCEeEEeccCCCCCCCCCccccCCCcccccccc
Confidence 44555555555667766654211111 11 3678888 799999998864 57
Q ss_pred HHHHHHHHHhhceEEEEeeecCCceEEEEcCCC--CCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhh--c-------
Q 001225 387 FEAIASAIKNAKSQILITGWWLCPELYLIRPFE--NHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKI--N------- 455 (1120)
Q Consensus 387 f~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~--~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~--~------- 455 (1120)
+++|++||++||+.|||+|||++||+||+|++. .+...+|+++|++||++||+|+|||||++.+...+ .
T Consensus 241 wedi~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~t 320 (868)
T PLN03008 241 WEDICYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGT 320 (868)
T ss_pred HHHHHHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccc
Confidence 999999999999999999999999999999852 24578999999999999999999999998754211 1
Q ss_pred -chhhHHHHHcccCCeEEEEcCCC------C--------------CcccccccCcceEEEEeCC--------eEEEcccc
Q 001225 456 -SMYSKKRLLKIHENVKVLRHPDH------V--------------STGVYLWSHHEKLVIVDYR--------ISFIGGLD 506 (1120)
Q Consensus 456 -s~~~k~~L~~~~~nI~V~r~P~~------~--------------~~~~~~~rhH~KivVID~~--------vAFvGGin 506 (1120)
...+.+.+ .|+++.+...|.. + ....++|+||||+||||+. +|||||+|
T Consensus 321 hdeet~~~f--~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiD 398 (868)
T PLN03008 321 HDEETRKFF--KHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLD 398 (868)
T ss_pred ccHHHHHhh--cCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEccee
Confidence 11222222 4889998888742 0 0113679999999999985 99999999
Q ss_pred CCCCCcCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHh
Q 001225 507 LCFGRYDTIEHKVGDCPPSLWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNH 586 (1120)
Q Consensus 507 L~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~ 586 (1120)
||+|||||++|++++...+.|+ +||.|++.. ++...|++||||+|++|+||+|.+|+++|.+||+.
T Consensus 399 Lc~gRwDT~~H~l~~~l~t~~~-~D~~np~~~-------------~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~ 464 (868)
T PLN03008 399 LCDGRYDTPEHRILHDLDTVFK-DDFHNPTFP-------------AGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRK 464 (868)
T ss_pred ccCCccCCcCCCcccccccccc-ccccCcccc-------------CCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999999887777777 899998632 34567899999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCcccCCccccccccccccccccccCcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 001225 587 AKRSKAPNEQNIPLLIPHHHMVLPHYMGRSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDD 666 (1120)
Q Consensus 587 ~~~~k~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~ 666 (1120)
+++.+..... . +++ ....++....+.|...+ +.|..... ..
T Consensus 465 aTg~~~~~~~-~-----------------k~~----~~~~~d~l~~~~~~~~~-----------~~p~~~~~----~~-- 505 (868)
T PLN03008 465 ATRWKEFSLR-L-----------------KGK----THWQDDALIRIGRISWI-----------LSPVFKFL----KD-- 505 (868)
T ss_pred hhCccccccc-c-----------------ccc----cccccchhcchhhcccc-----------cCCCcccc----cc--
Confidence 9875421000 0 000 00000111111221111 11110000 00
Q ss_pred CCCCCCCCcccccccccCCCcccCCCCcccccccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhccccc
Q 001225 667 KSNGLNTNHNILDRTSGFYGSCTIPSNEYKTEALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENH 746 (1120)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1120)
+... .+ .+ ....|. ..
T Consensus 506 ---~~~~------------~~--------------~~------------------------------~~~~~~-~~---- 521 (868)
T PLN03008 506 ---GTSI------------IP--------------ED------------------------------DPCVWV-SK---- 521 (868)
T ss_pred ---cccc------------cc--------------CC------------------------------CCccCc-cc----
Confidence 0000 00 00 000000 00
Q ss_pred cccccccCCCCCCCcceEEEeecCcccCCCC-C-----------------CchhHHHHHHHHHHHhccCeEEEEeeeecc
Q 001225 747 DIYSSKCGQVGPRLACRCQIIRSVSQWSAGT-S-----------------QTEGSIHSAYCSLIESAEHFIYIENQFFIS 808 (1120)
Q Consensus 747 ~~~~~~~~~~~~~~~~~vQilRS~~~WS~G~-~-----------------~~E~sI~~ayl~aI~~A~h~IYIEnQyFis 808 (1120)
-+..+++.||++||++.||+.. + .+|+||++||++||++||||||||||||++
T Consensus 522 ---------~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFis 592 (868)
T PLN03008 522 ---------EDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLG 592 (868)
T ss_pred ---------cCCCCccccceeeecCchhhcCCCCCcchhhhhccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhc
Confidence 0123567899999999999732 2 268999999999999999999999999999
Q ss_pred CCC-----CChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHH
Q 001225 809 GLS-----GDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHK 883 (1120)
Q Consensus 809 ~~~-----~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~ 883 (1120)
++. .+..+.|.|..||+.||.+|++++++|+|+||+|.+|+ |+ ++++++|+||+||++||++|+.+|+++
T Consensus 593 s~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~pe--G~---~~sg~vq~Il~wq~~TM~~~~~~I~~~ 667 (868)
T PLN03008 593 SSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPE--GD---PKSGPVQEILYWQSQTMQMMYDVIAKE 667 (868)
T ss_pred cccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCC--CC---CCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 853 24468999999999999999999999999999999996 33 345689999999999999999999999
Q ss_pred HHhhhC--CCccceeeEeeeccccccCC-----CCCcccc-------ceeeeeeEEEEeccEEEEcccccccCCCCCCCC
Q 001225 884 LSMLLG--PKTRDYISFYGLRSYGRLCD-----GGPVATS-------QVYVHSKVMIIDDRAALIGSSNINDRSLLGSRD 949 (1120)
Q Consensus 884 L~~~~G--~~~~~Yi~f~~Lr~~~~~~~-----~g~~vte-------~iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~D 949 (1120)
|++ .| .++.+|++||+||+++.+.+ .+..+++ +||||||+|||||++++|||||||+|||.|+||
T Consensus 668 L~~-~~~d~~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd 746 (868)
T PLN03008 668 LKA-VQSDAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAKGMIVDDEYVLMGSANINQRSMAGTKD 746 (868)
T ss_pred HHh-hcccCCccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeeeEEEECCCEEEEeccccCHhhccCCCC
Confidence 998 54 46789999999999976632 2223333 799999999999999999999999999999999
Q ss_pred ceeeEEEEccchhhcccCCCCcchhhhHHHHHHHHHHhhcCCCcCcccccCCCCchhHHHHHHHHHHHHHHHHHh
Q 001225 950 SEIDVVIEDKEFLESSMNGEPWKAGKFSHSLRCFLWAEHLGLHAGEISRISDPLADTTYRDLWQATAEENTLIYE 1024 (1120)
Q Consensus 950 sEi~v~i~D~~~v~s~M~G~~~~agkfa~~LR~~L~~eHlG~~~~~~~~~~dp~~~~~~~~~W~~~a~~Nt~iy~ 1024 (1120)
|||++.++++...-+.+++. +...++.||++||+||||+.++ .+.+|.+.+..+.+ +.+|..|.+.|-
T Consensus 747 ~E~~~~~~~~~~~~~~~~~~---~rg~I~g~R~sLwaEHLG~~~~---~~~~p~s~ecv~~v-n~~a~~~w~~y~ 814 (868)
T PLN03008 747 TEIAMGAYQPNHTWAHKGRH---PRGQVYGYRMSLWAEHLGKTGD---EFVEPSDLECLKKV-NTISEENWKRFI 814 (868)
T ss_pred ceEeEEeccccccccccCcc---hhhHHHHHHHHHHHHHhCCCHH---HccCCCCHHHHHHH-HHHHHHHHHHhh
Confidence 99999999987665444443 3457999999999999999875 46899999998887 889998887753
No 5
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=3.8e-87 Score=802.40 Aligned_cols=514 Identities=30% Similarity=0.484 Sum_probs=386.4
Q ss_pred EEEEecChhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEecHH--------------------HH
Q 001225 327 IKLRTTNSGKVKEWVAAINDAGLRPLEGWCHPHRFGSYAPPRGLTEDGSQAQWFIDGQ--------------------AA 386 (1120)
Q Consensus 327 l~l~~~s~~~~~~w~~~i~~~~~~~~~~~~~~~rf~sfap~r~~~~~gn~v~~lvDG~--------------------~y 386 (1120)
+.++.....+..-|...+.... +.. -+ ..|.|.| .|+.|++|-|.. .+
T Consensus 143 ~~~~f~~~~~~~~~~~gv~~~~------~~g-vp-~t~f~~r----~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~c 210 (808)
T PLN02270 143 VKLQYFEVTKDRNWGRGIRSAK------FPG-VP-YTFFSQR----QGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRC 210 (808)
T ss_pred EEEEEEEcccCcchhcccCCcC------cCC-CC-CcccccC----CCCeeEEeccccCCCCCCCccccCCCcccchhhh
Confidence 4555555666666877773321 111 11 3678888 789999998863 46
Q ss_pred HHHHHHHHHhhceEEEEeeecCCceEEEEcCCC---CCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhc--------
Q 001225 387 FEAIASAIKNAKSQILITGWWLCPELYLIRPFE---NHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKIN-------- 455 (1120)
Q Consensus 387 f~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~---~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~-------- 455 (1120)
++++++||.+||++|||+|||++|+++|+|+.. .+...+|+++|++||++||+|+||+||+..+...+.
T Consensus 211 wedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~~k~~g~m~th 290 (808)
T PLN02270 211 WEDVFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDLLKKDGLMATH 290 (808)
T ss_pred HHHHHHHHHhhhcEEEEEEeecCCCceEecCCCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchhhccccccccC
Confidence 999999999999999999999999999998532 234579999999999999999999999875421111
Q ss_pred chhhHHHHHcccCCeEEEE---cCCCC------CcccccccCcceEEEEeCC-----------eEEEccccCCCCCcCCC
Q 001225 456 SMYSKKRLLKIHENVKVLR---HPDHV------STGVYLWSHHEKLVIVDYR-----------ISFIGGLDLCFGRYDTI 515 (1120)
Q Consensus 456 s~~~k~~L~~~~~nI~V~r---~P~~~------~~~~~~~rhH~KivVID~~-----------vAFvGGinL~~GRwDt~ 515 (1120)
...+++.+ .+.+|++.. +|+.- ......++||||+||||+. +|||||+|||+|||||+
T Consensus 291 d~~t~~~f--~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~ 368 (808)
T PLN02270 291 DEETENFF--RGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTP 368 (808)
T ss_pred HHHHHHHh--ccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCc
Confidence 11222222 245666543 44311 0123579999999999998 99999999999999999
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhcCCCCCC
Q 001225 516 EHKVGDCPPSLWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNE 595 (1120)
Q Consensus 516 ~H~l~D~~~~~~pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~ 595 (1120)
+|++++..... +++||.|+++.+ ..++.+.||+||||+|++|+||+|.+|+++|.+||+.++++...
T Consensus 369 ~H~lf~~Ldt~-h~~Df~~p~~~~----------~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll-- 435 (808)
T PLN02270 369 FHSLFRTLDTA-HHDDFHQPNFTG----------ASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDIL-- 435 (808)
T ss_pred ccccccccccc-ccccccCccccc----------ccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccch--
Confidence 99998765443 467887765432 11234678999999999999999999999999999998754321
Q ss_pred CCCCcccCCccccccccccccccccccCcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCc
Q 001225 596 QNIPLLIPHHHMVLPHYMGRSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDDKSNGLNTNH 675 (1120)
Q Consensus 596 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~ 675 (1120)
.+. .+.. ..++|+....
T Consensus 436 ------~~~-----------------------------~~~~-----------~~~~P~~~~~----------------- 452 (808)
T PLN02270 436 ------VQL-----------------------------RELE-----------DVIIPPSPVM----------------- 452 (808)
T ss_pred ------hhh-----------------------------cccc-----------cccCCCCccc-----------------
Confidence 000 0000 0001110000
Q ss_pred ccccccccCCCcccCCCCcccccccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhccccccccccccCC
Q 001225 676 NILDRTSGFYGSCTIPSNEYKTEALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSSKCGQ 755 (1120)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (1120)
|
T Consensus 453 ---------------------------------------------------------------~---------------- 453 (808)
T PLN02270 453 ---------------------------------------------------------------F---------------- 453 (808)
T ss_pred ---------------------------------------------------------------C----------------
Confidence 0
Q ss_pred CCCCCcceEEEeecCcccCC-CC-----------------CCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCC----
Q 001225 756 VGPRLACRCQIIRSVSQWSA-GT-----------------SQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGD---- 813 (1120)
Q Consensus 756 ~~~~~~~~vQilRS~~~WS~-G~-----------------~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~---- 813 (1120)
....+++.||++||++.+++ |. ...|+||+.||++||++|+||||||||||++++..+
T Consensus 454 p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~ 533 (808)
T PLN02270 454 PDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADG 533 (808)
T ss_pred CCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccc
Confidence 00124577888888865442 21 124789999999999999999999999999985432
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 001225 814 -----ETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLL 888 (1120)
Q Consensus 814 -----~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~ 888 (1120)
-...|.|..+|+.||+++++++++|+|+||+|.+|+ ++.+ +.++|+||+||++||++++.+|++.|++ .
T Consensus 534 ~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~pe---G~~e--~~~vq~il~wq~~TM~~~~~~I~~~Lk~-~ 607 (808)
T PLN02270 534 IKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPE---GIPE--SGSVQAILDWQRRTMEMMYKDVIQALRA-K 607 (808)
T ss_pred cccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCC---CCcc--cchHHHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence 135689999999999999999999999999999996 3433 5689999999999999999999999999 6
Q ss_pred CC--CccceeeEeeeccccccCCC--CCc---------------cccceeeeeeEEEEeccEEEEcccccccCCCCCCCC
Q 001225 889 GP--KTRDYISFYGLRSYGRLCDG--GPV---------------ATSQVYVHSKVMIIDDRAALIGSSNINDRSLLGSRD 949 (1120)
Q Consensus 889 G~--~~~~Yi~f~~Lr~~~~~~~~--g~~---------------vte~iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~D 949 (1120)
|. ++.+|++||+|++++....+ .|. ..++||||||+|||||++++|||||||+|||.|++|
T Consensus 608 g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rD 687 (808)
T PLN02270 608 GLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARD 687 (808)
T ss_pred CccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCcc
Confidence 65 78999999999988653211 011 124799999999999999999999999999999999
Q ss_pred ceeeEEEEccchhhcccCCCCcchhhhHHHHHHHHHHhhcCCCcCcccccCCCCchhHHHHHHHHHHHHHHHHHh
Q 001225 950 SEIDVVIEDKEFLESSMNGEPWKAGKFSHSLRCFLWAEHLGLHAGEISRISDPLADTTYRDLWQATAEENTLIYE 1024 (1120)
Q Consensus 950 sEi~v~i~D~~~v~s~M~G~~~~agkfa~~LR~~L~~eHlG~~~~~~~~~~dp~~~~~~~~~W~~~a~~Nt~iy~ 1024 (1120)
|||++..+++....+ +. .++.+++.||++||+||||+..+ .+.+|.+.+..+.+ +.+|..|.++|-
T Consensus 688 SEIam~a~qp~~~~~---~~--~~r~~i~~~R~~Lw~EHLG~~~~---~f~~p~s~~cv~~v-~~~a~~~w~~y~ 753 (808)
T PLN02270 688 SEIAMGGYQPYHLST---RQ--PARGQIHGFRMSLWYEHLGMLDE---TFLDPESEECIQKV-NQIADKYWDLYS 753 (808)
T ss_pred chhhhcccCcccccc---cc--chHHHHHHHHHHHHHHHhCCChh---HhhCCCcHHHHHHH-HHHHHHHHHHhc
Confidence 999998766543322 11 45679999999999999999764 47899999998775 999999987764
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=3.7e-48 Score=461.74 Aligned_cols=325 Identities=24% Similarity=0.404 Sum_probs=248.7
Q ss_pred CCceEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhh
Q 001225 373 DGSQAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIAL 452 (1120)
Q Consensus 373 ~gn~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al 452 (1120)
.||.+++|.||+++|.++.++|++||++|+| ++|++++ |..+.++.++|.+||+|||+|||| +|..++.
T Consensus 138 ~~n~~~ll~~g~~~~~~l~~~I~~Ak~~I~i-------~~yi~~~--d~~g~~i~~aL~~aa~rGV~VRiL-~D~~Gs~- 206 (509)
T PRK12452 138 DRTTTKLLTNGDQTFSEILQAIEQAKHHIHI-------QYYIYKS--DEIGTKVRDALIKKAKDGVIVRFL-YDGLGSN- 206 (509)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhCCEEEE-------EEEEEeC--CcHHHHHHHHHHHHHHCCCEEEEE-EECCCCC-
Confidence 6999999999999999999999999999999 8999997 788999999999999999999998 5777653
Q ss_pred hhcchhhHHHHHcccCCeEEEEc-CCCC--CcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCC
Q 001225 453 KINSMYSKKRLLKIHENVKVLRH-PDHV--STGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPG 529 (1120)
Q Consensus 453 ~~~s~~~k~~L~~~~~nI~V~r~-P~~~--~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG 529 (1120)
.+++.+. +.|. .+||+|..| |... .....++|||||++||||++||+||+|+.
T Consensus 207 ~~~~~~~-~~L~--~aGi~v~~f~P~~~~~~~~~~n~RnHRKi~VIDg~ia~~GG~Ni~--------------------- 262 (509)
T PRK12452 207 TLRRRFL-QPMK--EAGIEIVEFDPIFSAWLLETVNYRNHRKIVIVDGEIGFTGGLNVG--------------------- 262 (509)
T ss_pred CCCHHHH-HHHH--hCCeEEEEecCcccccccccccCCCCCeEEEEcCCEEEeCCcccc---------------------
Confidence 2333332 3444 478998766 5322 12346899999999999999999999995
Q ss_pred CCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccCCccccc
Q 001225 530 KDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPHHHMVL 609 (1120)
Q Consensus 530 ~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~~~ 609 (1120)
++|.+. ..+..+|||+|++++||+|.+++.+|.++|+++++...+ + +
T Consensus 263 d~y~~~-------------------~~~~~~WrD~~~~i~Gp~V~~l~~~F~~dW~~~~~~~~~---------~-~---- 309 (509)
T PRK12452 263 DEYLGR-------------------SKKFPVWRDSHLKVEGKALYKLQAIFLEDWLYASSGLNT---------Y-S---- 309 (509)
T ss_pred hhhcCC-------------------CCCCCCceEEEEEEECHHHHHHHHHHHHHHHHhhCcccc---------c-c----
Confidence 455542 113468999999999999999999999999987642100 0 0
Q ss_pred cccccccccccccCcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCcccccccccCCCccc
Q 001225 610 PHYMGRSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDDKSNGLNTNHNILDRTSGFYGSCT 689 (1120)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1120)
+.. ....+. .|+.
T Consensus 310 -----------------------------~~~---~~~~~~-~~~~---------------------------------- 322 (509)
T PRK12452 310 -----------------------------WDP---FMNRQY-FPGK---------------------------------- 322 (509)
T ss_pred -----------------------------ccc---ccchhc-CCCc----------------------------------
Confidence 000 000000 0000
Q ss_pred CCCCcccccccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhccccccccccccCCCCCCCcceEEEeec
Q 001225 690 IPSNEYKTEALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSSKCGQVGPRLACRCQIIRS 769 (1120)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS 769 (1120)
.. ..+.+.+|++.|
T Consensus 323 -----------------------------------------------------------------~~-~~~~~~~q~~~s 336 (509)
T PRK12452 323 -----------------------------------------------------------------EI-SNAEGAVQIVAS 336 (509)
T ss_pred -----------------------------------------------------------------cc-cCCCeEEEEEeC
Confidence 00 012357899998
Q ss_pred CcccCCCCCCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCC
Q 001225 770 VSQWSAGTSQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPG 849 (1120)
Q Consensus 770 ~~~WS~G~~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~ 849 (1120)
|+...+.+|.++|+++|.+|+++|||+||||+++ ..+.+||..+ +.+||+|+|++|..|+
T Consensus 337 ------gp~~~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd--------~~l~~aL~~A------a~rGV~Vrii~p~~~D 396 (509)
T PRK12452 337 ------GPSSDDKSIRNTLLAVMGSAKKSIWIATPYFIPD--------QETLTLLRLS------AISGIDVRILYPGKSD 396 (509)
T ss_pred ------CCCchhHHHHHHHHHHHHHhhhEEEEECCccCCC--------HHHHHHHHHH------HHcCCEEEEEcCCCCC
Confidence 5555677999999999999999999999999986 2577777653 4579999999997654
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEec
Q 001225 850 FQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDD 929 (1120)
Q Consensus 850 f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD 929 (1120)
. ..++|. ..++++.|.+ +|++++.| .++ ++|+|+|||||
T Consensus 397 ---------~----~~~~~a-------~~~~~~~L~~-aGv~I~~y-------------~~~-------~lHaK~~ivD~ 435 (509)
T PRK12452 397 ---------S----IISDQA-------SQSYFTPLLK-AGASIYSY-------------KDG-------FMHAKIVLVDD 435 (509)
T ss_pred ---------h----HHHHHH-------HHHHHHHHHH-cCCEEEEe-------------cCC-------CeeeeEEEECC
Confidence 1 122232 3467788988 79988766 233 89999999999
Q ss_pred cEEEEcccccccCCCCCCCCceeeEEEEccch
Q 001225 930 RAALIGSSNINDRSLLGSRDSEIDVVIEDKEF 961 (1120)
Q Consensus 930 ~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~~ 961 (1120)
++++|||+|||.||+. .|.|+++++.|++.
T Consensus 436 ~~a~vGS~Nld~RS~~--~n~E~~~~i~~~~~ 465 (509)
T PRK12452 436 KIATIGTANMDVRSFE--LNYEIISVLYESET 465 (509)
T ss_pred CEEEEeCcccCHhHhh--hhhhccEEEECHHH
Confidence 9999999999999995 99999999999874
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.8e-47 Score=454.43 Aligned_cols=321 Identities=26% Similarity=0.463 Sum_probs=247.6
Q ss_pred CCceEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhh
Q 001225 373 DGSQAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIAL 452 (1120)
Q Consensus 373 ~gn~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al 452 (1120)
.||.+++|+||+++|++|.++|++||++|+| ++|++++ |..+.++.++|.+||+|||+|||| ||.+++..
T Consensus 114 ~~n~v~ll~~g~~~~~~l~~~I~~Ak~~I~l-------~~yi~~~--d~~g~~i~~aL~~aa~rGV~VriL-~D~~Gs~~ 183 (483)
T PRK01642 114 KGNQLRLLTNGDETFQAIIRDIELARHYILM-------EFYIWRP--DGLGDQVAEALIAAAKRGVRVRLL-YDSIGSFA 183 (483)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHHhhcEEEE-------EEEEEcc--CCcHHHHHHHHHHHHHCCCEEEEE-EECCCCCC
Confidence 6999999999999999999999999999999 8999986 778899999999999999999998 57766531
Q ss_pred hhcchhhHHHHHcccCCeEEEEc-CCC-C--CcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCC
Q 001225 453 KINSMYSKKRLLKIHENVKVLRH-PDH-V--STGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWP 528 (1120)
Q Consensus 453 ~~~s~~~k~~L~~~~~nI~V~r~-P~~-~--~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~p 528 (1120)
..++.+. +.|.+ +||+|..+ |.. + ....+++|+|+|++||||++||+||+|++..
T Consensus 184 ~~~~~~~-~~L~~--~Gi~v~~~~p~~~~~~~~~~~n~RnHrKi~VIDg~ia~~Gg~Ni~d~------------------ 242 (483)
T PRK01642 184 FFRSPYP-EELRN--AGVEVVEFLKVNLGRVFRRRLDLRNHRKIVVIDGYIAYTGSMNVVDP------------------ 242 (483)
T ss_pred CCcHHHH-HHHHH--CCCEEEEecCCCcccccccccccccCceEEEEcCCEEEeCCcccCCH------------------
Confidence 1122232 34543 78998877 642 1 2235678999999999999999999999521
Q ss_pred CCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccCCcccc
Q 001225 529 GKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPHHHMV 608 (1120)
Q Consensus 529 G~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~~ 608 (1120)
+|.+. ....++|+|++++++||+|.+++..|.++|++++++... +
T Consensus 243 --~y~~~-------------------~~~~~~w~D~~~~i~Gp~v~~l~~~F~~dW~~~~~~~~~---------~----- 287 (483)
T PRK01642 243 --EYFKQ-------------------DPGVGQWRDTHVRIEGPVVTALQLIFAEDWEWETGERIL---------P----- 287 (483)
T ss_pred --HHhCC-------------------CCCCCCcEEEEEEEEcHHHHHHHHHHHHHHHHHhCcccC---------C-----
Confidence 44431 113458999999999999999999999999987643100 0
Q ss_pred ccccccccccccccCcccccccccccccCCCCCCCCCCCCCC-CCCCcccccCCCCCCCCCCCCCCCcccccccccCCCc
Q 001225 609 LPHYMGRSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPL-LLPQESDKLVAPNVDDKSNGLNTNHNILDRTSGFYGS 687 (1120)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1120)
..|. ..+ |
T Consensus 288 --------------------------------------~~~~~~~~---------------------------------~ 296 (483)
T PRK01642 288 --------------------------------------PPPDVLIM---------------------------------P 296 (483)
T ss_pred --------------------------------------CCcccccC---------------------------------C
Confidence 0000 000 0
Q ss_pred ccCCCCcccccccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhccccccccccccCCCCCCCcceEEEe
Q 001225 688 CTIPSNEYKTEALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSSKCGQVGPRLACRCQII 767 (1120)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQil 767 (1120)
....+.+.||++
T Consensus 297 --------------------------------------------------------------------~~~~~~~~~qi~ 308 (483)
T PRK01642 297 --------------------------------------------------------------------FEEASGHTVQVI 308 (483)
T ss_pred --------------------------------------------------------------------ccCCCCceEEEE
Confidence 000123578999
Q ss_pred ecCcccCCCCCCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCC
Q 001225 768 RSVSQWSAGTSQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLI 847 (1120)
Q Consensus 768 RS~~~WS~G~~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~ 847 (1120)
.| |+...+.+++++|+++|.+|+++|||++|||+++ ..|.+||..+ +.+||+|.||+|..
T Consensus 309 ~s------gP~~~~~~~~~~~~~~I~~A~~~I~I~tpYfip~--------~~i~~aL~~A------a~rGV~Vril~p~~ 368 (483)
T PRK01642 309 AS------GPGDPEETIHQFLLTAIYSARERLWITTPYFVPD--------EDLLAALKTA------ALRGVDVRIIIPSK 368 (483)
T ss_pred eC------CCCChhhHHHHHHHHHHHHhccEEEEEcCCcCCC--------HHHHHHHHHH------HHcCCEEEEEeCCC
Confidence 87 6656678999999999999999999999999986 2677888654 45799999999987
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEE
Q 001225 848 PGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMII 927 (1120)
Q Consensus 848 P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIV 927 (1120)
++ . .+..|. ..+++.+|.+ +|++++.| .+| ++|||+|||
T Consensus 369 ~d---------~----~~~~~~-------~~~~~~~L~~-~Gv~I~~y-------------~~~-------~~HaK~~iv 407 (483)
T PRK01642 369 ND---------S----LLVFWA-------SRAFFTELLE-AGVKIYRY-------------EGG-------LLHTKSVLV 407 (483)
T ss_pred CC---------c----HHHHHH-------HHHHHHHHHH-cCCEEEEe-------------CCC-------ceEeEEEEE
Confidence 54 1 122232 2356788888 79888765 244 899999999
Q ss_pred eccEEEEcccccccCCCCCCCCceeeEEEEccch
Q 001225 928 DDRAALIGSSNINDRSLLGSRDSEIDVVIEDKEF 961 (1120)
Q Consensus 928 DD~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~~ 961 (1120)
||++++|||+|+|.||+. .|.|++++|+|+++
T Consensus 408 D~~~~~vGS~N~d~rS~~--~N~E~~~~i~d~~~ 439 (483)
T PRK01642 408 DDELALVGTVNLDMRSFW--LNFEITLVIDDTGF 439 (483)
T ss_pred CCCEEEeeCCcCCHhHHh--hhhcceEEEECHHH
Confidence 999999999999999995 99999999999874
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=2.8e-45 Score=426.35 Aligned_cols=319 Identities=23% Similarity=0.360 Sum_probs=238.3
Q ss_pred CCCceEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhh
Q 001225 372 EDGSQAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIA 451 (1120)
Q Consensus 372 ~~gn~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~a 451 (1120)
+.||.+++|.||+++|.+++++|++||++|+| ++|++.+ |..+..|.++|.+||+|||+|+||+ |..++.
T Consensus 5 ~~gN~v~ll~~G~e~~~~l~~~I~~Ak~~I~i-------~~yi~~~--d~~g~~l~~aL~~aa~rGV~Vril~-D~~gs~ 74 (411)
T PRK11263 5 REGNRIQLLENGEQYYPRVFEAIAAAQEEILL-------ETFILFE--DKVGKQLHAALLAAAQRGVKVEVLV-DGYGSP 74 (411)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhCCEEEE-------EEEEEec--CchHHHHHHHHHHHHHCCCEEEEEE-ECCCCC
Confidence 37999999999999999999999999999999 8888886 6788999999999999999999996 555432
Q ss_pred hhhcchhhHHHHHcccCCeEEEEc-CCC-CCc--ccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCC
Q 001225 452 LKINSMYSKKRLLKIHENVKVLRH-PDH-VST--GVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLW 527 (1120)
Q Consensus 452 l~~~s~~~k~~L~~~~~nI~V~r~-P~~-~~~--~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~ 527 (1120)
.++..+. ..|. .+||+|..+ |.. +.. ..++.++|+|++|||+++||+||+|++
T Consensus 75 -~~~~~~~-~~L~--~aGv~v~~~~p~~~~~~~~~~~~~R~HrKiiVIDg~~a~vGg~N~~------------------- 131 (411)
T PRK11263 75 -DLSDEFV-NELT--AAGVRFRYFDPRPRLLGMRTNLFRRMHRKIVVIDGRIAFVGGINYS------------------- 131 (411)
T ss_pred -CCCHHHH-HHHH--HCCeEEEEeCCcccccccccccccCCcceEEEEcCCEEEEcCeEch-------------------
Confidence 2233332 3343 478998766 532 111 123459999999999999999999996
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccCCccc
Q 001225 528 PGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPHHHM 607 (1120)
Q Consensus 528 pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~ 607 (1120)
++|.+. .+..+|+|++++|+||+|.+++..|.+.|+...... .+
T Consensus 132 --~~~~~~--------------------~g~~~w~D~~v~i~Gp~V~~l~~~f~~~w~~~~~~~-------~~------- 175 (411)
T PRK11263 132 --ADHLSD--------------------YGPEAKQDYAVEVEGPVVADIHQFELEALPGQSAAR-------RW------- 175 (411)
T ss_pred --Hhhccc--------------------cCCCCceEEEEEEECHHHHHHHHHHHHHHhhcccch-------hh-------
Confidence 234321 122479999999999999999999999996421000 00
Q ss_pred cccccccccccccccCcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCcccccccccCCCc
Q 001225 608 VLPHYMGRSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDDKSNGLNTNHNILDRTSGFYGS 687 (1120)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1120)
+. ..+. .+ .
T Consensus 176 -------------------------------~~------~~~~-~~-~-------------------------------- 184 (411)
T PRK11263 176 -------------------------------WR------RHHR-AE-E-------------------------------- 184 (411)
T ss_pred -------------------------------hc------cccc-Cc-c--------------------------------
Confidence 00 0000 00 0
Q ss_pred ccCCCCcccccccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhccccccccccccCCCCCCCcceEEEe
Q 001225 688 CTIPSNEYKTEALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSSKCGQVGPRLACRCQII 767 (1120)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQil 767 (1120)
....+...+|++
T Consensus 185 --------------------------------------------------------------------~~~~g~~~~~~v 196 (411)
T PRK11263 185 --------------------------------------------------------------------NRQPGEAQALLV 196 (411)
T ss_pred --------------------------------------------------------------------cCCCCCeEEEEE
Confidence 001133467777
Q ss_pred ecCcccCCCCCCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCC
Q 001225 768 RSVSQWSAGTSQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLI 847 (1120)
Q Consensus 768 RS~~~WS~G~~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~ 847 (1120)
-+ |+......|+.+|+.+|.+|++.|||+||||+++ ..|.+||..+ +++||+|.||+|..
T Consensus 197 ~~------~p~~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~--------~~l~~aL~~A------a~RGV~V~ii~~~~ 256 (411)
T PRK11263 197 WR------DNEEHRDDIERHYLKALRQARREVIIANAYFFPG--------YRLLRALRNA------ARRGVRVRLILQGE 256 (411)
T ss_pred EC------CCcchHHHHHHHHHHHHHHhceEEEEEecCcCCC--------HHHHHHHHHH------HHCCCEEEEEeCCC
Confidence 65 3334566899999999999999999999999986 2577887654 45799999999976
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEE
Q 001225 848 PGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMII 927 (1120)
Q Consensus 848 P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIV 927 (1120)
|+ . .++.|. ...++..|.+ .|+++++| .++ ++|||+|||
T Consensus 257 ~d---------~----~~~~~a-------~~~~~~~Ll~-~Gv~I~~y-------------~~~-------~lHaK~~vi 295 (411)
T PRK11263 257 PD---------M----PIVRVG-------ARLLYNYLLK-GGVQIYEY-------------CRR-------PLHGKVALM 295 (411)
T ss_pred CC---------c----HHHHHH-------HHHHHHHHHH-CCCEEEEe-------------cCC-------CceeEEEEE
Confidence 54 1 122222 2356788888 79988766 233 899999999
Q ss_pred eccEEEEcccccccCCCCCCCCceeeEEEEccch
Q 001225 928 DDRAALIGSSNINDRSLLGSRDSEIDVVIEDKEF 961 (1120)
Q Consensus 928 DD~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~~ 961 (1120)
||++++|||+|||.||| ..|.|++++|+|+++
T Consensus 296 D~~~~~vGS~Nld~rS~--~lN~E~~~~i~d~~~ 327 (411)
T PRK11263 296 DDHWATVGSSNLDPLSL--SLNLEANLIIRDRAF 327 (411)
T ss_pred CCCEEEEeCCcCCHHHh--hhhhhcCEEEeCHHH
Confidence 99999999999999999 499999999999883
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=2.6e-37 Score=362.46 Aligned_cols=331 Identities=29% Similarity=0.466 Sum_probs=238.9
Q ss_pred CCceEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhh
Q 001225 373 DGSQAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIAL 452 (1120)
Q Consensus 373 ~gn~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al 452 (1120)
.++.++++.+|.++|.++.++|++|+++|+| ++|++.+ +..+.++.++|.++|++||+||+++ |..+...
T Consensus 58 ~~~~~~~l~~~~~~~~~~~~~i~~a~~~I~~-------~~~i~~~--d~~~~~i~~~l~~~a~~gv~vr~l~-D~~~~~~ 127 (438)
T COG1502 58 SGNGVDLLKDGADAFAALIELIEAAKKSIYL-------QYYIWQD--DELGREILDALIEAAKRGVEVRLLL-DDIGSTR 127 (438)
T ss_pred CCCceEEecCHHHHHHHHHHHHHHHhhEEEE-------EEEEEeC--ChhHHHHHHHHHHHHHcCCEEEEEE-ecCCCcc
Confidence 5799999999999999999999999999999 8999986 6788999999999999999999996 6665522
Q ss_pred hhcchhhHHHHHcccCCe-EEEEc-CCCC---CcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCC
Q 001225 453 KINSMYSKKRLLKIHENV-KVLRH-PDHV---STGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLW 527 (1120)
Q Consensus 453 ~~~s~~~k~~L~~~~~nI-~V~r~-P~~~---~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~ 527 (1120)
.+...+. ..+ .++++ .+..+ |... .....+.++|+|++|||+.++|+||.|+
T Consensus 128 ~~~~~~~-~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~r~H~K~~viD~~i~~vGg~N~-------------------- 184 (438)
T COG1502 128 GLLKSLL-ALL--KRAGIEEVRLFNPASPRPLRFRRLNRRLHRKIVVIDGKVAFVGGANI-------------------- 184 (438)
T ss_pred cccHHHH-HHH--hcCCceEEEecCCcccccchhhhhhccccceEEEEcCCEEEecCccc--------------------
Confidence 2222121 122 35777 44433 4321 2234678999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccCCccc
Q 001225 528 PGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPHHHM 607 (1120)
Q Consensus 528 pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~ 607 (1120)
|++|.+.. ...++|+|+++++.||+|.+++.+|.++|+.......+.. .+
T Consensus 185 -~d~y~~~~-------------------~~~~~~~D~~~~~~g~~v~~l~~~f~~~w~~~~~~~~~~~------~~---- 234 (438)
T COG1502 185 -GDEYFHKD-------------------KGLGYWRDLHVRITGPAVADLARLFIQDWNLESGSSKPLL------AL---- 234 (438)
T ss_pred -chhhhccC-------------------cCcccceeeeEEEECHHHHHHHHHHHHHhhhccCcCcccc------cc----
Confidence 35565421 0234899999999999999999999999998743221100 00
Q ss_pred cccccccccccccccCcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCcccccccccCCCc
Q 001225 608 VLPHYMGRSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDDKSNGLNTNHNILDRTSGFYGS 687 (1120)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1120)
.+...+.
T Consensus 235 ----------------------------------------~~~~~~~--------------------------------- 241 (438)
T COG1502 235 ----------------------------------------VRPPLQS--------------------------------- 241 (438)
T ss_pred ----------------------------------------ccccccc---------------------------------
Confidence 0000000
Q ss_pred ccCCCCcccccccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhccccccccccccCCCCCCCcceEEEe
Q 001225 688 CTIPSNEYKTEALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSSKCGQVGPRLACRCQII 767 (1120)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQil 767 (1120)
. ........+.+|++
T Consensus 242 ---------------------------------------~--------------------------~~~~~~~~~~~~~~ 256 (438)
T COG1502 242 ---------------------------------------L--------------------------SLLPVGRGSTVQVL 256 (438)
T ss_pred ---------------------------------------c--------------------------cccccccCcceEEE
Confidence 0 00000112337899
Q ss_pred ecCcccCCCCCCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCC
Q 001225 768 RSVSQWSAGTSQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLI 847 (1120)
Q Consensus 768 RS~~~WS~G~~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~ 847 (1120)
.+.|.+..+.. ...+...|+.+|.+|+++|||++|||+++. .+.+||..+ +.+||+|.|++|..
T Consensus 257 ~~~P~~~~~~~--~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~--------~~~~al~~a------~~~Gv~V~ii~~~~ 320 (438)
T COG1502 257 SSGPDKGLGSE--LIELNRLLLKAINSARESILIATPYFVPDR--------ELLAALKAA------ARRGVDVRIIIPSL 320 (438)
T ss_pred ecCCccccchh--hhhHHHHHHHHHHhhceEEEEEcCCcCCCH--------HHHHHHHHH------HhcCCEEEEEeCCC
Confidence 98776543432 112569999999999999999999999972 566776654 45799999999943
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEE
Q 001225 848 PGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMII 927 (1120)
Q Consensus 848 P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIV 927 (1120)
- ..+ ..+++|.+ ...+..|.+ .|++++.| .+| .++|+|+|||
T Consensus 321 ~-----~~d------~~~~~~~~-------~~~~~~l~~-~gv~i~~~-------------~~g------~~lH~K~~ii 362 (438)
T COG1502 321 G-----AND------SAIVHAAY-------RAYLKELLE-AGVKVYEY-------------PGG------AFLHSKVMII 362 (438)
T ss_pred C-----CCC------hHHHHHHH-------HHHHHHHHH-hCCEEEEe-------------cCC------CcceeeEEEE
Confidence 0 111 22333333 346677887 78887554 122 4999999999
Q ss_pred eccEEEEcccccccCCCCCCCCceeeEEEEccc
Q 001225 928 DDRAALIGSSNINDRSLLGSRDSEIDVVIEDKE 960 (1120)
Q Consensus 928 DD~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~ 960 (1120)
||++++|||+|+|.||+. .|+|++++|+|++
T Consensus 363 D~~~~~vGS~N~~~rS~~--lN~E~~~~i~d~~ 393 (438)
T COG1502 363 DDRTVLVGSANLDPRSLR--LNFEVGLVIEDPE 393 (438)
T ss_pred cCCEEEEeCCcCCHhHHH--HhhhheeEEeCHH
Confidence 999999999999999995 9999999999985
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=1e-33 Score=332.09 Aligned_cols=356 Identities=18% Similarity=0.158 Sum_probs=225.3
Q ss_pred CCceEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHh--hCCcEEEEEEcccc--
Q 001225 373 DGSQAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKA--KEGIQVYILLYKEV-- 448 (1120)
Q Consensus 373 ~gn~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA--~rGVkVrILvyd~~-- 448 (1120)
.+|.+++|.+|.++|.+|+++|++||++|+| +.|++.+ |..+..|.++|.+|| ++||+|+||+ |..
T Consensus 23 ~~~~v~~l~~~~~f~~~Ll~~I~~Ak~~I~l-------~~y~~~~--D~~g~~il~AL~~a~~~~~gv~VrvLv-D~~Ra 92 (451)
T PRK09428 23 SPDDVETLYSPADFRETLLEKIASAKKRIYI-------VALYLED--DEAGREILDALYQAKQQNPELDIKVLV-DWHRA 92 (451)
T ss_pred CcccEEEEcCHHHHHHHHHHHHHhcCCeEEE-------EEEEecC--CchHHHHHHHHHHHHhcCCCcEEEEEE-Ecccc
Confidence 4789999999999999999999999999999 7888886 788999999999885 4899999997 542
Q ss_pred -----hhhh-hhcchhhHHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCC
Q 001225 449 -----SIAL-KINSMYSKKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDC 522 (1120)
Q Consensus 449 -----~~al-~~~s~~~k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~ 522 (1120)
|... ..+..+. ..|...++|++|..|.........+.++|+|++|||++|+|+| .||.
T Consensus 93 ~Rg~iG~~~~~~~~~~~-~~l~~~~~gv~v~~f~~p~~~~e~~gr~HrKi~IiD~~v~ysG-aNi~-------------- 156 (451)
T PRK09428 93 QRGLIGAAASNTNADWY-CEMAQEYPGVDIPVYGVPVNTREALGVLHLKGFIIDDTVLYSG-ASLN-------------- 156 (451)
T ss_pred cccccccCCCCcCHHHH-HHHHHhCCCceEEEcCCccccchhhhhceeeEEEECCCEEEec-cccc--------------
Confidence 2210 1222222 3455556788887762212223456789999999999999997 7994
Q ss_pred CCCCCCCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhcCCCCCCCCCCccc
Q 001225 523 PPSLWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLI 602 (1120)
Q Consensus 523 ~~~~~pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~ 602 (1120)
++|... . ++ ...|..++|+||++.++...|+++|..+...-.. +..
T Consensus 157 -------d~Yl~~-------------------~-~~-~r~Dry~~i~g~~la~~~~~fi~~~~~~~~~v~~------l~~ 202 (451)
T PRK09428 157 -------NVYLHQ-------------------H-DK-YRYDRYHLIRNAELADSMVNFIQQNLLNSPAVNR------LDQ 202 (451)
T ss_pred -------HHHhcC-------------------C-cc-cCcceEEEEeCchHHHHHHHHHHHHhhccCcccc------ccc
Confidence 455531 0 11 1127788899999999999999999765421000 000
Q ss_pred CCccccccccccccccccccCcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCcccccccc
Q 001225 603 PHHHMVLPHYMGRSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDDKSNGLNTNHNILDRTS 682 (1120)
Q Consensus 603 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1120)
+. .|. ...
T Consensus 203 ~~-------------------------------------------~~~----~~~------------------------- 210 (451)
T PRK09428 203 PN-------------------------------------------RPK----TKE------------------------- 210 (451)
T ss_pred cc-------------------------------------------ccc----chh-------------------------
Confidence 00 000 000
Q ss_pred cCCCcccCCCCcccccccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhccccccccccccCCCCCCCcc
Q 001225 683 GFYGSCTIPSNEYKTEALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSSKCGQVGPRLAC 762 (1120)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1120)
+ + ..++.+...... ..+. . ....+..
T Consensus 211 -------~-----~----------------------------~~~~~~~~~l~~-------~~~~-----~--~~~~~~~ 236 (451)
T PRK09428 211 -------I-----K----------------------------NDIRQFRQRLRD-------AAYQ-----F--QGQANND 236 (451)
T ss_pred -------h-----H----------------------------HHHHHHHHHHhh-------hccC-----c--ccccCCC
Confidence 0 0 000000000000 0000 0 0000112
Q ss_pred eEEEeecCcccCCCCCCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEE
Q 001225 763 RCQIIRSVSQWSAGTSQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIV 842 (1120)
Q Consensus 763 ~vQilRS~~~WS~G~~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~I 842 (1120)
.+|+...++ .|+. ..+..+++.+|.+|++.|+|.||||+++. .+.+||..+ .++|++|.|
T Consensus 237 ~~~v~p~~g---~g~~---~~l~~~~~~li~~A~~~i~I~TPYF~p~~--------~l~~~L~~a------~~rGv~V~I 296 (451)
T PRK09428 237 ELSVTPLVG---LGKK---NLLNKTIFHLMASAEQKLTICTPYFNLPA--------ILVRNIIRL------LRRGKKVEI 296 (451)
T ss_pred CeEEeeeec---cCCc---hHHHHHHHHHHhccCcEEEEEeCCcCCCH--------HHHHHHHHH------HhcCCcEEE
Confidence 345554332 2432 67999999999999999999999999972 466666543 346999999
Q ss_pred EecCCC--CCCCCCCCCchhHHH-HHHHHHHHHHHHhHHHHHHHHHhhhC---CCccceeeEeeeccccccCCCCCcccc
Q 001225 843 VLPLIP--GFQGGIDDGGAATVR-AIIHWQYRTISREKTSILHKLSMLLG---PKTRDYISFYGLRSYGRLCDGGPVATS 916 (1120)
Q Consensus 843 VlP~~P--~f~g~~~d~~~~~~r-~im~~qy~TI~rG~~si~~~L~~~~G---~~~~~Yi~f~~Lr~~~~~~~~g~~vte 916 (1120)
|+|... +|-+. ++...+. +...+-|..+.|.-...+..|.+ .| +.++.| .++
T Consensus 297 i~~~~~andfy~~---~d~~~~~~~~~py~ye~~lr~f~~~~~~li~-~G~l~v~i~~~-------------~~~----- 354 (451)
T PRK09428 297 IVGDKTANDFYIP---PDEPFKIIGALPYLYEINLRRFAKRLQYYID-NGQLNVRLWKD-------------GDN----- 354 (451)
T ss_pred EcCCcccccCcCC---CccHHHHhhhhHHHHHHhhhhhHHHhhhhhh-cCcceEEEEec-------------CCC-----
Confidence 999752 22110 1111111 22233444433322222334444 34 333322 233
Q ss_pred ceeeeeeEEEEeccEEEEcccccccCCCCCCCCceeeEEEEccc
Q 001225 917 QVYVHSKVMIIDDRAALIGSSNINDRSLLGSRDSEIDVVIEDKE 960 (1120)
Q Consensus 917 ~iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~ 960 (1120)
.+|+|.|+|||++++|||+|+|.||+. +|.|++++|.|++
T Consensus 355 --~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~ 394 (451)
T PRK09428 355 --SYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPK 394 (451)
T ss_pred --cceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECCh
Confidence 899999999999999999999999995 9999999999986
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=2.4e-32 Score=319.41 Aligned_cols=329 Identities=15% Similarity=0.153 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCC---CCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhcchhhH
Q 001225 384 QAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFE---NHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKINSMYSK 460 (1120)
Q Consensus 384 ~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~---~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~s~~~k 460 (1120)
...|+++.++|.+||++|+|+ .|.+.|.. ...+.+|.++|.+||+|||+||||+ |..+ ....+.
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~-------s~yf~~~d~~~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~----~~~~~~- 91 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDIS-------SFYWSLSDEVGTNFGTMILNEIIQLPKRGVRVRIAV-NKSN----KPLKDV- 91 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEE-------eEEEecCccccchhHHHHHHHHHHHHHCCCEEEEEE-CCCC----CchhhH-
Confidence 467999999999999999994 55555311 1347899999999999999999986 5432 122222
Q ss_pred HHHHcccCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 001225 461 KRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDYYNPRESEP 540 (1120)
Q Consensus 461 ~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~ 540 (1120)
..|.+ +||+|..+.... ....++|+|++|||+++||+||+|+.. |+ ..
T Consensus 92 ~~L~~--aGv~v~~~~~~~---~~~~~~HrK~~VIDg~~~~iGS~Nid~-rs--------------------l~------ 139 (424)
T PHA02820 92 ELLQM--AGVEVRYIDITN---ILGGVLHTKFWISDNTHIYLGSANMDW-RS--------------------LT------ 139 (424)
T ss_pred HHHHh--CCCEEEEEecCC---CCcccceeeEEEECCCEEEEeCCcCCh-hh--------------------hh------
Confidence 34443 789987764211 134689999999999999999999941 22 11
Q ss_pred CCccchhhhhhhcCCCCCCCeEeeeeEE--eChHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccCCcccccccccccccc
Q 001225 541 NSWEDTMKDELEREKYPRMPWHDVHCAL--WGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPHHHMVLPHYMGRSRE 618 (1120)
Q Consensus 541 ~~~~~~~~~~~dr~~~pr~pWhDv~~~v--~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~~~~~~~~~~~~ 618 (1120)
..+|+++.+ +||+|.+|++.|.++|++.+.. .+.. .+
T Consensus 140 -------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~-~~~~------~~--------------- 178 (424)
T PHA02820 140 -------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNN-LPYN------WK--------------- 178 (424)
T ss_pred -------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccC-CCCc------cc---------------
Confidence 124677777 6999999999999999987421 1000 00
Q ss_pred ccccCcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCcccccccccCCCcccCCCCccccc
Q 001225 619 IGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDDKSNGLNTNHNILDRTSGFYGSCTIPSNEYKTE 698 (1120)
Q Consensus 619 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1120)
...|...+.. .|
T Consensus 179 ---------------------------~~~~~~~~~~------------------------------~p----------- 190 (424)
T PHA02820 179 ---------------------------NFYPLYYNTD------------------------------HP----------- 190 (424)
T ss_pred ---------------------------cccccccccC------------------------------CC-----------
Confidence 0000000000 00
Q ss_pred ccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhccccccccccccCCCCCCCcceEEEeecCcccCCCCC
Q 001225 699 ALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSSKCGQVGPRLACRCQIIRSVSQWSAGTS 778 (1120)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~WS~G~~ 778 (1120)
. .....+....|++-|.+.-..+..
T Consensus 191 -------~------------------------------------------------~~~~~~~~~~~~~sssP~~~~~~~ 215 (424)
T PHA02820 191 -------L------------------------------------------------SLNVSGVPHSVFIASAPQQLCTME 215 (424)
T ss_pred -------c------------------------------------------------ccccCCccceEEEeCCChhhcCCC
Confidence 0 000001112345555443211211
Q ss_pred CchhHHHHHHHHHHHhccCeEEEEeeeeccCC---CCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCC
Q 001225 779 QTEGSIHSAYCSLIESAEHFIYIENQFFISGL---SGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGID 855 (1120)
Q Consensus 779 ~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~---~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~ 855 (1120)
-.....+|+.+|.+|+++|||+++||+|.. .....-+..|.+||.++. ..+||+|+|++|.+++.
T Consensus 216 --r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~~AA-----~~RGV~VriLvp~~~d~----- 283 (424)
T PHA02820 216 --RTNDLTALLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWPYIEDELRRAA-----IDRKVSVKLLISCWQRS----- 283 (424)
T ss_pred --CCchHHHHHHHHHHHhhEEEEEEccccceeeccCCcccchHHHHHHHHHHH-----HhCCCEEEEEEeccCCC-----
Confidence 124689999999999999999999999972 121122235777765421 35799999999987651
Q ss_pred CCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEeccEEEEc
Q 001225 856 DGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDDRAALIG 935 (1120)
Q Consensus 856 d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIG 935 (1120)
..+. |.+ ...++.|.+ .|+++ ||++|....+....+ ..-++|||+||||| ++.||
T Consensus 284 ----~~~~----~a~-------~~~l~~L~~-~gv~I--~Vk~y~~p~~~~~~~------~~~f~HaK~~vvD~-~a~IG 338 (424)
T PHA02820 284 ----SFIM----RNF-------LRSIAMLKS-KNINI--EVKLFIVPDADPPIP------YSRVNHAKYMVTDK-TAYIG 338 (424)
T ss_pred ----CccH----HHH-------HHHHHHHhc-cCceE--EEEEEEcCcccccCC------cceeeeeeEEEEcc-cEEEE
Confidence 1111 111 124566666 67765 666775432221111 11299999999997 59999
Q ss_pred ccccccCCCCCCCCceeeEEEEccc
Q 001225 936 SSNINDRSLLGSRDSEIDVVIEDKE 960 (1120)
Q Consensus 936 SANiN~RSm~G~~DsEi~v~i~D~~ 960 (1120)
|||||.||+. .+.|++++++|++
T Consensus 339 TsN~D~rsf~--~n~ev~~~i~~~~ 361 (424)
T PHA02820 339 TSNWTGNYFT--DTCGVSINITPDD 361 (424)
T ss_pred CCcCCHHHHh--ccCcEEEEEecCC
Confidence 9999999995 9999999999874
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=4.3e-32 Score=312.98 Aligned_cols=313 Identities=19% Similarity=0.180 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHhhceEEEEeeecCCceEEE--EcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhcchhhHHH
Q 001225 385 AAFEAIASAIKNAKSQILITGWWLCPELYL--IRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKINSMYSKKR 462 (1120)
Q Consensus 385 ~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL--~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~s~~~k~~ 462 (1120)
..|+++.++|++||++|+| ++|+ +++ +..+.+|.++|.+||+|||+||||+ |..+. ..+ .+.
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i-------~~yi~~~~~--d~~g~~i~~aL~~aa~rGV~Vril~-D~~~~-----~~~-~~~ 94 (369)
T PHA03003 31 STYECFDEIISQAKKYIYI-------ASFCCNLRS--TPEGRLILDKLKEAAESGVKVTILV-DEQSG-----DKD-EEE 94 (369)
T ss_pred CHHHHHHHHHHhhhhEEEE-------EEEEecccC--CchHHHHHHHHHHhccCCCeEEEEe-cCCCC-----Ccc-HHH
Confidence 6899999999999999999 8998 554 7889999999999999999999985 65431 222 245
Q ss_pred HHcccCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 001225 463 LLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDYYNPRESEPNS 542 (1120)
Q Consensus 463 L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~~~ 542 (1120)
|.+ .||+|..+...... ..+..|.|++||||++||+||+|+. ++|.+..
T Consensus 95 L~~--~Gv~v~~~~~~~~~--~~~~~~~k~~IiDg~~~y~Gg~Ni~---------------------~~~~~~~------ 143 (369)
T PHA03003 95 LQS--SNINYIKVDIGKLN--NVGVLLGSFWVSDDRRCYIGNASLT---------------------GGSISTI------ 143 (369)
T ss_pred HHH--cCCEEEEEeccccC--CCCceeeeEEEEcCcEEEEecCccC---------------------CcccCcc------
Confidence 554 57887655321110 0124588999999999999999995 3444320
Q ss_pred ccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccCCcccccccccccccccccc
Q 001225 543 WEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRSKAPNEQNIPLLIPHHHMVLPHYMGRSREIGID 622 (1120)
Q Consensus 543 ~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~ 622 (1120)
...+.|+|. ||+|.+|++.|.+.|+.++++..... .+..
T Consensus 144 -------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~------~~~~----------------- 182 (369)
T PHA03003 144 -------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNR------LCCA----------------- 182 (369)
T ss_pred -------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcccc------cccc-----------------
Confidence 123479994 99999999999999987743211000 0000
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCcccccccccCCCcccCCCCcccccccCC
Q 001225 623 NKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDDKSNGLNTNHNILDRTSGFYGSCTIPSNEYKTEALAP 702 (1120)
Q Consensus 623 ~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1120)
...|...+ . .
T Consensus 183 -----------------------~~~~~~~~--~---------------------------------~------------ 192 (369)
T PHA03003 183 -----------------------CCLPVSTK--Y---------------------------------H------------ 192 (369)
T ss_pred -----------------------cCCccccc--c---------------------------------c------------
Confidence 00000000 0 0
Q ss_pred CccccccccCcchhhhhhhcccccccccccccchhhhhhccccccccccccCCCCCCCcceEEEeecCcccCCCCCCchh
Q 001225 703 NSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSSKCGQVGPRLACRCQIIRSVSQWSAGTSQTEG 782 (1120)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~WS~G~~~~E~ 782 (1120)
. + .+.+ .+++-|.|.-..+. ...
T Consensus 193 ------------------------~--------------------------~--~~~~---~~~~~s~P~~~~~~--~~~ 215 (369)
T PHA03003 193 ------------------------I--------------------------N--NPIG---GVFFSDSPEHLLGY--SRT 215 (369)
T ss_pred ------------------------c--------------------------c--CCCc---ceEEecCChHHcCC--CCC
Confidence 0 0 0000 12343322100010 123
Q ss_pred HHHHHHHHHHHhccCeEEEEeeeeccCCCCCh--hHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchh
Q 001225 783 SIHSAYCSLIESAEHFIYIENQFFISGLSGDE--TIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAA 860 (1120)
Q Consensus 783 sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~--~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~ 860 (1120)
.++.+|+++|.+|+++|+|+++||+|....++ .....|.+||.. |+ +++||+|+|++|.... .+.
T Consensus 216 ~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~d~~~~~~~~i~~AL~~----AA-a~RGV~VRILv~~~~~-----~~~--- 282 (369)
T PHA03003 216 LDADVVLHKIKSAKKSIDLELLSLVPVIREDDKTTYWPDIYNALIR----AA-INRGVKVRLLVGSWKK-----NDV--- 282 (369)
T ss_pred cCHHHHHHHHHHHhhEEEEEEeccccEEeeCCCCccHHHHHHHHHH----HH-HcCCCEEEEEEecCCc-----CCc---
Confidence 58999999999999999999999987532221 112345555544 31 3679999999986421 110
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEeccEEEEcccccc
Q 001225 861 TVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDDRAALIGSSNIN 940 (1120)
Q Consensus 861 ~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN 940 (1120)
. ..+++..|.+ +|....-.+++|.. ..|+|+|||||++++|||+||+
T Consensus 283 ~---------------~~~~~~~L~~-~G~~~~i~vri~~~-----------------~~H~K~~VVD~~~a~iGS~N~d 329 (369)
T PHA03003 283 Y---------------SMASVKSLQA-LCVGNDLSVKVFRI-----------------PNNTKLLIVDDEFAHITSANFD 329 (369)
T ss_pred h---------------hhhHHHHHHH-cCCCCCceEeeecC-----------------CCCceEEEEcCCEEEEeccccC
Confidence 0 1135567877 67554333333321 1699999999999999999999
Q ss_pred cCCCCCCCCceeeEEEEccc
Q 001225 941 DRSLLGSRDSEIDVVIEDKE 960 (1120)
Q Consensus 941 ~RSm~G~~DsEi~v~i~D~~ 960 (1120)
+||+. .+.|+++.+.|++
T Consensus 330 ~~s~~--~~~e~~~~~~~~~ 347 (369)
T PHA03003 330 GTHYL--HHAFVSFNTIDKE 347 (369)
T ss_pred chhhc--cCCCeEEecCChh
Confidence 99995 7899988776654
No 13
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.95 E-value=9.2e-28 Score=231.62 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=106.8
Q ss_pred CCC-ceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccc
Q 001225 54 ELP-KATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVD 132 (1120)
Q Consensus 54 ~~p-~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~ 132 (1120)
++| +|+|++|||+++++...++++|||||+||+|+|+||||||||+.||++|.+ +|++|+.+|+++
T Consensus 1 g~pi~~~V~~~er~~s~s~~~~~~lYtIeltHG~F~W~IkRryKhF~~LHr~L~~-------------~k~~~~~~P~~~ 67 (130)
T cd07297 1 GVPVTAKVENTERYTTGSKVHVCTLYTVRLTHGEFTWTVKKKFKHFQELHRDLYR-------------HKVMLSFLPLGR 67 (130)
T ss_pred CCceEEEEEEEEEeecccccccceeEEEEEecCceEEEEEehhhhHHHHHHHHHH-------------HHHhhhcCCchh
Confidence 467 999999999999988888899999999999999999999999999997774 788888778888
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccccHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 133 QVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
++..++.. .....+.||+ ||+..+.+ ...+++|+ ++||+|||.||++++|+|++++.+||||
T Consensus 68 ~~~~r~~~-------------~~~~~~~mP~---LP~~~~~~-~~~~~sr~-kqLE~YLn~LL~~~~YRn~~atleFLeV 129 (130)
T cd07297 68 FAIQHRQQ-------------LEGLTEEMPS---LPGTDREA-SRRTASKP-KYLENYLNNLLENSFYRNYHAMMEFLAV 129 (130)
T ss_pred hhhhhccc-------------cccccCcCCC---CCCCCchh-hhhhhhHH-HHHHHHHHHHhcchhhcCChhheeeeec
Confidence 75433221 1234577888 88754443 23566666 6999999999999999999999999999
Q ss_pred c
Q 001225 213 S 213 (1120)
Q Consensus 213 S 213 (1120)
|
T Consensus 130 S 130 (130)
T cd07297 130 S 130 (130)
T ss_pred C
Confidence 8
No 14
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.89 E-value=4e-23 Score=204.00 Aligned_cols=130 Identities=25% Similarity=0.333 Sum_probs=99.7
Q ss_pred CCC-ceEEeeeeccCCCC--CCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-cc
Q 001225 54 ELP-KATIVAVSRPDSSD--ISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQS-IG 129 (1120)
Q Consensus 54 ~~p-~~~I~~ver~~s~~--~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~-~~ 129 (1120)
++| +|+|++|||++++. ..+++++|+|+|+||.|+|+|+|||+||..||.+|.. ++++++. ||
T Consensus 1 g~~i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~g~~~w~V~rRy~~F~~Lh~~L~~-------------~~~~~~~plP 67 (135)
T cd07296 1 GCPIKARVLEVERFTSTSDVKKPSLNVYTIELTHGEFTWQVKRKFKHFQELHRELLR-------------YKAFIRIPIP 67 (135)
T ss_pred CCceEEEEEEEEEeeccccccccceEEEEEEEEeCCEEEEEEeehHHHHHHHHHHHh-------------cCCCCCCCCC
Confidence 467 99999999999987 8889999999999999999999999999999998874 4444422 33
Q ss_pred cccccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc-cHHHHHHHHHHHHHHHHHhhcccccchhccc
Q 001225 130 IVDQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ-TVAERAKVAMQGYLNHFMGNIDIVNSREVCK 208 (1120)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~-~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~ 208 (1120)
...|+..++.. ...+++.||+ ||.......++ .+++|| ++||+||++||++++++|++++++
T Consensus 68 ~k~~~~~r~~~-------------~~~~~~~~p~---lp~~~~~~v~e~~~~sRr-~~LE~YL~~LL~~~~~Rn~~a~~e 130 (135)
T cd07296 68 TRSHTVRRQTI-------------KRGEPRHMPS---LPRGAEEEAREEQFSSRR-KQLEDYLSKLLKMPMYRNYHATME 130 (135)
T ss_pred cccchhhcccc-------------cccccccccc---CCCCCCccccccchHHHH-HHHHHHHHHHhcChhhcCCHHHHh
Confidence 44443222211 1234567777 66544333344 566666 699999999999999999999999
Q ss_pred cceec
Q 001225 209 FLEVS 213 (1120)
Q Consensus 209 FLEvS 213 (1120)
|||||
T Consensus 131 FLeVs 135 (135)
T cd07296 131 FIDVS 135 (135)
T ss_pred heecC
Confidence 99997
No 15
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.87 E-value=6e-22 Score=198.86 Aligned_cols=136 Identities=29% Similarity=0.365 Sum_probs=104.3
Q ss_pred CCceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHH-HHHHHHHHHhhhhhHHHhhhcccccc
Q 001225 55 LPKATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKK-RAIIDELHEKQGQVKEWLQSIGIVDQ 133 (1120)
Q Consensus 55 ~p~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~-~~~~~e~~~~~~~~~~~~~~~~~~~~ 133 (1120)
+++|+|+++||++++....++++|+||++||+|+|+|+|||+||..||.+|+. ++.++..+..+...+.|++.
T Consensus 3 ~i~a~I~~~er~~~~~~~~~~~~Y~Iev~~g~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~------ 76 (140)
T cd06895 3 PIKARITDVERSGTTRHLLNPNLYTIELQHGQFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSL------ 76 (140)
T ss_pred CcEEEEeEEeccCCCCCCCceEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhcc------
Confidence 34999999999998767778899999999999999999999999999999997 46555444444444445421
Q ss_pred cccccCCCCCCCCCCCCC-CCccccccCCCCcccccccccccccccHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 134 VAVVQDDDEPDDGAVPMH-PSESVRNRYVPSMAALSILRPVLGKQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~r~~Ps~~~lp~~r~~l~~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
.+++ +..+.+.+.||++++.|.++. +..+.+.|+++||+||+.||+++.+++++++++||||
T Consensus 77 --------------~~~~~~~~~~~~~~lP~lP~~~~~~~---~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeV 139 (140)
T cd06895 77 --------------KRSRKPEREKKNRRLPSLPALPDILV---SEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEV 139 (140)
T ss_pred --------------ccccccccccccccCCCCCCcccccc---CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhcc
Confidence 1111 112455678999666664422 3356666678999999999999999999999999999
Q ss_pred c
Q 001225 213 S 213 (1120)
Q Consensus 213 S 213 (1120)
|
T Consensus 140 S 140 (140)
T cd06895 140 S 140 (140)
T ss_pred C
Confidence 8
No 16
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.85 E-value=3.5e-21 Score=189.47 Aligned_cols=119 Identities=35% Similarity=0.713 Sum_probs=101.1
Q ss_pred eeeEEEEEeccCCCCCCCCCccc--ccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCee
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCT--GCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~--~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
|||||+||++++++++ ..|| +.||.+|..+|+|||||||+|||+|+++|.+.++++|||||..|.+..+....+.
T Consensus 1 keG~i~kr~g~~~~~~---~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~ 77 (121)
T cd01254 1 KEGYIMKRSGGKRSGS---DDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDIS 77 (121)
T ss_pred CCceEEeCCCCCcCCc---ccccccccCCcccccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCccccc
Confidence 7999999998776542 3342 3455667799999999999999999999999999999999999987765555556
Q ss_pred ecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhh
Q 001225 304 LASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDA 347 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~ 347 (1120)
.+..+++.++.++||.|.|++|++.|+|.|++++.+|+++|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 78 LAVELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred ccccccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 66666777889999999999999999999999999999999864
No 17
>PRK05443 polyphosphate kinase; Provisional
Probab=99.73 E-value=2.8e-16 Score=192.84 Aligned_cols=134 Identities=22% Similarity=0.203 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhhce-----EEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhcchh
Q 001225 384 QAAFEAIASAIKNAKS-----QILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKINSMY 458 (1120)
Q Consensus 384 ~~yf~al~~aI~~Ak~-----~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~s~~ 458 (1120)
-+-|..+.+.|++|.+ +|.+ .+|.... ..++.++|..||++||+|+||+--.....-..|..|
T Consensus 347 Y~SF~~~~~~i~~Aa~DP~V~~Ik~-------tlYr~~~-----~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~ 414 (691)
T PRK05443 347 YESFDPVVEFLRQAAADPDVLAIKQ-------TLYRTSK-----DSPIVDALIEAAENGKQVTVLVELKARFDEEANIRW 414 (691)
T ss_pred ccCchHHHHHHHHhccCCCeeEEEE-------EEEEecC-----CHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHH
Confidence 3457888999999998 8999 4676542 389999999999999999999832110000112223
Q ss_pred hHHHHHcccCCeEEEE-cCCCCCcccccccCcceEEEEeCC-------eEEEccccCCCCCcCCCCCcCCCCCCCCCCCC
Q 001225 459 SKKRLLKIHENVKVLR-HPDHVSTGVYLWSHHEKLVIVDYR-------ISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGK 530 (1120)
Q Consensus 459 ~k~~L~~~~~nI~V~r-~P~~~~~~~~~~rhH~KivVID~~-------vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~ 530 (1120)
. +.|.. +|++|.. +| .+..|.|+++||++ +|++|+.|+..
T Consensus 415 ~-~~L~~--aGv~V~y~~~--------~~k~HaK~~lid~~e~~~~~~~~~iGTgN~n~--------------------- 462 (691)
T PRK05443 415 A-RRLEE--AGVHVVYGVV--------GLKTHAKLALVVRREGGGLRRYVHLGTGNYNP--------------------- 462 (691)
T ss_pred H-HHHHH--cCCEEEEccC--------CccceeEEEEEEeecCCceeEEEEEcCCCCCc---------------------
Confidence 2 44443 7999843 33 24689999999999 99999999831
Q ss_pred CCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEe-ChHHHHHHHHHHHHHHh
Q 001225 531 DYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALW-GPPCRDIARHFVQRWNH 586 (1120)
Q Consensus 531 dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~-Gpaa~dl~~~F~qrWn~ 586 (1120)
.+ -..|.|+++.+. +..+.|+...|...|.+
T Consensus 463 ------------------------~s-~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~ 494 (691)
T PRK05443 463 ------------------------KT-ARLYTDLSLLTADPEIGEDVTRLFNYLTGY 494 (691)
T ss_pred ------------------------ch-hhhccceeEEEeChHHHHHHHHHHHHHhCc
Confidence 00 126889999955 56899999999998754
No 18
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.71 E-value=3.9e-16 Score=190.58 Aligned_cols=132 Identities=24% Similarity=0.286 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhhce-----EEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhh--hhcc
Q 001225 384 QAAFEAIASAIKNAKS-----QILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIAL--KINS 456 (1120)
Q Consensus 384 ~~yf~al~~aI~~Ak~-----~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al--~~~s 456 (1120)
-+-|..+.+.|++|.+ +|.| .+|.+.. ..++.++|.+||++|++|+|+|- ....+ ..|-
T Consensus 338 Y~Sf~~v~~~i~~Aa~DP~V~~Ik~-------tlYr~~~-----~s~ii~aL~~Aa~~Gk~V~v~ve--LkArfde~~ni 403 (672)
T TIGR03705 338 YESFDPVVEFLRQAAEDPDVLAIKQ-------TLYRTSK-----DSPIIDALIEAAENGKEVTVVVE--LKARFDEEANI 403 (672)
T ss_pred ccCHHHHHHHHHHHhcCCCceEEEE-------EEEEecC-----CcHHHHHHHHHHHcCCEEEEEEE--ehhhccchhhH
Confidence 3457788999999998 8999 5887753 27999999999999999999983 11100 1233
Q ss_pred hhhHHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEeCC-------eEEEccccCCCCCcCCCCCcCCCCCCCCCCC
Q 001225 457 MYSKKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYR-------ISFIGGLDLCFGRYDTIEHKVGDCPPSLWPG 529 (1120)
Q Consensus 457 ~~~k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~-------vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG 529 (1120)
.+. +.|.. +|++|.. |...+..|.|+++||.+ .+++|.-|..
T Consensus 404 ~wa-~~le~--aG~~viy-------g~~~~k~H~K~~li~r~~~~~~~~y~~igTgN~n--------------------- 452 (672)
T TIGR03705 404 RWA-RRLEE--AGVHVVY-------GVVGLKTHAKLALVVRREGGELRRYVHLGTGNYH--------------------- 452 (672)
T ss_pred HHH-HHHHH--cCCEEEE-------cCCCeeeeeEEEEEEEeeCCceEEEEEecCCCCC---------------------
Confidence 343 35543 7999863 22346899999999975 4666655542
Q ss_pred CCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeE-EeChHHHHHHHHHHHHHH
Q 001225 530 KDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCA-LWGPPCRDIARHFVQRWN 585 (1120)
Q Consensus 530 ~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~-v~Gpaa~dl~~~F~qrWn 585 (1120)
+ ++. ..|.|+++. ..|..+.|+...|...|.
T Consensus 453 -----~-------------------~ta-~~y~D~~l~t~~~~i~~d~~~~F~~l~~ 484 (672)
T TIGR03705 453 -----P-------------------KTA-RLYTDLSLFTADPEIGRDVARVFNYLTG 484 (672)
T ss_pred -----C-------------------ccc-ccccceeEEEeChHHHHHHHHHHHHhhC
Confidence 1 111 369999998 778999999999998875
No 19
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.59 E-value=1.4e-14 Score=149.65 Aligned_cols=157 Identities=26% Similarity=0.373 Sum_probs=117.0
Q ss_pred CceEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhh
Q 001225 374 GSQAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALK 453 (1120)
Q Consensus 374 gn~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~ 453 (1120)
++..++..++.+++..+.++|.+|+++|+|+.|+++|.. ......|.+.|.+++++||+|+||+++.......
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~-------~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~ 82 (176)
T cd00138 10 NNLDKKRVGGRSDLDALLEAISNAKKSIYIASFYLSPLI-------TEYGPVILDALLAAARRGVKVRILVDEWSNTDLK 82 (176)
T ss_pred ccccccCcCcchHHHHHHHHHHhhheEEEEEEeEecccc-------cccchHHHHHHHHHHHCCCEEEEEEcccccCCch
Confidence 456688999999999999999999999999765555422 1335789999999999999999998765443211
Q ss_pred hcchhhHHHHHcc-cCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCC
Q 001225 454 INSMYSKKRLLKI-HENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDY 532 (1120)
Q Consensus 454 ~~s~~~k~~L~~~-~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY 532 (1120)
....+. ..|... .++|++..++.... ...++|.|++|||++++++||.|+....|
T Consensus 83 ~~~~~~-~~l~~~~~~~i~~~~~~~~~~---~~~~~H~K~~iiD~~~~~vGS~N~~~~~~-------------------- 138 (176)
T cd00138 83 ISSAYL-DSLRALLDIGVRVFLIRTDKT---YGGVLHTKLVIVDDETAYIGSANLDGRSL-------------------- 138 (176)
T ss_pred HHHHHH-HHHHHhhcCceEEEEEcCCcc---cccceeeeEEEEcCCEEEEECCcCChhhh--------------------
Confidence 112222 223221 35788876664211 34699999999999999999999963211
Q ss_pred CCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeCh--HHHHHHHHHHHHHHhh
Q 001225 533 YNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGP--PCRDIARHFVQRWNHA 587 (1120)
Q Consensus 533 ~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gp--aa~dl~~~F~qrWn~~ 587 (1120)
..++|+.+.+.|| +|.++.+.|.+.|+..
T Consensus 139 --------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 139 --------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred --------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 1467999999999 7999999999999864
No 20
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.54 E-value=6.6e-14 Score=164.77 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=104.4
Q ss_pred CcceEEEeecCcccCCCCC--CchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 001225 760 LACRCQIIRSVSQWSAGTS--QTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKY 837 (1120)
Q Consensus 760 ~~~~vQilRS~~~WS~G~~--~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~g 837 (1120)
.+|+||++-|+|. |.. ..-.|.+++|+++|.+|+++|+|+++||+++.......-.+|.+||.+ | +++|
T Consensus 4 ~~~~~~~vesiP~---~~~~~~~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~~~~~G~~i~~aL~~----a--A~rG 74 (424)
T PHA02820 4 DNTIAVITETIPI---GMQFDKVYLSTFNFWREILSNTTKTLDISSFYWSLSDEVGTNFGTMILNEIIQ----L--PKRG 74 (424)
T ss_pred cccEEEEEEecCC---CCCCCCCCCCHHHHHHHHHHhhCcEEEEEeEEEecCccccchhHHHHHHHHHH----H--HHCC
Confidence 4799999999986 322 123589999999999999999999999996421111122345555554 3 4579
Q ss_pred eEEEEEecCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccc
Q 001225 838 FRVIVVLPLIPGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQ 917 (1120)
Q Consensus 838 v~V~IVlP~~P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~ 917 (1120)
|+|+|+++.. + ... ..++.|.+ +|++++.|- ...+ .++
T Consensus 75 V~VRIL~d~~-~----~~~----------------------~~~~~L~~-aGv~v~~~~----~~~~----~~~------ 112 (424)
T PHA02820 75 VRVRIAVNKS-N----KPL----------------------KDVELLQM-AGVEVRYID----ITNI----LGG------ 112 (424)
T ss_pred CEEEEEECCC-C----Cch----------------------hhHHHHHh-CCCEEEEEe----cCCC----Ccc------
Confidence 9999999842 2 110 12356777 788765441 1111 123
Q ss_pred eeeeeeEEEEeccEEEEcccccccCCCCCCCCceeeEEEEcc
Q 001225 918 VYVHSKVMIIDDRAALIGSSNINDRSLLGSRDSEIDVVIEDK 959 (1120)
Q Consensus 918 iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~i~D~ 959 (1120)
..|+|+||||+++++|||+||++||+ ..+.|+++.+.+.
T Consensus 113 -~~HrK~~VIDg~~~~iGS~Nid~rsl--~~n~E~gv~i~~~ 151 (424)
T PHA02820 113 -VLHTKFWISDNTHIYLGSANMDWRSL--TQVKELGIAIFNN 151 (424)
T ss_pred -cceeeEEEECCCEEEEeCCcCChhhh--hhCCceEEEEecc
Confidence 79999999999999999999999999 4889999988763
No 21
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.52 E-value=1.4e-13 Score=142.10 Aligned_cols=151 Identities=26% Similarity=0.277 Sum_probs=105.8
Q ss_pred EEEeecCcccCCCCCCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEE
Q 001225 764 CQIIRSVSQWSAGTSQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVV 843 (1120)
Q Consensus 764 vQilRS~~~WS~G~~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IV 843 (1120)
.|+++|.+.|..+...++.++.++++++|.+|++.|+|+++||.+.. ......|.++|.++. ++|++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~---~~~~~~l~~~L~~a~------~rGv~V~il 72 (176)
T cd00138 2 VQLGESPSNNLDKKRVGGRSDLDALLEAISNAKKSIYIASFYLSPLI---TEYGPVILDALLAAA------RRGVKVRIL 72 (176)
T ss_pred ceeccCCCccccccCcCcchHHHHHHHHHHhhheEEEEEEeEecccc---cccchHHHHHHHHHH------HCCCEEEEE
Confidence 46788888887766667889999999999999999999999998631 001135666666542 359999999
Q ss_pred ecCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeee
Q 001225 844 LPLIPGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSK 923 (1120)
Q Consensus 844 lP~~P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSK 923 (1120)
+...+.... . . ...++..|.... ..-+.++.+..... ....+|+|
T Consensus 73 ~~~~~~~~~------~-~---------------~~~~~~~l~~~~----~~~i~~~~~~~~~~---------~~~~~H~K 117 (176)
T cd00138 73 VDEWSNTDL------K-I---------------SSAYLDSLRALL----DIGVRVFLIRTDKT---------YGGVLHTK 117 (176)
T ss_pred EcccccCCc------h-H---------------HHHHHHHHHHhh----cCceEEEEEcCCcc---------cccceeee
Confidence 987654110 0 0 112334454421 11233333322110 12389999
Q ss_pred EEEEeccEEEEcccccccCCCCCCCCceeeEEEEccc
Q 001225 924 VMIIDDRAALIGSSNINDRSLLGSRDSEIDVVIEDKE 960 (1120)
Q Consensus 924 lmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~ 960 (1120)
+||||++.+++||+|++.+|+. .|.|+++.+.+++
T Consensus 118 ~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 118 LVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred EEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 9999999999999999999995 8999999999986
No 22
>PRK13912 nuclease NucT; Provisional
Probab=99.31 E-value=4.5e-11 Score=125.40 Aligned_cols=143 Identities=22% Similarity=0.242 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhcchhhHH
Q 001225 382 DGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKINSMYSKK 461 (1120)
Q Consensus 382 DG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~s~~~k~ 461 (1120)
++.+.+..+.++|++|+++|+| .+|.+.. ..+.++|.+|++|||+|+||+ |+.... +.....-
T Consensus 30 ~~~~~~~~l~~~I~~Ak~sI~i-------~~Y~~~~------~~i~~aL~~Aa~RGV~VrIll-d~~~~~---~~~~~~~ 92 (177)
T PRK13912 30 EQKDALNKLVSLISNARSSIKI-------AIYSFTH------KDIAKALKSAAKRGVKISIIY-DYESNH---NNDQSTI 92 (177)
T ss_pred ChHHHHHHHHHHHHhcccEEEE-------EEEEEch------HHHHHHHHHHHHCCCEEEEEE-eCcccc---CcchhHH
Confidence 4567899999999999999999 6788763 579999999999999999996 443211 1111001
Q ss_pred HHHcccCCeEEEEc-CCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 001225 462 RLLKIHENVKVLRH-PDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDYYNPRESEP 540 (1120)
Q Consensus 462 ~L~~~~~nI~V~r~-P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~ 540 (1120)
......+|+++... +...........+|.|++|||++++++||.|+....+ .
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~H~K~~viD~~~~~iGS~N~t~~s~---------------------~------ 145 (177)
T PRK13912 93 GYLDKYPNIKVCLLKGLKAKNGKYYGIMHQKVAIIDDKIVVLGSANWSKNAF---------------------E------ 145 (177)
T ss_pred HHHHhCCCceEEEecCccccCcccccccceeEEEEcCCEEEEeCCCCChhHh---------------------c------
Confidence 11222467776554 2221112234568999999999999999999962111 0
Q ss_pred CCccchhhhhhhcCCCCCCCeEeeeeEEeChH-HHHHHHHHHHHHHhh
Q 001225 541 NSWEDTMKDELEREKYPRMPWHDVHCALWGPP-CRDIARHFVQRWNHA 587 (1120)
Q Consensus 541 ~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpa-a~dl~~~F~qrWn~~ 587 (1120)
--+++.+.+..|. +.++.+.|.+.|...
T Consensus 146 -------------------~N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 146 -------------------NNYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred -------------------cCCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 0125667777764 688999999999654
No 23
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.29 E-value=2.1e-11 Score=141.66 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhceEEEEeeecCCceEEEEcCC-CCCchHHHHHHHHHHh-hCCcEEEEEEcccchhhhhhcchhhHHHHH
Q 001225 387 FEAIASAIKNAKSQILITGWWLCPELYLIRPF-ENHPSSRLDALLEEKA-KEGIQVYILLYKEVSIALKINSMYSKKRLL 464 (1120)
Q Consensus 387 f~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~-~~~~~~rL~~lL~~kA-~rGVkVrILvyd~~~~al~~~s~~~k~~L~ 464 (1120)
..++.++|.+||++|+|...-|.| +++.. ....+..|.++|.+|| +|||+||||+ +..+..-.....+. +.|.
T Consensus 218 ~~~ll~~I~~Ak~~I~I~t~yf~P---~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~~~~~~~-~~L~ 292 (369)
T PHA03003 218 ADVVLHKIKSAKKSIDLELLSLVP---VIREDDKTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDVYSMASV-KSLQ 292 (369)
T ss_pred HHHHHHHHHHHhhEEEEEEecccc---EEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCchhhhHH-HHHH
Confidence 489999999999999995333333 12211 1123468999998885 9999999997 43221101112222 3454
Q ss_pred cc--cCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 001225 465 KI--HENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDYYNPRESEPNS 542 (1120)
Q Consensus 465 ~~--~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~~~ 542 (1120)
.. +.++.|..|. ..+|+|++|||+++||+||.|+....++ .
T Consensus 293 ~~G~~~~i~vri~~---------~~~H~K~~VVD~~~a~iGS~N~d~~s~~--------------------~-------- 335 (369)
T PHA03003 293 ALCVGNDLSVKVFR---------IPNNTKLLIVDDEFAHITSANFDGTHYL--------------------H-------- 335 (369)
T ss_pred HcCCCCCceEeeec---------CCCCceEEEEcCCEEEEeccccCchhhc--------------------c--------
Confidence 32 1234443222 1279999999999999999999521110 0
Q ss_pred ccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhh
Q 001225 543 WEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHA 587 (1120)
Q Consensus 543 ~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~ 587 (1120)
..|.++ ..+.|++|.+++..|.++|+..
T Consensus 336 ----------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 ----------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred ----------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 123332 2467999999999999999753
No 24
>PRK13912 nuclease NucT; Provisional
Probab=99.29 E-value=1.7e-11 Score=128.48 Aligned_cols=129 Identities=22% Similarity=0.294 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchhH
Q 001225 782 GSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAAT 861 (1120)
Q Consensus 782 ~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~~ 861 (1120)
..+...++++|.+|++.|+|+. |+++. ..|.+||.+ | +++||+|.|+++.... ... ..
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~--------~~i~~aL~~----A--a~RGV~VrIlld~~~~----~~~--~~- 89 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTH--------KDIAKALKS----A--AKRGVKISIIYDYESN----HNN--DQ- 89 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEch--------HHHHHHHHH----H--HHCCCEEEEEEeCccc----cCc--ch-
Confidence 3678999999999999999995 77764 256667655 3 3579999999986532 110 00
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEeccEEEEccccccc
Q 001225 862 VRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDDRAALIGSSNIND 941 (1120)
Q Consensus 862 ~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN~ 941 (1120)
.. +..|.+..+++... +-+++.. .+ ...-++|+|+||||++++++||+|++.
T Consensus 90 -~~----------------~~~l~~~~~~~~~~---~~~~~~~-----~~---~~~~~~H~K~~viD~~~~~iGS~N~t~ 141 (177)
T PRK13912 90 -ST----------------IGYLDKYPNIKVCL---LKGLKAK-----NG---KYYGIMHQKVAIIDDKIVVLGSANWSK 141 (177)
T ss_pred -hH----------------HHHHHhCCCceEEE---ecCcccc-----Cc---ccccccceeEEEEcCCEEEEeCCCCCh
Confidence 00 01122111111110 0011100 00 011278999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEccchh
Q 001225 942 RSLLGSRDSEIDVVIEDKEFL 962 (1120)
Q Consensus 942 RSm~G~~DsEi~v~i~D~~~v 962 (1120)
+|+. .|.|+.+++.|++.+
T Consensus 142 ~s~~--~N~E~~lii~d~~~~ 160 (177)
T PRK13912 142 NAFE--NNYEVLLITDDTETI 160 (177)
T ss_pred hHhc--cCCceEEEECCHHHH
Confidence 9994 899999999998754
No 25
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.26 E-value=2.9e-09 Score=121.69 Aligned_cols=115 Identities=18% Similarity=0.092 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhceEEEEe--eecCCceEEEEcCC-CCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhcchhhHH
Q 001225 385 AAFEAIASAIKNAKSQILIT--GWWLCPELYLIRPF-ENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKINSMYSKK 461 (1120)
Q Consensus 385 ~yf~al~~aI~~Ak~~I~I~--~WwlsPe~yL~rp~-~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~s~~~k~ 461 (1120)
..+++.++.|+.|+++++|+ +|-|.- -++.-++ ....+..+..+|.+++.+||+|+|..-.+.+.. .+... .
T Consensus 72 sT~eaW~~Ll~sA~~eldIas~ywsL~~-~d~~~~dsSt~~G~~vy~~L~~~~~~gIsiriA~~~p~~~~--~~~d~--~ 146 (456)
T KOG3603|consen 72 STKEAWLELLSTAQEELDIASFYWSLTG-KDTGVVDSSTQYGEQVYNTLLALAKSGVKIRIAQSYPSGGP--PNADL--Q 146 (456)
T ss_pred cHHHHHHHHhhccceEEEEEEEeecccc-ceeccCCCcchHHHHHHHHHHHhccCCeEEEEEeecCCCCC--CcccH--H
Confidence 34599999999999999996 555532 1222221 123578999999999999999999864433321 11111 2
Q ss_pred HHHcccCC-eEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCC
Q 001225 462 RLLKIHEN-VKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLC 508 (1120)
Q Consensus 462 ~L~~~~~n-I~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~ 508 (1120)
.|.. .| ++|..-+.+-..+ -.-.|-|..|||++--|+||.|+.
T Consensus 147 ~Le~--~Gaa~vr~id~~~l~g--~GvlHtKf~vvD~khfylGSaNfD 190 (456)
T KOG3603|consen 147 VLES--LGLAQVRSIDMNRLTG--GGVLHTKFWVVDIKHFYLGSANFD 190 (456)
T ss_pred HHHh--CCCceEEeeccccccc--CceEEEEEEEEecceEEEeccccc
Confidence 2332 33 5554333221111 235799999999999999999994
No 26
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.25 E-value=3.9e-11 Score=144.68 Aligned_cols=146 Identities=23% Similarity=0.329 Sum_probs=108.5
Q ss_pred CceEEEEecHH-----HHHHHHHHHHHhhceEEEEeeecCCceE-EEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEccc
Q 001225 374 GSQAQWFIDGQ-----AAFEAIASAIKNAKSQILITGWWLCPEL-YLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKE 447 (1120)
Q Consensus 374 gn~v~~lvDG~-----~yf~al~~aI~~Ak~~I~I~~WwlsPe~-yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~ 447 (1120)
...++++.+|. +.+.++.++|.+||++|+|+ . |++ | ...+.++|+.||+|||+|+||+...
T Consensus 328 ~~~~q~~~sgp~~~~~~i~~~~l~~I~~A~~~I~I~-------tpYf~-p-----d~~l~~aL~~Aa~rGV~Vrii~p~~ 394 (509)
T PRK12452 328 EGAVQIVASGPSSDDKSIRNTLLAVMGSAKKSIWIA-------TPYFI-P-----DQETLTLLRLSAISGIDVRILYPGK 394 (509)
T ss_pred CeEEEEEeCCCCchhHHHHHHHHHHHHHhhhEEEEE-------CCccC-C-----CHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 35789999987 78999999999999999994 4 443 3 2589999999999999999997432
Q ss_pred chhhhh--hcchhhHHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCC
Q 001225 448 VSIALK--INSMYSKKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPS 525 (1120)
Q Consensus 448 ~~~al~--~~s~~~k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~ 525 (1120)
....+. ....|. ..|. ..||+|..|... ..|.|++|||+++|++||.|+...
T Consensus 395 ~D~~~~~~a~~~~~-~~L~--~aGv~I~~y~~~--------~lHaK~~ivD~~~a~vGS~Nld~R--------------- 448 (509)
T PRK12452 395 SDSIISDQASQSYF-TPLL--KAGASIYSYKDG--------FMHAKIVLVDDKIATIGTANMDVR--------------- 448 (509)
T ss_pred CChHHHHHHHHHHH-HHHH--HcCCEEEEecCC--------CeeeeEEEECCCEEEEeCcccCHh---------------
Confidence 111110 011111 3343 379999877532 479999999999999999999410
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhh
Q 001225 526 LWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAK 588 (1120)
Q Consensus 526 ~~pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~ 588 (1120)
. =...|.+..+...|+.|.++.+.|.++|..+.
T Consensus 449 --------S----------------------~~~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~ 481 (509)
T PRK12452 449 --------S----------------------FELNYEIISVLYESETVHDIKRDFEDDFKHST 481 (509)
T ss_pred --------H----------------------hhhhhhccEEEECHHHHHHHHHHHHHHHHhCe
Confidence 0 01246678888899999999999999998653
No 27
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.23 E-value=4.6e-11 Score=117.17 Aligned_cols=104 Identities=17% Similarity=0.369 Sum_probs=80.5
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAV 136 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 136 (1120)
+++|.+++-.. ..++|+|+++.+..+|+|.|||+||..||.+|+... ++
T Consensus 5 ~v~I~~~~~~~------~~~~Y~I~V~~~~~~w~V~RRYseF~~L~~~L~~~~-------------------~~------ 53 (116)
T cd06875 5 KIRIPSAETVE------GYTVYIIEVKVGSVEWTVKHRYSDFAELHDKLVAEH-------------------KV------ 53 (116)
T ss_pred EEEECCEEEEC------CEEEEEEEEEECCeEEEEEecHHHHHHHHHHHHHHc-------------------Cc------
Confidence 67888776432 278999999999999999999999999999888511 00
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceecc
Q 001225 137 VQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSR 214 (1120)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~ 214 (1120)
..-.+|+ |..+|+. .+.+.|+.+||+||+.||..+...++.++.+||+++.
T Consensus 54 --------------------~~~~~P~-------Kk~~~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~~ 106 (116)
T cd06875 54 --------------------DKDLLPP-------KKLIGNKSPSFVEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFHK 106 (116)
T ss_pred --------------------ccCcCCC-------ccccCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCCc
Confidence 0011233 3344543 6667777899999999999999999999999999999
Q ss_pred cccc
Q 001225 215 LSFS 218 (1120)
Q Consensus 215 lsf~ 218 (1120)
++.+
T Consensus 107 ~~~~ 110 (116)
T cd06875 107 YEII 110 (116)
T ss_pred eeEe
Confidence 9755
No 28
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.16 E-value=1.2e-10 Score=113.69 Aligned_cols=114 Identities=31% Similarity=0.466 Sum_probs=72.7
Q ss_pred HHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchhHHHHHHHH
Q 001225 789 CSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAATVRAIIHW 868 (1120)
Q Consensus 789 l~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~~~r~im~~ 868 (1120)
+++|.+|++.|+|..+||... .|.++|..+ +.+|++|.|++...++ +.+... ..
T Consensus 2 ~~~i~~A~~~i~i~~~~~~~~---------~i~~~l~~~------~~~gv~v~ii~~~~~~------~~~~~~-~~---- 55 (126)
T PF13091_consen 2 IDLIKSAQKSIWIASPYITDP---------DIIKALLDA------AKRGVKVRIIVDSNQD------DSEAIN-LA---- 55 (126)
T ss_dssp HHHHHT-SSEEEEEESSS-SC---------HHHHHHHHH------HHTT-EEEEEEECGGG------HHCCCS-HH----
T ss_pred HHHHhccCCEEEEEEEecCcH---------HHHHHHHHH------HHCCCeEEEEECCCcc------ccchhh-hH----
Confidence 689999999999999999433 466666542 4569999999985321 000000 00
Q ss_pred HHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEeccEEEEcccccccCCCCCCC
Q 001225 869 QYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDDRAALIGSSNINDRSLLGSR 948 (1120)
Q Consensus 869 qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~ 948 (1120)
....+..+....|+.++ -++|+|++|+||+++++||+|++.+|+ .+
T Consensus 56 --------~~~~~~~~~~~~~i~v~------------------------~~~H~K~~i~d~~~~iiGS~N~t~~~~--~~ 101 (126)
T PF13091_consen 56 --------SLKELRELLKNAGIEVR------------------------NRLHAKFYIIDDKVAIIGSANLTSSSF--RR 101 (126)
T ss_dssp --------HHHHHHHHHHHTTHCEE------------------------S-B--EEEEETTTEEEEES--CSCCCS--CT
T ss_pred --------HHHHHHhhhccceEEEe------------------------cCCCcceEEecCccEEEcCCCCCcchh--cC
Confidence 01122333222454432 188999999999999999999999999 59
Q ss_pred CceeeEEEEccchh
Q 001225 949 DSEIDVVIEDKEFL 962 (1120)
Q Consensus 949 DsEi~v~i~D~~~v 962 (1120)
|.|+++.+.|++.+
T Consensus 102 n~E~~~~~~~~~~~ 115 (126)
T PF13091_consen 102 NYELGVIIDDPELV 115 (126)
T ss_dssp SEEEEEEEECHHHH
T ss_pred CcceEEEEECHHHH
Confidence 99999999998644
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1.6e-10 Score=126.62 Aligned_cols=93 Identities=16% Similarity=0.371 Sum_probs=80.0
Q ss_pred CceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCC
Q 001225 73 PMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHP 152 (1120)
Q Consensus 73 ~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (1120)
..+|+|.|.++.|...|+|+|||+||..||.+|.. |
T Consensus 25 ~~~t~y~i~v~~g~~ew~v~~ry~df~~lheklv~-----e--------------------------------------- 60 (490)
T KOG1259|consen 25 GGVTYYDIKVRVGKVEWLVERRYRDFANLHEKLVG-----E--------------------------------------- 60 (490)
T ss_pred CceEEEEEEEEecceeeeehhhhhHHHHHHHHhhh-----h---------------------------------------
Confidence 34899999999999999999999999999998874 1
Q ss_pred CccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceeccccc
Q 001225 153 SESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSRLSF 217 (1120)
Q Consensus 153 ~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~lsf 217 (1120)
.+..+..+|+ ++.+|+. ++.++|+++||-|||+||-..+-..++.+++||+|+.|..
T Consensus 61 -~~i~k~llpp-------kk~ig~~~~s~~e~r~~~leiylq~ll~~f~~~~pr~la~fl~f~~y~i 119 (490)
T KOG1259|consen 61 -ISISKKLLPP-------KKLVGNKQPSFLEQRREQLEIYLQELLIYFRTELPRALAEFLDFNKYDI 119 (490)
T ss_pred -heeccccCCc-------hhhcCCCChhHHHHHHHHHHHHHHHHHHHccccCHHHHHHHhccchHHH
Confidence 0334566777 6777865 8889999999999999998888889999999999999984
No 30
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.06 E-value=7.1e-10 Score=110.51 Aligned_cols=106 Identities=22% Similarity=0.335 Sum_probs=75.3
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeee----------EEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQF----------KWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQ 126 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~f----------kWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~ 126 (1120)
+|.|.+++-....+ ...++|.|+++-..- .|+|.|||+||..||.+|+. .
T Consensus 10 ~~~I~~~~~~~~~~--~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~-----~------------- 69 (127)
T cd06878 10 RANIQSAEVTVEDD--KEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKE-----C------------- 69 (127)
T ss_pred eEEEeeeEEEcCCC--eEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHH-----H-------------
Confidence 68888888532221 247899999997543 49999999999999998884 1
Q ss_pred hcccccccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccch
Q 001225 127 SIGIVDQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSR 204 (1120)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~ 204 (1120)
+ | ..+...+|. +| ++.+++. .+.++||.+||+||+.||..+.++++.
T Consensus 70 ------~---------------~-----~~~~~~lP~---pp--Kk~~~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~ 118 (127)
T cd06878 70 ------S---------------S-----WLKKVELPS---LS--KKWFKSIDKKFLDKSKNQLQKYLQFILEDETLCQSE 118 (127)
T ss_pred ------C---------------C-----CccccCCCC---CC--ccccccCCHHHHHHHHHHHHHHHHHHhCChhhcCCH
Confidence 0 0 001112222 12 2334433 677788899999999999999999999
Q ss_pred hccccceec
Q 001225 205 EVCKFLEVS 213 (1120)
Q Consensus 205 ~l~~FLEvS 213 (1120)
.+.+||..|
T Consensus 119 ~l~~FLsp~ 127 (127)
T cd06878 119 ALYSFLSPS 127 (127)
T ss_pred HHHHHcCCC
Confidence 999999865
No 31
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.02 E-value=1.3e-09 Score=105.46 Aligned_cols=100 Identities=17% Similarity=0.276 Sum_probs=75.7
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEee-eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYK-QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVA 135 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG-~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 135 (1120)
+|+|.+.++..++. ..+++|+|+++.+ .-+|+|.|||+||..||.+|+. + .
T Consensus 2 ~~~v~~~~~~~~~~--~~y~vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~----------------~--------~-- 53 (107)
T cd06872 2 SCRVLGAEIVKSGS--KSFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKE----------------V--------P-- 53 (107)
T ss_pred eeEEeeeEEEecCC--ccEEEEEEEEEECCCceEEEEehHHHHHHHHHHHHh----------------c--------c--
Confidence 68999999987764 2378999999984 7899999999999999997763 0 0
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCCCccccccccccc-cc--ccHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 136 VVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVL-GK--QTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l-~~--~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
+. .-.+|+ |..+ ++ ..+.++|+.+||+||+.|+..+.++++..+.+||.
T Consensus 54 -------------------~~-~~~lP~-------K~~~~~~~~~~fie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~ 105 (107)
T cd06872 54 -------------------KY-NLELPP-------KRFLSSSLDGAFIEERCKLLDKYLKDLLVIEKVAESHEVWSFLS 105 (107)
T ss_pred -------------------CC-CCCCCC-------ccccCCCCCHHHHHHHHHHHHHHHHHHhcChhhhcCHHHHHHhc
Confidence 00 001232 2222 22 26677777999999999999999999999999984
No 32
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.02 E-value=3.9e-09 Score=103.04 Aligned_cols=123 Identities=22% Similarity=0.336 Sum_probs=80.1
Q ss_pred HHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhcchhhHHHHHc--cc
Q 001225 390 IASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKINSMYSKKRLLK--IH 467 (1120)
Q Consensus 390 l~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~s~~~k~~L~~--~~ 467 (1120)
|.++|++|+++|+|+.+++ . ...|.+.|..++++||+|+|++........ .........+.. ..
T Consensus 1 l~~~i~~A~~~i~i~~~~~-------~------~~~i~~~l~~~~~~gv~v~ii~~~~~~~~~-~~~~~~~~~~~~~~~~ 66 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYI-------T------DPDIIKALLDAAKRGVKVRIIVDSNQDDSE-AINLASLKELRELLKN 66 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS--------------SCHHHHHHHHHHHTT-EEEEEEECGGGHHC-CCSHHHHHHHHHHHHH
T ss_pred CHHHHhccCCEEEEEEEec-------C------cHHHHHHHHHHHHCCCeEEEEECCCccccc-hhhhHHHHHHHhhhcc
Confidence 5789999999999975444 1 246788888899999999999865332110 101111122222 13
Q ss_pred CCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCccchh
Q 001225 468 ENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDYYNPRESEPNSWEDTM 547 (1120)
Q Consensus 468 ~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~~~~~~~~ 547 (1120)
.+++|. ...|.|++|||+++|++|+.|++...|
T Consensus 67 ~~i~v~------------~~~H~K~~i~d~~~~iiGS~N~t~~~~----------------------------------- 99 (126)
T PF13091_consen 67 AGIEVR------------NRLHAKFYIIDDKVAIIGSANLTSSSF----------------------------------- 99 (126)
T ss_dssp TTHCEE------------S-B--EEEEETTTEEEEES--CSCCCS-----------------------------------
T ss_pred ceEEEe------------cCCCcceEEecCccEEEcCCCCCcchh-----------------------------------
Confidence 677764 267999999999999999999963211
Q ss_pred hhhhhcCCCCCCCeEeeeeEEeChH-HHHHHHHHHHHH
Q 001225 548 KDELEREKYPRMPWHDVHCALWGPP-CRDIARHFVQRW 584 (1120)
Q Consensus 548 ~~~~dr~~~pr~pWhDv~~~v~Gpa-a~dl~~~F~qrW 584 (1120)
...++..+.+.+|. +.++.+.|.+.|
T Consensus 100 -----------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 -----------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -----------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -----------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 13468999999996 999999999989
No 33
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=98.99 E-value=2.1e-09 Score=106.20 Aligned_cols=89 Identities=22% Similarity=0.423 Sum_probs=68.7
Q ss_pred eeEEEEEEEeeee---EEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCC
Q 001225 75 LLSYTIELQYKQF---KWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMH 151 (1120)
Q Consensus 75 ~~~YtIeL~hG~f---kWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (1120)
.+.|.|++++|.+ .|+|.|||+||..||.+|+. . ++ ..|
T Consensus 21 ~t~Y~I~v~~~~~~~~~w~V~RRYsdF~~Lh~~L~~-----~---------------~~----------------~~p-- 62 (120)
T cd06871 21 HTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQI-----S---------------GI----------------SLP-- 62 (120)
T ss_pred cEEEEEEEEECCcCCceeEEEeeHHHHHHHHHHHHH-----c---------------CC----------------CCC--
Confidence 6899999999865 89999999999999997763 0 00 000
Q ss_pred CCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceeccccc
Q 001225 152 PSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSRLSF 217 (1120)
Q Consensus 152 ~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~lsf 217 (1120)
+|+ |+.+|+. .+.+.|+.+||.||+.|+..+.++++..+.+||+.+.++.
T Consensus 63 ---------lP~-------K~~~g~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~~~ 114 (120)
T cd06871 63 ---------LPP-------KKLIGNMDREFIAERQQGLQNYLNVILMNPILASCLPVKKFLDPNNYSA 114 (120)
T ss_pred ---------CCC-------ccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCHHHHHhcCcccCCc
Confidence 122 2334432 5666677899999999999999999999999999988873
No 34
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=98.98 E-value=1.2e-09 Score=104.33 Aligned_cols=104 Identities=24% Similarity=0.380 Sum_probs=71.0
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAV 136 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 136 (1120)
+|+|++.++..... ...+.|+|++..|...|+|.|+|+||..||.+|+....
T Consensus 5 ~v~v~~~~~~~~~~--~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~~~~-------------------------- 56 (113)
T PF00787_consen 5 QVSVVDPETSGNKK--KTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKKRFP-------------------------- 56 (113)
T ss_dssp EEEEEEEEEESSSS--EEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHT--------------------------
T ss_pred EEEEcCCEEEcCCC--EEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhhhhc--------------------------
Confidence 57888887663322 23445555555566799999999999999998885110
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCCCcccccccccccc-----cccHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 137 VQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLG-----KQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~-----~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
...+|+ +|.- ...+ ...+.++|+..||.||+.|+.++.+.++..+.+||+
T Consensus 57 ---------------------~~~~p~---~P~~-~~~~~~~~~~~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~ 111 (113)
T PF00787_consen 57 ---------------------SRKLPP---FPPK-QWFSNSRNLDPEFIEERRQALEKYLQSLLSHPELRSSEALKEFLE 111 (113)
T ss_dssp ---------------------TSGSTS---SSTS-SSSSSSSTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHC
T ss_pred ---------------------cccccc---CCcc-ccccccccccHHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcC
Confidence 112233 2221 1111 125666777899999999999999988999999999
Q ss_pred ec
Q 001225 212 VS 213 (1120)
Q Consensus 212 vS 213 (1120)
.|
T Consensus 112 ~~ 113 (113)
T PF00787_consen 112 SS 113 (113)
T ss_dssp T-
T ss_pred CC
Confidence 76
No 35
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=98.95 E-value=2.5e-09 Score=103.30 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=67.0
Q ss_pred eeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCCCc
Q 001225 75 LLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHPSE 154 (1120)
Q Consensus 75 ~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1120)
.+.|+|+++.+...|+|.|||+||..||.+|+. . + |
T Consensus 15 ~~~Y~I~v~~~~~~~~v~rRYseF~~L~~~L~~-----~-------------------~---------------~----- 50 (108)
T cd06897 15 YTVYNIQVRLPLRSYTVSRRYSEFVALHKQLES-----E-------------------V---------------G----- 50 (108)
T ss_pred eEEEEEEEEcCCceEEEEcchHHHHHHHHHHHH-----H-------------------c---------------C-----
Confidence 689999999999999999999999999998874 1 0 0
Q ss_pred cccccCCCCcccccccccccc--cc--cHHHHHHHHHHHHHHHHHhhc--ccccchhcccccee
Q 001225 155 SVRNRYVPSMAALSILRPVLG--KQ--TVAERAKVAMQGYLNHFMGNI--DIVNSREVCKFLEV 212 (1120)
Q Consensus 155 ~~~~r~~Ps~~~lp~~r~~l~--~~--~~~~rrr~~LE~YL~~LL~~~--~~~~~~~l~~FLEv 212 (1120)
...+|+ ||. |..++ +. .+.+.|+++||.||+.|+..+ .+.++..+.+||++
T Consensus 51 ---~~~~p~---lP~-K~~~~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~ 107 (108)
T cd06897 51 ---IEPPYP---LPP-KSWFLSTSSNPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNL 107 (108)
T ss_pred ---CCCCCC---CCC-cCEecccCCCHHHHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCC
Confidence 001122 332 23333 22 666677789999999999999 99999999999985
No 36
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=98.95 E-value=5.2e-09 Score=103.77 Aligned_cols=116 Identities=17% Similarity=0.269 Sum_probs=82.0
Q ss_pred CC-ceEEeeeeccCCCCCCCceeEEEEEEEee-eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccc
Q 001225 55 LP-KATIVAVSRPDSSDISPMLLSYTIELQYK-QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVD 132 (1120)
Q Consensus 55 ~p-~~~I~~ver~~s~~~~~~~~~YtIeL~hG-~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~ 132 (1120)
+| .++|.+++..... ...++|+|+++.. .-.|+|.|||+||..||.+|+. . .|...
T Consensus 2 ~~i~~~I~~~~~~~~~---~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~-----~--------------fp~~~ 59 (123)
T cd06882 2 VAVSATIADIEEKRGF---TNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEE-----R--------------FGPEA 59 (123)
T ss_pred CcEEEEEeeeeEEeCC---CCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHH-----h--------------CCccc
Confidence 45 7899999764221 3478999999863 4589999999999999998874 1 11000
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc-cHHHHHHHHHHHHHHHHHhhcc-cccchhccccc
Q 001225 133 QVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ-TVAERAKVAMQGYLNHFMGNID-IVNSREVCKFL 210 (1120)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~-~~~~rrr~~LE~YL~~LL~~~~-~~~~~~l~~FL 210 (1120)
- . ..+.+.+|. ||. +..+|+. .+.++|+..||.||+.|++.+. +..+..+..||
T Consensus 60 ~--------------~------~~~~~~lP~---lP~-k~~~~~~~~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl 115 (123)
T cd06882 60 G--------------S------SAYDCTLPT---LPG-KIYVGRKAEIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFF 115 (123)
T ss_pred c--------------c------CCCCCccCC---CCC-CeecCccHHHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHh
Confidence 0 0 112344555 552 2235544 7888888999999999998876 78999999999
Q ss_pred eecccc
Q 001225 211 EVSRLS 216 (1120)
Q Consensus 211 EvS~ls 216 (1120)
..+.-.
T Consensus 116 ~~~~~d 121 (123)
T cd06882 116 YQTESD 121 (123)
T ss_pred CCCccc
Confidence 987653
No 37
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=98.93 E-value=5e-09 Score=101.95 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=71.9
Q ss_pred eEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccc
Q 001225 58 ATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVV 137 (1120)
Q Consensus 58 ~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1120)
|+|.+++..+... ...+++|+|+++.+.-.|+|.|||+||..||.+|+. . .+
T Consensus 3 V~Ip~~~~~~~~~-~~~y~~Y~I~v~~~~~~~~v~RRYseF~~Lh~~L~~-----~--------------~~-------- 54 (110)
T cd06880 3 VSIPSYRLEVDES-EKPYTVFTIEVLVNGRRHTVEKRYSEFHALHKKLKK-----S--------------IK-------- 54 (110)
T ss_pred EEeCcEEEeeCCC-CCCeEEEEEEEEECCeEEEEEccHHHHHHHHHHHHH-----H--------------CC--------
Confidence 4555554433221 124789999999999999999999999999998874 0 01
Q ss_pred cCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceeccc
Q 001225 138 QDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSRL 215 (1120)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~l 215 (1120)
+|. ||. +.+++. .+.+.|+.+||+||+.|+..+. .+..+.+||++...
T Consensus 55 -----------------------~p~---~P~--K~~~~~~~~~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~~~ 104 (110)
T cd06880 55 -----------------------TPD---FPP--KRVRNWNPKVLEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVRHF 104 (110)
T ss_pred -----------------------CCC---CCC--CCccCCCHHHHHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCCCC
Confidence 111 221 123322 5666677899999999998877 69999999999876
Q ss_pred c
Q 001225 216 S 216 (1120)
Q Consensus 216 s 216 (1120)
.
T Consensus 105 ~ 105 (110)
T cd06880 105 P 105 (110)
T ss_pred C
Confidence 5
No 38
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=98.93 E-value=4.9e-09 Score=103.40 Aligned_cols=106 Identities=14% Similarity=0.255 Sum_probs=73.9
Q ss_pred CceEEeeeeccCCCCCCCceeEEEEEEE--------eeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhh
Q 001225 56 PKATIVAVSRPDSSDISPMLLSYTIELQ--------YKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQS 127 (1120)
Q Consensus 56 p~~~I~~ver~~s~~~~~~~~~YtIeL~--------hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~ 127 (1120)
+.++|.+++-.........+++|.|+++ .+.-.|+|.|||+||..||.+|+. .
T Consensus 3 ~~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~-----~-------------- 63 (119)
T cd06877 3 WRVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTE-----F-------------- 63 (119)
T ss_pred ceEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHH-----H--------------
Confidence 4677777654311001124789999999 445799999999999999998874 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchh
Q 001225 128 IGIVDQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSRE 205 (1120)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~ 205 (1120)
+. .. ..|+ ||. |..+++. .+.++||.+||+||+.|+..+.++.+..
T Consensus 64 -----~~--------------------~~---~~~~---lP~-K~~~~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~ 111 (119)
T cd06877 64 -----HG--------------------EF---PDAP---LPS-RRIFGPKSYEFLESKREIFEEFLQKLLQKPELRGSEL 111 (119)
T ss_pred -----CC--------------------CC---CCCC---CcC-CcccCCCCHHHHHHHHHHHHHHHHHHhCCcccccCHH
Confidence 10 00 0122 331 3334433 6777777899999999999999999999
Q ss_pred cccccee
Q 001225 206 VCKFLEV 212 (1120)
Q Consensus 206 l~~FLEv 212 (1120)
+.+||..
T Consensus 112 ~~~FL~~ 118 (119)
T cd06877 112 LYDFLSP 118 (119)
T ss_pred HHHhCCC
Confidence 9999975
No 39
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.92 E-value=7.2e-09 Score=122.08 Aligned_cols=135 Identities=20% Similarity=0.229 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchhH
Q 001225 782 GSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAAT 861 (1120)
Q Consensus 782 ~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~~ 861 (1120)
.+...+.+++|++|+++||||+.+|..+ .++.+|.+.+++| +++||+|+|+++.... ...
T Consensus 17 ~e~~~~l~~~I~~Ak~~I~i~~yi~~~d---------~~g~~l~~aL~~a--a~rGV~Vril~D~~gs----~~~----- 76 (411)
T PRK11263 17 EQYYPRVFEAIAAAQEEILLETFILFED---------KVGKQLHAALLAA--AQRGVKVEVLVDGYGS----PDL----- 76 (411)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEEEEecC---------chHHHHHHHHHHH--HHCCCEEEEEEECCCC----CCC-----
Confidence 4799999999999999999999777654 2455555555555 4579999999985411 110
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEeccEEEEccccccc
Q 001225 862 VRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDDRAALIGSSNIND 941 (1120)
Q Consensus 862 ~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN~ 941 (1120)
...+++.|.+ .|+++..|-....+..+ +++-. -..|.|++|||+++++|||.|+.+
T Consensus 77 ---------------~~~~~~~L~~-aGv~v~~~~p~~~~~~~-~~~~~-------~R~HrKiiVIDg~~a~vGg~N~~~ 132 (411)
T PRK11263 77 ---------------SDEFVNELTA-AGVRFRYFDPRPRLLGM-RTNLF-------RRMHRKIVVIDGRIAFVGGINYSA 132 (411)
T ss_pred ---------------CHHHHHHHHH-CCeEEEEeCCccccccc-ccccc-------cCCcceEEEEcCCEEEEcCeEchH
Confidence 1134567777 78776543110000000 00000 157999999999999999999977
Q ss_pred CCC--CCC-CCceeeEEEEccc
Q 001225 942 RSL--LGS-RDSEIDVVIEDKE 960 (1120)
Q Consensus 942 RSm--~G~-~DsEi~v~i~D~~ 960 (1120)
..+ .|. .-..+++.|+++-
T Consensus 133 ~~~~~~g~~~w~D~~v~i~Gp~ 154 (411)
T PRK11263 133 DHLSDYGPEAKQDYAVEVEGPV 154 (411)
T ss_pred hhccccCCCCceEEEEEEECHH
Confidence 444 121 1356778888764
No 40
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=98.90 E-value=6.7e-09 Score=100.95 Aligned_cols=102 Identities=18% Similarity=0.326 Sum_probs=76.2
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeee-eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQ-FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVA 135 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~-fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 135 (1120)
++.|++.+..+... ..++|.|+++.+. =.|+|.|||+||..||.+|+. . +
T Consensus 5 ~~~i~~~~~~~~~~---~~~vY~I~v~~~~~~~~~v~RRYsdF~~L~~~L~~-----~-------------------~-- 55 (110)
T cd07276 5 RPPILGYEVMEERA---RFTVYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQ-----M-------------------F-- 55 (110)
T ss_pred cceeeeEEEeecCC---CeEEEEEEEEECCCCEEEEEEehHHHHHHHHHHHH-----H-------------------C--
Confidence 78899988654421 3789999999874 689999999999999998874 1 0
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCCCccccccccccccc---ccHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 136 VVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGK---QTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~---~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
| ..+|+ ||. +..++. ..+.+.|+.+||+||+.|+..+.+.++..+.+||.+
T Consensus 56 -------------~---------~~~~~---lP~-K~~~~~~~~~~fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~ 109 (110)
T cd07276 56 -------------P---------GFRLS---LPP-KRWFKDNFDPDFLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCL 109 (110)
T ss_pred -------------C---------CCCCC---CCC-cceecccCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhcc
Confidence 0 01122 331 222332 267777778999999999999999999999999987
Q ss_pred c
Q 001225 213 S 213 (1120)
Q Consensus 213 S 213 (1120)
+
T Consensus 110 ~ 110 (110)
T cd07276 110 D 110 (110)
T ss_pred C
Confidence 5
No 41
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=98.87 E-value=1.6e-08 Score=121.68 Aligned_cols=145 Identities=21% Similarity=0.306 Sum_probs=103.1
Q ss_pred CceEEEEecHHH-----HHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccc
Q 001225 374 GSQAQWFIDGQA-----AFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEV 448 (1120)
Q Consensus 374 gn~v~~lvDG~~-----yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~ 448 (1120)
+..++++.+|.+ ....+.++|.+||++|+|+. -|+.. ...+.++|+.||+|||+|+|++.+..
T Consensus 302 ~~~~qi~~sgP~~~~~~~~~~~~~~I~~A~~~I~I~t------pYfip------~~~i~~aL~~Aa~rGV~Vril~p~~~ 369 (483)
T PRK01642 302 GHTVQVIASGPGDPEETIHQFLLTAIYSARERLWITT------PYFVP------DEDLLAALKTAALRGVDVRIIIPSKN 369 (483)
T ss_pred CceEEEEeCCCCChhhHHHHHHHHHHHHhccEEEEEc------CCcCC------CHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 457888887754 66789999999999999952 25443 25899999999999999999985432
Q ss_pred hhhh-h-hcchhhHHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCC
Q 001225 449 SIAL-K-INSMYSKKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSL 526 (1120)
Q Consensus 449 ~~al-~-~~s~~~k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~ 526 (1120)
...+ . ....+. ..|. ..||++..+... ..|.|++|||+++|++|+.|+..--+
T Consensus 370 d~~~~~~~~~~~~-~~L~--~~Gv~I~~y~~~--------~~HaK~~ivD~~~~~vGS~N~d~rS~-------------- 424 (483)
T PRK01642 370 DSLLVFWASRAFF-TELL--EAGVKIYRYEGG--------LLHTKSVLVDDELALVGTVNLDMRSF-------------- 424 (483)
T ss_pred CcHHHHHHHHHHH-HHHH--HcCCEEEEeCCC--------ceEeEEEEECCCEEEeeCCcCCHhHH--------------
Confidence 1111 0 011111 3343 378999877432 36999999999999999999941000
Q ss_pred CCCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeCh-HHHHHHHHHHHHHHhh
Q 001225 527 WPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGP-PCRDIARHFVQRWNHA 587 (1120)
Q Consensus 527 ~pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gp-aa~dl~~~F~qrWn~~ 587 (1120)
+ -=+++.+.+.++ .+.++.+.|.++|...
T Consensus 425 -----~---------------------------~N~E~~~~i~d~~~~~~l~~~f~~d~~~s 454 (483)
T PRK01642 425 -----W---------------------------LNFEITLVIDDTGFAADLAAMQEDYFARS 454 (483)
T ss_pred -----h---------------------------hhhcceEEEECHHHHHHHHHHHHHHHHhC
Confidence 0 113678888887 5899999999999754
No 42
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=98.84 E-value=1.4e-08 Score=98.47 Aligned_cols=88 Identities=14% Similarity=0.362 Sum_probs=67.1
Q ss_pred ceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCCC
Q 001225 74 MLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHPS 153 (1120)
Q Consensus 74 ~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1120)
.+++|.|+++.|.-.|+|.|||+||..||.+|+. . . |.
T Consensus 19 ~~~~Y~I~v~~~~~~~~v~RRYseF~~L~~~L~~-----~-------------------~---------------~~--- 56 (109)
T cd06870 19 RFTVYKVVVSVGRSSWFVFRRYAEFDKLYESLKK-----Q-------------------F---------------PA--- 56 (109)
T ss_pred CeEEEEEEEEECCeEEEEEeehHHHHHHHHHHHH-----H-------------------C---------------cc---
Confidence 4789999999999999999999999999998874 1 0 00
Q ss_pred ccccccCCCCcccccccccccc-cc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceec
Q 001225 154 ESVRNRYVPSMAALSILRPVLG-KQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVS 213 (1120)
Q Consensus 154 ~~~~~r~~Ps~~~lp~~r~~l~-~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS 213 (1120)
... .+|+ |..+| +. .+.+.|+.+||+||+.|+..+.+.++..+.+||++.
T Consensus 57 --~~~-~lP~-------K~~~~~~~~~~~ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 57 --SNL-KIPG-------KRLFGNNFDPDFIKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred --cCc-CCCC-------CcccccCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 000 1222 22344 22 566677789999999999999999999999999874
No 43
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=98.80 E-value=2.3e-08 Score=97.16 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=72.5
Q ss_pred eEEeeeecc-CCCCCCCceeEEEEEEEee--eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccc
Q 001225 58 ATIVAVSRP-DSSDISPMLLSYTIELQYK--QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQV 134 (1120)
Q Consensus 58 ~~I~~ver~-~s~~~~~~~~~YtIeL~hG--~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 134 (1120)
|+|+++|.- +.+. .++|.|+++.. .-+|+|.|||+||..||.+|+. . +
T Consensus 2 ~~i~~~~~~~~~~~----~~vY~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~-----~-------------------f- 52 (109)
T cd06883 2 VSVFGFQKRYSPEK----YYIYVVKVTRENQTEPSFVFRTFEEFQELHNKLSL-----L-------------------F- 52 (109)
T ss_pred cEEEEEEEEecCCc----eEEEEEEEEECCCCCeEEEEecHHHHHHHHHHHHH-----H-------------------C-
Confidence 688888753 3322 68999999984 3789999999999999998874 1 0
Q ss_pred ccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc---cHHHHHHHHHHHHHHHHHhhc-ccccchhccccc
Q 001225 135 AVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ---TVAERAKVAMQGYLNHFMGNI-DIVNSREVCKFL 210 (1120)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~---~~~~rrr~~LE~YL~~LL~~~-~~~~~~~l~~FL 210 (1120)
| ...+|. ||. +..+++. .+.++|+.+||+||+.||..+ .+.++..+.+||
T Consensus 53 --------------p--------~~~lp~---lP~-k~~~~~~~~~~~~e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~ 106 (109)
T cd06883 53 --------------P--------SLKLPS---FPA-RVVLGRSHIKQVAERRKIELNSYLKSLFNASPEVAESDLVYTFF 106 (109)
T ss_pred --------------C--------CCcCCC---CCC-CcccCccchhHHHHHHHHHHHHHHHHHHcCCHHHhcCHHHHHhc
Confidence 0 001222 332 2234432 567777789999999999885 678999999999
Q ss_pred ee
Q 001225 211 EV 212 (1120)
Q Consensus 211 Ev 212 (1120)
..
T Consensus 107 ~~ 108 (109)
T cd06883 107 HP 108 (109)
T ss_pred CC
Confidence 75
No 44
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.77 E-value=1.5e-09 Score=80.04 Aligned_cols=27 Identities=56% Similarity=0.987 Sum_probs=18.9
Q ss_pred cccCcceEEEEeCCeEEEccccCCCCC
Q 001225 485 LWSHHEKLVIVDYRISFIGGLDLCFGR 511 (1120)
Q Consensus 485 ~~rhH~KivVID~~vAFvGGinL~~GR 511 (1120)
.|+||+|++|||+++||+||+|||.||
T Consensus 2 ~~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTTEEEEE---SSHHH
T ss_pred CcceeeEEEEEcCCEEEECceecCCCC
Confidence 589999999999999999999999654
No 45
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=98.75 E-value=3.6e-08 Score=97.38 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=73.0
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEe-----eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQY-----KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIV 131 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~h-----G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~ 131 (1120)
+|.|++++....+. ..+++|.|++.. +.-.|+|.|||+||..||.+|+. .
T Consensus 6 ~~~i~~~~~~~~~~--~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~-----~------------------ 60 (120)
T cd06873 6 TAVIINTGIVKEHG--KTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKE-----K------------------ 60 (120)
T ss_pred EEEEeccEEEccCC--ceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHH-----H------------------
Confidence 68888888765432 347899999986 44689999999999999998874 1
Q ss_pred cccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccc----hh
Q 001225 132 DQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNS----RE 205 (1120)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~----~~ 205 (1120)
+ | .. .+|+ ||. +..+++. .+.++|+.+||+||+.||..+.++++ ..
T Consensus 61 -~---------------p-----~~---~~~~---lP~-K~~~~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~ 112 (120)
T cd06873 61 -F---------------P-----NL---SKLS---FPG-KKTFNNLDRAFLEKRRKMLNQYLQSLLNPEVLDANPGLQEI 112 (120)
T ss_pred -C---------------c-----CC---CCCC---CCC-CcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhccCHHHHHH
Confidence 0 0 00 0122 231 2223432 67777778999999999999998877 57
Q ss_pred cccccee
Q 001225 206 VCKFLEV 212 (1120)
Q Consensus 206 l~~FLEv 212 (1120)
+..||+.
T Consensus 113 l~~FL~~ 119 (120)
T cd06873 113 VLDFLEP 119 (120)
T ss_pred HHHHcCC
Confidence 7778764
No 46
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.75 E-value=5.9e-08 Score=115.49 Aligned_cols=139 Identities=22% Similarity=0.308 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchhHH
Q 001225 783 SIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAATV 862 (1120)
Q Consensus 783 sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~~~ 862 (1120)
..+.+++++|++|+++||||+-||-.+ .+-.+|.+||. +|.++++||+|.|++-..-+--|-++..+.
T Consensus 35 ~f~~~Ll~~I~~Ak~~I~l~~y~~~~D-----~~g~~il~AL~----~a~~~~~gv~VrvLvD~~Ra~Rg~iG~~~~--- 102 (451)
T PRK09428 35 DFRETLLEKIASAKKRIYIVALYLEDD-----EAGREILDALY----QAKQQNPELDIKVLVDWHRAQRGLIGAAAS--- 102 (451)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEecCC-----chHHHHHHHHH----HHHhcCCCcEEEEEEEcccccccccccCCC---
Confidence 599999999999999999999887765 23345555554 466678999999999853221111111100
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhh-CCCccceeeEeeecc-ccccCCCCCccccceeeeeeEEEEeccEEEEcccccc
Q 001225 863 RAIIHWQYRTISREKTSILHKLSMLL-GPKTRDYISFYGLRS-YGRLCDGGPVATSQVYVHSKVMIIDDRAALIGSSNIN 940 (1120)
Q Consensus 863 r~im~~qy~TI~rG~~si~~~L~~~~-G~~~~~Yi~f~~Lr~-~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN 940 (1120)
.+..+++..|.++. |+++ .+|++.. ..++ .| ..|-|++||||++++.| ||||
T Consensus 103 ------------~~~~~~~~~l~~~~~gv~v----~~f~~p~~~~e~--~g-------r~HrKi~IiD~~v~ysG-aNi~ 156 (451)
T PRK09428 103 ------------NTNADWYCEMAQEYPGVDI----PVYGVPVNTREA--LG-------VLHLKGFIIDDTVLYSG-ASLN 156 (451)
T ss_pred ------------CcCHHHHHHHHHhCCCceE----EEcCCccccchh--hh-------hceeeEEEECCCEEEec-cccc
Confidence 01134566777633 3444 3554321 1111 12 37999999999999999 8999
Q ss_pred cCCCCCC-----CCceeeEEEEccchh
Q 001225 941 DRSLLGS-----RDSEIDVVIEDKEFL 962 (1120)
Q Consensus 941 ~RSm~G~-----~DsEi~v~i~D~~~v 962 (1120)
+--+ +. .|. .+.|+++...
T Consensus 157 d~Yl-~~~~~~r~Dr--y~~i~g~~la 180 (451)
T PRK09428 157 NVYL-HQHDKYRYDR--YHLIRNAELA 180 (451)
T ss_pred HHHh-cCCcccCcce--EEEEeCchHH
Confidence 9554 32 355 6668876643
No 47
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=98.74 E-value=6.2e-08 Score=94.63 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=76.9
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQY-KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVA 135 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~h-G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 135 (1120)
+|.|.++.-.+. ...|+|+++. +.-+|.|+|+|+||..||.+|.. .+-. .. |.
T Consensus 2 ~~~V~~~~~~~~------~y~Y~i~v~~s~~~~~~v~RrY~dFy~Lh~~L~~-----~fp~-------ea---g~----- 55 (112)
T cd06890 2 SASVESVLLEDN------RYWYRVRATLSDGKTRYLCRYYQDFYKLHIALLD-----LFPA-------EA---GR----- 55 (112)
T ss_pred eEEEEEEEEECC------EEEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHH-----hCcH-------hh---CC-----
Confidence 467777766533 5799999999 67899999999999999998874 1100 00 00
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCCCccccccccccccc-c-cHHHHHHHHHHHHHHHHHhhc-ccccchhcccccee
Q 001225 136 VVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGK-Q-TVAERAKVAMQGYLNHFMGNI-DIVNSREVCKFLEV 212 (1120)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~-~-~~~~rrr~~LE~YL~~LL~~~-~~~~~~~l~~FLEv 212 (1120)
...++.+|. || ++..+. . .+.++|+..|+.||+.||..+ .+..+..+.+||+.
T Consensus 56 -------------------~~~~~~lP~---lP--~~~~~~~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 56 -------------------NSSKRILPY---LP--GPVTDVVNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred -------------------CCCCCcCCC---CC--CCccCcchhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 012456666 44 233333 3 677778899999999999999 77899999999975
No 48
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=98.73 E-value=4.4e-08 Score=96.70 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=73.5
Q ss_pred eEEeeeeccCCCCCCCceeEEEEEEEeee---eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccc
Q 001225 58 ATIVAVSRPDSSDISPMLLSYTIELQYKQ---FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQV 134 (1120)
Q Consensus 58 ~~I~~ver~~s~~~~~~~~~YtIeL~hG~---fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 134 (1120)
+.|.+.+..........+++|.|+++.+. -.|.|.|||+||..||.+|+. . +
T Consensus 5 i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~-----~-------------------~- 59 (120)
T cd07280 5 VNVGDYTIVGGDTGGGAYVVWKITIETKDLIGSSIVAYKRYSEFVQLREALLD-----E-------------------F- 59 (120)
T ss_pred EEcCCCeEECCCCCCCCEEEEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHH-----H-------------------C-
Confidence 45555554433211234789999999875 799999999999999998874 1 0
Q ss_pred ccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccc----cc--cHHHHHHHHHHHHHHHHHhhcccccchhccc
Q 001225 135 AVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLG----KQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCK 208 (1120)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~----~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~ 208 (1120)
| ......+|+ ||. |..++ +. .+.+.|++.||.||+.|+.++.+.++..+.+
T Consensus 60 --------------p-----~~~~~~~P~---lP~-K~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~ 116 (120)
T cd07280 60 --------------P-----RHKRNEIPQ---LPP-KVPWYDSRVNLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKE 116 (120)
T ss_pred --------------c-----ccccCcCCC---CCC-CcccccccccCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHH
Confidence 0 000123454 442 22233 22 6666777899999999999999999999999
Q ss_pred cce
Q 001225 209 FLE 211 (1120)
Q Consensus 209 FLE 211 (1120)
||+
T Consensus 117 FL~ 119 (120)
T cd07280 117 FLL 119 (120)
T ss_pred hhC
Confidence 997
No 49
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=98.73 E-value=3.2e-08 Score=94.12 Aligned_cols=85 Identities=27% Similarity=0.535 Sum_probs=59.6
Q ss_pred eEEEEEEEe--eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCCC
Q 001225 76 LSYTIELQY--KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHPS 153 (1120)
Q Consensus 76 ~~YtIeL~h--G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1120)
+.|+|++++ +..+|+|.|||+||..||.+|+. . .|
T Consensus 13 ~~~~~~v~~~~~~~~~~v~RRysdF~~L~~~L~~-----~--------------~~------------------------ 49 (105)
T smart00312 13 YYYVIEIETKTGLEEWTVSRRYSDFLELHSKLKK-----H--------------FP------------------------ 49 (105)
T ss_pred EEEEEEEEECCCCceEEEEEEHHHHHHHHHHHHH-----H--------------Cc------------------------
Confidence 455555555 55899999999999999998874 1 00
Q ss_pred ccccccCCCCcccccccccccc-----cccHHHHHHHHHHHHHHHHHhhccccc-chhccccce
Q 001225 154 ESVRNRYVPSMAALSILRPVLG-----KQTVAERAKVAMQGYLNHFMGNIDIVN-SREVCKFLE 211 (1120)
Q Consensus 154 ~~~~~r~~Ps~~~lp~~r~~l~-----~~~~~~rrr~~LE~YL~~LL~~~~~~~-~~~l~~FLE 211 (1120)
...+|+ ||. +..++ ...+.+.|+.+||+||+.|+..+.+.+ +..+.+||+
T Consensus 50 ----~~~lP~---lP~-k~~~~~~~~~~~~~i~~R~~~L~~yL~~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 50 ----RRILPP---LPP-KKLFGRLNNFSEEFIEKRRRGLERYLQSLLNHPELINESEVVLSFLE 105 (105)
T ss_pred ----CCCCCC---CCC-chhcccCCcCCHHHHHHHHHHHHHHHHHHHcCHhhhccChHHHHhcC
Confidence 011233 332 11222 125666677899999999999999988 899999986
No 50
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=98.71 E-value=7.7e-08 Score=96.66 Aligned_cols=104 Identities=20% Similarity=0.332 Sum_probs=71.7
Q ss_pred CceEEeeeeccCCCCCCCceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccc
Q 001225 56 PKATIVAVSRPDSSDISPMLLSYTIELQYK-----QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGI 130 (1120)
Q Consensus 56 p~~~I~~ver~~s~~~~~~~~~YtIeL~hG-----~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~ 130 (1120)
++|.|.+..-..... ...+++|+|+++.+ ...|+|.|||+||..||.+|+. . ++. +
T Consensus 20 ~~i~I~~~~~~~~~~-~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~-----~-------~~~----~-- 80 (133)
T cd06876 20 TRVSIQSYISDVEEE-GKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKK-----R-------YPG----V-- 80 (133)
T ss_pred ceEEEeeEEeeecCC-CceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHH-----H-------CcC----C--
Confidence 468888765433211 23478999999993 3799999999999999998874 1 000 0
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccc----cccHHHHHHHHHHHHHHHHHhhcccccchhc
Q 001225 131 VDQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLG----KQTVAERAKVAMQGYLNHFMGNIDIVNSREV 206 (1120)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~----~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l 206 (1120)
.+|+ ||. |..++ ...+.+.|+.+||+||+.|+..+.++++..+
T Consensus 81 -----------------------------~~p~---~P~-K~~~~~~~~~~~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l 127 (133)
T cd06876 81 -----------------------------LKLD---FPQ-KRKISLKYSKTLLVEERRKALEKYLQELLKIPEVCEDEEF 127 (133)
T ss_pred -----------------------------CCCC---CCc-cccccCccCCHHHHHHHHHHHHHHHHHHHcCccccCChHH
Confidence 0111 221 11122 2255666668999999999999999999999
Q ss_pred cccce
Q 001225 207 CKFLE 211 (1120)
Q Consensus 207 ~~FLE 211 (1120)
.+||.
T Consensus 128 ~~FLs 132 (133)
T cd06876 128 RKFLS 132 (133)
T ss_pred HHhhc
Confidence 99983
No 51
>PRK05443 polyphosphate kinase; Provisional
Probab=98.71 E-value=3.7e-08 Score=122.06 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=89.5
Q ss_pred HHHHHHHHhccC-----eEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchh
Q 001225 786 SAYCSLIESAEH-----FIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAA 860 (1120)
Q Consensus 786 ~ayl~aI~~A~h-----~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~ 860 (1120)
+..++.|++|.+ .|.|+- |-++. + ..|.+||.++ +++|++|.|++|+.+.|..
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tl-Yr~~~---~----s~iv~aL~~A------a~~Gk~V~vlve~karfde-------- 408 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTL-YRTSK---D----SPIVDALIEA------AENGKQVTVLVELKARFDE-------- 408 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEE-EEecC---C----HHHHHHHHHH------HHcCCEEEEEEccCccccH--------
Confidence 566789999999 799875 55543 1 2577787764 4569999999998865421
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCc-cceeeEeeeccccccCCCCCccccceeeeeeEEEEecc-------EE
Q 001225 861 TVRAIIHWQYRTISREKTSILHKLSMLLGPKT-RDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDDR-------AA 932 (1120)
Q Consensus 861 ~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~-~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~-------~~ 932 (1120)
.+-. +..++|.+ +|+.+ +.| .++ .+|||+++||++ ++
T Consensus 409 --~~n~------------~~~~~L~~-aGv~V~y~~-------------~~~-------k~HaK~~lid~~e~~~~~~~~ 453 (691)
T PRK05443 409 --EANI------------RWARRLEE-AGVHVVYGV-------------VGL-------KTHAKLALVVRREGGGLRRYV 453 (691)
T ss_pred --HHHH------------HHHHHHHH-cCCEEEEcc-------------CCc-------cceeEEEEEEeecCCceeEEE
Confidence 0111 23467877 89876 333 233 899999999999 99
Q ss_pred EEcccccccCCCCCCCCceeeEEEEccchh
Q 001225 933 LIGSSNINDRSLLGSRDSEIDVVIEDKEFL 962 (1120)
Q Consensus 933 iIGSANiN~RSm~G~~DsEi~v~i~D~~~v 962 (1120)
.|||+|+|.||. ..++|+++.+.|++++
T Consensus 454 ~iGTgN~n~~s~--~~y~D~~l~t~d~~i~ 481 (691)
T PRK05443 454 HLGTGNYNPKTA--RLYTDLSLLTADPEIG 481 (691)
T ss_pred EEcCCCCCcchh--hhccceeEEEeChHHH
Confidence 999999999999 5999999999998854
No 52
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.66 E-value=2e-07 Score=89.66 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=71.6
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeec
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLA 305 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~ 305 (1120)
|||||.|+.+. . . ..|++||||+++..|.|++++.+..+..+|.++..- . ...|..+
T Consensus 1 KeG~L~K~g~~-------------~----~-k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~--~---~~~v~~~ 57 (103)
T cd01251 1 KEGFMEKTGPK-------------H----T-EGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQE--D---GYEVREG 57 (103)
T ss_pred CceeEEecCCC-------------C----C-CCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccc--c---ceeEecc
Confidence 79999987310 0 1 469999999999999999999888888888776321 0 0111111
Q ss_pred ccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 306 SQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 306 ~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..........++|.|.+.+|+..|.|.|.....+|+++|+.+.
T Consensus 58 ~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~ 100 (103)
T cd01251 58 LPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVL 100 (103)
T ss_pred CCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 0000011123599999999999999999999999999999875
No 53
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=98.63 E-value=1.6e-07 Score=88.57 Aligned_cols=87 Identities=24% Similarity=0.443 Sum_probs=66.6
Q ss_pred ceeEEEEEEEeee-eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCC
Q 001225 74 MLLSYTIELQYKQ-FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHP 152 (1120)
Q Consensus 74 ~~~~YtIeL~hG~-fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (1120)
..+.|.|+++++. -.|.|.|+|+||..||.+|+. . +
T Consensus 16 ~~~~Y~i~v~~~~~~~~~v~rrysdF~~L~~~L~~-----~-------------------~------------------- 52 (106)
T cd06093 16 KYVVYIIEVTTQGGEEWTVYRRYSDFEELHEKLKK-----K-------------------F------------------- 52 (106)
T ss_pred CEEEEEEEEEECCCCeEEEEeehHHHHHHHHHHHH-----H-------------------C-------------------
Confidence 3689999999988 899999999999999998874 1 0
Q ss_pred CccccccCCCCccccccccccccc--ccHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 153 SESVRNRYVPSMAALSILRPVLGK--QTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 153 ~~~~~~r~~Ps~~~lp~~r~~l~~--~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
....+|+ ||. +...++ ..+.+.|+..||+||+.|+..+.+.++..+..||+
T Consensus 53 ----~~~~~p~---lP~-k~~~~~~~~~~~~~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 53 ----PGVILPP---LPP-KKLFGNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLE 105 (106)
T ss_pred ----CCCccCC---CCC-CcccccCCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhC
Confidence 0123344 443 222332 25666677899999999999999999999999986
No 54
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=98.63 E-value=2.5e-07 Score=91.05 Aligned_cols=113 Identities=15% Similarity=0.227 Sum_probs=78.5
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQY-KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVA 135 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~h-G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 135 (1120)
.|+|+++|+--... ..++|.|+++- +.-.|+|+|+|+||..||.+|+. . .|. .
T Consensus 3 ~~~~~~~~kr~~~~---~~y~Y~i~v~~s~~~~~~v~RrYsdF~~L~~~L~~-----~--------------fp~--E-- 56 (118)
T cd06887 3 HIALLGFEKRFVPS---QHYVYMFLVKWQDLSEKLVYRRFTEIYEFHKTLKE-----M--------------FPI--E-- 56 (118)
T ss_pred eEEEEEEEEeecCC---CcEEEEEEEEEcCCcEEEEEeeHHHHHHHHHHHHH-----h--------------CCc--c--
Confidence 68999999632211 26899888886 44579999999999999998884 1 111 0
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccccHHHHHHHHHHHHHHHHHhhc-ccccchhccccceecc
Q 001225 136 VVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQTVAERAKVAMQGYLNHFMGNI-DIVNSREVCKFLEVSR 214 (1120)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~~~~~rrr~~LE~YL~~LL~~~-~~~~~~~l~~FLEvS~ 214 (1120)
++ . .....+.+|+ ||- +..+++..+.+.|++.||.||++||..+ .+.++..+..||+..+
T Consensus 57 -------ag--~------~~~~~r~lP~---lP~-k~~~~~~~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~~ 117 (118)
T cd06887 57 -------AG--D------INKENRIIPH---LPA-PKWFDGQRAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVRP 117 (118)
T ss_pred -------cc--c------cCCCCCcCCC---CCC-CcccCcchHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcCC
Confidence 00 0 0123455566 552 2335555788888899999999998765 4689999999998753
No 55
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=98.62 E-value=1.8e-07 Score=91.33 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=73.8
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEE--eeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQ--YKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQV 134 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~--hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 134 (1120)
.|+|+++|+--... ..++|.|+++ -+.-.|.|.|+|+||..||.+|+. . .|+
T Consensus 3 ~v~v~~~~kr~~~~---~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~-----~--------------FP~---- 56 (111)
T cd06884 3 RVTVVGFQKRYDPE---KYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCR-----K--------------FPL---- 56 (111)
T ss_pred EEEEEEEEEEecCC---CeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHH-----H--------------CCC----
Confidence 58999999732221 2689999997 355799999999999999998874 1 111
Q ss_pred ccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc---cHHHHHHHHHHHHHHHHHhh-cccccchhccccc
Q 001225 135 AVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ---TVAERAKVAMQGYLNHFMGN-IDIVNSREVCKFL 210 (1120)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~---~~~~rrr~~LE~YL~~LL~~-~~~~~~~~l~~FL 210 (1120)
-.+|+ ||. +..+|+. .++++|+..||+||++||+. +.+..+..+..||
T Consensus 57 ------------------------~~lp~---LP~-k~~~~~~~~~~v~e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF 108 (111)
T cd06884 57 ------------------------AKLHP---LST-GSHVGRSNIKSVAEKRKQDIQQFLNSLFKMAEEVSHSDLVYTFF 108 (111)
T ss_pred ------------------------CCCCC---CCC-ceeecCCcchHHHHHHHHHHHHHHHHHHcCCHHHhcChHHHHhc
Confidence 01233 443 2334543 68888889999999999987 4578999999998
Q ss_pred e
Q 001225 211 E 211 (1120)
Q Consensus 211 E 211 (1120)
+
T Consensus 109 ~ 109 (111)
T cd06884 109 H 109 (111)
T ss_pred C
Confidence 6
No 56
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=98.62 E-value=9.8e-08 Score=95.79 Aligned_cols=88 Identities=18% Similarity=0.355 Sum_probs=66.9
Q ss_pred ceeEEEEEEEeee-----eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCC
Q 001225 74 MLLSYTIELQYKQ-----FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAV 148 (1120)
Q Consensus 74 ~~~~YtIeL~hG~-----fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1120)
..+.|+|++..+. ..|+|.|||+||..||..|+. . .
T Consensus 43 ~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~-----~-------------------~--------------- 83 (138)
T cd06879 43 VDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKK-----L-------------------F--------------- 83 (138)
T ss_pred ceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHH-----H-------------------C---------------
Confidence 3579999999983 699999999999999998874 1 0
Q ss_pred CCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 149 PMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 149 ~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
....+|+ +|. |..++.. ++.++||..||.||+.|+..+.++++..+.+|||+
T Consensus 84 --------p~~~lPp---lPp-K~~l~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~FLel 137 (138)
T cd06879 84 --------PKKKLPA---APP-KGLLRMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASFLEL 137 (138)
T ss_pred --------CCCcCCC---CCC-cccccCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHHhCC
Confidence 0012333 231 2334432 67777778999999999999999999999999986
No 57
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=98.61 E-value=2.1e-07 Score=91.85 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=64.0
Q ss_pred eeEEEEEEEeeee---EEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCC
Q 001225 75 LLSYTIELQYKQF---KWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMH 151 (1120)
Q Consensus 75 ~~~YtIeL~hG~f---kWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (1120)
.++|.|+++.+.. .|+|.|||+||..||.+|+. . + |
T Consensus 33 ~~~Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~~L~~-----~-------------------f---------------p-- 71 (119)
T cd06869 33 HYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLKK-----E-------------------F---------------P-- 71 (119)
T ss_pred eEEEEEEEEECCCCCCceEEEeeHHHHHHHHHHHHH-----H-------------------C---------------c--
Confidence 6899999999887 99999999999999998874 1 1 0
Q ss_pred CCccccccCCCCcccccccccccccccHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 152 PSESVRNRYVPSMAALSILRPVLGKQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 152 ~~~~~~~r~~Ps~~~lp~~r~~l~~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
...+|+ ||. +.. .+.++|+.+||+||+.|+..+.+.++..+..||.
T Consensus 72 ------~~~lP~---lP~--K~~---~~~E~Rr~~Le~yL~~Ll~~p~l~~s~~~~~FL~ 117 (119)
T cd06869 72 ------GKKLPK---LPH--KDK---LPREKLRLSLRQYLRSLLKDPEVAHSSILQEFLT 117 (119)
T ss_pred ------CCCCCC---CcC--Cch---hHHHHHHHHHHHHHHHHhcChhhhcChHHHHhhC
Confidence 012233 442 111 4556777899999999999999999999999985
No 58
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=98.60 E-value=1.5e-07 Score=91.10 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=61.2
Q ss_pred ceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCCC
Q 001225 74 MLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHPS 153 (1120)
Q Consensus 74 ~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1120)
.+++|.|+++ | .|+|.|||+||..||.+|+. . +
T Consensus 20 ~yvvY~I~~~-~--~~~v~rRyseF~~L~~~L~~-----~-------------------~-------------------- 52 (106)
T cd06886 20 KFVVYNIYMA-G--RQLCSRRYREFANLHQNLKK-----E-------------------F-------------------- 52 (106)
T ss_pred cEEEEEEEEc-C--CEEEEechHHHHHHHHHHHH-----H-------------------c--------------------
Confidence 4789999987 5 79999999999999998874 1 0
Q ss_pred ccccccCCCCcccccccccccc-cccHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 154 ESVRNRYVPSMAALSILRPVLG-KQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 154 ~~~~~r~~Ps~~~lp~~r~~l~-~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
....+|+ ||. +..+. ...+.+.||.+||.||+.|+..+.+.++..+.+||.
T Consensus 53 ---~~~~~p~---lP~-K~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 104 (106)
T cd06886 53 ---PDFQFPK---LPG-KWPFSLSEQQLDARRRGLEQYLEKVCSIRVIGESDIMQDFLS 104 (106)
T ss_pred ---CCCCCCC---CCC-CCcCCCCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhc
Confidence 0011222 231 11121 125566666899999999999999999999999985
No 59
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=98.60 E-value=2e-07 Score=91.08 Aligned_cols=89 Identities=16% Similarity=0.283 Sum_probs=66.1
Q ss_pred CceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCC
Q 001225 73 PMLLSYTIELQYK-----QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGA 147 (1120)
Q Consensus 73 ~~~~~YtIeL~hG-----~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1120)
..+++|+|..+-. .-.|+|.|||+||..||.+|.. . +
T Consensus 16 ~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~-----~-------------------~-------------- 57 (112)
T cd06861 16 SAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQN-----N-------------------H-------------- 57 (112)
T ss_pred cCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHH-----H-------------------C--------------
Confidence 3578999998853 3489999999999999998864 1 0
Q ss_pred CCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 148 VPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 148 ~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
| ...+|+ ||. |..+|+. .+.+.|+.+||.||+.|+..+.++++..+..||+.
T Consensus 58 -~--------~~~iP~---lP~-K~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 111 (112)
T cd06861 58 -P--------GVIVPP---PPE-KQSVGRFDDNFVEQRRAALEKMLRKIANHPVLQKDPDFRLFLES 111 (112)
T ss_pred -C--------CCccCC---CCC-cccccCCCHHHHHHHHHHHHHHHHHHHCCcccccCcHHHHhcCC
Confidence 0 011233 332 2334443 67777778999999999999999999999999975
No 60
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=98.59 E-value=1.8e-07 Score=91.25 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=71.4
Q ss_pred eEEeeeeccCCCCCCCceeEEEEEEEee----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccc
Q 001225 58 ATIVAVSRPDSSDISPMLLSYTIELQYK----QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQ 133 (1120)
Q Consensus 58 ~~I~~ver~~s~~~~~~~~~YtIeL~hG----~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~ 133 (1120)
+.|+++.....+. ..+++|.|++... .-.|.|.|||+||..||.+|+. . +
T Consensus 3 ~~i~~~~~~~~~~--~~yv~Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~~L~~-----~-------------------~ 56 (112)
T cd07279 3 FEIVSARTVKEGE--KKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRK-----Q-------------------H 56 (112)
T ss_pred EEeccCeEEcCCC--eeEEEEEEEEEECCCCCCceEEEecchHhHHHHHHHHHH-----H-------------------C
Confidence 3455554443332 2478999999864 3579999999999999998874 1 0
Q ss_pred cccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 134 VAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
|. .. ..|+ +|. |..+|+. .+.++|+..||+||+.|+..+.+.++..+.+||.
T Consensus 57 ---------------p~----~~---~~~~---lP~-K~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 110 (112)
T cd07279 57 ---------------PQ----LM---AKVS---FPR-KVLMGNFSSELIAERSRAFEQFLGHILSIPNLRDSKAFLDFLQ 110 (112)
T ss_pred ---------------CC----cC---CCCC---CCC-CeecccCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhC
Confidence 00 00 0012 332 3344543 6777777899999999999999999999999997
Q ss_pred e
Q 001225 212 V 212 (1120)
Q Consensus 212 v 212 (1120)
.
T Consensus 111 ~ 111 (112)
T cd07279 111 G 111 (112)
T ss_pred C
Confidence 4
No 61
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=98.59 E-value=3.4e-07 Score=90.32 Aligned_cols=111 Identities=14% Similarity=0.244 Sum_probs=77.1
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEee-eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYK-QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVA 135 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG-~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 135 (1120)
.|+|+++|+--... ...+|.|+++-- .-.|.|.|+|+||..||.+|+. . .|....
T Consensus 3 ~~~v~~~ekr~~~~---k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~-----~--------------FP~eag-- 58 (119)
T cd06888 3 DVKVIDVEKRRAPS---KHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLD-----K--------------FPIEGG-- 58 (119)
T ss_pred eEEEEEEEEEecCC---CcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHH-----h--------------Cchhhc--
Confidence 68899999632211 257999999982 2479999999999999998874 1 111000
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc---cHHHHHHHHHHHHHHHHHhhccc-ccchhccccce
Q 001225 136 VVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ---TVAERAKVAMQGYLNHFMGNIDI-VNSREVCKFLE 211 (1120)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~---~~~~rrr~~LE~YL~~LL~~~~~-~~~~~l~~FLE 211 (1120)
......|.+|. ||- +..+|+. .++++|+..|++||++|+..+.. ..+..+..||+
T Consensus 59 -----------------~~~~~~r~lP~---lP~-k~~~g~s~~~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~ 117 (119)
T cd06888 59 -----------------QKDPSQRIIPF---LPG-KILFRRSHIRDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFE 117 (119)
T ss_pred -----------------cCCCCccccCC---CCC-CcccCcchhHHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcC
Confidence 00123455666 552 2345543 58888889999999999988765 58999999997
Q ss_pred e
Q 001225 212 V 212 (1120)
Q Consensus 212 v 212 (1120)
.
T Consensus 118 p 118 (119)
T cd06888 118 A 118 (119)
T ss_pred C
Confidence 5
No 62
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=98.57 E-value=2.7e-07 Score=91.90 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=66.4
Q ss_pred ceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCCC
Q 001225 74 MLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHPS 153 (1120)
Q Consensus 74 ~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1120)
.+++|.|..+. -.|.|.|||+||..||.+|.. . + |
T Consensus 19 ~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~-----~-------------------~---------------p---- 53 (125)
T cd06862 19 SFIAYQITPTH--TNVTVSRRYKHFDWLYERLVE-----K-------------------Y---------------S---- 53 (125)
T ss_pred CEEEEEEEEec--CcEEEEEecHHHHHHHHHHHH-----H-------------------C---------------C----
Confidence 47899999876 579999999999999998774 1 0 0
Q ss_pred ccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceecc
Q 001225 154 ESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSR 214 (1120)
Q Consensus 154 ~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~ 214 (1120)
...+|+ ||. |..+++. .+.+.|+++||+||+.|+..+.+.++..+..||+.+.
T Consensus 54 ----~~~iPp---lP~-K~~~~~~~~~fie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~ 108 (125)
T cd06862 54 ----CIAIPP---LPE-KQVTGRFEEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFLTCTD 108 (125)
T ss_pred ----CCCCCC---CCC-CccccCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCcc
Confidence 012333 332 2233432 6777777899999999999999999999999999874
No 63
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=98.56 E-value=3.1e-07 Score=90.60 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=37.0
Q ss_pred eEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHH
Q 001225 58 ATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKK 107 (1120)
Q Consensus 58 ~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~ 107 (1120)
|.|.++.....+ ....++|.|+++.+.-.|+|.|||+||..||.+|+.
T Consensus 3 v~IPs~~~~g~~--~~~y~vY~I~v~~~~~~w~V~RRYseF~~L~~~L~~ 50 (118)
T cd07277 3 VWIPSVFLRGKG--SDAHHVYQVYIRIRDDEWNVYRRYSEFYELHKKLKK 50 (118)
T ss_pred EEcCcEEEecCC--CCCEEEEEEEEEECCCEEEEEecHHHHHHHHHHHHH
Confidence 455555432111 234789999999999999999999999999998885
No 64
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=98.56 E-value=2.7e-07 Score=90.48 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=64.9
Q ss_pred eeEEEEEE-Eeeee---EEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCC
Q 001225 75 LLSYTIEL-QYKQF---KWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPM 150 (1120)
Q Consensus 75 ~~~YtIeL-~hG~f---kWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1120)
+++|+|.+ +.|.| .|+|.|||+||..||..|+. . + +.
T Consensus 18 yv~Y~i~~~~~g~~~~~~~~v~RRYSdF~~L~~~L~~-----~----------~----~~-------------------- 58 (114)
T cd07300 18 HVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQELLS-----D----------F----SE-------------------- 58 (114)
T ss_pred eEEEEEEEEEecCccCceEEEEeccHhHHHHHHHHHH-----H----------c----cc--------------------
Confidence 68999976 56866 89999999999999997764 1 0 00
Q ss_pred CCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceec
Q 001225 151 HPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVS 213 (1120)
Q Consensus 151 ~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS 213 (1120)
... .|+ +|. |..+|+. .+.++|+.+||.||+.|+..+.++++..+.+||+..
T Consensus 59 ----~~~---~~~---lP~-K~~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 59 ----ELE---DVV---FPK-KKLTGNFSEEIIAERRVALRDYLTLLYSLRFVRRSQAFQDFLTHP 112 (114)
T ss_pred ----cCC---CCC---CCC-CcccCCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCc
Confidence 000 011 231 2334443 677777789999999999999999999999999864
No 65
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=98.56 E-value=3.7e-07 Score=91.11 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=37.6
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHH
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKK 107 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~ 107 (1120)
++.|.++.....+. ..+++|.|+++.+..+|+|.|||+||..||.+|+.
T Consensus 2 ~i~Ip~~~~~~~~~--~~y~vY~I~v~~~~~~w~V~RRYseF~~Lh~~L~~ 50 (127)
T cd06874 2 KITIPRYVLRGQGK--DEHFEFEVKITVLDETWTVFRRYSRFRELHKTMKL 50 (127)
T ss_pred EEEECCeEEecCCC--CcEEEEEEEEEECCcEEEEEeeHHHHHHHHHHHHH
Confidence 35566654322222 23789999999999999999999999999998874
No 66
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=98.55 E-value=2.6e-07 Score=90.11 Aligned_cols=99 Identities=21% Similarity=0.276 Sum_probs=67.1
Q ss_pred eEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccc
Q 001225 58 ATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVV 137 (1120)
Q Consensus 58 ~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1120)
++|++..+...+. ...+++|+|+++- |+|.|||+||..||.+|+. . +
T Consensus 2 ~~i~~~~~~~~~~-~~~y~~Y~I~~~~----~~V~RRYsdF~~L~~~L~~-----~-------------------~---- 48 (112)
T cd06867 2 IQIVDAGKSSEGG-SGSYIVYVIRLGG----SEVKRRYSEFESLRKNLTR-----L-------------------Y---- 48 (112)
T ss_pred cEEccCccccCCC-ccCEEEEEEEeee----EEEEeccHHHHHHHHHHHH-----H-------------------C----
Confidence 4566666543221 1247899999763 9999999999999998874 1 0
Q ss_pred cCCCCCCCCCCCCCCCccccccCCCCcccccccccc---------ccc--ccHHHHHHHHHHHHHHHHHhhcccccchhc
Q 001225 138 QDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPV---------LGK--QTVAERAKVAMQGYLNHFMGNIDIVNSREV 206 (1120)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~---------l~~--~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l 206 (1120)
| ...+|+ ||. |.. .++ ..+.++|++.||.||+.|+..+.+.++..+
T Consensus 49 -----------p--------~~~iPp---lP~-K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~ 105 (112)
T cd06867 49 -----------P--------TLIIPP---IPE-KHSLKDYAKKPSKAKNDAKIIERRKRMLQRFLNRCLQHPILRNDIVF 105 (112)
T ss_pred -----------c--------CCCcCC---CCC-cchhhhhccccccccCcHHHHHHHHHHHHHHHHHHhcChhhccCcHH
Confidence 0 001222 221 010 112 156677778999999999999999999999
Q ss_pred ccccee
Q 001225 207 CKFLEV 212 (1120)
Q Consensus 207 ~~FLEv 212 (1120)
.+||+.
T Consensus 106 ~~FL~~ 111 (112)
T cd06867 106 QKFLDP 111 (112)
T ss_pred HHhcCC
Confidence 999974
No 67
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=98.54 E-value=4.2e-07 Score=88.11 Aligned_cols=99 Identities=16% Similarity=0.327 Sum_probs=71.6
Q ss_pred ceEEeeee-ccCCCCCCCceeEEEEEEEeee---eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccc
Q 001225 57 KATIVAVS-RPDSSDISPMLLSYTIELQYKQ---FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVD 132 (1120)
Q Consensus 57 ~~~I~~ve-r~~s~~~~~~~~~YtIeL~hG~---fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~ 132 (1120)
.|+|++++ |..... ..+|.|+++... =.| |+|+|++|..||.+|+. .+|+
T Consensus 1 ~~~V~~f~Kr~~p~k----~yvY~i~V~~~~~~~~~~-I~Rry~eF~~Lh~kL~~-------------------~Fp~-- 54 (109)
T cd07289 1 EVSVFTYHKRYNPDK----HYIYVVRILREGQIEPSF-VFRTFDEFQELHNKLSI-------------------LFPL-- 54 (109)
T ss_pred CcEEeeEEEEEcCCC----eEEEEEEEEECCCceeEE-EEeeHHHHHHHHHHHHH-------------------HCCc--
Confidence 47899998 443221 369999999943 277 99999999999998885 1110
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc---cHHHHHHHHHHHHHHHHHhhcc-cccchhccc
Q 001225 133 QVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ---TVAERAKVAMQGYLNHFMGNID-IVNSREVCK 208 (1120)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~---~~~~rrr~~LE~YL~~LL~~~~-~~~~~~l~~ 208 (1120)
..+|+ ||. +..+|+. .++++|+..||+||+.||..+. +..+..+..
T Consensus 55 --------------------------~~lP~---lP~-k~~~grs~~~~vae~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~ 104 (109)
T cd07289 55 --------------------------WKLPG---FPN-KMVLGRTHIKDVAAKRKVELNSYIQSLMNSSTEVAECDLVYT 104 (109)
T ss_pred --------------------------ccCCC---CCC-CeeeCCCcchHHHHHHHHHHHHHHHHHHcCChhhhcChHHHH
Confidence 12444 442 2335543 6788888999999999998765 578999999
Q ss_pred cce
Q 001225 209 FLE 211 (1120)
Q Consensus 209 FLE 211 (1120)
||+
T Consensus 105 FF~ 107 (109)
T cd07289 105 FFH 107 (109)
T ss_pred hcc
Confidence 986
No 68
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.53 E-value=6.2e-07 Score=103.06 Aligned_cols=149 Identities=18% Similarity=0.345 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEE--cccchhhhhhcchhhHHH
Q 001225 385 AAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILL--YKEVSIALKINSMYSKKR 462 (1120)
Q Consensus 385 ~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILv--yd~~~~al~~~s~~~k~~ 462 (1120)
.-.+||...|..|++.|+|+-....|.+--..| ..-|.||++|.+||-|||+||+|+ |++....+ + .|. +.
T Consensus 276 ~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~---~~fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~m-~--~~L-~S 348 (456)
T KOG3603|consen 276 WDLEAILNTIDEAQKFVYISVMDYFPSTIYSKN---HRFWEIDDAIRRAAVRGVKVRLLVSCWKHSEPSM-F--RFL-RS 348 (456)
T ss_pred hhHHHHHHHHHHHhhheeeeehhccchheeecC---cchhhhhHHHHHHhhcceEEEEEEeccCCCCchH-H--HHH-HH
Confidence 468999999999999999998888885433343 455799999999999999999998 33322211 0 111 23
Q ss_pred HHcc-----cCCeEEEEc--CCC-CCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCCCC
Q 001225 463 LLKI-----HENVKVLRH--PDH-VSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDYYN 534 (1120)
Q Consensus 463 L~~~-----~~nI~V~r~--P~~-~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY~n 534 (1120)
|..+ +.+|+|..+ |.. ....++...+|.|.+|-+ +.||+|.-|++ -||+-
T Consensus 349 Lq~l~~~~~~~~iqvk~f~VP~~~~~~ip~~Rv~HnKymVTe-~aayIGTSNws---------------------~dYf~ 406 (456)
T KOG3603|consen 349 LQDLSDPLENGSIQVKFFIVPQTNIEKIPFARVNHNKYMVTE-SAAYIGTSNWS---------------------GDYFT 406 (456)
T ss_pred HHHhcCccccCceEEEEEEeCCCccccCchhhhccceeEEee-cceeeeccCCC---------------------cccee
Confidence 3322 356777666 532 233456678999999988 69999999985 35653
Q ss_pred CCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEE-----eChHHHHHHHHHHHHHHhh
Q 001225 535 PRESEPNSWEDTMKDELEREKYPRMPWHDVHCAL-----WGPPCRDIARHFVQRWNHA 587 (1120)
Q Consensus 535 ~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v-----~Gpaa~dl~~~F~qrWn~~ 587 (1120)
.. . -+++.| .|+++.+|..+|..+|+..
T Consensus 407 ~T-------------------a------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~ 439 (456)
T KOG3603|consen 407 ST-------------------A------GTAIVVRQTPHKGTLVSQLKAVFERDWNST 439 (456)
T ss_pred cc-------------------C------ceEEEEecCCCCCcHHHHHHHHHhhccccc
Confidence 11 0 123333 3689999999999999865
No 69
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=98.52 E-value=3.7e-07 Score=90.23 Aligned_cols=89 Identities=21% Similarity=0.352 Sum_probs=65.9
Q ss_pred CceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCC
Q 001225 73 PMLLSYTIELQYK-----QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGA 147 (1120)
Q Consensus 73 ~~~~~YtIeL~hG-----~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1120)
..+++|+|+.+.+ .-.|+|.|||+||..||.+|+. . +
T Consensus 21 ~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~-----~-------------------~-------------- 62 (120)
T cd06865 21 PPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAE-----A-------------------Y-------------- 62 (120)
T ss_pred CCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHH-----H-------------------C--------------
Confidence 3589999998876 3689999999999999998874 1 0
Q ss_pred CCCCCCccccccCCCCcccccccccccc-----cccHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 148 VPMHPSESVRNRYVPSMAALSILRPVLG-----KQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 148 ~~~~~~~~~~~r~~Ps~~~lp~~r~~l~-----~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
..-.+|+ ||. |..++ +..+.+.|+++||.||+.|+.++.+.++..+..||+.
T Consensus 63 ---------p~~~iPp---lP~-K~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 63 ---------RGAFVPP---RPD-KSVVESQVMQSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred ---------CCCeeCC---CcC-CccccccccCCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 0011233 331 11111 2267777888999999999999999999999999974
No 70
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=98.52 E-value=3.4e-07 Score=90.15 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=71.0
Q ss_pred eEEeeeeccCCCCCCCceeEEEEEEEeee-------eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccc
Q 001225 58 ATIVAVSRPDSSDISPMLLSYTIELQYKQ-------FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGI 130 (1120)
Q Consensus 58 ~~I~~ver~~s~~~~~~~~~YtIeL~hG~-------fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~ 130 (1120)
+.|.+.++..+ ..++|.|.+..+. =.|+|.|||+||..||.+|+.. ++...
T Consensus 5 ~~V~d~~~~~~-----~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~------------~~~~~----- 62 (117)
T cd06881 5 FTVTDTRRHKK-----GYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRL------------HKQLY----- 62 (117)
T ss_pred EEecCcceecC-----ceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHH------------hhhcc-----
Confidence 45555555422 3789999998522 2899999999999999988741 00000
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccc
Q 001225 131 VDQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCK 208 (1120)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~ 208 (1120)
....+|+ ||. +..+|+. .+.++|+.+||+||+.++..+.++++..+.+
T Consensus 63 --------------------------~~~~~P~---lP~-K~~~g~~~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~ 112 (117)
T cd06881 63 --------------------------LSGSFPP---FPK-GKYFGRFDAAVIEERRQAILELLDFVGNHPALYQSSAFQQ 112 (117)
T ss_pred --------------------------ccCcCCC---CCC-CcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHH
Confidence 0011233 332 3345543 6777777899999999999999999999999
Q ss_pred cce
Q 001225 209 FLE 211 (1120)
Q Consensus 209 FLE 211 (1120)
|||
T Consensus 113 Fl~ 115 (117)
T cd06881 113 FFE 115 (117)
T ss_pred Hhc
Confidence 997
No 71
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=98.51 E-value=3.9e-07 Score=88.90 Aligned_cols=101 Identities=16% Similarity=0.322 Sum_probs=70.0
Q ss_pred eEEeeeeccCCCCCCCceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccc
Q 001225 58 ATIVAVSRPDSSDISPMLLSYTIELQYK-----QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVD 132 (1120)
Q Consensus 58 ~~I~~ver~~s~~~~~~~~~YtIeL~hG-----~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~ 132 (1120)
+.|.+.++.-++. ..+++|+|+++-+ .-.|.|.|||+||..||.+|+. .
T Consensus 3 ~~V~~p~~~~~~~--~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~-----~------------------- 56 (114)
T cd06859 3 ISVTDPVKVGDGM--SAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVE-----K------------------- 56 (114)
T ss_pred EEEeCcceecCCc--cCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHH-----H-------------------
Confidence 4455555432222 3478999999863 3579999999999999998874 1
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--c--HHHHHHHHHHHHHHHHHhhcccccchhccc
Q 001225 133 QVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--T--VAERAKVAMQGYLNHFMGNIDIVNSREVCK 208 (1120)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~--~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~ 208 (1120)
+ | ...+|+ ||. +..+++. . +.+.|+++||.||+.|+..+.+..+.++..
T Consensus 57 ~---------------~--------~~~~P~---lP~-k~~~~~~~~~~~~ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~ 109 (114)
T cd06859 57 Y---------------P--------GRIVPP---PPE-KQAVGRFKVKFEFIEKRRAALERFLRRIAAHPVLRKDPDFRL 109 (114)
T ss_pred C---------------C--------CCEeCC---CCC-CcccCccCccHHHHHHHHHHHHHHHHHHhcChhhccCcHHHh
Confidence 0 0 012333 332 2234432 2 666777899999999999999999999999
Q ss_pred cce
Q 001225 209 FLE 211 (1120)
Q Consensus 209 FLE 211 (1120)
||+
T Consensus 110 Fl~ 112 (114)
T cd06859 110 FLE 112 (114)
T ss_pred hcC
Confidence 996
No 72
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=98.50 E-value=4.6e-07 Score=90.75 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=71.0
Q ss_pred eEEeeeeccCCCCC---CCceeEEEEEEEee---------eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 001225 58 ATIVAVSRPDSSDI---SPMLLSYTIELQYK---------QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWL 125 (1120)
Q Consensus 58 ~~I~~ver~~s~~~---~~~~~~YtIeL~hG---------~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~ 125 (1120)
+.|.+.|+...+.. ...+++|+|+.+-. .-.|+|.|||+||..||.+|.. . ++.
T Consensus 3 i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~-----~-------~p~-- 68 (129)
T cd06864 3 ITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVV-----T-------YPY-- 68 (129)
T ss_pred eEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHH-----H-------CCC--
Confidence 56777776544322 33479999999853 3478899999999999998874 1 000
Q ss_pred hhcccccccccccCCCCCCCCCCCCCCCccccccCCCCccccccc------cc-cccc--ccHHHHHHHHHHHHHHHHHh
Q 001225 126 QSIGIVDQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSIL------RP-VLGK--QTVAERAKVAMQGYLNHFMG 196 (1120)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~------r~-~l~~--~~~~~rrr~~LE~YL~~LL~ 196 (1120)
..+|+ ||.- +. ..++ ..+.++||++||.||+.++.
T Consensus 69 ---------------------------------~~iPp---lP~K~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~ 112 (129)
T cd06864 69 ---------------------------------VIVPP---LPEKRAMFMWQKLSSDTFDPDFVERRRAGLENFLLRVAG 112 (129)
T ss_pred ---------------------------------CCCCC---CCCcceecccccccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 01122 2210 00 0111 26777777899999999999
Q ss_pred hcccccchhccccce
Q 001225 197 NIDIVNSREVCKFLE 211 (1120)
Q Consensus 197 ~~~~~~~~~l~~FLE 211 (1120)
.+.+.++..+..||.
T Consensus 113 ~p~l~~s~~l~~FL~ 127 (129)
T cd06864 113 HPELCQDKIFLEFLT 127 (129)
T ss_pred ChhhhcCcHHHHhcC
Confidence 999999999999986
No 73
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.47 E-value=1.3e-06 Score=83.53 Aligned_cols=96 Identities=15% Similarity=0.250 Sum_probs=70.5
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeee
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYL 304 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~ 304 (1120)
.|+|||.|+.+ - ...|++||||+++++|.|.++..+..+..+|.+.. ..+..
T Consensus 3 ~k~G~L~Kkg~---------------~----~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~---------~~v~~ 54 (100)
T cd01233 3 SKKGYLNFPEE---------------T----NSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLST---------ARVEH 54 (100)
T ss_pred ceeEEEEeeCC---------------C----CCCcEEEEEEEECCEEEEEccCCCccEeeEEEecc---------cEEEE
Confidence 38999998731 0 15799999999999999999877777877777652 12221
Q ss_pred cccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 305 ASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 305 ~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
...........+.|.|..++|++.+.|.|..++.+|+.+|+...
T Consensus 55 ~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 55 SEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred ccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 11100011235789999999999999999999999999997653
No 74
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=98.46 E-value=6.3e-07 Score=87.76 Aligned_cols=88 Identities=17% Similarity=0.295 Sum_probs=65.1
Q ss_pred ceeEEEEEEEeee-----eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCC
Q 001225 74 MLLSYTIELQYKQ-----FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAV 148 (1120)
Q Consensus 74 ~~~~YtIeL~hG~-----fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1120)
.+++|+|.++.+. -.|+|.|||+||..||.+|.. . +
T Consensus 17 ~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~-----~-------------------~--------------- 57 (113)
T cd06898 17 SYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQK-----N-------------------A--------------- 57 (113)
T ss_pred CeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHH-----H-------------------C---------------
Confidence 5899999988653 478999999999999998774 1 0
Q ss_pred CCCCCccccccCCCCccccccccccccc---ccHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 149 PMHPSESVRNRYVPSMAALSILRPVLGK---QTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 149 ~~~~~~~~~~r~~Ps~~~lp~~r~~l~~---~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
| ...+|+ ||. |..+++ ..+.++||++||.||+.++.++.+.++..+..||+.
T Consensus 58 ~--------~~~~p~---lP~-K~~~~~~~~~~fie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 58 L--------LIQLPS---LPP-KNLFGRFNNEGFIEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred C--------CCcCCC---CCC-CccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 0 001233 332 222332 367777778999999999999999999999999975
No 75
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=98.45 E-value=7e-07 Score=86.31 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=63.8
Q ss_pred ceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCCC
Q 001225 74 MLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHPS 153 (1120)
Q Consensus 74 ~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1120)
..++|.|+.+- ..|+|.|||+||..||.+|+. . + |
T Consensus 17 ~y~~Y~i~~~~--~~~~V~RRYsdF~~L~~~L~~-----~-------------------~---------------p---- 51 (105)
T cd06866 17 KHVEYEVSSKR--FKSTVYRRYSDFVWLHEYLLK-----R-------------------Y---------------P---- 51 (105)
T ss_pred CCEEEEEEEec--CCEEEEEEhHHHHHHHHHHHH-----H-------------------C---------------C----
Confidence 46899999763 579999999999999998874 1 0 0
Q ss_pred ccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 154 ESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 154 ~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
...+|+ ||. |..+++. .+.+.|++.||+||+.|+..+.+.++..+..||..
T Consensus 52 ----~~~iP~---lP~-K~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 52 ----YRMVPA---LPP-KRIGGSADREFLEARRRGLSRFLNLVARHPVLSEDELVRTFLTE 104 (105)
T ss_pred ----CCcCCC---CCC-CccccCCCHHHHHHHHHHHHHHHHHHhcChhhccChHHHhhcCC
Confidence 012233 332 2334432 66777778999999999999999999999999864
No 76
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.45 E-value=1.2e-06 Score=84.70 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=68.0
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCC--CceeEEEEEecCCCCCCCCCCCee
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYN--TRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~--~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
|||||.||+.++. ..+...|++||||++++.|.|++++.+ +.++.+|-+..-. .+.
T Consensus 2 k~g~l~Kr~~~~~--------------~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~--------~ve 59 (106)
T cd01238 2 LESILVKRSQQKK--------------KTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIK--------CVE 59 (106)
T ss_pred cceeeeeeccCCC--------------CCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcce--------EEE
Confidence 8999999853211 123358999999999999999987765 3566666554310 011
Q ss_pred ecccccC---CCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHh
Q 001225 304 LASQVKG---SNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAIND 346 (1120)
Q Consensus 304 ~~~~~~~---~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~ 346 (1120)
....... .-...+.|.|....|.+.+.|.|..+..+|+.+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 60 TVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 0000000 001357899999999999999999999999999975
No 77
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=98.44 E-value=7.2e-07 Score=88.26 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=64.0
Q ss_pred ceeEEEEEEEee--e-----------eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCC
Q 001225 74 MLLSYTIELQYK--Q-----------FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDD 140 (1120)
Q Consensus 74 ~~~~YtIeL~hG--~-----------fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (1120)
..++|+|.+.-. . -.|+|.|||+||..||..|+. . +
T Consensus 19 ~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~-----~-------------------~------- 67 (120)
T cd06868 19 GHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSE-----K-------------------Y------- 67 (120)
T ss_pred CeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHH-----H-------------------C-------
Confidence 378999986531 1 269999999999999998874 1 1
Q ss_pred CCCCCCCCCCCCCccccccCCCCcccccccccccccccHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 141 DEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
| ...+|+ ||. |..++...+.++|+.+||+||+.++..+.++++..+..||.+
T Consensus 68 --------p--------~~~iPp---lP~-K~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 68 --------P--------GTILPP---LPR-KALFVSESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGV 119 (120)
T ss_pred --------C--------CCCCCC---CCC-CcccCCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence 0 011233 442 223334466777778999999999999999999999999975
No 78
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=98.44 E-value=1e-06 Score=86.77 Aligned_cols=90 Identities=22% Similarity=0.358 Sum_probs=63.6
Q ss_pred ceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCC
Q 001225 74 MLLSYTIELQYK-----QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAV 148 (1120)
Q Consensus 74 ~~~~YtIeL~hG-----~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1120)
.++.|+|+++-. .-.|+|.|||+||..||.+|.. . +
T Consensus 18 ~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~-----~-------------------~--------------- 58 (118)
T cd06863 18 TYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSN-----D-------------------F--------------- 58 (118)
T ss_pred CEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHH-----H-------------------C---------------
Confidence 478999998642 2479999999999999998874 1 0
Q ss_pred CCCCCccccccCCCCcccccc---cccccc---cccHHHHHHHHHHHHHHHHHhhcccccchhccccceec
Q 001225 149 PMHPSESVRNRYVPSMAALSI---LRPVLG---KQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVS 213 (1120)
Q Consensus 149 ~~~~~~~~~~r~~Ps~~~lp~---~r~~l~---~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS 213 (1120)
| ...+|+ ||. +....+ ...+.++|+++||.||+.++..+.++++..+..||+-|
T Consensus 59 p--------~~~iPp---lP~K~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s~ 118 (118)
T cd06863 59 P--------ACVVPP---LPDKHRLEYITGDRFSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLESS 118 (118)
T ss_pred c--------CCcCCC---CCCccccccccccCCCHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCCC
Confidence 0 011233 221 000011 12566677789999999999999999999999999764
No 79
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=98.44 E-value=7.6e-07 Score=87.60 Aligned_cols=89 Identities=19% Similarity=0.303 Sum_probs=64.1
Q ss_pred ceeEEEEEEE-----eeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCC
Q 001225 74 MLLSYTIELQ-----YKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAV 148 (1120)
Q Consensus 74 ~~~~YtIeL~-----hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1120)
.++.|+|..+ ++.-.|+|.|||+||..||.+|+. . +
T Consensus 18 ~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~-----~-------------------~--------------- 58 (116)
T cd07295 18 MFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILER-----E-------------------S--------------- 58 (116)
T ss_pred CEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHH-----H-------------------C---------------
Confidence 4789999876 344579999999999999998874 1 0
Q ss_pred CCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccc-cchhccccceec
Q 001225 149 PMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIV-NSREVCKFLEVS 213 (1120)
Q Consensus 149 ~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~-~~~~l~~FLEvS 213 (1120)
....+|+ ||. |...++. .+.++|+.+||.||+.++..+.++ ++..+.+||+..
T Consensus 59 --------~~~~iPp---lP~-K~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~ 114 (116)
T cd07295 59 --------PRVMIPP---LPG-KIFTNRFSDEVIEERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDP 114 (116)
T ss_pred --------CCCccCC---CCC-CccccCCCHHHHHHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCC
Confidence 0012344 342 1112322 677777789999999999988887 688999999864
No 80
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=98.42 E-value=1.1e-06 Score=86.53 Aligned_cols=89 Identities=13% Similarity=0.287 Sum_probs=64.1
Q ss_pred CceeEEEEEEEe-----eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCC
Q 001225 73 PMLLSYTIELQY-----KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGA 147 (1120)
Q Consensus 73 ~~~~~YtIeL~h-----G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1120)
..+++|+|..+. +.-.|.|.|||+||..||.+|.. . +
T Consensus 16 ~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~-----~-------------------~-------------- 57 (116)
T cd06860 16 ETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEE-----S-------------------H-------------- 57 (116)
T ss_pred cCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHH-----H-------------------C--------------
Confidence 358999998875 34599999999999999998774 1 0
Q ss_pred CCCCCCccccccCCCCcccccccc---ccccc--ccHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 148 VPMHPSESVRNRYVPSMAALSILR---PVLGK--QTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 148 ~~~~~~~~~~~r~~Ps~~~lp~~r---~~l~~--~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
....+|+ ||.-+ ..+++ ..+.+.|++.||.||+.++..+.+.++..+..||.
T Consensus 58 ---------p~~~iPp---LP~K~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt 114 (116)
T cd06860 58 ---------PTHIIPP---LPEKHSVKGLLDRFSPEFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLT 114 (116)
T ss_pred ---------CCCccCC---CCCcchhhhhcccCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhc
Confidence 0012344 33211 11222 25667777899999999999999999999999985
No 81
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=98.42 E-value=9.3e-07 Score=87.96 Aligned_cols=95 Identities=18% Similarity=0.349 Sum_probs=64.3
Q ss_pred ceeEEEEEEEe-----eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCC
Q 001225 74 MLLSYTIELQY-----KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAV 148 (1120)
Q Consensus 74 ~~~~YtIeL~h-----G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1120)
.+++|+|+.+. +.=.|+|.|||+||..||.+|+.+ +. +
T Consensus 17 ~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~---------------~~-------~--------------- 59 (124)
T cd07282 17 AYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASK---------------YL-------H--------------- 59 (124)
T ss_pred CeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHh---------------CC-------C---------------
Confidence 47999998863 224799999999999999988741 00 0
Q ss_pred CCCCCccccccCCCCcc--------cccccccccccccHHHHHHHHHHHHHHHHHhhcccccchhccccceec
Q 001225 149 PMHPSESVRNRYVPSMA--------ALSILRPVLGKQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVS 213 (1120)
Q Consensus 149 ~~~~~~~~~~r~~Ps~~--------~lp~~r~~l~~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS 213 (1120)
....+|+.+ .+++.+.......+.++|+..||.||+.|+..+.++++..+..||+.|
T Consensus 60 --------~g~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 124 (124)
T cd07282 60 --------VGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESS 124 (124)
T ss_pred --------CCceeCCCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcCC
Confidence 000012200 011111111123677888899999999999999999999999999965
No 82
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=98.39 E-value=1.2e-06 Score=85.57 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=62.8
Q ss_pred ceeEEEEEEE----eeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCC
Q 001225 74 MLLSYTIELQ----YKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVP 149 (1120)
Q Consensus 74 ~~~~YtIeL~----hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1120)
.+++|+|.+. ++.-.|.|.|||+||..||..|+. . .|.
T Consensus 17 ~yv~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~-----~--------------~~~------------------- 58 (112)
T cd07301 17 KYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRR-----L--------------FGG------------------- 58 (112)
T ss_pred CEEEEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHH-----H--------------CCC-------------------
Confidence 4789999985 344579999999999999998874 1 000
Q ss_pred CCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 150 MHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 150 ~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
.+|. ..+|. |..+++. .+.++|+.+||+||+.++..+.++++..+.+||.+
T Consensus 59 ----------~~~~-~~~P~-K~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l 111 (112)
T cd07301 59 ----------EMAG-VSFPR-KRLRKNFTAETIAKRSRAFEQFLCHLHSLPELRASPAFLEFFYL 111 (112)
T ss_pred ----------cCCC-CCCCC-CcccCCCCHHHHHHHHHHHHHHHHHHhcCHHHhcChHHHHHhCC
Confidence 0000 01221 2223332 66777778999999999999999999999999854
No 83
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=98.38 E-value=1.1e-06 Score=84.86 Aligned_cols=85 Identities=25% Similarity=0.338 Sum_probs=60.9
Q ss_pred ceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCCC
Q 001225 74 MLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHPS 153 (1120)
Q Consensus 74 ~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1120)
.+++|+|+++ |. |.+.|||+||..||.+|+. . .|
T Consensus 17 ~y~~Y~I~v~-~~--~~~~rRYseF~~L~~~L~~-----~--------------~~------------------------ 50 (104)
T cd06885 17 TYVAYNIHIN-GV--LHCSVRYSQLHGLNEQLKK-----E--------------FG------------------------ 50 (104)
T ss_pred cEEEEEEEEC-Cc--EEEEechHHHHHHHHHHHH-----H--------------cC------------------------
Confidence 4789999986 65 6677899999999998874 1 00
Q ss_pred ccccccCCCCccccccccccccc-ccHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 154 ESVRNRYVPSMAALSILRPVLGK-QTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 154 ~~~~~r~~Ps~~~lp~~r~~l~~-~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
...+|+ ||. |..++. ..+.++||.+||.||+.|+..+.++.+..+.+||..
T Consensus 51 ----~~~~p~---lP~-K~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 51 ----NRKLPP---FPP-KKLLPLTPAQLEERRLQLEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred ----CCCCCC---CCC-CccccCCHHHHHHHHHHHHHHHHHHhcChhhccCHHHHHHHHh
Confidence 001222 331 122221 266677778999999999999999999999999863
No 84
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.36 E-value=3.5e-06 Score=79.49 Aligned_cols=93 Identities=18% Similarity=0.315 Sum_probs=71.2
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeec
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLA 305 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~ 305 (1120)
.||+|.++... + +.-...|++|||||+++.|.|.+++.+..+..+|.+.. ..+...
T Consensus 2 ~~GwL~kk~~~---~------------g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~---------~~v~~~ 57 (96)
T cd01260 2 CDGWLWKRKKP---G------------GFMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSG---------FTIESA 57 (96)
T ss_pred ceeEEEEecCC---C------------CccccCceeEEEEEECCEEEEECCCCCCccceEEEccC---------CEEEEc
Confidence 69999987421 0 11125899999999999999999998888988887763 123222
Q ss_pred ccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHh
Q 001225 306 SQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAIND 346 (1120)
Q Consensus 306 ~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~ 346 (1120)
. + ....+.|.|...+ |.+.|.|.|...+.+|+.+|..
T Consensus 58 ~---~-~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 58 K---E-VKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred h---h-cCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 1 1 1256889998777 9999999999999999999975
No 85
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=98.33 E-value=2.2e-06 Score=84.61 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=65.5
Q ss_pred eeEEEEEEEeee-------eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCC
Q 001225 75 LLSYTIELQYKQ-------FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGA 147 (1120)
Q Consensus 75 ~~~YtIeL~hG~-------fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1120)
+++|.|+.+.+. -.|+|.|||+||..||..|+. . ++...
T Consensus 17 yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~-----~-------~~~~~---------------------- 62 (118)
T cd07287 17 YTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQ-----I-------HKNLC---------------------- 62 (118)
T ss_pred eEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHH-----h-------ccccc----------------------
Confidence 789999987654 379999999999999998874 1 11000
Q ss_pred CCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 148 VPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 148 ~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
.....+|+ +|. +..+|+. .+.++||.+||+||+.+...+.++++.++.+||+
T Consensus 63 --------~~~~~~Pp---~p~-k~~~g~~d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~ 116 (118)
T cd07287 63 --------RQSELFPP---FAK-AKVFGRFDESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFK 116 (118)
T ss_pred --------cCCcccCC---CCC-ceeecCCCHHHHHHHHHHHHHHHHHHhcCccccCChHHHHHhc
Confidence 00011233 331 2335543 7788888999999999998888899999999996
No 86
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=98.33 E-value=2.1e-06 Score=85.45 Aligned_cols=111 Identities=18% Similarity=0.309 Sum_probs=68.8
Q ss_pred eEEeeeeccCCCCCCCceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccc
Q 001225 58 ATIVAVSRPDSSDISPMLLSYTIELQYK-----QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVD 132 (1120)
Q Consensus 58 ~~I~~ver~~s~~~~~~~~~YtIeL~hG-----~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~ 132 (1120)
+.|.+.+....+. ..+++|+|..+-+ .=.|+|.|||+||..||.+|+.+. .. .|
T Consensus 3 i~V~~p~~~~~~~--~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~------------~~----~~--- 61 (124)
T cd07281 3 VSITDPEKIGDGM--NAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKH------------SQ----NG--- 61 (124)
T ss_pred EEEcCCeEeeCCc--CCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhC------------CC----CC---
Confidence 4454444432222 3479999998864 348999999999999999887400 00 00
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccc-----cccHHHHHHHHHHHHHHHHHhhcccccchhcc
Q 001225 133 QVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLG-----KQTVAERAKVAMQGYLNHFMGNIDIVNSREVC 207 (1120)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~-----~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~ 207 (1120)
..+|.. |+...+-..+-.++ ...+.++|+.+||.||+.|+..+.++++..+.
T Consensus 62 -------------~~iPp~----------P~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~ 118 (124)
T cd07281 62 -------------FIVPPP----------PEKSLIGMTKVKVGKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVR 118 (124)
T ss_pred -------------cEeCCC----------CCccccccchhhccccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHH
Confidence 001100 11000000000011 12677778899999999999999999999999
Q ss_pred cccee
Q 001225 208 KFLEV 212 (1120)
Q Consensus 208 ~FLEv 212 (1120)
.||+.
T Consensus 119 ~FL~~ 123 (124)
T cd07281 119 EFLEK 123 (124)
T ss_pred HHhCC
Confidence 99974
No 87
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=98.32 E-value=1.8e-06 Score=86.03 Aligned_cols=88 Identities=10% Similarity=0.185 Sum_probs=67.0
Q ss_pred ceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCCC
Q 001225 74 MLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHPS 153 (1120)
Q Consensus 74 ~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1120)
.+++|+|..+++. |.|.|||+||..||.+|.. . +
T Consensus 19 ~Yv~Y~I~~~~~~--~~V~RRYsDF~~L~~~L~~-----~-------------------~-------------------- 52 (127)
T cd07286 19 SYISYKLVPSHTG--LQVHRRYKHFDWLYARLAE-----K-------------------F-------------------- 52 (127)
T ss_pred CEEEEEEEEecCc--eEEECCCcHHHHHHHHHHH-----H-------------------C--------------------
Confidence 5899999987764 8999999999999987763 1 0
Q ss_pred ccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceecc
Q 001225 154 ESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSR 214 (1120)
Q Consensus 154 ~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~ 214 (1120)
....+|+ ||. +..+|+- .+.++|++.||.||+.++..+.+..+..+..||+.+.
T Consensus 53 ---p~~~IPp---LP~-K~~~g~f~~~FIe~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~~ 108 (127)
T cd07286 53 ---PVISVPH---IPE-KQATGRFEEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFLTCPS 108 (127)
T ss_pred ---CCcEeCC---CcC-CCcCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHHhcCCc
Confidence 0012344 442 2234443 7788888999999999999999999999999999874
No 88
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=98.31 E-value=2e-06 Score=86.48 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 178 TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 178 ~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
.+.++||.+||.||+.|+..+.+.++.++..||.+
T Consensus 97 ~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 97 DKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 67777889999999999999999999999999975
No 89
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.30 E-value=5.3e-07 Score=66.62 Aligned_cols=25 Identities=52% Similarity=0.876 Sum_probs=24.2
Q ss_pred eeeeeEEEEeccEEEEcccccccCC
Q 001225 919 YVHSKVMIIDDRAALIGSSNINDRS 943 (1120)
Q Consensus 919 yvHSKlmIVDD~~~iIGSANiN~RS 943 (1120)
+.|+|+||+|+++++|||+|++.||
T Consensus 4 ~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 4 VLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred cEEeEEEEEcCCEEEEeCccCCCCC
Confidence 7999999999999999999999987
No 90
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=98.28 E-value=2.5e-06 Score=84.77 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=63.9
Q ss_pred CceeEEEEEEEe-----eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCC
Q 001225 73 PMLLSYTIELQY-----KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGA 147 (1120)
Q Consensus 73 ~~~~~YtIeL~h-----G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1120)
..+++|.|..+- ..-.|+|.|||+||..||..|... .|
T Consensus 17 ~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-------------------~~------------------ 59 (123)
T cd06894 17 KRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-------------------SK------------------ 59 (123)
T ss_pred cCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-------------------CC------------------
Confidence 347899999873 345799999999999999877630 00
Q ss_pred CCCCCCccccccCCCCcccccc---c-----cccccc--ccHHHHHHHHHHHHHHHHHhhcccccchhccccceec
Q 001225 148 VPMHPSESVRNRYVPSMAALSI---L-----RPVLGK--QTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVS 213 (1120)
Q Consensus 148 ~~~~~~~~~~~r~~Ps~~~lp~---~-----r~~l~~--~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS 213 (1120)
..+|+ ||. + +...++ ..+.++|++.||.||+.++..+.++++..+..||+-.
T Consensus 60 -----------~~iPp---LP~K~~~~~~~~~~~~~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 60 -----------IVVPP---LPGKALKRQLPFRGDDGIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred -----------CccCC---CCCCceecccccccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 01122 221 0 000122 2677778889999999999999999999999999854
No 91
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.24 E-value=1.4e-05 Score=73.99 Aligned_cols=94 Identities=21% Similarity=0.394 Sum_probs=70.7
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCC---CCceeEEEEEecCCCCCCCCCCCe
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPY---NTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~---~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
+||||.+++. . ...|++|||+|++++|.|++++. ...+..++-++.. .+
T Consensus 3 ~~G~L~~~~~----~---------------~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~---------~v 54 (104)
T PF00169_consen 3 KEGWLLKKSS----S---------------RKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC---------TV 54 (104)
T ss_dssp EEEEEEEEES----S---------------SSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE---------EE
T ss_pred EEEEEEEECC----C---------------CCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc---------eE
Confidence 7999998851 0 15799999999999999999877 4567776666531 22
Q ss_pred eeccccc--CCCCcceeEEEEeCce-EEEEEecChhhHHHHHHHHHhh
Q 001225 303 YLASQVK--GSNPLRYAFQVSCGNR-SIKLRTTNSGKVKEWVAAINDA 347 (1120)
Q Consensus 303 ~~~~~~~--~~~~~~~~~~i~~~~r-~l~l~~~s~~~~~~w~~~i~~~ 347 (1120)
....... ...+..+.|.|.+..+ ++.|.|.|......|+.+|+.+
T Consensus 55 ~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~ 102 (104)
T PF00169_consen 55 RPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKA 102 (104)
T ss_dssp EEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 2111100 1235689999999997 9999999999999999999875
No 92
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.23 E-value=7.8e-06 Score=96.84 Aligned_cols=144 Identities=27% Similarity=0.405 Sum_probs=97.5
Q ss_pred EEEEecHHHH---------HHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcc-
Q 001225 377 AQWFIDGQAA---------FEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYK- 446 (1120)
Q Consensus 377 v~~lvDG~~y---------f~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd- 446 (1120)
++++.+|... -..+..+|.+|+++|+|+ +| |++.+ ..+.++|+.++++||+|+|++-+
T Consensus 253 ~~~~~~~P~~~~~~~~~~~~~~~~~~i~~A~~~i~i~----~p--Yf~~~------~~~~~al~~a~~~Gv~V~ii~~~~ 320 (438)
T COG1502 253 VQVLSSGPDKGLGSELIELNRLLLKAINSARESILIA----TP--YFVPD------RELLAALKAAARRGVDVRIIIPSL 320 (438)
T ss_pred eEEEecCCccccchhhhhHHHHHHHHHHhhceEEEEE----cC--CcCCC------HHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4566665543 367999999999999995 22 66553 67889999999999999999852
Q ss_pred -cchhhhhhcchhh--HHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCC
Q 001225 447 -EVSIALKINSMYS--KKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCP 523 (1120)
Q Consensus 447 -~~~~al~~~s~~~--k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~ 523 (1120)
...... ....+. -..| +..++++..++. + +..|.|++|||++++++|+.|+...-+
T Consensus 321 ~~~d~~~-~~~~~~~~~~~l--~~~gv~i~~~~~----g---~~lH~K~~iiD~~~~~vGS~N~~~rS~----------- 379 (438)
T COG1502 321 GANDSAI-VHAAYRAYLKEL--LEAGVKVYEYPG----G---AFLHSKVMIIDDRTVLVGSANLDPRSL----------- 379 (438)
T ss_pred CCCChHH-HHHHHHHHHHHH--HHhCCEEEEecC----C---CcceeeEEEEcCCEEEEeCCcCCHhHH-----------
Confidence 111111 010110 0122 247888877764 1 357999999999999999999952100
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeCh-HHHHHHHHHHHHHHhhh
Q 001225 524 PSLWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGP-PCRDIARHFVQRWNHAK 588 (1120)
Q Consensus 524 ~~~~pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gp-aa~dl~~~F~qrWn~~~ 588 (1120)
+.| -.+.+.|+.+ .+.++.+.|...|....
T Consensus 380 --------~lN---------------------------~E~~~~i~d~~~~~~~~~~~~~~~~~s~ 410 (438)
T COG1502 380 --------RLN---------------------------FEVGLVIEDPELALKLRREFEADLARSK 410 (438)
T ss_pred --------HHh---------------------------hhheeEEeCHHHHHHHHHHHHHHHHHHh
Confidence 000 1456778877 78889999997775543
No 93
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=98.22 E-value=6.1e-06 Score=81.50 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=64.9
Q ss_pred eeEEEEEEEee-------eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCC
Q 001225 75 LLSYTIELQYK-------QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGA 147 (1120)
Q Consensus 75 ~~~YtIeL~hG-------~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1120)
.+.|.|..+.+ .-.|+|.|||+||..||..|.. . ++..+.
T Consensus 17 yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~-----~-------~~~~~~--------------------- 63 (118)
T cd07288 17 YTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAY-----T-------HRNLFR--------------------- 63 (118)
T ss_pred cEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHH-----h-------cccccc---------------------
Confidence 68999998764 2489999999999999997773 1 111110
Q ss_pred CCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 148 VPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 148 ~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
....+|+ +|. +..+|+- .+.++||.+||+||+.+...+.++++.++.+||+
T Consensus 64 ---------~~~~~Pp---~P~-K~~~g~f~~~fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~ 116 (118)
T cd07288 64 ---------RQEEFPP---FPR-AQVFGRFEAAVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFR 116 (118)
T ss_pred ---------cCCccCC---CCC-ceeeccCCHHHHHHHHHHHHHHHHHHhCChhhcCChHHHHHHh
Confidence 0011344 331 2334433 6777888999999999999998999999999996
No 94
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=98.21 E-value=1e-05 Score=79.93 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=76.8
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQY-KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVA 135 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~h-G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 135 (1120)
.|+.++++.+.. ..+|-|+++. +.-+|.|+|+|.||+.||.+|+. .+|+..-
T Consensus 7 ~v~~~g~~k~~~------h~~Y~i~V~wsdgs~~~iyR~y~eF~~lh~~L~~-------------------~FP~EaG-- 59 (121)
T cd06889 7 DVQGVGVMQKRR------HKTYMFSVLWSDGSELFVYRSLEEFRKLHKQLKE-------------------KFPVEAG-- 59 (121)
T ss_pred EEEEEeeecccc------eeEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHH-------------------HCCcccC--
Confidence 788899998444 3588888887 55789999999999999998874 1111100
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc----cHHHHHHHHHHHHHHHHHhhcc-cccchhccccc
Q 001225 136 VVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ----TVAERAKVAMQGYLNHFMGNID-IVNSREVCKFL 210 (1120)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~----~~~~rrr~~LE~YL~~LL~~~~-~~~~~~l~~FL 210 (1120)
.-....|.+|. ||- +..+++. ..++.|+..|+.|+++||..+. +..+..+..||
T Consensus 60 -----------------~~~~~~riLP~---lP~-~~~~~~~~~~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF 118 (121)
T cd06889 60 -----------------LLRSSDRVLPK---FKD-APSLGSLKGSTSRSLARLKLLETYCQELLRLDEKVSRSPEVIQFF 118 (121)
T ss_pred -----------------CCCCCCcccCC---CCC-CcccCCcccccchHHHHHHHHHHHHHHHHcCCcceecCHHHHHhc
Confidence 00224567777 442 1224442 2577788999999999998876 46899999999
Q ss_pred ee
Q 001225 211 EV 212 (1120)
Q Consensus 211 Ev 212 (1120)
+.
T Consensus 119 ~p 120 (121)
T cd06889 119 AP 120 (121)
T ss_pred CC
Confidence 75
No 95
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=98.21 E-value=5.2e-06 Score=81.76 Aligned_cols=91 Identities=13% Similarity=0.334 Sum_probs=64.2
Q ss_pred ceeEEEEEEEee--ee---EEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCC
Q 001225 74 MLLSYTIELQYK--QF---KWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAV 148 (1120)
Q Consensus 74 ~~~~YtIeL~hG--~f---kWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1120)
.+++|+|+.+.. .| .|+|.|||+||..||..|.. . +
T Consensus 17 ~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~-----~-------------------~--------------- 57 (116)
T cd07283 17 TYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEE-----S-------------------Q--------------- 57 (116)
T ss_pred CeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHH-----h-------------------C---------------
Confidence 478999999873 34 99999999999999987763 0 0
Q ss_pred CCCCCccccccCCCCccccccccccccc--ccHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 149 PMHPSESVRNRYVPSMAALSILRPVLGK--QTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 149 ~~~~~~~~~~r~~Ps~~~lp~~r~~l~~--~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
....+|+++.-+.++...++ ..+.++|+..||.||+.++..+.+.++..+..||.
T Consensus 58 --------p~~~iPpLP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt 114 (116)
T cd07283 58 --------PTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLT 114 (116)
T ss_pred --------CCcccCCCCCcccccccccCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhc
Confidence 00123331111111111222 26777888899999999999999999999999985
No 96
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.16 E-value=1.2e-05 Score=76.31 Aligned_cols=77 Identities=14% Similarity=0.296 Sum_probs=60.7
Q ss_pred CCcceEEEEEec--CeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecCh
Q 001225 257 NKWHKVWAVLKP--GFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNS 334 (1120)
Q Consensus 257 ~~w~krW~vvkd--s~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~ 334 (1120)
..|+|||||+++ .+|.|.+++.+..++.+|-+... .+.. ... ...+.|.|.+++|...|.|.|.
T Consensus 15 K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~---------~~~~----~~~-~~~~~F~i~t~~r~y~l~A~s~ 80 (95)
T cd01265 15 RGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGA---------AFTY----DPR-EEKGRFEIHSNNEVIALKASSD 80 (95)
T ss_pred cCceeEEEEEcCCCcEEEEECCCCcccccceEECCcc---------EEEc----CCC-CCCCEEEEEcCCcEEEEECCCH
Confidence 579999999984 58999999988888888866531 1111 011 1256899999999999999999
Q ss_pred hhHHHHHHHHHhh
Q 001225 335 GKVKEWVAAINDA 347 (1120)
Q Consensus 335 ~~~~~w~~~i~~~ 347 (1120)
.++.+|+.+|+..
T Consensus 81 ~e~~~Wi~al~~~ 93 (95)
T cd01265 81 KQMNYWLQALQSK 93 (95)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 97
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=98.16 E-value=7.6e-06 Score=81.40 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=63.0
Q ss_pred ceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCC
Q 001225 74 MLLSYTIELQYK-----QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAV 148 (1120)
Q Consensus 74 ~~~~YtIeL~hG-----~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1120)
.+++|+|+.+-+ .-.|+|.|||+||..||.+|.. . .
T Consensus 18 ~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~-----~-------------------~--------------- 58 (123)
T cd07293 18 RFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELER-----E-------------------S--------------- 58 (123)
T ss_pred CEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHh-----c-------------------c---------------
Confidence 479999998843 3489999999999999987763 0 0
Q ss_pred CCCCCccccccCCCCcccccccc-----ccccc--ccHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 149 PMHPSESVRNRYVPSMAALSILR-----PVLGK--QTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 149 ~~~~~~~~~~r~~Ps~~~lp~~r-----~~l~~--~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
...+|+.+.-+.+. ...|+ .++.++|++.||.||+.++..+.++++..+..||+-
T Consensus 59 ---------~~~iPpLP~K~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~ 120 (123)
T cd07293 59 ---------KVVVPPLPGKALFRQLPFRGDDGIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQD 120 (123)
T ss_pred ---------CCccCCCCCCchhhhcccccccCCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCC
Confidence 00112211010000 00122 267777888999999999999999999999999975
No 98
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=98.14 E-value=8.1e-06 Score=81.33 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=67.8
Q ss_pred ceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCCC
Q 001225 74 MLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHPS 153 (1120)
Q Consensus 74 ~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1120)
.++.|+|..+.+ .|+|.|||+||..||..|.. . .|. .
T Consensus 19 ~Yv~Y~I~~~~~--~~~V~RRYsDF~~L~~~L~~-----~--------------~~~----------------~------ 55 (126)
T cd07285 19 SYIEYQLTPTNT--NRSVNHRYKHFDWLYERLLV-----K--------------FGL----------------A------ 55 (126)
T ss_pred CeEEEEEEeccC--CeEeeCCccHHHHHHHHHHH-----h--------------cCC----------------C------
Confidence 478999998866 47999999999999987763 0 000 0
Q ss_pred ccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceecccc
Q 001225 154 ESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSRLS 216 (1120)
Q Consensus 154 ~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~ls 216 (1120)
=.+|+ ||- |..+|+- .+.++|+..||.||+.++..+.++.+..+..||+++.-.
T Consensus 56 -----i~vPp---lP~-K~~~g~f~~~FIe~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~~ 111 (126)
T cd07285 56 -----IPIPS---LPD-KQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEK 111 (126)
T ss_pred -----cccCC---CCC-ccccCCCCHHHHHHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCHH
Confidence 01233 332 2234442 788888899999999999999999999999999997653
No 99
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.13 E-value=1.6e-05 Score=76.82 Aligned_cols=79 Identities=11% Similarity=0.231 Sum_probs=56.4
Q ss_pred CCcceEEEEEecCeEEEE--eCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecCh
Q 001225 257 NKWHKVWAVLKPGFLVLL--EDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNS 334 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~--~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~ 334 (1120)
.+|+||||||++..++|. +++.+..+..+|-+..- ..|.-+. +.++..++|.|.+..|...|.|.+.
T Consensus 22 K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~--------~~V~~~~---~~~~~~~~f~I~tp~R~f~l~Aete 90 (104)
T cd01236 22 KRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQC--------TDVVDAE---ARTGQKFSICILTPDKEHFIKAETK 90 (104)
T ss_pred ccccceEEEEeCCCEEEEeeCCCCCcccceEEEccce--------EEEeecc---cccCCccEEEEECCCceEEEEeCCH
Confidence 689999999997655655 33334567777655421 1222221 2233468999999999999999999
Q ss_pred hhHHHHHHHHHh
Q 001225 335 GKVKEWVAAIND 346 (1120)
Q Consensus 335 ~~~~~w~~~i~~ 346 (1120)
.+..+|+.+|..
T Consensus 91 ~E~~~Wi~~l~~ 102 (104)
T cd01236 91 EEISWWLNMLMV 102 (104)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 100
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=98.10 E-value=1.2e-05 Score=78.29 Aligned_cols=86 Identities=23% Similarity=0.370 Sum_probs=63.4
Q ss_pred eeEEEEEEEeee--eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCC
Q 001225 75 LLSYTIELQYKQ--FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHP 152 (1120)
Q Consensus 75 ~~~YtIeL~hG~--fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (1120)
...|.|+++-.. =.|.|+|+|++|..||.+|+. . + |.
T Consensus 16 ~y~Y~I~V~~~~~~~~~~I~RrY~eF~~Lh~kLk~-----~--------------F--------------------P~-- 54 (109)
T cd07290 16 GYAYVVKVQREGHKEATFVQRTFEEFQELHNKLRL-----L--------------F--------------------PS-- 54 (109)
T ss_pred cEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHH-----H--------------C--------------------cc--
Confidence 467999998854 459999999999999998885 1 1 10
Q ss_pred CccccccCCCCcccccccccccccc---cHHHHHHHHHHHHHHHHHhhc-ccccchhccccce
Q 001225 153 SESVRNRYVPSMAALSILRPVLGKQ---TVAERAKVAMQGYLNHFMGNI-DIVNSREVCKFLE 211 (1120)
Q Consensus 153 ~~~~~~r~~Ps~~~lp~~r~~l~~~---~~~~rrr~~LE~YL~~LL~~~-~~~~~~~l~~FLE 211 (1120)
..+|+ ||. +..+|+. .++++|+..||.||++||..+ .+.++..+..||+
T Consensus 55 ------~~lP~---LP~-k~~~g~s~~~~vae~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~ 107 (109)
T cd07290 55 ------SKLPS---FPS-RFVIGRSRGEAVAERRKEELNGYIWHLIHAPPEVAECDLVYTFFH 107 (109)
T ss_pred ------ccCCC---CCC-CcccCccccHHHHHHHHHHHHHHHHHHHcCChheecCHHHHHhcc
Confidence 12344 442 2234442 678888899999999999765 4679999999986
No 101
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=98.09 E-value=1.4e-05 Score=80.36 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=66.2
Q ss_pred ceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCC
Q 001225 74 MLLSYTIELQYK-----QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAV 148 (1120)
Q Consensus 74 ~~~~YtIeL~hG-----~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1120)
.++.|+|+.+-+ .-.|+|.|||+||..||.+|... .|
T Consensus 20 ~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~-------------------~g------------------- 61 (132)
T cd07294 20 RFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-------------------SK------------------- 61 (132)
T ss_pred CEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHc-------------------CC-------------------
Confidence 378999997732 34799999999999999877630 00
Q ss_pred CCCCCccccccCCCCcccccc---c-----ccccc--cccHHHHHHHHHHHHHHHHHhhcccccchhccccceecccc
Q 001225 149 PMHPSESVRNRYVPSMAALSI---L-----RPVLG--KQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSRLS 216 (1120)
Q Consensus 149 ~~~~~~~~~~r~~Ps~~~lp~---~-----r~~l~--~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~ls 216 (1120)
..+|+ ||. + ....+ ..++.++|+..||+||+.++..+.++++..+..||+-+.++
T Consensus 62 ----------~~iPp---LP~K~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~~ 126 (132)
T cd07294 62 ----------IVVPP---LPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETID 126 (132)
T ss_pred ----------CccCC---CCCCceeccccccccccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCcC
Confidence 01222 221 0 00011 22677777789999999999999999999999999999886
No 102
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.07 E-value=2.5e-05 Score=75.12 Aligned_cols=83 Identities=16% Similarity=0.294 Sum_probs=58.6
Q ss_pred CCcceEEEEEecCeEEEEeCCCCCcee-EEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecChh
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNTRVL-DIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSG 335 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~~~~-~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~ 335 (1120)
.+|++|||+++++.|.|.++.....+. .+|-+..-. .|..+...+......+.|.|.+.+|+..|.+.|..
T Consensus 17 K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~--------sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~ 88 (101)
T cd01264 17 KRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIR--------SVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEK 88 (101)
T ss_pred ecceeEEEEEeCCEEEEEeccCccCCCCceEEcccce--------EEeeccccccccccCcEEEEEcCCceEEEEeCCHH
Confidence 689999999999999999876433333 455444211 12211110111124689999999999999999999
Q ss_pred hHHHHHHHHHhh
Q 001225 336 KVKEWVAAINDA 347 (1120)
Q Consensus 336 ~~~~w~~~i~~~ 347 (1120)
+...|+++|..+
T Consensus 89 e~e~WI~~i~~a 100 (101)
T cd01264 89 NAEEWLQCLNIA 100 (101)
T ss_pred HHHHHHHHHHhh
Confidence 999999999764
No 103
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.06 E-value=2.7e-05 Score=74.92 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=59.2
Q ss_pred CcceEEEEEecC------eEEEEeCCC-----CCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceE
Q 001225 258 KWHKVWAVLKPG------FLVLLEDPY-----NTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRS 326 (1120)
Q Consensus 258 ~w~krW~vvkds------~l~y~~d~~-----~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~ 326 (1120)
.|+|||||++.. .|-|+++-. +..+..||-++.-+.+. + ......+|+|.|.+..|.
T Consensus 13 ~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~----------~--~~d~k~~~~f~i~t~dr~ 80 (101)
T cd01257 13 SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNIN----------K--RADAKHRHLIALYTRDEY 80 (101)
T ss_pred CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEe----------e--ccccccCeEEEEEeCCce
Confidence 589999999988 799997532 26789999887532111 1 011123589999999999
Q ss_pred EEEEecChhhHHHHHHHHHh
Q 001225 327 IKLRTTNSGKVKEWVAAIND 346 (1120)
Q Consensus 327 l~l~~~s~~~~~~w~~~i~~ 346 (1120)
..|.|.|.....+|..+|.+
T Consensus 81 f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 81 FAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEeCCHHHHHHHHHHHhh
Confidence 99999999999999999875
No 104
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.06 E-value=3.1e-05 Score=71.75 Aligned_cols=91 Identities=21% Similarity=0.407 Sum_probs=63.1
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCC--CceeEEEEEecCCCCCCCCCCCee
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYN--TRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~--~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
|||||.+++... ...|.+|||+++++.|.|.+++.+ ..+...+-++. ..+.
T Consensus 1 k~G~L~kk~~~~------------------~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~---------~~v~ 53 (94)
T cd01250 1 KQGYLYKRSSKS------------------NKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRR---------CTVR 53 (94)
T ss_pred CcceEEEECCCc------------------CCCceEEEEEEeCCeEEEEcCCcccccccceEEeccc---------eEEe
Confidence 699999874210 146999999999999999987654 22322222221 1121
Q ss_pred ecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHh
Q 001225 304 LASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAIND 346 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~ 346 (1120)
.. .+.....+.|.|....+.+.|.+.+...+.+|+.+|..
T Consensus 54 ~~---~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 54 HN---GKQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred cC---ccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence 11 11112568999999999999999999999999999864
No 105
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.05 E-value=3.6e-05 Score=70.89 Aligned_cols=75 Identities=20% Similarity=0.425 Sum_probs=59.5
Q ss_pred CCcceEEEEEecCeEEEEeCCCCC--ceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCc-eEEEEEecC
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNT--RVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN-RSIKLRTTN 333 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~--~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s 333 (1120)
..|++|||++++..|.|.++..+. .+...+.++.. .+... ....+.|.|.+.+ +.+.|.+.+
T Consensus 13 ~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~---------~~~~~------~~~~~~F~i~~~~~~~~~~~a~s 77 (91)
T cd01246 13 KGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGA---------VISED------DSDDKCFTIDTGGDKTLHLRANS 77 (91)
T ss_pred CCceeeEEEEECCEEEEEecCccCCCCceEEEEeceE---------EEEEC------CCCCcEEEEEcCCCCEEEEECCC
Confidence 469999999999999999988766 77777777631 12211 1226889998877 999999999
Q ss_pred hhhHHHHHHHHHh
Q 001225 334 SGKVKEWVAAIND 346 (1120)
Q Consensus 334 ~~~~~~w~~~i~~ 346 (1120)
...+.+|+.+|..
T Consensus 78 ~~e~~~Wi~al~~ 90 (91)
T cd01246 78 EEERQRWVDALEL 90 (91)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 106
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.00 E-value=5.3e-05 Score=71.46 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=54.9
Q ss_pred CCcceEEEEEecCeEEEEeCCCCC--ceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCc-eEEEEEecC
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNT--RVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN-RSIKLRTTN 333 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~--~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s 333 (1120)
..|++|||||+++.|.|++++.+. .++.+|-+.. ..+. .. + .....|.|.... |...|++.|
T Consensus 13 k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~---------~~i~-~~---~--~~~~~F~i~~~~~r~~~L~A~s 77 (91)
T cd01247 13 NGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKK---------AIIA-AH---E--FDENRFDISVNENVVWYLRAEN 77 (91)
T ss_pred CCCceEEEEEECCEEEEEecCccCcCCCcEEEECcc---------cEEE-cC---C--CCCCEEEEEeCCCeEEEEEeCC
Confidence 579999999999999999986653 3566665542 1111 10 1 124678885444 999999999
Q ss_pred hhhHHHHHHHHHh
Q 001225 334 SGKVKEWVAAIND 346 (1120)
Q Consensus 334 ~~~~~~w~~~i~~ 346 (1120)
......|+.+|+.
T Consensus 78 ~~e~~~Wi~al~~ 90 (91)
T cd01247 78 SQSRLLWMDSVVR 90 (91)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999874
No 107
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.96 E-value=7e-05 Score=74.36 Aligned_cols=91 Identities=16% Similarity=0.371 Sum_probs=64.9
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeec
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLA 305 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~ 305 (1120)
|||||.|+.+ . ...|++||||++++.|.|.+++.+..+..+|.++. ..|...
T Consensus 2 k~G~L~K~~~--------------~-----~~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~---------~~v~~~ 53 (125)
T cd01252 2 REGWLLKQGG--------------R-----VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLEN---------VSIREV 53 (125)
T ss_pred cEEEEEEeCC--------------C-----CCCeEeEEEEEECCEEEEEcCCCCCCceEEEECCC---------cEEEEc
Confidence 8999998731 0 15699999999999999999888788888877762 112111
Q ss_pred ccccCCCCcceeEEEEe---------------------CceEEEEEecChhhHHHHHHHHHhhc
Q 001225 306 SQVKGSNPLRYAFQVSC---------------------GNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 306 ~~~~~~~~~~~~~~i~~---------------------~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+.....+.|.|.. ..+...+.|.+...+.+|+.+|....
T Consensus 54 ----~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~ 113 (125)
T cd01252 54 ----EDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASI 113 (125)
T ss_pred ----ccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 1112334555443 33566699999999999999999875
No 108
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.94 E-value=8.2e-05 Score=70.46 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=59.7
Q ss_pred CCcceEEEEEec--CeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeeccc--c-cCCCCcceeEEEEeCceEEEEEe
Q 001225 257 NKWHKVWAVLKP--GFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQ--V-KGSNPLRYAFQVSCGNRSIKLRT 331 (1120)
Q Consensus 257 ~~w~krW~vvkd--s~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~i~~~~r~l~l~~ 331 (1120)
..|++||||+++ ..|.|.+++.+.++..+|-++..- .+..... . .......+.|.|....|...|.+
T Consensus 13 k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~--------~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a 84 (101)
T cd01235 13 KGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVK--------SVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLA 84 (101)
T ss_pred CCccceEEEEECCCCEEEEecCCCCCccceEEEcceeE--------EEeecCCCCCCCCCCCCceEEEEEeCCceEEEEC
Confidence 579999999994 489999988888888887666321 1111000 0 01112245688888999999999
Q ss_pred cChhhHHHHHHHHHhh
Q 001225 332 TNSGKVKEWVAAINDA 347 (1120)
Q Consensus 332 ~s~~~~~~w~~~i~~~ 347 (1120)
.+...+.+|+.+|+..
T Consensus 85 ~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 85 ENINEAQRWKEKIQQC 100 (101)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999999764
No 109
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.93 E-value=6.3e-05 Score=72.92 Aligned_cols=83 Identities=22% Similarity=0.347 Sum_probs=61.3
Q ss_pred CCcceEEEEEecCe-------EEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEE
Q 001225 257 NKWHKVWAVLKPGF-------LVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKL 329 (1120)
Q Consensus 257 ~~w~krW~vvkds~-------l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l 329 (1120)
..|++||||+++.- |.|.+++.+.++..+|.++.-...+. .+... .......+.|.|....|.+.|
T Consensus 17 ~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~----~~~~~---~~~~~~~~~f~i~t~~r~y~l 89 (108)
T cd01266 17 TKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDP----GLLCT---AGNCIFGYGFDIETIVRDLYL 89 (108)
T ss_pred cCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcc----ccccc---ccCcccceEEEEEeCCccEEE
Confidence 58999999999864 69999888889999988774211100 00000 011224578999999999999
Q ss_pred EecChhhHHHHHHHHHh
Q 001225 330 RTTNSGKVKEWVAAIND 346 (1120)
Q Consensus 330 ~~~s~~~~~~w~~~i~~ 346 (1120)
.+.|...+.+|+.+|.+
T Consensus 90 ~A~s~ee~~~Wi~~I~~ 106 (108)
T cd01266 90 VAKNEEEMTLWVNCICK 106 (108)
T ss_pred EECCHHHHHHHHHHHHh
Confidence 99999999999999975
No 110
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=97.93 E-value=3.8e-06 Score=62.16 Aligned_cols=25 Identities=36% Similarity=0.687 Sum_probs=17.6
Q ss_pred eeeeeEEEEeccEEEEcccccccCC
Q 001225 919 YVHSKVMIIDDRAALIGSSNINDRS 943 (1120)
Q Consensus 919 yvHSKlmIVDD~~~iIGSANiN~RS 943 (1120)
..|+|++||||++++|||+||++|+
T Consensus 4 ~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 4 SHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp EE---EEEETTTEEEEE---SSHHH
T ss_pred ceeeEEEEEcCCEEEECceecCCCC
Confidence 7899999999999999999999875
No 111
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=97.91 E-value=4.1e-05 Score=75.46 Aligned_cols=92 Identities=11% Similarity=0.287 Sum_probs=62.8
Q ss_pred CceeEEEEEEEe--ee---eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCC
Q 001225 73 PMLLSYTIELQY--KQ---FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGA 147 (1120)
Q Consensus 73 ~~~~~YtIeL~h--G~---fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1120)
..++.|+|.-+- +. -.|+|.|||+||..||..|.. . +..
T Consensus 16 ~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~-----~-------~p~------------------------ 59 (116)
T cd07284 16 ETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEE-----A-------HPT------------------------ 59 (116)
T ss_pred cCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHH-----H-------CCC------------------------
Confidence 357899998774 33 378999999999999987763 0 000
Q ss_pred CCCCCCccccccCCCCcccccccccccc--cccHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 148 VPMHPSESVRNRYVPSMAALSILRPVLG--KQTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 148 ~~~~~~~~~~~r~~Ps~~~lp~~r~~l~--~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
..+|+++.-+.++...+ ...+.++|++.||.||+.++..+.+..+.++..||.
T Consensus 60 -----------~~iPplP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~ 114 (116)
T cd07284 60 -----------LIIPPLPEKFVMKGMVERFNEDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLT 114 (116)
T ss_pred -----------ceeCCCCCcchhhhccccCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhc
Confidence 11233111111111111 126777777899999999999999999999999986
No 112
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.86 E-value=0.00012 Score=70.20 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=55.7
Q ss_pred CCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecChhh
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGK 336 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~ 336 (1120)
..|++|||++.+.-|.|.++|.. .+...|-+..- + ....++. ...+..+.|+|....|.+.+.|.+..+
T Consensus 19 ~n~KkRwF~Lt~~~L~Y~k~~~~-~~~g~I~L~~i-----~--~ve~v~~---~~~~~~~~fqivt~~r~~yi~a~s~~E 87 (98)
T cd01244 19 LHFKKRYFQLTTTHLSWAKDVQC-KKSALIKLAAI-----K--GTEPLSD---KSFVNVDIITIVCEDDTMQLQFEAPVE 87 (98)
T ss_pred cCCceeEEEECCCEEEEECCCCC-ceeeeEEccce-----E--EEEEcCC---cccCCCceEEEEeCCCeEEEECCCHHH
Confidence 57999999999999999998864 33333322210 0 0001111 112235899999999999999999999
Q ss_pred HHHHHHHHHh
Q 001225 337 VKEWVAAIND 346 (1120)
Q Consensus 337 ~~~w~~~i~~ 346 (1120)
..+|+.+|..
T Consensus 88 ~~~Wi~al~k 97 (98)
T cd01244 88 ATDWLNALEK 97 (98)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 113
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.61 E-value=0.00083 Score=60.77 Aligned_cols=96 Identities=23% Similarity=0.294 Sum_probs=69.1
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCC---CceeEEEEEecCCCCCCCCCCC
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYN---TRVLDIIVFELLPTTNGKEGPG 301 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~---~~~~~v~l~D~~~~~~~~~~~~ 301 (1120)
-+||+|.++... ....|+++|++|.+..|.|.++... ..+..++.++.. .
T Consensus 2 ~~~G~l~~~~~~------------------~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~---------~ 54 (102)
T smart00233 2 IKEGWLYKKSGG------------------KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI---------T 54 (102)
T ss_pred ceeEEEEEeCCC------------------ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC---------E
Confidence 379999876310 1157999999999999999986654 345666666531 2
Q ss_pred eeecccccCCCCcceeEEEEeCce-EEEEEecChhhHHHHHHHHHhhc
Q 001225 302 VYLASQVKGSNPLRYAFQVSCGNR-SIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~i~~~~r-~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+...... ...+..++|.|.+..+ .+.+.|.|......|..+|..+.
T Consensus 55 v~~~~~~-~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 55 VREAPDP-DSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEeCCCC-ccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 2221110 0024578999999998 99999999999999999998753
No 114
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=97.58 E-value=0.00063 Score=66.63 Aligned_cols=103 Identities=20% Similarity=0.307 Sum_probs=52.3
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEe-cCeEEEEeCCCCCceeEEEEEecCCCCCCCC------
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLK-PGFLVLLEDPYNTRVLDIIVFELLPTTNGKE------ 298 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvk-ds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~------ 298 (1120)
|||||.|... . -...|++|||||+ |..|.|.+.|.+.....|++=.+. ..-.++
T Consensus 1 k~G~l~K~~~-~-----------------~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~-~~~~~~~~~~~~ 61 (112)
T PF15413_consen 1 KEGYLYKWGN-K-----------------FGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESS-RVIRKGDWSISR 61 (112)
T ss_dssp EEEEEEE--T-T-----------------S-S--EEEEEEEE-TTEEEEESS-------------TT--SB-SEEEE---
T ss_pred CCceEEEecC-C-----------------CCcCccccEEEEEeCCEEEEeecccccccccccccchh-ceEeecccCccc
Confidence 7999998631 1 0156999999999 999999987443332222221110 000000
Q ss_pred -CCCeeecc-cccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhh
Q 001225 299 -GPGVYLAS-QVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDA 347 (1120)
Q Consensus 299 -~~~~~~~~-~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~ 347 (1120)
...+.... ...........+.|..+++++.|+|.+.....+|+++|.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 62 RSSRIQGIKDKNPFGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp GGGT-EEEES-T--SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred ccccccccccCCcccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 00000000 00001112456788999999999999999999999999863
No 115
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.36 E-value=0.001 Score=82.95 Aligned_cols=122 Identities=23% Similarity=0.346 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHhccC-----eEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCC
Q 001225 782 GSIHSAYCSLIESAEH-----FIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDD 856 (1120)
Q Consensus 782 ~sI~~ayl~aI~~A~h-----~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d 856 (1120)
+|. ...+++|+.|.+ .|.|+- |-++. + .+|.+||.++ +++|++|.|++-+...|..+
T Consensus 339 ~Sf-~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~---~----s~ii~aL~~A------a~~Gk~V~v~veLkArfde~--- 400 (672)
T TIGR03705 339 ESF-DPVVEFLRQAAEDPDVLAIKQTL-YRTSK---D----SPIIDALIEA------AENGKEVTVVVELKARFDEE--- 400 (672)
T ss_pred cCH-HHHHHHHHHHhcCCCceEEEEEE-EEecC---C----cHHHHHHHHH------HHcCCEEEEEEEehhhccch---
Confidence 355 567889999999 899985 55543 1 2688888764 45699999999887665321
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEec-------
Q 001225 857 GGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDD------- 929 (1120)
Q Consensus 857 ~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD------- 929 (1120)
+=.+| .++|.+ +|+.+ +|++ .| +.+|||+|+||.
T Consensus 401 -------~ni~w------------a~~le~-aG~~v-----iyg~--------~~------~k~H~K~~li~r~~~~~~~ 441 (672)
T TIGR03705 401 -------ANIRW------------ARRLEE-AGVHV-----VYGV--------VG------LKTHAKLALVVRREGGELR 441 (672)
T ss_pred -------hhHHH------------HHHHHH-cCCEE-----EEcC--------CC------eeeeeEEEEEEEeeCCceE
Confidence 11223 245666 78865 2333 12 489999999998
Q ss_pred cEEEEcccccccCCCCCCCCceeeEEEEccchh
Q 001225 930 RAALIGSSNINDRSLLGSRDSEIDVVIEDKEFL 962 (1120)
Q Consensus 930 ~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~~v 962 (1120)
+++.||++|.|...-. .-+++++..-+++.+
T Consensus 442 ~y~~igTgN~n~~ta~--~y~D~~l~t~~~~i~ 472 (672)
T TIGR03705 442 RYVHLGTGNYHPKTAR--LYTDLSLFTADPEIG 472 (672)
T ss_pred EEEEecCCCCCCcccc--cccceeEEEeChHHH
Confidence 4799999999999753 456777777776643
No 116
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.34 E-value=0.035 Score=64.22 Aligned_cols=123 Identities=23% Similarity=0.251 Sum_probs=75.9
Q ss_pred CCceEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhC--CcEEEEEEcccchh
Q 001225 373 DGSQAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKE--GIQVYILLYKEVSI 450 (1120)
Q Consensus 373 ~gn~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~r--GVkVrILvyd~~~~ 450 (1120)
.|..+.+.....++|+.+...|.+||.+|+|+ .+||= .....|.+-|..+.+. -.+|.||+ |....
T Consensus 27 ~~d~idiihep~~fy~~lk~~I~~aq~Ri~la------sLYlG-----~~E~elv~cl~~aL~~~~~L~v~iLl-D~~rg 94 (469)
T KOG3964|consen 27 NGDDIDIIHEPPEFYQRLKKLIKKAQRRIFLA------SLYLG-----KLERELVDCLSNALEKNPSLKVSILL-DFLRG 94 (469)
T ss_pred ccccceeecCCHHHHHHHHHHHHHhhheeeee------eeccc-----hhHHHHHHHHHHHhccCCCcEEEeeh-hhhhh
Confidence 46788999999999999999999999999997 68883 3566777777776654 68999987 43211
Q ss_pred hhhh-cc--hhhHHHHHcc-cCCeEE--EEcCCC--C-------CcccccccCcceEEEEeCCeEEEccccCC
Q 001225 451 ALKI-NS--MYSKKRLLKI-HENVKV--LRHPDH--V-------STGVYLWSHHEKLVIVDYRISFIGGLDLC 508 (1120)
Q Consensus 451 al~~-~s--~~~k~~L~~~-~~nI~V--~r~P~~--~-------~~~~~~~rhH~KivVID~~vAFvGGinL~ 508 (1120)
..+. ++ ....-++... ...+.+ .+-|.. + +...-..-.|.||.-+|+.+ .+-|.|++
T Consensus 95 tr~~~~~~s~llp~~l~kkf~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fddev-iiSGanls 166 (469)
T KOG3964|consen 95 TRELPNSCSALLPVWLGKKFPERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDEV-IISGANLS 166 (469)
T ss_pred cccCcccchhhchHHHhhhhhhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHhh-hcccccch
Confidence 1111 11 0000001100 012222 211321 0 01112356899999999987 46788996
No 117
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.33 E-value=0.0012 Score=59.20 Aligned_cols=78 Identities=18% Similarity=0.351 Sum_probs=58.4
Q ss_pred CCcceEEEEEecCeEEEEeCCCC---CceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCc-eEEEEEec
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYN---TRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN-RSIKLRTT 332 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~---~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~ 332 (1120)
..|+++|++|.++.|.+++.+.. ..+..++.++. ..+.... ......+.|.|.+.+ +.+.++|.
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~---------~~v~~~~---~~~~~~~~f~i~~~~~~~~~~~~~ 81 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG---------AEVEESP---DDSGRKNCFEIRTPDGRSYLLQAE 81 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC---------CEEEECC---CcCCCCcEEEEecCCCcEEEEEeC
Confidence 57999999999999999986655 35666666552 2222211 111246899999888 99999999
Q ss_pred ChhhHHHHHHHHHh
Q 001225 333 NSGKVKEWVAAIND 346 (1120)
Q Consensus 333 s~~~~~~w~~~i~~ 346 (1120)
|...+..|+.+|+.
T Consensus 82 s~~~~~~W~~~l~~ 95 (96)
T cd00821 82 SEEEREEWIEALQS 95 (96)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999875
No 118
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.29 E-value=0.0017 Score=62.41 Aligned_cols=94 Identities=19% Similarity=0.319 Sum_probs=53.0
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEe-cCeEE-EEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLK-PGFLV-LLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvk-ds~l~-y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
.|||||.|+.. -...|++|||+++ ++-|+ |-++|.+.. .+++..+. ..+
T Consensus 2 ~k~G~L~K~g~-------------------~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~-~~~i~l~~---------~~v 52 (102)
T cd01241 2 VKEGWLHKRGE-------------------YIKTWRPRYFLLKSDGSFIGYKEKPEDGD-PFLPPLNN---------FSV 52 (102)
T ss_pred cEEEEEEeecC-------------------CCCCCeeEEEEEeCCCeEEEEecCCCccC-ccccccCC---------eEE
Confidence 48999998731 0157999999999 77666 554453332 12222211 011
Q ss_pred eecccccCCCCcceeEEEEeCc----eEEEEEecChhhHHHHHHHHHhh
Q 001225 303 YLASQVKGSNPLRYAFQVSCGN----RSIKLRTTNSGKVKEWVAAINDA 347 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~~~----r~l~l~~~s~~~~~~w~~~i~~~ 347 (1120)
.-+.......+..+.|.|...+ ....+.|.|.....+|+.+|+..
T Consensus 53 ~~~~~~~~~~~~~~~F~i~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 53 AECQLMKTERPRPNTFIIRCLQWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred eeeeeeeccCCCcceEEEEeccCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 0000000112334678886211 12256789999999999999764
No 119
>PF15409 PH_8: Pleckstrin homology domain
Probab=97.28 E-value=0.0017 Score=61.14 Aligned_cols=75 Identities=21% Similarity=0.401 Sum_probs=59.9
Q ss_pred CCcceEEEEE--ecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecCh
Q 001225 257 NKWHKVWAVL--KPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNS 334 (1120)
Q Consensus 257 ~~w~krW~vv--kds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~ 334 (1120)
..|.||||++ +++.|-|..++.+++++.-+-+-. ..|++ +.....|.|++|.....||+.|.
T Consensus 12 qG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~---------a~is~-------~~~~~~I~idsg~~i~hLKa~s~ 75 (89)
T PF15409_consen 12 QGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSL---------AVISA-------NKKSRRIDIDSGDEIWHLKAKSQ 75 (89)
T ss_pred CCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccc---------eEEEe-------cCCCCEEEEEcCCeEEEEEcCCH
Confidence 4699999999 999999999898888877764431 11221 22345799999999999999999
Q ss_pred hhHHHHHHHHHhh
Q 001225 335 GKVKEWVAAINDA 347 (1120)
Q Consensus 335 ~~~~~w~~~i~~~ 347 (1120)
.....|+.+++.+
T Consensus 76 ~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 76 EDFQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
No 120
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=97.28 E-value=0.0013 Score=62.52 Aligned_cols=96 Identities=21% Similarity=0.237 Sum_probs=65.7
Q ss_pred eEEeeeeccCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccccc
Q 001225 58 ATIVAVSRPDSSDISPMLLSYTIELQY-KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAV 136 (1120)
Q Consensus 58 ~~I~~ver~~s~~~~~~~~~YtIeL~h-G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 136 (1120)
|+|++..+..+ ++|-|.+.. ++=.=.|+|.+.+|..||.+|++ .
T Consensus 2 ~~i~~f~k~~s-------~lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~-----~----------------------- 46 (101)
T cd06896 2 ATILGFSKKSS-------NLYLVQVTQSCNLVSLTEKSFEQFSELHSQLQK-----Q----------------------- 46 (101)
T ss_pred ceEEEeecccc-------eEEEEEEEEeCCCcceeeecHHHHHHHHHHHHH-----H-----------------------
Confidence 55666655443 579999887 44556799999999999999985 1
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccccHHHHHHHHHHHHHHHHHhhc-ccccchhccccce
Q 001225 137 VQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQTVAERAKVAMQGYLNHFMGNI-DIVNSREVCKFLE 211 (1120)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~~~~~rrr~~LE~YL~~LL~~~-~~~~~~~l~~FLE 211 (1120)
.| .+.+|+ +|. +=.++....+.+|.+.||.||+.||..+ .+.++..+..||+
T Consensus 47 -----------FP--------~~~LP~---fP~-~~~~~~~~~~~~R~~~L~~Yl~~Ll~~~~eVa~sd~v~sFF~ 99 (101)
T cd06896 47 -----------FP--------SLALPE---FPH-WWHLPFTDSDHKRVRDLNHYLEQLLSGSREVANSDCVLSFFL 99 (101)
T ss_pred -----------Cc--------cccccC---CCC-ccccCcccHHHHHHHHHHHHHHHHHccCHHHhcchHHHHHhh
Confidence 11 133444 221 0011222345677789999999999875 4689999999985
No 121
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.24 E-value=0.00027 Score=52.27 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=21.8
Q ss_pred ccCcceEEEEeCCeEEEccccCC
Q 001225 486 WSHHEKLVIVDYRISFIGGLDLC 508 (1120)
Q Consensus 486 ~rhH~KivVID~~vAFvGGinL~ 508 (1120)
+++|.|++|||++.+|+||.|++
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~ 25 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLD 25 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCC
Confidence 57899999999999999999997
No 122
>PF13918 PLDc_3: PLD-like domain
Probab=97.23 E-value=0.0013 Score=69.25 Aligned_cols=84 Identities=23% Similarity=0.278 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHh-hCCcEEEEEE--cccchhhhhhcchhhHHH
Q 001225 386 AFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKA-KEGIQVYILL--YKEVSIALKINSMYSKKR 462 (1120)
Q Consensus 386 yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA-~rGVkVrILv--yd~~~~al~~~s~~~k~~ 462 (1120)
-.+||+..|+.|++.|+|+-...-|-+ .+.. ...-...||++|.+|| +|||+||+|+ |+..... .+ .|. +.
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~-~~~~-~~~YWP~ID~ALR~AA~~R~V~VRlLIS~W~ht~p~-~~--~fL-~S 156 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTS-RYSK-PNRYWPVIDDALRRAAIERGVKVRLLISCWKHTDPS-MF--PFL-RS 156 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCee-ecCC-CCCcchhHHHHHHHHHHHcCCeEEEEEeecCCCChh-HH--HHH-HH
Confidence 478999999999999999988888854 3332 1344568999999887 8999999998 5543221 11 122 33
Q ss_pred HHcc---cCCeEEEEc
Q 001225 463 LLKI---HENVKVLRH 475 (1120)
Q Consensus 463 L~~~---~~nI~V~r~ 475 (1120)
|..+ +.+|+|.+|
T Consensus 157 L~~l~~~~~~i~Vk~F 172 (177)
T PF13918_consen 157 LQALNVGNCSIEVKIF 172 (177)
T ss_pred HHHhCcCCccEEEEEE
Confidence 3333 456777666
No 123
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.93 E-value=0.0039 Score=60.40 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=56.4
Q ss_pred CCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCc----eEEEEEec
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN----RSIKLRTT 332 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----r~l~l~~~ 332 (1120)
..|++|||++||.+|.|.++.++....-++-+... +..+.... .-...+++|++...+ |...|+|.
T Consensus 18 K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~-------gcev~~dv---~~~~~kf~I~l~~ps~~~~r~y~l~cd 87 (106)
T cd01237 18 KGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLK-------GCEVTPDV---NVAQQKFHIKLLIPTAEGMNEVWLRCD 87 (106)
T ss_pred hhheeEEEEEeCCEEEEEccchhcCCCCeEEEecC-------ceEEcccc---cccccceEEEEecCCccCCeEEEEECC
Confidence 46999999999999999987665433333333211 01111000 001236888888777 99999999
Q ss_pred ChhhHHHHHHHHHhhc
Q 001225 333 NSGKVKEWVAAINDAG 348 (1120)
Q Consensus 333 s~~~~~~w~~~i~~~~ 348 (1120)
|..+..+|+++...++
T Consensus 88 sEeqya~Wmaa~rlas 103 (106)
T cd01237 88 NEKQYAKWMAACRLAS 103 (106)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999998765
No 124
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.92 E-value=0.0044 Score=59.53 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=54.2
Q ss_pred CCcceEEEEEec----CeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCC-CCcceeEEEEeCce-EEEEE
Q 001225 257 NKWHKVWAVLKP----GFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGS-NPLRYAFQVSCGNR-SIKLR 330 (1120)
Q Consensus 257 ~~w~krW~vvkd----s~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~r-~l~l~ 330 (1120)
..|++|||++.. +.|.|++++-+.++.+++.... +.+- ++.++ -+..+-|.|.+.++ +.-.-
T Consensus 14 K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~-----------~~V~-~v~ds~~~r~~cFel~~~~~~~~y~~ 81 (98)
T cd01245 14 KLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSD-----------AYLY-PVHDSLFGRPNCFQIVERALPTVYYS 81 (98)
T ss_pred cccceeEEEEecCCCCceEEEEcCCCCCCccceeeccc-----------cEEE-EccccccCCCeEEEEecCCCCeEEEE
Confidence 579999999986 9999999888888887544331 1111 11111 12358899999887 44455
Q ss_pred ecChhhHHHHHHHHHh
Q 001225 331 TTNSGKVKEWVAAIND 346 (1120)
Q Consensus 331 ~~s~~~~~~w~~~i~~ 346 (1120)
|.+..+..+|+.+|..
T Consensus 82 ~a~~~er~~Wi~~l~~ 97 (98)
T cd01245 82 CRSSEERDKWIESLQA 97 (98)
T ss_pred eCCHHHHHHHHHHHhc
Confidence 5555999999999874
No 125
>PLN02866 phospholipase D
Probab=96.89 E-value=0.0059 Score=78.23 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHhccCeEEEEeee-----eccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 001225 782 GSIHSAYCSLIESAEHFIYIENQF-----FISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLP 845 (1120)
Q Consensus 782 ~sI~~ayl~aI~~A~h~IYIEnQy-----Fis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP 845 (1120)
.....|.+++|++|+++|||+.=. |+-.. .++....+|.++|.++ +++||+|+|++=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp-~~D~~g~RL~~lL~rK------AkrGVkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRP-FHDHESSRLDSLLEAK------AKQGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEec-CCCchHHHHHHHHHHH------HHCCCEEEEEEE
Confidence 379999999999999999994311 22110 1223455677777653 567999999853
No 126
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=96.88 E-value=0.011 Score=53.35 Aligned_cols=78 Identities=17% Similarity=0.335 Sum_probs=56.2
Q ss_pred CCcceEEEEEecCeEEEEeCCCCCcee-EEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeC---ceEEEEEec
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNTRVL-DIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCG---NRSIKLRTT 332 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~~~~-~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~r~l~l~~~ 332 (1120)
..|+++|++|.++.|.|+++....... .++.+... .+.... ...+..+.|.|... .+.+.|.|.
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~---------~v~~~~---~~~~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEI---------SVEEDP---DGSDDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccce---------EEEECC---CCCCCCceEEEECCCCCcEEEEEEcC
Confidence 689999999999999999855444433 24444321 122111 11135688999988 799999999
Q ss_pred ChhhHHHHHHHHHh
Q 001225 333 NSGKVKEWVAAIND 346 (1120)
Q Consensus 333 s~~~~~~w~~~i~~ 346 (1120)
+...+..|+.+|..
T Consensus 85 ~~~~~~~W~~al~~ 98 (99)
T cd00900 85 SEEEAQEWVEALQQ 98 (99)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999875
No 127
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.86 E-value=0.0066 Score=60.54 Aligned_cols=82 Identities=18% Similarity=0.371 Sum_probs=51.7
Q ss_pred CCcceEEEEEecCeEEEEeCCCC---CceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCc---------
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYN---TRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN--------- 324 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~---~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------- 324 (1120)
..|++||||+++++|.|.++|.+ ..++.+|-+..-..+. +.....+.-+..+.|.|....
T Consensus 17 k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~--------v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~ 88 (122)
T cd01263 17 GAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSE--------GASAVRDICARPNTFHLDVWRPKMETDDET 88 (122)
T ss_pred CCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccc--------cccCChhhcCCCCeEEEEEecccccccccc
Confidence 57999999999999999998887 3466666665321111 100000122344566664321
Q ss_pred ----------e-EEEEEecChhhHHHHHHHHHh
Q 001225 325 ----------R-SIKLRTTNSGKVKEWVAAIND 346 (1120)
Q Consensus 325 ----------r-~l~l~~~s~~~~~~w~~~i~~ 346 (1120)
| ...|-+.|..+..+|+.+|++
T Consensus 89 ~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 89 LVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred eeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 1 234557888999999999986
No 128
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.80 E-value=0.0098 Score=56.93 Aligned_cols=80 Identities=19% Similarity=0.325 Sum_probs=51.4
Q ss_pred CCcceEEEEEecCeEEEEeCCCCC--ceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEe-CceEEEEEecC
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNT--RVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSC-GNRSIKLRTTN 333 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~--~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~r~l~l~~~s 333 (1120)
..|++||++++++-|.|.+++... ....++.+|. . ...+.+.. +....++-|.|.+ +++.+.|.+.+
T Consensus 21 ~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l------~-~~~i~~~~---~~~k~~~~F~l~~~~~~~~~f~a~s 90 (104)
T cd01253 21 RSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDL------T-GAQCEVAS---DYTKKKHVFRLRLPDGAEFLFQAPD 90 (104)
T ss_pred CCcceEEEEEeCCEEEEEecCcccccCCCCCCcEec------c-CCEEEecC---CcccCceEEEEEecCCCEEEEECCC
Confidence 579999999999999999876432 1111112221 0 11222211 1112347788753 45889999999
Q ss_pred hhhHHHHHHHHHh
Q 001225 334 SGKVKEWVAAIND 346 (1120)
Q Consensus 334 ~~~~~~w~~~i~~ 346 (1120)
...+..|+.+|+.
T Consensus 91 ~e~~~~Wi~aL~~ 103 (104)
T cd01253 91 EEEMSSWVRALKS 103 (104)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
No 129
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.76 E-value=0.018 Score=55.31 Aligned_cols=90 Identities=22% Similarity=0.264 Sum_probs=62.9
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCC---CC---ceeEEEEEecCCCCCCCCC
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPY---NT---RVLDIIVFELLPTTNGKEG 299 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~---~~---~~~~v~l~D~~~~~~~~~~ 299 (1120)
|||.|+|.+. -...|++|||+|-+.-|+|.+ +. .+ .+...|-++
T Consensus 4 keG~L~K~~~-------------------~~~~~k~RyffLFnd~Ll~~~-~~~~~~~~~y~~~~~i~l~---------- 53 (101)
T cd01219 4 KEGSVLKISS-------------------TTEKTEERYLFLFNDLLLYCV-PRKMIGGSKFKVRARIDVS---------- 53 (101)
T ss_pred cceEEEEEec-------------------CCCCceeEEEEEeCCEEEEEE-cccccCCCcEEEEEEEecc----------
Confidence 8999987631 014699999999999999987 32 12 122222222
Q ss_pred CCeeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 300 PGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+.+... ...+..|+|.|...+|++.+.|.|..+-.+|+.+|..+.
T Consensus 54 -~~~v~~~--~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i 99 (101)
T cd01219 54 -GMQVCEG--DNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSII 99 (101)
T ss_pred -cEEEEeC--CCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 1222211 122467999999999999999999999999999999865
No 130
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.65 E-value=0.011 Score=66.52 Aligned_cols=140 Identities=21% Similarity=0.292 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhcchhhHHHHH
Q 001225 385 AAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKINSMYSKKRLL 464 (1120)
Q Consensus 385 ~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~s~~~k~~L~ 464 (1120)
..-+.+...|.+|++-|-| -+-++.+ ..-|.++|.++-+|||-||||| |+.....-+. .-.+-.+.
T Consensus 134 ~IKE~vR~~I~~A~kVIAI-------VMD~FTD-----~dIf~DLleAa~kR~VpVYiLL-D~~~~~~Fl~-Mc~~~~v~ 199 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKVIAI-------VMDVFTD-----VDIFCDLLEAANKRGVPVYILL-DEQNLPHFLE-MCEKLGVN 199 (284)
T ss_pred CHHHHHHHHHHHhcceeEE-------Eeecccc-----HHHHHHHHHHHHhcCCcEEEEe-chhcChHHHH-HHHHCCCC
Confidence 4567788999999999999 4677764 3566776665559999999998 5433211000 00000000
Q ss_pred -cccCCeEEEEcCCC---CCcc-cccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 001225 465 -KIHENVKVLRHPDH---VSTG-VYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDYYNPRESE 539 (1120)
Q Consensus 465 -~~~~nI~V~r~P~~---~~~~-~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d 539 (1120)
...+|++|.--... ..+| .+-..-++|+++||+..+..|+--.++- .
T Consensus 200 ~~~~~nmrVRsv~G~~y~~rsg~k~~G~~~eKF~lvD~~~V~~GSYSFtWs-----------------------~----- 251 (284)
T PF07894_consen 200 LQHLKNMRVRSVTGCTYYSRSGKKFKGQLKEKFMLVDGDKVISGSYSFTWS-----------------------S----- 251 (284)
T ss_pred hhhcCCeEEEEecCCeeecCCCCeeeCcccceeEEEecccccccccceeec-----------------------c-----
Confidence 01368887533211 1223 4567889999999999999999766520 0
Q ss_pred CCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHH
Q 001225 540 PNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRW 584 (1120)
Q Consensus 540 ~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrW 584 (1120)
..++ +-+...+.|.+|....+-|..-.
T Consensus 252 ---------~~~~---------r~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 252 ---------SRVH---------RNLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred ---------cccc---------cceeEEEeccccchHhHHHHHHH
Confidence 0111 13578899999999999997653
No 131
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=96.58 E-value=0.0076 Score=61.35 Aligned_cols=101 Identities=15% Similarity=0.246 Sum_probs=67.1
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEe--eeeE---E-EEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQY--KQFK---W-SLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGI 130 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~h--G~fk---W-tIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~ 130 (1120)
.++|.+-||.-+ . ...|++.++= -.|+ - .|+|+|+||..||.+|.... +.
T Consensus 31 ~i~Vtd~ek~G~--~---~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~------------~~------- 86 (140)
T cd06891 31 RVRVTGIERNKS--K---DPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGAN------------PE------- 86 (140)
T ss_pred EEEEeCceecCC--C---CeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHC------------CC-------
Confidence 689999999433 2 2456666532 2243 4 59999999999999887410 00
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccccCCCCcccccccc--cccccccHHHHHHHHHHHHHHHHHhhcccccchhccc
Q 001225 131 VDQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILR--PVLGKQTVAERAKVAMQGYLNHFMGNIDIVNSREVCK 208 (1120)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r--~~l~~~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~ 208 (1120)
-.+|+ ||--. -..+...+.++|+..||.||+.+..++.+....++..
T Consensus 87 ----------------------------~iVPp---lP~k~~~~~~~~~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~ 135 (140)
T cd06891 87 ----------------------------TFVPA---LPLPSTSYGSNNEEDARKLKANLQRWFNRVCSDPILIRDEELRF 135 (140)
T ss_pred ----------------------------cEeCC---CCCccccCCCCCHHHHHHHHHHHHHHHHHHhCChhhccCHHHHH
Confidence 01222 22100 0122236777888999999999999999999999999
Q ss_pred ccee
Q 001225 209 FLEV 212 (1120)
Q Consensus 209 FLEv 212 (1120)
|||-
T Consensus 136 FLEs 139 (140)
T cd06891 136 FIES 139 (140)
T ss_pred Hhcc
Confidence 9974
No 132
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.37 E-value=0.038 Score=54.81 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=65.6
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCC-------ceeEEEEEecCCCCCCC
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNT-------RVLDIIVFELLPTTNGK 297 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~-------~~~~v~l~D~~~~~~~~ 297 (1120)
.|||||.-++..-.. +++.. .-.+.|.++|.||+++-|.+.+|-... .+...|-++..
T Consensus 1 ~~~g~l~RK~~~~~~-----~kk~~----~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a------ 65 (117)
T cd01230 1 YKHGALMRKVHADPD-----CRKTP----FGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHA------ 65 (117)
T ss_pred CCCcEEEEEEEecCC-----CccCC----CCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccc------
Confidence 489999877642211 11111 012679999999999999998875421 11111212210
Q ss_pred CCCCeeecccccCCCCcceeEEEEeC-ceEEEEEecChhhHHHHHHHHHhhc
Q 001225 298 EGPGVYLASQVKGSNPLRYAFQVSCG-NRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..++.. ..+..++.|+|... ++.+.+.|.+...+..|+..|+.++
T Consensus 66 -~~~ia~-----dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 66 -LATRAS-----DYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred -eeEeec-----cccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 001111 22335688999886 4899999999999999999999876
No 133
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=96.27 E-value=0.053 Score=52.73 Aligned_cols=86 Identities=24% Similarity=0.332 Sum_probs=62.7
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecC-eEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPG-FLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds-~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
-.++|+|.|+++ .| .++|||+++|. -|.|++ |.++.+...|.++.. -.+
T Consensus 13 Il~~g~v~K~kg---------------l~------~kkR~liLTd~PrL~Yvd-p~~~~~KGeI~~~~~--------l~v 62 (104)
T PF14593_consen 13 ILKQGYVKKRKG---------------LF------AKKRQLILTDGPRLFYVD-PKKMVLKGEIPWSKE--------LSV 62 (104)
T ss_dssp EEEEEEEEEEET---------------TE------EEEEEEEEETTTEEEEEE-TTTTEEEEEE--STT---------EE
T ss_pred EEEEEEEEEeec---------------eE------EEEEEEEEccCCEEEEEE-CCCCeECcEEecCCc--------eEE
Confidence 469999998852 11 57999999999 999996 999999999988742 122
Q ss_pred eecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 303 YLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.. -...+|.|...+|+..|... ...+..|.++|++..
T Consensus 63 ~~--------k~~~~F~I~tp~RtY~l~d~-~~~A~~W~~~I~~~~ 99 (104)
T PF14593_consen 63 EV--------KSFKTFFIHTPKRTYYLEDP-EGNAQQWVEAIEEVK 99 (104)
T ss_dssp EE--------CSSSEEEEEETTEEEEEE-T-TS-HHHHHHHHHHHH
T ss_pred EE--------ccCCEEEEECCCcEEEEECC-CCCHHHHHHHHHHHH
Confidence 21 12347999999999999984 455888999999863
No 134
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=96.24 E-value=0.034 Score=61.23 Aligned_cols=95 Identities=24% Similarity=0.291 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhcchhhHH
Q 001225 382 DGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKINSMYSKK 461 (1120)
Q Consensus 382 DG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~s~~~k~ 461 (1120)
+-......+.+.|++|+++|+|..| ...-.+|.+.|++|++|||+|.++++.+... .
T Consensus 7 g~~~I~~~i~elI~~Ae~eI~is~~-------------~~~l~~l~~~L~~a~~rGV~V~li~~~~~~~-----~----- 63 (233)
T PF11495_consen 7 GRETILERIRELIENAESEIYISIP-------------PEFLEELRDELEEAVDRGVKVKLIVFGEDPD-----P----- 63 (233)
T ss_dssp SHHHHHHHHHHHHHC-SSEEEEEE--------------GGGHHHHHHHHHHHHHTT-EEEEEESS---------------
T ss_pred CHHHHHHHHHHHHHHhheEEEEEcC-------------HHHHHHHHHHHHHHHHCCCEEEEEEeCCCCC-----c-----
Confidence 4456889999999999999999755 1344689999999999999999999771110 0
Q ss_pred HHHcccCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCC
Q 001225 462 RLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLC 508 (1120)
Q Consensus 462 ~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~ 508 (1120)
.....+.+....++-. ..+--++|+|++-+++++.+..
T Consensus 64 ~~~~~~~~~~~vr~~~---------~~~~~~~ivD~~~~l~~~~~~~ 101 (233)
T PF11495_consen 64 EEFEYHGNATEVRVRR---------GGRPFMVIVDRKEALFAPSDML 101 (233)
T ss_dssp GGGTTSSEEEEEE-S------------S-EEEEETTTEEEEETTTTT
T ss_pred hhhhhcccccEEEEec---------CCCcEEEEEECCEEEEEecccc
Confidence 0111234444454421 1235579999999999998764
No 135
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.02 Score=63.30 Aligned_cols=106 Identities=18% Similarity=0.298 Sum_probs=64.3
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCC---CCCC-
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNG---KEGP- 300 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~---~~~~- 300 (1120)
..||+|.|.++. + ...|++||||+.|.||.|++.-.+..++.+|-.....--++ +..+
T Consensus 261 dREGWLlKlgg~-------------r-----vktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~VedP~kP~c 322 (395)
T KOG0930|consen 261 DREGWLLKLGGN-------------R-----VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPKKPNC 322 (395)
T ss_pred cccceeeeecCC-------------c-----ccchhheeEEeecceeeeeeeccCCCCCcceeccccceeeccCCCCCCe
Confidence 489999886321 1 15799999999999999998766667887776654321111 1111
Q ss_pred -Ceee----cccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 301 -GVYL----ASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 301 -~~~~----~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+++. |..+|.-..-..|=.+.-..-..++-+.+.....+|..+|..+.
T Consensus 323 fEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~i 375 (395)
T KOG0930|consen 323 FELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAI 375 (395)
T ss_pred EEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 1110 00111100112233344334466778889999999999999876
No 136
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.0094 Score=59.37 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=62.0
Q ss_pred CceeEEEEEEEeee--e---EEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCC
Q 001225 73 PMLLSYTIELQYKQ--F---KWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGA 147 (1120)
Q Consensus 73 ~~~~~YtIeL~hG~--f---kWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1120)
..+|.|.|-+.-.- | .=.|.|||+||--||.+|.+ + .
T Consensus 33 ~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler-----~--------------s------------------- 74 (144)
T KOG2527|consen 33 NRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLER-----E--------------S------------------- 74 (144)
T ss_pred ccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHH-----h--------------c-------------------
Confidence 35788988887633 2 23578999999999998875 1 0
Q ss_pred CCCCCCccccccCCCCcccccccccccccc----cHHHHHHHHHHHHHHHHHhhcccccchhccccceeccc
Q 001225 148 VPMHPSESVRNRYVPSMAALSILRPVLGKQ----TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSRL 215 (1120)
Q Consensus 148 ~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~----~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~l 215 (1120)
.+--+|. || ++.+-++ ++.+.|++.||.||+.++..+-.-+...|-.||+-...
T Consensus 75 ---------~kvvvP~---LP--gK~~~~~~~fre~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~~~ 132 (144)
T KOG2527|consen 75 ---------GKVVVPE---LP--GKALFRQLPFREFIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSELI 132 (144)
T ss_pred ---------ccccCCC---CC--cHHHHhcCchHHHHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhhhh
Confidence 0011233 44 2333332 56666668999999999998888788888888875544
No 137
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.88 E-value=0.39 Score=46.26 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=32.5
Q ss_pred cceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 314 LRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 314 ~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..|+|.|...++++.+.+.|..+..+|+.+|.++.
T Consensus 63 ~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 63 VPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred CceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999865
No 138
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.70 E-value=0.14 Score=49.11 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=58.6
Q ss_pred cceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCc--------eEEEEE
Q 001225 259 WHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN--------RSIKLR 330 (1120)
Q Consensus 259 w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------r~l~l~ 330 (1120)
-+.+|||+++++|.|++|-++...+.+|-.|..---++..++ -..+|-|.+.|.. +.|.|-
T Consensus 19 sK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf-----------~sk~~~FeLfnpd~rnvykd~k~lel~ 87 (110)
T cd01256 19 SKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGF-----------MSRNHKFALFYPDGRNVYKDYKQLELG 87 (110)
T ss_pred CcceEEEEecceeeeecccccccccceeeccccEEEeecccc-----------cCCCcEEEEEcCcccccccchheeeec
Confidence 357899999999999999888889999988853211111000 1134667777653 579999
Q ss_pred ecChhhHHHHHHHHHhhc
Q 001225 331 TTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 331 ~~s~~~~~~w~~~i~~~~ 348 (1120)
|.+...+.-|.++...++
T Consensus 88 ~~~~e~vdswkasflrag 105 (110)
T cd01256 88 CETLEEVDSWKASFLRAG 105 (110)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999998876
No 139
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.20 E-value=0.51 Score=46.29 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=59.1
Q ss_pred CCcceEEEEEecCeEEEEeCCCC---CceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCc--eEEEEEe
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYN---TRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN--RSIKLRT 331 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~---~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--r~l~l~~ 331 (1120)
..|+++|+||.+.=|++++...+ ..+..||-+|..|....-...++.-+ ..+...+=|+|.... +.+.|-+
T Consensus 18 ~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a----~~kDiP~IF~I~~~~~~~~lllLA 93 (112)
T cd01242 18 PGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRA----DAKEIPKIFQILYANEARDLLLLA 93 (112)
T ss_pred CCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeec----CcccCCeEEEEEeCCccceEEEEe
Confidence 36999999999999988875443 34667766665443111111222221 234456667776654 8999999
Q ss_pred cChhhHHHHHHHHHhhc
Q 001225 332 TNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 332 ~s~~~~~~w~~~i~~~~ 348 (1120)
.+..+-..|+.++....
T Consensus 94 ~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 94 PQTDEQNKWVSRLVKKI 110 (112)
T ss_pred CCchHHHHHHHHHHHhc
Confidence 99999999999987643
No 140
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=93.88 E-value=0.13 Score=52.23 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcccccchhcccccee
Q 001225 185 VAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 185 ~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
..||.||+.+...+.+++...+..|||.
T Consensus 113 a~lE~fL~Ria~HP~l~~d~~f~~FLe~ 140 (141)
T cd07291 113 QVHEVFLQRLSSHPSLSKDRNFHIFLEY 140 (141)
T ss_pred HHHHHHHHHHhhCCeeccCcchhhhccC
Confidence 4599999999999999999999999984
No 141
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=93.71 E-value=0.56 Score=46.50 Aligned_cols=103 Identities=23% Similarity=0.354 Sum_probs=57.5
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCC---CCCcee-----------EEEEEec
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDP---YNTRVL-----------DIIVFEL 290 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~---~~~~~~-----------~v~l~D~ 290 (1120)
.|||||+-++.--..| ... ..-.+.|+..|+||+.+.|.+.++. .++... .++-+..
T Consensus 1 ~keG~l~RK~~~~~~g------kk~---~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~ 71 (119)
T PF15410_consen 1 YKEGILMRKHELESGG------KKA---SRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHH 71 (119)
T ss_dssp --EEEEEEEEEEECTT------CC------S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT
T ss_pred CceEEEEEEEEEcCCC------CCc---CCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecc
Confidence 4899998776422211 000 0122689999999999999999872 222111 1122211
Q ss_pred CCCCCCCCCCCeeecccccCCCCcceeEEEEeC-ceEEEEEecChhhHHHHHHHHHhhc
Q 001225 291 LPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCG-NRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.....+ .+.+-.+|-|++... +....+.+.+...+.+|+..|+..+
T Consensus 72 ---------a~a~~a---~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 72 ---------ALAEIA---SDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp ----------EEEEE---TTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ---------eEEEeC---cccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 111111 122335678999876 5789999999999999999998754
No 142
>PF13918 PLDc_3: PLD-like domain
Probab=93.30 E-value=0.15 Score=54.08 Aligned_cols=61 Identities=23% Similarity=0.201 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhccCeEEEEeeeeccCCCCCh--hHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCC
Q 001225 783 SIHSAYCSLIESAEHFIYIENQFFISGLSGDE--TIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIP 848 (1120)
Q Consensus 783 sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~--~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P 848 (1120)
.=.+|.++.|..|++||||+=.=|+|.+.-.. .-...|-+||++++ =.|||+|++++..+.
T Consensus 82 ~DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~ID~ALR~AA-----~~R~V~VRlLIS~W~ 144 (177)
T PF13918_consen 82 LDLDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPVIDDALRRAA-----IERGVKVRLLISCWK 144 (177)
T ss_pred cHHHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchhHHHHHHHHH-----HHcCCeEEEEEeecC
Confidence 45689999999999999999888888642111 12233444544332 135999999999774
No 143
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.93 E-value=0.28 Score=60.03 Aligned_cols=91 Identities=22% Similarity=0.304 Sum_probs=64.3
Q ss_pred eeEEEEEEEe-----eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCC
Q 001225 75 LLSYTIELQY-----KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVP 149 (1120)
Q Consensus 75 ~~~YtIeL~h-----G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1120)
...|.|+-+- |...=+|+|||+||.-||..|.. . ++
T Consensus 128 ~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~-----~-------~p--------------------------- 168 (503)
T KOG2273|consen 128 YVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLS-----K-------YP--------------------------- 168 (503)
T ss_pred eEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHH-----H-------CC---------------------------
Confidence 5677776654 45667999999999999997763 1 00
Q ss_pred CCCCccccccCCCCccccccccccc----cc--ccHHHHHHHHHHHHHHHHHhhcccccchhccccceeccc
Q 001225 150 MHPSESVRNRYVPSMAALSILRPVL----GK--QTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSRL 215 (1120)
Q Consensus 150 ~~~~~~~~~r~~Ps~~~lp~~r~~l----~~--~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~l 215 (1120)
...+|+ +|.-.... ++ ..+.++||+.|+.||+.+...+.+.+...+..||+....
T Consensus 169 --------~~~iPp---lP~k~~~~~~~~~~~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~~ 229 (503)
T KOG2273|consen 169 --------GRIIPP---LPEKSIVGSKSGDSFSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDSK 229 (503)
T ss_pred --------CCeeCC---CCchhhhhccccCCCCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhccccc
Confidence 122333 23211111 11 157788889999999999999999999999999998854
No 144
>PLN03008 Phospholipase D delta
Probab=92.73 E-value=0.49 Score=60.32 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhceEEEEeeecCCceEEEEcC----------CCCCchHHHHHHHHHH--hhCCcEEEEEEcc
Q 001225 385 AAFEAIASAIKNAKSQILITGWWLCPELYLIRP----------FENHPSSRLDALLEEK--AKEGIQVYILLYK 446 (1120)
Q Consensus 385 ~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp----------~~~~~~~rL~~lL~~k--A~rGVkVrILvyd 446 (1120)
....+.++||++||+.|||.. ++|+-.- .....+..|...|.+| +.++-+|+|++--
T Consensus 567 SIq~aYi~aIr~A~hFIYIEN-----QYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~ 635 (868)
T PLN03008 567 SIQTAYIQTIRSAQHFIYIEN-----QYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPL 635 (868)
T ss_pred hHHHHHHHHHHhhccEEEEeh-----hhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 457999999999999999963 2222211 0012334555555554 4568899998744
No 145
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.58 E-value=1.7 Score=42.35 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=55.3
Q ss_pred ccCCcceEEEEEecCeEEEEeCCCCCc-eeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecC
Q 001225 255 CSNKWHKVWAVLKPGFLVLLEDPYNTR-VLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTN 333 (1120)
Q Consensus 255 ~~~~w~krW~vvkds~l~y~~d~~~~~-~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s 333 (1120)
|..+.++|+|++=+..|+|-+---.++ ...=-+++. ..+.+.. +....+.+++|.|.+..++..+.|.|
T Consensus 14 ~rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L---------~~~~v~~-~~d~~~~~n~f~I~~~~kSf~v~A~s 83 (104)
T cd01218 14 CRKKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPL---------EGVQVES-IEDDGIERNGWIIKTPTKSFAVYAAT 83 (104)
T ss_pred ecCCCceEEEEEecCEEEEEEeecCCceeeEeeEEEc---------cceEEEe-cCCcccccceEEEecCCeEEEEEcCC
Confidence 335567789999999999975211121 111112221 0122211 11223468999999999999999999
Q ss_pred hhhHHHHHHHHHhhc
Q 001225 334 SGKVKEWVAAINDAG 348 (1120)
Q Consensus 334 ~~~~~~w~~~i~~~~ 348 (1120)
..+-.+|+.+|+++.
T Consensus 84 ~~eK~eWl~~i~~ai 98 (104)
T cd01218 84 ETEKREWMLHINKCV 98 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 146
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=92.45 E-value=0.46 Score=60.36 Aligned_cols=56 Identities=25% Similarity=0.403 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCC-----CCCchHHHHHHHHHHhh--CCcEEEEEE
Q 001225 384 QAAFEAIASAIKNAKSQILITGWWLCPELYLIRPF-----ENHPSSRLDALLEEKAK--EGIQVYILL 444 (1120)
Q Consensus 384 ~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~-----~~~~~~rL~~lL~~kA~--rGVkVrILv 444 (1120)
...-.|-..+|++|++.|||.. ++||-.-. ....+..|..-+.+|-+ +--+|||++
T Consensus 565 ~SIq~AYv~~Ir~a~hFIYIEN-----QfFi~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVI 627 (887)
T KOG1329|consen 565 DSIQNAYVKAIRNAEHFIYIEN-----QFFIGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVI 627 (887)
T ss_pred HHHHHHHHHHHHhccceEEEee-----eeEEeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 4577888999999999999964 45554421 11233344433344444 457788887
No 147
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=92.32 E-value=1.4 Score=49.95 Aligned_cols=161 Identities=16% Similarity=0.204 Sum_probs=93.3
Q ss_pred CcceEEEeecCcccCCCCCCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeE
Q 001225 760 LACRCQIIRSVSQWSAGTSQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFR 839 (1120)
Q Consensus 760 ~~~~vQilRS~~~WS~G~~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~ 839 (1120)
|..+++|.=--|. ..-.+|.+.-.++|++|++-|=|----|.-. .|..-|.++ + .+|+|-
T Consensus 117 g~Tr~~vy~qPp~------~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~---------dIf~DLleA----a-~kR~Vp 176 (284)
T PF07894_consen 117 GVTRATVYFQPPK------DGQPHIKEVVRRMIQQAQKVIAIVMDVFTDV---------DIFCDLLEA----A-NKRGVP 176 (284)
T ss_pred CCceEEEEeCCCC------CCCCCHHHHHHHHHHHhcceeEEEeeccccH---------HHHHHHHHH----H-HhcCCc
Confidence 4456666543211 1234799999999999999999987667643 344444442 1 367999
Q ss_pred EEEEecCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCcc--ceeeEeeeccccccCCCCCccccc
Q 001225 840 VIVVLPLIPGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTR--DYISFYGLRSYGRLCDGGPVATSQ 917 (1120)
Q Consensus 840 V~IVlP~~P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~--~Yi~f~~Lr~~~~~~~~g~~vte~ 917 (1120)
|||++... .+... -.|| .+ ++++.. ..+++-+++.-.-....|.-++.
T Consensus 177 VYiLLD~~-------------~~~~F-----l~Mc----------~~-~~v~~~~~~nmrVRsv~G~~y~~rsg~k~~G- 226 (284)
T PF07894_consen 177 VYILLDEQ-------------NLPHF-----LEMC----------EK-LGVNLQHLKNMRVRSVTGCTYYSRSGKKFKG- 226 (284)
T ss_pred EEEEechh-------------cChHH-----HHHH----------HH-CCCChhhcCCeEEEEecCCeeecCCCCeeeC-
Confidence 99999743 11111 1222 12 444432 12222111100000001111111
Q ss_pred eeeeeeEEEEeccEEEEcccccccCCCCCCCCceeeEEEEccchhhcccCCCCcchhhhHHHHHHHHHH
Q 001225 918 VYVHSKVMIIDDRAALIGSSNINDRSLLGSRDSEIDVVIEDKEFLESSMNGEPWKAGKFSHSLRCFLWA 986 (1120)
Q Consensus 918 iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~~v~s~M~G~~~~agkfa~~LR~~L~~ 986 (1120)
-++.|.||||.+.|+.||.-+..-|- ..|.-+..++... .| -.|-.++|. |++
T Consensus 227 -~~~eKF~lvD~~~V~~GSYSFtWs~~--~~~r~~~~~~tGq-~V-----------e~FD~EFR~-LyA 279 (284)
T PF07894_consen 227 -QLKEKFMLVDGDKVISGSYSFTWSSS--RVHRNLVTVLTGQ-IV-----------ESFDEEFRE-LYA 279 (284)
T ss_pred -cccceeEEEecccccccccceeeccc--ccccceeEEEecc-cc-----------chHhHHHHH-HHH
Confidence 58999999999999999999988776 3666666665543 23 348888886 555
No 148
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=91.98 E-value=0.28 Score=49.80 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 182 RAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 182 rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
+++..||-|||.+...+.+++...+..|||.
T Consensus 110 k~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 110 KTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 4457899999999999999999999999985
No 149
>PLN02352 phospholipase D epsilon
Probab=91.38 E-value=1.3 Score=56.24 Aligned_cols=57 Identities=25% Similarity=0.312 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhccCeEEEEeeeeccCC----CCC----hhHHHHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 001225 782 GSIHSAYCSLIESAEHFIYIENQFFISGL----SGD----ETIQNRILEALYRRIMRAYKEQKYFRVIVVL 844 (1120)
Q Consensus 782 ~sI~~ayl~aI~~A~h~IYIEnQyFis~~----~~~----~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVl 844 (1120)
.....++.+||.+|+|+|||+.=-|-+.. .+. ...-..+++.|.++ +++||+|+|++
T Consensus 186 ~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~K------A~eGV~VrLLv 250 (758)
T PLN02352 186 RKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRK------AEEGVAVRVML 250 (758)
T ss_pred HHHHHHHHHHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHH------HHCCCEEEEEE
Confidence 47999999999999999999974444421 010 01235677777664 45699999984
No 150
>PLN02270 phospholipase D alpha
Probab=91.36 E-value=0.32 Score=61.73 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.2
Q ss_pred ccCcceEEEEeCCeEEEccccCCC
Q 001225 486 WSHHEKLVIVDYRISFIGGLDLCF 509 (1120)
Q Consensus 486 ~rhH~KivVID~~vAFvGGinL~~ 509 (1120)
---|.|++|||+.++.+|+.||..
T Consensus 656 I~vH~K~~ivDd~~~~iGSaN~n~ 679 (808)
T PLN02270 656 IYVHTKMMIVDDEYIIIGSANINQ 679 (808)
T ss_pred EEEeeeEEEEcCCEEEEecccccc
Confidence 346999999999999999999963
No 151
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.34 E-value=1.4 Score=43.90 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=54.6
Q ss_pred CCcceEEEEEecCeEEEEeCCCC--CceeEE--EEEec---CCCCCCCCCCCeeecccccCCCCcceeEEEEeC------
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYN--TRVLDI--IVFEL---LPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCG------ 323 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~--~~~~~v--~l~D~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------ 323 (1120)
..|+++|+||.|.=|.+++...+ .++..+ +.+|. .|....-...++.- ...+...+=|+|+..
T Consensus 18 rGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~----a~~kDiP~If~I~~~~~~~~~ 93 (122)
T cd01243 18 KGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIH----ASKKDIPCIFRVTTSQISASS 93 (122)
T ss_pred cCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccc----cCcccCCeEEEEEEecccCCC
Confidence 35999999999999988874432 233333 33443 22211000011111 123456677778764
Q ss_pred -ceEEEEEecChhhHHHHHHHHHhh
Q 001225 324 -NRSIKLRTTNSGKVKEWVAAINDA 347 (1120)
Q Consensus 324 -~r~l~l~~~s~~~~~~w~~~i~~~ 347 (1120)
..++.+-+.|...-.+|+.+++++
T Consensus 94 ~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 94 SKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred CccEEEEEeCCchHHHHHHHHHHHH
Confidence 378899999999999999999886
No 152
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=90.21 E-value=0.5 Score=48.37 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.2
Q ss_pred HHHHHHHHhhcccccchhcccccee
Q 001225 188 QGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 188 E~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
|.||+.+-..+-+++...+..|||.
T Consensus 116 e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 116 EVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred HHHHHHhccCCeeecCHhHHhhhcC
Confidence 5799999988888999999999985
No 153
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.45 E-value=0.61 Score=45.88 Aligned_cols=95 Identities=24% Similarity=0.360 Sum_probs=60.2
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEE---EEecCCCCCCCCCCCe
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDII---VFELLPTTNGKEGPGV 302 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~---l~D~~~~~~~~~~~~~ 302 (1120)
.||+|..|.- | ...|+|+||++|-|-|-|+-.-.+...+|.. .|+. .+|
T Consensus 2 ~~g~LylK~~----g---------------kKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~---------~nv 53 (114)
T cd01259 2 MEGPLYLKAD----G---------------KKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHG---------HNV 53 (114)
T ss_pred ccceEEEccC----C---------------CccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhccc---------CcE
Confidence 5899988741 1 0579999999999999998533333444332 3432 234
Q ss_pred eeccc--ccCCCCcceeEEEE-----e-CceEEEEEecC-hhhHHHHHHHHHhhc
Q 001225 303 YLASQ--VKGSNPLRYAFQVS-----C-GNRSIKLRTTN-SGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~--~~~~~~~~~~~~i~-----~-~~r~l~l~~~s-~~~~~~w~~~i~~~~ 348 (1120)
..+-. .+-..|+.|+|.|. + +++.|+.-|.. ......|+.+|+-+-
T Consensus 54 Y~~~~~kKk~kAPTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 54 YTGLGWRKKYKSPTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred EEEechhhccCCCCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 43321 12234678898873 2 35777777754 455688999998653
No 154
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=89.29 E-value=0.88 Score=56.41 Aligned_cols=151 Identities=19% Similarity=0.313 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhhcc-cccchhcccccee-cccccccccCC---c-ceeeEEEEEeccCCCCCCCCCcccccccccccC
Q 001225 184 KVAMQGYLNHFMGNID-IVNSREVCKFLEV-SRLSFSEEYGP---K-LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSN 257 (1120)
Q Consensus 184 r~~LE~YL~~LL~~~~-~~~~~~l~~FLEv-S~lsf~~~~G~---K-gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1120)
..-+|.|+..+.+... ...--.+..|||. |..+-...+++ - .|||.+.++-.++. . | ...
T Consensus 519 ~s~kE~~~~~v~~~v~~e~~~~~~~~fld~is~~~~~~~~~p~~p~v~k~glm~kr~~gr~-----------~-~--~~~ 584 (800)
T KOG2059|consen 519 ESWKEPLMPTVFETVTEEQHFIAVKVFLDEISSVGDRSSLSPQEPVVLKEGLMIKRAQGRG-----------R-F--GKK 584 (800)
T ss_pred hhhhhhhhHHHHHHHHHhHhHHHHHhhhhcccccccccccCCCCCceecccceEecccccc-----------c-h--hhh
Confidence 4567888888886653 3456667788864 55555545554 2 45555444321111 0 1 113
Q ss_pred CcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeeccccc-CCCCcceeEEEEeCceEEEEEecChhh
Q 001225 258 KWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVK-GSNPLRYAFQVSCGNRSIKLRTTNSGK 336 (1120)
Q Consensus 258 ~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~r~l~l~~~s~~~ 336 (1120)
..+||||-+...-|.|-++|....+..|=|=+-.+ ..... ++=..+|-|+|....|++.+.|++--+
T Consensus 585 ~FKKryf~LT~~~Ls~~Ksp~~q~~~~Ipl~nI~a------------vEklee~sF~~knv~qVV~~drtly~Q~~n~vE 652 (800)
T KOG2059|consen 585 NFKKRYFRLTTEELSYAKSPGKQPIYTIPLSNIRA------------VEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVE 652 (800)
T ss_pred hhhheEEEeccceeEEecCCccCcccceeHHHHHH------------HHHhhhhccCCCceEEEEecCcceeEecCCchH
Confidence 56799999999999999999877766654433211 00000 112346779998888999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 001225 337 VKEWVAAINDAGLRPLEGWCHPHRFGSYAP 366 (1120)
Q Consensus 337 ~~~w~~~i~~~~~~~~~~~~~~~rf~sfap 366 (1120)
+.+|+.+|..... +..+|..+|-|
T Consensus 653 andWldaL~kvs~------~N~~rLas~HP 676 (800)
T KOG2059|consen 653 ANDWLDALRKVSC------CNQNRLASYHP 676 (800)
T ss_pred HHHHHHHHHHHhc------cCcchhhhcCC
Confidence 9999999988763 23456655554
No 155
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.24 E-value=0.5 Score=45.77 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=48.0
Q ss_pred CCcceEEEEEec----CeEEEEeCCCCCceeEEEEEecCCCCC------CCCCCCeeecccccCCCCcceeEEEEeCceE
Q 001225 257 NKWHKVWAVLKP----GFLVLLEDPYNTRVLDIIVFELLPTTN------GKEGPGVYLASQVKGSNPLRYAFQVSCGNRS 326 (1120)
Q Consensus 257 ~~w~krW~vvkd----s~l~y~~d~~~~~~~~v~l~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~ 326 (1120)
.+|+||||+++. .|.++--.-....+.+.+-+|. +..+ .+-.+++. -.+-++=|.-.-.+..
T Consensus 17 KkWKKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldG-yTvDy~~~~~~~~~~~~~-------~~gg~~ff~avkegd~ 88 (117)
T cd01234 17 KKWKKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDG-YTVDYMPESDPDPNSELS-------LQGGRHFFNAVKEGDE 88 (117)
T ss_pred hhhheeEEEEEchhHHHHHHHhhhhhcCCchhheeecc-eEEeccCCCCCCcccccc-------cccchhhhheeccCcE
Confidence 689999999985 2333321122334556665553 2111 10001111 1123444555555678
Q ss_pred EEEEecChhhHHHHHHHHHhhc
Q 001225 327 IKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 327 l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+++-|.++-.-.-|++++-.+.
T Consensus 89 ~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 89 LKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred EEEeccchHHHHHHHHHHHHHc
Confidence 9999988888888999998864
No 156
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=88.20 E-value=2.3 Score=41.44 Aligned_cols=32 Identities=9% Similarity=0.322 Sum_probs=28.6
Q ss_pred eeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHH
Q 001225 75 LLSYTIELQY-KQFKWSLVKKASQILYLHFAVKK 107 (1120)
Q Consensus 75 ~~~YtIeL~h-G~fkWtIkrk~k~f~~LH~~Lk~ 107 (1120)
.++|.|.++- |. .|.|+|.|-||..|...|.+
T Consensus 25 ~~~flv~V~cqgr-sW~v~RSyEdfr~LD~~LHr 57 (113)
T cd07299 25 DLVFLVQVTCQGR-SWMVLRSYEDFRTLDAHLHR 57 (113)
T ss_pred ceEEEEEEEecCc-ceEEeeeHHHHHHHHHHHHH
Confidence 5799999996 66 99999999999999987764
No 157
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=87.99 E-value=1.1 Score=58.34 Aligned_cols=86 Identities=23% Similarity=0.374 Sum_probs=60.5
Q ss_pred eeEEEEEEEe-ee-eEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCC
Q 001225 75 LLSYTIELQY-KQ-FKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHP 152 (1120)
Q Consensus 75 ~~~YtIeL~h-G~-fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (1120)
...|.||+++ |+ -.=-|.|.|.+|..||.+|+.+- |+
T Consensus 1392 ~YmYvveV~r~n~~e~s~i~RsF~EF~ElH~KL~~~F---------------------------------------p~-- 1430 (1639)
T KOG0905|consen 1392 IYMYVVEVTRENQAEPSFIFRSFEEFQELHNKLRARF---------------------------------------PS-- 1430 (1639)
T ss_pred eEEEEEEEEecCCCCchHHHHhHHHHHHHHHHHHHhC---------------------------------------cc--
Confidence 4789999998 44 33447899999999999888511 10
Q ss_pred CccccccCCCCcccccccccccccc---cHHHHHHHHHHHHHHHHHhhcc-cccchhccccce
Q 001225 153 SESVRNRYVPSMAALSILRPVLGKQ---TVAERAKVAMQGYLNHFMGNID-IVNSREVCKFLE 211 (1120)
Q Consensus 153 ~~~~~~r~~Ps~~~lp~~r~~l~~~---~~~~rrr~~LE~YL~~LL~~~~-~~~~~~l~~FLE 211 (1120)
-.+|+ +|. +=.+||. .+++||+..|+.||..|+..+. +.+..-++-||.
T Consensus 1431 ------~~Lp~---fP~-~~~~grsnikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFh 1483 (1639)
T KOG0905|consen 1431 ------MKLPS---FPH-RIHLGRSNIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFH 1483 (1639)
T ss_pred ------ccCCC---CCc-eeeecccchhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeeec
Confidence 01122 221 2235554 6889999999999999997754 678888888864
No 158
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=82.70 E-value=13 Score=40.12 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=67.9
Q ss_pred EEEEecHH--HHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhh
Q 001225 377 AQWFIDGQ--AAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKI 454 (1120)
Q Consensus 377 v~~lvDG~--~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~ 454 (1120)
.++..+|. -...++...|+.|++-..+. .|+-. ++ -.-|.+.|..+...||++|||--+..... -
T Consensus 29 ~~li~n~~ne~il~~Li~~l~k~~ef~IsV-------aFit~---sG-~sll~~~L~d~~~Kgvkgkilts~YlnfT--d 95 (198)
T COG3886 29 PKLISNGYNEKILPRLIDELEKADEFEISV-------AFITE---SG-LSLLFDLLLDLVNKGVKGKILTSDYLNFT--D 95 (198)
T ss_pred ceeeeCCCchhHHHHHHHHHhcCCeEEEEE-------EEeeC---cc-HHHHHHHHHHHhcCCceEEEecccccCcc--C
Confidence 44555554 58899999999999977774 35543 23 35677888899999999999975543221 1
Q ss_pred cchhhHHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEe---CCeEEEccccCC
Q 001225 455 NSMYSKKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVD---YRISFIGGLDLC 508 (1120)
Q Consensus 455 ~s~~~k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID---~~vAFvGGinL~ 508 (1120)
+..+ ++|. ...|+++.-+-.. ...+|-|-.|.- +-.|++|+.|++
T Consensus 96 P~al--~~Ll-~~~nve~r~~~~~------~~~fH~KgYiFe~~~~~taiiGSsNlt 143 (198)
T COG3886 96 PVAL--RKLL-MLKNVELRVSTIG------SANFHTKGYIFEHNTGITAIIGSSNLT 143 (198)
T ss_pred HHHH--HHHH-hhhccceEEEecC------ccccccceeEEEecceEEEEEccchhh
Confidence 1122 2332 2356776544210 123455544432 235999999997
No 159
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=81.46 E-value=6 Score=43.67 Aligned_cols=51 Identities=24% Similarity=0.211 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecC
Q 001225 781 EGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPL 846 (1120)
Q Consensus 781 E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~ 846 (1120)
...|.+-..++|++|++.|||.... .....+.++|.+ | .++||+|.+++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~---------~~l~~l~~~L~~----a--~~rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPP---------EFLEELRDELEE----A--VDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-G---------GGHHHHHHHHHH----H--HHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCH---------HHHHHHHHHHHH----H--HHCCCEEEEEEeC
Confidence 5689999999999999999998632 112245555544 3 3569999999975
No 160
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.20 E-value=21 Score=35.38 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=53.9
Q ss_pred CcceEEEEEecCeEEEEeCCCCC------------ceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeC-c
Q 001225 258 KWHKVWAVLKPGFLVLLEDPYNT------------RVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCG-N 324 (1120)
Q Consensus 258 ~w~krW~vvkds~l~y~~d~~~~------------~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~ 324 (1120)
.++.|.|.|=|.-|+|++ +... ..+..|-++. +.+.. .....+.+|+|.|.+. +
T Consensus 19 ~~q~R~~FLFd~~Li~CK-~~~~~~~~~g~~~~~y~~k~~~~l~~-----------~~V~d-~~d~~~~knaF~I~~~~~ 85 (112)
T cd01261 19 AKHERHVFLFDGLMVLCK-SNHGQPRLPGASSAEYRLKEKFFMRK-----------VDIND-KPDSSEYKNAFEIILKDG 85 (112)
T ss_pred CcceEEEEEecCeEEEEE-eccCcccccccccceEEEEEEEeeee-----------eEEEE-cCCCcccCceEEEEcCCC
Confidence 457899999999999997 4332 1223333321 22211 1112246899999985 7
Q ss_pred eEEEEEecChhhHHHHHHHHHhhc
Q 001225 325 RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 325 r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+++.+-|++..+-.+|++++..+.
T Consensus 86 ~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 86 NSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHh
Confidence 899999999999999999998764
No 161
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=80.30 E-value=18 Score=46.29 Aligned_cols=138 Identities=19% Similarity=0.242 Sum_probs=86.3
Q ss_pred HHHHHHHHhhccc--ccchhccccceecccccccccCCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEE
Q 001225 188 QGYLNHFMGNIDI--VNSREVCKFLEVSRLSFSEEYGPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAV 265 (1120)
Q Consensus 188 E~YL~~LL~~~~~--~~~~~l~~FLEvS~lsf~~~~G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~v 265 (1120)
|+-|..+|+...+ ..+--|.+|+.-..+-|-.+.-..-|+|.|+++-- +| +- .-+.+.+.|+||
T Consensus 992 ekvleqvLqw~~l~csa~lvvkkh~~~q~~~~~~dr~gs~k~G~lKirEe----~s----rl------l~g~~fqdryfi 1057 (1186)
T KOG1117|consen 992 EKVLEQVLQWSSLACSAYLVVKKHLTAQAIKHCSDRLGSIKEGILKIREE----PS----RL------LSGNKFQDRYFI 1057 (1186)
T ss_pred HHHHHHHHhhhccCCcceEEeehhhhHhhhchhhhcccCcccceEEeccC----cc----cc------ccCCccceEEEE
Confidence 4445555555333 23444445544444443333322458888877632 10 00 012467889999
Q ss_pred EecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHH
Q 001225 266 LKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAIN 345 (1120)
Q Consensus 266 vkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~ 345 (1120)
++++||+.+++-.+.+- |..+.++ ...+++|-..|-+.++-.||..-.......|.|.+.+...+|+..|-
T Consensus 1058 lng~~l~lyke~KssKh------ek~wpl~---s~k~Y~GvkkklKpPt~wg~T~i~ekhh~~l~cd~s~~~~ewfts~f 1128 (1186)
T KOG1117|consen 1058 LNGGCLFLYKEVKSSKH------EKEWPLS---SMKVYLGVKKKLKPPTSWGFTAISEKHHWYLCCDSSSEQTEWFTSIF 1128 (1186)
T ss_pred ecCcEEEEeehhhcccc------ccccccc---cceEEeccccccCCCCccceeeeeecceEEEecCCccccchhhhhhh
Confidence 99999999987766652 3222222 23456665445556778899888777889999999999999999987
Q ss_pred hhc
Q 001225 346 DAG 348 (1120)
Q Consensus 346 ~~~ 348 (1120)
.+.
T Consensus 1129 kaq 1131 (1186)
T KOG1117|consen 1129 KAQ 1131 (1186)
T ss_pred hhh
Confidence 754
No 162
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=80.13 E-value=7.1 Score=45.61 Aligned_cols=94 Identities=29% Similarity=0.473 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeE
Q 001225 819 RILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISF 898 (1120)
Q Consensus 819 ~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f 898 (1120)
.|.+||.+ |+++ |=+|.|++-+..-|+..-+ ++|. ++|.+ +|+.+ +
T Consensus 51 ~iv~aLi~----AA~n--GK~Vtv~vELkARFDEe~N----------i~Wa------------~~Le~-aGv~V-----i 96 (352)
T PF13090_consen 51 PIVNALIE----AAEN--GKQVTVLVELKARFDEENN----------IHWA------------KRLEE-AGVHV-----I 96 (352)
T ss_dssp HHHHHHHH----HHHT--T-EEEEEESTTSSSTTCCC----------CCCC------------HHHHH-CT-EE-----E
T ss_pred HHHHHHHH----HHHc--CCEEEEEEEEeccccHHHH----------hHHH------------hhHHh-cCeEE-----E
Confidence 57778765 4444 7788888888776743221 1222 45666 78765 4
Q ss_pred eeeccccccCCCCCccccceeeeeeEEEEec-------cEEEEcccccccCCCCCCCCceeeEEEEccchh
Q 001225 899 YGLRSYGRLCDGGPVATSQVYVHSKVMIIDD-------RAALIGSSNINDRSLLGSRDSEIDVVIEDKEFL 962 (1120)
Q Consensus 899 ~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD-------~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~~v 962 (1120)
|++. | +-||||+++|=- +++-+|+.|.|...-. .=+-+++..-|++..
T Consensus 97 yG~~--------g------lKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr--~YtD~~l~Ta~~~i~ 151 (352)
T PF13090_consen 97 YGVP--------G------LKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTAR--IYTDLSLFTADPEIG 151 (352)
T ss_dssp E--T--------T-------EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCC--CEEEEEEEE--HHHH
T ss_pred cCCC--------C------hhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchh--heecceeecCCHHHH
Confidence 4542 2 479999999742 8999999999999873 778888888777643
No 163
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=79.73 E-value=7.8 Score=38.04 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=30.0
Q ss_pred eeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHH
Q 001225 75 LLSYTIELQYKQFKWSLVKKASQILYLHFAVKK 107 (1120)
Q Consensus 75 ~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~ 107 (1120)
.++|.|.++-+.=.|.|||.|-+|..|...|.+
T Consensus 26 ~~~~~v~V~cqg~sW~VkRSyEdfr~LD~~LHr 58 (114)
T cd07278 26 ELVYLVQVQCQGKSWLVKRSYDDFRMLDKHLHQ 58 (114)
T ss_pred ceEEEEEEEeCCcceEEEeeHHHHHHHHHHHHH
Confidence 579999999988999999999999999987764
No 164
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=79.20 E-value=9.3 Score=47.67 Aligned_cols=88 Identities=28% Similarity=0.414 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhce---EEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEE-----cccchhhhhh
Q 001225 383 GQAAFEAIASAIKNAKS---QILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILL-----YKEVSIALKI 454 (1120)
Q Consensus 383 G~~yf~al~~aI~~Ak~---~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILv-----yd~~~~al~~ 454 (1120)
.-+.|..+.+-|++|-. .+-| -+-|+|- +...++.++|.+||+.|-+|-+|| +||- -
T Consensus 350 PYeSF~~Vv~fl~qAA~DP~VLAI-------KqTLYRt---~~dSpIV~ALi~AA~nGKqVtvlVELkARFDEE-----~ 414 (696)
T COG0855 350 PYESFEPVVEFLRQAAADPDVLAI-------KQTLYRT---SKDSPIVRALIDAAENGKQVTVLVELKARFDEE-----A 414 (696)
T ss_pred chhhhHHHHHHHHHhhcCCCeEEE-------EEEEEec---CCCCHHHHHHHHHHHcCCeEEEEEEEhhhcChh-----h
Confidence 34567888899999853 4444 4456663 345789999999999999999997 3321 1
Q ss_pred cchhhHHHHHcccCCeEEEEcCCCCCcccccccCcceEEEE
Q 001225 455 NSMYSKKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIV 495 (1120)
Q Consensus 455 ~s~~~k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVI 495 (1120)
|-.|. +.|.. +|++|. | |..-+--|.|+++|
T Consensus 415 NI~WA-k~LE~--AGvhVv-y------G~~glKtHAKm~lV 445 (696)
T COG0855 415 NIHWA-KRLER--AGVHVV-Y------GVVGLKTHAKMLLV 445 (696)
T ss_pred hhHHH-HHHHh--CCcEEE-e------cccceeeeeeEEEE
Confidence 22343 45543 899986 2 22346789999988
No 165
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=76.76 E-value=11 Score=37.30 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=28.3
Q ss_pred eeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHH
Q 001225 75 LLSYTIELQYKQFKWSLVKKASQILYLHFAVKK 107 (1120)
Q Consensus 75 ~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~ 107 (1120)
-++|.|.++-..=.|.|+|.|-||..|...|.+
T Consensus 27 e~~~~v~v~Cqgrsw~VkRSyEdfr~LD~~LHr 59 (115)
T cd07298 27 ELVYLVQIACQGRSWIVKRSYEDFRVLDKHLHL 59 (115)
T ss_pred CeEEEEEEEeCCCceEEEeeHHHHHHHHHHHHH
Confidence 478999888855599999999999999987764
No 166
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=76.62 E-value=1.4 Score=53.49 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=70.2
Q ss_pred cccccCCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCC
Q 001225 217 FSEEYGPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNG 296 (1120)
Q Consensus 217 f~~~~G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~ 296 (1120)
|+.+.|-...||-|+-++ ++|+. ..||+.|||-+..--|.|-+. .++.-++---+|..
T Consensus 728 Fvn~~gqp~iEGQLKEKK----------GrWRf------~kRW~TrYFTLSgA~L~~~kg-~s~~dS~~~~IDl~----- 785 (851)
T KOG3723|consen 728 FVNQDGQPLIEGQLKEKK----------GRWRF------IKRWKTRYFTLSGAQLLFQKG-KSKDDSDDCPIDLS----- 785 (851)
T ss_pred eecCCCCchhcchhhhhc----------cchhh------hhhhccceEEecchhhhcccC-CCCCCCCCCCccHH-----
Confidence 666777779999876443 33431 279999999999999999542 22211111112221
Q ss_pred CCCCCee-ecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 297 KEGPGVY-LASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 297 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.--.|+ +++. +.+..++..|.|.....+++||+++...+.+|++.+.-+.
T Consensus 786 -~IRSVk~v~~k-r~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~Iav 836 (851)
T KOG3723|consen 786 -KIRSVKAVAKK-RRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAV 836 (851)
T ss_pred -HhhhHHHHHhh-hhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHH
Confidence 001111 3321 2233467889999999999999999999999998887654
No 167
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=73.50 E-value=9.5 Score=44.60 Aligned_cols=120 Identities=28% Similarity=0.316 Sum_probs=70.3
Q ss_pred HHHHHHhhc-----eEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEE-----cccchhhhhhcchhh
Q 001225 390 IASAIKNAK-----SQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILL-----YKEVSIALKINSMYS 459 (1120)
Q Consensus 390 l~~aI~~Ak-----~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILv-----yd~~~~al~~~s~~~ 459 (1120)
+.+-|++|- .+|.|| |.|- .....+.++|.+||+.|-+|.++| +||- -|-.|.
T Consensus 23 vv~fl~eAA~DP~V~aIk~T---------LYR~---a~~S~iv~aLi~AA~nGK~Vtv~vELkARFDEe-----~Ni~Wa 85 (352)
T PF13090_consen 23 VVDFLREAAEDPDVLAIKIT---------LYRV---ASNSPIVNALIEAAENGKQVTVLVELKARFDEE-----NNIHWA 85 (352)
T ss_dssp HHHHHHHHCC-TTEEEEEEE---------ESSS----TT-HHHHHHHHHHHTT-EEEEEESTTSSSTTC-----CCCCCC
T ss_pred HHHHHHHHhcCCCccEEEEE---------EEec---CCCCHHHHHHHHHHHcCCEEEEEEEEeccccHH-----HHhHHH
Confidence 445566663 366663 4452 335799999999999999999997 3331 122344
Q ss_pred HHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEe-------CCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCC
Q 001225 460 KKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVD-------YRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDY 532 (1120)
Q Consensus 460 k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID-------~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY 532 (1120)
+.|.. +|++|..- ...+--|-|+++|= ..++++|-=|.
T Consensus 86 -~~Le~--aGv~ViyG-------~~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNy------------------------- 130 (352)
T PF13090_consen 86 -KRLEE--AGVHVIYG-------VPGLKVHAKICLIVRREGGGLRRYAHLGTGNY------------------------- 130 (352)
T ss_dssp -HHHHH--CT-EEEE---------TT-EE--EEEEEEEEETTEEEEEEEEESS-S-------------------------
T ss_pred -hhHHh--cCeEEEcC-------CCChhheeeEEEEEEEeCCcEEEEEEEcCCCc-------------------------
Confidence 45554 89998632 12346799999994 24777776553
Q ss_pred CCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeCh-HHHHHHHHHHH
Q 001225 533 YNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGP-PCRDIARHFVQ 582 (1120)
Q Consensus 533 ~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gp-aa~dl~~~F~q 582 (1120)
|+ .+. .-+-|.++...-| .+.|+...|..
T Consensus 131 -Ne-------------------~TA-r~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 131 -NE-------------------KTA-RIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp -ST-------------------THC-CCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred -Cc-------------------cch-hheecceeecCCHHHHHHHHHHHHH
Confidence 21 112 2577988888775 68888888864
No 168
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.45 E-value=5.5 Score=46.00 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=59.8
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEec--CeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKP--GFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkd--s~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
-|||+|+||.- -...|+.|||+++. ++|.|-+.|.+..+.---|=+ | .|
T Consensus 16 vkEgWlhKrGE-------------------~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNn--F--------~v 66 (516)
T KOG0690|consen 16 VKEGWLHKRGE-------------------HIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNN--F--------MV 66 (516)
T ss_pred HHhhhHhhcch-------------------hhhcccceEEEEeeCCceEeeccCCccCCCCcccccc--h--------hh
Confidence 48999988721 12679999999985 688898888766543211111 1 11
Q ss_pred eecccccCCCCcceeEEEEeCceEEEE----EecChhhHHHHHHHHHhhcC
Q 001225 303 YLASQVKGSNPLRYAFQVSCGNRSIKL----RTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~~~r~l~l----~~~s~~~~~~w~~~i~~~~~ 349 (1120)
.-..-.+-..+..+.|.|...+.+-+| -..|...-.+|..+|+..++
T Consensus 67 ~~cq~m~~erPrPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 67 RDCQTMKTERPRPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred hhhhhhhccCCCCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence 111111223356678888887765443 34566777889999987663
No 169
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=71.42 E-value=17 Score=45.58 Aligned_cols=109 Identities=25% Similarity=0.408 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeE
Q 001225 819 RILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISF 898 (1120)
Q Consensus 819 ~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f 898 (1120)
.|.+||++ |+.+ |=+|.||+-+..-|+. . +=++|. .+|.+ +|+.+ +
T Consensus 385 pIV~ALi~----AA~n--GKqVtvlVELkARFDE-----E-----~NI~WA------------k~LE~-AGvhV-----v 430 (696)
T COG0855 385 PIVRALID----AAEN--GKQVTVLVELKARFDE-----E-----ANIHWA------------KRLER-AGVHV-----V 430 (696)
T ss_pred HHHHHHHH----HHHc--CCeEEEEEEEhhhcCh-----h-----hhhHHH------------HHHHh-CCcEE-----E
Confidence 47777766 4444 5566666666655532 1 224564 34666 78865 3
Q ss_pred eeeccccccCCCCCccccceeeeeeEEEEe----c---cEEEEcccccccCCCCCCCCceeeEEEEccchhhcccCCCCc
Q 001225 899 YGLRSYGRLCDGGPVATSQVYVHSKVMIID----D---RAALIGSSNINDRSLLGSRDSEIDVVIEDKEFLESSMNGEPW 971 (1120)
Q Consensus 899 ~~Lr~~~~~~~~g~~vte~iyvHSKlmIVD----D---~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~~v~s~M~G~~~ 971 (1120)
|++- | .-+|||+++|= | +|+-+|+.|.|..+-. .=+-+++..-|++
T Consensus 431 yG~~--------g------lKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAr--iYTD~sl~Tad~~----------- 483 (696)
T COG0855 431 YGVV--------G------LKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPE----------- 483 (696)
T ss_pred eccc--------c------eeeeeeEEEEEEecCCcEEEEEEecCCCCCcccee--eeeechhccCCHH-----------
Confidence 4432 2 36899999873 3 7999999999999863 4455555555544
Q ss_pred chhhhHHHHHHHHHHhhcCCCc
Q 001225 972 KAGKFSHSLRCFLWAEHLGLHA 993 (1120)
Q Consensus 972 ~agkfa~~LR~~L~~eHlG~~~ 993 (1120)
++.+++. ||-...|...
T Consensus 484 ----i~~Dv~~-lFn~ltGy~~ 500 (696)
T COG0855 484 ----IGADVTD-LFNFLTGYAR 500 (696)
T ss_pred ----HHHHHHH-HHHHhcCCCc
Confidence 4555553 6776666643
No 170
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=69.23 E-value=16 Score=46.42 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=54.5
Q ss_pred ceEEEEEecCeEEEEeC--CCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeC---ceEEEEEecCh
Q 001225 260 HKVWAVLKPGFLVLLED--PYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCG---NRSIKLRTTNS 334 (1120)
Q Consensus 260 ~krW~vvkds~l~y~~d--~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~r~l~l~~~s~ 334 (1120)
++|+||++..+|.|+++ .....+..-.++|..-.... .|.++. ....=|-|.|-|. ++++++-|.+.
T Consensus 24 ~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed-------~Gr~~~-~g~~~yvl~~Yn~~~~~~~~~~~a~~~ 95 (719)
T PLN00188 24 HMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVED-------RGLKTH-HGHMVYVLSVYNKKEKYHRITMAAFNI 95 (719)
T ss_pred eeEEEEEecchhhhcccCCccccccceeeccCCCceEee-------cCceEE-cCceEEEEEEecCCCccccEEEecCCH
Confidence 58999999999999987 22334555566774321111 111100 0012344666655 57999999999
Q ss_pred hhHHHHHHHHHhhcCC
Q 001225 335 GKVKEWVAAINDAGLR 350 (1120)
Q Consensus 335 ~~~~~w~~~i~~~~~~ 350 (1120)
.++..|+.+++++...
T Consensus 96 eea~~W~~a~~~a~~q 111 (719)
T PLN00188 96 QEALIWKEKIESVIDQ 111 (719)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998753
No 171
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=67.20 E-value=46 Score=36.01 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCC
Q 001225 782 GSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPG 849 (1120)
Q Consensus 782 ~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~ 849 (1120)
+-|....+..|+.|+.|..+.. ||+.. |-. -+.++|.+. .++|++++|+....-+
T Consensus 38 e~il~~Li~~l~k~~ef~IsVa--Fit~s-G~s----ll~~~L~d~------~~Kgvkgkilts~Yln 92 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVA--FITES-GLS----LLFDLLLDL------VNKGVKGKILTSDYLN 92 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEE--EeeCc-cHH----HHHHHHHHH------hcCCceEEEecccccC
Confidence 4799999999999999999985 88763 211 233444432 5789999999975433
No 172
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=66.98 E-value=9.9 Score=46.20 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=54.0
Q ss_pred CCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeeccc--ccCCCCcceeEEEE-----eCceEEEE
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQ--VKGSNPLRYAFQVS-----CGNRSIKL 329 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~-----~~~r~l~l 329 (1120)
..|+|-+||+|.|-|.|.-.-.+..+++.-.+-- + .+.+|+++-+ .|-.-++.|||.|. +..|.|++
T Consensus 331 KsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~-~-----~~snVYt~i~~rKkyksPTd~~f~~K~~~~~~~~r~lk~ 404 (622)
T KOG3751|consen 331 KSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLAD-L-----HSSNVYTGIGGRKKYKSPTDYGFCIKPNKLRNKRRFLKM 404 (622)
T ss_pred ccceeEEEEEecCcceEccCCCCCCchhhHHHHh-c-----ccCceEEeecchhccCCCCCceEEeeeccccCcccceee
Confidence 4699999999999999974333334555443221 1 1234444322 12234678888775 45688998
Q ss_pred EecChh-hHHHHHHHHHhhc
Q 001225 330 RTTNSG-KVKEWVAAINDAG 348 (1120)
Q Consensus 330 ~~~s~~-~~~~w~~~i~~~~ 348 (1120)
-|.-.. -...|+.+|+-..
T Consensus 405 lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 405 LCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred eecccchhHHHHHHHHHHHH
Confidence 886544 4678999887653
No 173
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=66.17 E-value=42 Score=33.55 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=32.3
Q ss_pred cceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 314 LRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 314 ~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..++|.|.++.|+|.|.|.+..+..-|+.+|..+.
T Consensus 87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999998764
No 174
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.77 E-value=8.8 Score=45.82 Aligned_cols=85 Identities=16% Similarity=0.290 Sum_probs=59.9
Q ss_pred eEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccccccCCCCCCCCCCCCCCCcc
Q 001225 76 LSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAVVQDDDEPDDGAVPMHPSES 155 (1120)
Q Consensus 76 ~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1120)
-.|.+--+|-+.. |.||||||--||.+|..+ | ..++
T Consensus 206 i~y~ltpt~t~~~--v~rrykhfdwl~~rl~~k---------------f-~~i~-------------------------- 241 (490)
T KOG2528|consen 206 IAYQLTPTHTNIS--VSRRYKHFDWLYERLLLK---------------F-PLIP-------------------------- 241 (490)
T ss_pred eEeeecccccCcc--hhhcccccHHHHHHHHhh---------------c-cccc--------------------------
Confidence 4566666666553 999999999999977630 0 0111
Q ss_pred ccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceec
Q 001225 156 VRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVS 213 (1120)
Q Consensus 156 ~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS 213 (1120)
+|+ ||. +-.-||- .+.+.||+.|+.|.+.+...+.+..+...+.||.+-
T Consensus 242 -----vp~---Lpd-kq~~gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~ 292 (490)
T KOG2528|consen 242 -----VPP---LPD-KQVTGRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCP 292 (490)
T ss_pred -----CCC---CCc-cccccchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCC
Confidence 122 442 2334442 677788899999999999999999998999998775
No 175
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=65.14 E-value=3.9 Score=49.52 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=28.0
Q ss_pred ceeeeeeEEEEec-------cEEEEcccccccCCCCCC----------CCceeeEEEE
Q 001225 917 QVYVHSKVMIIDD-------RAALIGSSNINDRSLLGS----------RDSEIDVVIE 957 (1120)
Q Consensus 917 ~iyvHSKlmIVDD-------~~~iIGSANiN~RSm~G~----------~DsEi~v~i~ 957 (1120)
.+..|+|+++... .|+++|||||..-.+ |. ++.|++|++.
T Consensus 346 ~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAW-G~~~~~~~~l~i~nyElGVl~~ 402 (443)
T PF06087_consen 346 RAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAW-GKRSKNGSQLSIRNYELGVLFL 402 (443)
T ss_dssp TS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEEE
T ss_pred CcCcceEEEEEecCCCCCccceEEeCcccCCHHHh-cccccCCceeeecceEEEEEEe
Confidence 3588999999886 599999999965444 44 9999999994
No 176
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=63.43 E-value=6.7 Score=45.10 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=30.5
Q ss_pred eeeeeeEEEE-e---ccEEEEccccccc-CCCCCCCCceeeEEEEccc
Q 001225 918 VYVHSKVMII-D---DRAALIGSSNIND-RSLLGSRDSEIDVVIEDKE 960 (1120)
Q Consensus 918 iyvHSKlmIV-D---D~~~iIGSANiN~-RSm~G~~DsEi~v~i~D~~ 960 (1120)
+-+|+|+.+- . +..++|||||+.- =... .+-.| ++++.|+.
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~~ 124 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDPN 124 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecChH
Confidence 4789999998 2 4679999999977 2222 47788 77777764
No 177
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=59.59 E-value=87 Score=30.84 Aligned_cols=35 Identities=20% Similarity=0.484 Sum_probs=29.8
Q ss_pred CCCcceeEEEEeCce--EEEEEecChhhHHHHHHHHH
Q 001225 311 SNPLRYAFQVSCGNR--SIKLRTTNSGKVKEWVAAIN 345 (1120)
Q Consensus 311 ~~~~~~~~~i~~~~r--~l~l~~~s~~~~~~w~~~i~ 345 (1120)
..+.++=|.|....+ .+.|.+.|......|+.++.
T Consensus 66 ~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 66 SIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred CccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 345688899987777 89999999999999998875
No 178
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=56.44 E-value=16 Score=45.22 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHHHHhhcccccch
Q 001225 178 TVAERAKVAMQGYLNHFMGNIDIVNSR 204 (1120)
Q Consensus 178 ~~~~rrr~~LE~YL~~LL~~~~~~~~~ 204 (1120)
.+.++|+..|++||+.+...+.+.++.
T Consensus 218 ~~i~~r~~~L~~~~~~~~~hp~lsn~~ 244 (524)
T COG5391 218 EFIEERRQSLQNFLRRVSTHPLLSNYK 244 (524)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccc
Confidence 677788889999999999888877763
No 179
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.06 E-value=31 Score=40.96 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhccccc
Q 001225 178 TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFL 210 (1120)
Q Consensus 178 ~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FL 210 (1120)
.+.+|| ..||+||+++-..+.+..+.-+-.||
T Consensus 68 ~~~~rr-~~leqylqa~~q~~~l~~s~~~~~fL 99 (407)
T KOG3784|consen 68 QLDSRR-RGLEQYLQAVCQDPVLARSELVQKFL 99 (407)
T ss_pred hhHHHH-HHHHHHHHHHhcCccccchhhhhHHH
Confidence 566666 59999999999888887776555554
No 180
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=52.27 E-value=69 Score=31.00 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=28.6
Q ss_pred ceeEEEEeCc---eEEEEEecChhhHHHHHHHHHhhc
Q 001225 315 RYAFQVSCGN---RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 315 ~~~~~i~~~~---r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.++|.|.... +++.+.|+|...-+.|++.|..+.
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 5778775543 799999999999999999998764
No 181
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=48.40 E-value=1.1e+02 Score=30.43 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=27.7
Q ss_pred CcceeEEEEeCc---eEEEEEecChhhHHHHHHHHHhhc
Q 001225 313 PLRYAFQVSCGN---RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 313 ~~~~~~~i~~~~---r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+.++.+.+.... .+.++.+.|...-..|+..|.+..
T Consensus 74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il 112 (114)
T cd01232 74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL 112 (114)
T ss_pred CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 455555555544 588999999999999999998753
No 182
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=48.16 E-value=43 Score=41.51 Aligned_cols=35 Identities=34% Similarity=0.534 Sum_probs=30.7
Q ss_pred cceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 314 LRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 314 ~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..|.|.+.-..|.+.|.+.+....++|+++|..+.
T Consensus 335 ~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~I 369 (623)
T KOG4424|consen 335 LPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAI 369 (623)
T ss_pred CCceEEEecccceEEeecCchhhHHHHHHHHHHHH
Confidence 46778887779999999999999999999998865
No 183
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=44.70 E-value=27 Score=41.09 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=30.2
Q ss_pred CceeEEEEEEEeeeeE-----EEEEEehhhHHHHHHHHHH
Q 001225 73 PMLLSYTIELQYKQFK-----WSLVKKASQILYLHFAVKK 107 (1120)
Q Consensus 73 ~~~~~YtIeL~hG~fk-----WtIkrk~k~f~~LH~~Lk~ 107 (1120)
+..++|.|.+.-..-+ |+|.|+|++|..||.+|++
T Consensus 133 ~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~ 172 (362)
T KOG2101|consen 133 KSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKR 172 (362)
T ss_pred cceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHH
Confidence 4578999998876666 9999999999999998885
No 184
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=36.08 E-value=2.5e+02 Score=27.94 Aligned_cols=81 Identities=10% Similarity=0.078 Sum_probs=49.6
Q ss_pred ceEEEEEecCeEEEEeCCCCC-----ceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCc--eEEEEEec
Q 001225 260 HKVWAVLKPGFLVLLEDPYNT-----RVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN--RSIKLRTT 332 (1120)
Q Consensus 260 ~krW~vvkds~l~y~~d~~~~-----~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--r~l~l~~~ 332 (1120)
+.|.|.|=|.-|+|++ ++.. ...+-|.+|.-.-.+..++.... .....+++|+|.+.+ ..+.+-|+
T Consensus 19 q~R~~FLFD~~LI~CK-kd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~------~~~~~knafkl~~~~~~~~~~f~~K 91 (109)
T cd01224 19 SSRVLFLFDHQMVLCK-KDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFS------SGHTIKNSLKIYSESTDEWYLFSFK 91 (109)
T ss_pred ccEEEEEecceEEEEe-cccccCCcEEEEEEEEcccEEEEECCCCcccc------CCceeEEEEEEEEcCCCeEEEEEEC
Confidence 3578888888888887 3321 23333333321100111111100 012468999999987 46999999
Q ss_pred ChhhHHHHHHHHHhh
Q 001225 333 NSGKVKEWVAAINDA 347 (1120)
Q Consensus 333 s~~~~~~w~~~i~~~ 347 (1120)
+..+-..|++++...
T Consensus 92 t~e~K~~Wm~a~~~e 106 (109)
T cd01224 92 SAERKHRWLSAFALE 106 (109)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998764
No 185
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=35.82 E-value=2.1e+02 Score=29.46 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=25.0
Q ss_pred ceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 315 RYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 315 ~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
++.+.-..+...++|.|.|...-..|+..|.+..
T Consensus 82 kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL 115 (133)
T cd01227 82 KFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVL 115 (133)
T ss_pred EEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 3333333344689999999999999999998764
No 186
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=35.27 E-value=41 Score=40.95 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=35.1
Q ss_pred eeeeeEEEE---ec-cEEEEcccccccCCCCCCCCceeeEEEEcc-chhhcccCCCCcchhhhHHHHHHHHH
Q 001225 919 YVHSKVMII---DD-RAALIGSSNINDRSLLGSRDSEIDVVIEDK-EFLESSMNGEPWKAGKFSHSLRCFLW 985 (1120)
Q Consensus 919 yvHSKlmIV---DD-~~~iIGSANiN~RSm~G~~DsEi~v~i~D~-~~v~s~M~G~~~~agkfa~~LR~~L~ 985 (1120)
-.|||+||. |+ --++|.||||-..-+ ..-+=+|-+.|- ........+..-.-..|..+|..-|-
T Consensus 101 ~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw---~~~~q~vw~~d~lP~~~~~~~~~~~~~~~F~~dL~~yL~ 169 (443)
T PF06087_consen 101 THHSKMMLLFYEDGSLRVVIPTANLTPYDW---NNKTQGVWIQDFLPRLPSSKSSSEESGSRFKKDLVAYLN 169 (443)
T ss_dssp -B--EEEEEEETTCEEEEEEESS-BSHHHH---CSSB-EEEE---E-B-ECTS-S--SSTTHHHHHHHHHHH
T ss_pred cccceeEEEEeCCccEEEEEECCCCCHHHH---CCcceeEEEecccCcccccccccCCCCCchHHHHHHHHH
Confidence 679999997 66 789999999987776 456667777775 33222112222244568777776553
No 187
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=34.91 E-value=11 Score=43.83 Aligned_cols=49 Identities=29% Similarity=0.393 Sum_probs=28.4
Q ss_pred hccccce-ecccccccccC----CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEe
Q 001225 205 EVCKFLE-VSRLSFSEEYG----PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLK 267 (1120)
Q Consensus 205 ~l~~FLE-vS~lsf~~~~G----~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvk 267 (1120)
.+..||+ +|..+-....| .-.|||++.||.. | ++ .|+...|+||||.+.
T Consensus 259 ~v~~FLd~Is~~~~~~~~~~~~~~~~~e~~~~~r~~----~-----~~-----~~~~~~~kkr~~~l~ 312 (313)
T cd05394 259 VVKKFLDEISSTETKEPSGVSEPVHLKEGEMYKRAQ----G-----RT-----RIGKKNFKKRWFCLT 312 (313)
T ss_pred HHHHHHHHHcCCCCCCCCCCCCchhhHHHHHHhhcc----C-----CC-----ccccccchhheeecC
Confidence 4666764 45444333333 3579999987742 1 11 122246899999874
No 188
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=32.40 E-value=38 Score=44.08 Aligned_cols=80 Identities=15% Similarity=0.381 Sum_probs=57.6
Q ss_pred CCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecChhh
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGK 336 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~ 336 (1120)
..|.|+||-+++++++|..+-.+-.. ++..|..+ .. |. ...+.+..++=|.|.+++++..|.+.|...
T Consensus 289 ~tw~r~~f~~q~~~l~~~~r~~~~~~--~~~~dL~~-cs------vk---~~~~~~drr~CF~iiS~tks~~lQAes~~d 356 (785)
T KOG0521|consen 289 KTWKRRWFSIQDGQLGYQHRGADAEN--VLIEDLRT-CS------VK---PDAEQRDRRFCFEIISPTKSYLLQAESEKD 356 (785)
T ss_pred hhHHhhhhhhhccccccccccccccc--cccccchh-cc------cc---CCcccccceeeEEEecCCcceEEecCchhH
Confidence 45999999999999999864322222 45455432 11 11 112333578999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 001225 337 VKEWVAAINDAG 348 (1120)
Q Consensus 337 ~~~w~~~i~~~~ 348 (1120)
-.+|+..|....
T Consensus 357 ~~~Wi~~i~nsi 368 (785)
T KOG0521|consen 357 CQDWISALQNSI 368 (785)
T ss_pred HHHHHHHHHHHH
Confidence 999998887754
No 189
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=31.50 E-value=98 Score=30.81 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=30.9
Q ss_pred cceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 314 LRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 314 ~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..+-|-|.+..+.+.++|.|+++.+.|.+.|+.+-
T Consensus 69 ~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL 103 (110)
T PF08458_consen 69 ERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHML 103 (110)
T ss_pred eEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHH
Confidence 45668888889999999999999999999999874
No 190
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.33 E-value=3e+02 Score=26.46 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=47.9
Q ss_pred cceEEEEEecC-eEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecChhhH
Q 001225 259 WHKVWAVLKPG-FLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKV 337 (1120)
Q Consensus 259 w~krW~vvkds-~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~ 337 (1120)
+++|=|++.|. -|.|+ ||.++.+..=+-+... +-.+.+ . ...+|.|...+|...|.-. ...+
T Consensus 15 ~kkR~LiLTd~PrL~yv-dp~~~~~KgeIp~s~~-------~l~v~~------~--~~~~F~I~Tp~rty~leD~-~~~a 77 (89)
T cd01262 15 AKKRQLILTNGPRLIYV-DPVKKVVKGEIPWSDV-------ELRVEV------K--NSSHFFVHTPNKVYSFEDP-KGRA 77 (89)
T ss_pred cceeeEEEecCceEEEE-cCCcCeEEeEeccccc-------ceEEEE------e--cCccEEEECCCceEEEECC-CCCH
Confidence 36788888875 46666 4888777765555420 111211 1 1257999999999999543 4678
Q ss_pred HHHHHHHHhh
Q 001225 338 KEWVAAINDA 347 (1120)
Q Consensus 338 ~~w~~~i~~~ 347 (1120)
.+|..+|+++
T Consensus 78 ~~W~~~I~~~ 87 (89)
T cd01262 78 SQWKKAIEDL 87 (89)
T ss_pred HHHHHHHHHH
Confidence 8999999875
No 191
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=27.69 E-value=60 Score=32.22 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=48.6
Q ss_pred CCcceEEEEEecCeEEEEeCCCCCc-eeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecChh
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNTR-VLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSG 335 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~~-~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~ 335 (1120)
..|++|+|-+=+.=|-+- ..++. --+++.+|.--.+.. ++ + ++|..| =--++|.+ ..++.|.|.+.-
T Consensus 18 s~WQ~Ry~~LfPNRLE~~--~~~~~~~~eLi~M~~i~~V~~--e~-~----~iK~~~--CI~ik~k~-~~k~vlt~~d~i 85 (116)
T cd01240 18 SQWQTRYFKLYPNRLELY--GESEANKPELITMDQIEDVSV--EF-Q----QIKEEN--CILLKIRD-EKKIVLTNSDEI 85 (116)
T ss_pred HHHHHHHheeCcceeeec--ccccccCCcEEEeehhhhcch--hh-e----eeccCc--eEEEEEcC-CceEEEecCCcH
Confidence 579999999888877773 33332 445666664321110 00 0 112221 11234443 678999999999
Q ss_pred hHHHHHHHHHhh
Q 001225 336 KVKEWVAAINDA 347 (1120)
Q Consensus 336 ~~~~w~~~i~~~ 347 (1120)
.+.+|..+|.++
T Consensus 86 ~l~qW~~elr~a 97 (116)
T cd01240 86 ELKQWKKELRDA 97 (116)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 192
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=27.52 E-value=59 Score=30.09 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=16.9
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHH
Q 001225 999 ISDPLADTTYRDLWQATAEENTLIY 1023 (1120)
Q Consensus 999 ~~dp~~~~~~~~~W~~~a~~Nt~iy 1023 (1120)
..+|-+-+.-+.+ +.+|..|.++|
T Consensus 5 F~~PesleCVr~V-n~iae~nW~~y 28 (74)
T PF12357_consen 5 FLEPESLECVRRV-NEIAEENWKQY 28 (74)
T ss_pred ccCCCCHHHHHHH-HHHHHHHHHHh
Confidence 4567777777666 77888877665
No 193
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.31 E-value=69 Score=41.88 Aligned_cols=85 Identities=20% Similarity=0.434 Sum_probs=55.2
Q ss_pred CCcceEEEEEecCeEEEEeCCCCCceeEEEE--EecCCCCCCCCCCCeeecccccCCCCcceeEEEEe------------
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNTRVLDIIV--FELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSC------------ 322 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~~~~~v~l--~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------------ 322 (1120)
.-|.++|.+|-.+.|-|-+.|++.+ +.|-+ +|..-=...+ |.-+ ..+-.+..+.|.|..
T Consensus 1006 GaWhRyWc~L~gg~I~fWk~PdDEk-rK~Pig~IDLt~CTsq~----ie~a--~rdicar~ntFhie~~rPl~~Dqep~~ 1078 (1116)
T KOG3640|consen 1006 GAWHRYWCALHGGEIKFWKYPDDEK-RKVPIGQIDLTKCTSQS----IEEA--RRDICARPNTFHIEVWRPLEDDQEPLL 1078 (1116)
T ss_pred chhhhhhHHhcCCeeeeecCcchhc-ccCcceeeehhhhhccc----cccc--hhhhccCCceeEEEeecccccccCcch
Confidence 4699999999999999999999887 55443 5532100011 1000 011234456666651
Q ss_pred -Cce-EEEEEecChhhHHHHHHHHHhhc
Q 001225 323 -GNR-SIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 323 -~~r-~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
-.| +..|-+.++.+...|+..|+...
T Consensus 1079 ie~r~Rv~LaADTkeel~~Wls~iN~tL 1106 (1116)
T KOG3640|consen 1079 IEKRLRVMLAADTKEELQSWLSAINDTL 1106 (1116)
T ss_pred hhhcceeeeecccHHHHHHHHHHHHHHH
Confidence 124 67778889999999999998854
No 194
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=22.26 E-value=2.7e+02 Score=27.20 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=45.5
Q ss_pred EEecCeEEEEeCCCCCceeEEEEEecCC---CCC-------CCCCCC--eeecccccCCCCcceeEEEEe-CceEEEEEe
Q 001225 265 VLKPGFLVLLEDPYNTRVLDIIVFELLP---TTN-------GKEGPG--VYLASQVKGSNPLRYAFQVSC-GNRSIKLRT 331 (1120)
Q Consensus 265 vvkds~l~y~~d~~~~~~~~v~l~D~~~---~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~i~~-~~r~l~l~~ 331 (1120)
+|+|+||+=+. --.-+.+.+|||+-.- .+. .+++.. |-+..-.-..- .|++.+ .+.+..+-+
T Consensus 3 Lv~eg~lvel~-~~~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~----~~~~~~~~~KSf~~~a 77 (96)
T cd01228 3 LVKDSFLVELV-EGSRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE----PFRIHNKNGKSYTFLL 77 (96)
T ss_pred ccccceeeeeh-hCCCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch----hhhccccCCceEEEEe
Confidence 57888888876 4466788888887421 000 000100 11110000011 133333 456888999
Q ss_pred cChhhHHHHHHHHHhhc
Q 001225 332 TNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 332 ~s~~~~~~w~~~i~~~~ 348 (1120)
.|..+-.+|+..|.+..
T Consensus 78 sS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 78 SSDYERSEWRESIQKLQ 94 (96)
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999999998753
No 195
>PF10015 DUF2258: Uncharacterized protein conserved in archaea (DUF2258); InterPro: IPR017140 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.19 E-value=1.6e+02 Score=27.36 Aligned_cols=43 Identities=28% Similarity=0.372 Sum_probs=32.3
Q ss_pred cchhhhHHHHHHHHHHhhcCCCcCcccccCCCCchhHHHHHHHHHHHHHHHHHhhhc
Q 001225 971 WKAGKFSHSLRCFLWAEHLGLHAGEISRISDPLADTTYRDLWQATAEENTLIYEDVF 1027 (1120)
Q Consensus 971 ~~agkfa~~LR~~L~~eHlG~~~~~~~~~~dp~~~~~~~~~W~~~a~~Nt~iy~~vF 1027 (1120)
..||.||..||+-||+-.-|..+ + +.+=++.|+-|-.+|+.+-
T Consensus 7 ViAa~YAdKlRRvlfA~l~~~v~-----------~---~ei~ra~aeLNk~ly~~lv 49 (75)
T PF10015_consen 7 VIAAGYADKLRRVLFAALRGKVP-----------P---EEIVRAAAELNKKLYEKLV 49 (75)
T ss_pred EeehHHHHHHHHHHHHHHcCCCC-----------H---HHHHHHHHHHHHHHHHHHH
Confidence 46899999999999997633322 1 2345889999999999854
No 196
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=20.01 E-value=2e+02 Score=35.02 Aligned_cols=33 Identities=9% Similarity=0.214 Sum_probs=26.0
Q ss_pred ceeEEEEe-CceEEEEEecChhhHHHHHHHHHhh
Q 001225 315 RYAFQVSC-GNRSIKLRTTNSGKVKEWVAAINDA 347 (1120)
Q Consensus 315 ~~~~~i~~-~~r~l~l~~~s~~~~~~w~~~i~~~ 347 (1120)
.+.|.|.+ ..+++.+.+.|.....+|+.+|+..
T Consensus 442 ~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 475 (478)
T PTZ00267 442 PNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRA 475 (478)
T ss_pred CceEEEEecCCcEEEEecCChHHHHHHHHHHHHH
Confidence 45565544 4568888999999999999999875
Done!