Query 001225
Match_columns 1120
No_of_seqs 543 out of 2589
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:21:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 100.0 1.9E-37 6.5E-42 369.5 25.0 164 373-590 54-226 (506)
2 3hsi_A Phosphatidylserine synt 100.0 5.4E-34 1.8E-38 335.5 24.1 356 373-960 25-401 (458)
3 1xdp_A Polyphosphate kinase; P 99.8 1.3E-20 4.3E-25 230.4 20.2 141 378-587 340-494 (687)
4 2o8r_A Polyphosphate kinase; s 99.8 4.2E-21 1.4E-25 233.3 15.5 144 378-584 345-498 (705)
5 4ggj_A Mitochondrial cardiolip 99.6 2.5E-15 8.7E-20 158.0 8.5 144 374-589 35-179 (196)
6 1byr_A Protein (endonuclease); 99.5 1.8E-13 6E-18 136.9 13.1 121 781-961 12-133 (155)
7 1byr_A Protein (endonuclease); 99.5 3.6E-13 1.2E-17 134.7 13.7 143 376-588 4-149 (155)
8 4ggj_A Mitochondrial cardiolip 99.4 1.6E-13 5.6E-18 144.2 7.7 118 783-962 46-163 (196)
9 4gel_A Mitochondrial cardiolip 99.3 1.9E-12 6.6E-17 137.3 10.3 145 381-589 54-211 (220)
10 1xdp_A Polyphosphate kinase; P 99.1 8.4E-11 2.9E-15 144.1 9.7 120 785-962 349-480 (687)
11 1kq6_A NCF-1, P47PHOX, neutrop 99.1 3.6E-10 1.2E-14 112.9 10.8 129 57-230 8-140 (141)
12 3p0c_A Nischarin; structural g 99.1 3E-10 1E-14 112.1 10.0 104 57-218 24-129 (130)
13 1h6h_A Neutrophil cytosol fact 99.1 2.3E-10 8E-15 114.4 9.3 118 54-217 18-139 (143)
14 4gel_A Mitochondrial cardiolip 99.0 7.5E-10 2.5E-14 117.4 10.9 136 782-962 57-195 (220)
15 3hsi_A Phosphatidylserine synt 99.0 2.3E-09 7.7E-14 126.5 14.7 155 762-963 27-185 (458)
16 2ett_A Sorting nexin-22; PX do 99.0 1.1E-09 3.9E-14 107.8 10.0 106 54-216 9-119 (128)
17 4az9_A Sorting nexin-24; prote 99.0 1.9E-09 6.6E-14 106.2 11.1 102 57-215 24-127 (129)
18 1xte_A Serine/threonine-protei 98.9 2.8E-09 9.7E-14 108.0 9.1 108 55-216 7-117 (154)
19 2v6v_A BUD emergence protein 1 98.8 1.5E-08 5E-13 103.1 11.7 125 54-222 16-144 (156)
20 1v0w_A Phospholipase D; hydrol 98.8 1.7E-08 5.9E-13 120.2 13.6 142 782-960 65-208 (506)
21 2ar5_A Phosphoinositide 3-kina 98.8 1.4E-08 4.9E-13 98.8 9.8 105 57-215 7-117 (121)
22 3lui_A Sorting nexin-17, SNX17 98.8 9.7E-09 3.3E-13 99.1 7.6 106 57-216 5-111 (115)
23 2v14_A Kinesin-like motor prot 98.8 3.4E-08 1.2E-12 97.9 11.4 97 57-206 7-106 (134)
24 2csk_A Sorting nexin 12; SNX12 98.7 6.8E-08 2.3E-12 96.9 11.1 106 57-216 12-133 (146)
25 2i4k_A Sorting nexin-1, SNX1; 98.7 4.1E-09 1.4E-13 102.9 2.0 106 57-213 5-127 (128)
26 2iwl_X Phosphatidylinositol-4- 98.7 3.1E-08 1.1E-12 98.8 7.7 108 57-218 22-135 (140)
27 1ocs_A Sorting nexin GRD19; so 98.6 8.6E-08 2.9E-12 98.0 10.3 112 57-214 37-159 (162)
28 2l73_A NADPH oxidase organizer 98.6 7.1E-08 2.4E-12 97.4 9.5 123 55-221 8-135 (149)
29 3iq2_A Sorting nexin-7; SNX7, 98.6 1.3E-07 4.5E-12 94.1 10.8 107 57-216 10-127 (138)
30 1kmd_A VAM7P, vacuolar morphog 98.6 5.4E-08 1.8E-12 94.1 5.9 96 57-214 7-115 (117)
31 1u5d_A SKAP55, SRC kinase-asso 98.5 4.3E-07 1.5E-11 84.2 11.0 102 223-348 2-104 (108)
32 1pls_A Pleckstrin homology dom 98.5 7.3E-07 2.5E-11 84.1 12.5 95 224-348 5-100 (113)
33 2dn6_A KIAA0640 protein; PH do 98.5 6.5E-07 2.2E-11 84.3 11.1 97 222-348 6-102 (115)
34 2d9y_A Pleckstrin homology dom 98.5 1.3E-06 4.6E-11 82.4 12.5 97 224-348 11-108 (117)
35 2rsg_A Collagen type IV alpha- 98.4 5.3E-07 1.8E-11 82.5 9.1 88 226-347 3-92 (94)
36 1upq_A PEPP1; PH domain, phosp 98.4 9.5E-07 3.2E-11 84.4 11.2 97 225-349 12-109 (123)
37 1u5f_A SRC-associated adaptor 98.4 1.5E-06 5E-11 86.4 12.8 106 220-349 13-119 (148)
38 2yry_A Pleckstrin homology dom 98.4 1E-06 3.6E-11 83.9 11.0 98 223-348 21-119 (122)
39 1wi1_A Calcium-dependent activ 98.4 8.7E-07 3E-11 86.8 10.2 97 225-348 9-109 (126)
40 2da0_A 130-kDa phosphatidylino 98.4 8.5E-07 2.9E-11 84.3 9.9 91 224-348 10-100 (114)
41 2cod_A Centaurin-delta 1; ARF 98.4 1.1E-06 3.8E-11 83.2 10.5 92 223-348 7-98 (115)
42 2wwe_A Phosphoinositide-3-kina 98.4 5.5E-07 1.9E-11 87.7 8.4 96 57-211 27-125 (127)
43 1v89_A Hypothetical protein KI 98.4 1.6E-06 5.5E-11 81.8 11.3 99 221-348 5-111 (118)
44 1v5u_A SBF1, SET binding facto 98.4 2.3E-06 7.8E-11 80.8 12.3 104 222-349 6-111 (117)
45 2dkp_A Pleckstrin homology dom 98.4 1.6E-06 5.6E-11 83.3 11.2 98 223-348 20-118 (128)
46 2dhk_A TBC1 domain family memb 98.4 1.8E-06 6E-11 82.9 11.0 96 222-348 6-103 (119)
47 1fao_A Dual adaptor of phospho 98.3 2.8E-06 9.6E-11 81.6 12.1 95 223-348 17-111 (126)
48 1v5p_A Pleckstrin homology dom 98.3 1.8E-06 6.1E-11 84.5 10.7 97 226-349 17-120 (126)
49 1fgy_A GRP1; PH domain, signal 98.3 2.8E-06 9.7E-11 81.3 11.9 93 224-348 5-119 (127)
50 1wgq_A FYVE, rhogef and PH dom 98.3 4.4E-06 1.5E-10 78.4 13.0 97 222-349 6-103 (109)
51 1eaz_A Tandem PH domain contai 98.3 1.7E-06 5.8E-11 82.7 9.4 99 222-348 12-110 (125)
52 1x1f_A Signal-transducing adap 98.3 2.2E-06 7.4E-11 86.5 10.6 97 222-348 16-112 (149)
53 1v88_A Oxysterol binding prote 98.3 3.8E-06 1.3E-10 82.6 11.5 94 222-348 6-123 (130)
54 1dyn_A Dynamin; signal transdu 98.3 5.3E-06 1.8E-10 80.8 12.2 96 225-348 13-116 (125)
55 2d9v_A Pleckstrin homology dom 98.3 5.5E-06 1.9E-10 80.8 12.5 102 222-349 6-114 (130)
56 2lul_A Tyrosine-protein kinase 98.3 2.9E-06 1E-10 86.5 10.7 105 223-349 14-121 (164)
57 1btk_A Bruton'S tyrosine kinas 98.3 3.6E-06 1.2E-10 86.3 11.1 111 225-349 4-132 (169)
58 2cof_A Protein KIAA1914; PH do 98.2 6.2E-06 2.1E-10 77.4 11.7 93 223-348 7-100 (107)
59 3aj4_A Pleckstrin homology dom 98.2 5.4E-06 1.9E-10 78.0 10.9 103 225-348 6-110 (112)
60 2i5f_A Pleckstrin; PH domain, 98.2 6.8E-06 2.3E-10 76.6 11.0 99 222-348 5-108 (109)
61 3tfm_A Myosin X; split PH doma 98.2 4.5E-06 1.5E-10 89.5 11.0 101 221-349 55-155 (228)
62 2dyb_A Neutrophil cytosol fact 98.2 3E-06 1E-10 96.2 9.3 114 57-216 25-141 (341)
63 1u5e_A SRC-associated adaptor 98.2 9E-06 3.1E-10 86.4 12.2 104 221-348 103-207 (211)
64 3rcp_A Pleckstrin homology dom 98.2 1.5E-05 5.1E-10 73.8 12.1 77 257-348 13-92 (103)
65 1x05_A Pleckstrin; PH domain, 98.1 9.1E-06 3.1E-10 78.4 10.8 99 222-348 16-119 (129)
66 4a6h_A Phosphatidylinositol 4, 98.1 1.2E-05 3.9E-10 78.2 11.2 95 224-348 6-117 (120)
67 3dyt_A Sorting nexin-9; 3-heli 98.1 2.3E-06 7.7E-11 98.2 7.3 103 57-213 22-128 (366)
68 2j59_M RHO-GTPase activating p 98.1 1.2E-05 4E-10 81.6 11.2 105 225-348 4-110 (168)
69 3cxb_B Pleckstrin homology dom 98.1 2E-05 6.7E-10 75.1 11.4 98 226-348 2-100 (112)
70 2coc_A FYVE, rhogef and PH dom 98.1 1.6E-05 5.5E-10 76.3 10.5 82 257-348 21-105 (112)
71 2y7b_A Actin-binding protein a 98.1 7.8E-06 2.7E-10 79.2 8.2 100 224-348 5-127 (134)
72 1x1g_A Pleckstrin 2; PH domain 98.0 1.8E-05 6.2E-10 76.1 10.6 99 222-348 16-123 (129)
73 4akv_A Sorting nexin-33; trans 98.0 3E-06 1E-10 97.9 5.9 103 57-214 43-149 (386)
74 2d9x_A Oxysterol binding prote 98.0 1.1E-05 3.7E-10 77.2 8.8 92 223-348 7-103 (120)
75 1btn_A Beta-spectrin; signal t 98.0 1.6E-05 5.4E-10 73.7 9.6 101 226-347 1-106 (106)
76 1wg7_A Dedicator of cytokinesi 98.0 1.7E-05 5.8E-10 78.7 10.4 101 222-348 16-123 (150)
77 1unq_A RAC-alpha serine/threon 98.0 4.4E-06 1.5E-10 80.3 5.4 97 224-348 8-109 (125)
78 2p0d_A RHO GTPase-activating p 98.0 3E-05 1E-09 75.7 11.2 101 223-348 11-123 (129)
79 2o8r_A Polyphosphate kinase; s 97.9 2.2E-05 7.7E-10 96.2 11.3 121 784-962 353-487 (705)
80 3lju_X ARF-GAP with dual PH do 97.9 4.6E-05 1.6E-09 88.0 12.2 102 224-348 269-371 (386)
81 1wjm_A Beta-spectrin III; PH d 97.9 2.6E-05 8.9E-10 74.8 8.5 106 222-348 6-116 (123)
82 2w2x_D 1-phosphatidylinositol- 97.8 2.9E-05 9.8E-10 75.3 8.0 98 221-348 9-118 (124)
83 2rlo_A Centaurin-gamma 1; spli 97.8 6.2E-05 2.1E-09 72.9 10.1 35 314-348 88-123 (128)
84 2r09_A Cytohesin-3; autoinhibi 97.7 0.00012 4.3E-09 83.2 11.5 93 224-348 213-327 (347)
85 3a8p_A T-lymphoma invasion and 97.6 0.00019 6.5E-09 78.7 11.2 104 222-348 9-123 (263)
86 1qqg_A IRS-1, insulin receptor 97.6 8E-05 2.7E-09 81.8 8.0 92 222-348 8-111 (264)
87 2q13_A DCC-interacting protein 97.6 0.00015 5.1E-09 83.3 10.0 95 224-348 278-374 (385)
88 1dro_A Beta-spectrin; cytoskel 97.5 0.00015 5.2E-09 69.6 7.8 110 224-348 8-118 (122)
89 3tca_A Amyloid beta A4 precurs 97.5 0.00016 5.4E-09 79.3 8.8 101 223-348 167-275 (291)
90 3lju_X ARF-GAP with dual PH do 97.5 0.0001 3.5E-09 85.1 7.5 92 225-347 147-244 (386)
91 2ys3_A UNC-112-related protein 97.5 0.00013 4.3E-09 72.3 6.9 80 257-348 26-111 (137)
92 4h8s_A DCC-interacting protein 97.5 0.00014 4.8E-09 84.2 7.5 94 225-348 302-397 (407)
93 2dtc_A RAL guanine nucleotide 97.4 0.0012 4.1E-08 64.7 12.7 99 226-349 3-112 (126)
94 3hpc_X SNX5 protein; sprting n 97.3 0.00087 3E-08 68.4 10.8 30 185-214 122-151 (161)
95 3pp2_A RHO GTPase-activating p 97.3 0.0015 5.3E-08 63.1 11.6 106 222-348 6-122 (124)
96 2rov_A RHO-associated protein 97.2 0.00053 1.8E-08 66.2 7.5 86 258-348 19-114 (117)
97 4f7h_A Fermitin family homolog 97.2 0.0017 5.8E-08 66.0 11.0 80 257-348 64-149 (173)
98 3hk0_A Growth factor receptor- 97.2 0.0012 4E-08 72.2 10.7 100 223-348 131-239 (256)
99 1w1g_A HPDK1, 3-phosphoinositi 97.1 0.0022 7.7E-08 64.4 10.4 87 224-348 52-138 (151)
100 4bbk_A Kindlin-1, fermitin fam 97.1 0.0024 8.3E-08 64.2 10.4 80 257-348 43-128 (165)
101 2fjl_A 1-phosphatidylinositol- 96.8 0.0055 1.9E-07 61.6 10.3 38 311-348 107-147 (150)
102 4gmv_A RAS-associated and plec 96.5 0.0049 1.7E-07 68.2 8.8 100 223-348 157-265 (281)
103 4ejn_A RAC-alpha serine/threon 96.4 0.0032 1.1E-07 72.9 6.9 97 224-348 6-107 (446)
104 3qph_A TRMB, A global transcri 96.1 0.0045 1.6E-07 70.3 5.5 108 781-960 117-229 (342)
105 3a8n_A TIAM-1, T-lymphoma inva 94.5 0.072 2.4E-06 58.9 8.3 113 221-348 8-123 (279)
106 2d9w_A Docking protein 2; PH d 94.5 0.29 9.8E-06 47.8 11.4 102 222-349 10-121 (127)
107 3qph_A TRMB, A global transcri 94.4 0.12 4E-06 58.7 9.8 94 379-507 112-207 (342)
108 3tfm_A Myosin X; split PH doma 93.5 0.1 3.5E-06 55.6 6.8 38 221-277 18-55 (228)
109 2f5t_X Archaeal transcriptiona 93.4 0.12 4.2E-06 55.5 7.3 56 379-447 3-59 (233)
110 2c1l_A Restriction endonucleas 80.7 3.1 0.0001 44.9 7.3 80 836-960 63-145 (358)
111 1v5m_A SH2 and PH domain-conta 69.1 33 0.0011 33.7 10.6 34 315-348 95-129 (136)
112 3mpx_A FYVE, rhogef and PH dom 65.0 32 0.0011 39.4 11.6 78 258-348 257-336 (434)
113 1zc3_B Exocyst complex protein 57.7 78 0.0027 29.8 10.9 78 260-348 26-106 (113)
114 3ml4_A Protein DOK-7; tyrosine 57.4 26 0.00089 37.3 8.1 34 314-347 78-111 (224)
115 1v61_A RAC/CDC42 guanine nucle 52.6 25 0.00084 34.5 6.6 80 260-348 45-125 (132)
116 2f5t_X Archaeal transcriptiona 51.8 21 0.0007 38.2 6.4 52 781-847 8-59 (233)
117 3zvr_A Dynamin-1; hydrolase, D 47.1 1.2E+02 0.0043 37.8 13.2 78 260-348 559-644 (772)
118 3qwm_A Iqsec1, IQ motif and SE 38.9 1.5E+02 0.005 29.4 9.7 76 259-348 33-121 (140)
119 2lg1_A A-kinase anchor protein 32.6 1.5E+02 0.005 30.3 9.1 82 258-348 85-171 (185)
120 1q32_A TDP1P;, tyrosyl-DNA pho 31.1 25 0.00085 42.2 3.3 41 467-512 165-209 (544)
121 3t06_A PDZ-rhogef, RHO guanine 30.9 1.9E+02 0.0066 32.7 10.7 89 258-350 309-409 (418)
122 3ky9_A Proto-oncogene VAV; cal 26.4 3.5E+02 0.012 32.3 12.3 80 257-348 420-506 (587)
123 2vrw_B P95VAV, VAV1, proto-onc 24.2 6.3E+02 0.022 28.2 13.4 97 221-348 231-334 (406)
124 1mai_A Phospholipase C delta-1 21.5 1.8E+02 0.006 27.8 6.8 35 314-348 84-120 (131)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=1.9e-37 Score=369.47 Aligned_cols=164 Identities=21% Similarity=0.257 Sum_probs=117.4
Q ss_pred CCceEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEE-EcCCCCCchHHHHHHHHHHhhCC--cEEEEEEcccch
Q 001225 373 DGSQAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYL-IRPFENHPSSRLDALLEEKAKEG--IQVYILLYKEVS 449 (1120)
Q Consensus 373 ~gn~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL-~rp~~~~~~~rL~~lL~~kA~rG--VkVrILvyd~~~ 449 (1120)
.++.+.++.+|.++|++|+++|++||++|+| ++|+ +++ +..+.+|.++|++||+|| |+||||+++ .+
T Consensus 54 ~~~~~~~~~~g~~~~~~l~~~I~~Ak~~I~i-------~~y~~~~~--d~~g~~i~~aL~~aa~rGp~V~Vril~D~-~g 123 (506)
T 1v0w_A 54 GDDKCADRVGTKRLLAKMTENIGNATRTVDI-------STLAPFPN--GAFQDAIVAGLKESAAKGNKLKVRILVGA-AP 123 (506)
T ss_dssp TCTTCCCCHHHHHHHHHHHHHHHTCSSEEEE-------EEESSCCC--HHHHHHHHHHHHHHHHTTCCEEEEEEEEC-CC
T ss_pred CCceeEEecCHHHHHHHHHHHHHHhccEEEE-------EEeeccCC--ChHHHHHHHHHHHHHhCCCCcEEEEEEeC-cc
Confidence 3456778889999999999999999999999 5666 354 456789999999999999 999999754 22
Q ss_pred hh--hhhcchhhHHHHHc----ccCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCC
Q 001225 450 IA--LKINSMYSKKRLLK----IHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCP 523 (1120)
Q Consensus 450 ~a--l~~~s~~~k~~L~~----~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~ 523 (1120)
.. ...+..+. +.|.. .++++.+...+..... ..+.+||+|++|||+++||+||+|++.++|+
T Consensus 124 ~~~~~~~~~~~~-~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~r~H~K~~ViD~~~a~~Gg~Nl~~d~y~---------- 191 (506)
T 1v0w_A 124 VYHMNVIPSKYR-DELTAKLGKAAENITLNVASMTTSK-TAFSWNHSKILVVDGQSALTGGINSWKDDYL---------- 191 (506)
T ss_dssp --CCCCHHHHHH-HHHHHHHGGGGGGEEEEEEEECSBT-TTTBCBCCCEEEETTTEEEEESCCCCHHHHT----------
T ss_pred ccccccCCHHHH-HHHHhcccceeecCccccccccccC-CccccceeeEEEECCcEEEeeccccCccccc----------
Confidence 11 01122232 33333 1234554311100000 1234999999999999999999999743332
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhcC
Q 001225 524 PSLWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRS 590 (1120)
Q Consensus 524 ~~~~pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~ 590 (1120)
+. ..+|||++++++||+|.++++.|.++|+.....
T Consensus 192 ----------~~----------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~ 226 (506)
T 1v0w_A 192 ----------DT----------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQN 226 (506)
T ss_dssp ----------SS----------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------cC----------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhccc
Confidence 20 138999999999999999999999999987643
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=100.00 E-value=5.4e-34 Score=335.51 Aligned_cols=356 Identities=13% Similarity=0.106 Sum_probs=218.8
Q ss_pred CCceEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhC--CcEEEEEEccc---
Q 001225 373 DGSQAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKE--GIQVYILLYKE--- 447 (1120)
Q Consensus 373 ~gn~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~r--GVkVrILvyd~--- 447 (1120)
.||.++++.||.++|.++.++|++||++|+| ++|++.+ |..+..|.++|.+||+| ||+|+||+++.
T Consensus 25 ~~n~v~~l~~g~~~~~~l~~~I~~A~~~I~i-------~~~~~~~--d~~g~~l~~aL~~aa~r~~GV~Vril~D~~~~~ 95 (458)
T 3hsi_A 25 QAEQIEFLGSSAEFKTQIIELIRNAKKRIYV-------TALYWQK--DEAGQEILDEIYRVKQENPHLDVKVLIDWHRAQ 95 (458)
T ss_dssp CGGGEEECCCHHHHHHHHHHHHHTCSSEEEE-------EESCBCS--SHHHHHHHHHHHHHHHHSTTCEEEEEEETTGGG
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHhcCCEEEE-------EEEEEec--CcHHHHHHHHHHHHHhcCCCCEEEEEEECcccc
Confidence 5899999999999999999999999999999 6777776 67789999999999999 99999997542
Q ss_pred ---chhhhhh-cchhhHHHHHcccCCeEEE--Ec--CCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcC
Q 001225 448 ---VSIALKI-NSMYSKKRLLKIHENVKVL--RH--PDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKV 519 (1120)
Q Consensus 448 ---~~~al~~-~s~~~k~~L~~~~~nI~V~--r~--P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l 519 (1120)
+++.... +..+. ..|...++||+|. .| |..+ ...+.++|+|++|||++++ +||+||.
T Consensus 96 r~~~g~~~~~~~~~~~-~~L~~~g~nv~v~~~~f~~p~~~--~~~~~r~H~Ki~viD~~v~-~~G~Ni~----------- 160 (458)
T 3hsi_A 96 RNLLGAEKSATNADWY-CEQRQTYQLPDDPNMFFGVPINT--REVFGVLHVKGFVFDDTVL-YSGASIN----------- 160 (458)
T ss_dssp SCCC-----CCHHHHH-HHHHHHHTCTTCCCCEEEECSSS--SGGGCCEECCEEEETTEEE-EESCCBS-----------
T ss_pred ccccccccccccHHHH-HHHHhhCCCceEeeeecCCcccc--ccccCcceeeEEEECCCEE-EEeeecC-----------
Confidence 2221101 11221 3455556667665 44 5432 2356799999999999995 5569994
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHH--HHhhhcCCCCCCCC
Q 001225 520 GDCPPSLWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQR--WNHAKRSKAPNEQN 597 (1120)
Q Consensus 520 ~D~~~~~~pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qr--Wn~~~~~k~~~~~~ 597 (1120)
++|++.. .....|+|+. +.||.++|....|+++ |+... .
T Consensus 161 ----------d~y~~~~-------------------~~~~~drd~~--i~g~~~~D~~~~~~~~~~~~g~~---v----- 201 (458)
T 3hsi_A 161 ----------NVYLHQF-------------------EKYRYDRYQK--ITHAELADSMVNFINDYLLDFSA---V----- 201 (458)
T ss_dssp ----------TTTTTCS-------------------SCCEECCEEE--EECHHHHHHHHHHHHHTTCCTTT---C-----
T ss_pred ----------HHHhcCC-------------------cccCcchhhh--hcCchHHHHHHHHHHhhhhcCcc---c-----
Confidence 5666521 0113588844 8999999999999654 42110 0
Q ss_pred CCcccCCccccccccccccccccccCcccccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCccc
Q 001225 598 IPLLIPHHHMVLPHYMGRSREIGIDNKSTEENQKDLTRRDSFSSQSPSEDIPLLLPQESDKLVAPNVDDKSNGLNTNHNI 677 (1120)
Q Consensus 598 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1120)
.++ +.. . .+...
T Consensus 202 ~~l---------------------------------------------~~~-~-~~~~~--------------------- 213 (458)
T 3hsi_A 202 YPL---------------------------------------------DVT-N-RPRTK--------------------- 213 (458)
T ss_dssp EES---------------------------------------------SSS-C-CCCGG---------------------
T ss_pred hhh---------------------------------------------HHH-h-cccch---------------------
Confidence 000 000 0 00000
Q ss_pred ccccccCCCcccCCCCcccccccCCCccccccccCcchhhhhhhcccccccccccccchhhhhhccccccccccccCCCC
Q 001225 678 LDRTSGFYGSCTIPSNEYKTEALAPNSKIRGTIDGLDAVDLQREMNSNSVREFGLDKREEWWEKTEENHDIYSSKCGQVG 757 (1120)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (1120)
.+... .. .+ . +.+ ... ..+.. .. .
T Consensus 214 -----~~~~~---------~~---------~~-------~-------~~l------------~~~-~~~~~-----~~-~ 237 (458)
T 3hsi_A 214 -----EIRGN---------IR---------AY-------R-------KDL------------AQN-GEYSL-----KS-A 237 (458)
T ss_dssp -----GTHHH---------HH---------HH-------H-------HHH------------HHH-CCCCC-----SS-C
T ss_pred -----hhHHH---------HH---------HH-------H-------Hhh------------hhc-ccccc-----cc-c
Confidence 00000 00 00 0 000 000 00000 00 0
Q ss_pred CCCcceEEEeecCcccCCCCCCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 001225 758 PRLACRCQIIRSVSQWSAGTSQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKY 837 (1120)
Q Consensus 758 ~~~~~~vQilRS~~~WS~G~~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~g 837 (1120)
..+...+|+..-+ |+...+..|..+|+++|.+|++.|||+|+||+++ ..+.+||..+ +++|
T Consensus 238 ~~~~~~~~v~p~~-----~~~~~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~--------~~~~~aL~~A------a~rG 298 (458)
T 3hsi_A 238 VKLPNVLSVSPLF-----GLGASGNELNQVIEDLFLQVQKKLVICTPYFNFP--------RTLQHKIATL------LENG 298 (458)
T ss_dssp BSSCSSCEEEEEE-----EESSSSCHHHHHHHHHHHTCSSEEEEECSSSCCC--------HHHHHHHHHH------HTTT
T ss_pred CCCCceEEEecCC-----CCCCchhHHHHHHHHHHHhcccEEEEEEeccCCC--------HHHHHHHHHH------HHCC
Confidence 0112234554411 1112366899999999999999999999999986 2577777653 4679
Q ss_pred eEEEEEecCCC--CCCCCCCCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHhhhC---CCccceeeEeeeccccccCCCC
Q 001225 838 FRVIVVLPLIP--GFQGGIDDG-GAATVRAIIHWQYRTISREKTSILHKLSMLLG---PKTRDYISFYGLRSYGRLCDGG 911 (1120)
Q Consensus 838 v~V~IVlP~~P--~f~g~~~d~-~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G---~~~~~Yi~f~~Lr~~~~~~~~g 911 (1120)
|+|.||+|... +|-+.-+.+ ...+.+ .+-|..+.+.-..-++.|.+ .| +.+++| .++
T Consensus 299 V~VrIi~~~~~and~y~~~~~~~~~~~~~---~~lye~~~~~f~~~~~~l~~-~G~i~V~i~~~-------------~~~ 361 (458)
T 3hsi_A 299 KRVEIIVGDKVANDFYIPPEQPFKMAGAL---PYLYESNLRRFCEKFETQIE-SGQLVVRLWRD-------------GDN 361 (458)
T ss_dssp CEEEEEEECGGGSTTCCCTTSCCCGGGGH---HHHHHHHHHHHHHHTHHHHH-HTSEEEEEECB-------------TTB
T ss_pred CeEEEEECCccccCCccCCcchhhhhcch---HHHHHHhhhhhHHHHHHHHh-CCCeEEEEEec-------------CCC
Confidence 99999999763 221110000 001111 11222222111112345666 56 333332 233
Q ss_pred CccccceeeeeeEEEEeccEEEEcccccccCCCCCCCCceeeEEEEccc
Q 001225 912 PVATSQVYVHSKVMIIDDRAALIGSSNINDRSLLGSRDSEIDVVIEDKE 960 (1120)
Q Consensus 912 ~~vte~iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~ 960 (1120)
++|+|+|||||++++|||+|+|.||+. +|.|++++|+|++
T Consensus 362 -------~lHaK~~vvD~~~~~vGS~N~d~RS~~--lN~E~~~~i~~~~ 401 (458)
T 3hsi_A 362 -------TYHLKGVWVDDRYILLTGNNLNPRAWR--LDAENGLLIYDPQ 401 (458)
T ss_dssp -------EECCCEEEETTTEEEEECCCCSHHHHH--TCEEEEEEEECTT
T ss_pred -------ceeEEEEEECCeEEEecCCCCCcchhh--hCceeEEEEeCCc
Confidence 999999999999999999999999995 9999999999986
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.85 E-value=1.3e-20 Score=230.39 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=106.1
Q ss_pred EEEecHHHHHHHHHHHHHhhce-----EEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhh
Q 001225 378 QWFIDGQAAFEAIASAIKNAKS-----QILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIAL 452 (1120)
Q Consensus 378 ~~lvDG~~yf~al~~aI~~Ak~-----~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al 452 (1120)
.++.++.+.|.++.+.|++|++ +|+| ..|.+.+ ...+.++|.+||++||+|+||+ +..+...
T Consensus 340 ~ll~~P~~sf~~v~~~I~~A~~dp~v~~I~i-------t~Y~~~~-----d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~ 406 (687)
T 1xdp_A 340 VLLYYPYHTFEHVLELLRQASFDPSVLAIKI-------NIYRVAK-----DSRIIDSMIHAAHNGKKVTVVV-ELQARFD 406 (687)
T ss_dssp EEEEETTBCTHHHHHHHHHHHHCTTEEEEEE-------EESSCCT-----TCHHHHHHHHHHHTTCEEEEEE-CTTCSST
T ss_pred EEEECchhhhhhHHHHHHHHhhCCcceEEEE-------EeeeecC-----cHHHHHHHHHHHhcCCEEEEEE-CCCcccc
Confidence 4777888889999999999997 9999 4566533 2789999999999999999997 4433111
Q ss_pred -hhcchhhHHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEe----CCe---EEEccccCCCCCcCCCCCcCCCCCC
Q 001225 453 -KINSMYSKKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVD----YRI---SFIGGLDLCFGRYDTIEHKVGDCPP 524 (1120)
Q Consensus 453 -~~~s~~~k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID----~~v---AFvGGinL~~GRwDt~~H~l~D~~~ 524 (1120)
..+..+. +.|.. +||+|..+.. .++.|+|++||| +++ ||+||.|+...
T Consensus 407 ~~~n~~~~-~~L~~--aGV~V~~~~~-------~~k~H~Ki~VID~re~~~i~~~a~iGS~N~d~r-------------- 462 (687)
T 1xdp_A 407 EEANIHWA-KRLTE--AGVHVIFSAP-------GLKIHAKLFLISRKENGEVVRYAHIGTGNFNEK-------------- 462 (687)
T ss_dssp TTTTTTTT-HHHHH--HTCEEEECCT-------TCEECCEEEEEEEEETTEEEEEEEEESSCSCTT--------------
T ss_pred hhhHHHHH-HHHHH--CCCEEEEecC-------CccccceEEEEEeccCCeEEEEEEEeCCcCCcc--------------
Confidence 1122333 44543 6899876532 247999999999 577 99999998410
Q ss_pred CCCCCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeCh-HHHHHHHHHHHHHHhh
Q 001225 525 SLWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGP-PCRDIARHFVQRWNHA 587 (1120)
Q Consensus 525 ~~~pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gp-aa~dl~~~F~qrWn~~ 587 (1120)
....|+|+++.+.|| +|.++++.|...|+..
T Consensus 463 --------------------------------s~~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s 494 (687)
T 1xdp_A 463 --------------------------------TARLYTDYSLLTADARITNEVRRVFNFIENPY 494 (687)
T ss_dssp --------------------------------GGGTEEEEEEEECCHHHHHHHHHHHHHHHCTT
T ss_pred --------------------------------hhhhcceEEEEEeCHHHHHHHHHHHHHHHhhc
Confidence 012589999999986 6999999999999653
No 4
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.85 E-value=4.2e-21 Score=233.27 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=101.1
Q ss_pred EEEecHHHHHHHHHHHHHhhce-----EEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhh
Q 001225 378 QWFIDGQAAFEAIASAIKNAKS-----QILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIAL 452 (1120)
Q Consensus 378 ~~lvDG~~yf~al~~aI~~Ak~-----~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al 452 (1120)
-++.++.+.|.++.++|++|++ +|.+ ++|++.+ + .++.++|.+||++||+|+||+ + .++..
T Consensus 345 iLl~~p~~sf~~vi~~I~~A~~DP~V~sIk~-------tlYr~~~--d---s~Iv~ALi~AA~rGv~V~vLv-e-l~arf 410 (705)
T 2o8r_A 345 YLIHVPYYTYDYVVRLLMEAAISPDVSEIRL-------TQYRVAE--N---SSIISALEAAAQSGKKVSVFV-E-LKARF 410 (705)
T ss_dssp EEEEETTBCSHHHHHHHHHHHTCTTEEEEEE-------EESCCCS--C---CHHHHHHHHHHHTTCEEEEEE-C-CCSCC
T ss_pred eEeeChhHhHHHHHHHHHHhccCCCceEEEE-------EEEEEcC--C---HHHHHHHHHHHHCCCEEEEEE-e-CCCCc
Confidence 4788999999999999999999 9999 6888764 2 799999999999999999997 4 33322
Q ss_pred h--hcchhhHHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEeCC--eEEEccccCCCCCcCCCCCcCCCCCCCCCC
Q 001225 453 K--INSMYSKKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYR--ISFIGGLDLCFGRYDTIEHKVGDCPPSLWP 528 (1120)
Q Consensus 453 ~--~~s~~~k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~--vAFvGGinL~~GRwDt~~H~l~D~~~~~~p 528 (1120)
. -|..+. +.|.. +||+|... ...+++|+|++|||++ ++ ||+. || -|.
T Consensus 411 dee~ni~wa-~~Le~--aGv~Vv~g-------~~~lk~H~Ki~lIdrr~~~~--g~~~----~y---~~i---------- 461 (705)
T 2o8r_A 411 DEENNLRLS-ERMRR--SGIRIVYS-------MPGLKVHAKTALILYHTPAG--ERPQ----GI---ALL---------- 461 (705)
T ss_dssp ----CHHHH-HHHHH--HTCEEEEC-------CTTCCBCCCEEEEEECCCSS--SCCC----EE---EEE----------
T ss_pred chhhhHHHH-HHHHH--CCCEEEEc-------cCCCCceeEEEEEecccccC--Ccee----EE---Eec----------
Confidence 1 133443 45554 68998642 1347899999999999 87 7652 11 010
Q ss_pred CCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeCh-HHHHHHHHHHHHH
Q 001225 529 GKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGP-PCRDIARHFVQRW 584 (1120)
Q Consensus 529 G~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gp-aa~dl~~~F~qrW 584 (1120)
|--.+|. .+. .-|.|+++.+.+| ++.|++..|...|
T Consensus 462 gtGN~n~-------------------~ta-riy~D~~l~t~~~~i~~dl~~vF~~~t 498 (705)
T 2o8r_A 462 STGNFNE-------------------TTA-RIYSDTTLMTANTDIVHDVYRLFRILD 498 (705)
T ss_dssp ESSCSSC-------------------CCS-SCEEEEEEEECCHHHHHHHHHHHHHHT
T ss_pred cccceee-------------------eEE-EEEeeeeeeecChHHHHHHHHHHHHHh
Confidence 0001111 111 2478888888875 5699999996555
No 5
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.57 E-value=2.5e-15 Score=158.04 Aligned_cols=144 Identities=16% Similarity=0.203 Sum_probs=102.6
Q ss_pred CceEEEEecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhh
Q 001225 374 GSQAQWFIDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALK 453 (1120)
Q Consensus 374 gn~v~~lvDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~ 453 (1120)
++....|.+|++.|.+|+++|++||++|+| ++|++.. ..|.++|.+||+|||+||||+++.... .
T Consensus 35 ~~~~~~~~~~~~~~~~ll~~I~~A~~sI~i-------~~y~~~~------~~i~~aL~~aa~rGV~Vrii~D~~~~~-~- 99 (196)
T 4ggj_A 35 SGCPCSLPHSESSLSRLLRALLAARSSLEL-------CLFAFSS------PQLGRAVQLLHQRGVRVRVITDCDYMA-L- 99 (196)
T ss_dssp --CCCSSCCSCCHHHHHHHHHHTCSSEEEE-------EESCBCC------HHHHHHHHHHHHTTCEEEEEESSCCC----
T ss_pred CCceeecCCcHHHHHHHHHHHHHhheEEEE-------EEEEeCC------HHHHHHHHHHHHcCCcEEEEEeccccc-c-
Confidence 344556789999999999999999999999 6777753 579999999999999999997443211 1
Q ss_pred hcchhhHHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCCC
Q 001225 454 INSMYSKKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDYY 533 (1120)
Q Consensus 454 ~~s~~~k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY~ 533 (1120)
-.+.+ ..|. ..||+|..+.. ....|+|++|||++++|+||.|++..
T Consensus 100 ~~~~~--~~l~--~~gi~v~~~~~-------~~~~H~K~~viD~~~~~~GS~N~t~~----------------------- 145 (196)
T 4ggj_A 100 NGSQI--GLLR--KAGIQVRHDQD-------LGYMHHKFAIVDKKVLITGSLNWTTQ----------------------- 145 (196)
T ss_dssp -CCHH--HHHH--HTTCEEEECCS-------SSCCCCEEEEETTTEEEEESCCBCHH-----------------------
T ss_pred cHHHH--HHHH--hcCCCcccccc-------cccccCcEEEEcceEEEecCccCChh-----------------------
Confidence 11222 3343 36899864421 13579999999999999999998510
Q ss_pred CCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEe-ChHHHHHHHHHHHHHHhhhc
Q 001225 534 NPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALW-GPPCRDIARHFVQRWNHAKR 589 (1120)
Q Consensus 534 n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~-Gpaa~dl~~~F~qrWn~~~~ 589 (1120)
.+. ..| +..+.+. +++|..+.+.|.+.|+....
T Consensus 146 ----------------~~~------~n~-E~~~~i~~~~~~~~~~~~F~~~W~~~~p 179 (196)
T 4ggj_A 146 ----------------AIQ------NNR-ENVLIMEDTEYVRLFLEEFERIWEEFDP 179 (196)
T ss_dssp ----------------HHH------HCC-EEEEEECCHHHHHHHHHHHHHHHHHTCC
T ss_pred ----------------hhc------ccc-eeEEEEECHHHHHHHHHHHHHHHHhCCC
Confidence 000 123 3344444 56799999999999997653
No 6
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.48 E-value=1.8e-13 Score=136.93 Aligned_cols=121 Identities=24% Similarity=0.243 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchh
Q 001225 781 EGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAA 860 (1120)
Q Consensus 781 E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~ 860 (1120)
+.++.++++++|.+|+++|+|+++|| +. ..|.+||.++ +++||+|+|+++..+.. . .
T Consensus 12 ~~~~~~~~~~~i~~A~~~I~i~~~~~-~~--------~~i~~aL~~a------~~rGV~Vril~~~~~~~-----~--~- 68 (155)
T 1byr_A 12 EGSARVLVLSAIDSAKTSIRMMAYSF-TA--------PDIMKALVAA------KKRGVDVKIVIDERGNT-----G--R- 68 (155)
T ss_dssp TTHHHHHHHHHHHHCSSEEEEEESSB-CC--------HHHHHHHHHH------HHTTCEEEEEEESTTCC-----S--H-
T ss_pred CCcHHHHHHHHHHHHhhEEEEEEEEe-CC--------HHHHHHHHHH------HHCCCEEEEEEeCcccc-----c--c-
Confidence 34799999999999999999999888 32 2577777653 24699999999965321 0 0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEeccEEEEcccccc
Q 001225 861 TVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDDRAALIGSSNIN 940 (1120)
Q Consensus 861 ~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN 940 (1120)
...+.++.|.+ .|+++..+ . ..+ .+|+|+|||||+++++||+|++
T Consensus 69 ---------------~~~~~~~~L~~-~gv~v~~~----~--------~~~-------~~H~K~~iiD~~~~~iGS~N~~ 113 (155)
T 1byr_A 69 ---------------ASIAAMNYIAN-SGIPLRTD----S--------NFP-------IQHDKVIIVDNVTVETGSFNFT 113 (155)
T ss_dssp ---------------HHHHHHHHHHH-TTCCEEEE----C--------SSS-------CCCCCEEEETTTEEEEESCCBS
T ss_pred ---------------ccHHHHHHHHH-CCCeEEEc----C--------Ccc-------cccceEEEECCCEEEEECCCCC
Confidence 11235567777 68765432 1 122 7899999999999999999999
Q ss_pred cCCCCCCCCceeeEEEEcc-ch
Q 001225 941 DRSLLGSRDSEIDVVIEDK-EF 961 (1120)
Q Consensus 941 ~RSm~G~~DsEi~v~i~D~-~~ 961 (1120)
.||+. .+.|+++.|.|. ++
T Consensus 114 ~~~~~--~n~E~~~~i~~~~~l 133 (155)
T 1byr_A 114 KAAET--KNSENAVVIWNMPKL 133 (155)
T ss_dssp HHHHH--TSCEEEEEEESCHHH
T ss_pred ccccc--cCcccEEEEcCcHHH
Confidence 99994 899999999994 54
No 7
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.46 E-value=3.6e-13 Score=134.66 Aligned_cols=143 Identities=17% Similarity=0.262 Sum_probs=103.9
Q ss_pred eEEEEe-cHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhh
Q 001225 376 QAQWFI-DGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKI 454 (1120)
Q Consensus 376 ~v~~lv-DG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~ 454 (1120)
.++++. .+.+++.++.++|++|+++|+|+.++++ ...|.++|.+|++|||+|+||+.+..... ..
T Consensus 4 ~v~~~f~p~~~~~~~~~~~i~~A~~~I~i~~~~~~-------------~~~i~~aL~~a~~rGV~Vril~~~~~~~~-~~ 69 (155)
T 1byr_A 4 SVQVGYSPEGSARVLVLSAIDSAKTSIRMMAYSFT-------------APDIMKALVAAKKRGVDVKIVIDERGNTG-RA 69 (155)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHCSSEEEEEESSBC-------------CHHHHHHHHHHHHTTCEEEEEEESTTCCS-HH
T ss_pred ceEEEECCCCcHHHHHHHHHHHHhhEEEEEEEEeC-------------CHHHHHHHHHHHHCCCEEEEEEeCccccc-cc
Confidence 456665 4567899999999999999999654442 15799999999999999999975432210 01
Q ss_pred cchhhHHHHHcccCCeEEEEcCCCCCcccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCCCCCCCCC
Q 001225 455 NSMYSKKRLLKIHENVKVLRHPDHVSTGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLWPGKDYYN 534 (1120)
Q Consensus 455 ~s~~~k~~L~~~~~nI~V~r~P~~~~~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~pG~dY~n 534 (1120)
+..+ ...|. ..|++|..++. ....|.|++|||++++++||.|++..
T Consensus 70 ~~~~-~~~L~--~~gv~v~~~~~-------~~~~H~K~~iiD~~~~~iGS~N~~~~------------------------ 115 (155)
T 1byr_A 70 SIAA-MNYIA--NSGIPLRTDSN-------FPIQHDKVIIVDNVTVETGSFNFTKA------------------------ 115 (155)
T ss_dssp HHHH-HHHHH--HTTCCEEEECS-------SSCCCCCEEEETTTEEEEESCCBSHH------------------------
T ss_pred cHHH-HHHHH--HCCCeEEEcCC-------cccccceEEEECCCEEEEECCCCCcc------------------------
Confidence 1111 13343 36788765532 12689999999999999999999510
Q ss_pred CCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeCh--HHHHHHHHHHHHHHhhh
Q 001225 535 PRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGP--PCRDIARHFVQRWNHAK 588 (1120)
Q Consensus 535 ~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gp--aa~dl~~~F~qrWn~~~ 588 (1120)
....|++.++.+.|+ .|.++...|.+.|+.+.
T Consensus 116 ----------------------~~~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 116 ----------------------AETKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp ----------------------HHHTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ----------------------ccccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 002467899999994 89999999999997653
No 8
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.41 E-value=1.6e-13 Score=144.22 Aligned_cols=118 Identities=24% Similarity=0.257 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchhHH
Q 001225 783 SIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAATV 862 (1120)
Q Consensus 783 sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~~~ 862 (1120)
+...+++++|.+|++.|+|+. |++++ ..|++||.++ +++||+|+||+...- ...
T Consensus 46 ~~~~~ll~~I~~A~~sI~i~~-y~~~~--------~~i~~aL~~a------a~rGV~Vrii~D~~~-----~~~------ 99 (196)
T 4ggj_A 46 SSLSRLLRALLAARSSLELCL-FAFSS--------PQLGRAVQLL------HQRGVRVRVITDCDY-----MAL------ 99 (196)
T ss_dssp CHHHHHHHHHHTCSSEEEEEE-SCBCC--------HHHHHHHHHH------HHTTCEEEEEESSCC-----C--------
T ss_pred HHHHHHHHHHHHhheEEEEEE-EEeCC--------HHHHHHHHHH------HHcCCcEEEEEeccc-----ccc------
Confidence 567889999999999999997 66654 2688888764 357999999996321 000
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEeccEEEEcccccccC
Q 001225 863 RAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDDRAALIGSSNINDR 942 (1120)
Q Consensus 863 r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN~R 942 (1120)
..+.+..|.+ .|+++..+ . ..+ ++|+|+||||++++++||+|++.+
T Consensus 100 --------------~~~~~~~l~~-~gi~v~~~----~--------~~~-------~~H~K~~viD~~~~~~GS~N~t~~ 145 (196)
T 4ggj_A 100 --------------NGSQIGLLRK-AGIQVRHD----Q--------DLG-------YMHHKFAIVDKKVLITGSLNWTTQ 145 (196)
T ss_dssp ---------------CCHHHHHHH-TTCEEEEC----C--------SSS-------CCCCEEEEETTTEEEEESCCBCHH
T ss_pred --------------cHHHHHHHHh-cCCCcccc----c--------ccc-------cccCcEEEEcceEEEecCccCChh
Confidence 0122455666 78765321 0 122 689999999999999999999999
Q ss_pred CCCCCCCceeeEEEEccchh
Q 001225 943 SLLGSRDSEIDVVIEDKEFL 962 (1120)
Q Consensus 943 Sm~G~~DsEi~v~i~D~~~v 962 (1120)
|+. .|.|..+++.|++.+
T Consensus 146 ~~~--~n~E~~~~i~~~~~~ 163 (196)
T 4ggj_A 146 AIQ--NNRENVLIMEDTEYV 163 (196)
T ss_dssp HHH--HCCEEEEEECCHHHH
T ss_pred hhc--ccceeEEEEECHHHH
Confidence 995 899999999988754
No 9
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.34 E-value=1.9e-12 Score=137.30 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=102.0
Q ss_pred ecHHHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhcchhhH
Q 001225 381 IDGQAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKINSMYSK 460 (1120)
Q Consensus 381 vDG~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~s~~~k 460 (1120)
-++.+.++.|+++|++||++|+| ++|++.. ..|.++|.+||+|||+||||+ |...... ..+.+
T Consensus 54 ~~~~~~~~~ii~~I~~A~~sI~i-------~~Y~~~~------~~I~~aL~~Aa~RGV~VRii~-D~~~~~~-~~~~~-- 116 (220)
T 4gel_A 54 HCSLRNVAKIVEQIDRAVYSIDL-------AIYTFTS------LFLADSIKRALQRGVIIRIIS-DGEMVYS-KGSQI-- 116 (220)
T ss_dssp TCHHHHHHHHHHHHHTCSSEEEE-------ECSCBCC------HHHHHHHHHHHHHTCEEEEEC-CTTTTTS-TTCHH--
T ss_pred cCcHHHHHHHHHHHHHhhhEEEE-------EEEEeCC------HHHHHHHHHHHHcCCeEEEEE-echhhhh-hHHHH--
Confidence 35789999999999999999999 6777753 579999999999999999997 4332211 11112
Q ss_pred HHHHcccCCeEEEEc-CC---CCC---------cccccccCcceEEEEeCCeEEEccccCCCCCcCCCCCcCCCCCCCCC
Q 001225 461 KRLLKIHENVKVLRH-PD---HVS---------TGVYLWSHHEKLVIVDYRISFIGGLDLCFGRYDTIEHKVGDCPPSLW 527 (1120)
Q Consensus 461 ~~L~~~~~nI~V~r~-P~---~~~---------~~~~~~rhH~KivVID~~vAFvGGinL~~GRwDt~~H~l~D~~~~~~ 527 (1120)
..+.. .++.+... +. |.. ....+.+.|+|++|||+.++++||.|++. .
T Consensus 117 ~~~~~--~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~~v~~GS~N~t~-----~------------ 177 (220)
T 4gel_A 117 SMLAQ--LGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYSIVISGSVNWTA-----L------------ 177 (220)
T ss_dssp HHHHH--TTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCCEEEEESCCBSH-----H------------
T ss_pred HHHHh--cCCcEEeecccccccceeEEEcchhcccccccccceeccccccceEEecCccccc-----c------------
Confidence 22222 34443322 11 100 01234577888888889999999999841 0
Q ss_pred CCCCCCCCCCCCCCCccchhhhhhhcCCCCCCCeEeeeeEEeChHHHHHHHHHHHHHHhhhc
Q 001225 528 PGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKR 589 (1120)
Q Consensus 528 pG~dY~n~r~~d~~~~~~~~~~~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~ 589 (1120)
.+ ...|.|+.+...|++|.++++.|.+.|+....
T Consensus 178 ----------------------s~------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~ 211 (220)
T 4gel_A 178 ----------------------GL------GGNWENCIITADDKLTATFQAEFQRMWRAFAK 211 (220)
T ss_dssp ----------------------HH------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSEE
T ss_pred ----------------------cc------ccCceEEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 00 13588998888999999999999999997643
No 10
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.11 E-value=8.4e-11 Score=144.14 Aligned_cols=120 Identities=20% Similarity=0.296 Sum_probs=88.8
Q ss_pred HHHHHHHHHhccC-----eEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCch
Q 001225 785 HSAYCSLIESAEH-----FIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGA 859 (1120)
Q Consensus 785 ~~ayl~aI~~A~h-----~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~ 859 (1120)
..+++++|.+|++ .|+| ++||++.. ..|.+||.++ +++|++|.|++|..+.|...-
T Consensus 349 f~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d-------~~I~~AL~~A------A~rGV~VrVLvd~~a~~~~~~----- 409 (687)
T 1xdp_A 349 FEHVLELLRQASFDPSVLAIKI-NIYRVAKD-------SRIIDSMIHA------AHNGKKVTVVVELQARFDEEA----- 409 (687)
T ss_dssp THHHHHHHHHHHHCTTEEEEEE-EESSCCTT-------CHHHHHHHHH------HHTTCEEEEEECTTCSSTTTT-----
T ss_pred hhhHHHHHHHHhhCCcceEEEE-EeeeecCc-------HHHHHHHHHH------HhcCCEEEEEECCCcccchhh-----
Confidence 3567899999997 9999 89999431 2688888764 347999999999875432100
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEec----cE---E
Q 001225 860 ATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDD----RA---A 932 (1120)
Q Consensus 860 ~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD----~~---~ 932 (1120)
..+.+++|.+ +|+.+..| ..| ..+|+|+||||+ ++ +
T Consensus 410 -----------------n~~~~~~L~~-aGV~V~~~-------------~~~------~k~H~Ki~VID~re~~~i~~~a 452 (687)
T 1xdp_A 410 -----------------NIHWAKRLTE-AGVHVIFS-------------APG------LKIHAKLFLISRKENGEVVRYA 452 (687)
T ss_dssp -----------------TTTTTHHHHH-HTCEEEEC-------------CTT------CEECCEEEEEEEEETTEEEEEE
T ss_pred -----------------HHHHHHHHHH-CCCEEEEe-------------cCC------ccccceEEEEEeccCCeEEEEE
Confidence 0124466777 78876433 122 249999999994 54 9
Q ss_pred EEcccccccCCCCCCCCceeeEEEEccchh
Q 001225 933 LIGSSNINDRSLLGSRDSEIDVVIEDKEFL 962 (1120)
Q Consensus 933 iIGSANiN~RSm~G~~DsEi~v~i~D~~~v 962 (1120)
.|||+|+|.||+. .++|+++.+.|++.+
T Consensus 453 ~iGS~N~d~rs~~--~n~D~~l~i~~~~i~ 480 (687)
T 1xdp_A 453 HIGTGNFNEKTAR--LYTDYSLLTADARIT 480 (687)
T ss_dssp EEESSCSCTTGGG--TEEEEEEEECCHHHH
T ss_pred EEeCCcCCcchhh--hcceEEEEEeCHHHH
Confidence 9999999999994 899999999987643
No 11
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.08 E-value=3.6e-10 Score=112.86 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=89.2
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQY-KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVA 135 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~h-G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 135 (1120)
+|.|+++|+...+. ..++|+|+++. +.-.|+|+|||+||..||.+|+. . .|....
T Consensus 8 ~v~V~~~ek~~~~~---~~~~Y~I~V~~~~~~~~~V~RRYsdF~~Lh~~L~~-----~--------------fp~~~g-- 63 (141)
T 1kq6_A 8 HIALLGFEKRFVPS---QHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKE-----M--------------FPIEAG-- 63 (141)
T ss_dssp EEEEEEEEEECSSS---CEEEEEEEEEETTCCEEEEEECHHHHHHHHHHHHH-----H--------------CTTTTT--
T ss_pred EEEEccEEEecCCC---CeEEEEEEEEEcCCCEEEEEecHHHHHHHHHHHHH-----H--------------Cchhhc--
Confidence 78999998532211 24679999997 44689999999999999998874 1 111000
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccccHHHHHHHHHHHHHHHHHhhcc-cccchhccccceecc
Q 001225 136 VVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQTVAERAKVAMQGYLNHFMGNID-IVNSREVCKFLEVSR 214 (1120)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~~~~~rrr~~LE~YL~~LL~~~~-~~~~~~l~~FLEvS~ 214 (1120)
.-....+.+|+ ||. +..+++..+.+.|+.+||.||+.||..+. +.++..+..||+.+.
T Consensus 64 -----------------~~~~~~~~lP~---lP~-K~~~~~~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~ 122 (141)
T 1kq6_A 64 -----------------AINPENRIIPH---LPA-PKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRP 122 (141)
T ss_dssp -----------------SSCGGGCCSCC---CCC-CCCCCSHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCH
T ss_pred -----------------ccCccccccCC---CCC-ccccCCHHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCc
Confidence 00112345666 553 33456667777888999999999998765 689999999999999
Q ss_pred cccccccC--CcceeeEE
Q 001225 215 LSFSEEYG--PKLKEGYV 230 (1120)
Q Consensus 215 lsf~~~~G--~KgkEG~l 230 (1120)
..+.+..+ .|-.|-||
T Consensus 123 ~d~~~~~~~~~~~~~~~~ 140 (141)
T 1kq6_A 123 DDLKLPTDNQTKKPETYL 140 (141)
T ss_dssp HHHSCCCCTTSCCCEEEE
T ss_pred cccCCCCCCcCCCcceee
Confidence 98765433 24445444
No 12
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.08 E-value=3e-10 Score=112.10 Aligned_cols=104 Identities=20% Similarity=0.334 Sum_probs=78.7
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAV 136 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 136 (1120)
.++|++.+...+ .++|+|+++.+...|+|.|||+||..||.+|+. . .|+
T Consensus 24 ~v~I~~~~~~~~------y~~Y~I~v~~~~~~~~V~RRYSdF~~L~~~L~~-----~--------------~~~------ 72 (130)
T 3p0c_A 24 EARVVGSELVDT------YTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVA-----E--------------RKI------ 72 (130)
T ss_dssp EEEEEEEECSSS------SCEEEEEEECSSCEEEEEEEHHHHHHHHHHHHH-----T--------------TSS------
T ss_pred EEEEEeccccCC------EEEEEEEEEECCeEEEEEehHHHHHHHHHHHHH-----H--------------cCC------
Confidence 577777765433 679999999999999999999999999998875 0 000
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceecc
Q 001225 137 VQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSR 214 (1120)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~ 214 (1120)
.+|+ ||. |..+|+. .+.++||++||.||+.|+..+.+..+..+.+||+.+.
T Consensus 73 -----------------------~~p~---lP~-K~~~g~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~ 125 (130)
T 3p0c_A 73 -----------------------DKNL---LPP-KKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHF 125 (130)
T ss_dssp -----------------------CTTS---CCC-CCCCSCCCSCSHHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSCT
T ss_pred -----------------------CCCC---CCC-ccccccCCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCCc
Confidence 0122 221 3334442 6677777899999999999999999999999999999
Q ss_pred cccc
Q 001225 215 LSFS 218 (1120)
Q Consensus 215 lsf~ 218 (1120)
+++.
T Consensus 126 ~~~~ 129 (130)
T 3p0c_A 126 YEIN 129 (130)
T ss_dssp TC--
T ss_pred cccc
Confidence 8753
No 13
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.07 E-value=2.3e-10 Score=114.37 Aligned_cols=118 Identities=16% Similarity=0.248 Sum_probs=85.5
Q ss_pred CCC-ceEEeeeeccCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccc
Q 001225 54 ELP-KATIVAVSRPDSSDISPMLLSYTIELQY-KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIV 131 (1120)
Q Consensus 54 ~~p-~~~I~~ver~~s~~~~~~~~~YtIeL~h-G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~ 131 (1120)
..| +|+|.++++..+.. ..++|+|+++. +...|+|.|||+||..||.+|+. .+ |.
T Consensus 18 ~~~i~v~I~~~e~~~~~~---~~~vY~I~v~~~~~~~~~V~RRYsdF~~Lh~~L~~-----~~--------------p~- 74 (143)
T 1h6h_A 18 DVAISANIADIEEKRGFT---SHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEE-----RF--------------GP- 74 (143)
T ss_dssp TCEEEEEEEEEEEECSSS---CEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHH-----HH--------------ST-
T ss_pred CCeEEEEEcCccccCCCC---CeEEEEEEEEEcCCCEEEEEeeHHHHHHHHHHHHH-----HC--------------cc-
Confidence 345 89999998754432 36889999985 56899999999999999998884 10 00
Q ss_pred cccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc-cHHHHHHHHHHHHHHHHHhhcc-cccchhcccc
Q 001225 132 DQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ-TVAERAKVAMQGYLNHFMGNID-IVNSREVCKF 209 (1120)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~-~~~~rrr~~LE~YL~~LL~~~~-~~~~~~l~~F 209 (1120)
. ..-....+.+|+ ||. |..+++. .+.++|+++||.||+.|+..+. +.++..+.+|
T Consensus 75 -~------------------~~~~~~~~~lP~---lP~-K~~~~~~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~F 131 (143)
T 1h6h_A 75 -D------------------SKSSALACTLPT---LPA-KVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIF 131 (143)
T ss_dssp -T------------------CSCGGGCCCCCC---CCC-CCCSSCHHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHH
T ss_pred -c------------------cccCCCCCCccc---CCC-CcccCcCHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHH
Confidence 0 000112345666 553 3335554 6777788999999999998887 7899999999
Q ss_pred ceeccccc
Q 001225 210 LEVSRLSF 217 (1120)
Q Consensus 210 LEvS~lsf 217 (1120)
|+.+...+
T Consensus 132 l~~~~~d~ 139 (143)
T 1h6h_A 132 FYQSPYDS 139 (143)
T ss_dssp HSCCHHHH
T ss_pred hCCCcccc
Confidence 99987654
No 14
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.02 E-value=7.5e-10 Score=117.38 Aligned_cols=136 Identities=17% Similarity=0.069 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchhH
Q 001225 782 GSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAAT 861 (1120)
Q Consensus 782 ~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~~ 861 (1120)
....+..+++|.+|++.|+|+. |++++ ..|++||.++ +++||+|+||+..... ....
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~-Y~~~~--------~~I~~aL~~A------a~RGV~VRii~D~~~~-----~~~~--- 113 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAI-YTFTS--------LFLADSIKRA------LQRGVIIRIISDGEMV-----YSKG--- 113 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEC-SCBCC--------HHHHHHHHHH------HHHTCEEEEECCTTTT-----TSTT---
T ss_pred HHHHHHHHHHHHHhhhEEEEEE-EEeCC--------HHHHHHHHHH------HHcCCeEEEEEechhh-----hhhH---
Confidence 3566778999999999999996 77765 2678887764 3459999999964321 1100
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccC-CCCC--ccccceeeeeeEEEEeccEEEEcccc
Q 001225 862 VRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLC-DGGP--VATSQVYVHSKVMIIDDRAALIGSSN 938 (1120)
Q Consensus 862 ~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~-~~g~--~vte~iyvHSKlmIVDD~~~iIGSAN 938 (1120)
+.+..|.. .|+....+. .....|.++. -.|. ...-.-..|.|++|+|++++++||+|
T Consensus 114 -----------------~~~~~~~~-~~~~~~~~~--~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~~v~~GS~N 173 (220)
T 4gel_A 114 -----------------SQISMLAQ-LGVPVRVPI--TTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYSIVISGSVN 173 (220)
T ss_dssp -----------------CHHHHHHH-TTCCEEECC--SSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCCEEEEESCC
T ss_pred -----------------HHHHHHHh-cCCcEEeec--ccccccceeEEEcchhcccccccccceeccccccceEEecCcc
Confidence 11233444 344322110 0000111100 0000 00011245777777778999999999
Q ss_pred cccCCCCCCCCceeeEEEEccchh
Q 001225 939 INDRSLLGSRDSEIDVVIEDKEFL 962 (1120)
Q Consensus 939 iN~RSm~G~~DsEi~v~i~D~~~v 962 (1120)
++.+|+. .+.|..+++.|++++
T Consensus 174 ~t~~s~~--~N~E~~~vi~~~~~a 195 (220)
T 4gel_A 174 WTALGLG--GNWENCIITADDKLT 195 (220)
T ss_dssp BSHHHHH--TSBEEEEEECCHHHH
T ss_pred ccccccc--cCceEEEEEECHHHH
Confidence 9999995 799999999987754
No 15
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=98.99 E-value=2.3e-09 Score=126.48 Aligned_cols=155 Identities=16% Similarity=0.227 Sum_probs=97.3
Q ss_pred ceEEEeecCcccCCCCCCchhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEE
Q 001225 762 CRCQIIRSVSQWSAGTSQTEGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVI 841 (1120)
Q Consensus 762 ~~vQilRS~~~WS~G~~~~E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~ 841 (1120)
..++++-+ | .....+++++|.+|+++|||++.||.++ .++..|.+++.+|+++++||+|+
T Consensus 27 n~v~~l~~------g-----~~~~~~l~~~I~~A~~~I~i~~~~~~~d---------~~g~~l~~aL~~aa~r~~GV~Vr 86 (458)
T 3hsi_A 27 EQIEFLGS------S-----AEFKTQIIELIRNAKKRIYVTALYWQKD---------EAGQEILDEIYRVKQENPHLDVK 86 (458)
T ss_dssp GGEEECCC------H-----HHHHHHHHHHHHTCSSEEEEEESCBCSS---------HHHHHHHHHHHHHHHHSTTCEEE
T ss_pred CeEEEEeC------H-----HHHHHHHHHHHHhcCCEEEEEEEEEecC---------cHHHHHHHHHHHHHhcCCCCEEE
Confidence 46777754 2 2589999999999999999999999875 35556666666677778899999
Q ss_pred EEecCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhC-CCccceeeEeeecc-ccccCCCCCcccccee
Q 001225 842 VVLPLIPGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLG-PKTRDYISFYGLRS-YGRLCDGGPVATSQVY 919 (1120)
Q Consensus 842 IVlP~~P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G-~~~~~Yi~f~~Lr~-~~~~~~~g~~vte~iy 919 (1120)
|+++...+..|.++.... .+..+++..|.++.| +++.. -+|++.. ..+. .| .
T Consensus 87 il~D~~~~~r~~~g~~~~---------------~~~~~~~~~L~~~g~nv~v~~--~~f~~p~~~~~~--~~-------r 140 (458)
T 3hsi_A 87 VLIDWHRAQRNLLGAEKS---------------ATNADWYCEQRQTYQLPDDPN--MFFGVPINTREV--FG-------V 140 (458)
T ss_dssp EEEETTGGGSCCC--------------------CCHHHHHHHHHHHHTCTTCCC--CEEEECSSSSGG--GC-------C
T ss_pred EEEECccccccccccccc---------------cccHHHHHHHHhhCCCceEee--eecCCccccccc--cC-------c
Confidence 999975432222221000 012356778877333 54440 0333211 1111 22 6
Q ss_pred eeeeEEEEeccEEEEcccccccCCCCCCC--CceeeEEEEccchhh
Q 001225 920 VHSKVMIIDDRAALIGSSNINDRSLLGSR--DSEIDVVIEDKEFLE 963 (1120)
Q Consensus 920 vHSKlmIVDD~~~iIGSANiN~RSm~G~~--DsEi~v~i~D~~~v~ 963 (1120)
.|.|++||||++++.| +||+++++-... ..--.++|.++...+
T Consensus 141 ~H~Ki~viD~~v~~~G-~Ni~d~y~~~~~~~~~drd~~i~g~~~~D 185 (458)
T 3hsi_A 141 LHVKGFVFDDTVLYSG-ASINNVYLHQFEKYRYDRYQKITHAELAD 185 (458)
T ss_dssp EECCEEEETTEEEEES-CCBSTTTTTCSSCCEECCEEEEECHHHHH
T ss_pred ceeeEEEECCCEEEEe-eecCHHHhcCCcccCcchhhhhcCchHHH
Confidence 9999999999997777 999999984210 112235566655433
No 16
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=98.99 E-value=1.1e-09 Score=107.76 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=75.9
Q ss_pred CCC-ceEEeeeecc--CCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccc
Q 001225 54 ELP-KATIVAVSRP--DSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGI 130 (1120)
Q Consensus 54 ~~p-~~~I~~ver~--~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~ 130 (1120)
||| ++.+++.+-. .+.. ....++|+|+++.+...|+|.|||+||..||.+|+. . .+
T Consensus 9 ~~~~~~~~vg~ev~Ip~~~~-~~~~~~Y~I~v~~~~~~~~V~RRYSdF~~Lh~~L~~-----~--------------~~- 67 (128)
T 2ett_A 9 ELEVHIPSVGPEAEGPRQSP-EKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKK-----L--------------YK- 67 (128)
T ss_dssp CEEEEEEEEESCCCCCSSCS-SCCCCEEEEEEEETTEEEEEEEEHHHHHHHHHHHHT-----T--------------SS-
T ss_pred eecccccEEeeEEEeccccC-CCCEEEEEEEEEECCcEEEEECCHHHHHHHHHHHHH-----H--------------CC-
Confidence 566 6777776652 1111 124689999999999999999999999999998874 0 01
Q ss_pred ccccccccCCCCCCCCCCCCCCCccccccCCCCccccccccccccc--ccHHHHHHHHHHHHHHHHHhhcccccchhccc
Q 001225 131 VDQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGK--QTVAERAKVAMQGYLNHFMGNIDIVNSREVCK 208 (1120)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~--~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~ 208 (1120)
+|+ ||. +.+++ ..+.++||++||.||+.|+..+.+. +..+.+
T Consensus 68 ------------------------------iP~---lP~--K~~~~~~~~~ie~Rr~~Le~yL~~ll~~p~~~-s~~l~~ 111 (128)
T 2ett_A 68 ------------------------------VPD---FPS--KRLPNWRTRGLEQRRQGLEAYIQGILYLNQEV-PKELLE 111 (128)
T ss_dssp ------------------------------CCC---CCC--SSCCCSSSSCHHHHHHHHHHHHHHHHHHSSSS-CHHHHH
T ss_pred ------------------------------CCC---CCC--CccCCCCHHHHHHHHHHHHHHHHHHHhCchhc-CHHHHH
Confidence 122 221 11222 2566667789999999999887766 689999
Q ss_pred cceecccc
Q 001225 209 FLEVSRLS 216 (1120)
Q Consensus 209 FLEvS~ls 216 (1120)
||+.+.++
T Consensus 112 FL~~~~~~ 119 (128)
T 2ett_A 112 FLRLRHFP 119 (128)
T ss_dssp HHTCTTCC
T ss_pred hcCCccCC
Confidence 99999875
No 17
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=98.98 E-value=1.9e-09 Score=106.24 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=70.8
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAV 136 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 136 (1120)
.|.|.++....++. ....++|+|+++.+.-+|+|.|||+||..||.+|+. ..+
T Consensus 24 ~V~Ip~~~~~~~~~-~k~y~vY~I~v~~~~~~w~V~RRYsdF~~L~~~L~~-------------------~~~------- 76 (129)
T 4az9_A 24 EVYIPSFRYEESDL-ERGYTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKK-------------------CIK------- 76 (129)
T ss_dssp EEEEEEEEEECCTT-SCCEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHTT-------------------TSC-------
T ss_pred EEEECcEEEEecCC-CCCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHH-------------------hCC-------
Confidence 56777665443322 123789999999999999999999999999997763 000
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhccccceecc
Q 001225 137 VQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSR 214 (1120)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~ 214 (1120)
.|. +|. +.+++. .+.++||++||.||+.||..+... +..+.+||++..
T Consensus 77 ------------------------~p~---lP~--K~~~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~~~ 126 (129)
T 4az9_A 77 ------------------------TPE---IPS--KHVRNWVPKVLEQRRQGLETYLQAVILENEEL-PKLFLDFLNVRH 126 (129)
T ss_dssp ------------------------CCC---CCC--SCCSCCCHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHTTC--
T ss_pred ------------------------CCC---CCc--ccccCCCHHHHHHHHHHHHHHHHHHHhCchhh-CHHHHHHCCCCC
Confidence 011 221 112332 677777789999999999887654 788999999865
Q ss_pred c
Q 001225 215 L 215 (1120)
Q Consensus 215 l 215 (1120)
+
T Consensus 127 ~ 127 (129)
T 4az9_A 127 L 127 (129)
T ss_dssp -
T ss_pred C
Confidence 4
No 18
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=98.89 E-value=2.8e-09 Score=108.03 Aligned_cols=108 Identities=11% Similarity=0.275 Sum_probs=80.5
Q ss_pred CCceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccc
Q 001225 55 LPKATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQV 134 (1120)
Q Consensus 55 ~p~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 134 (1120)
++.|.|.+++....+. ..+++|+|+++.+...|+|.|||+||..||.+|+. . ++..
T Consensus 7 ~~~v~I~~~~~~~~~~--~~~~~Y~I~v~~~~~~~~V~RRYsdF~~Lh~~L~~-----~-------~p~~---------- 62 (154)
T 1xte_A 7 CPSVSIPSSDEHREKK--KRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKK-----Q-------FPAM---------- 62 (154)
T ss_dssp CCEEEEEEEEEEEETT--EEEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHH-----H-------CGGG----------
T ss_pred CCEEEECCcEEEecCC--CCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHH-----H-------CCCC----------
Confidence 4589999988643221 24789999999999999999999999999998884 1 0000
Q ss_pred ccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccc-cc--cHHHHHHHHHHHHHHHHHhhcccccchhccccce
Q 001225 135 AVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLG-KQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLE 211 (1120)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~-~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLE 211 (1120)
.|+ ||. |..+| +. .+.++||.+||.||+.|+..+.+.++..+..||+
T Consensus 63 --------------------------~~p---lP~-K~~~g~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~ 112 (154)
T 1xte_A 63 --------------------------ALK---IPA-KRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQ 112 (154)
T ss_dssp --------------------------CCC---CCC-SCCSSCTTCHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHTT
T ss_pred --------------------------ccc---CCC-ccccCCCCCHHHHHHHHHHHHHHHHHHHcChhhccChHHHHHhC
Confidence 011 221 23344 22 6777777899999999999999999999999999
Q ss_pred ecccc
Q 001225 212 VSRLS 216 (1120)
Q Consensus 212 vS~ls 216 (1120)
.....
T Consensus 113 ~~~~~ 117 (154)
T 1xte_A 113 MDSPR 117 (154)
T ss_dssp TTCGG
T ss_pred CCCCc
Confidence 87664
No 19
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=98.83 E-value=1.5e-08 Score=103.10 Aligned_cols=125 Identities=16% Similarity=0.202 Sum_probs=85.8
Q ss_pred CCC-ceEEeeeeccCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccc
Q 001225 54 ELP-KATIVAVSRPDSSDISPMLLSYTIELQY-KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIV 131 (1120)
Q Consensus 54 ~~p-~~~I~~ver~~s~~~~~~~~~YtIeL~h-G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~ 131 (1120)
..| +|.|.++...+. ...|.|+++. +.-.|+|.|+|+||..||.+|+. . .|..
T Consensus 16 ~~~~~~sI~~~~~~~~------~y~Y~I~V~~~d~~~~~V~RRYsdF~~Lh~~L~~-----~--------------fP~e 70 (156)
T 2v6v_A 16 ELLVKASVESFGLEDE------KYWFLVCCELSNGKTRQLKRYYQDFYDLQVQLLD-----A--------------FPAE 70 (156)
T ss_dssp CCEEEEEEEEEEEETT------EEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHH-----H--------------CTTT
T ss_pred CcceEEEEeeEEEECC------EEEEEEEEEEcCCCEEEEEEEhHHHHHHHHHHHH-----H--------------cchh
Confidence 445 799988876543 3569999998 45699999999999999998884 1 1110
Q ss_pred cccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccc-cccHHHHHHHHHHHHHHHHHhhcc-cccchhcccc
Q 001225 132 DQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLG-KQTVAERAKVAMQGYLNHFMGNID-IVNSREVCKF 209 (1120)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~-~~~~~~rrr~~LE~YL~~LL~~~~-~~~~~~l~~F 209 (1120)
.. . .. .......++.+|. || ++.+. ...+.+.|+..||.||+.||..+. +..+..+..|
T Consensus 71 ~g-----~--------~~-~~~g~~~~~~lP~---LP--~K~~~~~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~F 131 (156)
T 2v6v_A 71 AG-----K--------LR-DAGGQWSKRIMPY---IP--GPVPYVTNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSL 131 (156)
T ss_dssp TT-----C--------CB-CTTCCBCCCCSCC---CC--CCCSSCCHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHT
T ss_pred hc-----c--------cc-cccccccccccCC---CC--CCcccCCHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHH
Confidence 00 0 00 0000012355666 55 23333 347788888999999999998664 7899999999
Q ss_pred ceecccccccccC
Q 001225 210 LEVSRLSFSEEYG 222 (1120)
Q Consensus 210 LEvS~lsf~~~~G 222 (1120)
|+.+...+.+++.
T Consensus 132 f~~~~~D~~~~~~ 144 (156)
T 2v6v_A 132 FVVLNNGFDREFE 144 (156)
T ss_dssp TSCCSSSSCEEEC
T ss_pred hCCCCcccccccc
Confidence 9999988776553
No 20
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=98.81 E-value=1.7e-08 Score=120.25 Aligned_cols=142 Identities=17% Similarity=0.218 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchhH
Q 001225 782 GSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAAT 861 (1120)
Q Consensus 782 ~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~~ 861 (1120)
.++..+++++|.+|+++|||+.-+|+.. +.+-+.|.+||. +|++++++|+|+|++...+.+.. . .
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~----d~~g~~i~~aL~----~aa~rGp~V~Vril~D~~g~~~~--~-----~ 129 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPN----GAFQDAIVAGLK----ESAAKGNKLKVRILVGAAPVYHM--N-----V 129 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCC----HHHHHHHHHHHH----HHHHTTCCEEEEEEEECCC--CC--C-----C
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCC----ChHHHHHHHHHH----HHHhCCCCcEEEEEEeCcccccc--c-----c
Confidence 4799999999999999999997442222 223344555554 45444334999999986432110 0 0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEeccEEEEccccc-c
Q 001225 862 VRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDDRAALIGSSNI-N 940 (1120)
Q Consensus 862 ~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANi-N 940 (1120)
. ..+++..|.+ .|+....++.+... .+... ..++ -..|.|++|||++++++||+|| +
T Consensus 130 ~--------------~~~~~~~L~~-~g~~~~~~~~~~~~-~~~~~--~~~~----~r~H~K~~ViD~~~a~~Gg~Nl~~ 187 (506)
T 1v0w_A 130 I--------------PSKYRDELTA-KLGKAAENITLNVA-SMTTS--KTAF----SWNHSKILVVDGQSALTGGINSWK 187 (506)
T ss_dssp H--------------HHHHHHHHHH-HHGGGGGGEEEEEE-EECSB--TTTT----BCBCCCEEEETTTEEEEESCCCCH
T ss_pred C--------------CHHHHHHHHh-cccceeecCccccc-ccccc--CCcc----ccceeeEEEECCcEEEeeccccCc
Confidence 0 1234566776 45554445544321 11100 0001 1689999999999999999999 6
Q ss_pred cCCCCC-CCCceeeEEEEccc
Q 001225 941 DRSLLG-SRDSEIDVVIEDKE 960 (1120)
Q Consensus 941 ~RSm~G-~~DsEi~v~i~D~~ 960 (1120)
++.+.. ..-.++.+.|+++.
T Consensus 188 d~y~~~~~~~~D~~v~i~G~~ 208 (506)
T 1v0w_A 188 DDYLDTTHPVSDVDLALTGPA 208 (506)
T ss_dssp HHHTSSSSCCBEEEEEEESHH
T ss_pred cccccCCCCceEEEEEEECHH
Confidence 665521 12378888888753
No 21
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=98.79 E-value=1.4e-08 Score=98.83 Aligned_cols=105 Identities=19% Similarity=0.328 Sum_probs=76.7
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeee--EEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQF--KWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQV 134 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~f--kWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 134 (1120)
.|.|.+.++-..+. ....|.|+++..+- .|+|.|||+||..||.+|+. . .|.
T Consensus 7 ~v~V~~~ek~~~~~---k~y~Y~I~v~~~~~~~~~~V~RRYseF~~Lh~~L~~-----~--------------fp~---- 60 (121)
T 2ar5_A 7 EVSVFTYHKKYNPD---KHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSI-----I--------------FPL---- 60 (121)
T ss_dssp EEEEEEEECCCSSS---SCCEEEEEEEETTCSSCEEEEEEHHHHHHHHHHHHH-----H--------------SCG----
T ss_pred EEEECcEEEEecCC---CcEEEEEEEEECCCceeEEEEEEHHHHHHHHHHHHH-----H--------------CCC----
Confidence 68899998643322 13459999999764 89999999999999998884 1 000
Q ss_pred ccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc---cHHHHHHHHHHHHHHHHHhh-cccccchhccccc
Q 001225 135 AVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ---TVAERAKVAMQGYLNHFMGN-IDIVNSREVCKFL 210 (1120)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~---~~~~rrr~~LE~YL~~LL~~-~~~~~~~~l~~FL 210 (1120)
..+|+ ||. |..+|+. .+.++|+.+||.||+.||.. +.+..+..+..||
T Consensus 61 ------------------------~~lP~---lP~-K~~~g~~~~~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff 112 (121)
T 2ar5_A 61 ------------------------WKLPG---FPN-RMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFF 112 (121)
T ss_dssp ------------------------GGSCC---CCC-CCCSSSSSTTHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHT
T ss_pred ------------------------CCCCC---CCC-CeecCccCcHHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHHc
Confidence 01233 332 2334442 57788889999999999987 4678999999999
Q ss_pred eeccc
Q 001225 211 EVSRL 215 (1120)
Q Consensus 211 EvS~l 215 (1120)
+.|..
T Consensus 113 ~~~~~ 117 (121)
T 2ar5_A 113 HGSHH 117 (121)
T ss_dssp SSSCC
T ss_pred CCccc
Confidence 98864
No 22
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=98.77 E-value=9.7e-09 Score=99.12 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=73.7
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAV 136 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 136 (1120)
++.|.+++......-....++|+|++. | .|+|.|||+||..||.+|+. . +
T Consensus 5 ~v~Ip~~~~~~~~~g~~~y~~Y~I~v~-~--~~~V~RRYsdF~~L~~~L~~-----~-------------------~--- 54 (115)
T 3lui_A 5 HFSIPETESRSGDSGGSAYVAYNIHVN-G--VLHCRVRYSQLLGLHEQLRK-----E-------------------Y--- 54 (115)
T ss_dssp CEEEEEEEEEC-----CCEEEEEEEET-T--EEEEEEEHHHHHHHHHHHHH-----H-------------------H---
T ss_pred EEEECCeEEecCCCCCCCEEEEEEEEC-C--eEEEEecHHHHHHHHHHHHH-----H-------------------c---
Confidence 577888776432110124789999986 3 79999999999999998874 1 0
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc-cHHHHHHHHHHHHHHHHHhhcccccchhccccceeccc
Q 001225 137 VQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ-TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEVSRL 215 (1120)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~-~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~l 215 (1120)
| ...+|+ ||. |..++.. .+.+.||++||.||+.|+..+.+.++..+..||+.+..
T Consensus 55 ------------~--------~~~~P~---lP~-K~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~ 110 (115)
T 3lui_A 55 ------------G--------ANVLPA---FPP-KKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQ 110 (115)
T ss_dssp ------------C--------STTSCC---CCC-CCSSCCCHHHHHHHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHHH
T ss_pred ------------C--------CCcCCC---CCC-CcccCCCHHHHHHHHHHHHHHHHHHHcChhhhcChHHHHHHCcCHH
Confidence 0 011233 332 2223222 56667778999999999999999999999999998876
Q ss_pred c
Q 001225 216 S 216 (1120)
Q Consensus 216 s 216 (1120)
+
T Consensus 111 ~ 111 (115)
T 3lui_A 111 E 111 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 23
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=98.76 E-value=3.4e-08 Score=97.85 Aligned_cols=97 Identities=13% Similarity=0.230 Sum_probs=68.9
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAV 136 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 136 (1120)
+|.|.+++....+. ...++|.|+++.+.-.|+|.|||+||..||.+|+. . ++..
T Consensus 7 ~VsIp~~~~~~~~~--~~~~~Y~I~v~~~~~~~~V~RRYsdF~~L~~~L~~-----~-------~p~~------------ 60 (134)
T 2v14_A 7 KISIPRYVLCGQGK--DAHFEFEVKITVLDETWTVFRRYSRFREMHKTLKL-----K-------YAEL------------ 60 (134)
T ss_dssp EEEEEEEEEESSTT--SCEEEEEEEEEETTEEEEEEECHHHHHHHHHHHHH-----H-------CGGG------------
T ss_pred EEEECcEEEEecCC--CCEEEEEEEEEECCeEEEEEeeHHHHHHHHHHHHH-----H-------CCCC------------
Confidence 78888887654432 24789999999999999999999999999998885 1 0000
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcc-cccchhc
Q 001225 137 VQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNID-IVNSREV 206 (1120)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~-~~~~~~l 206 (1120)
.+|+ ||. |..+|+. .+.++||.+||.||+.|+..+. +.++...
T Consensus 61 -----------------------~~p~---lP~-K~~~~~~~~~~ie~Rr~~Le~yL~~ll~~~~~l~~sp~~ 106 (134)
T 2v14_A 61 -----------------------AALE---FPP-KKLFGNKDERVIAERRSHLEKYLRDFFSVMLQSATSPLH 106 (134)
T ss_dssp -----------------------GGCC---CCC-CCSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHCTTSTTC
T ss_pred -----------------------CCCC---CcC-CccccCCCHHHHHHHHHHHHHHHHHHHhChHhhcCCHHH
Confidence 0122 332 2334443 6777777899999999998876 6666543
No 24
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=6.8e-08 Score=96.89 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=75.4
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYK-----QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIV 131 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG-----~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~ 131 (1120)
.+.|.+.+....+ ...+++|+|+++.+ .-.|+|.|||+||..||.+|+..
T Consensus 12 ~i~V~dp~~~~~g--~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~----------------------- 66 (146)
T 2csk_A 12 EIDIFNPQTVGVG--RARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD----------------------- 66 (146)
T ss_dssp EEEEEEEEEESSS--SSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-----------------------
T ss_pred EEEEcCceEecCC--CCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-----------------------
Confidence 5777777764433 12478999999865 45899999999999999977630
Q ss_pred cccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccc---------cccc--cHHHHHHHHHHHHHHHHHhhccc
Q 001225 132 DQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPV---------LGKQ--TVAERAKVAMQGYLNHFMGNIDI 200 (1120)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~---------l~~~--~~~~rrr~~LE~YL~~LL~~~~~ 200 (1120)
. ...+|+ ||. |.. .++. .+.++|+++||.||+.|+..+.+
T Consensus 67 -~------------------------~~~iP~---lP~-K~~~~~~~~~~~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l 117 (146)
T 2csk_A 67 -S------------------------KIVVPP---LPG-KALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLA 117 (146)
T ss_dssp -S------------------------SCCCCC---CSC-CCCCCSSTTCCCSSCCCHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred -c------------------------CCcCCC---CCC-CchhhccccccccCCCCHHHHHHHHHHHHHHHHHHHcChhh
Confidence 0 001122 221 111 1332 67777778999999999999999
Q ss_pred ccchhccccceecccc
Q 001225 201 VNSREVCKFLEVSRLS 216 (1120)
Q Consensus 201 ~~~~~l~~FLEvS~ls 216 (1120)
.++..+..||+...+.
T Consensus 118 ~~s~~l~~FL~~~~~~ 133 (146)
T 2csk_A 118 QNERCLHMFLQEEAID 133 (146)
T ss_dssp HHCHHHHHHTTCSSCC
T ss_pred ccCcHHHhhcCCCchh
Confidence 9999999999988664
No 25
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=98.68 E-value=4.1e-09 Score=102.90 Aligned_cols=106 Identities=16% Similarity=0.279 Sum_probs=72.9
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEe-----eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQY-----KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIV 131 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~h-----G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~ 131 (1120)
++.|.+.++...+. ...++|+|+++. +.-.|+|.|||+||..||.+|+. . .+..
T Consensus 5 ~v~V~~~~~~~~g~--~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~-----~--------------~~~~ 63 (128)
T 2i4k_A 5 TVGITDPEKIGDGM--NAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSE-----K--------------HSQN 63 (128)
T ss_dssp CCCBCCCCBCCCSS--CCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHH-----T--------------CSSS
T ss_pred EEEECCceEecCCC--cCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHH-----h--------------CCCC
Confidence 45666666654432 236799999986 46899999999999999998874 0 0000
Q ss_pred cccccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccc------------cccHHHHHHHHHHHHHHHHHhhcc
Q 001225 132 DQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLG------------KQTVAERAKVAMQGYLNHFMGNID 199 (1120)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~------------~~~~~~rrr~~LE~YL~~LL~~~~ 199 (1120)
...+|+ ||. |..++ ...+.++|+++||.||+.|+..+.
T Consensus 64 --------------------------~~~iP~---lP~-K~~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~ 113 (128)
T 2i4k_A 64 --------------------------GFIVPP---PPE-KSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPT 113 (128)
T ss_dssp --------------------------SCCCCS---SSS-CCSSSSSSCCCCSCCCSSTTHHHHHHHHHHHHHHHHHHCHH
T ss_pred --------------------------CcCcCC---CCC-CcccchhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHcCcc
Confidence 011222 111 11111 125677777899999999999999
Q ss_pred cccchhccccceec
Q 001225 200 IVNSREVCKFLEVS 213 (1120)
Q Consensus 200 ~~~~~~l~~FLEvS 213 (1120)
++++..+..||+.+
T Consensus 114 l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 114 MLQDPDVREFLEKE 127 (128)
T ss_dssp HHCSHHHHTTTTCC
T ss_pred cccChHHHHhhCCC
Confidence 99999999999865
No 26
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=98.66 E-value=3.1e-08 Score=98.77 Aligned_cols=108 Identities=18% Similarity=0.291 Sum_probs=74.7
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeee--EEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQF--KWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQV 134 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~f--kWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 134 (1120)
+|.|++++....+. ..++|.|+++...- .|.|.|||+||..||.+|+. . .|.
T Consensus 22 ~v~I~~~ek~~~~~---k~~~Y~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~-----~--------------fp~---- 75 (140)
T 2iwl_X 22 EVSVFTYHKKYNPD---KHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSI-----I--------------FPL---- 75 (140)
T ss_dssp EEEEEEEEECCSSS---SCEEEEEEEEETTCSSCEEEEECHHHHHHHHHHHHH-----H--------------SCG----
T ss_pred EEEECcEEEEecCC---CeEEEEEEEEECCCceeEEEEeEHHHHHHHHHHHHH-----H--------------CcC----
Confidence 78899988644322 24579999999764 89999999999999998885 1 000
Q ss_pred ccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc---cHHHHHHHHHHHHHHHHHhh-cccccchhccccc
Q 001225 135 AVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ---TVAERAKVAMQGYLNHFMGN-IDIVNSREVCKFL 210 (1120)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~---~~~~rrr~~LE~YL~~LL~~-~~~~~~~~l~~FL 210 (1120)
..+|+ ||. |..+++. .+.++|+.+||.||+.||.. +.+.++..+..||
T Consensus 76 ------------------------~~lP~---lP~-K~~~~~~~~~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl 127 (140)
T 2iwl_X 76 ------------------------WKLPG---FPN-RMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFF 127 (140)
T ss_dssp ------------------------GGSCC---CCC-----------CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHH
T ss_pred ------------------------ccCCC---CCC-CeecCccchHHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHh
Confidence 01233 332 2234432 45666778999999999985 5678999999999
Q ss_pred eecccccc
Q 001225 211 EVSRLSFS 218 (1120)
Q Consensus 211 EvS~lsf~ 218 (1120)
+.+.....
T Consensus 128 ~~~~~D~~ 135 (140)
T 2iwl_X 128 HPLLRDEK 135 (140)
T ss_dssp SCCTTTCC
T ss_pred CCCCCCcc
Confidence 98776543
No 27
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=98.63 E-value=8.6e-08 Score=97.98 Aligned_cols=112 Identities=14% Similarity=0.243 Sum_probs=76.7
Q ss_pred ceEEeeeeccCC-C-CCCCceeEEEEEEEe-----eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcc
Q 001225 57 KATIVAVSRPDS-S-DISPMLLSYTIELQY-----KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIG 129 (1120)
Q Consensus 57 ~~~I~~ver~~s-~-~~~~~~~~YtIeL~h-----G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~ 129 (1120)
.+.|.+.++... + .....+++|+|+++. +.-.|+|.|||+||..||.+|+...-+
T Consensus 37 ~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~------------------ 98 (162)
T 1ocs_A 37 EIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISM------------------ 98 (162)
T ss_dssp EEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHH------------------
T ss_pred EEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhcc------------------
Confidence 677777776521 2 222347899999986 446899999999999999988751100
Q ss_pred cccccccccCCCCCCCCCCCCCCCccccccCCCCccccccccccccc---ccHHHHHHHHHHHHHHHHHhhccccc-chh
Q 001225 130 IVDQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGK---QTVAERAKVAMQGYLNHFMGNIDIVN-SRE 205 (1120)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~---~~~~~rrr~~LE~YL~~LL~~~~~~~-~~~ 205 (1120)
..| ....+|+ ||. |..++. ..+.++||++||.||+.|+..+.+.+ +..
T Consensus 99 -~~~-----------------------p~~~iP~---lP~-K~~~~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~ 150 (162)
T 1ocs_A 99 -LNH-----------------------PKVMVPH---LPG-KILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKV 150 (162)
T ss_dssp -TTC-----------------------TTCCCCC---CTT-CCCSSCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHH
T ss_pred -ccC-----------------------CCccCCC---CCC-CcccccCCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHH
Confidence 001 0112344 442 233332 26777777899999999999999987 899
Q ss_pred ccccceecc
Q 001225 206 VCKFLEVSR 214 (1120)
Q Consensus 206 l~~FLEvS~ 214 (1120)
+..||+...
T Consensus 151 l~~FL~~~~ 159 (162)
T 1ocs_A 151 LVRFIEAEK 159 (162)
T ss_dssp HHHHHHCSS
T ss_pred HHHhCCCcc
Confidence 999999764
No 28
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=98.63 E-value=7.1e-08 Score=97.37 Aligned_cols=123 Identities=11% Similarity=0.171 Sum_probs=84.3
Q ss_pred CCceEEeeeeccCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccc
Q 001225 55 LPKATIVAVSRPDSSDISPMLLSYTIELQY-KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQ 133 (1120)
Q Consensus 55 ~p~~~I~~ver~~s~~~~~~~~~YtIeL~h-G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~ 133 (1120)
-+.+.|++.+.--... -.+++|.|+++. +.=.|+|+|+|++|..||.+|+. . .|...-
T Consensus 8 ~~~v~v~~~ek~~~~~--~~y~~Y~I~V~~~d~~~~~V~RRYseF~~Lh~~L~~-----~--------------FP~e~~ 66 (149)
T 2l73_A 8 GPRYPVSVQGAALVQI--KRLQTFAFSVRWSDGSDTFVRRSWDEFRQLKKTLKE-----T--------------FPVEAG 66 (149)
T ss_dssp CCCCEEEEEEEEEECC--SSSCEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHH-----H--------------CGGGGS
T ss_pred eeEEEEEeeeEeecCC--CceEEEEEEEEEeCCCEEEEEEehHHHHHHHHHHHH-----H--------------Cchhhc
Confidence 3678888888632111 125679999996 34569999999999999998884 1 110000
Q ss_pred cccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccc---cccHHHHHHHHHHHHHHHHHhhcc-cccchhcccc
Q 001225 134 VAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLG---KQTVAERAKVAMQGYLNHFMGNID-IVNSREVCKF 209 (1120)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~---~~~~~~rrr~~LE~YL~~LL~~~~-~~~~~~l~~F 209 (1120)
. ....++.+|+ ||. +..++ +..+.+.|+..||.||+.||..+. +..+..+..|
T Consensus 67 -----~--------------~~~~~r~lP~---lP~-k~~~~~~~~~~~~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~F 123 (149)
T 2l73_A 67 -----L--------------LRRSDRVLPK---LLD-APLLGRVGRTSRGLARLQLLETYSRRLLATAERVARSPTITGF 123 (149)
T ss_dssp -----S--------------SCSSCCSSCC---CCC-CSCCSSCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHSHHHHHH
T ss_pred -----c--------------cccccccccC---CCC-CeeeccccchHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHH
Confidence 0 0123456666 442 22233 236777778999999999998775 7899999999
Q ss_pred ceeccccccccc
Q 001225 210 LEVSRLSFSEEY 221 (1120)
Q Consensus 210 LEvS~lsf~~~~ 221 (1120)
|..+.-.+.+++
T Consensus 124 f~~~~~D~~~~~ 135 (149)
T 2l73_A 124 FAPQPLDLEPAL 135 (149)
T ss_dssp HSCCGGGGSSSC
T ss_pred hCCCccccCccC
Confidence 999998766544
No 29
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=98.62 E-value=1.3e-07 Score=94.11 Aligned_cols=107 Identities=13% Similarity=0.248 Sum_probs=75.1
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYK-----QFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIV 131 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG-----~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~ 131 (1120)
.+.|.+.+....+. ..+++|+|+++.. .-.|+|.|||+||..||.+|+. .
T Consensus 10 ~i~V~dp~~~~~g~--~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~-----~------------------ 64 (138)
T 3iq2_A 10 FITVDEPESHVTTI--ETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEE-----A------------------ 64 (138)
T ss_dssp EEEEEEEEEEECSS--CEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHH-----H------------------
T ss_pred EEEECCCEEecCCC--CCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHH-----H------------------
Confidence 46676666543322 2479999999863 3479999999999999998874 1
Q ss_pred cccccccCCCCCCCCCCCCCCCccccccCCCCccccccccccc----cc--ccHHHHHHHHHHHHHHHHHhhcccccchh
Q 001225 132 DQVAVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVL----GK--QTVAERAKVAMQGYLNHFMGNIDIVNSRE 205 (1120)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l----~~--~~~~~rrr~~LE~YL~~LL~~~~~~~~~~ 205 (1120)
+ | ...+|+ ||. |..+ ++ ..+.++||++||.||+.|+..+.++++..
T Consensus 65 -~---------------p--------~~~iP~---lP~-K~~~~~~~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~ 116 (138)
T 3iq2_A 65 -H---------------P--------TLIIPP---LPE-KFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNED 116 (138)
T ss_dssp -C---------------T--------TSCCCC---CCC-CC----CCGGGCHHHHHHHHHHHHHHHHHHHHSTTGGGCHH
T ss_pred -C---------------c--------CcccCC---CCc-chhhccccccCCHHHHHHHHHHHHHHHHHHHcCHhhhcChH
Confidence 0 0 011233 331 1111 12 26677777899999999999999999999
Q ss_pred ccccceecccc
Q 001225 206 VCKFLEVSRLS 216 (1120)
Q Consensus 206 l~~FLEvS~ls 216 (1120)
+..||+.....
T Consensus 117 ~~~FL~~~~~~ 127 (138)
T 3iq2_A 117 FKIFLTAQAWE 127 (138)
T ss_dssp HHHHHHTTCBC
T ss_pred HHhhhCCCCCC
Confidence 99999987764
No 30
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=98.55 E-value=5.4e-08 Score=94.07 Aligned_cols=96 Identities=16% Similarity=0.351 Sum_probs=68.5
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVAV 136 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 136 (1120)
.+.|.+++. . ...++|+|++ . .|+|.|||+||..||.+|+. . .|
T Consensus 7 ~v~I~~~~~--~----~~~~~Y~I~v---~-~~~V~RRYsdF~~L~~~L~~-----~--------------~~------- 50 (117)
T 1kmd_A 7 RIKVDDVKI--N----PKYVLYGVST---P-NKRLYKRYSEFWKLKTRLER-----D--------------VG------- 50 (117)
T ss_dssp CCEEEEEEE--C----SSCEEEEEEC---S-SCCEEECHHHHHHHHHHHHH-----H--------------HC-------
T ss_pred EEEECCcee--c----CCEEEEEEEE---c-eEEEEechHHHHHHHHHHHH-----H--------------cC-------
Confidence 678888877 1 1368999999 2 89999999999999998875 1 00
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCC-Cccccccccccc-------ccc--cHHHHHHHHHHHHHHHHHhhcc---cccc
Q 001225 137 VQDDDEPDDGAVPMHPSESVRNRYVP-SMAALSILRPVL-------GKQ--TVAERAKVAMQGYLNHFMGNID---IVNS 203 (1120)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~r~~P-s~~~lp~~r~~l-------~~~--~~~~rrr~~LE~YL~~LL~~~~---~~~~ 203 (1120)
..+| + ||. |..+ ++. .+.++||++||.||+.|+..+. ++++
T Consensus 51 ----------------------~~~P~~---lP~-K~~~~~~~~~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s 104 (117)
T 1kmd_A 51 ----------------------STIPYD---FPE-KPGVLDRRWQRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDT 104 (117)
T ss_dssp ----------------------SCCCCC---CCC-CCCSSCSTTCCCTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHS
T ss_pred ----------------------ccCCCC---CCC-CCEecccccccCCCCHHHHHHHHHHHHHHHHHHHhCcchhhhhcC
Confidence 0112 1 221 1111 222 6777777899999999998774 4789
Q ss_pred hhccccceecc
Q 001225 204 REVCKFLEVSR 214 (1120)
Q Consensus 204 ~~l~~FLEvS~ 214 (1120)
..+.+||+.+.
T Consensus 105 ~~l~~FL~~~~ 115 (117)
T 1kmd_A 105 KIAQDFLQLSK 115 (117)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHhcCCCC
Confidence 99999998764
No 31
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=98.53 E-value=4.3e-07 Score=84.20 Aligned_cols=102 Identities=17% Similarity=0.391 Sum_probs=75.1
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
.-.+||||.|++.... .....|++|||||+++.|.|.+++.+..+..++.++.. .+
T Consensus 2 ~v~~~G~L~K~~~~~~---------------~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~---------~v 57 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHS---------------FFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGY---------SV 57 (108)
T ss_dssp CEEEEEEEEEEEECSS---------------SSCEEEEEEEEEEETTEEEEESSTTCSSCSEEEECTTC---------EE
T ss_pred CccEEEEEEEcCCCCC---------------ccccCceeeEEEEeCCEEEEecCCCCCCCCEEEEecce---------EE
Confidence 3469999999853110 01157999999999999999998888888888876531 22
Q ss_pred eecccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 303 YLASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.............+.|.|.... |.+.|.|.|...+.+|+.+|..+.
T Consensus 58 ~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i 104 (108)
T 1u5d_A 58 RMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLL 104 (108)
T ss_dssp EECGGGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred EeCCccccccCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 2211111223456899999887 999999999999999999998764
No 32
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.52 E-value=7.3e-07 Score=84.14 Aligned_cols=95 Identities=17% Similarity=0.292 Sum_probs=72.7
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCee
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
--+||||.|+.. ....|++|||||+++.|.|.+++.+..+..+|.++... .+.
T Consensus 5 ~~~~G~L~K~g~-------------------~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~--------~~~ 57 (113)
T 1pls_A 5 RIREGYLVKKGS-------------------VFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGST--------LTS 57 (113)
T ss_dssp CSEEEEEEEESS-------------------SSSCCEEEEEEEETTEEEEESSTTCSSCSEEEESSSCC--------EES
T ss_pred CcEEEEEEEeCC-------------------CCCCceEEEEEEECCEEEEEeCCCCCCcceEEEcCCCE--------EEE
Confidence 358999998731 01579999999999999999988888888888776421 110
Q ss_pred ecccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 304 LASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.. .+.....+.|.|.... |.+.|.|.|...+.+|+.+|+.+.
T Consensus 58 ~~---~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~ 100 (113)
T 1pls_A 58 PC---QDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100 (113)
T ss_dssp SC---CSSCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ec---CCCCCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 00 1223356899998875 899999999999999999998875
No 33
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=6.5e-07 Score=84.35 Aligned_cols=97 Identities=23% Similarity=0.374 Sum_probs=75.2
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPG 301 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~ 301 (1120)
+.--+||||.|+.. ....|++|||||+++.|.|.+++.+..+..+|.++.. ..
T Consensus 6 ~~~~~~G~L~K~~~-------------------~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~--------~~ 58 (115)
T 2dn6_A 6 SGVLKQGYMMKKGH-------------------RRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDEN--------CC 58 (115)
T ss_dssp CSCSEEEEEEEECT-------------------TSSCEEEEEEEECSSCEEEESSTTCSSEEEEECCCTT--------CE
T ss_pred CCceEEEEEEecCC-------------------CCCCcEEeEEEEECCEEEEeCCCCCcccCcEEEecCc--------EE
Confidence 34569999998731 0157999999999999999998888888888877631 12
Q ss_pred eeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 302 VYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
|... .+.....+.|.|....|.+.|.|.+...+.+|+.+|..+.
T Consensus 59 v~~~---~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~ai~~~~ 102 (115)
T 2dn6_A 59 VESL---PDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTI 102 (115)
T ss_dssp EEEE---CCCTTCCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEC---CCCCCCeeEEEEEeCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 2221 1223446899999999999999999999999999998865
No 34
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.3e-06 Score=82.44 Aligned_cols=97 Identities=20% Similarity=0.345 Sum_probs=72.5
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCee
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
--+||||.|+... ....|++|||||+++.|.|.+++.+..+..+|.++.. .+.
T Consensus 11 ~~~~G~L~K~~~~------------------~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~---------~v~ 63 (117)
T 2d9y_A 11 VTKAGWLFKQASS------------------GVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSF---------RVA 63 (117)
T ss_dssp CCEEEEEEEECTT------------------SSSCEEEEEEEEETTEEEEESSTTCCSCCEEEECSSC---------EEE
T ss_pred eeEEEEEEEeCCC------------------CCCCceEEEEEECCCEEEEECCCCCCCcCCEEEeCCe---------EEE
Confidence 4599999987310 0157999999999999999998888888888876631 121
Q ss_pred ecccccCCCCcceeEEEEe-CceEEEEEecChhhHHHHHHHHHhhc
Q 001225 304 LASQVKGSNPLRYAFQVSC-GNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~-~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
... ..+.....+.|.|.. ..|.+.|.|.+...+.+|+.+|..+.
T Consensus 64 ~~~-~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~ 108 (117)
T 2d9y_A 64 AVQ-PSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108 (117)
T ss_dssp ECC-TTTTCCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred EcC-ccccCCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 110 011234568999964 56999999999999999999999976
No 35
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=98.44 E-value=5.3e-07 Score=82.52 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=65.1
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCc--eeEEEEEecCCCCCCCCCCCee
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTR--VLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~--~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
|+|||.|+.. -...|++|||||+++.|.|.+++.+.. +..++-+.. ..+.
T Consensus 3 k~G~L~K~g~-------------------~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~~~~~i~l~~---------~~~~ 54 (94)
T 2rsg_A 3 RCGVLSKWTN-------------------YIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSK---------AVIT 54 (94)
T ss_dssp EEEEEEEESS-------------------STTCEEEEEEEEETTEEEEESSTTGGGTCCSEEEETTT---------CEEE
T ss_pred EEEEEEEeCC-------------------CCCCceEEEEEEECCEEEEEEecccccccceeeEecce---------eeee
Confidence 8999998731 015699999999999999998765543 333332221 1111
Q ss_pred ecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhh
Q 001225 304 LASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDA 347 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~ 347 (1120)
......+.|.|..++|.+.|.|.|...+.+|+.+|+++
T Consensus 55 ------~~~~~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 55 ------PHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp ------ECSSCSSEEEEEETTEEEEEECCSSCCTHHHHHHHHHH
T ss_pred ------cCcccceeEEEEeCCeEEEEECCCHHHHHHHHHHHHhh
Confidence 12234678999999999999999999999999999875
No 36
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=98.44 E-value=9.5e-07 Score=84.36 Aligned_cols=97 Identities=18% Similarity=0.306 Sum_probs=73.1
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeee
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYL 304 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~ 304 (1120)
.+||||.|+... . ...|++|||||+++.|.|++++.+.++..+|.+.. ..|..
T Consensus 12 ~~~G~L~K~~~~--------------~----~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~---------~~v~~ 64 (123)
T 1upq_A 12 HIRGWLHKQDSS--------------G----LRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPS---------YNIRP 64 (123)
T ss_dssp EEEEEEEEECSS--------------S----SCCEEEEEEEEETTEEEEESSTTCCSCCEEEEGGG---------CEEEE
T ss_pred eEEEEEEeeCCC--------------C----CCCceeEEEEEeCCEEEEECCCCCcccceEEECCC---------CEEEE
Confidence 599999987310 0 14699999999999999999888888888876542 12222
Q ss_pred cccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhcC
Q 001225 305 ASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 305 ~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~~ 349 (1120)
.... ......+.|.|...+ |.+.|.|.|...+.+|+.+|..+..
T Consensus 65 ~~~~-~~~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 65 DGPG-APRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp CCSS-CTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCCC-ccCCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 1110 122357889998766 9999999999999999999999874
No 37
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=98.43 E-value=1.5e-06 Score=86.41 Aligned_cols=106 Identities=13% Similarity=0.273 Sum_probs=77.4
Q ss_pred ccCCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCC
Q 001225 220 EYGPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEG 299 (1120)
Q Consensus 220 ~~G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~ 299 (1120)
+++.--|+|||.|+.... +.....|++|||||+++.|.|++++.+..+..+|.++..
T Consensus 13 ~~~~~~~~G~L~K~g~~~---------------~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~g~i~L~~~-------- 69 (148)
T 1u5f_A 13 DLPFVIKAGYLEKRRKDH---------------SFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGY-------- 69 (148)
T ss_dssp GCSSEEEEEEEEEECCCS---------------SCSSCSEEEEEEEEETTEEEEESSTTCSSCSEEEECTTC--------
T ss_pred hCCCccEEEEEEEeCCCC---------------CCcCCCceeEEEEEECCEEEEEcCCCCcccceEEEcCCc--------
Confidence 345567999999874210 001157999999999999999999888888888876531
Q ss_pred CCeeecccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhcC
Q 001225 300 PGVYLASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~~ 349 (1120)
.+.............+.|.|.... |.+.|.|.+...+.+|+.+|..+..
T Consensus 70 -~v~~~~~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~ 119 (148)
T 1u5f_A 70 -DVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQ 119 (148)
T ss_dssp -EEEECTTSCSSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred -EEEECCCcccCCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 122111011123346899999876 9999999999999999999999863
No 38
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1e-06 Score=83.93 Aligned_cols=98 Identities=20% Similarity=0.367 Sum_probs=73.1
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
.--+||||.|+... ....|++|||||+++.|.|++++.+..+..+|-++.. .+
T Consensus 21 ~~~~~G~L~K~~~~------------------~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~---------~v 73 (122)
T 2yry_A 21 PVTKAGWLFKQASS------------------GVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSF---------RV 73 (122)
T ss_dssp CEEEEEEEEEECCS------------------SSCCEEEEEEEEETTEEEEESSTTCCSCCEEEESTTC---------CC
T ss_pred CccEEEEEEEECCC------------------CCCCcEEEEEEEeCCEEEEECCCCCCCcccEEEcCCC---------EE
Confidence 34699999987310 0157999999999999999998888888888876631 12
Q ss_pred eecccccCCCCcceeEEEEe-CceEEEEEecChhhHHHHHHHHHhhc
Q 001225 303 YLASQVKGSNPLRYAFQVSC-GNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~-~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.... ..+.....+.|.|.. ..|.+.|.|.+...+.+|+.+|..+.
T Consensus 74 ~~~~-~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 119 (122)
T 2yry_A 74 AAVQ-PSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119 (122)
T ss_dssp EECC-TTCSCSSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEcC-ccccCCcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 1110 011234568999964 56999999999999999999999875
No 39
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.41 E-value=8.7e-07 Score=86.80 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=74.9
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEe----CCCCCceeEEEEEecCCCCCCCCCC
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLE----DPYNTRVLDIIVFELLPTTNGKEGP 300 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~----d~~~~~~~~v~l~D~~~~~~~~~~~ 300 (1120)
-++|||.|+.+. . ...|++|||||++..|.|++ +..+..++.+|.++. .
T Consensus 9 ~~~G~L~KqG~~--------------~----~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~G~I~L~g---------~ 61 (126)
T 1wi1_A 9 KHSGYLWAIGKN--------------V----WKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDG---------Y 61 (126)
T ss_dssp EEEEEEEEECSS--------------S----CCSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSS---------C
T ss_pred ceeEEEEEeCCC--------------c----ccccceEEEEEeCCEEEEEEcccccccCCCCceEEECCC---------c
Confidence 489999987310 0 15799999999999999998 788888999998873 2
Q ss_pred CeeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 301 GVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.|.......+..+.++.|.|...+++..|-|.|...+..|+.+|..+.
T Consensus 62 tV~~~~~~~~~~~~k~~F~~v~~~~ty~~~Adseee~~~WikAi~~A~ 109 (126)
T 1wi1_A 62 TVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRAT 109 (126)
T ss_dssp EEEECCCCSSCCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccccCceEEEEecCCceEEEEcCCHHHHHHHHHHHHHHh
Confidence 333211111223467899988888899999999999999999999986
No 40
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=8.5e-07 Score=84.35 Aligned_cols=91 Identities=15% Similarity=0.315 Sum_probs=68.5
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCee
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
--+||||.|+.. + ....|++|||||+++.|.|.+++.+..+..++|.+. .+.
T Consensus 10 ~~~~G~L~K~~~----~--------------~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~i~l~~~----------~v~ 61 (114)
T 2da0_A 10 SEKKGYLLKKSD----G--------------IRKVWQRRKCSVKNGILTISHATSNRQPAKLNLLTC----------QVK 61 (114)
T ss_dssp SCEEEEEEEECS----S--------------SCCCEEEEEEEEETTEEEECCSSCCSCCEEEETTTS----------EEE
T ss_pred ccEEEEEEEeCC----C--------------CCCCceeEEEEEeCCEEEEEcCCCCCCCCEEEeeee----------EEE
Confidence 359999998741 0 015799999999999999999876655555544331 122
Q ss_pred ecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 304 LASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
. ....++.|.|....|.+.|.|.|...+.+|+.+|..+.
T Consensus 62 ~------~~~~~~~F~I~~~~r~~~l~a~s~~e~~~Wi~al~~~~ 100 (114)
T 2da0_A 62 P------NAEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSK 100 (114)
T ss_dssp E------CSSSSSCEEEEETTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred E------CCCCCCEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 1 11245789999999999999999999999999998765
No 41
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.40 E-value=1.1e-06 Score=83.25 Aligned_cols=92 Identities=15% Similarity=0.251 Sum_probs=71.1
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
.-.+||||.|+... ....|++|||||+++.|.|++++.+..+..+|-++.. ..|
T Consensus 7 ~~~~~G~L~K~~~~------------------~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~--------~~v 60 (115)
T 2cod_A 7 GKVKSGWLDKLSPQ------------------GKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAI--------STV 60 (115)
T ss_dssp CCCEEEEEEECCSS------------------SSSCCEEEEEEECSSEEEEEESSCCSSCCCEEETTTE--------EEE
T ss_pred CccEEEEEEEcCCC------------------CCCCCceEEEEEECCEEEEEcCCCCcccCCEEECCcc--------eEE
Confidence 34699999986310 0146999999999999999998888777777766421 112
Q ss_pred eecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 303 YLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
... + .+.|.|....|.+.|.|.+...+.+|+.+|..+.
T Consensus 61 ~~~-------~-~~~F~i~~~~r~~~l~a~s~~e~~~Wi~~l~~~~ 98 (115)
T 2cod_A 61 RVQ-------G-DNKFEVVTTQRTFVFRVEKEEERNDWISILLNAL 98 (115)
T ss_dssp EEE-------T-TTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred EeC-------C-CCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 111 1 5789999999999999999999999999999865
No 42
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=98.40 E-value=5.5e-07 Score=87.70 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=70.1
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQY-KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVA 135 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~h-G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 135 (1120)
+|.|+++... + ...|.|+++. +.=.|.|.|+|++|..||.+||+ . +
T Consensus 27 ~~~v~~~~k~-~------~~~Yvi~V~~sd~~~~~~~rry~eF~~LH~qLkk-----~-------------------F-- 73 (127)
T 2wwe_A 27 RATILGFSKK-S------SNLYLIQVTHSNNETSLTEKSFEQFSKLHSQLQK-----Q-------------------F-- 73 (127)
T ss_dssp EEEEEEEETT-E------EEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHH-----H-------------------T--
T ss_pred EEEEEEEEec-c------cEEEEEEEEEeCCCeEEEEEEHHHHHHHHHHHHH-----h-------------------C--
Confidence 7899888654 2 3579999999 46799999999999999999985 1 1
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc-cHHHHHHHHHHHHHHHHHh-hcccccchhccccce
Q 001225 136 VVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ-TVAERAKVAMQGYLNHFMG-NIDIVNSREVCKFLE 211 (1120)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~-~~~~rrr~~LE~YL~~LL~-~~~~~~~~~l~~FLE 211 (1120)
| .+.+|+ ||- +..++.. .-.+ |+++||.||+.|+. ...+.++..+.+||.
T Consensus 74 -------------p--------~~~LP~---fP~-K~ll~~t~~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~ 125 (127)
T 2wwe_A 74 -------------A--------SLTLPE---FPH-WWHLPFTNSDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFL 125 (127)
T ss_dssp -------------T--------TSCCCC---CCC-TTSHHHHHCHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHH
T ss_pred -------------c--------cccCCC---CCC-ccccCcCHHHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhC
Confidence 1 122344 332 2334444 2233 55799999999998 477899999999986
No 43
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.39 E-value=1.6e-06 Score=81.78 Aligned_cols=99 Identities=15% Similarity=0.289 Sum_probs=73.8
Q ss_pred cCCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCC
Q 001225 221 YGPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGP 300 (1120)
Q Consensus 221 ~G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~ 300 (1120)
++.--+||||.|+.. ....|++|||||+++.|.|.+++.+..+..+|.++..
T Consensus 5 ~~~~~~~G~L~K~g~-------------------~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~--------- 56 (118)
T 1v89_A 5 SSGPIKMGWLKKQRS-------------------IVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGC--------- 56 (118)
T ss_dssp SSCEEEEEEEEEECS-------------------SSSCEEEEEEEEETTEEEEESSSSCCSCSEEECSTTE---------
T ss_pred CCCCcEEEEEEecCC-------------------CCCCccEEEEEEECCEEEEEeCCCCCCceEEEECCCC---------
Confidence 445679999998731 0146999999999999999998888888887765421
Q ss_pred CeeecccccCCCCcceeEEEEe--------CceEEEEEecChhhHHHHHHHHHhhc
Q 001225 301 GVYLASQVKGSNPLRYAFQVSC--------GNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~i~~--------~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+..... .......+.|.|.. ..|.+.|.|.+...+.+|+.+|..+.
T Consensus 57 ~v~~~~~-~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~ 111 (118)
T 1v89_A 57 TIKEIAT-NPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111 (118)
T ss_dssp EEEEECC-CSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEcCc-CcccCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 1110000 11223478999987 78999999999999999999999876
No 44
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.39 E-value=2.3e-06 Score=80.83 Aligned_cols=104 Identities=15% Similarity=0.222 Sum_probs=74.2
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEe--cCeEEEEeCCCCCceeEEEEEecCCCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLK--PGFLVLLEDPYNTRVLDIIVFELLPTTNGKEG 299 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvk--ds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~ 299 (1120)
+.--+||||.|+.. . ...|++|||||+ +..|.|.+++.+..+..+|.++..........
T Consensus 6 ~~~~~~G~L~K~g~--------------~-----~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~ 66 (117)
T 1v5u_A 6 SGRSYEGILYKKGA--------------F-----MKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTP 66 (117)
T ss_dssp CSSSEEEEEEECCC--------------S-----SSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCC
T ss_pred CCccEEEEEEecCC--------------C-----CCCceeeEEEEECCCCEEEEeecCCCCccceEEEccCcEEEeecCc
Confidence 44569999998731 0 157999999999 88999999888888887776653210000000
Q ss_pred CCeeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhcC
Q 001225 300 PGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~~ 349 (1120)
..+. .......+.|.|....|.+.|.|.+...+.+|+.+|..+..
T Consensus 67 ---~~~~--~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~ 111 (117)
T 1v5u_A 67 ---TIGA--PKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLS 111 (117)
T ss_dssp ---CTTS--CSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred ---cccc--cccCCCCeEEEEECCCceEEEECCCHHHHHHHHHHHHHHhc
Confidence 0000 01123458899999999999999999999999999998763
No 45
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=98.38 E-value=1.6e-06 Score=83.30 Aligned_cols=98 Identities=22% Similarity=0.394 Sum_probs=73.3
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
.-.+||||.|+... ....|++|||||+++.|.|++++.+..+..+|.++. ..+
T Consensus 20 ~~~~~G~L~K~~~~------------------~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~---------~~v 72 (128)
T 2dkp_A 20 PVVRRGWLYKQDST------------------GMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPS---------FQI 72 (128)
T ss_dssp CCCEEEEEEEECCS------------------SSCCEEEEEEEEETTEEEEESSTTCCSEEEEECGGG---------SEE
T ss_pred CcEEEEEEEEeCCC------------------CCCCceeEEEEEeCCEEEEECCCCCcccceEEEcCc---------eEE
Confidence 44699999887310 015799999999999999999888888888776642 122
Q ss_pred eecccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 303 YLASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..... .......+.|.|.... |.+.|.|.+...+.+|+.+|..+.
T Consensus 73 ~~~~~-~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 118 (128)
T 2dkp_A 73 ALLTS-EDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAA 118 (128)
T ss_dssp EECCG-GGCCSSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEcCC-cccCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 22111 1122456899998874 999999999999999999999876
No 46
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=1.8e-06 Score=82.86 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=73.3
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecC--eEEEEeCCCCCceeEEEEEecCCCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPG--FLVLLEDPYNTRVLDIIVFELLPTTNGKEG 299 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds--~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~ 299 (1120)
.+..+||||.|+... + -...|++|||||+++ .|.|.+++.+..+..+|-+...
T Consensus 6 ~~~~~~G~L~K~g~~---~--------------~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~-------- 60 (119)
T 2dhk_A 6 SGKKLCGYLSKFGGK---G--------------PIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSA-------- 60 (119)
T ss_dssp SCCCCEEEEEECSCS---S--------------SSCCCEEEEEEEETTTTEEEEESSTTCCSCSEEEEGGGC--------
T ss_pred CCCcEEEEEEecCCC---C--------------CCCCceeEEEEEECCccEEEEECCCCCcccccEEECCCC--------
Confidence 456799999987310 0 015799999999999 9999998888888888766531
Q ss_pred CCeeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 300 PGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+.. ......+.|.|....|.+.|.|.+...+.+|+.+|+.+.
T Consensus 61 -~~~~-----~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~ 103 (119)
T 2dhk_A 61 -VFDC-----KADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKR 103 (119)
T ss_dssp -EEEE-----CTTGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred -EEEe-----cCCCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 1111 111245789999999999999999999999999998865
No 47
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=98.35 E-value=2.8e-06 Score=81.64 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=74.6
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
.--+||||.|+.. -...|++|||||+++.|.|++++.+..+..+|-++.- ..+
T Consensus 17 ~~~~~G~L~K~g~-------------------~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~--------~~v 69 (126)
T 1fao_A 17 LGTKEGYLTKQGG-------------------LVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTEC--------SAV 69 (126)
T ss_dssp TTCEEEEEEEECS-------------------SSCCEEEEEEEEETTEEEEESSTTCSSCSEEEEGGGC--------CEE
T ss_pred CccEEEEEEEcCC-------------------CCCCcccEEEEEECCEEEEeCCCCCCCceeEEEccce--------EEE
Confidence 3469999998731 0146999999999999999998888888888877631 112
Q ss_pred eecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 303 YLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
... +.....+.|.|.+..|.+.|.|.+...+.+|+.+|..+.
T Consensus 70 ~~~----~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i 111 (126)
T 1fao_A 70 QFD----YSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKL 111 (126)
T ss_dssp EEE----CSSSSSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred Eec----ccCCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 221 123456899999999999999999999999999999875
No 48
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.35 E-value=1.8e-06 Score=84.51 Aligned_cols=97 Identities=18% Similarity=0.352 Sum_probs=70.7
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEe---cCeEEEEeC----CCCCceeEEEEEecCCCCCCCC
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLK---PGFLVLLED----PYNTRVLDIIVFELLPTTNGKE 298 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvk---ds~l~y~~d----~~~~~~~~v~l~D~~~~~~~~~ 298 (1120)
++|||.|+.... ...|++|||||+ +..|.|+++ +.+.++..+|.+...
T Consensus 17 ~~G~L~K~g~~~------------------~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~------- 71 (126)
T 1v5p_A 17 ICGFLDIEDNEN------------------SGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYI------- 71 (126)
T ss_dssp EECCEEEECTTC------------------SSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTC-------
T ss_pred eEEEEEEeCCCC------------------CCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCc-------
Confidence 799999873100 147999999999 667788888 456778888866531
Q ss_pred CCCeeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhcC
Q 001225 299 GPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~~ 349 (1120)
..|..+.. +.....++.|.|..+.|+..|.|.|...+.+|+.+|..+..
T Consensus 72 -~~V~~~~~-~~~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 72 -SKVSIATP-KQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp -CEEEECCT-TTSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred -cEEecCCc-ccCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 12322210 11223468899999999999999999999999999998764
No 49
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=98.34 E-value=2.8e-06 Score=81.26 Aligned_cols=93 Identities=16% Similarity=0.269 Sum_probs=68.8
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCee
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
--+||||.|+.+ . ...|++|||||+++.|.|.+++.+..+..+|.++.- .+.
T Consensus 5 ~~~~G~L~K~g~--------------~-----~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~---------~v~ 56 (127)
T 1fgy_A 5 PDREGWLLKLGG--------------R-----VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENL---------SIR 56 (127)
T ss_dssp CSEEEEEEEECS--------------S-----SCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTC---------EEE
T ss_pred CceEeEEEEECC--------------C-----CCCeEEEEEEEECCEEEEeCCCCCCCcceEEECCce---------EEE
Confidence 359999998731 0 156999999999999999998888888888876631 111
Q ss_pred ecccccCCCCcceeEEEEeC----------------------ceEEEEEecChhhHHHHHHHHHhhc
Q 001225 304 LASQVKGSNPLRYAFQVSCG----------------------NRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~~----------------------~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.. ......+.|.|.+. .|.+.|.|.|...+.+|+.+|..+.
T Consensus 57 ~~----~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i 119 (127)
T 1fgy_A 57 EV----LDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 119 (127)
T ss_dssp EE----CCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHH
T ss_pred Ec----cCCCCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 11 11233456666543 4889999999999999999999875
No 50
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.34 E-value=4.4e-06 Score=78.36 Aligned_cols=97 Identities=16% Similarity=0.290 Sum_probs=72.3
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPG 301 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~ 301 (1120)
+.-.+||||.|+.. . ...|++|||||+++.|.|.+++.+..+..+|.+... .
T Consensus 6 ~~~~~~G~L~K~~~--------------~-----~~~Wk~RwfvL~~~~L~yyk~~~~~~~~~~i~L~~~---------~ 57 (109)
T 1wgq_A 6 SGSTMSGYLYRSKG--------------S-----KKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGF---------T 57 (109)
T ss_dssp CSCSCEEEEEEESS--------------T-----TSCCEEEEEEEETTEEEEESCTTCSSCSEEEECSSE---------E
T ss_pred CCCeEEEEEEeCCC--------------C-----CCCceeEEEEEeCCEEEEECCCCcCccCceEECCCC---------E
Confidence 44568999998721 0 157999999999999999999888888887766531 1
Q ss_pred eeecccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhcC
Q 001225 302 VYLASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~~ 349 (1120)
+... .+.....+.|.|.... |.+.|.|.|...+..|+.+|..+..
T Consensus 58 ~~~~---~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 58 VTLV---KDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp EEEC---CCSSCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred EEEC---CCCCCCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 1111 1111235899998664 6799999999999999999999763
No 51
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=98.31 E-value=1.7e-06 Score=82.71 Aligned_cols=99 Identities=14% Similarity=0.281 Sum_probs=74.5
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPG 301 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~ 301 (1120)
+.-.+||||.|+.. ....|++|||||+++.|.|++++.+..+..+|-++.. ..
T Consensus 12 ~~~~~~G~L~K~g~-------------------~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~l~~~--------~~ 64 (125)
T 1eaz_A 12 SAVIKAGYCVKQGA-------------------VMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEV--------HK 64 (125)
T ss_dssp CCCSEEEEEEEECT-------------------TTCCEEEEEEEECSSEEEEESSTTCSSCSEEEEGGGC--------CE
T ss_pred CCccEEEEEEEeCC-------------------CCCCcceEEEEEeCCEEEEEcCCCCCcceeEEEcccc--------eE
Confidence 44579999998721 0146999999999999999998888888888877642 11
Q ss_pred eeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 302 VYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+..... .+.....+.|.|....|.+.|.|.+...+.+|+.+|..+.
T Consensus 65 v~~~~~-~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~W~~al~~~i 110 (125)
T 1eaz_A 65 VQECKQ-SDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAI 110 (125)
T ss_dssp EEECTT-HHHHTCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred Eeeccc-cccCCcCCEEEEEeCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 211100 0111246889999999999999999999999999999875
No 52
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.30 E-value=2.2e-06 Score=86.46 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=71.5
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPG 301 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~ 301 (1120)
.+-.|||||.|+.. . . ..|++|||||++..|.|++++.+..+...|-+.. ..
T Consensus 16 ~pv~keG~L~Kkg~--------------~----~-k~WkrRWFvLk~~~L~Yyk~~~d~~~~g~I~L~~---------~~ 67 (149)
T 1x1f_A 16 LPLYFEGFLLIKRS--------------G----Y-REYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVD---------LT 67 (149)
T ss_dssp SCEEEEEEEEEECT--------------T----C-CSCEEEEEEEETTEEEEESCSSCSSCSEECCCSS---------CC
T ss_pred CCccEEEEEEEeCC--------------C----C-CCceeEEEEEcCCEEEEEeCCCccccCcEEECCC---------ce
Confidence 34679999998731 0 1 5799999999999999999988777766554332 11
Q ss_pred eeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 302 VYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+...... .. ...+.|.|.+..|++.|.|.|...+.+|+.+|....
T Consensus 68 ~~~~~~~-~~-~~~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~ 112 (149)
T 1x1f_A 68 CLTEQNS-TE-KNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVT 112 (149)
T ss_dssp EEEECCC-TT-SCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEeeccC-CC-CcCcEEEEEcCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 1110100 11 135789999999999999999999999999998875
No 53
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.28 E-value=3.8e-06 Score=82.63 Aligned_cols=94 Identities=18% Similarity=0.392 Sum_probs=70.3
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPG 301 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~ 301 (1120)
+.--|||||.|+. . ...|++||||||+..|.|++++.+..+..+|.++.. .
T Consensus 6 ~~v~k~GwL~K~g--~------------------~k~WkrRWfVLk~~~L~yyk~~~~~~p~G~I~L~~~---------~ 56 (130)
T 1v88_A 6 SGIVMADWLKIRG--T------------------LKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNAC---------E 56 (130)
T ss_dssp SSCCEEEEEEECC--S------------------SSSCEEEEEEEETTEEEEESCSSSCCCCEEEECSSC---------E
T ss_pred CceEEEeEEEEeC--C------------------CCCceEEEEEEECCEEEEECCCCCCCceEEEEcCCC---------E
Confidence 3345999998752 0 147999999999999999999998899999887631 1
Q ss_pred eeecccccCCCCcceeEEEEeCc------------------------eEEEEEecChhhHHHHHHHHHhhc
Q 001225 302 VYLASQVKGSNPLRYAFQVSCGN------------------------RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~i~~~~------------------------r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+. . .......+.|.|.+.. |.+.|.|.|..++.+|+.+|+.+.
T Consensus 57 v~--~--~~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~ 123 (130)
T 1v88_A 57 II--E--RPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELAL 123 (130)
T ss_dssp EC--C--CCTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHH
T ss_pred EE--E--CCCCCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 11 0 0111234788887542 348899999999999999999876
No 54
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=98.28 E-value=5.3e-06 Score=80.77 Aligned_cols=96 Identities=19% Similarity=0.318 Sum_probs=72.9
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeee
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYL 304 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~ 304 (1120)
-++|+|.|+.++ .....|++|||||++.+|.|++|..+..++.+|..|... +
T Consensus 13 irkGWL~k~~~g-----------------~~k~~wk~rWFVLt~~~L~yyKd~~eke~~G~IpL~~~~-----------v 64 (125)
T 1dyn_A 13 IRKGWLTINNIG-----------------IMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLK-----------L 64 (125)
T ss_dssp EEEEEEEESCCC-----------------GGGTSSEEEEEEEESSEEEEESSTTCSCEEEEEECTTEE-----------E
T ss_pred EEEEEEEEecCc-----------------cccCCceeeEEEEeccceeeecCCcccccceEEECCCce-----------E
Confidence 699999985321 111359999999999999999999999999999888531 1
Q ss_pred cccccCCCCcceeEEEEeCc--------eEEEEEecChhhHHHHHHHHHhhc
Q 001225 305 ASQVKGSNPLRYAFQVSCGN--------RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 305 ~~~~~~~~~~~~~~~i~~~~--------r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.......-..+|.|.|.+.. +.+.|.|.|...+.+|.++|..++
T Consensus 65 r~v~~~~~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra~ 116 (125)
T 1dyn_A 65 RDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG 116 (125)
T ss_dssp EECCSCSSSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred eccCCCCCCCceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHhCc
Confidence 11000001357889999864 489999999999999999998876
No 55
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.28 E-value=5.5e-06 Score=80.81 Aligned_cols=102 Identities=15% Similarity=0.245 Sum_probs=72.3
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEE-ecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVL-KPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGP 300 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vv-kds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~ 300 (1120)
|.-.|||||.|++. . ...|++||||| ++..|.|++++.+..+...++.+..- .
T Consensus 6 ~~v~~~G~L~K~g~---------------~----~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i~l~~~~-------~ 59 (130)
T 2d9v_A 6 SGLVRGGWLWRQSS---------------I----LRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNV-------R 59 (130)
T ss_dssp CCEEEEEEEEEECS---------------S----SCCEEEEEEEEETTTEEEEESSSSTTSEEEEEECTTTE-------E
T ss_pred CceeEEEEEEeecC---------------c----cCCceeeEEEEccCCEEEEEeCCCCCCcCceEecccce-------e
Confidence 34469999998731 0 15799999999 99999999988777777766554210 0
Q ss_pred Ceeecc---cc--cCCCCcceeEEEEe-CceEEEEEecChhhHHHHHHHHHhhcC
Q 001225 301 GVYLAS---QV--KGSNPLRYAFQVSC-GNRSIKLRTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 301 ~~~~~~---~~--~~~~~~~~~~~i~~-~~r~l~l~~~s~~~~~~w~~~i~~~~~ 349 (1120)
++.++. .+ .+....++.|.|.. ..|++.|.|.+...+.+|+.+|..+..
T Consensus 60 ~i~~~~~~~~v~~~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~ 114 (130)
T 2d9v_A 60 DIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANS 114 (130)
T ss_dssp EEEEGGGCSSCCCCSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEeccccccccCCCCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 111110 00 01223468999988 459999999999999999999999874
No 56
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=98.27 E-value=2.9e-06 Score=86.48 Aligned_cols=105 Identities=12% Similarity=0.123 Sum_probs=71.3
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCC-ceeEEEEEecCCCCCCCCCCC
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNT-RVLDIIVFELLPTTNGKEGPG 301 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~-~~~~v~l~D~~~~~~~~~~~~ 301 (1120)
.--+||||.||+..+.. + -...|++|||||+++.|.|.+++.+. .+..+|.+.... .
T Consensus 14 ~~i~EG~L~Kr~~~kk~------------~--~~knWKkRwFVL~~~~L~Yyk~~~~~~~~~G~I~L~~~~--------~ 71 (164)
T 2lul_A 14 NTILEEILIKRSQQKKK------------T--SPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIK--------C 71 (164)
T ss_dssp SEEEEEEEEEECCCCSS------------S--CCCCEEEEEEEEESSEEEEECCCSSSCCCCCEEEGGGCC--------E
T ss_pred CeeEEEEEEEecCCCCC------------C--CCCCceeEEEEEECCEEEEEeccCcccccccEEEEeeeE--------E
Confidence 35699999998532110 0 11469999999999999999876543 344454443211 1
Q ss_pred eeecccc--cCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhcC
Q 001225 302 VYLASQV--KGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 302 ~~~~~~~--~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~~ 349 (1120)
+...... .......+.|.|....|++.|.+.|..+..+|+.+|+++..
T Consensus 72 v~~~~~~~~~~~~~~~~~f~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i~ 121 (164)
T 2lul_A 72 VEIVKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIK 121 (164)
T ss_dssp EEECCCCSSSCCSSSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEeccccccCcccccceeEEEecCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 1110000 01123568899999999999999999999999999998863
No 57
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=98.26 E-value=3.6e-06 Score=86.35 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=70.2
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeC----CCCCceeEEEEEecCCCCC-C---
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLED----PYNTRVLDIIVFELLPTTN-G--- 296 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d----~~~~~~~~v~l~D~~~~~~-~--- 296 (1120)
-|||||.|++..+. ......|++|||||++..|.|+++ ..+.++..+|-++...... .
T Consensus 4 ikeG~L~Kr~~~~~--------------~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~ 69 (169)
T 1btk_A 4 ILESIFLKRSQQKK--------------KTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPE 69 (169)
T ss_dssp CEEEEEEEECCCSS--------------TTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCC
T ss_pred EEEEEEEEecCCCC--------------CcccCCCceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEEEeccCC
Confidence 48999999842110 001146999999999999999997 4556777776655311000 0
Q ss_pred -CCCCCee---ecccccCCCCcc------eeEEEEeCceEEEEEecChhhHHHHHHHHHhhcC
Q 001225 297 -KEGPGVY---LASQVKGSNPLR------YAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 297 -~~~~~~~---~~~~~~~~~~~~------~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~~ 349 (1120)
...++.. .+....+.++.+ +.|+|....|++.|.+.|..+..+|+.+|.....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~rt~yl~A~s~~E~~eWi~aI~~~i~ 132 (169)
T 1btk_A 70 KNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIR 132 (169)
T ss_dssp SSCCGGGCC---------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred CCcchhcccccccCcccccccccccccccccEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 0000000 000000001111 8899999999999999999999999999998763
No 58
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.25 E-value=6.2e-06 Score=77.37 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=67.8
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
.--+||||.|+. . ..|++|||||+++.|.|.+++.+ .....+.++.. ...|
T Consensus 7 ~~~~~G~L~K~~---~------------------k~Wk~RwfvL~~~~L~yyk~~~~-~~~~~~~i~l~-------~~~v 57 (107)
T 2cof_A 7 GLETSSYLNVLV---N------------------SQWKSRWCSVRDNHLHFYQDRNR-SKVAQQPLSLV-------GCEV 57 (107)
T ss_dssp CCTTCCEEEEEE---T------------------TEEEEEEEEECSSCEEEECSSTT-CSEEEEEECTT-------TCEE
T ss_pred CCcEeEEEEEec---C------------------CCcceEEEEEECCEEEEEeCCcc-cCCCeeEEecc-------ceEE
Confidence 346899999861 1 46999999999999999987754 33444444421 1123
Q ss_pred eecccccCCCCcceeEEEEeC-ceEEEEEecChhhHHHHHHHHHhhc
Q 001225 303 YLASQVKGSNPLRYAFQVSCG-NRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~~-~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
... ......+.|.|... .|.+.|.|.|...+.+|+.+|..+.
T Consensus 58 ~~~----~~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~ 100 (107)
T 2cof_A 58 VPD----PSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES 100 (107)
T ss_dssp ECC----CBTTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred EEC----CCCCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 221 11234689999887 8889999999999999999999875
No 59
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=98.23 E-value=5.4e-06 Score=77.97 Aligned_cols=103 Identities=17% Similarity=0.368 Sum_probs=69.4
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEE-ecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCee
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVL-KPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vv-kds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
-+||||.|+.. . ...|++||||| +++.|.|.+++.+..+...+-+.... ++......+.
T Consensus 6 ~~~G~L~K~g~----~---------------~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g~i~l~~~~-i~l~~~~~v~ 65 (112)
T 3aj4_A 6 VKSGWLLRQST----I---------------LKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDC-INIRTGQECR 65 (112)
T ss_dssp SEEEEEEEECS----S---------------SCCEEEEEEEECTTSEEEEESSTTCCSEEEEEEHHHHE-EEEEEGGGCC
T ss_pred eEEEEEEeeCC----C---------------CCCeeceEEEEeeCCEEEEEcCCCCCCCCccccccccc-eeeccccccc
Confidence 58999998731 0 15799999999 99999999998888777776544210 0000000010
Q ss_pred ecccccCCCCcceeEEEEe-CceEEEEEecChhhHHHHHHHHHhhc
Q 001225 304 LASQVKGSNPLRYAFQVSC-GNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~-~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
... ..+.....+.|.|.. .+|.+.|.|.|...+.+|+.+|+.+.
T Consensus 66 ~v~-~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 66 DTQ-PPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp SCC-CSTTCCGGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccC-CCCCCCcCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 000 011112357999985 48999999999999999999999864
No 60
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=98.21 E-value=6.8e-06 Score=76.58 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=70.5
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecC--eEEEEeCCCCCceeEEEEEecCCCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPG--FLVLLEDPYNTRVLDIIVFELLPTTNGKEG 299 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds--~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~ 299 (1120)
+.-.+||||.|+.. . ...|++|||||+++ .|.|.+++.+..+..+|-++.-
T Consensus 5 ~~~~~~G~L~K~g~--------------~-----~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~~g~i~L~~~-------- 57 (109)
T 2i5f_A 5 GVIIKQGCLLKQGH--------------R-----RKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGC-------- 57 (109)
T ss_dssp CCEEEEEEEEEECT--------------T-----TCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTC--------
T ss_pred CceeEEEEEEEcCC--------------C-----CCCceEEEEEEeCCCcEEEEECCCCCCCccEEEECCCC--------
Confidence 44569999998731 0 14699999999987 9999998888888888876631
Q ss_pred CCee-eccc-ccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 300 PGVY-LASQ-VKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 300 ~~~~-~~~~-~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+. +... ........+.|.|.... +.+.|.|.|...+.+|+.+|..+.
T Consensus 58 -~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 58 -VVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp -EEEEECC--------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred -EEEEccCCcccccCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 111 1100 00011246889999876 569999999999999999998753
No 61
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=98.20 E-value=4.5e-06 Score=89.51 Aligned_cols=101 Identities=13% Similarity=0.304 Sum_probs=76.1
Q ss_pred cCCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCC
Q 001225 221 YGPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGP 300 (1120)
Q Consensus 221 ~G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~ 300 (1120)
-+.-.+||||.|+.... + ..-...|++|||||+++.|.|.+++.+..+..+|.++.. .
T Consensus 55 ~~~~~k~G~L~K~g~~~--~------------~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~~~g~I~L~~~--------~ 112 (228)
T 3tfm_A 55 KQEALKQGWLHNNGGGS--S------------TLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSA--------K 112 (228)
T ss_dssp CCCSSEEEEEEECGGGC--S------------SSCGGGCEEEEEEECSSEEEEESSTTCCSEEEEEEGGGC--------S
T ss_pred CCCcceEEEEEEECCCc--C------------CcccCCceEEEEEEeCCEEEEEeCCCCcceeEEEEcCCC--------E
Confidence 35567999998874210 0 001157999999999999999999888888888877641 1
Q ss_pred CeeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhcC
Q 001225 301 GVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~~ 349 (1120)
.+. ......++|.|...+|.+.|.|.|...+.+|+.+|..+..
T Consensus 113 ~v~------~~~~k~~~F~I~t~~r~~~l~A~s~~e~~~Wv~aL~~~i~ 155 (228)
T 3tfm_A 113 EII------DNTNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHS 155 (228)
T ss_dssp EEE------EETTTTSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred Eec------cCCCCCcEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 111 1113468999999999999999999999999999988763
No 62
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=98.17 E-value=3e-06 Score=96.21 Aligned_cols=114 Identities=17% Similarity=0.246 Sum_probs=77.8
Q ss_pred ceEEeeeeccCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcccccccc
Q 001225 57 KATIVAVSRPDSSDISPMLLSYTIELQY-KQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQVA 135 (1120)
Q Consensus 57 ~~~I~~ver~~s~~~~~~~~~YtIeL~h-G~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 135 (1120)
+|.|.+++.-.... ..++|.|+++. +.-+|+|.|+|+||..||.+|+. . +|...-
T Consensus 25 ~v~I~~~~~~~~~~---~~~~Y~i~v~~~~~~~~~v~RrYsdF~~Lh~~L~~-----~--------------fp~e~g-- 80 (341)
T 2dyb_A 25 SANIADIEEKRGFT---SHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEE-----R--------------FGPDSK-- 80 (341)
T ss_dssp EEEEEEEEEEESSS---EEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHH-----H--------------TCC-----
T ss_pred EEEECCeEEecCCC---cEEEEEEEEEEcCCcEEEEEeehHHHHHHHHHHHH-----H--------------Cchhhc--
Confidence 68888886432221 25789999995 55789999999999999998874 1 110000
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc-cHHHHHHHHHHHHHHHHHhhcc-cccchhccccceec
Q 001225 136 VVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ-TVAERAKVAMQGYLNHFMGNID-IVNSREVCKFLEVS 213 (1120)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~-~~~~rrr~~LE~YL~~LL~~~~-~~~~~~l~~FLEvS 213 (1120)
.....+.+|. ||. +..+++. .+.++|+..||.||+.|+..+. +..+..+..||+..
T Consensus 81 ------------------~~~~~~~lp~---lP~-k~~~~~~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~ 138 (341)
T 2dyb_A 81 ------------------SSALAXTLPT---LPA-KVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 138 (341)
T ss_dssp ------------------------CCCC---CCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCC
T ss_pred ------------------cccccccccC---CCC-ccccCccHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Confidence 0112344555 442 2234454 6788888999999999998876 67889999999987
Q ss_pred ccc
Q 001225 214 RLS 216 (1120)
Q Consensus 214 ~ls 216 (1120)
...
T Consensus 139 ~~d 141 (341)
T 2dyb_A 139 PYD 141 (341)
T ss_dssp HHH
T ss_pred ccc
Confidence 754
No 63
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=98.17 E-value=9e-06 Score=86.36 Aligned_cols=104 Identities=13% Similarity=0.275 Sum_probs=75.6
Q ss_pred cCCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCC
Q 001225 221 YGPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGP 300 (1120)
Q Consensus 221 ~G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~ 300 (1120)
++.--++|||.|+.... +.-...|++|||||+++.|.|++++.+.++..+|-++..
T Consensus 103 l~~v~k~G~L~Kkg~~~---------------~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~p~g~I~L~~~--------- 158 (211)
T 1u5e_A 103 LPFVIKAGYLEKRRKDH---------------SFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGY--------- 158 (211)
T ss_dssp CSSEEEEEEEEEEEHHH---------------HTTTCCCEEEEEEEETTEEEEESSTTCSSCSEEEECTTC---------
T ss_pred cCCccEEEEEEEECCCC---------------CcCCCCcEeEEEEEECCEEEEEcCCCCccceEEEEeCCc---------
Confidence 34557999999985310 001157999999999999999999888888888877531
Q ss_pred CeeecccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 301 GVYLASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+.............+.|.|.... |.+.|.|.+...+.+|+.+|..+.
T Consensus 159 ~~v~~~~~~~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai 207 (211)
T 1u5e_A 159 DVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 207 (211)
T ss_dssp EEEECGGGCSSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCccccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 111110000122346899999875 999999999999999999999875
No 64
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=98.16 E-value=1.5e-05 Score=73.81 Aligned_cols=77 Identities=13% Similarity=0.323 Sum_probs=57.6
Q ss_pred CCcceEEEEEecCeEEEEeCCCCC--ceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeC-ceEEEEEecC
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNT--RVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCG-NRSIKLRTTN 333 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~--~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~r~l~l~~~s 333 (1120)
..|++|||||+++.|.|.+++.+. .+..+|-+.. ..+.. .....+.|.|... .|.+.|.|.|
T Consensus 13 k~Wk~R~fvL~~~~L~Yy~~~~~~~~~~~g~i~L~~---------~~v~~------~~~~~~~F~i~~~~~r~~~l~a~s 77 (103)
T 3rcp_A 13 TGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAV---------CEIKV------HSADNTRMELIIPGEQHFYMKAVN 77 (103)
T ss_dssp TCEEEEEEEEETTEEEEESSCC---CCCSCEEEGGG---------CEEEC------CTTCSSEEEEEETTTEEEEEECSS
T ss_pred CCeeceEEEEECCEEEEEecCCcccCCcccEEEeee---------eEEEE------cCCCCceEEEEeCCCCEEEEECCC
Confidence 579999999999999999987642 3666655431 12211 1123567888875 8999999999
Q ss_pred hhhHHHHHHHHHhhc
Q 001225 334 SGKVKEWVAAINDAG 348 (1120)
Q Consensus 334 ~~~~~~w~~~i~~~~ 348 (1120)
.....+|+.+|..+.
T Consensus 78 ~~e~~~Wi~al~~a~ 92 (103)
T 3rcp_A 78 AAERQRWLVALGSSK 92 (103)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999876
No 65
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=98.15 E-value=9.1e-06 Score=78.38 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=72.1
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecC--eEEEEeCCCCCceeEEEEEecCCCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPG--FLVLLEDPYNTRVLDIIVFELLPTTNGKEG 299 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds--~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~ 299 (1120)
+.-.+||||.|+.. . ...|++|||||+++ +|.|++++.+..+..+|-++.-
T Consensus 16 ~~~~~~G~L~K~g~--------------~-----~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~-------- 68 (129)
T 1x05_A 16 GVIIKQGCLLKQGH--------------R-----RKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGC-------- 68 (129)
T ss_dssp SEEEEEEEEEECCS--------------S-----CCCCEEEEEEEEETTTEEEEECSSCCSSCSEEEECTTC--------
T ss_pred CCceEEEEEEecCC--------------C-----CCCCeeEEEEEeCCCCEEEEECCCCCCcceeEEEccCC--------
Confidence 44579999998621 0 14699999999986 9999998888888888876631
Q ss_pred CCeeecccc--cCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 300 PGVYLASQV--KGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 300 ~~~~~~~~~--~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+...... .......+.|.|.... |.+.|.|.+...+.+|+.+|..+.
T Consensus 69 -~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~ 119 (129)
T 1x05_A 69 -VVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 119 (129)
T ss_dssp -EEEECCCCCCSSSCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHH
T ss_pred -EEEEccCCccccccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 11110000 0011256899999875 669999999999999999999986
No 66
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=98.14 E-value=1.2e-05 Score=78.24 Aligned_cols=95 Identities=13% Similarity=0.192 Sum_probs=66.3
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCC---CCceeEEEEEecCCCCCCCCCC
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPY---NTRVLDIIVFELLPTTNGKEGP 300 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~---~~~~~~v~l~D~~~~~~~~~~~ 300 (1120)
--+||||.|++. . ...|++|||||++++|.|+++.+ +..+..+|.+.. .
T Consensus 6 ~~k~G~L~Kk~~--~-----------------~k~W~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L~~---------c 57 (120)
T 4a6h_A 6 EIKSGFLERRSK--F-----------------LKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSE---------C 57 (120)
T ss_dssp CSEEEEEEEEET--T-----------------TTEEEEEEEEECSSEEEEESSCCTTTCCSCSEEEEGGG---------E
T ss_pred ccEEEEEEEcCC--C-----------------CCCCccEEEEEeCCEEEEEcCCCcCcCCCceEEEECCC---------C
Confidence 358999998841 0 14699999999999999998765 445777777652 1
Q ss_pred CeeecccccCC-------CCcceeEEEEeCc-------eEEEEEecChhhHHHHHHHHHhhc
Q 001225 301 GVYLASQVKGS-------NPLRYAFQVSCGN-------RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 301 ~~~~~~~~~~~-------~~~~~~~~i~~~~-------r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.|.... .+. .+..+.|.|.... +...|++.|..++.+|+.+|+.+.
T Consensus 58 ~v~~~~--~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 58 TVTEHS--RKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp EEEEEC--CCCC---------CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEEcc--cccccccccccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 222111 110 0134556666543 699999999999999999999875
No 67
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=98.13 E-value=2.3e-06 Score=98.22 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=71.5
Q ss_pred ceEEeeeeccC--CCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccc
Q 001225 57 KATIVAVSRPD--SSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQV 134 (1120)
Q Consensus 57 ~~~I~~ver~~--s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 134 (1120)
.+.|.+-++.. .|. ..+++|+|..+. -.|+|.|||+||..||.+|.. . ++.
T Consensus 22 ~i~V~dp~k~~~~~g~--~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~-----~-------~p~----------- 74 (366)
T 3dyt_A 22 DCVVADPRKGSKMYGL--KSYIEYQLTPTN--TNRSVNHRYKHFDWLYERLLV-----K-------FGS----------- 74 (366)
T ss_dssp CEEEECGGGSSSCCCC--CSSCEEEEEETT--CSCCEEEEHHHHHHHHHHHHH-----H-------HTT-----------
T ss_pred EEEEcCceeecCCCCC--cCeEEEEEEEec--CcEEEEeeHHHHHHHHHHHHH-----h-------CCC-----------
Confidence 78887777654 222 247899999875 379999999999999998874 1 000
Q ss_pred ccccCCCCCCCCCCCCCCCccccccCCCCccccccccccccc--ccHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 135 AVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGK--QTVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~--~~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
...+|+ ||. |..+|+ ..+.++|+..||.||+.|+..+.+.++..+..||+.
T Consensus 75 -----------------------~~~iP~---lP~-K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~ 127 (366)
T 3dyt_A 75 -----------------------AIPIPS---LPD-KQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNF 127 (366)
T ss_dssp -----------------------TSCCCC---CC------------CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHC
T ss_pred -----------------------cCcCCC---CcC-CcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCC
Confidence 012233 332 223443 267777778999999999999999999999999998
Q ss_pred c
Q 001225 213 S 213 (1120)
Q Consensus 213 S 213 (1120)
+
T Consensus 128 ~ 128 (366)
T 3dyt_A 128 R 128 (366)
T ss_dssp S
T ss_pred C
Confidence 5
No 68
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=98.11 E-value=1.2e-05 Score=81.56 Aligned_cols=105 Identities=14% Similarity=0.289 Sum_probs=65.8
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCC--CceeEEEEEecCCCCCCCCCCCe
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYN--TRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~--~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
-+||||.+++.....| ... +. ....|++|||||++..|.|++++.+ ..+..++-++.. ...+
T Consensus 4 ~~eG~L~~k~~~~~~g--kK~---g~----~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~-------~~~~ 67 (168)
T 2j59_M 4 AKEGWLHFRPLVTDKG--KRV---GG----SIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVN-------ACLI 67 (168)
T ss_dssp CEEEEEEEEECC---------------------CCEEEEEEEETTEEEEESCTTCC--------CEECS-------SCEE
T ss_pred cEEEEEeeeeecccCC--ccc---CC----CCCCceEEEEEEeCCEEEEEECCcccccccCCceEeccc-------ceEE
Confidence 4899999774211100 000 01 1257999999999999999998754 445555544431 0111
Q ss_pred eecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 303 YLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+. .......|.|.|....|.+.|.|.+...+.+|+.+|..+.
T Consensus 68 ~~~---~~~~~~~~~F~I~t~~r~~~l~A~s~~e~~~Wi~ai~~~~ 110 (168)
T 2j59_M 68 DIS---YSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESS 110 (168)
T ss_dssp EEC---SSSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred Eec---cccCCCCCEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHH
Confidence 111 1223456899999999999999999999999999999876
No 69
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=98.08 E-value=2e-05 Score=75.11 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=67.9
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeec
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLA 305 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~ 305 (1120)
|||||.+|.+.+. .....|++|||||+++.|.|+++..+..+..++ |.. +..+...
T Consensus 2 keG~L~kK~g~~~---------------~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p~~~i--~l~-------~~~~~~~ 57 (112)
T 3cxb_B 2 KEGMLHYKAGTSY---------------LGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSV--NMG-------GEQCGGC 57 (112)
T ss_dssp EEEEEEECCSCCC---------------SSCCCCEEEEEEEETTEEEEESSSSCCSCSEEE--ETT-------C-CEEEE
T ss_pred ceEEEEEeCCCCC---------------CCCCCceEEEEEEECCEEEEECCCCCCCccceE--Eec-------CCEEEee
Confidence 8999987632110 012679999999999999999988776666544 321 0111100
Q ss_pred ccccCCCCcceeEEEEeC-ceEEEEEecChhhHHHHHHHHHhhc
Q 001225 306 SQVKGSNPLRYAFQVSCG-NRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 306 ~~~~~~~~~~~~~~i~~~-~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
. .......+|.|+|... .+.+.+.+.|..++.+|+.+|..+.
T Consensus 58 ~-~~~~~~r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~ 100 (112)
T 3cxb_B 58 R-RANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAV 100 (112)
T ss_dssp E-ECCCSSCTTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred e-ccCCCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 0 0122345689999854 6799999999999999999999876
No 70
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.07 E-value=1.6e-05 Score=76.31 Aligned_cols=82 Identities=15% Similarity=0.292 Sum_probs=63.5
Q ss_pred CCcceEEEEEecC---eEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecC
Q 001225 257 NKWHKVWAVLKPG---FLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTN 333 (1120)
Q Consensus 257 ~~w~krW~vvkds---~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s 333 (1120)
..|+||||||+++ .|.|.+++.+.++...|.+.. ..|..... .+.....|.|+|...++...+.+.|
T Consensus 21 ~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g~I~L~g---------~~V~~~~~-~~~~~~~~~Fki~~~~~~y~f~A~s 90 (112)
T 2coc_A 21 ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPS---------CKLSVPDP-EERLDSGHVWKLQWAKQSWYLSASS 90 (112)
T ss_dssp SCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGG---------CEEECCCS-SSCCSSSEEEEEEETTEEEEEEESS
T ss_pred CCceEEEEEEECCCccEEEEECCCCccCcceEEEcCC---------CEEEecCc-ccccCCCCEEEEecCCeEEEEEcCC
Confidence 5699999999985 666678888888888777652 23332111 1223357899999999999999999
Q ss_pred hhhHHHHHHHHHhhc
Q 001225 334 SGKVKEWVAAINDAG 348 (1120)
Q Consensus 334 ~~~~~~w~~~i~~~~ 348 (1120)
...+.+|+.+|..+.
T Consensus 91 ~e~~~~Wl~al~~A~ 105 (112)
T 2coc_A 91 AELQQQWLETLSTAA 105 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999976
No 71
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=98.05 E-value=7.8e-06 Score=79.25 Aligned_cols=100 Identities=14% Similarity=0.201 Sum_probs=68.1
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCC---CceeEEEEEecCCCCCCCCCC
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYN---TRVLDIIVFELLPTTNGKEGP 300 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~---~~~~~v~l~D~~~~~~~~~~~ 300 (1120)
--++|||.|+..+.. ...|++|||||+++.|.|+++|.+ ..+..+|-+..-.. .
T Consensus 5 v~~~G~L~K~~~~~~-----------------~~~WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L~~~~~------~ 61 (134)
T 2y7b_A 5 VEERGFLTIFEDVSG-----------------FGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTS------R 61 (134)
T ss_dssp CCEEEEEEEEEEETT-----------------EEEEEEEEEEEETTEEEEESSHHHHTTSCCSEEEEGGGBCS------S
T ss_pred ceEEeeEEEEcCCCC-----------------CCCcEEEEEEEECCEEEEECCCCcccccCceEEEEhhhCcc------c
Confidence 358999998842100 147999999999999999986654 67888876653110 0
Q ss_pred CeeecccccCCCCcceeEEEEeC--------------------ceEEEEEecChhhHHHHHHHHHhhc
Q 001225 301 GVYLASQVKGSNPLRYAFQVSCG--------------------NRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~i~~~--------------------~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.|.... .+.....+.|.|.+. .|.+.|.|.+..++..|+.+|..+.
T Consensus 62 ~v~~~~--~~~~~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i 127 (134)
T 2y7b_A 62 QIEPAN--REFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVL 127 (134)
T ss_dssp SCEECC--TTTCCCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccccc--hhhccCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHH
Confidence 121111 011234577888751 1579999999999999999998764
No 72
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.05 E-value=1.8e-05 Score=76.12 Aligned_cols=99 Identities=19% Similarity=0.279 Sum_probs=70.1
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEe--cCeEEEEeCC-CCCceeEEEEEecCCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLK--PGFLVLLEDP-YNTRVLDIIVFELLPTTNGKE 298 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvk--ds~l~y~~d~-~~~~~~~v~l~D~~~~~~~~~ 298 (1120)
+.--+||||.|+.. . ...|++|||||+ .++|.|.+++ .+..+..+|-++.-
T Consensus 16 ~~~~~~G~L~K~g~--------------~-----~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~~g~i~L~~~------- 69 (129)
T 1x1g_A 16 GTVVKQGYLAKQGH--------------K-----RKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGS------- 69 (129)
T ss_dssp SEEEEEEEEEEECS--------------S-----SSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTC-------
T ss_pred CCEEEEEEEEEECC--------------C-----CCCeeeEEEEEeCCCCeEEEeCCCCcCCccceEEECcCC-------
Confidence 34569999998731 0 157999999999 3799999877 66777777766531
Q ss_pred CCCeeecccc-----cCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 299 GPGVYLASQV-----KGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 299 ~~~~~~~~~~-----~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+...... ...+...+.|.|.... |.+.|.|.+...+.+|+.+|..+.
T Consensus 70 --~v~~~~~~~~p~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~ 123 (129)
T 1x1g_A 70 --LVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT 123 (129)
T ss_dssp --CCEECCSSSSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHS
T ss_pred --EEEEeCCCCCcccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 11100000 0011146889998886 669999999999999999999976
No 73
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=98.04 E-value=3e-06 Score=97.89 Aligned_cols=103 Identities=12% Similarity=0.150 Sum_probs=68.3
Q ss_pred ceEEeeeeccC--CCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccccc
Q 001225 57 KATIVAVSRPD--SSDISPMLLSYTIELQYKQFKWSLVKKASQILYLHFAVKKRAIIDELHEKQGQVKEWLQSIGIVDQV 134 (1120)
Q Consensus 57 ~~~I~~ver~~--s~~~~~~~~~YtIeL~hG~fkWtIkrk~k~f~~LH~~Lk~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 134 (1120)
.+.|.+-++.. .|. ..+++|+|..+.. .|+|.|||+||..||.+|.. . +
T Consensus 43 ~i~V~dp~k~~~~~g~--~~y~~Y~I~~~~~--~~~V~RRYsdF~~L~~~L~~-----~-------------------~- 93 (386)
T 4akv_A 43 ACSVEDPTKQTKFKGI--KSYISYKLTPTHA--ASPVYRRYKHFDWLYNRLLH-----K-------------------F- 93 (386)
T ss_dssp CEEEECC--------------CCEEEEETTS--SSCEEECHHHHHHHHHHHHH-----H-------------------C-
T ss_pred EEEEcCceEecCCCCC--cCeEEEEEEEEeC--CeEEEcCHHHHHHHHHHHHH-----h-------------------C-
Confidence 77777776654 232 2478999998754 69999999999999998874 1 1
Q ss_pred ccccCCCCCCCCCCCCCCCccccccCCCCcccccccccccccc--cHHHHHHHHHHHHHHHHHhhcccccchhcccccee
Q 001225 135 AVVQDDDEPDDGAVPMHPSESVRNRYVPSMAALSILRPVLGKQ--TVAERAKVAMQGYLNHFMGNIDIVNSREVCKFLEV 212 (1120)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~r~~Ps~~~lp~~r~~l~~~--~~~~rrr~~LE~YL~~LL~~~~~~~~~~l~~FLEv 212 (1120)
| ...+|+ ||. |..+|+. .+.++|+..||.||+.|+..+.+.++..+..||+.
T Consensus 94 --------------p--------~~~iP~---lP~-K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 147 (386)
T 4akv_A 94 --------------T--------VISVPH---LPE-KQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSC 147 (386)
T ss_dssp --------------S--------SSCCCC---CCC-CC------CCTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSC
T ss_pred --------------C--------CCCCCC---CCC-CcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCC
Confidence 0 012333 332 2334432 66667778999999999999999999999999998
Q ss_pred cc
Q 001225 213 SR 214 (1120)
Q Consensus 213 S~ 214 (1120)
+.
T Consensus 148 ~~ 149 (386)
T 4akv_A 148 LD 149 (386)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 74
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=1.1e-05 Score=77.24 Aligned_cols=92 Identities=17% Similarity=0.284 Sum_probs=68.9
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEe--cCeEEEEeCCCCC--ceeEEEEEecCCCCCCCC
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLK--PGFLVLLEDPYNT--RVLDIIVFELLPTTNGKE 298 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvk--ds~l~y~~d~~~~--~~~~v~l~D~~~~~~~~~ 298 (1120)
..-+||||.|+.. . ...|++|||||+ +..|.|.+++.+. .+..+|-++.
T Consensus 7 ~~~~~G~L~K~~~--~-----------------~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~-------- 59 (120)
T 2d9x_A 7 GENVYGYLMKYTN--L-----------------VTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAG-------- 59 (120)
T ss_dssp CCCCEEEEEEEEE--T-----------------TTEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTT--------
T ss_pred CCcEEEEEEecCC--C-----------------CCCceEEEEEEECCCCEEEEEecCcccCCCccceEEcce--------
Confidence 4569999998741 0 146999999999 6899999877653 6777776653
Q ss_pred CCCeeecccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 299 GPGVYLASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..|... ....+.|.|.... |.+.|.|.+...+.+|+.+|..+.
T Consensus 60 -~~v~~~------~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~ 103 (120)
T 2d9x_A 60 -AVISPS------DEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICT 103 (120)
T ss_dssp -CCEECC------SSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHH
T ss_pred -EEEEec------CCCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 122221 1235789998875 999999999999999999998765
No 75
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=98.04 E-value=1.6e-05 Score=73.69 Aligned_cols=101 Identities=17% Similarity=0.291 Sum_probs=63.6
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCC----ceeEEEEEecCCCCCCCCCCC
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNT----RVLDIIVFELLPTTNGKEGPG 301 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~----~~~~v~l~D~~~~~~~~~~~~ 301 (1120)
.||||.+++.....| -. . ....|++|||||+++.|.|.+++.+. .+...+.+|.. ...
T Consensus 1 ~eG~L~kk~~~~~~g------k~-~----~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~-------~~~ 62 (106)
T 1btn_A 1 MEGFLNRKHEWEAHN------KK-A----SSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLK-------EAI 62 (106)
T ss_dssp CEEEEEEEEEECSTT------CB-C----SCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECT-------TCE
T ss_pred CccEEEEEEEEeCCC------cc-C----CCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECC-------CCE
Confidence 489999986311111 00 0 12579999999999999999876521 11111122211 011
Q ss_pred eeecccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhh
Q 001225 302 VYLASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDA 347 (1120)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~ 347 (1120)
+.+.. +.....+.|.|.... |.+.|.|.|...+.+|+.+|..+
T Consensus 63 ~~~~~---~~~~~~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 63 CEVAL---DYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp EEECS---SCCSSSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred EEEcc---cccCCccEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 12111 223356899998654 99999999999999999999763
No 76
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.04 E-value=1.7e-05 Score=78.71 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=72.5
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecC-----eEEEEeCCC-CCceeEEEEEecCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPG-----FLVLLEDPY-NTRVLDIIVFELLPTTN 295 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds-----~l~y~~d~~-~~~~~~v~l~D~~~~~~ 295 (1120)
+.--+||||.|+...+. . ......|++|||||+++ .|.|+++.. +..+..+|.++.-
T Consensus 16 ~~~~~~G~L~K~~~~~~------~-------~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~---- 78 (150)
T 1wg7_A 16 GGITKHGWLYKGNMNSA------I-------SVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSC---- 78 (150)
T ss_dssp CCCCCEEEEEECCCCSS------H-------HHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTC----
T ss_pred CCeeEEEEEEEecCCcc------c-------cccccCeeEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecccC----
Confidence 55679999998731100 0 00125799999999998 999998876 6778887766531
Q ss_pred CCCCCCeeecccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 296 GKEGPGVYLASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+... ......+.|.|.... |.+.|.|.+...+.+|+.+|..+.
T Consensus 79 -----~~~~~----~~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai 123 (150)
T 1wg7_A 79 -----MGVVQ----NNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKIL 123 (150)
T ss_dssp -----CEECC----CCSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred -----EEEec----CCCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHH
Confidence 11111 112356899999885 999999999999999999998764
No 77
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=98.01 E-value=4.4e-06 Score=80.27 Aligned_cols=97 Identities=15% Similarity=0.254 Sum_probs=63.6
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEe-cCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLK-PGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvk-ds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
--+||||.|+.. ....|++|||||+ ++.|.|++++.+..+..++-++.. .. ..+
T Consensus 8 ~~~~G~L~K~g~-------------------~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g~i~L~~~---~~---~~~ 62 (125)
T 1unq_A 8 IVKEGWLHKRGE-------------------YIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNF---SV---AQC 62 (125)
T ss_dssp EEEEEEEEEECS-------------------SSCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEE---EC---TTC
T ss_pred eeEEeeEEeccC-------------------CccCccCcEEEEecCCEEEEEeCCCCCCCCceeEccce---eE---Eee
Confidence 359999998731 0157999999999 579999987766443322211110 00 000
Q ss_pred eecccccCCCCcceeEEEEe----CceEEEEEecChhhHHHHHHHHHhhc
Q 001225 303 YLASQVKGSNPLRYAFQVSC----GNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~----~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+.. ......+.|.|.+ ..|.+.|.+.|...+.+|+.+|..+.
T Consensus 63 ~~~~---~~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~ 109 (125)
T 1unq_A 63 QLMK---TERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVA 109 (125)
T ss_dssp EEEE---ECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred eecc---cccCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHH
Confidence 0000 1123467899984 56889999999999999999998765
No 78
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=98.00 E-value=3e-05 Score=75.73 Aligned_cols=101 Identities=14% Similarity=0.242 Sum_probs=68.1
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCC-----------CCceeEEEEEecC
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPY-----------NTRVLDIIVFELL 291 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~-----------~~~~~~v~l~D~~ 291 (1120)
.-.|||||.+++.... | . ... ..|++|||||+++.|.|++++. +..+..+|-+..
T Consensus 11 ~~~k~G~L~kk~~~~~-G---------~--~~~-k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~- 76 (129)
T 2p0d_A 11 EVEKSGLLNMTKIAQG-G---------R--KLR-KNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRG- 76 (129)
T ss_dssp SEEEEEEEEEEEEEET-T---------E--ECC-CCCEEEEEEEESSEEEEESCC--------------CCSEEEECTT-
T ss_pred ceeEEEEEEEeeeccC-C---------C--cCC-CCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCC-
Confidence 3459999998642110 1 0 001 5799999999999999999873 335555554431
Q ss_pred CCCCCCCCCCeeecccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 292 PTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..+..+ .+....++.|.|.... +...|.|.|..++.+|+.+|..+.
T Consensus 77 --------~~v~~~---~~~~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i 123 (129)
T 2p0d_A 77 --------AALAHG---RHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVI 123 (129)
T ss_dssp --------CEEEEC---TTSCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred --------cEEEEC---CCCCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 222222 1223346899998764 678999999999999999998865
No 79
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=97.95 E-value=2.2e-05 Score=96.17 Aligned_cols=121 Identities=20% Similarity=0.280 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhccC-----eEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCc
Q 001225 784 IHSAYCSLIESAEH-----FIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGG 858 (1120)
Q Consensus 784 I~~ayl~aI~~A~h-----~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~ 858 (1120)
...+++++|++|++ .|.|+ .|.++. + ..|.+||.++ +++|++|.|++.....|. ..
T Consensus 353 sf~~vi~~I~~A~~DP~V~sIk~t-lYr~~~---d----s~Iv~ALi~A------A~rGv~V~vLvel~arfd-----ee 413 (705)
T 2o8r_A 353 TYDYVVRLLMEAAISPDVSEIRLT-QYRVAE---N----SSIISALEAA------AQSGKKVSVFVELKARFD-----EE 413 (705)
T ss_dssp CSHHHHHHHHHHHTCTTEEEEEEE-ESCCCS---C----CHHHHHHHHH------HHTTCEEEEEECCCSCC--------
T ss_pred hHHHHHHHHHHhccCCCceEEEEE-EEEEcC---C----HHHHHHHHHH------HHCCCEEEEEEeCCCCcc-----hh
Confidence 35688999999999 99975 466653 2 2688888764 456999999998654331 11
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccccceeeeeeEEEEecc--------
Q 001225 859 AATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDDR-------- 930 (1120)
Q Consensus 859 ~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~-------- 930 (1120)
+ .+ ...++|.+ +|+.+. |++ .+ ..+|+|++|||++
T Consensus 414 ~-ni----------------~wa~~Le~-aGv~Vv-----~g~-------~~-------lk~H~Ki~lIdrr~~~~g~~~ 456 (705)
T 2o8r_A 414 N-NL----------------RLSERMRR-SGIRIV-----YSM-------PG-------LKVHAKTALILYHTPAGERPQ 456 (705)
T ss_dssp --CH----------------HHHHHHHH-HTCEEE-----ECC-------TT-------CCBCCCEEEEEECCCSSSCCC
T ss_pred h-hH----------------HHHHHHHH-CCCEEE-----Ecc-------CC-------CCceeEEEEEecccccCCcee
Confidence 0 01 23467777 788752 222 12 2789999999988
Q ss_pred -EEEEcccccccCCCCCCCCceeeEEEEccchh
Q 001225 931 -AALIGSSNINDRSLLGSRDSEIDVVIEDKEFL 962 (1120)
Q Consensus 931 -~~iIGSANiN~RSm~G~~DsEi~v~i~D~~~v 962 (1120)
++.+|++|+|+.+.. .-+++++.+.|++.+
T Consensus 457 ~y~~igtGN~n~~tar--iy~D~~l~t~~~~i~ 487 (705)
T 2o8r_A 457 GIALLSTGNFNETTAR--IYSDTTLMTANTDIV 487 (705)
T ss_dssp EEEEEESSCSSCCCSS--CEEEEEEEECCHHHH
T ss_pred EEEeccccceeeeEEE--EEeeeeeeecChHHH
Confidence 688899999999984 789999999998754
No 80
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=97.90 E-value=4.6e-05 Score=87.99 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=73.5
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCee
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
--|+|||.|+.. . ....|++|||||++..|.|++++.+..++.+|.+..... ...+.
T Consensus 269 ~~k~G~L~K~g~-~-----------------~~k~WKkRwFVL~~~~L~YYk~~~d~~~~G~I~L~~~~~-----~~~v~ 325 (386)
T 3lju_X 269 YLKEGYMEKTGP-K-----------------QTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKES-----GYTVL 325 (386)
T ss_dssp CSEEEEEEECCT-T-----------------SCSCCEEEEEEEETTEEEEESSTTCSBCSEEEECCCGGG-----TCEEE
T ss_pred cceeeeEEEECC-C-----------------CCCCCcccEEEEECCEEEEEecCCCcccceEEEeeccee-----eeeec
Confidence 458999998631 0 014799999999999999999998888888887643110 01111
Q ss_pred eccccc-CCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 304 LASQVK-GSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 304 ~~~~~~-~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+.... ..+...++|.|....|++.|.+.|...+.+|+.+|..+.
T Consensus 326 ~~~~~~~~~~~~~~~F~I~t~~rty~l~A~s~~e~~~Wi~aL~~~i 371 (386)
T 3lju_X 326 HGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAV 371 (386)
T ss_dssp ESCCTTCCSCCSCEEEEEECSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCCccccccCCCcEEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 111100 011125899999999999999999999999999999876
No 81
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.89 E-value=2.6e-05 Score=74.82 Aligned_cols=106 Identities=15% Similarity=0.242 Sum_probs=68.5
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCc----eeEEEEEecCCCCCCC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTR----VLDIIVFELLPTTNGK 297 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~----~~~v~l~D~~~~~~~~ 297 (1120)
+.-.+||||.++......| - ..-...|++|||||+++.|.|++++.+.. +...+.+|..
T Consensus 6 ~~v~~eG~L~kk~~~~~~g------k-----~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~------ 68 (123)
T 1wjm_A 6 SGEQMEGMLCRKQEMEAFG------K-----KAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLA------ 68 (123)
T ss_dssp CCCCEEEEEEEEEEEEETT------E-----ECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECT------
T ss_pred CCeEEEEEEEEEEEEeCCC------c-----cCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEcc------
Confidence 4456999999875311101 0 00125799999999999999998765421 1111222210
Q ss_pred CCCCeeecccccCCCCcceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 298 EGPGVYLASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+..+.... +....+|.|.|.... +...|.|.|...+.+|+.+|+.+.
T Consensus 69 -~~~~~~~~---~~~~r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~ 116 (123)
T 1wjm_A 69 -RAQGSVAF---DYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116 (123)
T ss_dssp -TCEEEECT---TCSSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred -CcEEeecc---cccCCCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 11122211 223457899998765 899999999999999999999875
No 82
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=97.85 E-value=2.9e-05 Score=75.30 Aligned_cols=98 Identities=16% Similarity=0.281 Sum_probs=64.6
Q ss_pred cCCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCC---------CceeEEEEEecC
Q 001225 221 YGPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYN---------TRVLDIIVFELL 291 (1120)
Q Consensus 221 ~G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~---------~~~~~v~l~D~~ 291 (1120)
+..-.|||+|.|+.. -...|++|||||+++.|.|.+++.. .....+|-+..
T Consensus 9 ~~~~~k~G~L~K~g~-------------------~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~- 68 (124)
T 2w2x_D 9 KDEHKQQGELYMWDS-------------------IDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNT- 68 (124)
T ss_dssp ----CCEEEEEEEET-------------------TTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGG-
T ss_pred hhhcceeEEEEEECC-------------------CCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCC-
Confidence 445579999998731 0146999999999999999987432 11234433321
Q ss_pred CCCCCCCCCCeeecccccCCCCcceeEEEEeC---ceEEEEEecChhhHHHHHHHHHhhc
Q 001225 292 PTTNGKEGPGVYLASQVKGSNPLRYAFQVSCG---NRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..+..... +.....+.|+|.+. .+.+.|.|.|...+.+|+.+|..+.
T Consensus 69 --------~~v~~~~~--~~~~k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~ 118 (124)
T 2w2x_D 69 --------YNVVKAPQ--GKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREIT 118 (124)
T ss_dssp --------EEEEECTT--CBTTBSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHH
T ss_pred --------CEEEEccC--CcCCCCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHH
Confidence 11111110 11235689999875 4679999999999999999999876
No 83
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=97.83 E-value=6.2e-05 Score=72.94 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=31.2
Q ss_pred cceeEEEEeCc-eEEEEEecChhhHHHHHHHHHhhc
Q 001225 314 LRYAFQVSCGN-RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 314 ~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.++.|.|.... |++.|.|.|..+..+|+.+|..+.
T Consensus 88 ~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i 123 (128)
T 2rlo_A 88 ENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQI 123 (128)
T ss_dssp CCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 46789998887 999999999999999999998754
No 84
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=97.70 E-value=0.00012 Score=83.19 Aligned_cols=93 Identities=16% Similarity=0.282 Sum_probs=69.3
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCee
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
.-++|||.|+.+ . ...|++|||||+++.|.|.+++.+..+..+|.++.- .+.
T Consensus 213 ~~k~G~L~K~g~--------------~-----~k~WkkRwFVL~~~~L~Yyk~~~~~~p~G~I~L~~~---------~v~ 264 (347)
T 2r09_A 213 PDREGWLLKLGG--------------R-----VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENL---------SIR 264 (347)
T ss_dssp CCEEEEEEEECS--------------S-----SCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTC---------EEE
T ss_pred cccCCeeEecCC--------------C-----cccceeEEEEEcCCEEEEEcCCCccCCcEEEEcCCe---------EEE
Confidence 369999998731 0 157999999999999999999888888888776531 111
Q ss_pred ecccccCCCCcceeEEEEeC----------------------ceEEEEEecChhhHHHHHHHHHhhc
Q 001225 304 LASQVKGSNPLRYAFQVSCG----------------------NRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~~----------------------~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.. ......+.|.|... .|.+.|.|.|..++.+|+.+|..+.
T Consensus 265 ~~----~~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai 327 (347)
T 2r09_A 265 EV----EDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 327 (347)
T ss_dssp EE----CCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred Ec----cCCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 11 11233566666543 5899999999999999999999875
No 85
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=97.63 E-value=0.00019 Score=78.74 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=69.4
Q ss_pred CCcceeeEEEEEecc---CCCCCCCCCcccccccc-cccCCcceEEEEEecCeEEEEeCC------CCCceeEEEEEecC
Q 001225 222 GPKLKEGYVMVKHLS---NISKTDDAIHCTGCCFS-CCSNKWHKVWAVLKPGFLVLLEDP------YNTRVLDIIVFELL 291 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~---~~~~~~~~~~~~~~~~~-~~~~~w~krW~vvkds~l~y~~d~------~~~~~~~v~l~D~~ 291 (1120)
|.-.|||||.+++.. +. | . .. .-...|++|||||+++.|.|++++ .+..+..+|-++.
T Consensus 9 ~~v~K~G~L~~k~~~~~~K~-g---------~-~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~- 76 (263)
T 3a8p_A 9 GVVRKAGWLFFKPLVTLQKE-R---------K-LELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAED- 76 (263)
T ss_dssp -CEEEEEEEEEEEEEEEEGG-G---------E-EEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTT-
T ss_pred CCeEEEEEeeecccccccCC-C---------C-ccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCC-
Confidence 556799999865422 11 1 0 00 002579999999999999999974 3345555554431
Q ss_pred CCCCCCCCCCeeecccccCCCCcceeEEEEe-CceEEEEEecChhhHHHHHHHHHhhc
Q 001225 292 PTTNGKEGPGVYLASQVKGSNPLRYAFQVSC-GNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..+... .+....++.|.|.+ ..+...|.|.|...+.+|+.+|..+.
T Consensus 77 --------~~v~~~---~~~~kk~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~ 123 (263)
T 3a8p_A 77 --------SIVQSV---PEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSAC 123 (263)
T ss_dssp --------CEEEEC---TTCSSCSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred --------cEEEEC---CcCCCCCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 122211 12223478999998 68999999999999999999999875
No 86
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=97.62 E-value=8e-05 Score=81.78 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=70.0
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecC-------eEEEEeCCCC-----CceeEEEEEe
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPG-------FLVLLEDPYN-----TRVLDIIVFE 289 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds-------~l~y~~d~~~-----~~~~~v~l~D 289 (1120)
+.--|+|||.|+ ..|+||||||++. .|.|.+++.+ .++..+|-++
T Consensus 8 ~~v~k~G~L~K~-----------------------K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~ 64 (264)
T 1qqg_A 8 SDVRKVGYLRKP-----------------------KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLE 64 (264)
T ss_dssp -CEEEEEEEECT-----------------------TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGG
T ss_pred CCccEEEEEEEC-----------------------CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEee
Confidence 344689999754 2599999999999 9999998765 5677777665
Q ss_pred cCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 290 LLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.- ..|... ......+.|.|....|.+.|.|.|...+.+|+.+|..+.
T Consensus 65 ~~--------~~V~~~----~~~~~~~~F~I~t~~rty~l~A~se~e~~~Wi~aL~~~~ 111 (264)
T 1qqg_A 65 SC--------FNINKR----ADSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLH 111 (264)
T ss_dssp GE--------EEEEEE----CCSSCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred ce--------EEEEec----cCCCCCcEEEEEECCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 31 112111 112346899999999999999999999999999999976
No 87
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=97.58 E-value=0.00015 Score=83.34 Aligned_cols=95 Identities=19% Similarity=0.339 Sum_probs=65.4
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCee
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
--|||||.|+...+ + ....|++||||++++.|.|.++. +..+..+ +|.. ...+.
T Consensus 278 ~~k~G~L~K~~~~~--------------~--~~~~WkkRwfvL~~~~L~y~k~~-~~~~~~~--i~l~-------~~~v~ 331 (385)
T 2q13_A 278 TRKAGYLNARNKTG--------------L--VSSTWDRQFYFTQGGNLMSQARG-DVAGGLA--MDID-------NCSVM 331 (385)
T ss_dssp SCCEEEEEEC------------------------CCEEEEEEEETTEEEEECSS-CSSCEEE--EECT-------TCEEE
T ss_pred ccEEEEEEEecCCC--------------C--CcCCceeEEEEEECCEEEEecCC-CcCCCce--EEcc-------ceEEE
Confidence 46999999873210 0 11359999999999999999873 3333333 3321 11222
Q ss_pred ecccccCCCCcceeEEEEeCc--eEEEEEecChhhHHHHHHHHHhhc
Q 001225 304 LASQVKGSNPLRYAFQVSCGN--RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~~~--r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.. +....++.|.|.+.. |++.|.|.|...+.+|+.+|..+.
T Consensus 332 ~~----~~~~r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~ 374 (385)
T 2q13_A 332 AV----DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNIS 374 (385)
T ss_dssp EE----CCTTCSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHHH
T ss_pred ec----cccCCCceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 21 123456899999988 999999999999999999999876
No 88
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=97.54 E-value=0.00015 Score=69.58 Aligned_cols=110 Identities=18% Similarity=0.328 Sum_probs=67.4
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCee
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
-.|||||.+++.....| . ..-...|++|||||+++.|.|++++.+........+.....++.. ...+.
T Consensus 8 v~k~G~L~rK~~~~~~g--k---------k~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~-~~~v~ 75 (122)
T 1dro_A 8 EGHEGYVTRKHEWDSTT--K---------KASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQ-NAAIE 75 (122)
T ss_dssp SSEEEEEEEECSCCCCC--C---------TTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCS-SCCCE
T ss_pred eEEEEEEEEEEEEeCCC--c---------cCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECC-CCEEE
Confidence 45999998874311101 0 001267999999999999999998765433100000000001100 11222
Q ss_pred ecccccCCCCcceeEEEEe-CceEEEEEecChhhHHHHHHHHHhhc
Q 001225 304 LASQVKGSNPLRYAFQVSC-GNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~-~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
... +....+|.|+|.. ..+...+.|.|...+.+|+.+|+.+.
T Consensus 76 ~~~---d~~kr~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i 118 (122)
T 1dro_A 76 IAS---DYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118 (122)
T ss_dssp ECC---SSSSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHH
T ss_pred eCC---CCCCCCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 221 2223568999985 56899999999999999999999876
No 89
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=97.53 E-value=0.00016 Score=79.25 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=69.6
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
+..+||||.|++. + . ..|++|||||+++.|.|++++.+..+..++.+.... ...+
T Consensus 167 ~p~~~G~L~k~~~--------------~----~-k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i~l~~l~------~~~v 221 (291)
T 3tca_A 167 VPELEGALYLKED--------------G----K-KSWKRRYFLLRASGIYYVPKGKTKTSRDLACFIQFE------NVNI 221 (291)
T ss_dssp CCCCEEEEEEECT--------------T----S-SCEEEEEEEECSSEEEECCTTCCSSTTTCEEEEEGG------GCEE
T ss_pred CCceEEEEEEeCC--------------C----C-CCceEEEEEEeCCEEEEEecCccccccCceeeccce------eEEE
Confidence 3468999998841 0 1 579999999999999999888777766655443211 1122
Q ss_pred eecccc--cCCCCcceeEEEEeCc------eEEEEEecChhhHHHHHHHHHhhc
Q 001225 303 YLASQV--KGSNPLRYAFQVSCGN------RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~~--~~~~~~~~~~~i~~~~------r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..+... ....+..|+|.|...+ +...|.|.|......|+.+|..+.
T Consensus 222 ~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak 275 (291)
T 3tca_A 222 YYGIQCKMKYKAPTDHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK 275 (291)
T ss_dssp EEECSHHHHHCCSSSCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred EecCccccccCCCCCeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 222111 1123567999997643 568899999999999999998753
No 90
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=97.52 E-value=0.0001 Score=85.07 Aligned_cols=92 Identities=16% Similarity=0.246 Sum_probs=66.9
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEE--ecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVL--KPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vv--kds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
.|||||.|+.+ -...|++||||| +++.|.|++++.+..+..+|.++.. .+
T Consensus 147 ~keG~L~KrG~-------------------~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p~g~I~L~~~---------~~ 198 (386)
T 3lju_X 147 YREGFLWKRGR-------------------DNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHL---------NA 198 (386)
T ss_dssp EEEEEEEEECS-------------------SSCCEEEEEEEEETTTTEEEEEC-----CCSEEEEGGGE---------EE
T ss_pred ccccceeeecc-------------------ccCCceEEEEEEEcCCCEEEEECCCCccCcccEEEeecc---------EE
Confidence 59999999831 015799999999 9999999999888899999988731 11
Q ss_pred eecccccCCCCcceeEEEE----eCceEEEEEecChhhHHHHHHHHHhh
Q 001225 303 YLASQVKGSNPLRYAFQVS----CGNRSIKLRTTNSGKVKEWVAAINDA 347 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~----~~~r~l~l~~~s~~~~~~w~~~i~~~ 347 (1120)
... . +..+..++|.|. .+.|.+.+.+.|...+.+|+.+|..+
T Consensus 199 ~~~-~--~~~~~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a 244 (386)
T 3lju_X 199 TFQ-P--AKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAA 244 (386)
T ss_dssp EEC-H--HHHTSTTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEc-c--cccCCCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhc
Confidence 111 0 111346788887 67799999999999999999999875
No 91
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=0.00013 Score=72.25 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=59.9
Q ss_pred CCcceEEEEEecCeEEEEeCCCCC--ceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeC----ceEEEEE
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNT--RVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCG----NRSIKLR 330 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~--~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~r~l~l~ 330 (1120)
..|++|||++|+.+|.|++++++. .+..+|.+.. .+|.-. . .-.+.+++|++... .|.+.|+
T Consensus 26 K~~KrrWFvlk~~~L~YyK~kee~~~ePig~I~L~g---------ceV~pd--~-~~~~~kf~ikl~iPs~~g~r~y~l~ 93 (137)
T 2ys3_A 26 KGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKG---------CEVVPD--V-NVSGQKFCIKLLVPSPEGMSEIYLR 93 (137)
T ss_dssp SSSCCCEEEECSSCEEEESSTTTTTSCCSCCBCTTT---------CEEEEC--C-BGGGTBEEEEEEEECSSSEEEEEEE
T ss_pred ccceeEEEEEeCCEEEEECCchhccCCCceEEECCC---------CEEecc--c-cccCCceEEEEEccCCCCceEEEEE
Confidence 468999999999999999888774 7777776552 122111 0 00135778777654 4999999
Q ss_pred ecChhhHHHHHHHHHhhc
Q 001225 331 TTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 331 ~~s~~~~~~w~~~i~~~~ 348 (1120)
|.|..++.+|++++..+.
T Consensus 94 cdsEeqy~~WMaA~rlAs 111 (137)
T 2ys3_A 94 CQDEQQYARWMAGCRLAS 111 (137)
T ss_dssp ESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999999876
No 92
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=97.46 E-value=0.00014 Score=84.22 Aligned_cols=94 Identities=22% Similarity=0.378 Sum_probs=64.2
Q ss_pred ceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeee
Q 001225 225 LKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYL 304 (1120)
Q Consensus 225 gkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~ 304 (1120)
-|||||.||+..+. -...|+||||||+++.|.|.+..... ...+ +|.. ...|..
T Consensus 302 ~k~G~L~k~~~~g~----------------~~~~W~rrwfvl~~~~l~y~~~~~~~-~~~~--~~l~-------~~~v~~ 355 (407)
T 4h8s_A 302 QKAGYLNLRNKTGL----------------VTTTWERLYFFTQGGNLMCQPRGAVA-GGLI--QDLD-------NCSVMA 355 (407)
T ss_dssp CCEEEEEEEEECSS----------------SCEEEEEEEEEECSSCEECCCTTCSS-CCCC--BCSS-------CCEEEE
T ss_pred eeeceeeeeccCCC----------------CCCCceEEEEEEECCEEEEEeCCCCC-CCeE--EECC-------ceEEEE
Confidence 48999999853111 01469999999999999999754322 2111 1210 122322
Q ss_pred cccccCCCCcceeEEEEeCc--eEEEEEecChhhHHHHHHHHHhhc
Q 001225 305 ASQVKGSNPLRYAFQVSCGN--RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 305 ~~~~~~~~~~~~~~~i~~~~--r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
. .....++.|.|...+ |++.|.+.|...+..|+.+|+.+.
T Consensus 356 ~----~~~~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~ 397 (407)
T 4h8s_A 356 V----DCEDRRYCFQITTPNGKSGIILQAESRKENEEWICAINNIS 397 (407)
T ss_dssp E----CCTTCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHH
T ss_pred C----CCCCCCceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHHH
Confidence 2 123457899998754 679999999999999999999876
No 93
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=97.44 E-value=0.0012 Score=64.74 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=68.5
Q ss_pred eeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCC---------CCceeEEEEEecCCCCCC
Q 001225 226 KEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPY---------NTRVLDIIVFELLPTTNG 296 (1120)
Q Consensus 226 kEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~---------~~~~~~v~l~D~~~~~~~ 296 (1120)
.||||..+...+. | ... -...|+++||||+++.|.|++... ...+..++.+..
T Consensus 3 ~~G~L~rk~llK~-G--~k~---------~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g------ 64 (126)
T 2dtc_A 3 MEGPLRRKTLLKE-G--RKP---------ALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVG------ 64 (126)
T ss_dssp EEEEEEEEEEEBT-T--BCC---------SSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTT------
T ss_pred eeeeeeeeehhhc-C--Ccc---------cccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCC------
Confidence 5899988755332 1 000 115799999999999999998442 234565655542
Q ss_pred CCCCCeeecccccCCCCcceeEEEEeC--ceEEEEEecChhhHHHHHHHHHhhcC
Q 001225 297 KEGPGVYLASQVKGSNPLRYAFQVSCG--NRSIKLRTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~r~l~l~~~s~~~~~~w~~~i~~~~~ 349 (1120)
-.|... +.....+-|.|.+. +....+.+.|...+..|+.+|..+..
T Consensus 65 ---~~V~~~----e~~~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~ 112 (126)
T 2dtc_A 65 ---WMVQLP----DDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACK 112 (126)
T ss_dssp ---CEEECC----CCTTSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ---CEEEec----CCCCCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 223221 22224678999965 67899999999999999999999873
No 94
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=97.34 E-value=0.00087 Score=68.39 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcccccchhccccceecc
Q 001225 185 VAMQGYLNHFMGNIDIVNSREVCKFLEVSR 214 (1120)
Q Consensus 185 ~~LE~YL~~LL~~~~~~~~~~l~~FLEvS~ 214 (1120)
..||.||+.++..+.+.++..+..||+.+.
T Consensus 122 ~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~ 151 (161)
T 3hpc_X 122 SSHEVFLQRLSSHPVLSKDRNFHVFLEYDQ 151 (161)
T ss_dssp HHHHHHHHHHHHSTTGGGCHHHHHHHHCCS
T ss_pred HHHHHHHHHHHcCCCcccCcHHHhhcCCCc
Confidence 459999999999999999999999999874
No 95
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=97.30 E-value=0.0015 Score=63.10 Aligned_cols=106 Identities=16% Similarity=0.277 Sum_probs=67.1
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCce----------eEEEEEecC
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRV----------LDIIVFELL 291 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~----------~~v~l~D~~ 291 (1120)
|.-.|||||.+++.... | . ......|+++||||+++.|.|++|+.+... .-...+|..
T Consensus 6 ~~v~keG~L~rK~~~~~-g--k---------k~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~ 73 (124)
T 3pp2_A 6 KTLDKAGVLHRTKTADK-G--K---------RLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELR 73 (124)
T ss_dssp ---CEEEEEEEEEEEET-T--E---------ECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECT
T ss_pred CcEEEEEEEEEEEeccC-C--c---------cCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcC
Confidence 44579999998753111 1 0 012257999999999999999988665421 122334421
Q ss_pred CCCCCCCCCCeeecccccCCCCcceeEEEEeC-ceEEEEEecChhhHHHHHHHHHhhc
Q 001225 292 PTTNGKEGPGVYLASQVKGSNPLRYAFQVSCG-NRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+..+..+. ++....+|-|+|... ++...+.+.+...+.+|+.+|..+.
T Consensus 74 -------~a~v~~~~--~d~~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI 122 (124)
T 3pp2_A 74 -------GATLSWAP--KDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGI 122 (124)
T ss_dssp -------TCEEEECC--GGGCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred -------CCEEEecc--cccCCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 12223221 012234678999764 5789999999999999999999864
No 96
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=97.23 E-value=0.00053 Score=66.21 Aligned_cols=86 Identities=9% Similarity=0.217 Sum_probs=58.2
Q ss_pred CcceEEEEEecCeEEEEeCCCC---CceeEEEEEecCCCCC-CCCCCCeeecccccCCCCcceeEEEEeC------ceEE
Q 001225 258 KWHKVWAVLKPGFLVLLEDPYN---TRVLDIIVFELLPTTN-GKEGPGVYLASQVKGSNPLRYAFQVSCG------NRSI 327 (1120)
Q Consensus 258 ~w~krW~vvkds~l~y~~d~~~---~~~~~v~l~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~r~l 327 (1120)
.|++|||||.++-|.|+++..+ .++..+|-+|..+... +..+..+.. .++...+-|+|... .+.+
T Consensus 19 ~Wkkr~~vL~~~kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~-----~~~~~p~iF~I~~~~~~~~~~~~l 93 (117)
T 2rov_A 19 GWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRA-----DAKEIPRIFQILYANEGISSAKNL 93 (117)
T ss_dssp CCCEEEEEEETTEEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSS-----CTTTGGGEEEEEECSSSSTTCEEE
T ss_pred CcEEEEEEEECCEEEEEECCCCcccCCceEEEECcccEEEEEccccccccc-----ccccCCcEEEEEeCCCCCCCCcEE
Confidence 5999999999999999986543 2566666454432211 110111111 12334577999753 5899
Q ss_pred EEEecChhhHHHHHHHHHhhc
Q 001225 328 KLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 328 ~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.|.+.|.....+|+.+|....
T Consensus 94 ~l~A~s~~e~~~WV~aL~~~i 114 (117)
T 2rov_A 94 LLLANSTEEQQKWVSRLVKKI 114 (117)
T ss_dssp EEECSSHHHHHHHHHHHHHHC
T ss_pred EEEeCCHHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 97
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=97.21 E-value=0.0017 Score=65.99 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=61.6
Q ss_pred CCcceEEEEEecCeEEEEeCCCC--CceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEe----CceEEEEE
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYN--TRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSC----GNRSIKLR 330 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~--~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~r~l~l~ 330 (1120)
..|+++|||+||..|.|++++++ |.+..+|-+- +.+|...- .-...+|+|++.. |.+.+-|+
T Consensus 64 KgyKryWFv~kd~~LsyYKskEe~~geP~~~I~Lr---------GCEVtpDV---nva~~Kf~IkL~vP~~~gm~e~~Lr 131 (173)
T 4f7h_A 64 KGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLR---------GCEVTPDV---NISGQKFNIKLLIPVAEGMNEIWLR 131 (173)
T ss_dssp CCCEEEEEEEETTEEEEESCGGGCSSCCSEEEECT---------TCEEEEEE---ETTTTEEEEEEEEEETTEEEEEEEE
T ss_pred ccceeEEEEEeCCEEEEEcCHhHhcCCCceEEecC---------ceEEeccc---cccccceeEEEeccCCCCcceeeee
Confidence 57899999999999999999887 7787777653 23333211 1123577887766 67889999
Q ss_pred ecChhhHHHHHHHHHhhc
Q 001225 331 TTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 331 ~~s~~~~~~w~~~i~~~~ 348 (1120)
|.+..++.+|+++..-+.
T Consensus 132 cd~E~qya~WMAAcrLAs 149 (173)
T 4f7h_A 132 CDNEKQYAHWMAACRLAS 149 (173)
T ss_dssp ESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhhhc
Confidence 999999999999998876
No 98
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=97.20 E-value=0.0012 Score=72.20 Aligned_cols=100 Identities=13% Similarity=0.204 Sum_probs=69.2
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEE-ecCCCCCCCCCCC
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVF-ELLPTTNGKEGPG 301 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~-D~~~~~~~~~~~~ 301 (1120)
...+||+|.++..+ ...|+||||+||+|.|.|.+...+...+++..| +-. +.+
T Consensus 131 ~P~~~G~L~~ke~~-------------------~K~WkkRyfvLr~sgLy~~~k~~sk~~r~l~~~~~L~-------~~~ 184 (256)
T 3hk0_A 131 SPEIQGFLHVKELG-------------------KKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLE-------DSN 184 (256)
T ss_dssp CEEEEEEEEEECTT-------------------SSCEEEEEEEEETTEEEEESSTTCCCGGGEEEEECCT-------TEE
T ss_pred CCcceeEEEEecCC-------------------CCcceEEEEEEeCCEEEEEecCCCCccccceEEEEcC-------CCE
Confidence 34699999987420 157999999999999999986665556665333 321 234
Q ss_pred eeeccccc--CCCCcceeEEEEeCce------EEEEEecChhhHHHHHHHHHhhc
Q 001225 302 VYLASQVK--GSNPLRYAFQVSCGNR------SIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 302 ~~~~~~~~--~~~~~~~~~~i~~~~r------~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
|..+...+ -..++.++|.|..... ...|-|.+......|+.+|..+.
T Consensus 185 vy~~~~~kKk~kaPt~~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak 239 (256)
T 3hk0_A 185 IFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLK 239 (256)
T ss_dssp EEEESSTHHHHCCSSSEEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCCCCCEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHH
Confidence 54443211 2446789999985433 37778888899999999998764
No 99
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=97.08 E-value=0.0022 Score=64.42 Aligned_cols=87 Identities=23% Similarity=0.166 Sum_probs=67.7
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCee
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVY 303 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 303 (1120)
-.|+|||.||++ ..|++||||+++.-.+|+-||....+...|.+|.. ..+.
T Consensus 52 Ilk~G~v~KrkG---------------------l~~kkR~liLT~~PrL~Yvdp~~~~~KGeIpls~~--------l~ve 102 (151)
T 1w1g_A 52 ILKMGPVDKRKG---------------------LFARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQE--------LRPE 102 (151)
T ss_dssp EEEEEEEEEEET---------------------TEEEEEEEEEETTTEEEEEETTTTEEEEEECCCTT--------CEEE
T ss_pred EEEEEEEEeccc---------------------CcceeEEEEEcCCceEEEEcCccccccceEecCCC--------eeEE
Confidence 369999999852 23899999999876666667999999999999842 2222
Q ss_pred ecccccCCCCcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhc
Q 001225 304 LASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+ +. ...|.|...+|+..|.+. ...+.+|..+|+++.
T Consensus 103 ~----k~----~~~F~I~Tp~RtY~~~d~-~~~AqeWv~aI~~~~ 138 (151)
T 1w1g_A 103 A----KN----FKTFFVHTPNRTYYLMDP-SGNAHKWCRKIQEVW 138 (151)
T ss_dssp E----SS----SSEEEEEETTEEEEEECT-TSCHHHHHHHHHHHH
T ss_pred E----cC----CCEEEEECCCceEEEEcC-ccCHHHHHHHHHHHH
Confidence 2 11 236999999999999887 888999999999875
No 100
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=97.06 E-value=0.0024 Score=64.22 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=59.9
Q ss_pred CCcceEEEEEecCeEEEEeCCCC--CceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeC----ceEEEEE
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYN--TRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCG----NRSIKLR 330 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~--~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~r~l~l~ 330 (1120)
..|+++|||+||..|.|++++++ |.+...|-+- +.+|.-.- .-...+|+|++... ...+-|+
T Consensus 43 KgfKryWfv~kDt~LsyYKSkEe~~geP~~~inLr---------GCEVtPDV---nva~~Kf~ikL~ip~~~gm~e~~Lr 110 (165)
T 4bbk_A 43 KACKQYWFVFKDTSIAYFKNKELEQGEPIEKLNLR---------GCEIVPDV---NVSGRKFGIKLLIPVADGMNEVYLR 110 (165)
T ss_dssp -CCEEEEEEEETTEEEEESSGGGTTSCCSEEEECT---------TCEEEEEE---ETTTTEEEEEEEEEETTEEEEEEEE
T ss_pred ccceeEEEEEeCCEEEEEcCHHHhcCCCceEEecC---------ccEEeccc---ccccceeeEEEecCCCCcceeeeee
Confidence 57899999999999999998887 6677776553 23332110 11245788888655 5689999
Q ss_pred ecChhhHHHHHHHHHhhc
Q 001225 331 TTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 331 ~~s~~~~~~w~~~i~~~~ 348 (1120)
|.+..++.+|+++..-+.
T Consensus 111 cdsE~QYa~WMAAcrLAs 128 (165)
T 4bbk_A 111 CDHEDQYARWMAACILAS 128 (165)
T ss_dssp ESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhhcc
Confidence 999999999999998876
No 101
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=96.79 E-value=0.0055 Score=61.63 Aligned_cols=38 Identities=18% Similarity=0.458 Sum_probs=33.1
Q ss_pred CCCcceeEEEEeC---ceEEEEEecChhhHHHHHHHHHhhc
Q 001225 311 SNPLRYAFQVSCG---NRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 311 ~~~~~~~~~i~~~---~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
+++..+-|+|... .+.+.+-+.|...+.+|+.+|.+++
T Consensus 107 ~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa 147 (150)
T 2fjl_A 107 KNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA 147 (150)
T ss_dssp SSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 3456789999877 4589999999999999999999987
No 102
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=96.54 E-value=0.0049 Score=68.15 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=62.6
Q ss_pred CcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEE-EEecCCCCCCCCCCC
Q 001225 223 PKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDII-VFELLPTTNGKEGPG 301 (1120)
Q Consensus 223 ~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~-l~D~~~~~~~~~~~~ 301 (1120)
+..++|||.++.. + ...|+||||+||+|.|.|++...+...++.. |.+-. +.+
T Consensus 157 ~pe~~G~L~~k~~----~---------------~k~WkkRyfvLr~sgLyy~~K~~sk~~r~l~~l~~L~-------~~~ 210 (281)
T 4gmv_A 157 VPEIEGVLWLKDD----G---------------KKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLD-------HVN 210 (281)
T ss_dssp CCCCEEEEEEECT----T---------------SSCEEEEEEEECSSCEEEC---------CCEEEECGG-------GCE
T ss_pred CCccEEEEEEECC----C---------------CCCCeEEEEEEeCCEEEEEeCCCCCccccceEEEEcC-------CcE
Confidence 4579999998742 0 1479999999999999998765444455433 33321 245
Q ss_pred eeecccc--cCCCCcceeEEEEeCc------eEEEEEecChhhHHHHHHHHHhhc
Q 001225 302 VYLASQV--KGSNPLRYAFQVSCGN------RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 302 ~~~~~~~--~~~~~~~~~~~i~~~~------r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
|+.+... +-..++.++|.|.... +...|-|.+......|+.+|..+.
T Consensus 211 VY~~~~~kkk~kaPt~~~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak 265 (281)
T 4gmv_A 211 VYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAK 265 (281)
T ss_dssp EEEESSHHHHTCCSCSCEEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCCCCcEEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 5554321 1245789999998632 345666777778899999998764
No 103
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=96.42 E-value=0.0032 Score=72.95 Aligned_cols=97 Identities=15% Similarity=0.285 Sum_probs=59.0
Q ss_pred cceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEe-cCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCe
Q 001225 224 KLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLK-PGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGV 302 (1120)
Q Consensus 224 KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvk-ds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~ 302 (1120)
--|||||.|++. . ...|+|||||++ |+-|.|+++.....+..++.+.... . .++
T Consensus 6 v~keG~L~K~g~-~------------------~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i~l~~~~-~-----~~~ 60 (446)
T 4ejn_A 6 IVKEGWLHKRGE-Y------------------IKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFS-V-----AQC 60 (446)
T ss_dssp EEEEEEEEEEET-T------------------TTEEEEEEEEEETTSBEEEESSCC-------CCCGGGB-C-----TTC
T ss_pred EEEEeeEEeecc-c------------------cccccceEEEEeeCCEEEEEecCCCCCccCcccccCcc-c-----cce
Confidence 469999998731 0 157999999998 8999999987766666655443210 0 011
Q ss_pred eecccccCCCCcceeEEEEeCceE-E---EEEecChhhHHHHHHHHHhhc
Q 001225 303 YLASQVKGSNPLRYAFQVSCGNRS-I---KLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~~~r~-l---~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+.. ......+.|.|...+.+ . .+.+.+......|..+|..+.
T Consensus 61 ~~~~---~~~~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i 107 (446)
T 4ejn_A 61 QLMK---TERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVA 107 (446)
T ss_dssp EEEE---ECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred eecC---CCCCCCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhh
Confidence 1111 11233567888654432 2 567788889999999999986
No 104
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=96.09 E-value=0.0045 Score=70.29 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCchh
Q 001225 781 EGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLIPGFQGGIDDGGAA 860 (1120)
Q Consensus 781 E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~P~f~g~~~d~~~~ 860 (1120)
...|.+...++|.+|++.|||..++.. ...+..+|. +| .++||+|.+++|..|+. ..
T Consensus 117 ~~~I~~ri~eli~~A~~eI~i~~~~~~---------l~~l~~~L~----~a--~~RGV~Vrvi~~~~~d~-------a~- 173 (342)
T 3qph_A 117 FDEAIEMFRESLYSAKNEVIVVTPSEF---------FETIREDLI----KT--LERGVTVSLYIDKIPDL-------SE- 173 (342)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECHHH---------HHHHHHHHH----HH--HHTTCEEEEEESSCCCC-------GG-
T ss_pred HHHHHHHHHHHHHhhheEEEEEeCHHH---------HHHHHHHHH----HH--HhCCCEEEEEECCCCCh-------hh-
Confidence 568999999999999999999864321 123334443 33 35799999999866531 00
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCcccee-eEeeeccccccCCCCCccccceeeeeeEEEEeccEEEEccccc
Q 001225 861 TVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYI-SFYGLRSYGRLCDGGPVATSQVYVHSKVMIIDDRAALIGSSNI 939 (1120)
Q Consensus 861 ~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi-~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANi 939 (1120)
..|. .....|.+. ..| -++|+|++++++|++|.
T Consensus 174 --------------------------------~~~~~~~~~vR~~~----~~p----------~l~ivD~~~alv~~~~~ 207 (342)
T 3qph_A 174 --------------------------------FKGKGNFFVRQFYK----LNH----------LIGMTDGKEVVTIQNAT 207 (342)
T ss_dssp --------------------------------GSSSSEEEEEECSC----CCS----------EEEEETTTEEEEECSSS
T ss_pred --------------------------------hhccccceEEEEcC----CCc----------EEEEEECCEEEEecccc
Confidence 0010 111233322 111 25999999999999998
Q ss_pred -cc---CCCCCCCCceeeEEEEccc
Q 001225 940 -ND---RSLLGSRDSEIDVVIEDKE 960 (1120)
Q Consensus 940 -N~---RSm~G~~DsEi~v~i~D~~ 960 (1120)
++ ||+. .+.| ++++.|+.
T Consensus 208 ~~~~~~rS~~--~~~e-aliv~~~~ 229 (342)
T 3qph_A 208 FDSIGPPSFK--STYP-EIIFSQYS 229 (342)
T ss_dssp CCSSCCCEEE--ECCH-HHHHHHHH
T ss_pred cccccccccc--cccc-EEEEECHH
Confidence 44 9994 7888 88888776
No 105
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=94.51 E-value=0.072 Score=58.85 Aligned_cols=113 Identities=22% Similarity=0.287 Sum_probs=64.0
Q ss_pred cCCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCC--CCCCC
Q 001225 221 YGPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPT--TNGKE 298 (1120)
Q Consensus 221 ~G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~--~~~~~ 298 (1120)
.|.-.|||||..++.....+ ++-.. ......|+++|+||+++.|.|+++...... +. +..+. +...+
T Consensus 8 ~~~v~k~G~L~rK~~l~~~k-----~~K~~--~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~-~~---~~~p~~~I~L~g 76 (279)
T 3a8n_A 8 QGTVRKAGALAVKNFLVHKK-----NKKVE--SATRRKWKHYWVSLKGCTLFFYETDGRSGI-DH---NSVPKHAVWVEN 76 (279)
T ss_dssp --CCSCEEEEEEEEEEEEET-----TTEEE--CCCCCCCEEEEEEEETTEECCBCCC------------CCCSSCCBCCS
T ss_pred CCceeEEEEEEEEEEecccC-----CcccC--CccCCCCeEEEEEEeCCEEEEEeccccccc-cc---ccCCCceEeccC
Confidence 46678999998775421100 00000 012268999999999999999986543221 11 11110 11110
Q ss_pred CCCeeecccccCCCCcceeEEEEe-CceEEEEEecChhhHHHHHHHHHhhc
Q 001225 299 GPGVYLASQVKGSNPLRYAFQVSC-GNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~i~~-~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
..+..+ .+.+..++-|+|.+ ..+.+.+.+.+...+..|+.+|..+.
T Consensus 77 -a~v~~a---~d~~kKk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~ 123 (279)
T 3a8n_A 77 -SIVQAV---PEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSAC 123 (279)
T ss_dssp -CEECCC---TTSSSSCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHH
T ss_pred -cEEEec---cccCCCCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHH
Confidence 111101 12223457788875 45678999999999999999999875
No 106
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.49 E-value=0.29 Score=47.78 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=61.1
Q ss_pred CCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCC---
Q 001225 222 GPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKE--- 298 (1120)
Q Consensus 222 G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~--- 298 (1120)
+.-.|+|+|.+.+-.+ |. .+|+|+||||... .+ ..+.-+=+||..-......
T Consensus 10 e~~vk~G~L~~q~q~~--------------fg---kKWrk~w~vLy~~------S~--~GvaRLE~yd~~ek~~r~~~~r 64 (127)
T 2d9w_A 10 DGAVKQGFLYLQQQQT--------------FG---KKWRRFGASLYGG------SD--CALARLELQEGPEKPRRCEAAR 64 (127)
T ss_dssp CCSSEEEEEEECBCSS--------------SS---CBCCEEEEEEECC------SS--SSCCEEEEECCCSCSSSCSCCE
T ss_pred CccccceEEEecccch--------------hh---hhhheeEEEEecC------CC--CCceeeeeeeccCccccCCCCc
Confidence 3467999999875211 22 4799999996543 22 1244445566532211100
Q ss_pred -----CCCeeecccccC-CC-CcceeEEEEeCceEEEEEecChhhHHHHHHHHHhhcC
Q 001225 299 -----GPGVYLASQVKG-SN-PLRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDAGL 349 (1120)
Q Consensus 299 -----~~~~~~~~~~~~-~~-~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~~ 349 (1120)
..-+++.....+ .- ...+.|.|.+.+|...|-+.+. +..+|+..|-+.+.
T Consensus 65 rVIrLsdCisV~~~~~e~~~pk~~~aF~l~T~er~~~laAe~~-E~~~Wi~~ic~~aF 121 (127)
T 2d9w_A 65 KVIRLSDCLRVAEAGGEASSPRDTSAFFLETKERLYLLAAPAA-ERGDWVQAICLLAF 121 (127)
T ss_dssp EEECGGGEEEEEECCSCSSSCSSCEEEEEEESSCEEEEEECHH-HHHHHHHHHHHHHT
T ss_pred eEEEhhhCCeEecccCccCCCCcceEEEEEeCCcEEEEEeCcH-HHHHHHHHHHHHhc
Confidence 011222221112 00 1247899999999999999975 89999999998873
No 107
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=94.35 E-value=0.12 Score=58.71 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=62.4
Q ss_pred EEecH-HHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEcccchhhhhhcch
Q 001225 379 WFIDG-QAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKEVSIALKINSM 457 (1120)
Q Consensus 379 ~lvDG-~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~~~~al~~~s~ 457 (1120)
|.+.| +.....+.+.|.+|+++|++..|. ..-..+...|.++++|||+|++++.+.... ..
T Consensus 112 ~~i~G~~~I~~ri~eli~~A~~eI~i~~~~-------------~~l~~l~~~L~~a~~RGV~Vrvi~~~~~d~-----a~ 173 (342)
T 3qph_A 112 WRSRSFDEAIEMFRESLYSAKNEVIVVTPS-------------EFFETIREDLIKTLERGVTVSLYIDKIPDL-----SE 173 (342)
T ss_dssp EEESSHHHHHHHHHHHHHHCSSEEEEEECH-------------HHHHHHHHHHHHHHHTTCEEEEEESSCCCC-----GG
T ss_pred EEEcCHHHHHHHHHHHHHhhheEEEEEeCH-------------HHHHHHHHHHHHHHhCCCEEEEEECCCCCh-----hh
Confidence 44544 667899999999999999996541 123577789999999999999997443211 11
Q ss_pred hhHHHHHcccCCeEEEEc-CCCCCcccccccCcceEEEEeCCeEEEccccC
Q 001225 458 YSKKRLLKIHENVKVLRH-PDHVSTGVYLWSHHEKLVIVDYRISFIGGLDL 507 (1120)
Q Consensus 458 ~~k~~L~~~~~nI~V~r~-P~~~~~~~~~~rhH~KivVID~~vAFvGGinL 507 (1120)
+. .. .+....|. + . ...++|+|++.|++|.-|.
T Consensus 174 ~~-----~~-~~~~~vR~~~-~----------~p~l~ivD~~~alv~~~~~ 207 (342)
T 3qph_A 174 FK-----GK-GNFFVRQFYK-L----------NHLIGMTDGKEVVTIQNAT 207 (342)
T ss_dssp GS-----SS-SEEEEEECSC-C----------CSEEEEETTTEEEEECSSS
T ss_pred hh-----cc-ccceEEEEcC-C----------CcEEEEEECCEEEEecccc
Confidence 11 00 12222232 3 1 1126999999999998776
No 108
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=93.48 E-value=0.1 Score=55.63 Aligned_cols=38 Identities=18% Similarity=0.419 Sum_probs=28.4
Q ss_pred cCCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCC
Q 001225 221 YGPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDP 277 (1120)
Q Consensus 221 ~G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~ 277 (1120)
-|...+||||.|+.+ ....|+|||||+|++.|+|+...
T Consensus 18 ~~~~~~~g~l~~~~~-------------------~~~~w~~rw~vl~~~~~~~~~~~ 55 (228)
T 3tfm_A 18 PGSPYFHSFLYMNGG-------------------LMNSWKRRWCVLKDETFLWFRSK 55 (228)
T ss_dssp ---CCEEEEEEECCT-------------------TTCCCEEEEEEEETTEEEEESSC
T ss_pred CCCCceEEEEeecCc-------------------ccccceEEEEEEeCCEEEEeccC
Confidence 466889999998721 11569999999999999999743
No 109
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=93.40 E-value=0.12 Score=55.53 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=45.5
Q ss_pred EEecH-HHHHHHHHHHHHhhceEEEEeeecCCceEEEEcCCCCCchHHHHHHHHHHhhCCcEEEEEEccc
Q 001225 379 WFIDG-QAAFEAIASAIKNAKSQILITGWWLCPELYLIRPFENHPSSRLDALLEEKAKEGIQVYILLYKE 447 (1120)
Q Consensus 379 ~lvDG-~~yf~al~~aI~~Ak~~I~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~kA~rGVkVrILvyd~ 447 (1120)
|.+.| +.....+.+.|++|+++|+|.-| ...-.+|.+.|.+|++|||.|+|+++..
T Consensus 3 W~ik~~e~Ii~r~~e~I~~A~~el~lsi~-------------~e~l~~l~~~L~~A~~rGV~V~liv~~~ 59 (233)
T 2f5t_X 3 WRSRSFDEAIEMFRESLYSAKNEVIVVTP-------------SEFFETIREDLIKTLERGVTVSLYIDKI 59 (233)
T ss_dssp EEESCHHHHHHHHHHHHHTCSSEEEEEEC-------------GGGHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred eEECCHHHHHHHHHHHHHHhhhEEEEEeC-------------HHHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 45544 45788999999999999999432 2345789999999999999999999864
No 110
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=80.68 E-value=3.1 Score=44.90 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=56.8
Q ss_pred CCeEEEEEecCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCccceeeEeeeccccccCCCCCccc
Q 001225 836 KYFRVIVVLPLIPGFQGGIDDGGAATVRAIIHWQYRTISREKTSILHKLSMLLGPKTRDYISFYGLRSYGRLCDGGPVAT 915 (1120)
Q Consensus 836 ~gv~V~IVlP~~P~f~g~~~d~~~~~~r~im~~qy~TI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vt 915 (1120)
+|.+|.+|+-.. +.. ...+-+ ..++|.. .|++++-+ + | . +
T Consensus 63 ~Ggkv~~IlGgs------tsQ-rlTSKQ----------------avEElL~-cGvev~Ii----N-r-------k-R--- 102 (358)
T 2c1l_A 63 QGGRVIAILGGS------TSQ-RLSSRQ----------------VVEELLN-RGVEVHII----N-R-------K-R--- 102 (358)
T ss_dssp TTCEEEEEEECC------SSS-CCBBHH----------------HHHHHHH-TTCEEEEE----E-C-------S-S---
T ss_pred cCCcEEEEEccc------ccc-cccHHH----------------HHHHHHh-cCCceEEe----e-e-------e-e---
Confidence 599999998743 222 122333 3467777 78877532 1 1 1 1
Q ss_pred cceeeeeeEEEE---eccEEEEcccccccCCCCCCCCceeeEEEEccc
Q 001225 916 SQVYVHSKVMII---DDRAALIGSSNINDRSLLGSRDSEIDVVIEDKE 960 (1120)
Q Consensus 916 e~iyvHSKlmIV---DD~~~iIGSANiN~RSm~G~~DsEi~v~i~D~~ 960 (1120)
.+|+|+-.. |...+||||+|+..=-| ..+-|++|.+++..
T Consensus 103 ---i~HaK~Yg~~~n~g~~LIV~SgNfT~pGm--sQNvE~sllld~~T 145 (358)
T 2c1l_A 103 ---ILHAKLYGTSNNLGESLVVSSGNFTGPGM--SQNIEASLLLDNNT 145 (358)
T ss_dssp ---CBCCEEEEEEETTEEEEEEESCCBSTTTT--TTSBEEEEEECHHH
T ss_pred ---ecchhhhcccCCCceEEEEecCCcccccc--ccceeEEEEEcCCC
Confidence 679998775 56789999999999999 59999999998754
No 111
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=69.08 E-value=33 Score=33.74 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=26.7
Q ss_pred ceeEEEEeCce-EEEEEecChhhHHHHHHHHHhhc
Q 001225 315 RYAFQVSCGNR-SIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 315 ~~~~~i~~~~r-~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.|.|.|.-.++ ..+|.+.+..++..|+..|+.-.
T Consensus 95 ~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~ 129 (136)
T 1v5m_A 95 DNTFVLKVENGAEYILETIDSLQKHSWVADIQGCV 129 (136)
T ss_dssp TTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhc
Confidence 46666664444 79999999999999999997643
No 112
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=64.99 E-value=32 Score=39.36 Aligned_cols=78 Identities=10% Similarity=0.194 Sum_probs=53.0
Q ss_pred CcceEEEEEecCeEEEEeCCCCCc--eeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecChh
Q 001225 258 KWHKVWAVLKPGFLVLLEDPYNTR--VLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSG 335 (1120)
Q Consensus 258 ~w~krW~vvkds~l~y~~d~~~~~--~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~ 335 (1120)
+++.||++|=+.+|+|.+...+++ ....+-++. +.+... ...+..++|.|.+..+.+.|.+.|..
T Consensus 257 ~~~~r~~fLF~d~Ll~~k~~~~~~y~~k~~i~L~~-----------l~v~~~--~~~~~~~~f~i~~~~~~~~l~a~s~~ 323 (434)
T 3mpx_A 257 NRRPRHLFLMNDVLLYTYPQKDGKYRLKNTLAVAN-----------MKVSRP--VMEKVPYALKIETSESCLMLSASSCA 323 (434)
T ss_dssp EEEEEEEEEESSEEEEEEECTTSCEEEEEEEEC----------------CCC--CCTTSCSEEEEECSSCEEEEECSSHH
T ss_pred CceEEEEEEECCEEEEEEecCCCeEEEEEEEEcCC-----------cEEEec--CCCCCCeeEEEecCCeEEEEecCCHH
Confidence 456789999999999998333332 222222221 111110 11235789999999999999999999
Q ss_pred hHHHHHHHHHhhc
Q 001225 336 KVKEWVAAINDAG 348 (1120)
Q Consensus 336 ~~~~w~~~i~~~~ 348 (1120)
.-..|+..|.++.
T Consensus 324 ek~~W~~~i~~ai 336 (434)
T 3mpx_A 324 ERDEWYGCLSRAL 336 (434)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999976
No 113
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=57.72 E-value=78 Score=29.78 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=54.4
Q ss_pred ceEEEEEecCeEEEEeCCC---CCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCceEEEEEecChhh
Q 001225 260 HKVWAVLKPGFLVLLEDPY---NTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGNRSIKLRTTNSGK 336 (1120)
Q Consensus 260 ~krW~vvkds~l~y~~d~~---~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~ 336 (1120)
++++|++=+..|+|.. +. .++...+-.++-. ++.+-+ +++....++.|+|..+.++..+.|.+...
T Consensus 26 ~~v~~FLfND~Ll~a~-~~~~~~~~~~~~~~~~L~---------~~~v~d-~~d~~~~~n~f~i~~~~~s~~~~aes~~e 94 (113)
T 1zc3_B 26 QRVHGFLMNDCLLVAT-WLPQRRGMYRYNALYPLD---------RLAVVN-VKDNPPMKDMFKLLMFPESRIFQAENAKI 94 (113)
T ss_dssp EEEEEEEESSEEEEEE-EECCTTSCEEEEEEEETT---------TCEEEE-ECCBTTBSSEEEEEETTEEEEEECSSHHH
T ss_pred ccEEEEecCCEEEEEE-EeccCcccEEEEEEEEcc---------cCEEEE-CCCCcccceEEEEEeCCceEEEEcCCHHH
Confidence 3578888888999986 52 2333444444431 222221 12233578999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 001225 337 VKEWVAAINDAG 348 (1120)
Q Consensus 337 ~~~w~~~i~~~~ 348 (1120)
-.+|+.+|+++.
T Consensus 95 K~~Wl~~~~~a~ 106 (113)
T 1zc3_B 95 KREWLEVLEETK 106 (113)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 114
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=57.41 E-value=26 Score=37.27 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=30.6
Q ss_pred cceeEEEEeCceEEEEEecChhhHHHHHHHHHhh
Q 001225 314 LRYAFQVSCGNRSIKLRTTNSGKVKEWVAAINDA 347 (1120)
Q Consensus 314 ~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~ 347 (1120)
..+.+.|-+....++|-|.+...+..|-..|...
T Consensus 78 ~s~TlAIIc~d~~~vLAFds~e~l~~W~~~l~~s 111 (224)
T 3ml4_A 78 LAHTLAIICLSQAVMLGFDSHEAMCAWDTRIRYA 111 (224)
T ss_dssp EEEEEEEEESSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccEEEEEecCcEEEEEeCCHHHHHHHHHHHhhc
Confidence 4688999999999999999999999999988864
No 115
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=52.61 E-value=25 Score=34.47 Aligned_cols=80 Identities=14% Similarity=0.253 Sum_probs=52.1
Q ss_pred ceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCc-eEEEEEecChhhHH
Q 001225 260 HKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN-RSIKLRTTNSGKVK 338 (1120)
Q Consensus 260 ~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~ 338 (1120)
+.|+|++=++.|+|++ +....-.+++ --..| +. .+.+-+ ..+..+.+|.|.|.-.. +++.+-|.|..+..
T Consensus 45 ~eR~l~LF~~~Ll~~s-~~~~~~~f~~-kgklP-L~-----g~~V~~-~ed~~~~~~aFeI~g~~~~~i~v~~~s~eE~~ 115 (132)
T 1v61_A 45 EERYFLLFSSVLIMLS-ASPRMSGFMY-QGKIP-IA-----GMVVNR-LDEIEGSDCMFEITGSTVERIVVHCNNNQDFQ 115 (132)
T ss_dssp CEEEEEECSSCEEEEE-CSSSSSCCEE-EEEEC-TT-----TCBCST-TCSSSSSCCCEEEECSSSCEEEECCCCSHHHH
T ss_pred eEEEEEEcCCeEEEEE-ecCCCceEEE-EEEEe-cc-----eeEEEe-ccccccCccEEEEecCCCceEEEEeCCHHHHH
Confidence 5799999999999997 4332111111 01101 00 111111 01123578999999776 89999999999999
Q ss_pred HHHHHHHhhc
Q 001225 339 EWVAAINDAG 348 (1120)
Q Consensus 339 ~w~~~i~~~~ 348 (1120)
+|+..|..+.
T Consensus 116 ~Wl~~L~~~i 125 (132)
T 1v61_A 116 EWMEQLNRLT 125 (132)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 116
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=51.82 E-value=21 Score=38.25 Aligned_cols=52 Identities=13% Similarity=0.101 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHhCCCeEEEEEecCC
Q 001225 781 EGSIHSAYCSLIESAEHFIYIENQFFISGLSGDETIQNRILEALYRRIMRAYKEQKYFRVIVVLPLI 847 (1120)
Q Consensus 781 E~sI~~ayl~aI~~A~h~IYIEnQyFis~~~~~~~v~n~I~~AL~~Ri~rA~~~~~gv~V~IVlP~~ 847 (1120)
...|.+-..++|++|++.|++. ++. .....|.++|.+ | .++||.|+|++...
T Consensus 8 ~e~Ii~r~~e~I~~A~~el~ls----i~~-----e~l~~l~~~L~~----A--~~rGV~V~liv~~~ 59 (233)
T 2f5t_X 8 FDEAIEMFRESLYSAKNEVIVV----TPS-----EFFETIREDLIK----T--LERGVTVSLYIDKI 59 (233)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEE----ECG-----GGHHHHHHHHHH----H--HHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHHhhhEEEEE----eCH-----HHHHHHHHHHHH----H--HHCCCEEEEEEcCC
Confidence 4578888999999999999993 332 122345555554 3 35799999999743
No 117
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=47.14 E-value=1.2e+02 Score=37.79 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=53.7
Q ss_pred ceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCc--------eEEEEEe
Q 001225 260 HKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN--------RSIKLRT 331 (1120)
Q Consensus 260 ~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------r~l~l~~ 331 (1120)
+.-|||+.-.-|.+++|.+...-..++-.|..- +.+.-+.--..++.|.|.+.. +.|-|-|
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 627 (772)
T 3zvr_A 559 KEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLK-----------LRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELAC 627 (772)
T ss_dssp CEEEEEEESSEEEEESSTTCCCEEEEEECTTEE-----------EEEC-------CEEEEEEETTSSCSBTTBSEEEEEE
T ss_pred ccceeeccccccccccchhhhcccccccccccc-----------cchhhhccccccccccccCCccccccchhhhhhhhc
Confidence 456999999999999886666666666666421 111000001235778888775 3699999
Q ss_pred cChhhHHHHHHHHHhhc
Q 001225 332 TNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 332 ~s~~~~~~w~~~i~~~~ 348 (1120)
.+......|.++...++
T Consensus 628 ~~~~~~~~~~~~~~~~~ 644 (772)
T 3zvr_A 628 ETQEEVDSWKASFLRAG 644 (772)
T ss_dssp SSHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHhhhhcc
Confidence 99999999999998877
No 118
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=38.92 E-value=1.5e+02 Score=29.38 Aligned_cols=76 Identities=11% Similarity=0.124 Sum_probs=49.3
Q ss_pred cceEEEEEecCeEEEEeCCCCC-------ceeEEEEEecCCCCCCCCCCCeeecccccCCCCcceeEEEEeCc------e
Q 001225 259 WHKVWAVLKPGFLVLLEDPYNT-------RVLDIIVFELLPTTNGKEGPGVYLASQVKGSNPLRYAFQVSCGN------R 325 (1120)
Q Consensus 259 w~krW~vvkds~l~y~~d~~~~-------~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------r 325 (1120)
-+.|.|.+=+..|+|.+ |... +++..+-++ .+.+... +.....|||.|.+.. +
T Consensus 33 ~qqR~~FLFND~LL~TK-~~~kkk~~~~Y~vr~~~~L~-----------gm~V~~~--e~e~~p~~~~l~s~~~G~~~k~ 98 (140)
T 3qwm_A 33 LHQREIFLFNDLLVVTK-IFQKKKNSVTYSFRQSFSLY-----------GMQVLLF--ENQYYPNGIRLTSSVPGADIKV 98 (140)
T ss_dssp TTEEEEEEESSCEEEEE-CCC---CCCCCCCEEEECCT-----------TEEEEEE--CCSSCTTEEEEEECCTTSCCEE
T ss_pred ccceEEEEecchhhhee-ecccCCCCCceEEEEEeeec-----------ceEEEcc--cCCCCceEEEEEecCCCCcceE
Confidence 35789999999999996 3221 122222111 1122111 223468999999743 6
Q ss_pred EEEEEecChhhHHHHHHHHHhhc
Q 001225 326 SIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 326 ~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+.+.+.+.....+|+..|.++.
T Consensus 99 ~i~~~A~s~~ER~rwi~dL~esI 121 (140)
T 3qwm_A 99 LINFNAPNPQDRKKFTDDLRESI 121 (140)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHH
Confidence 79999999999999998887753
No 119
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=32.57 E-value=1.5e+02 Score=30.28 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=47.8
Q ss_pred CcceEEEEEecCeEEEEeCCCCCceeEEEEEecCCCCCCCCCCCeeeccc-ccCCCCcceeEEEEe----CceEEEEEec
Q 001225 258 KWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLPTTNGKEGPGVYLASQ-VKGSNPLRYAFQVSC----GNRSIKLRTT 332 (1120)
Q Consensus 258 ~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~----~~r~l~l~~~ 332 (1120)
+|..++++|=+.+|+|+. +.+.+- +| .+... + ..-+.+..- +.+...-..+|.+.+ |.+.+.|.|.
T Consensus 85 ~~~d~~~fLf~D~Ll~~~-~~~~ky--~~-~~~~~----~-~pvi~L~~~~vre~a~d~~~~fli~~~~~g~~~yel~a~ 155 (185)
T 2lg1_A 85 RLKEVQAVLLTDILVFLQ-EKDQKY--IF-ASLDQ----K-STVISLKKLIVREVAHEEKGLFLISMGMTDPEMVEVHAS 155 (185)
T ss_dssp CEEEEEEEEESSEEECCE-EETTEE--EC-CCCSS----S-CSEEESSSCEEECCSSCSSEEEEECCSSSCCCCEEEECS
T ss_pred CeeeEEEEeecCEEEEEE-ecCCEE--EE-EcccC----C-CCeEeecceEEeccCCCCCeEEEEEecCCCCeEEEEEcC
Confidence 567899999999999996 433321 11 11100 0 011111100 011111234666654 3578999999
Q ss_pred ChhhHHHHHHHHHhhc
Q 001225 333 NSGKVKEWVAAINDAG 348 (1120)
Q Consensus 333 s~~~~~~w~~~i~~~~ 348 (1120)
|...-..|+..|..+.
T Consensus 156 s~~er~~W~~~I~~Ai 171 (185)
T 2lg1_A 156 SKEERNSWIQIIQDTI 171 (185)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998865
No 120
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=31.06 E-value=25 Score=42.22 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=28.3
Q ss_pred cCCeEEEEcCCCCCcccccccCcceEEEE---eC-CeEEEccccCCCCCc
Q 001225 467 HENVKVLRHPDHVSTGVYLWSHHEKLVIV---DY-RISFIGGLDLCFGRY 512 (1120)
Q Consensus 467 ~~nI~V~r~P~~~~~~~~~~rhH~KivVI---D~-~vAFvGGinL~~GRw 512 (1120)
.+||.+..-|- + . +.+||-||+|. |+ -...|-..||...-|
T Consensus 165 ~~nv~l~~p~m--p--~-fGthHSKmmlL~y~dg~lRVVI~TANLi~~DW 209 (544)
T 1q32_A 165 LKKVKLIEITM--P--P-FASHHTKLIINFYDNGECKIFLPSNNFTSMET 209 (544)
T ss_dssp HTTEEEEEECC--C--T-TCCBCCCEEEEEESTTEEEEEEESSCBSHHHH
T ss_pred CCCeEEEeCCC--C--C-CCCCCceeEEEEecCCCEEEEEeCCCCChHHh
Confidence 58999864442 1 2 67999999998 55 556677888864333
No 121
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=30.91 E-value=1.9e+02 Score=32.66 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=51.6
Q ss_pred CcceEEEEEecCeEEEEeCCCCCceeEEEEEecCC----CCCCC--CCCCeeeccc-ccCCCCcceeEEEEeCc-----e
Q 001225 258 KWHKVWAVLKPGFLVLLEDPYNTRVLDIIVFELLP----TTNGK--EGPGVYLASQ-VKGSNPLRYAFQVSCGN-----R 325 (1120)
Q Consensus 258 ~w~krW~vvkds~l~y~~d~~~~~~~~v~l~D~~~----~~~~~--~~~~~~~~~~-~~~~~~~~~~~~i~~~~-----r 325 (1120)
+++.+|++|=+.+|+|++. .+++- ++ .+... ..+.+ ....+.+..- +.+..+...+|.|.+.. +
T Consensus 309 ~~~~~~~fLF~d~Ll~~k~-~~~k~--~~-~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~~~~~~f~l~~~~~~~~~~ 384 (418)
T 3t06_A 309 KTLDLHVLLLEDLLVLLQK-QDEKL--LL-KCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATDKRAFFIICTSKLGPPQ 384 (418)
T ss_dssp BCCEEEEEEESSEEEEEEE-CSSCE--EC-CC-------------CCCSEEEGGGEEEEECSSCSSEEEEEECCSSSTTC
T ss_pred CeEEEEEEecCCEEEEEEE-cCCce--EE-eecccccccCCCcccccCCceechhceeccccccCceEEEEecCCCCCce
Confidence 5678999999999999984 33221 11 00000 00000 0112222211 11122345578777643 7
Q ss_pred EEEEEecChhhHHHHHHHHHhhcCC
Q 001225 326 SIKLRTTNSGKVKEWVAAINDAGLR 350 (1120)
Q Consensus 326 ~l~l~~~s~~~~~~w~~~i~~~~~~ 350 (1120)
.+.|.|.|...-..|+..|.++...
T Consensus 385 ~~~l~A~s~~ek~~W~~~I~~a~~~ 409 (418)
T 3t06_A 385 IYELVALTSSDKNTWMELLEEAVRN 409 (418)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999987643
No 122
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=26.44 E-value=3.5e+02 Score=32.25 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=50.4
Q ss_pred CCcceEEEEEecCeEEEEeCCCCCc--eeEEEEEecCCCCCCCCCCCeeecccc---cCCCCcceeEEEEeCc--eEEEE
Q 001225 257 NKWHKVWAVLKPGFLVLLEDPYNTR--VLDIIVFELLPTTNGKEGPGVYLASQV---KGSNPLRYAFQVSCGN--RSIKL 329 (1120)
Q Consensus 257 ~~w~krW~vvkds~l~y~~d~~~~~--~~~v~l~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~--r~l~l 329 (1120)
.+++.|+++|=+.+|+|.+ +.+.+ ...++-++ .+.+.... .......++|.|.... +++.|
T Consensus 420 ~~~~~r~~fLF~d~Ll~~k-~~~~~y~~k~~i~L~-----------~~~v~~~~~~~~~~~~~~~~f~i~~~~~~~~~~L 487 (587)
T 3ky9_A 420 RSKMDRYAFLLDKALLICK-RRGDSYDLKDFVNLH-----------SFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYEL 487 (587)
T ss_dssp CSCEEEEEEEETTEEEEEE-EETTEEEEEEEEEGG-----------GEEEEEC-----CCCTTCEEEEEEETTC---CEE
T ss_pred CCcceEEEEEECCEEEEEE-ecCCEEEeeeeechh-----------hceeeecCCCCcccccccceeEEEEcCCCceEEE
Confidence 3567889999999999997 43332 22222111 11111000 0112356899999865 78999
Q ss_pred EecChhhHHHHHHHHHhhc
Q 001225 330 RTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 330 ~~~s~~~~~~w~~~i~~~~ 348 (1120)
.|.|...-..|+..|..+.
T Consensus 488 ~A~S~eeK~~Wi~~I~~ai 506 (587)
T 3ky9_A 488 FFKTRELKKKWMEQFEMAI 506 (587)
T ss_dssp EESSHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHh
Confidence 9999999999999888765
No 123
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=24.23 E-value=6.3e+02 Score=28.25 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=58.8
Q ss_pred cCCcceeeEEEEEeccCCCCCCCCCcccccccccccCCcceEEEEEecCeEEEEeCCCCCc--eeEEEEEecCCCCCCCC
Q 001225 221 YGPKLKEGYVMVKHLSNISKTDDAIHCTGCCFSCCSNKWHKVWAVLKPGFLVLLEDPYNTR--VLDIIVFELLPTTNGKE 298 (1120)
Q Consensus 221 ~G~KgkEG~l~kr~~~~~~~~~~~~~~~~~~~~~~~~~w~krW~vvkds~l~y~~d~~~~~--~~~v~l~D~~~~~~~~~ 298 (1120)
.|.--+||.+.+.... ..+++.+++++=+.+|++.+ +.+.+ ....+-++
T Consensus 231 ~grli~~G~l~~~~~~-------------------~~~~~~~~~fLF~d~Ll~~k-~k~~~y~~k~~i~l~--------- 281 (406)
T 2vrw_B 231 YGRPKIDGELKITSVE-------------------RRSKTDRYAFLLDKALLICK-RRGDSYDLKASVNLH--------- 281 (406)
T ss_dssp GCSEEEEEEEEEECSS-------------------CCSCEEEEEEEESSEEEEEE-EETTEEEEEEEEETT---------
T ss_pred cCcccccccEEEEecC-------------------CCccceEEEEecCCEEEEEE-ecCCceEEEEEeccc---------
Confidence 4555678888765310 02356789999999999997 43322 11111111
Q ss_pred CCCeeeccc---ccCCCCcceeEEEEe--CceEEEEEecChhhHHHHHHHHHhhc
Q 001225 299 GPGVYLASQ---VKGSNPLRYAFQVSC--GNRSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 299 ~~~~~~~~~---~~~~~~~~~~~~i~~--~~r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
.+.+... .+......++|.|.. +.+.+.+.|.|...-..|+.+|..+.
T Consensus 282 --~~~v~~~~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 334 (406)
T 2vrw_B 282 --SFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAI 334 (406)
T ss_dssp --TEEEEC--------CTTCEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --ceeeeecCCCCccCCccceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHH
Confidence 1111100 000112458899886 46789999999999999999988764
No 124
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=21.55 E-value=1.8e+02 Score=27.80 Aligned_cols=35 Identities=11% Similarity=0.317 Sum_probs=30.6
Q ss_pred cceeEEEEeCc--eEEEEEecChhhHHHHHHHHHhhc
Q 001225 314 LRYAFQVSCGN--RSIKLRTTNSGKVKEWVAAINDAG 348 (1120)
Q Consensus 314 ~~~~~~i~~~~--r~l~l~~~s~~~~~~w~~~i~~~~ 348 (1120)
....|.|..++ ++|-|.|.|...+..|+..|....
T Consensus 84 ~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~ 120 (131)
T 1mai_A 84 EDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKII 120 (131)
T ss_dssp GGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 45678888887 599999999999999999998875
Done!