Query 001226
Match_columns 1119
No_of_seqs 1121 out of 7277
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 17:24:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.5E-93 8.5E-98 903.7 51.1 704 22-767 9-750 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.8E-76 1.3E-80 746.4 42.9 631 95-756 49-714 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2E-62 6.9E-67 615.5 48.5 588 74-739 9-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-62 8E-67 614.9 42.0 591 99-761 7-624 (680)
5 3t6q_A CD180 antigen; protein- 100.0 8.2E-58 2.8E-62 565.8 35.8 534 73-666 16-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 4.8E-57 1.6E-61 559.0 39.5 540 99-715 15-564 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-55 5.3E-60 563.6 40.8 488 73-639 8-518 (844)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-55 7.6E-60 544.0 37.5 537 73-666 15-562 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-55 4.6E-60 546.0 34.8 539 99-691 14-562 (606)
10 4eco_A Uncharacterized protein 100.0 1E-55 3.4E-60 546.6 24.5 517 25-614 30-600 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-53 4E-58 546.3 42.5 531 57-665 14-563 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 5.6E-54 1.9E-58 538.0 32.9 526 24-638 268-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 1.1E-50 3.8E-55 498.4 32.5 513 74-667 12-536 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 2.3E-50 7.8E-55 495.6 33.6 499 230-741 21-537 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-50 8E-55 492.9 28.9 494 56-666 3-514 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-49 1.8E-53 480.9 29.4 471 239-740 26-515 (549)
17 4eco_A Uncharacterized protein 100.0 2.2E-50 7.6E-55 498.7 17.3 450 265-736 82-601 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-47 8.8E-52 474.9 40.0 553 43-663 12-581 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 8.2E-49 2.8E-53 475.7 25.4 454 268-740 4-486 (520)
20 4aoj_A High affinity nerve gro 100.0 1.3E-48 4.4E-53 437.8 17.8 259 835-1114 42-322 (329)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-47 4.8E-52 464.8 27.8 439 239-715 21-485 (520)
22 4asz_A BDNF/NT-3 growth factor 100.0 4.8E-49 1.6E-53 435.1 13.5 259 835-1114 14-292 (299)
23 4gt4_A Tyrosine-protein kinase 100.0 1.2E-48 4E-53 433.9 15.8 253 837-1110 29-305 (308)
24 3omv_A RAF proto-oncogene seri 100.0 2.4E-48 8.1E-53 429.1 16.2 257 836-1114 38-303 (307)
25 4g3f_A NF-kappa-beta-inducing 100.0 4.4E-48 1.5E-52 430.9 16.4 256 834-1112 58-317 (336)
26 4fih_A Serine/threonine-protei 100.0 7E-48 2.4E-52 430.4 17.6 246 835-1105 75-324 (346)
27 4ecn_A Leucine-rich repeat pro 100.0 4.4E-47 1.5E-51 475.6 26.3 438 264-734 323-863 (876)
28 4aw0_A HPDK1, 3-phosphoinositi 100.0 3.1E-48 1E-52 426.7 11.8 245 834-1103 32-283 (311)
29 3hmm_A TGF-beta receptor type- 100.0 1.2E-47 4.2E-52 427.3 15.9 276 835-1117 4-303 (303)
30 4b9d_A Serine/threonine-protei 100.0 2.6E-48 8.9E-53 434.6 9.3 250 832-1105 22-277 (350)
31 4g8a_A TOLL-like receptor 4; l 100.0 4.1E-45 1.4E-49 455.1 38.0 443 260-737 120-582 (635)
32 3fpq_A Serine/threonine-protei 100.0 3.5E-47 1.2E-51 416.7 14.9 240 839-1105 31-283 (290)
33 4fie_A Serine/threonine-protei 100.0 8.5E-47 2.9E-51 432.0 18.1 246 835-1105 152-401 (423)
34 3hyh_A Carbon catabolite-derep 100.0 6.1E-47 2.1E-51 411.0 15.3 244 833-1105 12-263 (275)
35 4ase_A Vascular endothelial gr 100.0 4.7E-47 1.6E-51 428.5 12.7 260 835-1114 65-350 (353)
36 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-45 7.2E-50 449.5 24.5 453 267-740 34-515 (562)
37 3ubd_A Ribosomal protein S6 ki 100.0 1.5E-46 5.1E-51 413.7 11.0 245 834-1105 24-282 (304)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-44 1E-48 439.3 28.6 439 239-716 52-515 (562)
39 4g31_A Eukaryotic translation 100.0 4E-45 1.4E-49 404.6 17.3 250 833-1105 4-280 (299)
40 1jl5_A Outer protein YOPM; leu 100.0 2.4E-42 8.3E-47 408.0 25.4 199 119-373 10-208 (454)
41 1jl5_A Outer protein YOPM; leu 100.0 5.4E-42 1.8E-46 405.1 27.0 425 239-745 11-439 (454)
42 4b99_A Mitogen-activated prote 100.0 2E-42 6.9E-47 397.7 19.9 262 835-1105 55-345 (398)
43 3v47_A TOLL-like receptor 5B a 100.0 3.7E-41 1.3E-45 401.3 26.6 367 264-666 30-412 (455)
44 3v47_A TOLL-like receptor 5B a 100.0 3.6E-41 1.2E-45 401.4 26.5 381 292-740 14-413 (455)
45 4f9c_A Cell division cycle 7-r 100.0 5.6E-42 1.9E-46 390.0 16.8 195 835-1038 22-250 (361)
46 3v5w_A G-protein coupled recep 100.0 6.9E-42 2.4E-46 407.9 15.2 245 835-1105 190-450 (689)
47 3uto_A Twitchin; kinase, muscl 100.0 2.7E-41 9.3E-46 408.0 15.2 249 834-1105 157-411 (573)
48 1ogq_A PGIP-2, polygalacturona 100.0 4E-40 1.4E-44 370.6 18.8 178 21-205 2-187 (313)
49 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-39 1.2E-43 381.3 27.8 215 230-471 33-247 (457)
50 3bz5_A Internalin-J, INLJ; leu 100.0 5E-39 1.7E-43 380.0 27.4 359 259-719 37-395 (457)
51 2qkw_B Protein kinase; three-h 100.0 3.5E-39 1.2E-43 365.1 22.3 273 835-1114 40-318 (321)
52 3s95_A LIMK-1, LIM domain kina 100.0 3E-39 1E-43 363.8 17.9 258 834-1112 10-283 (310)
53 3fxz_A Serine/threonine-protei 100.0 3.6E-39 1.2E-43 360.4 17.8 247 834-1105 20-270 (297)
54 1o6v_A Internalin A; bacterial 100.0 7.7E-38 2.6E-42 373.1 30.1 345 263-663 45-389 (466)
55 3zgw_A Maternal embryonic leuc 100.0 2.2E-39 7.6E-44 368.3 15.3 246 834-1105 10-261 (347)
56 2psq_A Fibroblast growth facto 100.0 8E-39 2.7E-43 368.7 19.7 258 834-1112 81-365 (370)
57 3soc_A Activin receptor type-2 100.0 2.3E-39 7.8E-44 366.6 14.8 271 834-1113 24-320 (322)
58 3uim_A Brassinosteroid insensi 100.0 7.7E-39 2.6E-43 363.3 18.8 280 826-1110 18-310 (326)
59 3fe3_A MAP/microtubule affinit 100.0 3.6E-39 1.2E-43 364.7 15.6 243 835-1105 16-265 (328)
60 2nru_A Interleukin-1 receptor- 100.0 5.2E-38 1.8E-42 353.2 24.6 276 826-1111 13-306 (307)
61 4euu_A Serine/threonine-protei 100.0 2.2E-38 7.5E-43 358.3 21.3 269 835-1109 10-307 (319)
62 2yab_A Death-associated protei 100.0 1.3E-38 4.3E-43 364.5 17.9 247 835-1105 13-273 (361)
63 3cbl_A C-FES, proto-oncogene t 100.0 2.5E-39 8.7E-44 374.3 12.0 256 834-1112 114-375 (377)
64 1o6v_A Internalin A; bacterial 100.0 6.5E-37 2.2E-41 365.0 32.7 347 236-639 43-389 (466)
65 3p86_A Serine/threonine-protei 100.0 1.2E-38 4E-43 358.1 16.1 256 835-1114 38-301 (309)
66 3tki_A Serine/threonine-protei 100.0 7E-39 2.4E-43 362.3 14.3 250 834-1105 7-262 (323)
67 4eqm_A Protein kinase; transfe 100.0 5.7E-38 2E-42 350.2 20.4 259 835-1114 12-278 (294)
68 1tki_A Titin; serine kinase, m 100.0 1.1E-38 3.9E-43 360.1 14.8 248 835-1105 6-258 (321)
69 3kul_A Ephrin type-A receptor 100.0 1.5E-38 5.2E-43 360.0 15.2 259 834-1115 49-317 (325)
70 2y0a_A Death-associated protei 100.0 3.3E-38 1.1E-42 357.4 18.0 248 834-1105 11-272 (326)
71 1o6l_A RAC-beta serine/threoni 100.0 4.2E-38 1.4E-42 356.8 18.3 245 834-1105 5-261 (337)
72 3h4j_B AMPK kdaid, SNF1-like p 100.0 3.2E-38 1.1E-42 357.3 17.1 243 834-1105 9-259 (336)
73 2c30_A Serine/threonine-protei 100.0 1E-37 3.5E-42 352.5 20.7 244 837-1105 48-295 (321)
74 1csn_A Casein kinase-1; phosph 100.0 1.5E-37 5.2E-42 347.9 21.5 265 835-1116 11-288 (298)
75 3c0i_A Peripheral plasma membr 100.0 2.9E-38 9.9E-43 361.7 15.9 251 834-1105 24-287 (351)
76 3sxs_A Cytoplasmic tyrosine-pr 100.0 3.2E-38 1.1E-42 347.5 15.5 256 834-1114 8-267 (268)
77 3soa_A Calcium/calmodulin-depe 100.0 7.7E-38 2.6E-42 367.4 19.3 249 834-1105 11-268 (444)
78 2bdw_A Hypothetical protein K1 100.0 5.8E-38 2E-42 360.2 17.9 248 834-1105 29-285 (362)
79 2izr_A Casein kinase I isoform 100.0 1.3E-37 4.6E-42 353.6 20.1 261 835-1114 10-284 (330)
80 4hcu_A Tyrosine-protein kinase 100.0 2.9E-38 1E-42 348.0 14.2 254 834-1112 10-267 (269)
81 1luf_A Muscle-specific tyrosin 100.0 2.8E-38 9.6E-43 361.5 14.5 262 835-1117 48-341 (343)
82 3vhe_A Vascular endothelial gr 100.0 2.3E-38 8E-43 364.6 13.8 259 834-1112 22-356 (359)
83 3ugc_A Tyrosine-protein kinase 100.0 6.1E-39 2.1E-43 358.6 8.4 273 834-1113 10-293 (295)
84 2qol_A Ephrin receptor; recept 100.0 5.5E-38 1.9E-42 361.9 16.4 256 834-1112 45-310 (373)
85 3q4u_A Activin receptor type-1 100.0 1E-37 3.5E-42 349.8 18.1 260 835-1110 9-301 (301)
86 4dc2_A Protein kinase C IOTA t 100.0 1.8E-37 6.3E-42 357.8 20.5 255 833-1105 51-319 (396)
87 2ivs_A Proto-oncogene tyrosine 100.0 6.4E-38 2.2E-42 353.8 16.2 258 834-1112 23-312 (314)
88 3qd2_B Eukaryotic translation 100.0 9.3E-38 3.2E-42 355.4 17.6 250 833-1105 5-326 (332)
89 3l9p_A Anaplastic lymphoma kin 100.0 1.8E-38 6E-43 365.7 11.6 259 834-1113 71-347 (367)
90 1fot_A TPK1 delta, CAMP-depend 100.0 8.4E-38 2.9E-42 351.8 16.9 242 834-1105 6-259 (318)
91 4eut_A Serine/threonine-protei 100.0 6.9E-38 2.4E-42 364.8 16.7 272 835-1112 10-310 (396)
92 4fr4_A YANK1, serine/threonine 100.0 9.4E-38 3.2E-42 359.1 17.1 246 834-1104 15-271 (384)
93 3poz_A Epidermal growth factor 100.0 5E-38 1.7E-42 356.4 14.5 255 834-1112 15-279 (327)
94 3v8s_A RHO-associated protein 100.0 4.1E-38 1.4E-42 365.4 13.8 248 835-1105 70-330 (410)
95 3kex_A Receptor tyrosine-prote 100.0 1.3E-37 4.3E-42 352.9 16.8 253 835-1111 14-276 (325)
96 3tt0_A Basic fibroblast growth 100.0 1.6E-37 5.5E-42 360.1 18.0 260 834-1114 69-355 (382)
97 1rjb_A FL cytokine receptor; k 100.0 9.2E-38 3.2E-42 357.3 15.7 263 834-1116 45-339 (344)
98 3txo_A PKC-L, NPKC-ETA, protei 100.0 3.2E-38 1.1E-42 360.3 11.6 246 833-1105 22-281 (353)
99 2zv2_A Calcium/calmodulin-depe 100.0 1.2E-37 4E-42 348.7 16.0 246 834-1105 13-293 (298)
100 3kn6_A Ribosomal protein S6 ki 100.0 8E-38 2.7E-42 353.9 14.7 251 839-1105 16-271 (325)
101 2qr7_A Ribosomal protein S6 ki 100.0 5.6E-38 1.9E-42 357.1 13.5 252 834-1105 22-278 (342)
102 1opk_A P150, C-ABL, proto-onco 100.0 8.1E-38 2.8E-42 374.2 15.6 256 835-1113 221-480 (495)
103 3o0g_A Cell division protein k 100.0 1.4E-37 4.7E-42 347.0 16.2 263 835-1105 3-283 (292)
104 3lb7_A RAF proto-oncogene seri 100.0 3.3E-37 1.1E-41 346.1 19.3 260 834-1115 36-304 (307)
105 1rdq_E PKA C-alpha, CAMP-depen 100.0 1.5E-37 5.1E-42 354.6 16.5 243 833-1105 40-294 (350)
106 1t46_A HOMO sapiens V-KIT hard 100.0 1E-37 3.5E-42 351.9 14.9 262 834-1115 23-311 (313)
107 1qcf_A Haematopoetic cell kina 100.0 6.7E-38 2.3E-42 371.5 13.7 259 835-1118 189-451 (454)
108 2w4o_A Calcium/calmodulin-depe 100.0 1.4E-37 4.6E-42 355.6 15.4 248 835-1105 54-306 (349)
109 1xjd_A Protein kinase C, theta 100.0 7.5E-38 2.5E-42 355.8 13.2 244 834-1104 17-269 (345)
110 4f0f_A Serine/threonine-protei 100.0 5.6E-37 1.9E-41 341.2 20.0 249 834-1109 19-287 (287)
111 2yex_A Serine/threonine-protei 100.0 2.5E-37 8.6E-42 341.9 17.0 252 832-1105 5-262 (276)
112 3gen_A Tyrosine-protein kinase 100.0 9.4E-38 3.2E-42 346.7 13.5 255 834-1113 24-282 (283)
113 3a8x_A Protein kinase C IOTA t 100.0 5.3E-37 1.8E-41 349.5 20.0 254 834-1105 9-276 (345)
114 3niz_A Rhodanese family protei 100.0 2.6E-37 8.9E-42 347.7 17.2 262 834-1105 21-301 (311)
115 2eva_A TAK1 kinase - TAB1 chim 100.0 1.5E-37 5.2E-42 349.0 15.1 256 834-1114 8-266 (307)
116 1kob_A Twitchin; kinase, intra 100.0 1.8E-37 6.2E-42 358.1 16.0 249 834-1105 51-305 (387)
117 3uc3_A Serine/threonine-protei 100.0 1.7E-37 5.8E-42 356.4 15.5 250 834-1105 20-275 (361)
118 3dls_A PAS domain-containing s 100.0 2.2E-37 7.4E-42 351.8 16.2 238 834-1105 24-275 (335)
119 2x4f_A Myosin light chain kina 100.0 2.2E-37 7.5E-42 356.7 16.1 246 837-1105 92-343 (373)
120 4aw2_A Serine/threonine-protei 100.0 1.4E-37 4.9E-42 363.6 14.6 251 835-1105 75-339 (437)
121 3hko_A Calcium/calmodulin-depe 100.0 2.4E-37 8.1E-42 354.1 16.1 259 829-1105 20-331 (345)
122 3gxj_A TGF-beta receptor type- 100.0 1.5E-38 5E-43 357.0 5.8 267 835-1117 4-303 (303)
123 3mdy_A Bone morphogenetic prot 100.0 1.8E-36 6.3E-41 345.5 23.1 270 834-1116 37-336 (337)
124 2a2a_A Death-associated protei 100.0 4.6E-37 1.6E-41 347.7 17.9 248 834-1105 12-273 (321)
125 3qup_A Tyrosine-protein kinase 100.0 1.4E-37 4.8E-42 352.4 13.6 259 834-1113 23-300 (323)
126 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 1.7E-37 5.7E-42 367.6 14.7 259 835-1118 185-447 (452)
127 1k9a_A Carboxyl-terminal SRC k 100.0 4.8E-37 1.7E-41 363.4 18.6 251 834-1113 193-447 (450)
128 3gni_B Strad alpha; kinase fol 100.0 5.8E-37 2E-41 356.7 18.9 274 834-1111 25-342 (389)
129 1nxk_A MAP kinase-activated pr 100.0 7E-37 2.4E-41 355.9 19.5 252 835-1105 62-322 (400)
130 2i0e_A Protein kinase C-beta I 100.0 2.8E-37 9.5E-42 352.2 15.6 245 834-1105 20-277 (353)
131 4hgt_A Casein kinase I isoform 100.0 1E-36 3.6E-41 340.7 20.0 265 834-1116 9-285 (296)
132 3kfa_A Tyrosine-protein kinase 100.0 1.8E-37 6E-42 345.5 13.7 256 834-1112 13-272 (288)
133 3cok_A Serine/threonine-protei 100.0 3.4E-37 1.2E-41 341.3 15.8 246 834-1105 11-263 (278)
134 2y94_A 5'-AMP-activated protei 100.0 3.8E-37 1.3E-41 363.7 16.8 244 834-1105 16-267 (476)
135 3g33_A Cell division protein k 100.0 2.1E-37 7.1E-42 348.5 13.9 264 834-1105 9-297 (308)
136 3kk8_A Calcium/calmodulin depe 100.0 5.4E-37 1.8E-41 340.8 16.9 247 835-1105 7-262 (284)
137 2a19_B Interferon-induced, dou 100.0 8.2E-37 2.8E-41 339.3 18.3 254 834-1117 11-280 (284)
138 3fdn_A Serine/threonine-protei 100.0 3.3E-37 1.1E-41 341.5 15.0 243 834-1105 9-258 (279)
139 1mp8_A Focal adhesion kinase 1 100.0 2.4E-37 8.2E-42 343.0 13.9 254 834-1112 15-277 (281)
140 3f3z_A Calcium/calmodulin-depe 100.0 7.2E-37 2.5E-41 338.5 17.4 247 834-1105 9-262 (277)
141 3op5_A Serine/threonine-protei 100.0 2E-37 6.9E-42 357.0 13.5 268 835-1116 36-334 (364)
142 2pvf_A Fibroblast growth facto 100.0 4.6E-37 1.6E-41 349.8 15.9 259 834-1113 35-320 (334)
143 1b6c_B TGF-B superfamily recep 100.0 1.1E-36 3.9E-41 348.0 19.1 268 834-1117 42-342 (342)
144 2h34_A Serine/threonine-protei 100.0 5.4E-37 1.8E-41 345.0 16.1 260 833-1115 33-300 (309)
145 2ac3_A MAP kinase-interacting 100.0 2.5E-37 8.5E-42 349.3 13.3 265 835-1105 13-296 (316)
146 3a62_A Ribosomal protein S6 ki 100.0 6.1E-37 2.1E-41 347.2 16.4 245 834-1105 17-277 (327)
147 3uzp_A CKI-delta, CKID, casein 100.0 2.1E-36 7.3E-41 338.2 20.6 264 835-1116 10-285 (296)
148 2id5_A Lingo-1, leucine rich r 100.0 6.6E-36 2.2E-40 358.0 26.1 320 267-614 14-333 (477)
149 2eue_A Carbon catabolite derep 100.0 3.2E-37 1.1E-41 340.8 13.7 242 835-1105 14-263 (275)
150 3g2f_A Bone morphogenetic prot 100.0 6.9E-37 2.4E-41 348.8 16.7 277 834-1116 13-323 (336)
151 3p1a_A MYT1 kinase, membrane-a 100.0 4.1E-36 1.4E-40 338.1 22.7 242 834-1105 57-305 (311)
152 1p4o_A Insulin-like growth fac 100.0 3.2E-37 1.1E-41 349.4 13.8 259 834-1113 25-301 (322)
153 3og7_A AKAP9-BRAF fusion prote 100.0 2.8E-37 9.6E-42 343.9 13.1 256 835-1112 25-289 (289)
154 3lzb_A Epidermal growth factor 100.0 3.3E-37 1.1E-41 349.4 13.8 254 835-1112 16-279 (327)
155 2pmi_A Negative RE, cyclin-dep 100.0 5.3E-37 1.8E-41 346.3 15.4 265 834-1105 5-294 (317)
156 1ob3_A PFPK5, cell division co 100.0 3.7E-37 1.3E-41 342.8 13.6 261 835-1105 3-281 (288)
157 2vd5_A DMPK protein; serine/th 100.0 4.5E-37 1.5E-41 356.9 14.8 250 835-1105 62-328 (412)
158 2id5_A Lingo-1, leucine rich r 100.0 5.7E-36 2E-40 358.5 24.7 322 242-592 14-335 (477)
159 3dtc_A Mitogen-activated prote 100.0 5E-37 1.7E-41 338.6 14.2 248 835-1109 8-271 (271)
160 3e7e_A HBUB1, BUB1A, mitotic c 100.0 6.3E-37 2.1E-41 353.2 15.6 253 835-1113 66-341 (365)
161 2xir_A Vascular endothelial gr 100.0 2.8E-37 9.5E-42 348.9 12.3 261 834-1114 27-313 (316)
162 3bhy_A Death-associated protei 100.0 1.1E-36 3.8E-41 338.1 16.7 256 834-1113 5-276 (283)
163 2acx_A G protein-coupled recep 100.0 6.3E-37 2.1E-41 366.0 15.7 249 835-1105 185-445 (576)
164 3is5_A Calcium-dependent prote 100.0 6.9E-37 2.3E-41 340.0 14.9 249 834-1105 22-279 (285)
165 4fvq_A Tyrosine-protein kinase 100.0 2.8E-37 9.5E-42 344.1 11.5 252 834-1115 8-279 (289)
166 3t9t_A Tyrosine-protein kinase 100.0 5.6E-37 1.9E-41 337.3 13.8 254 834-1112 8-265 (267)
167 3brb_A Proto-oncogene tyrosine 100.0 1.2E-36 4.1E-41 343.1 16.6 259 834-1113 34-310 (313)
168 3ork_A Serine/threonine protei 100.0 1.6E-37 5.4E-42 349.8 9.3 256 835-1111 13-281 (311)
169 2i1m_A Macrophage colony-stimu 100.0 2.4E-37 8.3E-42 352.1 10.9 258 835-1112 47-327 (333)
170 3ttj_A Mitogen-activated prote 100.0 1.8E-36 6.2E-41 358.9 18.6 259 834-1105 62-356 (464)
171 4e5w_A Tyrosine-protein kinase 100.0 1.4E-37 4.8E-42 348.9 8.6 268 835-1110 22-301 (302)
172 4ejn_A RAC-alpha serine/threon 100.0 4E-37 1.4E-41 364.4 12.9 245 834-1105 148-405 (446)
173 2r5t_A Serine/threonine-protei 100.0 5.4E-37 1.8E-41 352.3 13.6 240 834-1100 38-285 (373)
174 3pls_A Macrophage-stimulating 100.0 2E-36 7E-41 338.7 17.5 260 835-1116 22-292 (298)
175 3c1x_A Hepatocyte growth facto 100.0 6.5E-37 2.2E-41 352.5 13.7 258 836-1116 91-360 (373)
176 3cc6_A Protein tyrosine kinase 100.0 1.1E-36 3.8E-41 337.7 15.0 254 834-1112 12-274 (281)
177 3kmu_A ILK, integrin-linked ki 100.0 1.2E-36 4.2E-41 335.3 15.2 249 834-1112 10-271 (271)
178 2jii_A Serine/threonine-protei 100.0 7.2E-37 2.4E-41 350.8 13.7 269 834-1116 42-341 (352)
179 1mqb_A Ephrin type-A receptor 100.0 1.4E-36 5E-41 345.2 16.1 256 835-1113 45-311 (333)
180 4agu_A Cyclin-dependent kinase 100.0 5.4E-37 1.9E-41 345.6 12.5 261 835-1105 4-285 (311)
181 3mtl_A Cell division protein k 100.0 3.1E-37 1.1E-41 349.4 10.5 261 835-1105 3-282 (324)
182 3i6u_A CDS1, serine/threonine- 100.0 1.8E-36 6.3E-41 355.0 17.3 248 834-1105 135-400 (419)
183 3oz6_A Mitogen-activated prote 100.0 3.9E-37 1.3E-41 358.0 11.4 269 833-1110 8-336 (388)
184 3f66_A Hepatocyte growth facto 100.0 2.2E-36 7.6E-41 338.4 17.0 259 835-1116 26-296 (298)
185 2v62_A Serine/threonine-protei 100.0 1E-36 3.5E-41 348.4 14.5 264 835-1113 38-330 (345)
186 2wqm_A Serine/threonine-protei 100.0 1.4E-36 4.7E-41 342.2 15.0 265 830-1114 28-300 (310)
187 3llt_A Serine/threonine kinase 100.0 2.6E-36 8.9E-41 347.5 17.6 194 835-1038 36-262 (360)
188 3mwu_A Calmodulin-domain prote 100.0 2.9E-36 9.9E-41 361.1 18.5 247 834-1105 22-277 (486)
189 1qpc_A LCK kinase; alpha beta 100.0 1.1E-36 3.7E-41 337.4 13.8 259 834-1117 13-275 (279)
190 3rp9_A Mitogen-activated prote 100.0 1.8E-36 6.3E-41 360.3 16.6 191 834-1031 53-280 (458)
191 3c4z_A Rhodopsin kinase; Ser/T 100.0 2.3E-36 8E-41 360.6 17.4 251 835-1105 186-449 (543)
192 2h8h_A Proto-oncogene tyrosine 100.0 6.8E-37 2.3E-41 369.6 12.7 259 835-1118 268-530 (535)
193 2vgo_A Serine/threonine-protei 100.0 2.6E-36 8.8E-41 335.3 16.4 243 834-1105 14-263 (284)
194 3lxl_A Tyrosine-protein kinase 100.0 2.3E-37 7.9E-42 351.2 8.0 274 834-1115 23-307 (327)
195 1fvr_A Tyrosine-protein kinase 100.0 1E-36 3.5E-41 345.9 13.1 260 832-1115 23-304 (327)
196 2jam_A Calcium/calmodulin-depe 100.0 3E-36 1E-40 338.4 16.6 247 834-1105 9-262 (304)
197 2y7j_A Phosphorylase B kinase 100.0 2.9E-36 9.9E-41 346.9 16.6 248 834-1105 94-360 (365)
198 3sv0_A Casein kinase I-like; t 100.0 8.8E-36 3E-40 352.7 21.2 264 835-1115 8-282 (483)
199 3gbz_A Kinase, CMGC CDK; ssgci 100.0 1.1E-36 3.7E-41 345.7 12.6 264 833-1105 33-319 (329)
200 3lij_A Calcium/calmodulin depe 100.0 3.9E-36 1.3E-40 360.6 18.0 247 834-1105 37-292 (494)
201 2rku_A Serine/threonine-protei 100.0 2.2E-36 7.5E-41 337.7 14.7 245 834-1105 15-266 (294)
202 3nyv_A Calmodulin-domain prote 100.0 1.7E-36 5.8E-41 363.3 14.7 247 834-1105 26-282 (484)
203 2zmd_A Dual specificity protei 100.0 9.9E-37 3.4E-41 353.7 12.2 246 835-1105 57-321 (390)
204 3dbq_A Dual specificity protei 100.0 6.7E-37 2.3E-41 349.6 10.6 247 835-1106 10-275 (343)
205 1u5q_A Serine/threonine protei 100.0 1.6E-36 5.4E-41 346.2 13.6 245 834-1107 54-308 (348)
206 2yfx_A Tyrosine-protein kinase 100.0 1.1E-36 3.8E-41 345.6 12.2 258 834-1112 30-305 (327)
207 3n9x_A Phosphotransferase; mal 100.0 8.5E-36 2.9E-40 351.0 20.1 195 835-1036 27-253 (432)
208 1u59_A Tyrosine-protein kinase 100.0 2.2E-36 7.5E-41 336.4 14.0 254 840-1117 16-278 (287)
209 3lm5_A Serine/threonine-protei 100.0 3E-36 1E-40 341.8 15.3 249 835-1105 29-288 (327)
210 1t4h_A Serine/threonine-protei 100.0 3.3E-36 1.1E-40 335.6 15.2 243 836-1105 28-283 (290)
211 1xbb_A Tyrosine-protein kinase 100.0 1.9E-36 6.5E-41 337.6 13.3 254 834-1112 16-280 (291)
212 1vzo_A Ribosomal protein S6 ki 100.0 1.6E-36 5.3E-41 347.9 12.7 251 834-1106 54-323 (355)
213 1j1b_A Glycogen synthase kinas 100.0 9.3E-37 3.2E-41 357.6 11.0 263 835-1105 55-337 (420)
214 2owb_A Serine/threonine-protei 100.0 2.3E-36 7.9E-41 343.9 13.9 245 834-1105 41-292 (335)
215 3q5i_A Protein kinase; CDPK, m 100.0 4.1E-36 1.4E-40 361.3 16.7 247 834-1105 36-302 (504)
216 2ozo_A Tyrosine-protein kinase 100.0 4.2E-36 1.4E-40 367.7 16.8 252 841-1116 343-603 (613)
217 2buj_A Serine/threonine-protei 100.0 1.3E-36 4.4E-41 343.5 11.3 264 834-1116 29-311 (317)
218 3lxp_A Non-receptor tyrosine-p 100.0 4.2E-37 1.4E-41 347.5 7.1 268 837-1114 34-313 (318)
219 3ll6_A Cyclin G-associated kin 100.0 3.4E-36 1.2E-40 343.2 14.7 255 835-1114 29-311 (337)
220 4aaa_A Cyclin-dependent kinase 100.0 2.7E-36 9.1E-41 343.0 13.6 271 826-1105 17-307 (331)
221 1ua2_A CAK, cell division prot 100.0 3.9E-36 1.3E-40 343.7 14.9 265 833-1105 9-292 (346)
222 3q60_A ROP5B; pseudokinase, tr 100.0 2.8E-36 9.6E-41 348.4 13.8 249 836-1105 64-353 (371)
223 3nsz_A CK II alpha, casein kin 100.0 8.8E-36 3E-40 338.8 17.7 262 832-1105 34-320 (330)
224 2h6d_A 5'-AMP-activated protei 100.0 4.8E-36 1.6E-40 331.7 15.0 243 835-1105 12-262 (276)
225 1byg_A CSK, protein (C-termina 100.0 2.3E-36 8E-41 334.5 12.5 252 833-1113 20-275 (278)
226 3mi9_A Cell division protein k 100.0 5.9E-36 2E-40 343.2 16.2 266 833-1105 16-312 (351)
227 3o6n_A APL1; leucine-rich repe 100.0 7.8E-35 2.7E-39 339.0 25.8 319 94-454 43-361 (390)
228 2ycf_A Serine/threonine-protei 100.0 9.5E-36 3.3E-40 337.1 17.5 248 834-1105 10-275 (322)
229 3eqc_A Dual specificity mitoge 100.0 2E-36 7E-41 348.4 12.1 262 835-1105 34-325 (360)
230 2wtk_C Serine/threonine-protei 100.0 8.6E-36 2.9E-40 334.8 16.9 248 834-1105 5-264 (305)
231 3eb0_A Putative uncharacterize 100.0 2E-36 6.9E-41 351.1 11.9 263 835-1105 8-322 (383)
232 3a7i_A MST3 kinase, serine/thr 100.0 8.2E-36 2.8E-40 334.6 16.3 246 834-1106 22-272 (303)
233 4e7w_A Glycogen synthase kinas 100.0 1.4E-36 4.6E-41 353.3 10.1 269 835-1111 41-330 (394)
234 3com_A Serine/threonine-protei 100.0 8.7E-36 3E-40 336.3 16.3 249 834-1105 29-279 (314)
235 1phk_A Phosphorylase kinase; g 100.0 9E-36 3.1E-40 333.5 16.0 248 834-1105 17-284 (298)
236 2clq_A Mitogen-activated prote 100.0 4.3E-36 1.5E-40 335.5 13.2 247 838-1105 26-279 (295)
237 1cm8_A Phosphorylated MAP kina 100.0 9E-36 3.1E-40 342.8 16.0 254 835-1105 26-308 (367)
238 2xrw_A Mitogen-activated prote 100.0 2.2E-35 7.4E-40 340.7 19.2 256 834-1105 25-319 (371)
239 3kvw_A DYRK2, dual specificity 100.0 4.8E-36 1.6E-40 352.3 13.7 194 835-1038 98-302 (429)
240 4fl3_A Tyrosine-protein kinase 100.0 4.8E-36 1.6E-40 368.0 14.2 247 840-1111 375-631 (635)
241 3pfq_A PKC-B, PKC-beta, protei 100.0 1.1E-35 3.9E-40 367.2 17.3 245 834-1105 341-598 (674)
242 2r3i_A Cell division protein k 100.0 8.4E-36 2.9E-40 333.9 14.6 264 834-1105 3-284 (299)
243 1x8b_A WEE1HU, WEE1-like prote 100.0 6.6E-36 2.3E-40 332.7 13.3 242 834-1105 11-280 (289)
244 2w1i_A JAK2; chromosomal rearr 100.0 1.3E-36 4.5E-41 344.8 7.7 268 835-1112 42-323 (326)
245 3fhr_A MAP kinase-activated pr 100.0 9.6E-36 3.3E-40 338.7 14.1 253 834-1105 28-288 (336)
246 2w5a_A Serine/threonine-protei 100.0 3.7E-36 1.3E-40 333.1 10.4 257 834-1113 6-276 (279)
247 3qyz_A Mitogen-activated prote 100.0 9.1E-36 3.1E-40 343.2 14.0 262 835-1105 28-314 (364)
248 3byv_A Rhoptry kinase; malaria 100.0 1.2E-36 4.2E-41 352.1 6.5 238 835-1105 74-360 (377)
249 2pml_X PFPK7, Ser/Thr protein 100.0 9.6E-36 3.3E-40 341.2 13.4 262 834-1105 31-323 (348)
250 3fme_A Dual specificity mitoge 100.0 6.5E-36 2.2E-40 333.2 11.7 250 834-1105 7-267 (290)
251 2vwi_A Serine/threonine-protei 100.0 7.1E-36 2.4E-40 335.1 12.1 258 835-1105 16-288 (303)
252 2fst_X Mitogen-activated prote 100.0 4E-36 1.4E-40 345.4 9.3 257 834-1105 29-312 (367)
253 2j7t_A Serine/threonine-protei 100.0 9.7E-36 3.3E-40 333.9 12.2 249 834-1105 19-276 (302)
254 3rgf_A Cyclin-dependent kinase 100.0 9.7E-36 3.3E-40 348.1 12.6 196 839-1038 26-239 (405)
255 3e3p_A Protein kinase, putativ 100.0 2.4E-35 8.1E-40 339.6 15.4 273 831-1111 20-323 (360)
256 1wak_A Serine/threonine-protei 100.0 3.1E-35 1E-39 343.6 16.3 263 834-1105 37-392 (397)
257 2wei_A Calmodulin-domain prote 100.0 3.5E-35 1.2E-39 326.6 15.9 247 834-1105 22-277 (287)
258 1z57_A Dual specificity protei 100.0 3.2E-35 1.1E-39 335.5 15.3 260 835-1105 15-329 (339)
259 3oja_B Anopheles plasmodium-re 100.0 4.8E-34 1.6E-38 350.8 26.9 317 94-452 49-365 (597)
260 2x7f_A TRAF2 and NCK-interacti 100.0 2.6E-35 8.9E-40 334.3 13.9 248 835-1105 25-287 (326)
261 1blx_A Cyclin-dependent kinase 100.0 8E-35 2.8E-39 330.3 17.3 263 834-1105 11-297 (326)
262 3o6n_A APL1; leucine-rich repe 100.0 6.3E-34 2.1E-38 331.3 24.9 309 263-614 44-352 (390)
263 1zy4_A Serine/threonine-protei 100.0 5.1E-35 1.7E-39 328.1 15.0 250 834-1105 6-284 (303)
264 3an0_A Dual specificity mitoge 100.0 1.3E-35 4.6E-40 338.7 10.1 249 835-1105 52-311 (340)
265 4exu_A Mitogen-activated prote 100.0 2.8E-35 9.5E-40 339.8 12.8 256 835-1105 43-324 (371)
266 3oja_B Anopheles plasmodium-re 100.0 3.1E-34 1E-38 352.5 22.8 334 359-762 50-383 (597)
267 1u46_A ACK-1, activated CDC42 100.0 1.5E-35 5E-40 330.5 9.9 257 834-1113 18-286 (291)
268 2vx3_A Dual specificity tyrosi 100.0 9.6E-35 3.3E-39 336.9 16.9 197 834-1038 54-261 (382)
269 3a99_A Proto-oncogene serine/t 100.0 1.6E-35 5.3E-40 334.8 9.5 236 835-1105 44-294 (320)
270 2j0j_A Focal adhesion kinase 1 100.0 4.7E-35 1.6E-39 360.5 14.3 254 834-1112 390-652 (656)
271 2i6l_A Mitogen-activated prote 100.0 3.9E-35 1.3E-39 331.8 12.5 262 835-1105 12-306 (320)
272 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-34 4.7E-39 325.4 16.4 252 481-736 50-306 (313)
273 3qa8_A MGC80376 protein; kinas 100.0 1.1E-34 3.9E-39 349.3 16.5 260 833-1102 13-295 (676)
274 2b9h_A MAP kinase FUS3, mitoge 100.0 1.5E-34 5.1E-39 332.0 16.5 261 835-1105 12-306 (353)
275 2y4i_B KSR2, HKSR2, kinase sup 100.0 9.2E-35 3.1E-39 328.7 13.8 254 834-1113 33-304 (319)
276 3pg1_A Mitogen-activated prote 100.0 3.5E-35 1.2E-39 338.4 10.4 260 835-1105 23-317 (362)
277 3coi_A Mitogen-activated prote 100.0 7.9E-35 2.7E-39 334.1 13.2 256 835-1105 25-306 (353)
278 2iwi_A Serine/threonine-protei 100.0 5.6E-35 1.9E-39 329.3 11.3 237 834-1105 31-284 (312)
279 3cek_A Dual specificity protei 100.0 6E-35 2E-39 329.2 11.2 246 835-1105 29-293 (313)
280 1q8y_A SR protein kinase; tran 100.0 1.1E-34 3.6E-39 335.9 13.4 263 834-1105 19-334 (373)
281 3aln_A Dual specificity mitoge 100.0 1.1E-34 3.7E-39 329.3 12.3 252 835-1105 23-286 (327)
282 2eu9_A Dual specificity protei 100.0 1.7E-34 5.7E-39 331.9 13.9 261 834-1105 19-334 (355)
283 3p23_A Serine/threonine-protei 100.0 3.1E-34 1E-38 336.5 15.7 248 835-1105 25-284 (432)
284 4fmz_A Internalin; leucine ric 100.0 8.7E-33 3E-37 316.4 25.8 307 308-662 40-346 (347)
285 4fmz_A Internalin; leucine ric 100.0 7.3E-33 2.5E-37 317.0 25.1 309 282-638 38-346 (347)
286 2rio_A Serine/threonine-protei 100.0 4.4E-34 1.5E-38 336.4 15.0 250 837-1105 18-296 (434)
287 2dyl_A Dual specificity mitoge 100.0 7.7E-34 2.6E-38 321.0 14.6 250 833-1105 24-284 (318)
288 3uqc_A Probable conserved tran 100.0 2.3E-33 8E-38 310.8 16.2 230 835-1114 32-268 (286)
289 3m2w_A MAP kinase-activated pr 100.0 6E-33 2.1E-37 310.5 16.6 231 835-1105 18-257 (299)
290 2ft3_A Biglycan; proteoglycan, 100.0 7.4E-32 2.5E-36 306.4 22.4 289 337-659 34-330 (332)
291 2ft3_A Biglycan; proteoglycan, 100.0 2E-31 6.9E-36 302.8 25.7 290 312-636 33-331 (332)
292 4fcg_A Uncharacterized protein 100.0 1.6E-32 5.4E-37 310.4 15.7 281 21-373 23-314 (328)
293 3dzo_A Rhoptry kinase domain; 100.0 6.7E-33 2.3E-37 324.1 12.1 237 836-1105 80-364 (413)
294 1xku_A Decorin; proteoglycan, 100.0 1.7E-31 5.7E-36 303.3 22.7 291 336-659 31-329 (330)
295 2pzi_A Probable serine/threoni 100.0 1.7E-32 5.7E-37 341.6 15.6 234 835-1109 81-326 (681)
296 1xku_A Decorin; proteoglycan, 100.0 6.6E-31 2.2E-35 298.4 26.6 291 312-636 31-330 (330)
297 1z7x_W Ribonuclease inhibitor; 100.0 3.5E-35 1.2E-39 350.4 -9.6 386 239-644 3-446 (461)
298 2vuw_A Serine/threonine-protei 100.0 8.4E-33 2.9E-37 314.9 9.8 240 833-1105 19-332 (336)
299 1z7x_W Ribonuclease inhibitor; 100.0 5.4E-35 1.9E-39 348.7 -8.7 340 232-591 49-441 (461)
300 3ogk_B Coronatine-insensitive 100.0 1.4E-31 4.9E-36 329.8 2.3 412 136-615 65-527 (592)
301 3ogk_B Coronatine-insensitive 100.0 1.4E-31 4.6E-36 330.0 0.8 416 108-567 61-527 (592)
302 2z80_A TOLL-like receptor 2, v 100.0 7.1E-30 2.4E-34 292.7 12.7 256 458-740 53-319 (353)
303 4fcg_A Uncharacterized protein 100.0 1.3E-28 4.6E-33 278.2 19.4 224 482-735 82-314 (328)
304 2z66_A Variable lymphocyte rec 100.0 9.3E-29 3.2E-33 277.5 17.8 249 387-664 10-263 (306)
305 2z66_A Variable lymphocyte rec 100.0 6.5E-29 2.2E-33 278.8 16.0 258 458-741 29-293 (306)
306 2z80_A TOLL-like receptor 2, v 100.0 1.2E-28 4E-33 282.6 16.5 278 266-568 33-316 (353)
307 1ozn_A Reticulon 4 receptor; N 100.0 5.3E-28 1.8E-32 268.3 18.5 208 457-664 32-240 (285)
308 1wwl_A Monocyte differentiatio 100.0 2.1E-29 7.1E-34 283.3 6.7 248 454-736 40-310 (312)
309 1wwl_A Monocyte differentiatio 100.0 2.2E-29 7.4E-34 283.1 6.8 250 427-712 38-310 (312)
310 3o53_A Protein LRIM1, AGAP0063 99.9 3.5E-29 1.2E-33 282.0 5.0 265 436-740 14-281 (317)
311 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-27 6.5E-32 263.8 17.9 253 460-741 14-267 (285)
312 3o53_A Protein LRIM1, AGAP0063 99.9 9.1E-29 3.1E-33 278.7 6.1 255 364-633 14-270 (317)
313 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-26 3.6E-31 282.3 24.0 268 385-722 41-308 (622)
314 3zyi_A Leucine-rich repeat-con 99.9 1.9E-26 6.5E-31 273.5 23.8 229 96-373 75-303 (452)
315 3zyj_A Leucine-rich repeat-con 99.9 2.1E-26 7.4E-31 272.0 23.6 245 74-373 48-292 (440)
316 3zyi_A Leucine-rich repeat-con 99.9 2.2E-26 7.6E-31 272.9 22.8 247 315-590 57-303 (452)
317 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-26 1.2E-30 277.9 24.6 128 529-673 181-308 (622)
318 2p1m_B Transport inhibitor res 99.9 9.4E-30 3.2E-34 313.8 -6.9 454 56-589 34-543 (594)
319 3zyj_A Leucine-rich repeat-con 99.9 3.7E-26 1.3E-30 270.0 23.4 248 314-590 45-292 (440)
320 3oja_A Leucine-rich immune mol 99.9 2.5E-27 8.4E-32 282.5 9.0 234 482-730 35-270 (487)
321 2p1m_B Transport inhibitor res 99.9 5.6E-29 1.9E-33 306.8 -5.9 300 234-537 61-405 (594)
322 3oja_A Leucine-rich immune mol 99.9 7.1E-27 2.4E-31 278.6 9.0 234 385-657 35-270 (487)
323 2o6q_A Variable lymphocyte rec 99.9 5.7E-25 1.9E-29 241.6 19.2 145 54-205 2-146 (270)
324 2z62_A TOLL-like receptor 4, v 99.9 7.3E-25 2.5E-29 241.7 18.3 229 487-740 13-242 (276)
325 4azs_A Methyltransferase WBDD; 99.9 8.8E-27 3E-31 281.4 2.9 181 842-1034 242-437 (569)
326 3rfs_A Internalin B, repeat mo 99.9 3.4E-25 1.2E-29 243.5 14.4 225 483-745 21-245 (272)
327 2z62_A TOLL-like receptor 4, v 99.9 1.6E-24 5.3E-29 239.1 19.1 209 481-715 28-241 (276)
328 3rfs_A Internalin B, repeat mo 99.9 7.4E-25 2.5E-29 240.9 14.0 229 457-723 19-247 (272)
329 2o6q_A Variable lymphocyte rec 99.9 2.8E-23 9.4E-28 228.1 20.8 203 459-664 18-220 (270)
330 1p9a_G Platelet glycoprotein I 99.9 1.9E-23 6.7E-28 231.3 17.0 177 530-735 32-208 (290)
331 1p9a_G Platelet glycoprotein I 99.9 3E-23 1E-27 229.8 18.0 153 506-661 32-184 (290)
332 3goz_A Leucine-rich repeat-con 99.9 2.9E-25 9.8E-30 255.0 1.5 260 341-621 3-304 (362)
333 2ast_B S-phase kinase-associat 99.9 1.2E-24 4.1E-29 247.5 3.6 236 56-322 36-282 (336)
334 3goz_A Leucine-rich repeat-con 99.9 1.5E-24 5.3E-29 249.0 4.3 258 462-739 3-301 (362)
335 4glp_A Monocyte differentiatio 99.9 2.2E-23 7.5E-28 233.9 12.9 224 433-662 65-307 (310)
336 2ca6_A RAN GTPase-activating p 99.9 5.7E-25 2E-29 255.2 -2.1 240 499-739 26-320 (386)
337 4glp_A Monocyte differentiatio 99.9 3.6E-23 1.2E-27 232.1 12.4 201 504-735 90-307 (310)
338 3m19_A Variable lymphocyte rec 99.9 2.2E-22 7.4E-27 218.4 18.1 94 55-157 3-96 (251)
339 3m19_A Variable lymphocyte rec 99.9 3.1E-22 1.1E-26 217.1 19.2 180 482-664 15-194 (251)
340 3en9_A Glycoprotease, O-sialog 99.9 3.4E-24 1.2E-28 257.3 2.6 181 837-1035 339-538 (540)
341 1h6u_A Internalin H; cell adhe 99.9 1.6E-22 5.4E-27 226.3 15.6 173 477-663 59-231 (308)
342 2ca6_A RAN GTPase-activating p 99.9 1.4E-24 4.9E-29 251.8 -1.3 277 149-464 14-337 (386)
343 2xwt_C Thyrotropin receptor; s 99.9 1E-22 3.5E-27 219.3 13.0 196 530-732 32-236 (239)
344 2ast_B S-phase kinase-associat 99.9 1.1E-23 3.6E-28 239.7 4.3 256 97-406 48-315 (336)
345 1h6u_A Internalin H; cell adhe 99.9 6.4E-22 2.2E-26 221.4 15.6 192 504-712 40-231 (308)
346 2xwt_C Thyrotropin receptor; s 99.9 9.1E-22 3.1E-26 211.8 13.8 194 460-659 34-236 (239)
347 3cvr_A Invasion plasmid antige 99.9 1.7E-21 5.8E-26 233.6 16.1 192 506-723 60-255 (571)
348 4ay9_X Follicle-stimulating ho 99.9 4E-21 1.4E-25 219.3 16.3 243 484-735 12-259 (350)
349 4ay9_X Follicle-stimulating ho 99.8 7.5E-21 2.6E-25 217.0 16.3 239 388-659 13-256 (350)
350 2o6s_A Variable lymphocyte rec 99.8 8.5E-21 2.9E-25 199.5 15.4 133 530-662 29-161 (208)
351 2o6s_A Variable lymphocyte rec 99.8 9.8E-21 3.3E-25 199.0 15.7 181 484-674 10-190 (208)
352 3cvr_A Invasion plasmid antige 99.8 6.8E-21 2.3E-25 228.3 16.0 189 458-674 60-255 (571)
353 1zar_A RIO2 kinase; serine kin 99.8 9.1E-21 3.1E-25 208.4 6.9 137 838-1008 94-252 (282)
354 1h6t_A Internalin B; cell adhe 99.8 3.4E-20 1.2E-24 205.4 10.2 171 479-663 44-214 (291)
355 1m9s_A Internalin B; cell inva 99.8 1.2E-19 4.1E-24 220.2 14.6 237 459-723 23-259 (605)
356 4b8c_D Glucose-repressible alc 99.8 2.6E-20 8.8E-25 232.0 7.5 195 534-739 206-408 (727)
357 1m9s_A Internalin B; cell inva 99.8 1.7E-19 5.7E-24 218.9 12.3 193 480-713 20-212 (605)
358 1h6t_A Internalin B; cell adhe 99.8 2.4E-19 8.4E-24 198.5 12.3 190 482-712 25-214 (291)
359 1xeu_A Internalin C; cellular 99.8 1.1E-19 3.9E-24 197.9 9.4 170 480-664 18-187 (263)
360 2v70_A SLIT-2, SLIT homolog 2 99.8 7.1E-19 2.4E-23 186.1 13.3 153 557-713 15-168 (220)
361 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-18 4E-23 184.5 13.5 135 531-665 34-169 (220)
362 2xot_A Amphoterin-induced prot 99.8 7.9E-19 2.7E-23 201.1 12.8 176 484-662 21-202 (361)
363 1dce_A Protein (RAB geranylger 99.8 5E-21 1.7E-25 231.0 -6.2 215 456-729 348-567 (567)
364 1dce_A Protein (RAB geranylger 99.8 7.8E-21 2.7E-25 229.3 -5.0 202 429-665 346-549 (567)
365 2v9t_B SLIT homolog 2 protein 99.8 2E-18 7E-23 182.6 14.1 133 530-662 33-165 (220)
366 2v9t_B SLIT homolog 2 protein 99.8 2.4E-18 8.1E-23 182.1 14.2 153 484-639 14-166 (220)
367 4b8c_D Glucose-repressible alc 99.8 9.1E-20 3.1E-24 227.1 3.8 266 23-350 130-405 (727)
368 3e6j_A Variable lymphocyte rec 99.8 6.6E-18 2.3E-22 180.0 16.5 154 508-665 22-175 (229)
369 1xeu_A Internalin C; cellular 99.8 1.4E-18 4.7E-23 189.3 10.9 170 456-640 18-187 (263)
370 3e6j_A Variable lymphocyte rec 99.8 7.5E-18 2.6E-22 179.5 16.3 155 483-641 21-175 (229)
371 2xot_A Amphoterin-induced prot 99.8 2.5E-18 8.5E-23 196.9 13.3 176 508-711 21-202 (361)
372 4ezg_A Putative uncharacterize 99.7 1.6E-17 5.4E-22 172.7 11.9 154 501-662 40-194 (197)
373 4ezg_A Putative uncharacterize 99.7 2.3E-17 7.9E-22 171.4 11.7 155 478-639 41-195 (197)
374 1w8a_A SLIT protein; signaling 99.7 2.9E-17 1E-21 169.7 11.9 132 532-666 11-143 (192)
375 1w8a_A SLIT protein; signaling 99.7 4.1E-17 1.4E-21 168.6 11.5 133 555-715 10-143 (192)
376 3sb4_A Hypothetical leucine ri 99.7 2E-17 6.9E-22 186.9 9.2 201 234-438 96-327 (329)
377 3sb4_A Hypothetical leucine ri 99.7 2.7E-17 9.3E-22 185.8 9.0 102 504-607 225-327 (329)
378 1zth_A RIO1 serine protein kin 99.7 4.4E-17 1.5E-21 176.8 9.2 131 838-983 51-219 (258)
379 2ell_A Acidic leucine-rich nuc 99.6 6.4E-16 2.2E-20 156.0 11.5 136 553-716 24-164 (168)
380 2ell_A Acidic leucine-rich nuc 99.6 6.1E-16 2.1E-20 156.2 10.3 132 529-662 24-160 (168)
381 4fdw_A Leucine rich hypothetic 99.6 1E-14 3.6E-19 168.1 21.2 266 119-445 112-383 (401)
382 2wfh_A SLIT homolog 2 protein 99.6 2.7E-15 9.2E-20 154.9 12.5 127 533-663 14-140 (193)
383 2je0_A Acidic leucine-rich nuc 99.6 7.4E-16 2.5E-20 152.1 7.3 111 545-657 34-148 (149)
384 2o6r_A Variable lymphocyte rec 99.6 4.5E-15 1.6E-19 151.1 13.1 131 533-666 11-141 (177)
385 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.7E-20 150.1 8.6 128 505-634 17-149 (149)
386 4fdw_A Leucine rich hypothetic 99.6 4E-14 1.4E-18 163.2 21.4 264 239-541 113-382 (401)
387 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.9E-19 150.2 13.3 94 545-638 46-139 (193)
388 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 4.1E-19 148.0 13.2 128 484-614 10-137 (177)
389 4fs7_A Uncharacterized protein 99.6 5.4E-14 1.8E-18 162.9 20.1 154 233-394 65-218 (394)
390 4fs7_A Uncharacterized protein 99.6 7E-14 2.4E-18 162.0 20.6 196 257-464 155-350 (394)
391 1ds9_A Outer arm dynein; leuci 99.6 1.4E-16 4.9E-21 165.5 -2.2 151 553-735 18-185 (198)
392 1ds9_A Outer arm dynein; leuci 99.5 1.6E-16 5.5E-21 165.2 -5.6 92 548-642 65-157 (198)
393 4gyi_A RIO2 kinase; protein ki 99.5 1.1E-14 3.6E-19 163.5 8.4 131 836-983 97-265 (397)
394 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.6E-19 146.3 8.0 104 554-661 43-152 (176)
395 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 8.8E-19 145.3 8.2 134 500-638 14-153 (176)
396 3g39_A Variable lymphocyte rec 99.4 2.8E-13 9.7E-18 136.6 11.3 107 555-664 11-117 (170)
397 2r9u_A Variable lymphocyte rec 99.4 4.2E-13 1.4E-17 135.8 11.1 104 556-662 15-118 (174)
398 3g39_A Variable lymphocyte rec 99.4 6.3E-13 2.2E-17 134.0 11.3 105 533-640 13-117 (170)
399 2r9u_A Variable lymphocyte rec 99.4 7.8E-13 2.7E-17 133.8 10.5 105 532-639 15-119 (174)
400 4gt6_A Cell surface protein; l 99.3 3.7E-11 1.3E-15 139.0 20.9 113 254-369 53-169 (394)
401 4gt6_A Cell surface protein; l 99.3 8.4E-11 2.9E-15 136.0 23.1 330 234-638 58-391 (394)
402 3un9_A NLR family member X1; l 99.3 5.5E-14 1.9E-18 160.4 -5.5 191 96-325 72-283 (372)
403 3un9_A NLR family member X1; l 99.3 7E-14 2.4E-18 159.6 -4.7 187 120-349 72-283 (372)
404 2ifg_A High affinity nerve gro 99.2 2.8E-11 9.5E-16 137.6 9.7 102 558-662 13-116 (347)
405 2ifg_A High affinity nerve gro 99.1 9.8E-11 3.4E-15 133.0 11.1 130 340-472 12-143 (347)
406 4h09_A Hypothetical leucine ri 99.1 6.6E-09 2.3E-13 119.4 22.0 135 304-442 209-343 (379)
407 3tm0_A Aminoglycoside 3'-phosp 99.1 3.1E-10 1.1E-14 123.3 10.1 137 835-981 15-212 (263)
408 4h09_A Hypothetical leucine ri 99.0 2.7E-08 9.3E-13 114.2 24.5 146 281-431 210-355 (379)
409 2ra8_A Uncharacterized protein 98.9 9.7E-10 3.3E-14 124.1 5.6 65 238-302 251-321 (362)
410 2ra8_A Uncharacterized protein 98.9 5.9E-10 2E-14 125.9 3.7 207 68-299 106-341 (362)
411 3dxp_A Putative acyl-COA dehyd 98.8 8E-09 2.7E-13 117.7 12.0 136 840-982 44-248 (359)
412 1nd4_A Aminoglycoside 3'-phosp 98.8 6.4E-09 2.2E-13 112.7 10.1 130 840-981 25-213 (264)
413 3rw6_A Nuclear RNA export fact 98.8 4.2E-10 1.4E-14 120.3 -1.8 141 56-198 77-257 (267)
414 3sg8_A APH(2'')-ID; antibiotic 98.6 7.4E-09 2.5E-13 115.0 3.3 180 840-1035 26-287 (304)
415 1io0_A Tropomodulin; LRR prote 98.4 1.6E-08 5.6E-13 102.9 -1.6 115 91-205 31-164 (185)
416 3rw6_A Nuclear RNA export fact 98.4 3.4E-08 1.1E-12 105.6 -1.0 80 574-655 167-257 (267)
417 3r70_A Aminoglycoside phosphot 98.3 1E-06 3.5E-11 98.3 10.0 131 839-983 42-238 (320)
418 4gkh_A Aminoglycoside 3'-phosp 98.3 2E-06 6.7E-11 93.5 10.7 135 840-981 30-222 (272)
419 1io0_A Tropomodulin; LRR prote 98.3 1.4E-07 4.9E-12 95.9 1.3 122 232-373 29-164 (185)
420 3tdw_A Gentamicin resistance p 98.1 1E-05 3.6E-10 89.3 11.4 133 840-982 25-224 (306)
421 3e4g_A ATP synthase subunit S, 98.1 6.5E-07 2.2E-11 88.5 1.3 83 121-203 62-150 (176)
422 3ovc_A Hygromycin-B 4-O-kinase 98.0 1.1E-05 3.8E-10 91.2 10.1 141 840-983 47-244 (362)
423 3d1u_A Putative fructosamine-3 98.0 1.7E-05 5.8E-10 86.5 11.0 135 840-981 21-215 (288)
424 3e4g_A ATP synthase subunit S, 97.9 1.4E-06 4.6E-11 86.2 0.4 87 96-182 61-154 (176)
425 3ats_A Putative uncharacterize 97.9 1.6E-05 5.4E-10 90.1 8.9 77 840-916 26-122 (357)
426 2q83_A YTAA protein; 2635576, 97.7 5.2E-05 1.8E-09 85.3 7.7 140 840-981 38-251 (346)
427 2olc_A MTR kinase, methylthior 97.6 0.00013 4.3E-09 84.0 9.4 71 840-912 36-120 (397)
428 3jr1_A Putative fructosamine-3 97.4 0.00041 1.4E-08 76.2 9.5 136 840-978 42-232 (312)
429 1pgv_A TMD-1, tropomodulin TMD 97.2 3.9E-05 1.3E-09 77.3 -0.4 114 92-205 37-170 (197)
430 2pyw_A Uncharacterized protein 97.2 0.00079 2.7E-08 77.9 9.6 76 952-1031 232-312 (420)
431 3csv_A Aminoglycoside phosphot 97.0 0.0018 6.3E-08 72.2 10.7 140 840-982 24-217 (333)
432 3f7w_A Putative fructosamine-3 97.0 0.0018 6E-08 70.6 9.4 70 840-914 21-97 (288)
433 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00058 2E-08 68.7 3.9 90 284-373 66-170 (197)
434 3dxq_A Choline/ethanolamine ki 96.8 0.0023 7.9E-08 70.2 8.2 135 839-982 23-202 (301)
435 1nw1_A Choline kinase (49.2 KD 96.6 0.0017 5.8E-08 75.0 6.5 71 840-914 79-159 (429)
436 3feg_A Choline/ethanolamine ki 96.5 0.0032 1.1E-07 71.0 7.6 139 840-982 56-254 (379)
437 2qg7_A Ethanolamine kinase PV0 96.5 0.0047 1.6E-07 71.6 8.6 71 840-914 114-188 (458)
438 2ppq_A HSK, HK, homoserine kin 96.5 0.0029 1E-07 70.1 6.7 140 840-981 28-216 (322)
439 1zyl_A Hypothetical protein YI 96.2 0.015 5.1E-07 64.4 10.9 139 840-982 32-223 (328)
440 3rfe_A Platelet glycoprotein I 96.2 0.006 2.1E-07 57.3 6.3 55 557-613 12-67 (130)
441 3c5i_A Choline kinase; choline 96.2 0.0061 2.1E-07 68.9 7.6 71 840-914 39-121 (369)
442 3rfe_A Platelet glycoprotein I 96.1 0.005 1.7E-07 57.8 5.2 56 605-662 12-68 (130)
443 3i1a_A Spectinomycin phosphotr 95.5 0.014 4.9E-07 65.0 6.4 66 845-914 34-108 (339)
444 2yle_A Protein spire homolog 1 95.3 0.052 1.8E-06 54.8 8.8 101 912-1032 33-133 (229)
445 3f2s_A CK, chetk-alpha, cholin 94.2 0.071 2.4E-06 60.2 7.7 138 840-981 58-279 (401)
446 3mes_A Choline kinase; malaria 93.8 0.11 3.6E-06 59.4 8.2 71 840-914 76-157 (424)
447 2k1k_A Ephrin type-A receptor 91.5 0.024 8.2E-07 39.6 -0.8 30 769-798 5-34 (38)
448 3g15_A CK, chetk-alpha, cholin 87.3 0.79 2.7E-05 52.0 7.1 30 953-982 245-280 (401)
449 2ks1_B Epidermal growth factor 79.2 0.31 1.1E-05 35.1 -0.5 18 775-792 11-28 (44)
450 2jwa_A Receptor tyrosine-prote 78.6 0.24 8.3E-06 35.5 -1.2 15 773-787 10-24 (44)
451 4ann_A ESSB; membrane protein, 75.8 5.6 0.00019 40.1 7.3 117 885-1037 43-159 (215)
452 2l2t_A Receptor tyrosine-prote 72.2 0.44 1.5E-05 34.2 -1.2 18 775-792 10-27 (44)
453 4ano_A ESSB; membrane protein, 61.8 14 0.00049 37.2 6.8 116 885-1037 48-164 (219)
454 3cxl_A N-chimerin; SH2, RHO-GA 56.7 1.2 4.2E-05 51.3 -2.3 56 839-897 147-214 (463)
455 2l34_A TYRO protein tyrosine k 55.3 3.1 0.0001 27.9 0.4 27 772-798 4-30 (33)
456 2lz0_A Uncharacterized protein 49.9 32 0.0011 29.8 6.3 43 276-319 8-50 (100)
457 2k9y_A Ephrin type-A receptor 44.4 3.1 0.00011 29.5 -0.9 16 777-792 12-27 (41)
458 2lz0_A Uncharacterized protein 38.7 57 0.002 28.2 6.1 46 299-345 7-52 (100)
459 2ks1_B Epidermal growth factor 34.0 5.3 0.00018 28.8 -1.1 24 775-798 8-31 (44)
460 2x6h_A GH13170P, VPS34, phosph 23.7 1.5E+02 0.0052 35.4 8.2 45 930-981 529-575 (696)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-93 Score=903.68 Aligned_cols=704 Identities=28% Similarity=0.432 Sum_probs=647.6
Q ss_pred cCCCcHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceeeeeeeecCCCceEEEecCCCccccc---CccchhhhccCCcc
Q 001226 22 SSPPSAISLVQFLDSLPKQSQSHLPWNQSVSTSAPCKWSGVSCYNNSSSLKALNLSGFGLSGV---LNNSISYICKNQHL 98 (1119)
Q Consensus 22 ~~~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~---~~~~~~~~~~l~~l 98 (1119)
+.++|++|||+||+++.+++ .+.+|+. .++||+|+||+|+ +++|++|+|++.++.|. ++ ..+..+++|
T Consensus 9 ~~~~~~~all~~k~~~~~~~-~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~---~~l~~L~~L 79 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN-LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVS---SSLLSLTGL 79 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT-SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHH---HHTTTCTTC
T ss_pred CCHHHHHHHHHHHhhCCCcc-cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccC---hhHhccCcc
Confidence 35678999999999998766 7789974 3689999999998 58999999999999997 55 346678999
Q ss_pred cEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCc--cccccCccCEEEccCccccCCCCccc-ccccccceeee
Q 001226 99 LSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPP--EIFKLKRLSWLDLGYNSLSGKIPPQV-SLCYSLESIGF 175 (1119)
Q Consensus 99 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L 175 (1119)
+.++++.+.+. .+|..++++++|++|+|++|+++|.+|. .++++++|++|||++|.+++.+|..+ .++++|++|++
T Consensus 80 ~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 80 ESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred cccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 99999998775 4678999999999999999999999998 99999999999999999999888876 89999999999
Q ss_pred cccccccccCcc---CCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccC
Q 001226 176 HNNFLNGELPND---ICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFG 252 (1119)
Q Consensus 176 ~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~ 252 (1119)
++|.+++..|.. +.++++|++|++++|++++..+ +.++++|++|++++|++.
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------------------------~~~l~~L~~L~Ls~n~l~ 213 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-------------------------VSRCVNLEFLDVSSNNFS 213 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-------------------------CTTCTTCCEEECCSSCCC
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-------------------------cccCCcCCEEECcCCcCC
Confidence 999999988877 8899999999999999885432 367899999999999998
Q ss_pred CccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCccc
Q 001226 253 GAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSV 332 (1119)
Q Consensus 253 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 332 (1119)
+.++. +.++++|++|+|++|++++.+|..+.++++|++|++++|++++.+|.. .+++|++|+|++|.+++.+|..+
T Consensus 214 ~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 214 TGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp SCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCS
T ss_pred CCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHH
Confidence 76654 889999999999999999999999999999999999999999877765 89999999999999999999988
Q ss_pred CCC-CCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchh-hhcccccceeeccCccccCCCCccccccC-c
Q 001226 333 GNL-SSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPE-ICNLAKLEVLYLFNNRIEGAIPHQIGRMS-K 409 (1119)
Q Consensus 333 ~~l-~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~ 409 (1119)
... ++|++|++++|++++..|..|+++++|++|++++|.+++.+|.. +.++++|++|++++|++++.+|..+..++ +
T Consensus 290 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 775 99999999999999999999999999999999999999888876 89999999999999999999999999987 9
Q ss_pred ceEEEeecccccccCCccccC--CCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceee
Q 001226 410 LVELALYNNRLTGRIPPDITR--LRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLV 487 (1119)
Q Consensus 410 L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~ 487 (1119)
|++|++++|++++.+|..+.. +++|+.|++++|++++.+|..+ ..+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 999999999999989988887 8899999999999998877765 4689999999999999999999999999999999
Q ss_pred ccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccC
Q 001226 488 LGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSG 567 (1119)
Q Consensus 488 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 567 (1119)
+++|++++.+|..++.+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..++.+++|++|+|++|+++|
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCc----------------------cccccCChhhhhcc
Q 001226 568 SIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDN----------------------YLAGSIPSEVISLE 625 (1119)
Q Consensus 568 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N----------------------~l~~~~p~~~~~l~ 625 (1119)
.+|..++++++|+.|+|++|++.|.+|..+.....+..+++..+ .+.+..|..+..+.
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 99999999999999999999999999999988887777666542 35667788888899
Q ss_pred cCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeec
Q 001226 626 KMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDL 705 (1119)
Q Consensus 626 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~L 705 (1119)
.++.++++.|.++|.+|..|+.+++|+.|||++|+++|.+|..++.+..+. .|+|++|+++|.+|+.++++++|+.|||
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCC-EEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCC-EEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence 999999999999999999999999999999999999999999999998875 6999999999999999999999999999
Q ss_pred cCceecccCCccccccccceEEecccccccccCCCccccccccCCccccCCcccccC--CCCCC
Q 001226 706 SSNSFSGEIPTEVNNMVSLYFVNISFNHFSGKLPASWTTLMVSYPGSFLGNSELCRQ--GNCGK 767 (1119)
Q Consensus 706 s~N~l~g~ip~~~~~~~~l~~l~ls~N~~~g~~p~~~~~~~~~~~~~~~~n~~~c~~--~~c~~ 767 (1119)
|+|+|+|.||..+..+++|+.||+|+|+|+|.||.+ .+|.++.+.+|.||+++||. ..|..
T Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~ 750 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDP 750 (768)
T ss_dssp CSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCCS
T ss_pred CCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCcCCCC
Confidence 999999999999999999999999999999999986 67888899999999999996 47853
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-76 Score=746.42 Aligned_cols=631 Identities=30% Similarity=0.463 Sum_probs=583.9
Q ss_pred CCcccEEEcCCCcccCC---CCcccccCCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCc--ccccccc
Q 001226 95 NQHLLSLDLSGNEFTGS---IPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPP--QVSLCYS 169 (1119)
Q Consensus 95 l~~l~~L~Ls~n~~~~~---~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~ 169 (1119)
-.+++.|||+++.+.|. +|..++++++|+.++++.+.+. .+|..++.+++|++|||++|.++|.+|. .++++++
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 36899999999999998 9999999999999999999876 4778999999999999999999999998 9999999
Q ss_pred cceeeecccccccccCccC-CCcccccEEEeccccccccCCCCCccccceeeeeeccccccCcccc---ccCCCCCcEEE
Q 001226 170 LESIGFHNNFLNGELPNDI-CSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTS---LSNCRNLVEFS 245 (1119)
Q Consensus 170 L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~---l~~l~~L~~L~ 245 (1119)
|++|+|++|.+++..|..+ .++++|++|++++|++++.. |.. +.++++|++|+
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------------------~~~~~~~~~l~~L~~L~ 184 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN-----------------------VVGWVLSDGCGELKHLA 184 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEET-----------------------HHHHHHTTCCTTCCEEE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcC-----------------------ChhhhhhccCCCCCEEE
Confidence 9999999999999988876 89999999999999988543 333 78899999999
Q ss_pred ccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccc
Q 001226 246 ASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLV 325 (1119)
Q Consensus 246 l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 325 (1119)
+++|.+.+.++. ..+++|++|+|++|++++.+|. +.++++|++|++++|++++..+..+..+++|++|+|++|.++
T Consensus 185 Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 185 ISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp CCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred CCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc
Confidence 999999876543 7889999999999999988887 999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCCCCCeEEccCCcccCCCCCCCCCC-CCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCcc-
Q 001226 326 GQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNC-GSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQ- 403 (1119)
Q Consensus 326 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l-~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~- 403 (1119)
+.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|..|.++++|++|++++|++++.+|..
T Consensus 261 ~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~ 338 (768)
T 3rgz_A 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338 (768)
T ss_dssp ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH
T ss_pred CccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH
Confidence 888765 89999999999999999999998875 99999999999999999999999999999999999999777765
Q ss_pred ccccCcceEEEeecccccccCCccccCCC-CcCEEEccCccCcccchhhhhcc-CCccceeccccceeeCccCCcccccc
Q 001226 404 IGRMSKLVELALYNNRLTGRIPPDITRLR-NLQFLSLAHNHLTGEVALELGKH-FPYLSRLDLTGNSFYGPIPANICVGT 481 (1119)
Q Consensus 404 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~~~ 481 (1119)
+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.++..+... ++.|++|++++|.+++.+|..++.++
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 99999999999999999999999999998 99999999999998888776543 78899999999999999999999999
Q ss_pred ccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEecc
Q 001226 482 NLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFS 561 (1119)
Q Consensus 482 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls 561 (1119)
+|+.|++++|++++.+|..++++++|+.|++++|++++.+|..+..+++|++|++++|++++.+|..++.+++|++|+|+
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCc------
Q 001226 562 ENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQEN------ 635 (1119)
Q Consensus 562 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N------ 635 (1119)
+|++++.+|.+|+++++|++|+|++|++.|.+|..++.+++|+.|||++|+++|.+|.++.....+..+++..+
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999988777666555442
Q ss_pred ----------------cCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccc
Q 001226 636 ----------------NLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDK 699 (1119)
Q Consensus 636 ----------------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~ 699 (1119)
.+.|..|..+..+..+..++++.|.+.|.+|..+..+..+. .||+++|+++|.+|..++++++
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~-~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM-FLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC-EEECCSSCCBSCCCGGGGGCTT
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc-EEECcCCcccccCCHHHhcccc
Confidence 35677888888999999999999999999999999888764 6999999999999999999999
Q ss_pred cceeeccCceecccCCccccccccceEEecccccccccCCCccccccccCCccccCC
Q 001226 700 LQILDLSSNSFSGEIPTEVNNMVSLYFVNISFNHFSGKLPASWTTLMVSYPGSFLGN 756 (1119)
Q Consensus 700 L~~L~Ls~N~l~g~ip~~~~~~~~l~~l~ls~N~~~g~~p~~~~~~~~~~~~~~~~n 756 (1119)
|+.|||++|+|+|.||+.++++++|+.||+|+|+++|.||..+..+.....-..+.|
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 999999999999999999999999999999999999999998777655544455555
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-62 Score=615.52 Aligned_cols=588 Identities=21% Similarity=0.188 Sum_probs=412.8
Q ss_pred EecCCCcccccCccchhhhccCCcccEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEccC
Q 001226 74 LNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGY 153 (1119)
Q Consensus 74 l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~ 153 (1119)
+++++.+++.++.. + .+++++|+|++|.+++..+..|+++++|++|+|++|++++..|..++++++|++|+|++
T Consensus 9 ~~cs~~~L~~ip~~-~-----~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 9 ADCSHLKLTQVPDD-L-----PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp EECCSSCCSSCCSC-S-----CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred eECCCCCccccccc-c-----CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 45566677665432 2 16899999999999988888899999999999999999998899999999999999999
Q ss_pred ccccCCCCcccccccccceeeecccccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccc
Q 001226 154 NSLSGKIPPQVSLCYSLESIGFHNNFLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPT 233 (1119)
Q Consensus 154 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~ 233 (1119)
|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|++++.. |.
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------------------~~ 139 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-----------------------LG 139 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-----------------------CC
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC-----------------------ch
Confidence 9999665668999999999999999999888899999999999999999987543 34
Q ss_pred cccCCCCCcEEEccCCccCCccChhhhh--cCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCccccc--
Q 001226 234 SLSNCRNLVEFSASSNNFGGAISPWIFK--GLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQIS-- 309 (1119)
Q Consensus 234 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-- 309 (1119)
.++++++|++|++++|++++. .+..+. .+++|++|++++|++++..|..+..+++|+.|++++|.+.......+.
T Consensus 140 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 218 (680)
T 1ziw_A 140 TQVQLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218 (680)
T ss_dssp SSSCCTTCCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH
T ss_pred hhcccccCCEEEccCCccccc-CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHH
Confidence 578899999999999999754 444443 568999999999999999999999999999999999988643322221
Q ss_pred -CCCCCcEEEccccccccccCcccCCCCC--CCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhccccc
Q 001226 310 -HCNQLQVIALSRNNLVGQIPRSVGNLSS--LNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKL 386 (1119)
Q Consensus 310 -~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L 386 (1119)
..++|++|++++|.+++..|..+.+++. |+.|++++|++++..+..|+.+++|++|++++|.+++..|..|.++++|
T Consensus 219 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (680)
T 1ziw_A 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298 (680)
T ss_dssp HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred hhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence 3578999999999999888999988865 9999999999998888899999999999999999998889999999999
Q ss_pred ceeeccCccccC-----CCCc----cccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCccc-chhhhhcc-
Q 001226 387 EVLYLFNNRIEG-----AIPH----QIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGE-VALELGKH- 455 (1119)
Q Consensus 387 ~~L~L~~N~l~~-----~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~- 455 (1119)
+.|++++|...+ .+|. .|..+++|++|++++|++++..+..|..+++|++|++++|.++.. ++...+..
T Consensus 299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~ 378 (680)
T 1ziw_A 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378 (680)
T ss_dssp CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc
Confidence 999999886553 2222 677888888999988888887777888888888888888876432 22221111
Q ss_pred -CCccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCccee
Q 001226 456 -FPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFL 534 (1119)
Q Consensus 456 -l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 534 (1119)
.+.|+.|++++|++++..|..+..+++|+.|++++|++++.+| +..+..+++|++|
T Consensus 379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------------------~~~~~~l~~L~~L 435 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT-----------------------GQEWRGLENIFEI 435 (680)
T ss_dssp TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC-----------------------SGGGTTCTTCCEE
T ss_pred ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC-----------------------cccccCcccccEE
Confidence 1345555555555555545555555555555555555544333 1344444444444
Q ss_pred eccCcccCCCCCccccccccceEEeccCCccc--CCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcc
Q 001226 535 DVRGNLLQGSIPPVFGFWSNLTMLDFSENRLS--GSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNY 612 (1119)
Q Consensus 535 ~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 612 (1119)
++++|++++..+..|..+++|+.|++++|.++ +.+|..|.++++|+.|+|++|++++..|..+..+++|++|+|++|+
T Consensus 436 ~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp ECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC
Confidence 44444444444444555555555555555544 3445555555555555555555554444445555555555555555
Q ss_pred ccccC--------ChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccc
Q 001226 613 LAGSI--------PSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNN 684 (1119)
Q Consensus 613 l~~~~--------p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N 684 (1119)
+++.. +..+..+++|+.|+|++|+++...+..|.++++|+.|+|++|+++
T Consensus 516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~---------------------- 573 (680)
T 1ziw_A 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN---------------------- 573 (680)
T ss_dssp CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------------------
T ss_pred ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC----------------------
Confidence 54321 122555666666666666666443445666666666444444333
Q ss_pred cccCCcccccccccccceeeccCceecccCCcccc-ccccceEEecccccccccCC
Q 001226 685 KLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVN-NMVSLYFVNISFNHFSGKLP 739 (1119)
Q Consensus 685 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~l~~l~ls~N~~~g~~p 739 (1119)
+..|..|.++++|+.|+|++|+|++..|..+. .+++|+.+++++|++.+.-+
T Consensus 574 ---~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 574 ---TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp ---CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ---cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 22233344455555555555555544443343 44555555555555555433
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-62 Score=614.94 Aligned_cols=591 Identities=21% Similarity=0.195 Sum_probs=346.1
Q ss_pred cEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCcccccccccceeeeccc
Q 001226 99 LSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESIGFHNN 178 (1119)
Q Consensus 99 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 178 (1119)
+.+|.++++++ .+|..+. +++++|+|++|++++..+..+.++++|++|||++|.+++..|..++++++|++|+|++|
T Consensus 7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 46888888887 6777665 78999999999999877778999999999999999999888888888999999999999
Q ss_pred ccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCCccChh
Q 001226 179 FLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGGAISPW 258 (1119)
Q Consensus 179 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~~~~~~ 258 (1119)
.++...+..|+++++|++|++++|++++..| ..++++++|++|++++|.+++. .+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-----------------------~~~~~l~~L~~L~Ls~n~l~~~-~~~ 139 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-----------------------NPFVKQKNLITLDLSHNGLSST-KLG 139 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCS-----------------------CTTTTCTTCCEEECCSSCCSCC-CCC
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccCh-----------------------hHccccCCCCEEECCCCccccc-Cch
Confidence 8887766678888888888888888764322 3455566666666666655432 233
Q ss_pred hhhcCCCccEEEcCCCccCCCcchhhc--CCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCC
Q 001226 259 IFKGLLQLEVLYLDDNNLEGQIPETLW--GLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLS 336 (1119)
Q Consensus 259 ~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 336 (1119)
.|.++++|++|++++|++++..+..+. .+++|++|++++|++++..+..|..+++|+.|++++|.+.+.....+.
T Consensus 140 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--- 216 (680)
T 1ziw_A 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC--- 216 (680)
T ss_dssp SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHH---
T ss_pred hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHH---
Confidence 445555555555555555554444433 234555555555555554454555555555555544444321111100
Q ss_pred CCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccc--cceeeccCccccCCCCccccccCcceEEE
Q 001226 337 SLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAK--LEVLYLFNNRIEGAIPHQIGRMSKLVELA 414 (1119)
Q Consensus 337 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~--L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 414 (1119)
..+ ..++|+.|++++|.+++..|..+..++. |+.|++++|++++..|..|+.+++|++|+
T Consensus 217 -----------------~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (680)
T 1ziw_A 217 -----------------LEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278 (680)
T ss_dssp -----------------HHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred -----------------HHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEee
Confidence 000 1245555555555555555555555543 66666666666655555566666666666
Q ss_pred eecccccccCCccccCCCCcCEEEccCccCcccch--------hhhhccCCccceeccccceeeCccCCcccccccccee
Q 001226 415 LYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVA--------LELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVL 486 (1119)
Q Consensus 415 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L 486 (1119)
+++|++++..|..|..+++|+.|++++|...+.++ ...+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 358 (680)
T 1ziw_A 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358 (680)
T ss_dssp CCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred CCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence 66666665555666666666666666554432211 1112233444444444444444444444444444444
Q ss_pred eccCccccCC--CCcccccc--ccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccC
Q 001226 487 VLGNNRFNGS--FPIEIGKC--SSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSE 562 (1119)
Q Consensus 487 ~L~~N~l~~~--~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~ 562 (1119)
++++|.+... .+..+..+ ++|+.|++++|++++..|..+..+++|+.|++++|++++.+|
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------- 422 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT---------------- 422 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC----------------
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC----------------
Confidence 4444443211 11112111 344555555555554444444444444444444444444333
Q ss_pred CcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcccc--ccCChhhhhcccCCeeEccCccCccC
Q 001226 563 NRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLA--GSIPSEVISLEKMQSLSLQENNLSGA 640 (1119)
Q Consensus 563 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~ 640 (1119)
+..|.++++|++|++++|++.+..+..|..+++|+.|++++|.++ +.+|..+..+++|+.|+|++|++++.
T Consensus 423 -------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i 495 (680)
T 1ziw_A 423 -------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495 (680)
T ss_dssp -------SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC
T ss_pred -------cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC
Confidence 134444444555555555444444444444445555555554443 23444444445555555555555544
Q ss_pred CCccccccccccEeecCCcccCCCcc--------ccchhhccccceeeeccccccCCcccccccccccceeeccCceecc
Q 001226 641 IPDAFSSVQSLFELQLGSNIFDGSIP--------CSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSG 712 (1119)
Q Consensus 641 ~p~~~~~l~~L~~L~L~~N~l~~~~p--------~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 712 (1119)
.|..|..+++|++|+|++|.+++..+ ..+..+..+ +.|++++|+++...+..|+++++|+.|||++|+|++
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L-~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC-CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence 44445555555555555554443211 113334433 347777777774444578999999999999999996
Q ss_pred cCCccccccccceEEecccccccccCCCccc-cccccCCccccCCccccc
Q 001226 713 EIPTEVNNMVSLYFVNISFNHFSGKLPASWT-TLMVSYPGSFLGNSELCR 761 (1119)
Q Consensus 713 ~ip~~~~~~~~l~~l~ls~N~~~g~~p~~~~-~~~~~~~~~~~~n~~~c~ 761 (1119)
..|..+..+++|+.|++++|++++.+|..+. .+.....-...+||-.|.
T Consensus 575 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 5555578999999999999999987776544 454555667789988775
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.2e-58 Score=565.84 Aligned_cols=534 Identities=19% Similarity=0.165 Sum_probs=346.8
Q ss_pred EEecCCCcccccCccchhhhccCCcccEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEcc
Q 001226 73 ALNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLG 152 (1119)
Q Consensus 73 ~l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls 152 (1119)
.+++++.+++.++... .+++++|||++|.+++..|..|+++++|++|+|++|++++..|.+|+++++|++|+|+
T Consensus 16 ~~~c~~~~l~~iP~~l------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL------PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp EEECTTSCCSSCCTTS------CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred eEECCCCCcccCcCCC------CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 3556666776654322 2478999999999998888899999999999999999998889999999999999999
Q ss_pred CccccCCCCcccccccccceeeecccccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCcc
Q 001226 153 YNSLSGKIPPQVSLCYSLESIGFHNNFLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLP 232 (1119)
Q Consensus 153 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp 232 (1119)
+|.+++..|..++++++|++|++++|.+++..+..++++++|++|++++|++++.. .|
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~----------------------~~ 147 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK----------------------LP 147 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC----------------------CC
T ss_pred CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC----------------------cc
Confidence 99999888999999999999999999999887888999999999999999887532 12
Q ss_pred ccccCCCCCcEEEccCCccCCccChhhhhcCCCcc--EEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccC
Q 001226 233 TSLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLE--VLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISH 310 (1119)
Q Consensus 233 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 310 (1119)
.+..+++|++|++++|+++ .+.+..|..+++|+ +|++++|++++..|..+.. .+|++|++++|. ..+..+..
T Consensus 148 -~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~ 221 (606)
T 3t6q_A 148 -KGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKG 221 (606)
T ss_dssp -TTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHH
T ss_pred -cccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhh
Confidence 2233777888888887776 44566677777777 7777777777666665543 567777777775 22334444
Q ss_pred CCCCcEEEcccccccc-----ccCcccCCCC--CCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcc
Q 001226 311 CNQLQVIALSRNNLVG-----QIPRSVGNLS--SLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNL 383 (1119)
Q Consensus 311 l~~L~~L~Ls~N~l~~-----~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l 383 (1119)
+.+++...+..+.+.+ ..+..+..+. +|+.|++++|.+++..+..|+.+++|++|++++|+++ .+|..+..+
T Consensus 222 l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l 300 (606)
T 3t6q_A 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300 (606)
T ss_dssp TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSC
T ss_pred ccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccc
Confidence 4444444433222211 1111222221 3444445544444444444444444444444444444 334444444
Q ss_pred cccceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceec
Q 001226 384 AKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLD 463 (1119)
Q Consensus 384 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 463 (1119)
++|++|++++|++++..|..+..+++|++|++++|.+. +.++...+..+++|++|+
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~------------------------~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR------------------------LELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC------------------------CBCCSSTTTTCTTCCEEE
T ss_pred ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc------------------------cccchhhhhccCcCCEEE
Confidence 44444444444444444444444444444444444444 333333333344444444
Q ss_pred cccceeeCcc--CCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCc-cccCCCCcceeeccCcc
Q 001226 464 LTGNSFYGPI--PANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPA-TLERNPGVSFLDVRGNL 540 (1119)
Q Consensus 464 L~~N~l~~~~--p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~l~~N~ 540 (1119)
+++|.+++.. |..+..+++|+.|++++|++++..|..+..+++|++|++++|++.+..|. .+..+++|+.|++++|+
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 4444444333 44555556666666666666656666666666666666666666655443 36666666677777776
Q ss_pred cCCCCCccccccccceEEeccCCcccCC---CCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccC
Q 001226 541 LQGSIPPVFGFWSNLTMLDFSENRLSGS---IPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSI 617 (1119)
Q Consensus 541 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 617 (1119)
+++..|..+..+++|++|+|++|++++. .+..+.++++|++|+|++|++++..|..|..+++|++|||++|++++..
T Consensus 437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCC
Confidence 6666666666677777777777776652 2345667777777777777777666777777777777777777777777
Q ss_pred ChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCcc
Q 001226 618 PSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIP 666 (1119)
Q Consensus 618 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 666 (1119)
|..+..++.| .|+|++|++++.+|..|..+++|+.|++++|++.+..+
T Consensus 517 ~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 7777777777 77777777777777777777777777777777665433
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.8e-57 Score=559.00 Aligned_cols=540 Identities=20% Similarity=0.211 Sum_probs=357.4
Q ss_pred cEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCcccccccccceeeeccc
Q 001226 99 LSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESIGFHNN 178 (1119)
Q Consensus 99 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 178 (1119)
..++.++..++ .+|..+.. ++++|+|++|+|++..|..++++++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 15 ~~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 36788888887 67877754 7999999999999888999999999999999999999888999999999999999999
Q ss_pred ccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCCccChh
Q 001226 179 FLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGGAISPW 258 (1119)
Q Consensus 179 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~~~~~~ 258 (1119)
.+++..|..|+++++|++|++++|++++.. |..++++++|++|++++|++.+...+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~-----------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSID-----------------------FIPLHNQKTLESLYLGSNHISSIKLPK 148 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGG-----------------------GSCCTTCTTCCEEECCSSCCCCCCCCT
T ss_pred cccccChhhhcccccccEeeccccCcccCC-----------------------cchhccCCcccEEECCCCcccccCccc
Confidence 999888999999999999999999887532 234566777777777777765432222
Q ss_pred hhhcCCCccEEEcCCCccCCCcchhhcCCCCCc--eeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCC
Q 001226 259 IFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQ--KLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLS 336 (1119)
Q Consensus 259 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 336 (1119)
+.++++|++|++++|++++..|..|..+++|+ +|++++|.+++..+..|.. ..|++|++++|. .++..+..+.
T Consensus 149 -~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~ 223 (606)
T 3t6q_A 149 -GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLK 223 (606)
T ss_dssp -TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTT
T ss_pred -ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhcc
Confidence 22366666666666666665566666666666 5666666666555554443 356666665554 1223333333
Q ss_pred CCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhccc--ccceeeccCccccCCCCccccccCcceEEE
Q 001226 337 SLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLA--KLEVLYLFNNRIEGAIPHQIGRMSKLVELA 414 (1119)
Q Consensus 337 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 414 (1119)
+++...+.-+.+. .+... .+ .+..+..+. +|+.|++++|.+++..+..|..+++|++|+
T Consensus 224 ~~~l~~l~~~~~~-----------~~~~~-----~i---~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 224 NSTIQSLWLGTFE-----------DMDDE-----DI---SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp TCEEEEEECCCCT-----------TSCCC-----CC---CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred ccchhheechhhc-----------ccccc-----cc---ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 3333322221111 11111 11 122333332 677777777777777777777777777777
Q ss_pred eecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCcccc
Q 001226 415 LYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFN 494 (1119)
Q Consensus 415 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~ 494 (1119)
+++|+++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+.+|..
T Consensus 285 l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~------------------ 344 (606)
T 3t6q_A 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTG------------------ 344 (606)
T ss_dssp CTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSS------------------
T ss_pred ccCCccC-CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchh------------------
Confidence 7777777 567777777777777777777764333 22234555555555555544333322
Q ss_pred CCCCccccccccccEEEeccCccccCC--CccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCc
Q 001226 495 GSFPIEIGKCSSLRRVILSNNLLQGSL--PATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSE 572 (1119)
Q Consensus 495 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 572 (1119)
.+..+++|++|++++|.+++.. |..+..+++|+.|++++|++.+..|..|..+++|++|+|++|++++..|..
T Consensus 345 -----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 345 -----CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp -----TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred -----hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 2555555666666666555443 555666666666666666666666666666677777777777776655443
Q ss_pred -cCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcccccc---CChhhhhcccCCeeEccCccCccCCCcccccc
Q 001226 573 -LGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGS---IPSEVISLEKMQSLSLQENNLSGAIPDAFSSV 648 (1119)
Q Consensus 573 -~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 648 (1119)
+.++++|++|++++|++.+..|..+..+++|++|+|++|++++. .+..+..+++|+.|+|++|++++..|.+|..+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 66777777777777777766677777777777777777777652 23557777777777777777777777777777
Q ss_pred ccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecccCC
Q 001226 649 QSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIP 715 (1119)
Q Consensus 649 ~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip 715 (1119)
++|++|+|++|++++.+|..+..+..+ .|++++|++++.+|..++.+++|+.|++++|++++..+
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L--~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI--YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC--EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCCCEEECCCCccCcCChhHhCccccc--EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 777776666666665555555555544 36666666666666666666667777777776665443
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-55 Score=563.59 Aligned_cols=488 Identities=22% Similarity=0.171 Sum_probs=254.7
Q ss_pred EEecCCCcccccCccchhhhccCCcccEEEcCCCcccCCCCcccccCCCccEEEcccccccccC-CccccccCccCEEEc
Q 001226 73 ALNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSI-PPEIFKLKRLSWLDL 151 (1119)
Q Consensus 73 ~l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-p~~l~~l~~L~~L~L 151 (1119)
..+++++++++++. ..+++++|||++|.+++..|..|+++++|++|+|++|.+.+.+ |.++.++++|++|+|
T Consensus 8 ~~dcs~~~L~~vP~-------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEESCCCSSCCCS-------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred EEEccCCCCCCCCC-------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 45667778887754 2368888999999888888888889999999999888665555 777888888888888
Q ss_pred cCccccCCCCcccccccccceeeecccccccccCcc--CCCcccccEEEeccccccccCCCCCccccceeeeeecccccc
Q 001226 152 GYNSLSGKIPPQVSLCYSLESIGFHNNFLNGELPND--ICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVG 229 (1119)
Q Consensus 152 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~ 229 (1119)
++|.+++..|..|+++++|++|+|++|.+++..|.. |+++++|++|+|++|++++..
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~--------------------- 139 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--------------------- 139 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC---------------------
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc---------------------
Confidence 888888877888888888888888888888766554 778888888888888776432
Q ss_pred CccccccCCCCCcEEEccCCccCCccChhhhhcC--CCccEEEcCCCccCCCcchhhcCCCC------Cceeeecccccc
Q 001226 230 SLPTSLSNCRNLVEFSASSNNFGGAISPWIFKGL--LQLEVLYLDDNNLEGQIPETLWGLEN------LQKLVLSANKLN 301 (1119)
Q Consensus 230 ~lp~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~Ls~N~l~ 301 (1119)
.+..++++++|++|++++|.+++.. +..|..+ ++|+.|++++|.+.+..|..+..+++ |++|++++|.++
T Consensus 140 -~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 140 -LHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp -CCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred -cchhHhhCCCCCEEECCCCcCCeeC-HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 2234566666666666666665332 3333433 55566666666555555554444433 555555555554
Q ss_pred ccCcccccCC---CCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCC--CCCcEEEcccCcCcccC
Q 001226 302 GTISGQISHC---NQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNC--GSLVDLRLQHNFIGGTI 376 (1119)
Q Consensus 302 ~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l--~~L~~L~L~~N~i~~~~ 376 (1119)
+..+..+... .+++.|.++.+.+... +..+.+.+.....|.++ ++|+.|++++|.+.+..
T Consensus 218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 218 VDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred hhHHHHHHhhcCcccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 4444333322 3344444432211100 01112222222222222 34444444444444444
Q ss_pred chhhhcccccceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccC
Q 001226 377 PPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHF 456 (1119)
Q Consensus 377 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l 456 (1119)
|..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i------------ 350 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI------------ 350 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC------------
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC------------
Confidence 44444444444444444444444444444444444444444444433344444444444444444443
Q ss_pred CccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeec
Q 001226 457 PYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDV 536 (1119)
Q Consensus 457 ~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 536 (1119)
++..+..+..+++|+.|+|++|.+++ + ..+++|+.|++++|+++ .+|.. ..+++.|++
T Consensus 351 -------------~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~l 408 (844)
T 3j0a_A 351 -------------AIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHL 408 (844)
T ss_dssp -------------CCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEEC
T ss_pred -------------CccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-ccccc---ccccceeec
Confidence 33333344444455555555555442 1 12445555555555555 22221 223344444
Q ss_pred cCcccCCCC-CccccccccceEEeccCCcccCCCCC-ccCCcccccEEEcccCccc-----CcCCcccccCCCCcEEecc
Q 001226 537 RGNLLQGSI-PPVFGFWSNLTMLDFSENRLSGSIPS-ELGNLENLQILRLSANKLD-----GRIPYELGKCTKMIKLDLS 609 (1119)
Q Consensus 537 ~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls 609 (1119)
++|++++.. +..+..+++|++|+|++|++++..+. .+..+++|+.|+|++|+++ +..|..|..+++|+.|||+
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 444443211 11122344444444444444432222 2233444444444444443 1222334444444444444
Q ss_pred CccccccCChhhhhcccCCeeEccCccCcc
Q 001226 610 DNYLAGSIPSEVISLEKMQSLSLQENNLSG 639 (1119)
Q Consensus 610 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 639 (1119)
+|+|++.+|..+..+++|+.|+|++|+|++
T Consensus 489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp HHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred CCcccccChhHccchhhhheeECCCCCCCc
Confidence 444444444444444444444444444443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-55 Score=544.02 Aligned_cols=537 Identities=20% Similarity=0.144 Sum_probs=421.3
Q ss_pred EEecCCCcccccCccchhhhccCCcccEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEcc
Q 001226 73 ALNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLG 152 (1119)
Q Consensus 73 ~l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls 152 (1119)
.+++++.+++.++... .+++++|+|++|.+++..+..|+++++|++|+|++|++++..|..+.++++|++|+|+
T Consensus 15 ~~~c~~~~l~~ip~~~------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDI------PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp EEECTTSCCSSCCTTS------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEccCCCcccCCCCC------CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 5677788888765532 2789999999999998888899999999999999999998889999999999999999
Q ss_pred CccccCCCCcccccccccceeeecccccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCcc
Q 001226 153 YNSLSGKIPPQVSLCYSLESIGFHNNFLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLP 232 (1119)
Q Consensus 153 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp 232 (1119)
+|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|++++. .+|
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------------~lp 146 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC----------------------KLP 146 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC----------------------CCC
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccce----------------------ech
Confidence 9999988899999999999999999999988888899999999999999988742 356
Q ss_pred ccccCCCCCcEEEccCCccCCccChhhhhcCCCcc----EEEcCCCccCCCcchhhcCCCCCceeeecccccc-ccCccc
Q 001226 233 TSLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLE----VLYLDDNNLEGQIPETLWGLENLQKLVLSANKLN-GTISGQ 307 (1119)
Q Consensus 233 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~~~~ 307 (1119)
..++++++|++|++++|++++ +.+..|..+++|+ +|++++|++++..+..+... +|++|++++|.++ +..+..
T Consensus 147 ~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~ 224 (606)
T 3vq2_A 147 AYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTC 224 (606)
T ss_dssp GGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHH
T ss_pred HhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHH
Confidence 778888999999999888874 4455566555554 78888888886666555544 7888888888876 456677
Q ss_pred ccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEc-ccCcCcccCchhhhccccc
Q 001226 308 ISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRL-QHNFIGGTIPPEICNLAKL 386 (1119)
Q Consensus 308 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L-~~N~i~~~~~~~l~~l~~L 386 (1119)
+..++.|+.+++..+.+.+.. .+.. +....+..+..+ +++.+++ ..|.+.+.+|. +..+++|
T Consensus 225 ~~~l~~L~~l~l~~~~~~~~~--------~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L 287 (606)
T 3vq2_A 225 LQNLAGLHVHRLILGEFKDER--------NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANV 287 (606)
T ss_dssp HHTTTTCEEEEEEEECCTTSC--------CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTC
T ss_pred hccccccccccccccccccCC--------cccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCC
Confidence 788888888877665544210 1110 001111222222 4555666 55566666555 6667777
Q ss_pred ceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceecccc
Q 001226 387 EVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTG 466 (1119)
Q Consensus 387 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~ 466 (1119)
+.|++++|.++. +| .+..+++|++|++++|++ +.+| .+ .+++|+.|++++|+..+.. .+..+++|++|++++
T Consensus 288 ~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 288 SAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSR 359 (606)
T ss_dssp SEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCS
T ss_pred CEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch---hhccCCCCCEEECcC
Confidence 777777777753 34 566777777777777777 3566 34 7777777777777544333 223567777777777
Q ss_pred ceeeCc--cCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCC-ccccCCCCcceeeccCcccCC
Q 001226 467 NSFYGP--IPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLP-ATLERNPGVSFLDVRGNLLQG 543 (1119)
Q Consensus 467 N~l~~~--~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~ 543 (1119)
|.+++. +|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|++++
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 777765 36677778888888888888874 66778888899999999999888777 688889999999999999988
Q ss_pred CCCccccccccceEEeccCCcccC-CCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhh
Q 001226 544 SIPPVFGFWSNLTMLDFSENRLSG-SIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVI 622 (1119)
Q Consensus 544 ~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 622 (1119)
..|..+..+++|++|+|++|++++ .+|..|+++++|++|+|++|++++..|..+..+++|++|+|++|++++.+|..+.
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 888889999999999999999987 4788999999999999999999988888899999999999999999988899999
Q ss_pred hcccCCeeEccCccCccCCCccccccc-cccEeecCCcccCCCcc
Q 001226 623 SLEKMQSLSLQENNLSGAIPDAFSSVQ-SLFELQLGSNIFDGSIP 666 (1119)
Q Consensus 623 ~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p 666 (1119)
.+++|+.|+|++|+|+ .+|..+..++ +|+.|++++|++.+..+
T Consensus 519 ~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 519 QLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999999998 6777788887 59999999999986544
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-55 Score=545.96 Aligned_cols=539 Identities=19% Similarity=0.186 Sum_probs=461.3
Q ss_pred cEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCcccccccccceeeeccc
Q 001226 99 LSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESIGFHNN 178 (1119)
Q Consensus 99 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 178 (1119)
.+++.++++++ .+|..+. ++|++|+|++|++++..+..+.++++|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 46899999998 6787665 78999999999999888889999999999999999999888999999999999999999
Q ss_pred ccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCCccChh
Q 001226 179 FLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGGAISPW 258 (1119)
Q Consensus 179 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~~~~~~ 258 (1119)
.+++..|..|+++++|++|++++|++++..+ ..++++++|++|++++|.+.+...+.
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~n~l~~~~lp~ 147 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLES-----------------------FPIGQLITLKKLNVAHNFIHSCKLPA 147 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSS-----------------------SCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred cccccChhhcCCcccCCEEEccCCccccccc-----------------------cccCCCCCCCEEeCCCCcccceechH
Confidence 9999999999999999999999999885432 45788889999999999887544466
Q ss_pred hhhcCCCccEEEcCCCccCCCcchhhcCCCCCc----eeeeccccccccCcccccCCCCCcEEEccccccc-cccCcccC
Q 001226 259 IFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQ----KLVLSANKLNGTISGQISHCNQLQVIALSRNNLV-GQIPRSVG 333 (1119)
Q Consensus 259 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~ 333 (1119)
.|.++++|++|++++|++++..|..|..+++|+ +|++++|.++++.+..+... +|++|++++|.++ +..|..+.
T Consensus 148 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~ 226 (606)
T 3vq2_A 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQ 226 (606)
T ss_dssp GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHH
T ss_pred hHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhc
Confidence 788888888888888888887787777766655 78888888887777666665 7888888888876 45666777
Q ss_pred CCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeec-cCccccCCCCccccccCcceE
Q 001226 334 NLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYL-FNNRIEGAIPHQIGRMSKLVE 412 (1119)
Q Consensus 334 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L-~~N~l~~~~~~~~~~l~~L~~ 412 (1119)
++++|+.+++..+.+.+. ..+.. +....+..+..+ .++.+++ ..|.+.+.+|. +..+++|+.
T Consensus 227 ~l~~L~~l~l~~~~~~~~--------~~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~ 289 (606)
T 3vq2_A 227 NLAGLHVHRLILGEFKDE--------RNLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSA 289 (606)
T ss_dssp TTTTCEEEEEEEECCTTS--------CCCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSE
T ss_pred cccccccccccccccccC--------Ccccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCE
Confidence 888888877766554421 11110 111222333333 5777787 77888888887 999999999
Q ss_pred EEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCcc
Q 001226 413 LALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNR 492 (1119)
Q Consensus 413 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~ 492 (1119)
|++++|.++ .+| .+..+++|+.|++++|++ +.+| .+ .++.|++|++++|+..+.+ .+..+++|+.|++++|+
T Consensus 290 L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 290 MSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA 361 (606)
T ss_dssp EEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred EEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence 999999997 566 899999999999999999 5777 34 7999999999999665444 56789999999999999
Q ss_pred ccCC--CCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCC-ccccccccceEEeccCCcccCCC
Q 001226 493 FNGS--FPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIP-PVFGFWSNLTMLDFSENRLSGSI 569 (1119)
Q Consensus 493 l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~ 569 (1119)
+++. .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|++++..
T Consensus 362 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp EEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred cCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence 9876 48889999999999999999986 66899999999999999999999888 68999999999999999999999
Q ss_pred CCccCCcccccEEEcccCcccC-cCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCcccccc
Q 001226 570 PSELGNLENLQILRLSANKLDG-RIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSV 648 (1119)
Q Consensus 570 p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 648 (1119)
|..|.++++|++|++++|++.+ .+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++.+|..|..+
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence 9999999999999999999997 479999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEeecCCcccCCCccccchhhccccceeeeccccccCCcc
Q 001226 649 QSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIP 691 (1119)
Q Consensus 649 ~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p 691 (1119)
++|+.|+|++|+++ .+|..+..++..++.|++++|++++..+
T Consensus 521 ~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 521 YSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999998 7888888887656779999999997655
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-55 Score=546.57 Aligned_cols=517 Identities=21% Similarity=0.282 Sum_probs=307.7
Q ss_pred CcHHHHHHHHhcCCCCCCC--------CCCCCCCCCCCCCcee---eeeeeecCCCceEEEecCCCcccccCccchhhhc
Q 001226 25 PSAISLVQFLDSLPKQSQS--------HLPWNQSVSTSAPCKW---SGVSCYNNSSSLKALNLSGFGLSGVLNNSISYIC 93 (1119)
Q Consensus 25 ~~~~~ll~~~~~~~~~~~~--------~~~w~~~~~~~~~c~w---~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~~~ 93 (1119)
.|+.||.+||+++.++... ..+|+. +++||.| .||+|+.. +||+.|+|++++++|.+|+. ++
T Consensus 30 ~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~---l~ 102 (636)
T 4eco_A 30 KDYLALKEIWDALNGKNWSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDA---IG 102 (636)
T ss_dssp HHHHHHHHHHHHTTGGGCCCCC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGG---GG
T ss_pred HHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChH---Hh
Confidence 4688999999998765322 236874 3689999 99999865 89999999999999998854 56
Q ss_pred cCCcccEEEcCCCcc------cC------CCCcccccCCCccEEEcccccccccCCccccc-cCccCEEEccCccccCCC
Q 001226 94 KNQHLLSLDLSGNEF------TG------SIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFK-LKRLSWLDLGYNSLSGKI 160 (1119)
Q Consensus 94 ~l~~l~~L~Ls~n~~------~~------~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~ 160 (1119)
++++|++|||++|.+ .| .+|... +..|+ +++++|.+.+.+|..++. +.++..+++....+...
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 178 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS- 178 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC-
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccc-
Confidence 889999999999976 33 444444 56677 888888888877777764 44555555555443311
Q ss_pred Ccccccccccceeee--cccccccccCccCCCcccccEEEecccccccc-CCC-CCccccceeeeeeccccccCcccccc
Q 001226 161 PPQVSLCYSLESIGF--HNNFLNGELPNDICSLPKLKSLYLNTNNLTGL-LPE-FPNSCAILHLLIHENDFVGSLPTSLS 236 (1119)
Q Consensus 161 p~~l~~l~~L~~L~L--~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~-~~~~~~l~~l~l~~n~~~~~lp~~l~ 236 (1119)
....++.+.+ .+|++++ +|..|+++++|++|+|++|++++. ++. +... ..+...+.+|..++
T Consensus 179 -----~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~--------~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 179 -----SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE--------NSEYAQQYKTEDLK 244 (636)
T ss_dssp -----CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT--------TSHHHHHHTTSCCC
T ss_pred -----cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc--------ccchhcccCchhhh
Confidence 1122333333 3678888 899999999999999999999873 111 0000 00111122455555
Q ss_pred --CCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCc-cCC-CcchhhcCCCCCceeeeccccccccCcccccCCC
Q 001226 237 --NCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNN-LEG-QIPETLWGLENLQKLVLSANKLNGTISGQISHCN 312 (1119)
Q Consensus 237 --~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 312 (1119)
++++|++|++++|++.+.++ ..|.++++|++|+|++|+ +++ .+|..+..+. .+..++
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~------------------~~~~l~ 305 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALA------------------DAPVGE 305 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH------------------HSGGGG
T ss_pred hcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhh------------------ccccCC
Confidence 55555555555555444332 334444444444444444 444 4444444330 000115
Q ss_pred CCcEEEccccccccccCc--ccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccc-ccee
Q 001226 313 QLQVIALSRNNLVGQIPR--SVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAK-LEVL 389 (1119)
Q Consensus 313 ~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~-L~~L 389 (1119)
+|++|+|++|+++ .+|. .++++++|++|++++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 5555555555555 4554 55555555555555555555555 5555555555555555555 55555555655 6666
Q ss_pred eccCccccCCCCccccccC--cceEEEeecccccccCCcccc-------CCCCcCEEEccCccCcccchhhhhccCCccc
Q 001226 390 YLFNNRIEGAIPHQIGRMS--KLVELALYNNRLTGRIPPDIT-------RLRNLQFLSLAHNHLTGEVALELGKHFPYLS 460 (1119)
Q Consensus 390 ~L~~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~ 460 (1119)
++++|+++ .+|..+..++ +|++|++++|++++.+|..+. .+++|+.|+|++|+++ .+|..++..++.|+
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLS 460 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCS
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCC
Confidence 66666665 4455554433 566666666666666666555 5666667777777666 45555555566666
Q ss_pred eeccccceeeCccCCcccc--------ccccceeeccCccccCCCCcccc--ccccccEEEeccCccccCCCccccCCCC
Q 001226 461 RLDLTGNSFYGPIPANICV--------GTNLFVLVLGNNRFNGSFPIEIG--KCSSLRRVILSNNLLQGSLPATLERNPG 530 (1119)
Q Consensus 461 ~L~L~~N~l~~~~p~~~~~--------~~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 530 (1119)
+|+|++|+++ .+|..... +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++
T Consensus 461 ~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 461 SINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537 (636)
T ss_dssp EEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred EEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence 6666666666 44433222 114555555555554 3444443 44555555555555543 4444444444
Q ss_pred cceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccC
Q 001226 531 VSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSD 610 (1119)
Q Consensus 531 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 610 (1119)
|+.|++++|+ ++++|++.+.+|..|+++++|++|+|++|++ +.+|..+. ++|+.|||++
T Consensus 538 L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~ 596 (636)
T 4eco_A 538 LKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKD 596 (636)
T ss_dssp CCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCS
T ss_pred CCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcC
Confidence 4444444433 3356667777777777777777777777777 46666654 6777777777
Q ss_pred cccc
Q 001226 611 NYLA 614 (1119)
Q Consensus 611 N~l~ 614 (1119)
|++.
T Consensus 597 N~l~ 600 (636)
T 4eco_A 597 NPNI 600 (636)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 7665
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-53 Score=546.26 Aligned_cols=531 Identities=21% Similarity=0.195 Sum_probs=376.0
Q ss_pred ceeeeeeeecCCCceEEEecCCCcccccCccchhhhccCCcccEEEcCCCcccCCC-CcccccCCCccEEEccccccccc
Q 001226 57 CKWSGVSCYNNSSSLKALNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTGSI-PKQLGNCGQLKTLLLNDNRFQGS 135 (1119)
Q Consensus 57 c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~~~-~~~l~~l~~L~~L~L~~n~i~~~ 135 (1119)
|+|+.|.+ ...+++.|+|+++.+++..+.. +..+++|++|||++|.+.+.+ |..|+++++|++|+|++|++++.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~---~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASS---FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSS---CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhH---CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 67888888 4578999999999999887654 568899999999999777666 78899999999999999999999
Q ss_pred CCccccccCccCEEEccCccccCCCCcc--cccccccceeeecccccccccC-ccCCCcccccEEEeccccccccCCCCC
Q 001226 136 IPPEIFKLKRLSWLDLGYNSLSGKIPPQ--VSLCYSLESIGFHNNFLNGELP-NDICSLPKLKSLYLNTNNLTGLLPEFP 212 (1119)
Q Consensus 136 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~ 212 (1119)
.|..++++++|++|+|++|.+++.+|.. ++++++|++|+|++|.+++..+ ..|+++++|++|++++|++++..
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~---- 164 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC---- 164 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC----
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC----
Confidence 9999999999999999999999877765 9999999999999999998765 57999999999999999988543
Q ss_pred ccccceeeeeeccccccCccccccCC--CCCcEEEccCCccCCccChhhhhcCC------CccEEEcCCCccCCCcchhh
Q 001226 213 NSCAILHLLIHENDFVGSLPTSLSNC--RNLVEFSASSNNFGGAISPWIFKGLL------QLEVLYLDDNNLEGQIPETL 284 (1119)
Q Consensus 213 ~~~~l~~l~l~~n~~~~~lp~~l~~l--~~L~~L~l~~n~i~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~p~~l 284 (1119)
+..+..+ ++|+.|+++.|.+.+.++.. +..+. .|++|++++|++++..+..+
T Consensus 165 -------------------~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 165 -------------------EHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp -------------------SGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred -------------------HHHcccccCCccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 3455555 78999999999998755432 33333 49999999999998888887
Q ss_pred cCC---CCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCC--CCCCeEEccCCcccCCCCCCCCCC
Q 001226 285 WGL---ENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNL--SSLNSLLLFNNRLQGTLPPELGNC 359 (1119)
Q Consensus 285 ~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~l~~l 359 (1119)
... .+++.|.++.+.+.. ++..+.+.+..+..|..+ ++|+.|++++|.+++..+..|..+
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~---------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGA---------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBC---------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred HhhcCcccccceecccccccc---------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 653 678888887554431 122334443444445444 567777777777776667777777
Q ss_pred CCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEc
Q 001226 360 GSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSL 439 (1119)
Q Consensus 360 ~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 439 (1119)
++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|+|
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 77777777777777776777777777777777777777777777777777777777777777666666777777777777
Q ss_pred cCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCC-CccccccccccEEEeccCccc
Q 001226 440 AHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSF-PIEIGKCSSLRRVILSNNLLQ 518 (1119)
Q Consensus 440 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~ 518 (1119)
++|.+++. + .++.|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+.++++|+.|+|++|+++
T Consensus 370 s~N~l~~i-~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 370 RDNALTTI-H-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp ETCCSCCC-S-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCCCcc-c-----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 77777632 1 1566666777766665 33332 345666666666666421 122345566666666666665
Q ss_pred cCCCc-cccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCccc
Q 001226 519 GSLPA-TLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYEL 597 (1119)
Q Consensus 519 ~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 597 (1119)
+..+. .+..+++|+.|++++|.+++..+ .+..|..|.++++|+.|+|++|++++..|..|
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~-------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 500 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWE-------------------TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCC-------------------SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS
T ss_pred ccccccccccCCccccccCCCCccccccc-------------------cccchhhhcCcccccEEECCCCcccccChhHc
Confidence 43322 23334444444444444431111 02334556666666666666666666666666
Q ss_pred ccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCc
Q 001226 598 GKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSI 665 (1119)
Q Consensus 598 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 665 (1119)
..+++|+.|||++|+|++..|..+. ++|+.|+|++|+|++.+|+.|. +|+.|++++|++...-
T Consensus 501 ~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 501 SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICEC 563 (844)
T ss_dssp SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSS
T ss_pred cchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccc
Confidence 6666666666666666654444443 5677777777777766666654 5667777777776543
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.6e-54 Score=537.98 Aligned_cols=526 Identities=19% Similarity=0.217 Sum_probs=301.1
Q ss_pred CCcHHHHHHHHhcCCCCCCCCCCCCCCC--CCCCC--cee------------eeeeeecCCCceEEEecCCCcccccCcc
Q 001226 24 PPSAISLVQFLDSLPKQSQSHLPWNQSV--STSAP--CKW------------SGVSCYNNSSSLKALNLSGFGLSGVLNN 87 (1119)
Q Consensus 24 ~~~~~~ll~~~~~~~~~~~~~~~w~~~~--~~~~~--c~w------------~gv~C~~~~~~v~~l~l~~~~l~~~~~~ 87 (1119)
.+|+.||++||+++.++ +|+.+. ...+| |+| .||+|+. .+||+.|+|+++++.|.+|+
T Consensus 268 ~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 268 IKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECG
T ss_pred hHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCch
Confidence 45789999999999664 887543 01345 999 9999986 58999999999999999985
Q ss_pred chhhhccCCcccEEEc-CCCcccCCCCcccccC----CCcc--EE---------Ec-cccccccc-----------CCcc
Q 001226 88 SISYICKNQHLLSLDL-SGNEFTGSIPKQLGNC----GQLK--TL---------LL-NDNRFQGS-----------IPPE 139 (1119)
Q Consensus 88 ~~~~~~~l~~l~~L~L-s~n~~~~~~~~~l~~l----~~L~--~L---------~L-~~n~i~~~-----------~p~~ 139 (1119)
. ++++++|++||| ++|.++|..|...... ...+ .+ +. ....+.+. .+..
T Consensus 342 ~---l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 342 A---IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp G---GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred H---HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 4 568899999999 9999988744331111 0000 00 00 00011100 0111
Q ss_pred ccccCccCEEEccC--ccccCCCCcccccccccceeeecccccccc-cCccCCCcccccEEEeccccccccCCCCCcccc
Q 001226 140 IFKLKRLSWLDLGY--NSLSGKIPPQVSLCYSLESIGFHNNFLNGE-LPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCA 216 (1119)
Q Consensus 140 l~~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 216 (1119)
......++.+.++. |++++ +|..++++++|++|+|++|.++++ ++..... .+.|.++
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~--------~s~n~~~----------- 478 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED--------ANSDYAK----------- 478 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC--------TTSHHHH-----------
T ss_pred cccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc--------ccccccc-----------
Confidence 12233445555544 78887 788888888888888888888872 2211111 0112221
Q ss_pred ceeeeeeccccccCcccccc--CCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCc-cCC-CcchhhcCCCCCce
Q 001226 217 ILHLLIHENDFVGSLPTSLS--NCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNN-LEG-QIPETLWGLENLQK 292 (1119)
Q Consensus 217 l~~l~l~~n~~~~~lp~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~ 292 (1119)
+.+|..++ ++++|++|++++|++.+.++ ..|.++++|++|+|++|+ +++ .+|..+..++
T Consensus 479 ------------g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~---- 541 (876)
T 4ecn_A 479 ------------QYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLA---- 541 (876)
T ss_dssp ------------HHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH----
T ss_pred ------------ccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhh----
Confidence 23333433 44444444444444333322 334444555555555554 554 4555444332
Q ss_pred eeeccccccccCcccccCCCCCcEEEccccccccccCc--ccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccC
Q 001226 293 LVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPR--SVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHN 370 (1119)
Q Consensus 293 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 370 (1119)
..+..+++|++|+|++|+++ .+|. .++++++|+.|+|++|+++ .+| .|+.+++|+.|+|++|
T Consensus 542 -------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 542 -------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp -------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSS
T ss_pred -------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCC
Confidence 01222335555555555555 4454 5555555555555555555 444 5555555666666666
Q ss_pred cCcccCchhhhcccc-cceeeccCccccCCCCccccccCc--ceEEEeecccccccCCcc---cc--CCCCcCEEEccCc
Q 001226 371 FIGGTIPPEICNLAK-LEVLYLFNNRIEGAIPHQIGRMSK--LVELALYNNRLTGRIPPD---IT--RLRNLQFLSLAHN 442 (1119)
Q Consensus 371 ~i~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~---~~--~l~~L~~L~L~~N 442 (1119)
+++ .+|..+..+++ |+.|+|++|+++ .+|..+..++. |+.|++++|++++.+|.. +. .+++|+.|+|++|
T Consensus 606 ~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 606 QIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred ccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 555 55555555555 666666666665 44555554433 666666666666544321 12 3346777777777
Q ss_pred cCcccchhhhhccCCccceeccccceeeCccCCccccc--------cccceeeccCccccCCCCcccc--ccccccEEEe
Q 001226 443 HLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVG--------TNLFVLVLGNNRFNGSFPIEIG--KCSSLRRVIL 512 (1119)
Q Consensus 443 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~--------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L 512 (1119)
+++ .+|..++..++.|+.|+|++|+++ .+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.|+|
T Consensus 684 ~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 684 EIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDV 760 (876)
T ss_dssp CCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEEC
T ss_pred cCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEe
Confidence 776 566666666677777777777776 444433321 24555555555555 4444444 4555555555
Q ss_pred ccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCc
Q 001226 513 SNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGR 592 (1119)
Q Consensus 513 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 592 (1119)
++|++++ +|..+..+++|+.|+|++|+ ++++|++.+.+|..|.++++|+.|+|++|++ +.
T Consensus 761 s~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~ 820 (876)
T 4ecn_A 761 SYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RK 820 (876)
T ss_dssp CSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred CCCCCCc-cchhhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-Cc
Confidence 5555554 34444444444444444443 3445677777777777777777777777777 46
Q ss_pred CCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCc
Q 001226 593 IPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLS 638 (1119)
Q Consensus 593 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 638 (1119)
+|..+. ++|+.|||++|++....+..+.....+..+.|.+|++.
T Consensus 821 Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 821 VDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred cCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 776654 47777777777776555566655556666666666654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-50 Score=498.37 Aligned_cols=513 Identities=21% Similarity=0.162 Sum_probs=369.8
Q ss_pred EecCCCcccccCccchhhhccCCcccEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEccC
Q 001226 74 LNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGY 153 (1119)
Q Consensus 74 l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~ 153 (1119)
+++++.+++.++... .+++++|||++|.+++..+..|.++++|++|+|++|++++..|..++++++|++|+|++
T Consensus 12 ~~c~~~~l~~ip~~l------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 12 YQCMELNFYKIPDNL------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp EECCSSCCSSCCSSS------CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred EEeCCCCccccCCCc------cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 455555666544311 14566677777766665566666666666666666666655555666666666666666
Q ss_pred ccccCCCCcccccccccceeeecccccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccc
Q 001226 154 NSLSGKIPPQVSLCYSLESIGFHNNFLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPT 233 (1119)
Q Consensus 154 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~ 233 (1119)
|.+++..|..|+++++|++|++++|.+++..+..++++++|++|+++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~--------------------------------- 132 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA--------------------------------- 132 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC---------------------------------
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC---------------------------------
Confidence 66665444555555555555555555444433344444444444444
Q ss_pred cccCCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCC----ceeeeccccccccCccccc
Q 001226 234 SLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENL----QKLVLSANKLNGTISGQIS 309 (1119)
Q Consensus 234 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~Ls~N~l~~~~~~~~~ 309 (1119)
+|.+.+.-.+..|.++++|++|++++|++++..|..+..+++| ++|++++|.++++.+..|.
T Consensus 133 --------------~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 133 --------------HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp --------------SSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred --------------CCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhc
Confidence 4444332224556778889999999999988888888888888 7888999988888887777
Q ss_pred CCCCCcEEEcccccccc-ccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhccc--cc
Q 001226 310 HCNQLQVIALSRNNLVG-QIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLA--KL 386 (1119)
Q Consensus 310 ~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~--~L 386 (1119)
.+ +|++|++++|.... .++..+..+++++.+.+....+.. ..+++ .+. ...+..++ .+
T Consensus 199 ~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~--~~~--------~~~~~~l~~l~l 259 (570)
T 2z63_A 199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLE--KFD--------KSALEGLCNLTI 259 (570)
T ss_dssp TC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCE--ECC--------TTTTGGGGGSEE
T ss_pred cC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhh--hcc--------hhhhccccccch
Confidence 66 78888888875432 345556677777766655433221 11111 111 11222222 35
Q ss_pred ceeeccCc-cccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccc
Q 001226 387 EVLYLFNN-RIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLT 465 (1119)
Q Consensus 387 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 465 (1119)
+.+++++| .+.+..|..+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.++ .+|. ..++.|+.|+++
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~ 333 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFT 333 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEE
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCc
Confidence 66667666 666677777777778888888888777 567777777 7888888888776 4443 356778888888
Q ss_pred cceeeCccCCccccccccceeeccCccccCCC--CccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCC
Q 001226 466 GNSFYGPIPANICVGTNLFVLVLGNNRFNGSF--PIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQG 543 (1119)
Q Consensus 466 ~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 543 (1119)
+|.+.+..+. ..+++|+.|++++|++++.. |..+.++++|++|++++|.+.+..+. +..+++|+.|++++|++.+
T Consensus 334 ~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 334 SNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp SCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES
T ss_pred CCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc
Confidence 8877766554 56788888888888887543 67788889999999999998865554 8889999999999999987
Q ss_pred CCC-ccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCccc-CcCCcccccCCCCcEEeccCccccccCChhh
Q 001226 544 SIP-PVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLD-GRIPYELGKCTKMIKLDLSDNYLAGSIPSEV 621 (1119)
Q Consensus 544 ~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 621 (1119)
..| ..+..+++|++|++++|++++..|..|.++++|++|+|++|++. +.+|..+..+++|++|+|++|++++..|..+
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 766 57888999999999999999888999999999999999999997 5789999999999999999999998889999
Q ss_pred hhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccc
Q 001226 622 ISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPC 667 (1119)
Q Consensus 622 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 667 (1119)
..+++|++|+|++|++++.+|..|..+++|+.|++++|++++..|.
T Consensus 491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999999988888899999999999999999887764
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-50 Score=495.60 Aligned_cols=499 Identities=20% Similarity=0.203 Sum_probs=432.8
Q ss_pred CccccccCCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCccccc
Q 001226 230 SLPTSLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQIS 309 (1119)
Q Consensus 230 ~lp~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 309 (1119)
.+|..+. +++++|++++|+++ .+.+..|.++++|++|+|++|++++..|.+|.++++|++|+|++|++++..+..|.
T Consensus 21 ~ip~~l~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 21 KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SCCSSSC--SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCcc--ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 3444432 47899999999987 45677889999999999999999988888999999999999999999998889999
Q ss_pred CCCCCcEEEccccccccccCcccCCCCCCCeEEccCCcccC-CCCCCCCCCCCCcEEEcccCcCcccCchhhhccccc--
Q 001226 310 HCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQG-TLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKL-- 386 (1119)
Q Consensus 310 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L-- 386 (1119)
.+++|++|++++|++++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..+..+..+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 99999999999999997666679999999999999999986 368899999999999999999998888889999888
Q ss_pred --ceeeccCccccCCCCccccccCcceEEEeecccccc-cCCccccCCCCcCEEEccCccCcc-----cchhhhhccCC-
Q 001226 387 --EVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTG-RIPPDITRLRNLQFLSLAHNHLTG-----EVALELGKHFP- 457 (1119)
Q Consensus 387 --~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~l~- 457 (1119)
+.|++++|.+++..|..+... +|+.|++++|.... .++..+..+++++.+.+..+.+.. .++...+..++
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 899999999998888888766 89999999986442 345567778888777665443321 12222222333
Q ss_pred -ccceeccccc-eeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceee
Q 001226 458 -YLSRLDLTGN-SFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLD 535 (1119)
Q Consensus 458 -~L~~L~L~~N-~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 535 (1119)
.++.+++++| .+.+.+|..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|+
T Consensus 257 l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~ 331 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLT 331 (570)
T ss_dssp SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEE
T ss_pred cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEe
Confidence 3677888888 889999999999999999999999999 688889998 9999999999998 5555 5789999999
Q ss_pred ccCcccCCCCCccccccccceEEeccCCcccCCC--CCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccc
Q 001226 536 VRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSI--PSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYL 613 (1119)
Q Consensus 536 l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 613 (1119)
+++|.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|++++|++.+. |..+..+++|++|++++|++
T Consensus 332 l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l 408 (570)
T 2z63_A 332 FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNL 408 (570)
T ss_dssp EESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEE
T ss_pred CcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCcc
Confidence 999999877665 78899999999999998654 78899999999999999999954 44599999999999999999
Q ss_pred cccCC-hhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccC-CCccccchhhccccceeeeccccccCCcc
Q 001226 614 AGSIP-SEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFD-GSIPCSLSKLHHFSSILNVSNNKLSGKIP 691 (1119)
Q Consensus 614 ~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~~~~~L~ls~N~l~~~~p 691 (1119)
++..| ..+..+++|++|++++|++++.+|..|..+++|++|+|++|.++ +.+|..+..++.+. .|++++|++++..|
T Consensus 409 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~-~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSP 487 (570)
T ss_dssp ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-EEECTTSCCCEECT
T ss_pred ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC-EEECCCCccccCCh
Confidence 98766 57889999999999999999999999999999999999999998 68998888888764 69999999999889
Q ss_pred cccccccccceeeccCceecccCCccccccccceEEecccccccccCCCc
Q 001226 692 ECLGNLDKLQILDLSSNSFSGEIPTEVNNMVSLYFVNISFNHFSGKLPAS 741 (1119)
Q Consensus 692 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~l~~l~ls~N~~~g~~p~~ 741 (1119)
..|+++++|++|+|++|++++.+|..+..+++|+.+++++|+++|.+|..
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99999999999999999999888888999999999999999999999963
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-50 Score=492.95 Aligned_cols=494 Identities=19% Similarity=0.235 Sum_probs=294.1
Q ss_pred CceeeeeeeecCCCceEEEecCCCcccccCccchhhhccCCcccEEEcCCCcccCCCCcccccCCCccEEEccccccccc
Q 001226 56 PCKWSGVSCYNNSSSLKALNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGS 135 (1119)
Q Consensus 56 ~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 135 (1119)
.|.|.|| |+- ++++++.+++.. .++|++|+|++|.+++..|..|+++++|++|+|++|++++.
T Consensus 3 ~C~~~~~-c~~----------~~~~l~~ip~~~------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFTSIPSGL------TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp EECTTSE-EEC----------TTSCCSSCCSCC------CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE
T ss_pred cCCCCce-EEC----------CCCccccccccC------CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc
Confidence 5999999 963 345565544321 26788888888888877778888888888888888888877
Q ss_pred CCccccccCccCEEEccCccccCCCCcccccccccceeeecccccccc-cCccCCCcccccEEEeccccccccCCCCCcc
Q 001226 136 IPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESIGFHNNFLNGE-LPNDICSLPKLKSLYLNTNNLTGLLPEFPNS 214 (1119)
Q Consensus 136 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 214 (1119)
.|..++.+++|++|||++|.+++..|..++++++|++|++++|.+++. .|..++++++|++|++++|++.
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~--------- 136 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF--------- 136 (549)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC---------
T ss_pred ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc---------
Confidence 777888888888888888888866666677777777777777776652 4556666666666666666532
Q ss_pred ccceeeeeeccccccCccccccCCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceee
Q 001226 215 CAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLV 294 (1119)
Q Consensus 215 ~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 294 (1119)
+.+++..|.++++|++|++++|++++..|..+..+++|++|+
T Consensus 137 --------------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 137 --------------------------------------SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp --------------------------------------CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred --------------------------------------cccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 222233444455555566666666655666666666666666
Q ss_pred eccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcc
Q 001226 295 LSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGG 374 (1119)
Q Consensus 295 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~ 374 (1119)
+++|.+.......+..+++|++|++++|++++.... .......+++|+.|++++|.+++
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccCcccccchhhHhhcccccEEEccCCcccccccc---------------------ccchhhhhhcccceeccccccch
Confidence 666655533333334455555555555555432100 00011123334444444444433
Q ss_pred cCch----hhhcccccceeeccCccccCCC------CccccccCcceEEEeeccccccc-----CCccccCCCCcCEEEc
Q 001226 375 TIPP----EICNLAKLEVLYLFNNRIEGAI------PHQIGRMSKLVELALYNNRLTGR-----IPPDITRLRNLQFLSL 439 (1119)
Q Consensus 375 ~~~~----~l~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L 439 (1119)
..+. .+..+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+... .+..+....+|+.|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 2222 1223344444444444443321 11223344445555555443311 1111122234444444
Q ss_pred cCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCcccc
Q 001226 440 AHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQG 519 (1119)
Q Consensus 440 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 519 (1119)
++|+++ .+|..++..+++|++|++++|++++.+|.. +..++.+++|+.|++++|++++
T Consensus 318 ~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~~ 375 (549)
T 2z81_A 318 ENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN---------------------SACKGAWPSLQTLVLSQNHLRS 375 (549)
T ss_dssp ESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHH---------------------HTCTTSSTTCCEEECTTSCCCC
T ss_pred ccCccc-cCCHHHHhcCccccEEEccCCccccccccc---------------------hhhhhccccCcEEEccCCcccc
Confidence 444443 333333333444444444444443322210 1224455566666666666654
Q ss_pred CCC--ccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCccc
Q 001226 520 SLP--ATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYEL 597 (1119)
Q Consensus 520 ~~p--~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 597 (1119)
..+ ..+..+++|++|++++|+++ .+|..+..+++|++|+|++|+++ .+|..+. ++|++|+|++|++++.+
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~---- 447 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS---- 447 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----
T ss_pred cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----
Confidence 322 34566666666666666666 46666677777777777777776 4454443 57888888888887532
Q ss_pred ccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCcc
Q 001226 598 GKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIP 666 (1119)
Q Consensus 598 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 666 (1119)
..+++|++|||++|+|+ .+|. ...+++|++|+|++|++++.+|..|..+++|+.|++++|++.+..|
T Consensus 448 ~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 46788888888888887 5665 4677888888888888888888888888888888888888887766
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.4e-49 Score=480.87 Aligned_cols=471 Identities=20% Similarity=0.198 Sum_probs=301.0
Q ss_pred CCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEE
Q 001226 239 RNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIA 318 (1119)
Q Consensus 239 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 318 (1119)
++|++|++++|+++ .+.+..|.++++|++|+|++|++++..|++|.++++|++|+|++|++++.++..|+.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 56777777777776 34455677777777777777777777777777777777777777777777777777777777777
Q ss_pred cccccccc-ccCcccCCCCCCCeEEccCCc-ccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccc
Q 001226 319 LSRNNLVG-QIPRSVGNLSSLNSLLLFNNR-LQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRI 396 (1119)
Q Consensus 319 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l 396 (1119)
|++|.+++ ..|..++++++|++|++++|. ++...+..+.++++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 77777775 245667777777777777777 3333335677777777777777777777777777777777777777777
Q ss_pred cCCCCccccccCcceEEEeecccccccC--C-ccccCCCCcCEEEccCccCcccchhhhh---ccCCccceeccccceee
Q 001226 397 EGAIPHQIGRMSKLVELALYNNRLTGRI--P-PDITRLRNLQFLSLAHNHLTGEVALELG---KHFPYLSRLDLTGNSFY 470 (1119)
Q Consensus 397 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~~l~~L~~L~L~~N~l~ 470 (1119)
.......+..+++|++|++++|++++.. | .....+++|+.|++++|.+++..+..+. ..++.|+.+++++|.+.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 6433333355777777777777777532 1 1234566777777777777665544432 34556677777777665
Q ss_pred CccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccC-----CCccccCCCCcceeeccCcccCCCC
Q 001226 471 GPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGS-----LPATLERNPGVSFLDVRGNLLQGSI 545 (1119)
Q Consensus 471 ~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~l~~N~l~~~~ 545 (1119)
+...-.. .....+..+.+|+.|++.++.+... ++..+...++|+.|++++|++. .+
T Consensus 265 ~~~~~~~------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~i 325 (549)
T 2z81_A 265 GLGDFNP------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV 325 (549)
T ss_dssp CCSCCCC------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CC
T ss_pred ccccccc------------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cC
Confidence 4311000 0011223344455555555443321 1111223345566666666654 34
Q ss_pred Cccc-cccccceEEeccCCcccCCCC---CccCCcccccEEEcccCcccCcCC--cccccCCCCcEEeccCccccccCCh
Q 001226 546 PPVF-GFWSNLTMLDFSENRLSGSIP---SELGNLENLQILRLSANKLDGRIP--YELGKCTKMIKLDLSDNYLAGSIPS 619 (1119)
Q Consensus 546 p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~ 619 (1119)
|..+ ..+++|++|+|++|++++.+| ..++.+++|++|+|++|++++..+ ..+..+++|++|||++|+++ .+|.
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 404 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh
Confidence 4433 345666666666666665442 235556666666666666653221 33556666666666666665 4565
Q ss_pred hhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccc
Q 001226 620 EVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDK 699 (1119)
Q Consensus 620 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~ 699 (1119)
.+..+++|++|+|++|+++ .+|..+. ++|+.|+|++|++++.+ . .++.+ +.|++++|+|+ .+|. .+.+++
T Consensus 405 ~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~-~---~l~~L-~~L~Ls~N~l~-~ip~-~~~l~~ 474 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS-L---FLPRL-QELYISRNKLK-TLPD-ASLFPV 474 (549)
T ss_dssp CCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC-C---CCTTC-CEEECCSSCCS-SCCC-GGGCTT
T ss_pred hhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc-c---cCChh-cEEECCCCccC-cCCC-cccCcc
Confidence 6666666666666666665 2333332 45666666666666532 2 22222 34777777777 6776 467889
Q ss_pred cceeeccCceecccCCccccccccceEEecccccccccCCC
Q 001226 700 LQILDLSSNSFSGEIPTEVNNMVSLYFVNISFNHFSGKLPA 740 (1119)
Q Consensus 700 L~~L~Ls~N~l~g~ip~~~~~~~~l~~l~ls~N~~~g~~p~ 740 (1119)
|+.|||++|+|++.+|..+..+++|+.+++++|+++|..|.
T Consensus 475 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 99999999999988888899999999999999999998884
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-50 Score=498.74 Aligned_cols=450 Identities=19% Similarity=0.278 Sum_probs=249.1
Q ss_pred CccEEEcCCCccCCCcchhhcCCCCCceeeecccccc------c------cCcccccCCCCCcEEEccccccccccCccc
Q 001226 265 QLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLN------G------TISGQISHCNQLQVIALSRNNLVGQIPRSV 332 (1119)
Q Consensus 265 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~------~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 332 (1119)
+++.|+|++|+++|.+|.+++++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+.+|..+
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGS
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhH
Confidence 4566666666666666666666666666666666541 1 111111 23344 5555555555555444
Q ss_pred CCC-CCCCeEEccCCcccCCCCCCCCCCCCCcEEEcc--cCcCcccCchhhhcccccceeeccCccccCC----------
Q 001226 333 GNL-SSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQ--HNFIGGTIPPEICNLAKLEVLYLFNNRIEGA---------- 399 (1119)
Q Consensus 333 ~~l-~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~--~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~---------- 399 (1119)
..+ ..+..+++....+.. .....++.+.+. +|++++ +|..++++++|++|+|++|++++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 231 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred HHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccc
Confidence 321 112222222111110 011112222222 344444 455555555555555555555543
Q ss_pred -------CCcccc--ccCcceEEEeecccccccCCccccCCCCcCEEEccCcc-Ccc-cchhhhhc-----cCCccceec
Q 001226 400 -------IPHQIG--RMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNH-LTG-EVALELGK-----HFPYLSRLD 463 (1119)
Q Consensus 400 -------~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~-----~l~~L~~L~ 463 (1119)
+|..++ ++++|++|++++|++.+.+|..+.++++|++|++++|+ ++| .+|..+.. .+++|++|+
T Consensus 232 ~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred cchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 455555 55555555555555555555555555555555555555 554 44444432 125555555
Q ss_pred cccceeeCccCC--ccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCC-cceeeccCcc
Q 001226 464 LTGNSFYGPIPA--NICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPG-VSFLDVRGNL 540 (1119)
Q Consensus 464 L~~N~l~~~~p~--~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~l~~N~ 540 (1119)
+++|+++ .+|. .+..+++|+.|++++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |+.|++++|+
T Consensus 312 L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 312 IGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred CCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence 5555555 4555 55555555555555555555555 5555555555555555555 45555555555 5555555555
Q ss_pred cCCCCCccccccc--cceEEeccCCcccCCCCCccC-------CcccccEEEcccCcccCcCCcc-cccCCCCcEEeccC
Q 001226 541 LQGSIPPVFGFWS--NLTMLDFSENRLSGSIPSELG-------NLENLQILRLSANKLDGRIPYE-LGKCTKMIKLDLSD 610 (1119)
Q Consensus 541 l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~ 610 (1119)
++ .+|..++.++ +|++|+|++|++++.+|..|. .+++|+.|+|++|++. .+|.. +..+++|++|+|++
T Consensus 389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCS
T ss_pred Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCC
Confidence 55 4555544433 555555555555555555555 4555555555555555 33332 33355555555555
Q ss_pred ccccccCChhhhhc--------ccCCeeEccCccCccCCCcccc--ccccccEeecCCcccCCCccccchhhccccceee
Q 001226 611 NYLAGSIPSEVISL--------EKMQSLSLQENNLSGAIPDAFS--SVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILN 680 (1119)
Q Consensus 611 N~l~~~~p~~~~~l--------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ 680 (1119)
|+++ .+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..++.++.+. .|+
T Consensus 467 N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~-~L~ 542 (636)
T 4eco_A 467 NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK-GFG 542 (636)
T ss_dssp SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC-EEE
T ss_pred CCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC-EEE
Confidence 5555 344332221 15555555555555 4555554 55555555555555554 555555554442 355
Q ss_pred e------ccccccCCcccccccccccceeeccCceecccCCccccccccceEEecccccccc
Q 001226 681 V------SNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVNNMVSLYFVNISFNHFSG 736 (1119)
Q Consensus 681 l------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~l~~l~ls~N~~~g 736 (1119)
+ ++|++.+.+|..++++++|+.|||++|+| +.||..+. ++|+.||+++|++..
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 5 67899999999999999999999999999 69999876 799999999998764
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-47 Score=474.89 Aligned_cols=553 Identities=20% Similarity=0.128 Sum_probs=374.8
Q ss_pred CCCCCCCCCCCCCCceeeeeeeecCCCceEEEecCCCcccccCccchhhhccCCcccEEEcCCCcccCCCCcccccCCCc
Q 001226 43 SHLPWNQSVSTSAPCKWSGVSCYNNSSSLKALNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTGSIPKQLGNCGQL 122 (1119)
Q Consensus 43 ~~~~w~~~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L 122 (1119)
.+.+|+.+ -|..|....|.... +..++++.+++.+++.. -+++++|||++|.|++..+..|.++++|
T Consensus 12 ~~~~~~~~----~p~~~~~c~~~~~~---~~~~c~~~~l~~vP~~l------p~~~~~LdLs~N~i~~l~~~~f~~l~~L 78 (635)
T 4g8a_A 12 KLAAANSS----IPESWEPCVEVVPN---ITYQCMELNFYKIPDNL------PFSTKNLDLSFNPLRHLGSYSFFSFPEL 78 (635)
T ss_dssp -----------------CCSEEEETT---TEEECTTSCCSSCCSSS------CTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhcccCC----CCCCCCCccccCCC---CEEECCCCCcCccCCCC------CcCCCEEEeeCCCCCCCCHHHHhCCCCC
Confidence 45566643 24556554554321 23577888888776532 1489999999999997777889999999
Q ss_pred cEEEcccccccccCCccccccCccCEEEccCccccCCCCcccccccccceeeecccccccccCccCCCcccccEEEeccc
Q 001226 123 KTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESIGFHNNFLNGELPNDICSLPKLKSLYLNTN 202 (1119)
Q Consensus 123 ~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 202 (1119)
++|+|++|+|++..|.+|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|+++++|++|++++|
T Consensus 79 ~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 79 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC
Confidence 99999999999877888999999999999999999777778999999999999999999888888999999999999999
Q ss_pred cccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCCccChhhhhcCCCc----cEEEcCCCccCC
Q 001226 203 NLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGGAISPWIFKGLLQL----EVLYLDDNNLEG 278 (1119)
Q Consensus 203 ~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L----~~L~L~~n~l~~ 278 (1119)
++++. .+|..++++++|++|++++|++++ +.+..|..+.++ ..++++.|.++.
T Consensus 159 ~l~~~----------------------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 159 LIQSF----------------------KLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp CCCCC----------------------CCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred ccccC----------------------CCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhcccCcccc
Confidence 88743 345677788888888888888864 445555554443 367788888875
Q ss_pred CcchhhcCCCCCceeeecccccc-ccCcccccCCCCCcEEEccccccc------cccCcccCCCCCCCeEEccCCccc--
Q 001226 279 QIPETLWGLENLQKLVLSANKLN-GTISGQISHCNQLQVIALSRNNLV------GQIPRSVGNLSSLNSLLLFNNRLQ-- 349 (1119)
Q Consensus 279 ~~p~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~L~~N~l~-- 349 (1119)
..+..+. ...++.+++++|... ...+..+..+..++...+..+... ......+..+..+....+..+...
T Consensus 216 i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~ 294 (635)
T 4g8a_A 216 IQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 294 (635)
T ss_dssp ECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC
T ss_pred cCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Confidence 5444443 345677777777554 233455666777776666443322 122223333344444443333221
Q ss_pred -CCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeecccccccCCccc
Q 001226 350 -GTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDI 428 (1119)
Q Consensus 350 -~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 428 (1119)
...+..+..+.+++.+++.+|.+... ..+.....|+.|++.+|.+....+. .+..|+.+++..|.+.. +...
T Consensus 295 ~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~--~~~~ 367 (635)
T 4g8a_A 295 LDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN--AFSE 367 (635)
T ss_dssp EEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC--BCCC
T ss_pred ccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC--Cccc
Confidence 11222334444555555555544322 1233344455555555554433221 23344444455444432 1122
Q ss_pred cCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCcccccccccc
Q 001226 429 TRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLR 508 (1119)
Q Consensus 429 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 508 (1119)
..+++|+.|++++|.+.. .+..+..+....+|+.|+++.|.+. ..+..+..+++|+
T Consensus 368 ~~l~~L~~L~ls~n~l~~-----------------------~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~ 423 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSF-----------------------KGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLE 423 (635)
T ss_dssp CBCTTCCEEECCSSCCBE-----------------------EEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCC
T ss_pred ccccccccchhhcccccc-----------------------ccccccchhhhhhhhhhhccccccc-ccccccccccccc
Confidence 334444444444444431 1223344445566777777777665 3445567778888
Q ss_pred EEEeccCccccCCC-ccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCccc-CCCCCccCCcccccEEEccc
Q 001226 509 RVILSNNLLQGSLP-ATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLS-GSIPSELGNLENLQILRLSA 586 (1119)
Q Consensus 509 ~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~ 586 (1119)
.+++++|......+ ..+..+++++.++++.|++.+..|..+..+++|++|+|++|++. +.+|..|..+++|++|+|++
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC
Confidence 88888777665443 46777888888888888888888888888888999999988754 45788888999999999999
Q ss_pred CcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCcccccc-ccccEeecCCcccCC
Q 001226 587 NKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSV-QSLFELQLGSNIFDG 663 (1119)
Q Consensus 587 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~ 663 (1119)
|++++..|..|.++++|++|+|++|+|++..|..+..+++|++|+|++|+|++..|+.|..+ ++|+.|+|++|+|..
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99988888889999999999999999988888888889999999999999999889999888 689999999998874
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.2e-49 Score=475.66 Aligned_cols=454 Identities=20% Similarity=0.209 Sum_probs=302.6
Q ss_pred EEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCCc
Q 001226 268 VLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNR 347 (1119)
Q Consensus 268 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 347 (1119)
+|++++|+++ .+|..+. ++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|+++++|++|+|++|+
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 3445555554 2333333 455555555555554444455555555555555555554445555555555555555555
Q ss_pred ccCCCCCCCCCCCCCcEEEcccCcCcc-cCchhhhcccccceeeccCccccCCCCccccccCcc--eEEEeecccc--cc
Q 001226 348 LQGTLPPELGNCGSLVDLRLQHNFIGG-TIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKL--VELALYNNRL--TG 422 (1119)
Q Consensus 348 l~~~~~~~l~~l~~L~~L~L~~N~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~l--~~ 422 (1119)
++ .+|.. .+++|++|++++|++++ .+|..|+++++|++|++++|++++ ..+..+++| ++|++++|.+ .+
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 55 23333 45555555555555554 244555555555555555555543 234444444 5555555555 44
Q ss_pred cCCccccCCC-CcCEEEccCccCcccchhhhhccCCccceeccccce-------eeCccCCccccccccceeeccCcccc
Q 001226 423 RIPPDITRLR-NLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNS-------FYGPIPANICVGTNLFVLVLGNNRFN 494 (1119)
Q Consensus 423 ~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-------l~~~~p~~~~~~~~L~~L~L~~N~l~ 494 (1119)
..|..+..+. +...+++++|++.+.++...+..++.|+.|++++|. +.+.+| .+..+++|+.|++++|.++
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 5555554444 233445555555555555555555666666666655 554444 5556666666666666665
Q ss_pred CCCCcccc---ccccccEEEeccCccccCCCccc-----cCCCCcceeeccCcccCCCCC-cccccc---ccceEEeccC
Q 001226 495 GSFPIEIG---KCSSLRRVILSNNLLQGSLPATL-----ERNPGVSFLDVRGNLLQGSIP-PVFGFW---SNLTMLDFSE 562 (1119)
Q Consensus 495 ~~~p~~~~---~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~l~~N~l~~~~p-~~~~~l---~~L~~L~Ls~ 562 (1119)
+..+..+. .+++|++|++++|+++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 43222211 13577888888888877777777 7788888888888887 455 444444 5688888888
Q ss_pred CcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccc--cCChhhhhcccCCeeEccCccCccC
Q 001226 563 NRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAG--SIPSEVISLEKMQSLSLQENNLSGA 640 (1119)
Q Consensus 563 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~ 640 (1119)
|.+.+.. .+..+++|++|++++|++++.+|..++.+++|++|+|++|++++ .+|..+..+++|++|+|++|++++.
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 8886322 12678889999999999988888888889999999999999886 5667788889999999999999885
Q ss_pred CCc-cccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecccCCcc-c
Q 001226 641 IPD-AFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTE-V 718 (1119)
Q Consensus 641 ~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-~ 718 (1119)
+|. .|..+++|++|++++|.+++.+|..+. .-++.|++++|+++ .+|..+..+++|++|+|++|+|+ .+|+. +
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 464 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIF 464 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC---TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTT
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc---ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHh
Confidence 665 488889999999999999888887664 23456999999999 88998889999999999999999 67776 8
Q ss_pred cccccceEEecccccccccCCC
Q 001226 719 NNMVSLYFVNISFNHFSGKLPA 740 (1119)
Q Consensus 719 ~~~~~l~~l~ls~N~~~g~~p~ 740 (1119)
..+++|+.+++++|++++..|.
T Consensus 465 ~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTCTTCCEEECCSSCBCCCHHH
T ss_pred ccCCcccEEECcCCCCcccCCc
Confidence 8999999999999999997763
No 20
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.3e-48 Score=437.81 Aligned_cols=259 Identities=27% Similarity=0.422 Sum_probs=203.2
Q ss_pred HhhCCceeeecCCccEEEEEeCC-----CceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNN-----SRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~-----~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
+++..++||+|+||+||+|+++. +++.||||+++.. .++|.+|++++++++|||||+++|+|.+++..|+|
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV 121 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMV 121 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 34566889999999999998653 5789999999643 34588999999999999999999999999999999
Q ss_pred EeccCCCCHHHhhccCCC------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceE
Q 001226 906 TEYMPGGTLFNVLHQNEP------------RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPK 973 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vk 973 (1119)
||||++|+|.++++.... ...++|.++..++.||++||+|||+. +||||||||+|||+++++.+|
T Consensus 122 ~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~K 198 (329)
T 4aoj_A 122 FEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVK 198 (329)
T ss_dssp EECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEE
T ss_pred EEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCcEE
Confidence 999999999999986532 23589999999999999999999999 999999999999999999999
Q ss_pred EEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhh
Q 001226 974 IGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWK 1052 (1119)
Q Consensus 974 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 1052 (1119)
|+|||+|+...............||+.|||||++.+..|+.++|||||||++|||+| |+.||..... .+.....
T Consensus 199 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~--~~~~~~i--- 273 (329)
T 4aoj_A 199 IGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN--TEAIDCI--- 273 (329)
T ss_dssp ECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH--HHHHHHH---
T ss_pred EcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH--HHHHHHH---
Confidence 999999987755444444456789999999999999999999999999999999998 8999975321 1111100
Q ss_pred hcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1053 LQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
... .+.. .+...+.++.+++.+||+.||++||||+||+++|+++.+...
T Consensus 274 -~~g--------~~~~----~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp 322 (329)
T 4aoj_A 274 -TQG--------RELE----RPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP 322 (329)
T ss_dssp -HHT--------CCCC----CCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC
T ss_pred -HcC--------CCCC----CcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCCc
Confidence 000 0010 111234578899999999999999999999999999877643
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-47 Score=464.85 Aligned_cols=439 Identities=20% Similarity=0.191 Sum_probs=263.4
Q ss_pred CCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEE
Q 001226 239 RNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIA 318 (1119)
Q Consensus 239 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 318 (1119)
++|++|++++|+++ .+.+..|.++++|++|+|++|++++..|++|.++++|++|+|++|+++.+++. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEe
Confidence 66777777777775 34456677777777777777777766677777777777777777777744333 667777777
Q ss_pred cccccccc-ccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCC--cEEEcccCcC--cccCchhhhccc-ccceeecc
Q 001226 319 LSRNNLVG-QIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSL--VDLRLQHNFI--GGTIPPEICNLA-KLEVLYLF 392 (1119)
Q Consensus 319 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~L~~N~i--~~~~~~~l~~l~-~L~~L~L~ 392 (1119)
|++|.+++ .+|..|+++++|++|++++|++++ ..+..+++| ++|++++|.+ .+..|..+..+. +...++++
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 77777765 356677777777777777777664 245555666 7777777776 556666665554 33345666
Q ss_pred CccccCCCC-ccccccCcceEEEeeccc-------ccccCCccccCCCCcCEEEccCccCcccchhhhhc--cCCcccee
Q 001226 393 NNRIEGAIP-HQIGRMSKLVELALYNNR-------LTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGK--HFPYLSRL 462 (1119)
Q Consensus 393 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~l~~L~~L 462 (1119)
+|.+.+.++ ..+..+++|+.|++++|. +.+.+| .+..+++|+.|++++|.+++..+..+.. ..+.|++|
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 666654433 345566677777777665 554444 5666666777777666666433332221 12456666
Q ss_pred ccccceeeCccCCcc-----ccccccceeeccCccccCCCC-ccccccccccEEEeccCccccCCCccccCCCCcceeec
Q 001226 463 DLTGNSFYGPIPANI-----CVGTNLFVLVLGNNRFNGSFP-IEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDV 536 (1119)
Q Consensus 463 ~L~~N~l~~~~p~~~-----~~~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 536 (1119)
++++|.++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ ....+|+.|++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~---------------------~~~~~L~~L~l 309 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI---------------------FSNMNIKNFTV 309 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH---------------------HHTCCCSEEEE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc---------------------cccCceeEEEc
Confidence 666666665555555 4455555555555554 233 233322 00033444444
Q ss_pred cCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccC--cCCcccccCCCCcEEeccCcccc
Q 001226 537 RGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDG--RIPYELGKCTKMIKLDLSDNYLA 614 (1119)
Q Consensus 537 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~ 614 (1119)
++|.+.... .+..+++|++|+|++|++++.+|..++++++|++|+|++|++.+ .+|..+..+++|++|||++|+++
T Consensus 310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 444443211 11344555556666665555555555555666666666666554 33445555666666666666665
Q ss_pred ccCChh-hhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccc
Q 001226 615 GSIPSE-VISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPEC 693 (1119)
Q Consensus 615 ~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~ 693 (1119)
+.+|.. +..+++|++|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..++.++.+. .|++++|+|+ .+|..
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~-~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ-ELNVASNQLK-SVPDG 462 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC-EEECCSSCCC-CCCTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC-EEECCCCcCC-ccCHH
Confidence 534432 45555666666666666555555543 45666666666665 5565555555543 4777777777 45654
Q ss_pred -cccccccceeeccCceecccCC
Q 001226 694 -LGNLDKLQILDLSSNSFSGEIP 715 (1119)
Q Consensus 694 -~~~l~~L~~L~Ls~N~l~g~ip 715 (1119)
+..+++|+.|+|++|++++..|
T Consensus 463 ~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhccCCcccEEECcCCCCcccCC
Confidence 8889999999999999998655
No 22
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=4.8e-49 Score=435.11 Aligned_cols=259 Identities=27% Similarity=0.440 Sum_probs=210.4
Q ss_pred HhhCCceeeecCCccEEEEEeC-----CCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSN-----NSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~-----~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
+++..+.||+|+||+||+|++. .++..||||+++.. ..+|.+|++++++++|||||+++|+|.+++..|+|
T Consensus 14 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV 93 (299)
T 4asz_A 14 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMV 93 (299)
T ss_dssp GEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence 4567789999999999999875 35788999999643 34588999999999999999999999999999999
Q ss_pred EeccCCCCHHHhhccCC----------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEE
Q 001226 906 TEYMPGGTLFNVLHQNE----------PRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIG 975 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~ 975 (1119)
||||++|+|.++++..+ ....++|.++..++.||++|++|||++ +||||||||+|||+++++.+||+
T Consensus 94 ~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki~ 170 (299)
T 4asz_A 94 FEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIG 170 (299)
T ss_dssp EECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEEC
T ss_pred EEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEEEC
Confidence 99999999999998643 234699999999999999999999999 99999999999999999999999
Q ss_pred eccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhc
Q 001226 976 DFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQ 1054 (1119)
Q Consensus 976 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~ 1054 (1119)
|||+|+...............||+.|||||++.+..|+.++|||||||++|||+| |+.||..... .++... . .
T Consensus 171 DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~--~~~~~~---i-~ 244 (299)
T 4asz_A 171 DFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN--NEVIEC---I-T 244 (299)
T ss_dssp CCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH--HHHHHH---H-H
T ss_pred CcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHH---H-H
Confidence 9999987655444444445679999999999999999999999999999999998 8999975321 111110 0 0
Q ss_pred ccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1055 ENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
.. .... .+...+.++.+++.+||+.||++|||++||++.|+++.+...
T Consensus 245 ~~--------~~~~----~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p 292 (299)
T 4asz_A 245 QG--------RVLQ----RPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP 292 (299)
T ss_dssp HT--------CCCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred cC--------CCCC----CCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCC
Confidence 00 0000 111234578899999999999999999999999998876543
No 23
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.2e-48 Score=433.94 Aligned_cols=253 Identities=23% Similarity=0.370 Sum_probs=207.6
Q ss_pred hCCceeeecCCccEEEEEeC-----CCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 837 TEGRIIGKGKHGTVYRTLSN-----NSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 837 ~~~~~lG~G~fg~Vy~~~~~-----~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
...++||+|+||+||+|.+. .+++.||||+++.. .++|.+|+.++++++|||||+++|+|.+++..++||
T Consensus 29 ~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~ 108 (308)
T 4gt4_A 29 RFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIF 108 (308)
T ss_dssp EEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred eEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEE
Confidence 44578999999999999864 35688999998542 246899999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceE
Q 001226 907 EYMPGGTLFNVLHQNEP-------------RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPK 973 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vk 973 (1119)
|||++|+|.++++...+ ...++|..+.+++.||++||+|||++ +||||||||+|||+++++.+|
T Consensus 109 Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~~K 185 (308)
T 4gt4_A 109 SYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNVK 185 (308)
T ss_dssp ECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEE
T ss_pred EcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCCCEE
Confidence 99999999999975432 23589999999999999999999999 999999999999999999999
Q ss_pred EEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhh
Q 001226 974 IGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWK 1052 (1119)
Q Consensus 974 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 1052 (1119)
|+|||+|+...............||++|||||++.++.|+.++|||||||++|||+| |+.||..... .++.....
T Consensus 186 i~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~--~~~~~~i~-- 261 (308)
T 4gt4_A 186 ISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN--QDVVEMIR-- 261 (308)
T ss_dssp ECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH--HHHHHHHH--
T ss_pred ECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH--HHHHHHHH--
Confidence 999999987765444444556789999999999999999999999999999999998 8999975321 11111100
Q ss_pred hcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccc
Q 001226 1053 LQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLN 1110 (1119)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~ 1110 (1119)
... ..+ .+...+..+.+++.+||+.||++||||+||+++|+++.
T Consensus 262 --~~~--------~~~----~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 262 --NRQ--------VLP----CPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp --TTC--------CCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred --cCC--------CCC----CcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence 000 000 11123456889999999999999999999999999763
No 24
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-48 Score=429.14 Aligned_cols=257 Identities=32% Similarity=0.463 Sum_probs=198.8
Q ss_pred hhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEecc
Q 001226 836 ATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 836 ~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
++.+++||+|+||+||+|+++. .||||+++.. ...|.+|+.++++++|||||++++++.+ +..|+|||||
T Consensus 38 l~l~~~iG~G~fG~Vy~~~~~~---~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~ 113 (307)
T 3omv_A 38 VMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWC 113 (307)
T ss_dssp CCEEEECCCCSSSEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECC
T ss_pred eEEeeEEeeCCCcEEEEEEECC---cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEcC
Confidence 4556889999999999998754 5899998532 2458899999999999999999998865 5689999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCC
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSS 989 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~ 989 (1119)
++|+|.++++.... .+++.++..++.||++||+|||++ +||||||||+|||+++++.+||+|||+|+........
T Consensus 114 ~gGsL~~~l~~~~~--~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 114 EGSSLYKHLHVQET--KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp SSCBHHHHHHTSCC--CCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred CCCCHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccCCcc
Confidence 99999999986543 499999999999999999999999 9999999999999999999999999999876544333
Q ss_pred CcccccccCCCcccccccCC---CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 990 STRSAIVGSLGYIAPENAYS---TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 990 ~~~~~~~gt~~y~aPE~~~~---~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
.......||+.|||||++.+ +.|+.++|||||||++|||+||+.||....... .. ....... ...+.
T Consensus 189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~--~~---~~~~~~~-----~~~p~ 258 (307)
T 3omv_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD--QI---IFMVGRG-----YASPD 258 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH--HH---HHHHHTT-----CCCCC
T ss_pred eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHH--HH---HHHHhcC-----CCCCC
Confidence 34455689999999998853 468999999999999999999999997432110 00 0000000 00111
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
.. ......+..+.+++.+||+.||++||||+||+++|+.++....
T Consensus 259 ~~---~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 259 LS---KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp ST---TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred cc---cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence 11 0111234578899999999999999999999999998876543
No 25
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=4.4e-48 Score=430.88 Aligned_cols=256 Identities=23% Similarity=0.228 Sum_probs=207.5
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCCCC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPGGT 913 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~gs 913 (1119)
..|+..++||+|+||+||+|+++.+|+.||||+++... ...+|+.+++.++|||||++++++.+++..|+|||||+||+
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~ 136 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGS 136 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCB
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHH-hHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCc
Confidence 34666788999999999999999999999999997543 33579999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC-ceEEEeccccccccCCCCC---
Q 001226 914 LFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL-EPKIGDFGMSKLISDSHSS--- 989 (1119)
Q Consensus 914 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~-~vkl~DfGla~~~~~~~~~--- 989 (1119)
|.++++..+ .+++..+..++.||+.||+|||++ +||||||||+|||++.+| ++||+|||+|+........
T Consensus 137 L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~ 210 (336)
T 4g3f_A 137 LGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSL 210 (336)
T ss_dssp HHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC---------
T ss_pred HHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccce
Confidence 999998765 499999999999999999999999 999999999999999998 6999999999877543221
Q ss_pred CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 990 STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 990 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||....... ... . ......... .+
T Consensus 211 ~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~--~~~--~-i~~~~~~~~-----~~-- 278 (336)
T 4g3f_A 211 LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP--LCL--K-IASEPPPIR-----EI-- 278 (336)
T ss_dssp ---CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC--CHH--H-HHHSCCGGG-----GS--
T ss_pred ecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH--HHH--H-HHcCCCCch-----hc--
Confidence 12334679999999999999999999999999999999999999997532211 110 0 000000000 01
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
+...+..+.+++.+||+.||++|||++|+++++.+..++
T Consensus 279 ----~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 279 ----PPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp ----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ----CccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence 112245678999999999999999999999999876543
No 26
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=7e-48 Score=430.40 Aligned_cols=246 Identities=23% Similarity=0.306 Sum_probs=205.5
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc----ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR----SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMP 910 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 910 (1119)
.|+..++||+|+||+||+|+++.+|+.||||+++. ..+.+.+|+.+++.++|||||++++++.+++..|+|||||+
T Consensus 75 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~ 154 (346)
T 4fih_A 75 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 154 (346)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred hcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCC
Confidence 36667899999999999999999999999999843 33568899999999999999999999999999999999999
Q ss_pred CCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCC
Q 001226 911 GGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSS 990 (1119)
Q Consensus 911 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~ 990 (1119)
||+|.+++... .+++..++.++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+...... .
T Consensus 155 gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~ 225 (346)
T 4fih_A 155 GGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--P 225 (346)
T ss_dssp TEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS--C
T ss_pred CCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCC--C
Confidence 99999999764 389999999999999999999999 99999999999999999999999999998775432 2
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFW 1070 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1119)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.... ....+.... ....+.+.
T Consensus 226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~----~~~~~~~i~--------~~~~~~~~-- 291 (346)
T 4fih_A 226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP----PLKAMKMIR--------DNLPPRLK-- 291 (346)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHHH--------HSSCCCCS--
T ss_pred cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC----HHHHHHHHH--------cCCCCCCC--
Confidence 3345789999999999999999999999999999999999999996421 111111100 00011111
Q ss_pred CchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1071 DSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1071 ~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.....+.++.+++.+||+.||++|||++|+++|
T Consensus 292 --~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 292 --NLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp --CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred --ccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 112234577899999999999999999999986
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.4e-47 Score=475.62 Aligned_cols=438 Identities=19% Similarity=0.238 Sum_probs=239.7
Q ss_pred CCccEEEcCCCccCCCcchhhcCCCCCceeee-ccccccccCcccc----------------------------------
Q 001226 264 LQLEVLYLDDNNLEGQIPETLWGLENLQKLVL-SANKLNGTISGQI---------------------------------- 308 (1119)
Q Consensus 264 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-s~N~l~~~~~~~~---------------------------------- 308 (1119)
.+++.|+|++|++.|.+|.+|+++++|++|+| ++|.+++..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46888899999888888888888999999999 8887765522110
Q ss_pred -----------------cCCCCCcEEEccc--cccccccCcccCCCCCCCeEEccCCcccC-----------------CC
Q 001226 309 -----------------SHCNQLQVIALSR--NNLVGQIPRSVGNLSSLNSLLLFNNRLQG-----------------TL 352 (1119)
Q Consensus 309 -----------------~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------~~ 352 (1119)
.....++.+.++. |++++ +|..++++++|++|+|++|++++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0111222233322 55665 56666666666666666666665 25
Q ss_pred CCCCC--CCCCCcEEEcccCcCcccCchhhhcccccceeeccCcc-ccC-CCCccccccC-------cceEEEeeccccc
Q 001226 353 PPELG--NCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNR-IEG-AIPHQIGRMS-------KLVELALYNNRLT 421 (1119)
Q Consensus 353 ~~~l~--~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~-------~L~~L~L~~N~l~ 421 (1119)
|..++ ++++|++|+|++|.+.+.+|..|.++++|+.|+|++|+ +++ .+|..++.++ +|+.|+|++|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 55555 66666666666666666666666666666666666665 555 4555444443 6666666666665
Q ss_pred ccCCc--cccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccc-cceeeccCccccCCCC
Q 001226 422 GRIPP--DITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTN-LFVLVLGNNRFNGSFP 498 (1119)
Q Consensus 422 ~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-L~~L~L~~N~l~~~~p 498 (1119)
.+|. .+.++++|+.|+|++|+++ .+| .+..+++|+.|+|++|.++ .+|..+..+++ |+.|+|++|+++ .+|
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 5555 5666666666666666655 444 3344555555555555555 45555555555 555555555555 455
Q ss_pred cccccccc--ccEEEeccCccccCCCccc---c--CCCCcceeeccCcccCCCCCcc-ccccccceEEeccCCcccCCCC
Q 001226 499 IEIGKCSS--LRRVILSNNLLQGSLPATL---E--RNPGVSFLDVRGNLLQGSIPPV-FGFWSNLTMLDFSENRLSGSIP 570 (1119)
Q Consensus 499 ~~~~~l~~--L~~L~Ls~N~l~~~~p~~~---~--~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p 570 (1119)
..+..++. |+.|+|++|++.+.+|... . .+++|+.|++++|+++ .+|.. +..+++|+.|+|++|+|+ .+|
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 54444433 5555555555555443222 1 2224555555555555 23332 224445555555555554 333
Q ss_pred CccCC--------cccccEEEcccCcccCcCCcccc--cCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccC
Q 001226 571 SELGN--------LENLQILRLSANKLDGRIPYELG--KCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGA 640 (1119)
Q Consensus 571 ~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 640 (1119)
..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~---- 787 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR---- 787 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----
Confidence 33221 114555555555554 4444444 45555555555555543 44444555555555554311
Q ss_pred CCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecccCCccccc
Q 001226 641 IPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVNN 720 (1119)
Q Consensus 641 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 720 (1119)
++++|++.+.+|..+..++.+. .|+|++|+| +.+|..+. ++|+.|||++|++...-+..+..
T Consensus 788 --------------~ls~N~l~~~ip~~l~~L~~L~-~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 788 --------------DAEGNRILRQWPTGITTCPSLI-QLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp --------------CTTCCBCCCCCCTTGGGCSSCC-EEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred --------------CcccccccccChHHHhcCCCCC-EEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 0122555555555555555443 366666666 45666554 46667777777666444444444
Q ss_pred cccceEEecccccc
Q 001226 721 MVSLYFVNISFNHF 734 (1119)
Q Consensus 721 ~~~l~~l~ls~N~~ 734 (1119)
...+..+.+++|.+
T Consensus 850 ~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 850 YIEAGMYVLLYDKT 863 (876)
T ss_dssp HHHTTCCEEECCTT
T ss_pred cccchheeecCCCc
Confidence 44555555666544
No 28
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=3.1e-48 Score=426.68 Aligned_cols=245 Identities=23% Similarity=0.320 Sum_probs=206.5
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..+.||+|+||+||+|+++.+++.||||++++. ...+.+|+++++.++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 3588889999999999999999999999999998532 245789999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||++||+|.+++.+.+ .+++..++.++.||+.|++|||++ +||||||||+|||++.++.+||+|||+|+.....
T Consensus 112 Ey~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence 9999999999998765 499999999999999999999999 9999999999999999999999999999987654
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
.........+||+.|||||++.+..|+.++||||+||++|||++|+.||.... ... ...... ...
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~--~~~---~~~~i~----------~~~ 250 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN--EGL---IFAKII----------KLE 250 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHH---HHHHHH----------HTC
T ss_pred CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHH---HHHHHH----------cCC
Confidence 44444556789999999999999999999999999999999999999996421 111 111111 111
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVV 1103 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell 1103 (1119)
.... ...+.++.+++.+||+.||++|||++|+.
T Consensus 251 ~~~p----~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 251 YDFP----EKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp CCCC----TTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CCCC----cccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 1111 11234678999999999999999999864
No 29
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.2e-47 Score=427.28 Aligned_cols=276 Identities=24% Similarity=0.308 Sum_probs=201.2
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-cc--HHHHHHHHhhcCCCCEEEEeeeeecCC----ceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-TN--FDVEIRTLSLVRHRNILRIVGSCTKDE----HGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~--~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~lV~e 907 (1119)
++..+++||+|+||+||+|+++ |+.||||+++... .. +++|+..+..++|||||++++++.+++ ..|+|||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~~--g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~E 81 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD 81 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEET--TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred EEEEEEEEeeCCCeEEEEEEEC--CEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEec
Confidence 4556789999999999999874 7899999996543 22 345666667889999999999998654 4699999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC-----CCCCeEecCCCCCCeEeCCCCceEEEecccccc
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYD-----CVPQIIHRDIKSDNILLDSELEPKIGDFGMSKL 982 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-----~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~ 982 (1119)
||++|+|.++++... ++|+.+.+++.|+++|++|||++ +.++||||||||+|||++.++.+||+|||+|+.
T Consensus 82 y~~~gsL~~~l~~~~----l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 82 YHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp CCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred CCCCCcHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcc
Confidence 999999999998653 89999999999999999999976 245899999999999999999999999999987
Q ss_pred ccCCCCC--CcccccccCCCcccccccCCC------CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhh-
Q 001226 983 ISDSHSS--STRSAIVGSLGYIAPENAYST------RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKL- 1053 (1119)
Q Consensus 983 ~~~~~~~--~~~~~~~gt~~y~aPE~~~~~------~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~- 1053 (1119)
....... ......+||+.|||||++.+. .++.++|||||||++|||+||+.||............+.....
T Consensus 158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~ 237 (303)
T 3hmm_A 158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS 237 (303)
T ss_dssp EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred ccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccch
Confidence 7543321 223346899999999988654 3677999999999999999998887543211111100000000
Q ss_pred ---cccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCCC
Q 001226 1054 ---QENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGGM 1117 (1119)
Q Consensus 1054 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~~ 1117 (1119)
.........+++.++.. .........+.+++.+||+.||++||||+||++.|+++.++.+.+|
T Consensus 238 ~~~~~~~~~~~~~rp~~p~~-~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~~ik~ 303 (303)
T 3hmm_A 238 VEEMRKVVCEQKLRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEGIKM 303 (303)
T ss_dssp HHHHHHHHTTSCCCCCCCGG-GGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhcccCCCCCCcc-ccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHHcCCCC
Confidence 00000001111222111 1123455678899999999999999999999999999998876654
No 30
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=2.6e-48 Score=434.56 Aligned_cols=250 Identities=22% Similarity=0.358 Sum_probs=201.3
Q ss_pred HHHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 832 DVIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 832 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+.+|+..+.||+|+||+||+|+++.+++.||||+++.. ...+.+|+++++.++|||||++++++.+++..|+|
T Consensus 22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiV 101 (350)
T 4b9d_A 22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIV 101 (350)
T ss_dssp CCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred cccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence 345788889999999999999999999999999998532 24578999999999999999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
||||+||+|.+++...+. ..+++..++.++.||+.||+|||++ +||||||||+|||++++|.+||+|||+|+....
T Consensus 102 mEy~~gg~L~~~i~~~~~-~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 177 (350)
T 4b9d_A 102 MDYCEGGDLFKRINAQKG-VLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS 177 (350)
T ss_dssp EECCTTCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred EeCCCCCcHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecC
Confidence 999999999999976542 3478999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
.. ......+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ........ ..
T Consensus 178 ~~--~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-----~~~~~~i~----------~~ 240 (350)
T 4b9d_A 178 TV--ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM-----KNLVLKII----------SG 240 (350)
T ss_dssp HH--HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHHHHHH----------HT
T ss_pred Cc--ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-----HHHHHHHH----------cC
Confidence 11 122346799999999999999999999999999999999999999964311 11000000 11
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.... .+...+.++.+++.+||+.||++|||++|+++|
T Consensus 241 ~~~~---~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 241 SFPP---VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp CCCC---CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CCCC---CCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 1100 011224567899999999999999999999875
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.1e-45 Score=455.06 Aligned_cols=443 Identities=23% Similarity=0.170 Sum_probs=248.7
Q ss_pred hhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeecccccccc-CcccccCCCCCcEEEccccccccccCcccCCCCCC
Q 001226 260 FKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGT-ISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSL 338 (1119)
Q Consensus 260 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 338 (1119)
|.++++|++|+|++|++++..+.+|+++++|++|+|++|+++.. .+..+..+++|++|+|++|++++..+..+..+.++
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 33344444444444444433334444444444444444444432 23344444444555555554444444444433322
Q ss_pred ----CeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcc-cCchhhhcccccceeeccCcc------ccCCCCcccccc
Q 001226 339 ----NSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGG-TIPPEICNLAKLEVLYLFNNR------IEGAIPHQIGRM 407 (1119)
Q Consensus 339 ----~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~-~~~~~l~~l~~L~~L~L~~N~------l~~~~~~~~~~l 407 (1119)
..++++.|.++...+..+ ....++.+++.+|.... ..+..+..+..++...+..+. +.......+..+
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 245566666653333333 23345566666665442 223345555655555543322 222333445555
Q ss_pred CcceEEEeecccccc---cCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccc
Q 001226 408 SKLVELALYNNRLTG---RIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLF 484 (1119)
Q Consensus 408 ~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~ 484 (1119)
..+....+..+.... ..+..+..+.+++.+++.+|.+....+ +.....++.|++++|.+.+..+. .+..|+
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~ 352 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTL---KLKSLK 352 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---GGSCCCCSEEEEESCEESSCCCC---BCTTCC
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---cccchhhhhhhcccccccCcCcc---cchhhh
Confidence 566666665544321 233445556677777777776653222 12345667777777766544332 334566
Q ss_pred eeeccCccccCCCCccccccccccEEEeccCcccc--CCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccC
Q 001226 485 VLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQG--SLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSE 562 (1119)
Q Consensus 485 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~ 562 (1119)
.+++..|.+... .....+++|+.|++++|.+.. ..+..+..+.+|++++++.|.... ++..+..+++|+.++++.
T Consensus 353 ~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 353 RLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp EEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred hcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhh
Confidence 666666665532 223456677777777776642 344455556666666666666553 344455566666666666
Q ss_pred CcccCCCC-CccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccc-cccCChhhhhcccCCeeEccCccCccC
Q 001226 563 NRLSGSIP-SELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYL-AGSIPSEVISLEKMQSLSLQENNLSGA 640 (1119)
Q Consensus 563 N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~ 640 (1119)
|+..+..+ ..|.++.+|+.+++++|++.+..|..+..+++|+.|+|++|++ .+.+|..+..+++|+.|+|++|+|++.
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 65554433 3455666666666666666666666666666666666666653 334555666666666666666666666
Q ss_pred CCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecccCCccccc
Q 001226 641 IPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVNN 720 (1119)
Q Consensus 641 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 720 (1119)
+|.+|.++++|++ |+|++|+|++..|..|+.+++|+.|||++|+|++.+|..+..
T Consensus 510 ~~~~f~~l~~L~~-------------------------L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 510 SPTAFNSLSSLQV-------------------------LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp CTTTTTTCTTCCE-------------------------EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred ChHHHcCCCCCCE-------------------------EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 6666666666665 455555555566677778888888888888888877877777
Q ss_pred c-ccceEEeccccccccc
Q 001226 721 M-VSLYFVNISFNHFSGK 737 (1119)
Q Consensus 721 ~-~~l~~l~ls~N~~~g~ 737 (1119)
+ ++|+.|++++|+|+..
T Consensus 565 l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 565 FPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCTTCCEEECTTCCBCCS
T ss_pred hhCcCCEEEeeCCCCccc
Confidence 6 5788888888888763
No 32
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=3.5e-47 Score=416.74 Aligned_cols=240 Identities=28% Similarity=0.424 Sum_probs=193.5
Q ss_pred CceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeec----CCceEEEEec
Q 001226 839 GRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTK----DEHGFIVTEY 908 (1119)
Q Consensus 839 ~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lV~e~ 908 (1119)
.++||+|+||+||+|.++.+++.||+|++... ...+.+|+++++.++|||||++++++.+ ++..|+||||
T Consensus 31 ~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy 110 (290)
T 3fpq_A 31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTEL 110 (290)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEEC
T ss_pred eeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeC
Confidence 46799999999999999999999999998532 2458899999999999999999999865 3457999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCCeEeCC-CCceEEEeccccccccC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQ--IIHRDIKSDNILLDS-ELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~Nill~~-~~~vkl~DfGla~~~~~ 985 (1119)
|+||+|.+++++.+ .+++..+..++.||+.||+|||++ + ||||||||+|||++. ++.+||+|||+|+....
T Consensus 111 ~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~ylH~~---~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~ 184 (290)
T 3fpq_A 111 MTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA 184 (290)
T ss_dssp CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence 99999999998765 489999999999999999999998 6 999999999999984 79999999999985432
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
......+||+.|||||++.+ .|+.++||||+||++|||+||+.||..... ........ ..... ..
T Consensus 185 ----~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~----~~~~~~~i-~~~~~-----~~ 249 (290)
T 3fpq_A 185 ----SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYRRV-TSGVK-----PA 249 (290)
T ss_dssp ----TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHHHH-TTTCC-----CG
T ss_pred ----CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc----HHHHHHHH-HcCCC-----CC
Confidence 22345689999999998764 699999999999999999999999964211 11110100 00000 00
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.. +...+.++.+++.+||+.||++|||++|+++|
T Consensus 250 ~~------~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~H 283 (290)
T 3fpq_A 250 SF------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp GG------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred CC------CccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 00 11122357899999999999999999999875
No 33
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=8.5e-47 Score=432.00 Aligned_cols=246 Identities=23% Similarity=0.304 Sum_probs=205.6
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc----ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR----SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMP 910 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 910 (1119)
.|+..++||+|+||+||+|+++.+|+.||||+++. ..+.+.+|+.+|+.++|||||+++++|.+++..|+|||||+
T Consensus 152 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~ 231 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 231 (423)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred hcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCC
Confidence 46677899999999999999999999999999843 33568899999999999999999999999999999999999
Q ss_pred CCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCC
Q 001226 911 GGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSS 990 (1119)
Q Consensus 911 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~ 990 (1119)
||+|.++++.. .+++..+..++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+...... .
T Consensus 232 gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~--~ 302 (423)
T 4fie_A 232 GGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--P 302 (423)
T ss_dssp TEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC--C
T ss_pred CCcHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCC--c
Confidence 99999999754 389999999999999999999999 99999999999999999999999999998775432 2
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFW 1070 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1119)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.... ....+.... ......+..+
T Consensus 303 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~----~~~~~~~i~--------~~~~~~~~~~ 370 (423)
T 4fie_A 303 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP----PLKAMKMIR--------DNLPPRLKNL 370 (423)
T ss_dssp CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHHH--------HSCCCCCSCT
T ss_pred cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC----HHHHHHHHH--------cCCCCCCccc
Confidence 3345789999999999999999999999999999999999999996421 111111000 0011111111
Q ss_pred CchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1071 DSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1071 ~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...+.++.+++.+||+.||++|||++|+++|
T Consensus 371 ----~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 371 ----HKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp ----TSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ----ccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1224567899999999999999999999986
No 34
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=6.1e-47 Score=410.99 Aligned_cols=244 Identities=26% Similarity=0.382 Sum_probs=190.6
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
+-+|+..+.||+|+||+||+|+++.+++.||||++++. ...+.+|+++++.++|||||++++++.+++..|+|
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv 91 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence 45788889999999999999999999999999998532 23578999999999999999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+ +|+|.+++...+ .+++..++.++.||+.|++|||++ +|+||||||+|||+++++.+||+|||+|+...+
T Consensus 92 mEy~-~g~L~~~l~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~ 164 (275)
T 3hyh_A 92 IEYA-GNELFDYIVQRD---KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164 (275)
T ss_dssp EECC-CEEHHHHHHHSC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC-----
T ss_pred EeCC-CCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCC
Confidence 9999 689999998765 499999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCCCcccccccCCCcccccccCCCCC-CCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRL-TEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
. ......+||+.|||||++.+..| +.++||||+||++|||++|+.||.... ..........
T Consensus 165 ~---~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~-----~~~~~~~i~~---------- 226 (275)
T 3hyh_A 165 G---NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES-----IPVLFKNISN---------- 226 (275)
T ss_dssp -------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHH----------
T ss_pred C---CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHc----------
Confidence 2 22345689999999999988776 579999999999999999999996421 1111111110
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...... ...+.++.+++.+||+.||++|||++|+++|
T Consensus 227 ~~~~~p----~~~s~~~~~li~~~L~~dP~~R~s~~eil~h 263 (275)
T 3hyh_A 227 GVYTLP----KFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp TCCCCC----TTSCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred CCCCCC----CCCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence 111110 1123467899999999999999999999985
No 35
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=4.7e-47 Score=428.48 Aligned_cols=260 Identities=25% Similarity=0.408 Sum_probs=210.3
Q ss_pred HhhCCceeeecCCccEEEEEeCCC-----ceEEEEEecccc-----cccHHHHHHHHhhcCC-CCEEEEeeeeecC-Cce
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNS-----RKHWAVKKLNRS-----ETNFDVEIRTLSLVRH-RNILRIVGSCTKD-EHG 902 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~-----~~~vavK~~~~~-----~~~~~~E~~~l~~l~h-~niv~l~~~~~~~-~~~ 902 (1119)
+|+.+++||+|+||+||+|.+... ++.||||+++.. ...+.+|+++++.++| ||||+++|+|.++ +..
T Consensus 65 ~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~ 144 (353)
T 4ase_A 65 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPL 144 (353)
T ss_dssp GEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCC
T ss_pred HeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEE
Confidence 567789999999999999987653 468999998643 2457889999999965 9999999998764 568
Q ss_pred EEEEeccCCCCHHHhhccCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC
Q 001226 903 FIVTEYMPGGTLFNVLHQNEP-------------RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE 969 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~ 969 (1119)
|+|||||++|+|.++++.... +..+++.++..++.||++||+|||++ +||||||||+|||++++
T Consensus 145 ~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~ 221 (353)
T 4ase_A 145 MVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEK 221 (353)
T ss_dssp EEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGG
T ss_pred EEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccCccceeeCCC
Confidence 999999999999999976432 23589999999999999999999999 99999999999999999
Q ss_pred CceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeeh
Q 001226 970 LEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTW 1048 (1119)
Q Consensus 970 ~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~ 1048 (1119)
+.+||+|||+|+...............||+.|||||++.+..|+.++|||||||++|||+| |+.||....... .+.
T Consensus 222 ~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~-~~~-- 298 (353)
T 4ase_A 222 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-EFC-- 298 (353)
T ss_dssp GCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-HHH--
T ss_pred CCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHH-HHH--
Confidence 9999999999997765444444556789999999999999999999999999999999998 999997532111 111
Q ss_pred hhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1049 TRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
. ...... .... +...+.++.+++.+||+.||++|||++||+++|+++.+...
T Consensus 299 -~-~i~~g~------~~~~------p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~~ 350 (353)
T 4ase_A 299 -R-RLKEGT------RMRA------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 350 (353)
T ss_dssp -H-HHHHTC------CCCC------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred -H-HHHcCC------CCCC------CccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHhh
Confidence 0 000000 0011 11124567899999999999999999999999999887654
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.1e-45 Score=449.48 Aligned_cols=453 Identities=19% Similarity=0.187 Sum_probs=267.9
Q ss_pred cEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCC
Q 001226 267 EVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNN 346 (1119)
Q Consensus 267 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 346 (1119)
+++++++|++++ +|..+. ++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 444444444442 333222 34444444444444444444444444444444444444444444444444444444444
Q ss_pred cccCCCCCCCCCCCCCcEEEcccCcCccc-CchhhhcccccceeeccCccccCCCCccccccCcc--eEEEeecccc--c
Q 001226 347 RLQGTLPPELGNCGSLVDLRLQHNFIGGT-IPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKL--VELALYNNRL--T 421 (1119)
Q Consensus 347 ~l~~~~~~~l~~l~~L~~L~L~~N~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~l--~ 421 (1119)
+++ .+|.. .+++|++|++++|++++. +|..|+++++|++|++++|++++. .+..+++| ++|++++|++ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 444 23322 444444444444444431 234444444444444444444432 12222222 4444444444 4
Q ss_pred ccCCccccCCC--CcCEEEccCccCcccchhhhhccCCccceeccccce-----eeCccCCccccccccceeeccCcccc
Q 001226 422 GRIPPDITRLR--NLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNS-----FYGPIPANICVGTNLFVLVLGNNRFN 494 (1119)
Q Consensus 422 ~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~p~~~~~~~~L~~L~L~~N~l~ 494 (1119)
+..|..+..+. .+ .+++++|.+.+.++...+..++.|+.|++++|. +.+. +..+..+++|+.|+++++.+.
T Consensus 185 ~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 185 GGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp SSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEEC
T ss_pred ccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCc
Confidence 44444444332 12 234444444444443333444444555554442 1111 112333444455555444443
Q ss_pred CC----CCccccccccccEEEeccCccccCCCccc-----cCCCCcceeeccCcccCCCCC-cccccc---ccceEEecc
Q 001226 495 GS----FPIEIGKCSSLRRVILSNNLLQGSLPATL-----ERNPGVSFLDVRGNLLQGSIP-PVFGFW---SNLTMLDFS 561 (1119)
Q Consensus 495 ~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~l~~N~l~~~~p-~~~~~l---~~L~~L~Ls 561 (1119)
+. ++..+ ..++|++|++++|.++|.+|..+ ..++.|+.++++.|.+ .+| ..+..+ .+|++|+++
T Consensus 263 ~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 263 WKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp HHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEE
T ss_pred HHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEcc
Confidence 21 11111 22367777777777776666665 5666666666666666 344 222222 468888888
Q ss_pred CCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcccccc--CChhhhhcccCCeeEccCccCcc
Q 001226 562 ENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGS--IPSEVISLEKMQSLSLQENNLSG 639 (1119)
Q Consensus 562 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~ 639 (1119)
+|.+.... ....+++|++|++++|++++.+|..+..+++|++|+|++|++++. +|..+..+++|++|+|++|++++
T Consensus 340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 88875321 126778888888888888877888888888888888888888752 34567888888888888888887
Q ss_pred CCCc-cccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecccCCcc-
Q 001226 640 AIPD-AFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTE- 717 (1119)
Q Consensus 640 ~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~- 717 (1119)
.+|. .|..+++|++|+|++|.+++.+|..+. .-++.|++++|+|+ .+|..+..+++|+.|||++|+|+ .+|+.
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 492 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTS
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhc---CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHH
Confidence 4554 588888888888888888887777664 22346899999998 78888889999999999999999 67777
Q ss_pred ccccccceEEecccccccccCCC
Q 001226 718 VNNMVSLYFVNISFNHFSGKLPA 740 (1119)
Q Consensus 718 ~~~~~~l~~l~ls~N~~~g~~p~ 740 (1119)
+..+++|+.+++++|+++|..|.
T Consensus 493 ~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTTCTTCCCEECCSCCBCCCHHH
T ss_pred HhcCCCCCEEEecCCCcCCCcch
Confidence 88999999999999999998874
No 37
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=1.5e-46 Score=413.65 Aligned_cols=245 Identities=24% Similarity=0.361 Sum_probs=195.3
Q ss_pred HHhhCCceeeecCCccEEEEEeC---CCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSN---NSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~---~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 904 (1119)
.+|+..+.||+|+||+||+|++. .+++.||||++++. ...+.+|+++++.++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 36788899999999999999874 46789999998532 2457889999999999999999999999999999
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
||||++||+|.+++.+.+ .+++.++..++.||+.||+|||++ +|+||||||+|||++++|.+||+|||+|+...
T Consensus 104 vmEy~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 177 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV---MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESI 177 (304)
T ss_dssp EECCCTTCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred EEEcCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceecc
Confidence 999999999999998765 489999999999999999999999 99999999999999999999999999998654
Q ss_pred CCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
+.. ......+||+.|||||++.+..|+.++||||+||++|||++|+.||..... .. ...... .
T Consensus 178 ~~~--~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~--~~---~~~~i~----------~ 240 (304)
T 3ubd_A 178 DHE--KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR--KE---TMTMIL----------K 240 (304)
T ss_dssp -----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HH---HHHHHH----------H
T ss_pred CCC--ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH--HH---HHHHHH----------c
Confidence 322 223456899999999999999999999999999999999999999964311 01 011111 1
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCC-----HHHHHHH
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPS-----MREVVGF 1105 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~ell~~ 1105 (1119)
..... +...+.++.+++.+||+.||++||| ++|+++|
T Consensus 241 ~~~~~----p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~H 282 (304)
T 3ubd_A 241 AKLGM----PQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRH 282 (304)
T ss_dssp CCCCC----CTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTS
T ss_pred CCCCC----CCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcC
Confidence 11111 1112456789999999999999998 4777764
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-44 Score=439.30 Aligned_cols=439 Identities=21% Similarity=0.201 Sum_probs=245.4
Q ss_pred CCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEE
Q 001226 239 RNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIA 318 (1119)
Q Consensus 239 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 318 (1119)
++|++|++++|+++ .+.+..|.++++|++|+|++|++++..|++|.++++|++|+|++|+++.+++. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEE
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEE
Confidence 56666777777665 34455666666677777777776666666666667777777777766644333 566666666
Q ss_pred ccccccccc-cCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCC--cEEEcccCcC--cccCchhhhccc--ccceeec
Q 001226 319 LSRNNLVGQ-IPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSL--VDLRLQHNFI--GGTIPPEICNLA--KLEVLYL 391 (1119)
Q Consensus 319 Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~L~~N~i--~~~~~~~l~~l~--~L~~L~L 391 (1119)
|++|++++. +|..|+++++|++|++++|++++ ..+..+++| ++|++++|.+ ++..|..+..+. .+ .+++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l 203 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVF 203 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEe
Confidence 666666642 34566666666666666666654 234444444 6666666666 555565555543 22 4456
Q ss_pred cCccccCCCCc-cccccCcceEEEeeccc-----ccccCCccccCCCCcCEEEccCccCcccchhhhhc--cCCccceec
Q 001226 392 FNNRIEGAIPH-QIGRMSKLVELALYNNR-----LTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGK--HFPYLSRLD 463 (1119)
Q Consensus 392 ~~N~l~~~~~~-~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~ 463 (1119)
++|.+.+.++. .+..+++|+.|++++|+ +.+ ....+..+++|+.|+++++.+++.....+.. ..++|++|+
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 66666554333 34456666666666664 221 1234555666666666666554322111110 123555555
Q ss_pred cccceeeCccCCcc-----ccccccceeeccCccccCCCC-ccccccccccEEEeccCccccCCCccccCCCCcceeecc
Q 001226 464 LTGNSFYGPIPANI-----CVGTNLFVLVLGNNRFNGSFP-IEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVR 537 (1119)
Q Consensus 464 L~~N~l~~~~p~~~-----~~~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 537 (1119)
+++|.++|.+|..+ ..++.|+.++++.|.+ .+| ..+..+ ....+|+.|+++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~---------------------~~~~~L~~L~l~ 339 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV---------------------FAEMNIKMLSIS 339 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH---------------------HHTCCCSEEEEE
T ss_pred EeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhh---------------------hccCcceEEEcc
Confidence 55555555555544 3334444444444443 222 111111 011344555555
Q ss_pred CcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccC--cCCcccccCCCCcEEeccCccccc
Q 001226 538 GNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDG--RIPYELGKCTKMIKLDLSDNYLAG 615 (1119)
Q Consensus 538 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~ 615 (1119)
+|.+.... ....+++|++|+|++|++++.+|..++++++|++|+|++|++++ .+|..+..+++|++|+|++|++++
T Consensus 340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 55443211 11344555555555555555555555555555555555555553 123445555556666666666555
Q ss_pred cCCh-hhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccc-
Q 001226 616 SIPS-EVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPEC- 693 (1119)
Q Consensus 616 ~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~- 693 (1119)
.+|. .+..+++|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..++.++.+ +.|++++|+|+ .+|..
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L-~~L~L~~N~l~-~l~~~~ 492 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL-QELNVASNQLK-SVPDGV 492 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC-SEEECCSSCCC-CCCTTS
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC-CEEECCCCCCC-CCCHHH
Confidence 3333 345555566666666666555554443 45566666666655 455555555444 34777777777 45655
Q ss_pred cccccccceeeccCceecccCCc
Q 001226 694 LGNLDKLQILDLSSNSFSGEIPT 716 (1119)
Q Consensus 694 ~~~l~~L~~L~Ls~N~l~g~ip~ 716 (1119)
++.+++|+.|+|++|++++..|.
T Consensus 493 ~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTTCTTCCCEECCSCCBCCCHHH
T ss_pred HhcCCCCCEEEecCCCcCCCcch
Confidence 88999999999999999987653
No 39
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=4e-45 Score=404.63 Aligned_cols=250 Identities=21% Similarity=0.334 Sum_probs=190.4
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCC-------
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDE------- 900 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------- 900 (1119)
+.+|+..+.||+|+||+||+|+++.+++.||||+++.. .+.+.+|+++++.++|||||++++++.+.+
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 83 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP 83 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence 34677889999999999999999999999999998532 235778999999999999999999986543
Q ss_pred -----ceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEE
Q 001226 901 -----HGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIG 975 (1119)
Q Consensus 901 -----~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~ 975 (1119)
..|+||||+++|+|.+++.........++..++.++.||++|++|||++ +||||||||+|||++.++.+||+
T Consensus 84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~ 160 (299)
T 4g31_A 84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVG 160 (299)
T ss_dssp ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEEC
T ss_pred cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEc
Confidence 3689999999999999998766544567778899999999999999999 99999999999999999999999
Q ss_pred eccccccccCCCCC----------CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCce
Q 001226 976 DFGMSKLISDSHSS----------STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDI 1045 (1119)
Q Consensus 976 DfGla~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 1045 (1119)
|||+|+........ ......+||+.|||||++.+..|+.++||||+||++|||++ ||... ....
T Consensus 161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~---~~~~ 234 (299)
T 4g31_A 161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQ---MERV 234 (299)
T ss_dssp CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSH---HHHH
T ss_pred cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCc---cHHH
Confidence 99999877543221 12234579999999999999999999999999999999996 76421 0000
Q ss_pred eehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1046 VTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.... ...... .............+++.+||+.||++|||++|++++
T Consensus 235 ~~~~-----------~~~~~~---~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 280 (299)
T 4g31_A 235 RTLT-----------DVRNLK---FPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIEN 280 (299)
T ss_dssp HHHH-----------HHHTTC---CCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHHH-----------HHhcCC---CCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 0000 000001 111222334456789999999999999999999985
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.4e-42 Score=408.01 Aligned_cols=199 Identities=22% Similarity=0.248 Sum_probs=85.5
Q ss_pred CCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCcccccccccceeeecccccccccCccCCCcccccEEE
Q 001226 119 CGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESIGFHNNFLNGELPNDICSLPKLKSLY 198 (1119)
Q Consensus 119 l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 198 (1119)
.++|++|++++|++ +.+|++++++++|++|++++|.++|.+|.+++++++|+.+++..|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 35566666666665 45666666666666666666666666666666666666555555432 3566677
Q ss_pred eccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCC
Q 001226 199 LNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEG 278 (1119)
Q Consensus 199 L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~ 278 (1119)
+++|++++.+ .. .++|++|++++|++++ ++. .+++|++|++++|++++
T Consensus 78 l~~~~l~~lp------------------------~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~ 125 (454)
T 1jl5_A 78 LNNLGLSSLP------------------------EL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA 125 (454)
T ss_dssp CTTSCCSCCC------------------------SC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC
T ss_pred ecCCccccCC------------------------CC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc
Confidence 7766665321 10 1344444444444443 211 12445555555555553
Q ss_pred CcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCC
Q 001226 279 QIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGN 358 (1119)
Q Consensus 279 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 358 (1119)
. |.. .++|++|++++|++++ +| .|..+++|++|++++|++++ +|..+ ++|++|++++|++++ +| .+++
T Consensus 126 l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~ 193 (454)
T 1jl5_A 126 L-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQN 193 (454)
T ss_dssp C-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTT
T ss_pred c-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccC
Confidence 1 111 1355555555555554 22 35555555555555555543 33222 244555555554443 22 3444
Q ss_pred CCCCcEEEcccCcCc
Q 001226 359 CGSLVDLRLQHNFIG 373 (1119)
Q Consensus 359 l~~L~~L~L~~N~i~ 373 (1119)
+++|++|++++|+++
T Consensus 194 l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 194 LPFLTAIYADNNSLK 208 (454)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred CCCCCEEECCCCcCC
Confidence 444444444444444
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.4e-42 Score=405.09 Aligned_cols=425 Identities=25% Similarity=0.317 Sum_probs=253.1
Q ss_pred CCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEE
Q 001226 239 RNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIA 318 (1119)
Q Consensus 239 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 318 (1119)
++|++|++++|++ +.+ |..+.++++|++|++++|++++.+|..++++++|+.+++++|.. .++++|+
T Consensus 11 ~~L~~L~l~~n~l-~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred ccchhhhcccCch-hhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 4455555555555 333 22344555555555555555555555555544443333333321 2358888
Q ss_pred ccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccC
Q 001226 319 LSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEG 398 (1119)
Q Consensus 319 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 398 (1119)
+++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++
T Consensus 78 l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 78 LNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp CTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred ecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence 88888874 3432 3678888888888885 5543 3678888888888874 2221 1678888888888886
Q ss_pred CCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccc
Q 001226 399 AIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANIC 478 (1119)
Q Consensus 399 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 478 (1119)
+| .++.+++|++|++++|++++ +|..+ .+|++|++++|++++ +| . +..+++|+.|++++|.+++ +|...
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~-~~~l~~L~~L~l~~N~l~~-l~~~~- 214 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-E-LQNLPFLTAIYADNNSLKK-LPDLP- 214 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-C-CTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-c-ccCCCCCCEEECCCCcCCc-CCCCc-
Confidence 55 48888888888888888884 55433 478888888888875 44 2 4567888888888888876 44332
Q ss_pred cccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEE
Q 001226 479 VGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTML 558 (1119)
Q Consensus 479 ~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 558 (1119)
.+|+.|++++|+++ .+| .++.+++|++|++++|++++ +|.. .++|+.|++++|++++ +|.. +++|++|
T Consensus 215 --~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L 282 (454)
T 1jl5_A 215 --LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFL 282 (454)
T ss_dssp --TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred --CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEE
Confidence 58889999999888 677 48889999999999999886 4443 4788999999999886 5543 3789999
Q ss_pred eccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCc
Q 001226 559 DFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLS 638 (1119)
Q Consensus 559 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 638 (1119)
++++|++++ +|.. .++|+.|++++|++.+ ++.. .++|++|++++|++++ +|.. +++|+.|++++|+++
T Consensus 283 ~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 283 DVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp ECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 999999985 3321 1578999999999985 3321 2589999999999986 6665 478999999999998
Q ss_pred cCCCccccccccccEeecCCcccCC--CccccchhhccccceeeeccccccCCcccccccccccceeeccCceecc--cC
Q 001226 639 GAIPDAFSSVQSLFELQLGSNIFDG--SIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSG--EI 714 (1119)
Q Consensus 639 ~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g--~i 714 (1119)
.+|. .+++|+.|++++|++++ .+|.++.. ++.|++.|.+|.. +++|+.||+++|+++| .|
T Consensus 351 -~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~---------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~i 414 (454)
T 1jl5_A 351 -EVPE---LPQNLKQLHVEYNPLREFPDIPESVED---------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDI 414 (454)
T ss_dssp -CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE---------EECCC-------------------------------
T ss_pred -cccc---hhhhccEEECCCCCCCcCCCChHHHHh---------hhhcccccccccc---cCcCCEEECCCCcCCccccc
Confidence 4666 47889999999999998 77776543 4567888888874 5789999999999998 78
Q ss_pred CccccccccceEEecccccccccCCCccccc
Q 001226 715 PTEVNNMVSLYFVNISFNHFSGKLPASWTTL 745 (1119)
Q Consensus 715 p~~~~~~~~l~~l~ls~N~~~g~~p~~~~~~ 745 (1119)
|+++ +.+.+++|.+.+++|.+...+
T Consensus 415 P~sl------~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 415 PESV------EDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp -------------------------------
T ss_pred hhhH------hheeCcCcccCCccccCHHHh
Confidence 8654 456788999999888654443
No 42
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-42 Score=397.71 Aligned_cols=262 Identities=23% Similarity=0.258 Sum_probs=198.2
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeec------CCce
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTK------DEHG 902 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~~ 902 (1119)
+|+..+.||+|+||+||+|+++.+|+.||||+++... ..+.+|+++|+.++|||||++++++.. .+..
T Consensus 55 ~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~ 134 (398)
T 4b99_A 55 EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSV 134 (398)
T ss_dssp SEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCE
T ss_pred CeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEE
Confidence 5777899999999999999999999999999986432 346789999999999999999998753 3678
Q ss_pred EEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccc
Q 001226 903 FIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKL 982 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~ 982 (1119)
|+|||||+ |+|.+++...+ .+++..++.++.||+.||+|||++ +||||||||+|||++.++.+|++|||+|+.
T Consensus 135 ~ivmE~~~-g~L~~~i~~~~---~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~ 207 (398)
T 4b99_A 135 YVVLDLME-SDLHQIIHSSQ---PLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARG 207 (398)
T ss_dssp EEEEECCS-EEHHHHHTSSS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEeCCC-CCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceeee
Confidence 99999995 67999998754 499999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCC--CCCcccccccCCCcccccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccc-
Q 001226 983 ISDSH--SSSTRSAIVGSLGYIAPENAYST-RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHE- 1058 (1119)
Q Consensus 983 ~~~~~--~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~- 1058 (1119)
..... ........+||+.|+|||++.+. .++.++||||+||++|||++|+.||......+. ..............
T Consensus 208 ~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~-l~~I~~~~g~p~~~~ 286 (398)
T 4b99_A 208 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQ-LQLIMMVLGTPSPAV 286 (398)
T ss_dssp C-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHH-HHHHHHHHCCCCGGG
T ss_pred cccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHH-HHHHHHhcCCCChHH
Confidence 64432 12234457899999999988775 569999999999999999999999975311100 00000000000000
Q ss_pred --------ccccccccccCCCchH-----HHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1059 --------CICFLDREISFWDSDD-----QLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1059 --------~~~~~~~~~~~~~~~~-----~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
....+ ..+......+ ...+.++.+++.+||+.||++|||++|+++|
T Consensus 287 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 345 (398)
T 4b99_A 287 IQAVGAERVRAYI-QSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH 345 (398)
T ss_dssp TC-----CHHHHH-HSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred hhhhhhhhhhhhh-hcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 00000 0000000000 1123467899999999999999999999986
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.7e-41 Score=401.31 Aligned_cols=367 Identities=21% Similarity=0.213 Sum_probs=213.4
Q ss_pred CCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccc-cCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEE
Q 001226 264 LQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNG-TISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLL 342 (1119)
Q Consensus 264 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 342 (1119)
++|++|+|++|++++..|..|.++++|++|+|++|.+.+ +.+..|..+++|++|+|++|++++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 456666666666665556666666666666666665542 3344556666666666666666555555566666666666
Q ss_pred ccCCcccCCCCC--CCCCCCCCcEEEcccCcCcccCchh-hhcccccceeeccCccccCCCCcccccc--CcceEEEeec
Q 001226 343 LFNNRLQGTLPP--ELGNCGSLVDLRLQHNFIGGTIPPE-ICNLAKLEVLYLFNNRIEGAIPHQIGRM--SKLVELALYN 417 (1119)
Q Consensus 343 L~~N~l~~~~~~--~l~~l~~L~~L~L~~N~i~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~ 417 (1119)
+++|++++..+. .+..+++|++|++++|++++..|.. +.++++|++|++++|++++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 666665543322 2555566666666666655554443 5555666666666666555555555544 4555555555
Q ss_pred ccccccCCcc--------ccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeecc
Q 001226 418 NRLTGRIPPD--------ITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLG 489 (1119)
Q Consensus 418 N~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~ 489 (1119)
|.+.+..+.. +..+++|+.|++++|++++..+..+...+ ..++|+.|+++
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~----------------------~~~~L~~L~l~ 247 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI----------------------AGTKIQSLILS 247 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT----------------------TTCCEEEEECT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc----------------------cccceeeEeec
Confidence 5555332222 12334445555555544444433332211 01334444444
Q ss_pred CccccCCCCccccccccccEEEeccCccccCCCccccC--CCCcceeeccCcccCCCCCccccccccceEEeccCCcccC
Q 001226 490 NNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLER--NPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSG 567 (1119)
Q Consensus 490 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 567 (1119)
+|.+.+... ..+.+.+..+..+.. .++|+.|++++|++++.+|..++.+++|++|+|++|++++
T Consensus 248 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 248 NSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp TCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 443332110 011111111112221 2456666666666666666667777777777777777776
Q ss_pred CCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccc
Q 001226 568 SIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSS 647 (1119)
Q Consensus 568 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 647 (1119)
..|..|.++++|++|+|++|++.+..|..+..+++|++|||++|++++..|..+..+++|++|+|++|++++..+..|..
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 66777777777777777777777666677777777777777777777766777777777777777777777666666777
Q ss_pred cccccEeecCCcccCCCcc
Q 001226 648 VQSLFELQLGSNIFDGSIP 666 (1119)
Q Consensus 648 l~~L~~L~L~~N~l~~~~p 666 (1119)
+++|+.|++++|++++..|
T Consensus 394 l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCBCCCTT
T ss_pred CCcccEEEccCCCcccCCC
Confidence 7777777777777776665
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.6e-41 Score=401.38 Aligned_cols=381 Identities=18% Similarity=0.180 Sum_probs=203.0
Q ss_pred eeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCC-CCCCCCCCCCcEEEcccC
Q 001226 292 KLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTL-PPELGNCGSLVDLRLQHN 370 (1119)
Q Consensus 292 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~L~~N 370 (1119)
.++.+++.++.++. + .++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|+|++|
T Consensus 14 ~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 45555555553322 1 145566666666665555555566666666666666554332 344555555555555555
Q ss_pred cCcccCchhhhcccccceeeccCccccCCCCcc--ccccCcceEEEeecccccccCCcc-ccCCCCcCEEEccCccCccc
Q 001226 371 FIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQ--IGRMSKLVELALYNNRLTGRIPPD-ITRLRNLQFLSLAHNHLTGE 447 (1119)
Q Consensus 371 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 447 (1119)
++++..|..|.++++|++|+|++|++++..+.. +..+++|++|++++|++++..|.. +.++++|++|++++|++++
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~- 168 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS- 168 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC-
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc-
Confidence 555555555555555555555555555433222 455555555555555555444433 4445555555555555443
Q ss_pred chhhhhccCCccceeccccceeeCccCCccccc--cccceeeccCccccCCCCcc--------ccccccccEEEeccCcc
Q 001226 448 VALELGKHFPYLSRLDLTGNSFYGPIPANICVG--TNLFVLVLGNNRFNGSFPIE--------IGKCSSLRRVILSNNLL 517 (1119)
Q Consensus 448 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~--~~L~~L~L~~N~l~~~~p~~--------~~~l~~L~~L~Ls~N~l 517 (1119)
..|..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++
T Consensus 169 ------------------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 169 ------------------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp ------------------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred ------------------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 333333322 34444444444444322222 12344555555555555
Q ss_pred ccCCCccccCC---CCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCc--ccccEEEcccCcccCc
Q 001226 518 QGSLPATLERN---PGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNL--ENLQILRLSANKLDGR 592 (1119)
Q Consensus 518 ~~~~p~~~~~l---~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~ 592 (1119)
.+..|..+... ++|+.|++++|.+.+.. +..+.+.+..+..+.++ ++|+.|++++|++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCcccccc
Confidence 54444433322 44444444444433211 11122222222233322 4566666666666655
Q ss_pred CCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhh
Q 001226 593 IPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKL 672 (1119)
Q Consensus 593 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 672 (1119)
+|..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..|..+++|++|+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~----------------- 353 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD----------------- 353 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE-----------------
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE-----------------
Confidence 566666666666666666666655555666666666666666666655566666666665544
Q ss_pred ccccceeeeccccccCCcccccccccccceeeccCceecccCCccccccccceEEecccccccccCCC
Q 001226 673 HHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVNNMVSLYFVNISFNHFSGKLPA 740 (1119)
Q Consensus 673 ~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~l~~l~ls~N~~~g~~p~ 740 (1119)
+++|++++..|..|+.+++|++|+|++|+|++..|..+..+++|+.|++++|+++|.+|.
T Consensus 354 --------Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 --------LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp --------CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred --------CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 444444445566677777777777777777755445556777777777777777777774
No 45
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=5.6e-42 Score=390.04 Aligned_cols=195 Identities=23% Similarity=0.381 Sum_probs=167.3
Q ss_pred HhhCCceeeecCCccEEEEEeC---CCceEEEEEecccc--cccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSN---NSRKHWAVKKLNRS--ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~---~~~~~vavK~~~~~--~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+|+..++||+|+||+||+|+++ .+++.||||++... ...+.+|+++++.+ +|||||++++++.+++..|+||||
T Consensus 22 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~ 101 (361)
T 4f9c_A 22 VFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPY 101 (361)
T ss_dssp TCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEEC
T ss_pred cEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeC
Confidence 4777899999999999999875 45789999988543 34577899999988 699999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC-CceEEEeccccccccCCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE-LEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~-~~vkl~DfGla~~~~~~~ 987 (1119)
+++|+|.+++. .+++.+++.++.|++.|++|||++ ||+||||||+|||++.+ +.+||+|||+|+...+..
T Consensus 102 ~~g~~L~~~~~------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~ 172 (361)
T 4f9c_A 102 LEHESFLDILN------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTK 172 (361)
T ss_dssp CCCCCHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCS
T ss_pred CCcccHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCcc
Confidence 99999999984 288999999999999999999999 99999999999999877 799999999998654321
Q ss_pred CC--------------------------CcccccccCCCcccccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 001226 988 SS--------------------------STRSAIVGSLGYIAPENAYST-RLTEKSDVYSYGVILFELLFRKMPVDPS 1038 (1119)
Q Consensus 988 ~~--------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~ 1038 (1119)
.. ......+||+.|+|||++.+. .|+.++||||+||++|||++|+.||...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~ 250 (361)
T 4f9c_A 173 IELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKA 250 (361)
T ss_dssp CGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred ccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCC
Confidence 10 112345799999999998775 5899999999999999999999999654
No 46
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=6.9e-42 Score=407.91 Aligned_cols=245 Identities=27% Similarity=0.309 Sum_probs=198.3
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHH---HHHHhhcCCCCEEEEeeeeecCCceEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVE---IRTLSLVRHRNILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E---~~~l~~l~h~niv~l~~~~~~~~~~~l 904 (1119)
+|+..++||+|+||+||+|+++.+|+.||||++++. .....+| +.+++.++|||||+++++|.+++..|+
T Consensus 190 df~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lyl 269 (689)
T 3v5w_A 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSF 269 (689)
T ss_dssp GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEE
T ss_pred HeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEE
Confidence 467779999999999999999999999999998532 1223334 556667789999999999999999999
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
||||++||+|.+++...+ .+++..++.++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+...
T Consensus 270 VmEy~~GGdL~~~l~~~~---~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~ 343 (689)
T 3v5w_A 270 ILDLMNGGDLHYHLSQHG---VFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFS 343 (689)
T ss_dssp EECCCCSCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred EEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeecC
Confidence 999999999999998765 499999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCCCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
.. .....+||+.|||||++.. ..|+.++||||+||++|||++|+.||......+. ........
T Consensus 344 ~~----~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~--~~i~~~i~---------- 407 (689)
T 3v5w_A 344 KK----KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK--HEIDRMTL---------- 407 (689)
T ss_dssp SC----CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCH--HHHHHHHH----------
T ss_pred CC----CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH--HHHHHhhc----------
Confidence 42 2234689999999999864 5799999999999999999999999964321111 11111111
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCC-----HHHHHHH
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPS-----MREVVGF 1105 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~ell~~ 1105 (1119)
......+ ...+.++.+++.+||+.||++|++ ++||++|
T Consensus 408 ~~~~~~p----~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H 450 (689)
T 3v5w_A 408 TMAVELP----DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES 450 (689)
T ss_dssp HCCCCCC----TTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred CCCCCCC----ccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence 1111111 112456789999999999999998 7888765
No 47
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=2.7e-41 Score=408.00 Aligned_cols=249 Identities=20% Similarity=0.289 Sum_probs=205.3
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEecc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
.+|+..+.||+|+||+||+|.++.+|+.||+|++... ...+.+|+.+|+.++|||||++++++.+++..|+|||||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~ 236 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 236 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence 4688889999999999999999999999999988543 345788999999999999999999999999999999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC--CceEEEeccccccccCCC
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE--LEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~--~~vkl~DfGla~~~~~~~ 987 (1119)
+||+|.+++..... .+++..+..++.||+.||+|||++ +|+||||||+|||++.+ +.+||+|||+|+.....
T Consensus 237 ~gg~L~~~i~~~~~--~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~- 310 (573)
T 3uto_A 237 SGGELFEKVADEHN--KMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK- 310 (573)
T ss_dssp CCCBHHHHHTCTTS--CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT-
T ss_pred CCCcHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccCC-
Confidence 99999999975432 489999999999999999999999 99999999999999864 89999999999977542
Q ss_pred CCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREI 1067 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1119)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||...... ..... ... ...
T Consensus 311 --~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~----~~~~~-i~~----------~~~ 373 (573)
T 3uto_A 311 --QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD----ETLRN-VKS----------CDW 373 (573)
T ss_dssp --SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH----HHHHH-HHT----------TCC
T ss_pred --CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH----HHHHH-HHh----------CCC
Confidence 2334568999999999999999999999999999999999999999743111 00000 000 000
Q ss_pred cCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1068 SFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1068 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..........+.++.+++.+||+.||++|||++|+++|
T Consensus 374 ~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~H 411 (573)
T 3uto_A 374 NMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH 411 (573)
T ss_dssp CCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred CCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 00001111224567899999999999999999999986
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4e-40 Score=370.60 Aligned_cols=178 Identities=30% Similarity=0.535 Sum_probs=124.7
Q ss_pred ccCCCcHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCce--eeeeeeecCC--CceEEEecCCCcccc--cCccchhhhcc
Q 001226 21 VSSPPSAISLVQFLDSLPKQSQSHLPWNQSVSTSAPCK--WSGVSCYNNS--SSLKALNLSGFGLSG--VLNNSISYICK 94 (1119)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~C~~~~--~~v~~l~l~~~~l~~--~~~~~~~~~~~ 94 (1119)
.|.++|++||++||+++.++. .+.+|+. +++||. |.||+|+..+ ++|+.|+|++++++| .++.. +..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~---l~~ 74 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS---LAN 74 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGG---GGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChh---HhC
Confidence 367889999999999997654 6779965 357898 9999998654 678888887777776 55532 445
Q ss_pred CCcccEEEcCC-CcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCccccccccccee
Q 001226 95 NQHLLSLDLSG-NEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESI 173 (1119)
Q Consensus 95 l~~l~~L~Ls~-n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 173 (1119)
+++|++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..+.++++|++|+|++|.+++.+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 66777777774 66666677777777777777777777766667667777777777777777766666666666666666
Q ss_pred eecccccccccCccCCCcc-cccEEEecccccc
Q 001226 174 GFHNNFLNGELPNDICSLP-KLKSLYLNTNNLT 205 (1119)
Q Consensus 174 ~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~ 205 (1119)
++++|.+++.+|..++.++ +|++|++++|+++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 6666666655665555555 5555555555554
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-39 Score=381.30 Aligned_cols=215 Identities=20% Similarity=0.191 Sum_probs=122.2
Q ss_pred CccccccCCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCccccc
Q 001226 230 SLPTSLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQIS 309 (1119)
Q Consensus 230 ~lp~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 309 (1119)
..+..++++++|++|++++|.+++. + .+..+++|++|+|++|++++. | +..+++|++|++++|++++. + ++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred ccccChhHcCCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cC
Confidence 3444566666666666666666643 2 456666666666666666653 2 56666666666666666654 1 55
Q ss_pred CCCCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhccccccee
Q 001226 310 HCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVL 389 (1119)
Q Consensus 310 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L 389 (1119)
.+++|++|++++|++++ +| ++.+++|++|++++|++++. .++.+++|++|++++|...+.+ .+..+++|+.|
T Consensus 104 ~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 66666666666666664 22 56666666666666666642 2555666666666666433233 35555666666
Q ss_pred eccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceecccccee
Q 001226 390 YLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSF 469 (1119)
Q Consensus 390 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 469 (1119)
++++|++++. | +..+++|+.|++++|++++. .+..+++|+.|++++|++++ +| ...++.|+.|++++|++
T Consensus 176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCC
T ss_pred ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcC
Confidence 6666666542 2 55555666666666665542 25555555555555555554 22 22344455555555554
Q ss_pred eC
Q 001226 470 YG 471 (1119)
Q Consensus 470 ~~ 471 (1119)
++
T Consensus 246 ~~ 247 (457)
T 3bz5_A 246 TE 247 (457)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5e-39 Score=380.01 Aligned_cols=359 Identities=18% Similarity=0.180 Sum_probs=209.2
Q ss_pred hhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCC
Q 001226 259 IFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSL 338 (1119)
Q Consensus 259 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 338 (1119)
.+..+++|++|++++|++++. | .+..+++|++|++++|+++++ + ++.+++|++|++++|++++. + ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 445556666666666666643 3 456666666666666666653 1 55566666666666666542 2 5555666
Q ss_pred CeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeecc
Q 001226 339 NSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNN 418 (1119)
Q Consensus 339 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 418 (1119)
++|++++|++++. + ++.+++|++|++++|++++. .+..+++|++|++++|+..+.+ .+..+++|++|++++|
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 6666666665542 2 55555566666666655542 2455555555555555333232 2444555555555555
Q ss_pred cccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCC
Q 001226 419 RLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFP 498 (1119)
Q Consensus 419 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p 498 (1119)
++++ +| +..+++|+.|++++|+++ +. .+..+++|+.|++++|++++ +|
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~-------------------------~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNIT-------------------------KL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCS-------------------------CC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred ccce-ec--cccCCCCCEEECcCCcCC-------------------------ee---ccccCCCCCEEECcCCcccc-cC
Confidence 5553 22 444455555555555444 32 24445556666666666664 34
Q ss_pred ccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCccc
Q 001226 499 IEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLEN 578 (1119)
Q Consensus 499 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 578 (1119)
++.+++|+.|++++|++++.. +..+++|+.|++++| +|+.|++++|.+.+.+| ++++++
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~ 287 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRK 287 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTT
T ss_pred --ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cccccc
Confidence 556666666666666666543 344556666666554 34556677777666665 456677
Q ss_pred ccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCC
Q 001226 579 LQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGS 658 (1119)
Q Consensus 579 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 658 (1119)
|+.|+|++|.+.+.+|. ..++|+.|++++| ++|++|+|++|+|++. | ++++++|+.|++++
T Consensus 288 L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVN 348 (457)
T ss_dssp CCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCS
T ss_pred CCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCC
Confidence 77777777776666664 3455666666655 4677777777777763 3 77777777777777
Q ss_pred cccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecccCCcccc
Q 001226 659 NIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVN 719 (1119)
Q Consensus 659 N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 719 (1119)
|++++ +| .+ ..|++++|+++|. +++..|+.++|++|+|+|.||+.+.
T Consensus 349 N~l~~-l~----~L----~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 349 AHIQD-FS----SV----GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp SCCCB-CT----TG----GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CCCCC-cc----cc----ccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 77764 21 12 1255667777764 3556677777777777777776653
No 51
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=3.5e-39 Score=365.14 Aligned_cols=273 Identities=33% Similarity=0.538 Sum_probs=219.6
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMP 910 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 910 (1119)
+|+..+.||+|+||.||+|.++ +++.||||++... ...+.+|+.+++.++||||+++++++.+++..++||||++
T Consensus 40 ~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 118 (321)
T 2qkw_B 40 NFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYME 118 (321)
T ss_dssp CCSCCCCSCBCSSSEEEEEECT-TCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECCT
T ss_pred ccCccceeecCCCeeEEEEEEC-CCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcCC
Confidence 5667789999999999999975 4889999988543 2457899999999999999999999999999999999999
Q ss_pred CCCHHHhhccCCC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCC
Q 001226 911 GGTLFNVLHQNEP-RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSS 989 (1119)
Q Consensus 911 ~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~ 989 (1119)
+|+|.+++..... ...+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++........
T Consensus 119 ~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 195 (321)
T 2qkw_B 119 NGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKGTELDQT 195 (321)
T ss_dssp TCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCC
T ss_pred CCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeeccccccccccccc
Confidence 9999999976542 23589999999999999999999999 9999999999999999999999999999876543333
Q ss_pred CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCC-ceeehhhhhhccccccccccccccc
Q 001226 990 STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDT-DIVTWTRWKLQENHECICFLDREIS 1068 (1119)
Q Consensus 990 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1119)
.......||+.|+|||.+.+..++.++||||+||++|||++|+.||......+. ....|.... .........+++...
T Consensus 196 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 274 (321)
T 2qkw_B 196 HLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVES-HNNGQLEQIVDPNLA 274 (321)
T ss_dssp CCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHH-HTTTCCCSSSSSSCT
T ss_pred ccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhc-cccccHHHhcChhhc
Confidence 334455689999999999888899999999999999999999999976433221 111111111 111222333333332
Q ss_pred CCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1069 FWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1069 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
. ......+..+.+++.+||+.||++|||++|++++|+.+.+..+
T Consensus 275 ~--~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~~ 318 (321)
T 2qkw_B 275 D--KIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQE 318 (321)
T ss_dssp T--CSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSC
T ss_pred c--ccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhccc
Confidence 2 2234567789999999999999999999999999998876554
No 52
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=363.84 Aligned_cols=258 Identities=28% Similarity=0.458 Sum_probs=210.1
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEecc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
.+|+.+++||+|+||+||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++.+++..++||||+
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 89 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI 89 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence 3567789999999999999999999999999987532 345789999999999999999999999999999999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCC
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSS 989 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~ 989 (1119)
++++|.++++.... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++........
T Consensus 90 ~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 164 (310)
T 3s95_A 90 KGGTLRGIIKSMDS--QYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQ 164 (310)
T ss_dssp TTCBHHHHHHHCCT--TSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC-----
T ss_pred CCCcHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceeccccccc
Confidence 99999999987543 489999999999999999999999 9999999999999999999999999999876443221
Q ss_pred C------------cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccc
Q 001226 990 S------------TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENH 1057 (1119)
Q Consensus 990 ~------------~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1119)
. ......||+.|+|||.+.+..++.++||||+|+++|||++|..|+.................
T Consensus 165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~----- 239 (310)
T 3s95_A 165 PEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGF----- 239 (310)
T ss_dssp ---------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHH-----
T ss_pred ccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhcc-----
Confidence 1 11245799999999999999999999999999999999999999875433222211111100
Q ss_pred cccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1058 ECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
.+.... ...+..+.+++.+||+.||++|||++++++.|++++..
T Consensus 240 -----~~~~~~------~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~ 283 (310)
T 3s95_A 240 -----LDRYCP------PNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH 283 (310)
T ss_dssp -----HHHTCC------TTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -----ccccCC------CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 000000 11123578999999999999999999999999998765
No 53
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=3.6e-39 Score=360.37 Aligned_cols=247 Identities=26% Similarity=0.374 Sum_probs=204.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccc----ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEecc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR----SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
.+|+..+.||+|+||+||+|.+..+++.||||++.. ....+.+|+.+++.++||||+++++++..++..++||||+
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 99 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL 99 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECC
Confidence 467888999999999999999999999999998843 2345788999999999999999999999999999999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCC
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSS 989 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~ 989 (1119)
++|+|.+++... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++.......
T Consensus 100 ~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 170 (297)
T 3fxz_A 100 AGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ-- 170 (297)
T ss_dssp TTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT--
T ss_pred CCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcc--
Confidence 999999999865 388999999999999999999999 99999999999999999999999999998765432
Q ss_pred CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 990 STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 990 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
.......||+.|+|||.+.+..++.++||||+||++|||++|+.||...... .......... .+..
T Consensus 171 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~----~~~~~~~~~~--------~~~~-- 236 (297)
T 3fxz_A 171 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL----RALYLIATNG--------TPEL-- 236 (297)
T ss_dssp CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHHHHHHHC--------SCCC--
T ss_pred cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH----HHHHHHHhCC--------CCCC--
Confidence 2334567999999999999999999999999999999999999999643110 0000000000 0000
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..+...+..+.+++.+||+.||++|||++|++++
T Consensus 237 --~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 270 (297)
T 3fxz_A 237 --QNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH 270 (297)
T ss_dssp --SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred --CCccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 1112234567899999999999999999999875
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.7e-38 Score=373.07 Aligned_cols=345 Identities=26% Similarity=0.360 Sum_probs=209.7
Q ss_pred CCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEE
Q 001226 263 LLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLL 342 (1119)
Q Consensus 263 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 342 (1119)
+.+|+.|+++++.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 3456666666666653 33 25556666666666666665443 5556666666666666554332 55555555555
Q ss_pred ccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeecccccc
Q 001226 343 LFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTG 422 (1119)
Q Consensus 343 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 422 (1119)
+++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|+++ |.+.+..+ +..+++|++|++++|.+++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCC
Confidence 55555553322 55555555555555555432 2 34455555555553 33332211 4444555555555554442
Q ss_pred cCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCcccc
Q 001226 423 RIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIG 502 (1119)
Q Consensus 423 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~ 502 (1119)
. ..+..++ +|++|++++|.+++..| +..+++|+.|++++|++++. ..+.
T Consensus 192 ~--~~l~~l~-------------------------~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 192 I--SVLAKLT-------------------------NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp C--GGGGGCT-------------------------TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred C--hhhccCC-------------------------CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhh
Confidence 1 2244444 44444444444444333 34455566666666665532 2456
Q ss_pred ccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEE
Q 001226 503 KCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQIL 582 (1119)
Q Consensus 503 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 582 (1119)
.+++|+.|++++|.+++..| +..+++|+.|++++|++++..+ +..+++|++|+|++|++++..| +..+++|+.|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 66777777777777765544 6667777777777777775433 6677778888888887775443 6777788888
Q ss_pred EcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccC
Q 001226 583 RLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFD 662 (1119)
Q Consensus 583 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 662 (1119)
+|++|++.+..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|.++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 888888876554 66778888888888888753 467777888888888888887766 777888888888888777
Q ss_pred C
Q 001226 663 G 663 (1119)
Q Consensus 663 ~ 663 (1119)
+
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 5
No 55
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=368.34 Aligned_cols=246 Identities=22% Similarity=0.341 Sum_probs=195.8
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
.+|+..+.||+|+||+||+|.+..+++.||||++... ...+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus 10 ~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~ 89 (347)
T 3zgw_A 10 KYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVLEY 89 (347)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred cCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEEeC
Confidence 3577789999999999999999999999999998532 34688999999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~ 988 (1119)
+++|+|.+++...+ .+++..++.++.|++.|++|||+. +|+||||||+||++++++.+||+|||++.......
T Consensus 90 ~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~- 162 (347)
T 3zgw_A 90 CPGGELFDYIISQD---RLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNK- 162 (347)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC------
T ss_pred CCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEeccCcccccCCC-
Confidence 99999999997755 389999999999999999999999 99999999999999999999999999987654322
Q ss_pred CCcccccccCCCcccccccCCCCC-CCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccc
Q 001226 989 SSTRSAIVGSLGYIAPENAYSTRL-TEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREI 1067 (1119)
Q Consensus 989 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1119)
........||+.|+|||.+.+..+ +.++||||+||++|||++|+.||.... ............. ..
T Consensus 163 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~-----~~~~~~~i~~~~~--------~~ 229 (347)
T 3zgw_A 163 DYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDN-----VMALYKKIMRGKY--------DV 229 (347)
T ss_dssp ---------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHHTCC--------CC
T ss_pred CccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHcCCC--------CC
Confidence 222344579999999999988775 899999999999999999999996421 1111111110000 01
Q ss_pred cCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1068 SFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1068 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
. ...+..+.+++.+||+.||++|||++|++++
T Consensus 230 p------~~~s~~~~~li~~~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 230 P------KWLSPSSILLLQQMLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp C------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred C------CCCCHHHHHHHHHHcccCHhHCcCHHHHhcC
Confidence 1 1123456789999999999999999999986
No 56
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=8e-39 Score=368.74 Aligned_cols=258 Identities=24% Similarity=0.433 Sum_probs=210.1
Q ss_pred HHhhCCceeeecCCccEEEEEeC-------CCceEEEEEeccccc-----ccHHHHHHHHhhc-CCCCEEEEeeeeecCC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSN-------NSRKHWAVKKLNRSE-----TNFDVEIRTLSLV-RHRNILRIVGSCTKDE 900 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~-------~~~~~vavK~~~~~~-----~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 900 (1119)
.+|+.++.||+|+||.||+|++. .++..||||+++... ..+.+|+.+++.+ +||||+++++++.+++
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~ 160 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG 160 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC
Confidence 46777899999999999999864 346789999996432 3578899999999 8999999999999999
Q ss_pred ceEEEEeccCCCCHHHhhccCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC
Q 001226 901 HGFIVTEYMPGGTLFNVLHQNEP-------------RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD 967 (1119)
Q Consensus 901 ~~~lV~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~ 967 (1119)
..|+||||+++|+|.+++..... ...+++..+..++.||++|++|||+. +|+||||||+||+++
T Consensus 161 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~ 237 (370)
T 2psq_A 161 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVT 237 (370)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEEC
Confidence 99999999999999999987542 23478999999999999999999999 999999999999999
Q ss_pred CCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCcee
Q 001226 968 SELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIV 1046 (1119)
Q Consensus 968 ~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~ 1046 (1119)
.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... ...
T Consensus 238 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~--~~~ 315 (370)
T 2psq_A 238 ENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--ELF 315 (370)
T ss_dssp TTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHH
T ss_pred CCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHH--HHH
Confidence 999999999999987765443334445567889999999999999999999999999999999 99998653111 110
Q ss_pred ehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1047 TWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
.. ..... ... .+...+..+.+++.+||+.||++||+++|++++|+++.+.
T Consensus 316 ---~~-~~~~~------~~~------~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~ 365 (370)
T 2psq_A 316 ---KL-LKEGH------RMD------KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 365 (370)
T ss_dssp ---HH-HHTTC------CCC------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ---HH-HhcCC------CCC------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 00 00000 000 1112345688999999999999999999999999998754
No 57
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=2.3e-39 Score=366.58 Aligned_cols=271 Identities=26% Similarity=0.357 Sum_probs=207.9
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc---ccHHHHHHHHhhcCCCCEEEEeeeeecCCc----eEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE---TNFDVEIRTLSLVRHRNILRIVGSCTKDEH----GFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----~~lV~ 906 (1119)
.+|+..++||+|+||+||+|++. ++.||||+++... ....+|+.+++.++||||+++++++.++.. .++||
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~ 101 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLIT 101 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred hhchhhheecccCceEEEEEEEC--CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEE
Confidence 46777899999999999999876 6899999986433 345668888999999999999999987543 69999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC-------CCCCeEecCCCCCCeEeCCCCceEEEeccc
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYD-------CVPQIIHRDIKSDNILLDSELEPKIGDFGM 979 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-------~~~~ivH~Dlkp~Nill~~~~~vkl~DfGl 979 (1119)
||+++|+|.++++... +++..+..++.|+++|++|||+. +.++|+||||||+||+++.++.+||+|||+
T Consensus 102 e~~~~g~L~~~l~~~~----~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~ 177 (322)
T 3soc_A 102 AFHEKGSLSDFLKANV----VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGL 177 (322)
T ss_dssp ECCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred ecCCCCCHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCc
Confidence 9999999999997643 89999999999999999999976 234899999999999999999999999999
Q ss_pred cccccCCCCCCcccccccCCCcccccccCCC-----CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhc
Q 001226 980 SKLISDSHSSSTRSAIVGSLGYIAPENAYST-----RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQ 1054 (1119)
Q Consensus 980 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1054 (1119)
++...............||+.|+|||.+.+. .++.++||||+||++|||++|+.||........ ..+......
T Consensus 178 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~--~~~~~~~~~ 255 (322)
T 3soc_A 178 ALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYM--LPFEEEIGQ 255 (322)
T ss_dssp CEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCC--CTTHHHHCS
T ss_pred ccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhc--cchhhhhcc
Confidence 9877654444344456799999999988763 456688999999999999999999976432211 111110000
Q ss_pred --ccccccc-----cccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1055 --ENHECIC-----FLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1055 --~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
....... ...+.+... ......+..+.+++.+||+.||++|||++|+++.|+++.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~~ 320 (322)
T 3soc_A 256 HPSLEDMQEVVVHKKKRPVLRDY-WQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLT 320 (322)
T ss_dssp SCCHHHHHHHHTTSCCCCCCCGG-GGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred CCchhhhhhhhhcccCCCCcccc-ccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 0000000 001111100 012234566899999999999999999999999999987653
No 58
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=7.7e-39 Score=363.34 Aligned_cols=280 Identities=34% Similarity=0.603 Sum_probs=221.5
Q ss_pred CCCCHHHHH----HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeee
Q 001226 826 RDLRYEDVI----RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSC 896 (1119)
Q Consensus 826 ~~~~~~~~~----~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~ 896 (1119)
+.+++.++. +|+..+.||+|+||.||+|.+. +++.||||++... ...+.+|+.+++.++||||+++++++
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 96 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 96 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCS-SSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEec-CCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence 345556654 5777799999999999999865 4889999998543 23688999999999999999999999
Q ss_pred ecCCceEEEEeccCCCCHHHhhccCCC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEE
Q 001226 897 TKDEHGFIVTEYMPGGTLFNVLHQNEP-RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIG 975 (1119)
Q Consensus 897 ~~~~~~~lV~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~ 975 (1119)
.+++..++||||+++|+|.++++.... ...+++..+..++.|++.|++|||+.+.++|+||||||+||+++.++.+||+
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~ 176 (326)
T 3uim_A 97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVG 176 (326)
T ss_dssp CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEEC
T ss_pred ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEec
Confidence 999999999999999999999987543 3358999999999999999999999877799999999999999999999999
Q ss_pred eccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCC---CCCCceeehhhhh
Q 001226 976 DFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSF---GEDTDIVTWTRWK 1052 (1119)
Q Consensus 976 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~---~~~~~~~~~~~~~ 1052 (1119)
|||+++...... ........||+.|+|||.+.+..++.++||||+||++|||++|+.||.... ........|....
T Consensus 177 Dfg~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 255 (326)
T 3uim_A 177 DFGLAKLMDYKD-THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGL 255 (326)
T ss_dssp CCSSCEECCSSS-SCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTT
T ss_pred cCccccccCccc-ccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHH
Confidence 999998765422 223344569999999999988889999999999999999999999996321 1111112222111
Q ss_pred hcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccc
Q 001226 1053 LQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLN 1110 (1119)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~ 1110 (1119)
. .........+..... ......+..+.+++.+||+.||++|||++|++++|++..
T Consensus 256 ~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~ 310 (326)
T 3uim_A 256 L-KEKKLEALVDVDLQG--NYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDG 310 (326)
T ss_dssp T-SSCCSTTSSCTTCTT--SCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred h-hchhhhhhcChhhcc--ccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence 1 112222333333322 223556778999999999999999999999999998643
No 59
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=3.6e-39 Score=364.66 Aligned_cols=243 Identities=23% Similarity=0.349 Sum_probs=202.2
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+|+..+.||+|+||.||+|.+..+++.||||++.... ..+.+|+++++.++||||+++++++..++..|+||||
T Consensus 16 ~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~ 95 (328)
T 3fe3_A 16 NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEY 95 (328)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred CEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEEC
Confidence 5777799999999999999999999999999985432 3467899999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~ 988 (1119)
+++|+|.+++...+ .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 96 ~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~-- 167 (328)
T 3fe3_A 96 ASGGEVFDYLVAHG---RMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG-- 167 (328)
T ss_dssp CTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS--
T ss_pred CCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCCC--
Confidence 99999999998765 389999999999999999999999 9999999999999999999999999999866432
Q ss_pred CCcccccccCCCcccccccCCCCCC-CcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccc
Q 001226 989 SSTRSAIVGSLGYIAPENAYSTRLT-EKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREI 1067 (1119)
Q Consensus 989 ~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1119)
.......||+.|+|||.+.+..++ .++||||+||++|||++|+.||.... .......... ...
T Consensus 168 -~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~~~~~~i~~----------~~~ 231 (328)
T 3fe3_A 168 -GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN-----LKELRERVLR----------GKY 231 (328)
T ss_dssp -CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHH----------CCC
T ss_pred -CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC-----HHHHHHHHHh----------CCC
Confidence 233456799999999998887765 78999999999999999999996431 1111111100 001
Q ss_pred cCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1068 SFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1068 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
. .+...+.++.+++.+||+.||++|||++|++++
T Consensus 232 ~----~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 232 R----IPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp C----CCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred C----CCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0 011123467899999999999999999999986
No 60
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=5.2e-38 Score=353.24 Aligned_cols=276 Identities=30% Similarity=0.519 Sum_probs=219.0
Q ss_pred CCCCHHHHHHhhC----------CceeeecCCccEEEEEeCCCceEEEEEecccc--------cccHHHHHHHHhhcCCC
Q 001226 826 RDLRYEDVIRATE----------GRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS--------ETNFDVEIRTLSLVRHR 887 (1119)
Q Consensus 826 ~~~~~~~~~~~~~----------~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--------~~~~~~E~~~l~~l~h~ 887 (1119)
..+++.++.+++. ++.||+|+||.||+|.+ +++.||||++... ...+.+|+.+++.++||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 4566667665543 38899999999999987 3789999988532 24578899999999999
Q ss_pred CEEEEeeeeecCCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC
Q 001226 888 NILRIVGSCTKDEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD 967 (1119)
Q Consensus 888 niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~ 967 (1119)
||+++++++.+++..++||||+++++|.+++........+++..+..++.|+++|+.|||+. +|+||||||+||+++
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~ 167 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLD 167 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEC
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEc
Confidence 99999999999999999999999999999998655445689999999999999999999999 999999999999999
Q ss_pred CCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceee
Q 001226 968 SELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVT 1047 (1119)
Q Consensus 968 ~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 1047 (1119)
.++.+||+|||+++...............||+.|+|||.+.+ .++.++||||+|+++|||++|+.||...... .....
T Consensus 168 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~~ 245 (307)
T 2nru_A 168 EAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREP-QLLLD 245 (307)
T ss_dssp TTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSS-SBTTH
T ss_pred CCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcch-HHHHH
Confidence 999999999999987654333333345678999999997764 5889999999999999999999999754222 11112
Q ss_pred hhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccc
Q 001226 1048 WTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLND 1111 (1119)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~ 1111 (1119)
+..............+++.+.. .....+..+.+++.+||+.||++|||+++++++|+++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 246 IKEEIEDEEKTIEDYIDKKMND---ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHHHTTSCCHHHHSCSSCSC---CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHHHhhhhhhhhhhhccccccc---cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 2221112222233344443332 234566788999999999999999999999999998864
No 61
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=358.28 Aligned_cols=269 Identities=18% Similarity=0.258 Sum_probs=211.7
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCC--ceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDE--HGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lV~e 907 (1119)
+|+..++||+|+||+||+|.+..+++.||||+++.. ...+.+|+++++.++||||+++++++.... ..++|||
T Consensus 10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e 89 (319)
T 4euu_A 10 LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIME 89 (319)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEE
T ss_pred CEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEe
Confidence 466778999999999999999999999999998642 245678999999999999999999987655 7799999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe----CCCCceEEEeccccccc
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL----DSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill----~~~~~vkl~DfGla~~~ 983 (1119)
|+++++|.+++........+++..+..++.|+++|++|||+. +|+||||||+||++ +.++.+||+|||+++..
T Consensus 90 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~ 166 (319)
T 4euu_A 90 FCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL 166 (319)
T ss_dssp CCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEEC
T ss_pred CCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCceec
Confidence 999999999998766555599999999999999999999999 99999999999999 78888999999999876
Q ss_pred cCCCCCCcccccccCCCcccccccC--------CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcc
Q 001226 984 SDSHSSSTRSAIVGSLGYIAPENAY--------STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 984 ~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
.... ......||+.|+|||.+. +..++.++||||+||++|||++|+.||....................
T Consensus 167 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~ 243 (319)
T 4euu_A 167 EDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGK 243 (319)
T ss_dssp CTTC---CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHC
T ss_pred CCCC---ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCC
Confidence 5432 223457899999999765 57789999999999999999999999975433222211111111111
Q ss_pred ccccc----cc------ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcc
Q 001226 1056 NHECI----CF------LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKL 1109 (1119)
Q Consensus 1056 ~~~~~----~~------~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~ 1109 (1119)
..... .. ..+.++.........+..+.+++.+||+.||++|||++|++++...-
T Consensus 244 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 244 PSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp CTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred CcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 00000 00 01111222233456677889999999999999999999999998754
No 62
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=1.3e-38 Score=364.48 Aligned_cols=247 Identities=23% Similarity=0.302 Sum_probs=202.7
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 904 (1119)
+|+..+.||+|+||.||+|.++.+++.||+|+++.. ...+.+|+.+++.++||||+++++++.++...|+
T Consensus 13 ~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 92 (361)
T 2yab_A 13 FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVVL 92 (361)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEE
Confidence 467789999999999999999999999999988532 2457899999999999999999999999999999
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC----ceEEEecccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL----EPKIGDFGMS 980 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~----~vkl~DfGla 980 (1119)
||||+++|+|.+++.... .+++..+..++.||+.|+.|||+. +|+||||||+||+++.++ .+||+|||++
T Consensus 93 v~e~~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DFG~a 166 (361)
T 2yab_A 93 ILELVSGGELFDFLAQKE---SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (361)
T ss_dssp EEECCCSCBHHHHHTTCS---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCSSC
T ss_pred EEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEecCCc
Confidence 999999999999997654 489999999999999999999999 999999999999998877 7999999999
Q ss_pred ccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccc
Q 001226 981 KLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECI 1060 (1119)
Q Consensus 981 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1119)
+...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... .. .. ...
T Consensus 167 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~--~~--~~-~~i-------- 230 (361)
T 2yab_A 167 HEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QE--TL-ANI-------- 230 (361)
T ss_dssp EECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--HH--HH-HHH--------
T ss_pred eEcCCCC---ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH--HH--HH-HHH--------
Confidence 8765422 23345799999999999988999999999999999999999999964311 00 00 000
Q ss_pred ccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1061 CFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...............+..+.+++.+||+.||++|||++|+++|
T Consensus 231 --~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h 273 (361)
T 2yab_A 231 --TAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (361)
T ss_dssp --HTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred --HhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000000000011224567899999999999999999999864
No 63
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=2.5e-39 Score=374.30 Aligned_cols=256 Identities=25% Similarity=0.387 Sum_probs=208.9
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||+++.. ...+.+|+++++.++||||+++++++.+++..++||||
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 193 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMEL 193 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEc
Confidence 3567789999999999999999988999999998643 24578899999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~ 988 (1119)
+++|+|.++++..+. .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 194 ~~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~ 268 (377)
T 3cbl_A 194 VQGGDFLTFLRTEGA--RLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY 268 (377)
T ss_dssp CTTCBHHHHHHHHGG--GCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEE
T ss_pred CCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCCCce
Confidence 999999999986542 488999999999999999999999 999999999999999999999999999986544322
Q ss_pred CCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccc
Q 001226 989 SSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREI 1067 (1119)
Q Consensus 989 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1119)
........+++.|+|||.+.+..++.++|||||||++|||++ |+.||...... ..... ..... ..
T Consensus 269 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~--~~~~~----~~~~~--------~~ 334 (377)
T 3cbl_A 269 AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ--QTREF----VEKGG--------RL 334 (377)
T ss_dssp ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH--HHHHH----HHTTC--------CC
T ss_pred eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHH----HHcCC--------CC
Confidence 222223346778999999988889999999999999999998 99998653211 00000 00000 00
Q ss_pred cCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1068 SFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1068 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
. .+...+..+.+++.+||+.||++|||++++++.|+++.++
T Consensus 335 ~----~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 335 P----CPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp C----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred C----CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 0 0111245678999999999999999999999999998764
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.5e-37 Score=365.05 Aligned_cols=347 Identities=24% Similarity=0.333 Sum_probs=247.5
Q ss_pred cCCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCc
Q 001226 236 SNCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQ 315 (1119)
Q Consensus 236 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 315 (1119)
..+++|++|++++|.+.. ++ .+..+++|++|+|++|++++..| +.++++|++|++++|++++..+ +..+++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hHhccccEEecCCCCCcc-Cc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 346789999999999874 33 37889999999999999997655 9999999999999999997766 99999999
Q ss_pred EEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCcc
Q 001226 316 VIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNR 395 (1119)
Q Consensus 316 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~ 395 (1119)
+|++++|.+++..+ +.++++|++|++++|.+++. + .+..+++|++|+++ |.+.+. ..+.++++|+.|++++|.
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 99999999996543 99999999999999999853 3 58999999999997 555533 248999999999999999
Q ss_pred ccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCC
Q 001226 396 IEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPA 475 (1119)
Q Consensus 396 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 475 (1119)
+++. ..+..+++|++|++++|.+++..| +..+++|+.|++++|++++. + .+..+++|+.|++++|.+++..|
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-G--TLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-h--hhhcCCCCCEEECCCCccccchh-
Confidence 9864 348899999999999999996544 78899999999999998753 1 23456666666666666654433
Q ss_pred ccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccc
Q 001226 476 NICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNL 555 (1119)
Q Consensus 476 ~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L 555 (1119)
+..+++|+.|++++|++++..+ +..+++|+.|++++|+++ +..| +..+++|
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~------------------------~~~~--~~~l~~L 311 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE------------------------DISP--ISNLKNL 311 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS------------------------CCGG--GGGCTTC
T ss_pred -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc------------------------Cchh--hcCCCCC
Confidence 4445555555555555553222 444455555555555444 3322 4455555
Q ss_pred eEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCc
Q 001226 556 TMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQEN 635 (1119)
Q Consensus 556 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 635 (1119)
++|+|++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 555555555554433 44555555555555555532 245555555666666665555444 555555666666666
Q ss_pred cCcc
Q 001226 636 NLSG 639 (1119)
Q Consensus 636 ~l~~ 639 (1119)
++++
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 5554
No 65
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=1.2e-38 Score=358.09 Aligned_cols=256 Identities=30% Similarity=0.446 Sum_probs=198.5
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+|+..+.||+|+||+||+|++. ++.||||++.... ..+.+|+.++++++||||+++++++.+++..++||||
T Consensus 38 ~y~i~~~lG~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 115 (309)
T 3p86_A 38 DLNIKEKIGAGSFGTVHRAEWH--GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEY 115 (309)
T ss_dssp GEEEEEEEEECSSEEEEEEEET--TEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEEC
T ss_pred HceeeeEeecCCCeEEEEEEEC--CCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEec
Confidence 5677799999999999999874 7889999985432 3577899999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQ--IIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
+++|+|.+++........+++..+..++.|+++|++|||+. + |+||||||+||+++.++.+||+|||+++.....
T Consensus 116 ~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~ 192 (309)
T 3p86_A 116 LSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAST 192 (309)
T ss_dssp CTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC--------
T ss_pred CCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCCcccccc
Confidence 99999999998765444589999999999999999999999 8 999999999999999999999999999755432
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
........||+.|+|||.+.+..++.++||||+||++|||++|+.||...... ......... ...
T Consensus 193 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~--~~~~~~~~~-----------~~~ 257 (309)
T 3p86_A 193 --FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA--QVVAAVGFK-----------CKR 257 (309)
T ss_dssp -----------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH--HHHHHHHHS-----------CCC
T ss_pred --ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhc-----------CCC
Confidence 12233457899999999999999999999999999999999999999643111 000000000 000
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
.. .+...+..+.+++.+||+.||++|||++++++.|+++.+...
T Consensus 258 ~~----~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~ 301 (309)
T 3p86_A 258 LE----IPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAV 301 (309)
T ss_dssp CC----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC---
T ss_pred CC----CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCC
Confidence 00 011223467899999999999999999999999999877543
No 66
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=7e-39 Score=362.31 Aligned_cols=250 Identities=24% Similarity=0.359 Sum_probs=204.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||++... ...+.+|+.+++.++||||+++++++.+++..|+||||
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 86 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence 3577789999999999999999999999999998432 35688999999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~ 988 (1119)
+++|+|.+++.... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 87 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 160 (323)
T 3tki_A 87 CSGGELFDRIEPDI---GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (323)
T ss_dssp CTTEEGGGGSBTTT---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred CCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCCc
Confidence 99999999997654 489999999999999999999999 999999999999999999999999999987654333
Q ss_pred CCcccccccCCCcccccccCCCCC-CCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccc
Q 001226 989 SSTRSAIVGSLGYIAPENAYSTRL-TEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREI 1067 (1119)
Q Consensus 989 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1119)
........||+.|+|||.+.+..+ +.++||||+||++|||++|+.||............ +..... ..
T Consensus 161 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~---~~~~~~-----~~---- 228 (323)
T 3tki_A 161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSD---WKEKKT-----YL---- 228 (323)
T ss_dssp ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHH---HHTTCT-----TS----
T ss_pred ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHH---Hhcccc-----cC----
Confidence 333445689999999999877665 77899999999999999999999754322221111 111000 00
Q ss_pred cCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1068 SFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1068 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
......+..+.+++.+||+.||++|||++|++++
T Consensus 229 ----~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 229 ----NPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp ----TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ----CccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 0011224467899999999999999999999886
No 67
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.7e-38 Score=350.18 Aligned_cols=259 Identities=25% Similarity=0.366 Sum_probs=205.2
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
+|+..+.||+|+||.||+|++..+++.||+|++... ...+.+|+..++.++||||+++++++.+++..|+|||
T Consensus 12 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 91 (294)
T 4eqm_A 12 RYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVME 91 (294)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEE
T ss_pred cEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEe
Confidence 567779999999999999999999999999987321 1357789999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|+++++|.+++...+ .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 92 ~~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 165 (294)
T 4eqm_A 92 YIEGPTLSEYIESHG---PLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS 165 (294)
T ss_dssp CCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC----
T ss_pred CCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCcccccccc
Confidence 999999999998765 489999999999999999999999 99999999999999999999999999998765422
Q ss_pred CCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREI 1067 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1119)
........||+.|+|||.+.+..++.++||||+|+++|||++|+.||........ ............. ...
T Consensus 166 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~----~~~~~~~~~~~~~----~~~ 236 (294)
T 4eqm_A 166 -LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSI----AIKHIQDSVPNVT----TDV 236 (294)
T ss_dssp ----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHH----HHHHHSSCCCCHH----HHS
T ss_pred -ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH----HHHHhhccCCCcc----hhc
Confidence 2223345799999999999999999999999999999999999999964311100 0000000000000 000
Q ss_pred cCCCchHHHHHHHHHHHHHHccccCCCCCC-CHHHHHHHHHcccccCC
Q 001226 1068 SFWDSDDQLKALRLLELALECTRQVADMRP-SMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1068 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-s~~ell~~L~~~~~~~~ 1114 (1119)
....+..+.+++.+|++.||++|| +++++.+.|+++..+..
T Consensus 237 ------~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~~ 278 (294)
T 4eqm_A 237 ------RKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENR 278 (294)
T ss_dssp ------CTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSSS
T ss_pred ------ccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhcc
Confidence 011245688999999999999999 99999999999876654
No 68
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-38 Score=360.08 Aligned_cols=248 Identities=20% Similarity=0.303 Sum_probs=204.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~ 911 (1119)
+|+..+.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+.+++.++||||+++++++.+.+..++||||+++
T Consensus 6 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g 85 (321)
T 1tki_A 6 KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISG 85 (321)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCC
T ss_pred ceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCC
Confidence 567789999999999999999999999999998643 24577899999999999999999999999999999999999
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC--CCceEEEeccccccccCCCCC
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS--ELEPKIGDFGMSKLISDSHSS 989 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~--~~~vkl~DfGla~~~~~~~~~ 989 (1119)
|+|.+++..... .+++..+..++.|+++|+.|||+. +|+||||||+||+++. ++.+||+|||+++.....
T Consensus 86 ~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~--- 157 (321)
T 1tki_A 86 LDIFERINTSAF--ELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG--- 157 (321)
T ss_dssp CBHHHHHTSSSC--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT---
T ss_pred CCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC---
Confidence 999999976532 489999999999999999999999 9999999999999987 789999999999876442
Q ss_pred CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 990 STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 990 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
.......||+.|+|||.+.+..++.++||||+||++|||++|+.||..... .. .... +.......
T Consensus 158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~---~~~~----------i~~~~~~~ 222 (321)
T 1tki_A 158 DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN--QQ---IIEN----------IMNAEYTF 222 (321)
T ss_dssp CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH--HH---HHHH----------HHHTCCCC
T ss_pred CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH--HH---HHHH----------HHcCCCCC
Confidence 223446789999999999888899999999999999999999999964311 00 0000 00111110
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
........+.++.+++.+|++.||++|||++|++++
T Consensus 223 ~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~h 258 (321)
T 1tki_A 223 DEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQH 258 (321)
T ss_dssp CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 000111234578899999999999999999999985
No 69
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=360.02 Aligned_cols=259 Identities=27% Similarity=0.400 Sum_probs=206.4
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCc---eEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSR---KHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~---~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|.+..++ ..||||+++.. ...+.+|+.+++.++||||+++++++.+++..++|
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 128 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV 128 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence 35667799999999999999987544 45999998643 24578899999999999999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++++|.++++.... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 129 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 203 (325)
T 3kul_A 129 TEYMENGSLDTFLRTHDG--QFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLED 203 (325)
T ss_dssp EECCTTCBHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC-
T ss_pred eeCCCCCcHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCccccccc
Confidence 999999999999976543 489999999999999999999999 999999999999999999999999999987654
Q ss_pred CCC-CCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 986 SHS-SSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 986 ~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
... ........+|+.|+|||.+.+..++.++||||+||++|||++ |+.||...... .... . .. .. .
T Consensus 204 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~--~-~~-~~------~ 271 (325)
T 3kul_A 204 DPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR--DVIS--S-VE-EG------Y 271 (325)
T ss_dssp ---CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH--HHHH--H-HH-TT------C
T ss_pred CccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH--HHHH--H-HH-cC------C
Confidence 322 112233456788999999988889999999999999999998 99998643111 1000 0 00 00 0
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCC
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEG 1115 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~ 1115 (1119)
.. ..+...+..+.+++.+||+.||++|||++++++.|+++.+..+.
T Consensus 272 --~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~ 317 (325)
T 3kul_A 272 --RL----PAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPES 317 (325)
T ss_dssp --CC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC-
T ss_pred --CC----CCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCccc
Confidence 00 01112345788999999999999999999999999999876653
No 70
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=357.41 Aligned_cols=248 Identities=22% Similarity=0.298 Sum_probs=203.4
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 903 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+.+++.++||||+++++++.++...+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 4678889999999999999999999999999988532 245889999999999999999999999999999
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC----ceEEEeccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL----EPKIGDFGM 979 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~----~vkl~DfGl 979 (1119)
+||||+++++|.+++.... .+++..+..++.|++.|+.|||+. +|+||||||+||+++.++ .+||+|||+
T Consensus 91 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~ 164 (326)
T 2y0a_A 91 LILELVAGGELFDFLAEKE---SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGL 164 (326)
T ss_dssp EEEECCCSCBHHHHHTTSS---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEEcCCCCCHHHHHHhcC---CcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECCC
Confidence 9999999999999997654 489999999999999999999999 999999999999999887 799999999
Q ss_pred cccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccc
Q 001226 980 SKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHEC 1059 (1119)
Q Consensus 980 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1119)
++...... ......||+.|+|||.+.+..++.++||||+||++|||++|+.||...... .......
T Consensus 165 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~----~~~~~~~------- 230 (326)
T 2y0a_A 165 AHKIDFGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ----ETLANVS------- 230 (326)
T ss_dssp CEECCTTS---CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH----HHHHHHH-------
T ss_pred CeECCCCC---ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH----HHHHHHH-------
Confidence 98765322 223457999999999999889999999999999999999999999643110 0000000
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1060 ICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..............+..+.+++.+||+.||++|||++|++++
T Consensus 231 ----~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 272 (326)
T 2y0a_A 231 ----AVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272 (326)
T ss_dssp ----HTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred ----hcCCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 000000000011224567899999999999999999999985
No 71
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=4.2e-38 Score=356.85 Aligned_cols=245 Identities=24% Similarity=0.327 Sum_probs=203.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..+.||+|+||.||+|+++.+++.||+|++++. ...+.+|+.+++.++||||+++++++.+.+..|+||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 3567779999999999999999999999999998532 245778999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+++|+|.+++...+ .+++..++.++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 85 E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 158 (337)
T 1o6l_A 85 EYANGGELFFHLSRER---VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD 158 (337)
T ss_dssp ECCTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred eCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhcccC
Confidence 9999999999998654 489999999999999999999999 9999999999999999999999999999854321
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
........||+.|+|||.+.+..++.++||||+||++|||++|+.||..... ........ ...
T Consensus 159 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~i~----------~~~ 221 (337)
T 1o6l_A 159 --GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----ERLFELIL----------MEE 221 (337)
T ss_dssp --TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHH----------HCC
T ss_pred --CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH-----HHHHHHHH----------cCC
Confidence 1233456799999999999999999999999999999999999999964211 00101000 011
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRP-----SMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~ell~~ 1105 (1119)
... +...+..+.+++.+||+.||++|| +++|+++|
T Consensus 222 ~~~----p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h 261 (337)
T 1o6l_A 222 IRF----PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261 (337)
T ss_dssp CCC----CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred CCC----CCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence 110 111234678999999999999999 89999876
No 72
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-38 Score=357.34 Aligned_cols=243 Identities=25% Similarity=0.368 Sum_probs=200.8
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|...+.||+|+||.||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++..++..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 3577779999999999999999999999999998532 245889999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+ +|+|.+++...+ .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 89 E~~-~g~l~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~ 161 (336)
T 3h4j_B 89 EYA-GGELFDYIVEKK---RMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161 (336)
T ss_dssp CCC-CEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS
T ss_pred ECC-CCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccCC
Confidence 999 789999987654 489999999999999999999999 9999999999999999999999999999876543
Q ss_pred CCCCcccccccCCCcccccccCCCCC-CCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRL-TEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
. ......||+.|+|||.+.+..+ ++++||||+||++|||++|+.||........ ... ....
T Consensus 162 ~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~--~~~-------------i~~~ 223 (336)
T 3h4j_B 162 N---FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL--FKK-------------VNSC 223 (336)
T ss_dssp B---TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC--BCC-------------CCSS
T ss_pred c---ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH--HHH-------------HHcC
Confidence 2 2334579999999999988776 6899999999999999999999975321111 000 0000
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.. ..+...+..+.+++.+||+.||++|||++|++++
T Consensus 224 ~~----~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 259 (336)
T 3h4j_B 224 VY----VMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRD 259 (336)
T ss_dssp CC----CCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred CC----CCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence 00 0011123467899999999999999999999875
No 73
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1e-37 Score=352.54 Aligned_cols=244 Identities=23% Similarity=0.334 Sum_probs=200.4
Q ss_pred hCCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCCC
Q 001226 837 TEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPGG 912 (1119)
Q Consensus 837 ~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~g 912 (1119)
...+.||+|+||.||+|.+..+|+.||||+++.. ...+.+|+.+++.++||||+++++++..++..++||||++++
T Consensus 48 ~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~ 127 (321)
T 2c30_A 48 DSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGG 127 (321)
T ss_dssp EEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCSC
T ss_pred hccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCCC
Confidence 3346899999999999999988999999998532 245789999999999999999999999999999999999999
Q ss_pred CHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCCcc
Q 001226 913 TLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSSTR 992 (1119)
Q Consensus 913 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~~ 992 (1119)
+|.+++... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||++....... ...
T Consensus 128 ~L~~~l~~~----~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~--~~~ 198 (321)
T 2c30_A 128 ALTDIVSQV----RLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV--PKR 198 (321)
T ss_dssp BHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS--CCB
T ss_pred CHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCcEEEeeeeeeeecccCc--ccc
Confidence 999998753 389999999999999999999999 99999999999999999999999999998765422 223
Q ss_pred cccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCCCc
Q 001226 993 SAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFWDS 1072 (1119)
Q Consensus 993 ~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1119)
....||+.|+|||.+.+..++.++||||+||++|||++|+.||..... ......... ...+.. .
T Consensus 199 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~----~~~~~~~~~--------~~~~~~----~ 262 (321)
T 2c30_A 199 KSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP----VQAMKRLRD--------SPPPKL----K 262 (321)
T ss_dssp CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHH--------SSCCCC----T
T ss_pred ccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHhc--------CCCCCc----C
Confidence 456799999999999999999999999999999999999999964311 000000000 000000 0
Q ss_pred hHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1073 DDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1073 ~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.....+..+.+++.+||+.||++|||++|++++
T Consensus 263 ~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 263 NSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred ccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 111224467899999999999999999999986
No 74
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=1.5e-37 Score=347.85 Aligned_cols=265 Identities=17% Similarity=0.232 Sum_probs=212.9
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc--ccccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEEEeccCC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR--SETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~--~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e~~~~ 911 (1119)
+|+..+.||+|+||.||+|.+..+++.||||++.. ....+.+|+.+++.+ +|++++++++++.++...++||||+ +
T Consensus 11 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~ 89 (298)
T 1csn_A 11 HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-G 89 (298)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-C
T ss_pred ceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-C
Confidence 46677899999999999999999999999998853 445789999999999 7999999999999999999999999 9
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCc-----eEEEeccccccccCC
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELE-----PKIGDFGMSKLISDS 986 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~-----vkl~DfGla~~~~~~ 986 (1119)
++|.+++...+. .+++..+..++.|+++|++|||+. +|+||||||+||+++.++. +||+|||+++.....
T Consensus 90 ~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~ 164 (298)
T 1csn_A 90 PSLEDLLDLCGR--KFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDP 164 (298)
T ss_dssp CBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCT
T ss_pred CCHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccc
Confidence 999999987643 489999999999999999999999 9999999999999988776 999999999877543
Q ss_pred CCC-----CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccc
Q 001226 987 HSS-----STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECIC 1061 (1119)
Q Consensus 987 ~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1119)
... .......||+.|+|||.+.+..++.++||||+||++|||++|+.||.......... ..........
T Consensus 165 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~-~~~~~~~~~~----- 238 (298)
T 1csn_A 165 VTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQ-KYERIGEKKQ----- 238 (298)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHH-HHHHHHHHHH-----
T ss_pred cccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHH-HHHHHHhhcc-----
Confidence 221 12345679999999999999999999999999999999999999997542211110 0000000000
Q ss_pred cccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1062 FLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
..... ......+..+.+++.+||+.||++||++++|++.|+++.++.+..
T Consensus 239 --~~~~~---~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~~ 288 (298)
T 1csn_A 239 --STPLR---ELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTT 288 (298)
T ss_dssp --HSCHH---HHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred --CccHH---HHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCC
Confidence 00000 000112457889999999999999999999999999998775543
No 75
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=2.9e-38 Score=361.70 Aligned_cols=251 Identities=23% Similarity=0.317 Sum_probs=203.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccc---------ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR---------SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~---------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 904 (1119)
.+|+..+.||+|+||+||+|.++.+++.||||+++. ....+.+|+.+++.++||||+++++++.+++..|+
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 368888999999999999999999999999998842 23568899999999999999999999999999999
Q ss_pred EEeccCCCCHHHhhccCC-CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCc---eEEEecccc
Q 001226 905 VTEYMPGGTLFNVLHQNE-PRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELE---PKIGDFGMS 980 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~---vkl~DfGla 980 (1119)
||||+++++|.+++.... ....+++..+..++.||++|++|||+. +|+||||||+||+++.++. +||+|||++
T Consensus 104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a 180 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGVA 180 (351)
T ss_dssp EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcce
Confidence 999999999988876532 223589999999999999999999999 9999999999999987654 999999999
Q ss_pred ccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccc
Q 001226 981 KLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECI 1060 (1119)
Q Consensus 981 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1119)
+...... .......||+.|+|||.+.+..++.++||||+||++|||++|+.||.... .. .+..
T Consensus 181 ~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~---~~--~~~~---------- 243 (351)
T 3c0i_A 181 IQLGESG--LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK---ER--LFEG---------- 243 (351)
T ss_dssp EECCTTS--CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH---HH--HHHH----------
T ss_pred eEecCCC--eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH---HH--HHHH----------
Confidence 8765422 22334579999999999999899999999999999999999999996421 10 0000
Q ss_pred ccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1061 CFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
................+..+.+++.+||+.||++|||++|+++|
T Consensus 244 -i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 287 (351)
T 3c0i_A 244 -IIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNH 287 (351)
T ss_dssp -HHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred -HHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 00000000000011224578899999999999999999999874
No 76
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=3.2e-38 Score=347.54 Aligned_cols=256 Identities=25% Similarity=0.435 Sum_probs=206.8
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMP 910 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 910 (1119)
.+|+..+.||+|+||.||+|.++. +..||+|+++.. ..++.+|+.+++.++||||+++++++.+++..++||||++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 86 (268)
T 3sxs_A 8 EEITLLKELGSGQFGVVKLGKWKG-QYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYIS 86 (268)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETT-TEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred hheeeeeeeccCCCceEEEEEecC-ceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccC
Confidence 356777899999999999998875 678999998643 3568899999999999999999999999999999999999
Q ss_pred CCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCC
Q 001226 911 GGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSS 990 (1119)
Q Consensus 911 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~ 990 (1119)
+++|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||.+....... ..
T Consensus 87 ~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~ 160 (268)
T 3sxs_A 87 NGCLLNYLRSHGK--GLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ-YV 160 (268)
T ss_dssp TCBHHHHHHHHGG--GCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC-EE
T ss_pred CCcHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhh-hh
Confidence 9999999987542 489999999999999999999999 99999999999999999999999999998765432 12
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||........ ..... ... ...
T Consensus 161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~----~~~~~--~~~------~~~--- 225 (268)
T 3sxs_A 161 SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEV----VLKVS--QGH------RLY--- 225 (268)
T ss_dssp ECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHH----HHHHH--TTC------CCC---
T ss_pred cccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHH----HHHHH--cCC------CCC---
Confidence 2233456778999999988889999999999999999998 9999864311100 00000 000 000
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
.+...+..+.+++.+||+.||++|||++|++++|++++++..
T Consensus 226 ---~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~~k 267 (268)
T 3sxs_A 226 ---RPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREKDK 267 (268)
T ss_dssp ---CCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC---
T ss_pred ---CCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhccC
Confidence 001123467899999999999999999999999999988754
No 77
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=7.7e-38 Score=367.41 Aligned_cols=249 Identities=21% Similarity=0.304 Sum_probs=202.1
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
.+|+..+.||+|+||+||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++.+++..|+|||
T Consensus 11 ~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E 90 (444)
T 3soa_A 11 EEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFD 90 (444)
T ss_dssp HHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEEC
T ss_pred CCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEE
Confidence 4788889999999999999999999999999998543 2457899999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC---CCCceEEEecccccccc
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD---SELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~---~~~~vkl~DfGla~~~~ 984 (1119)
|+++|+|.+++.... .+++..+..++.||+.|+.|||+. +|+||||||+||+++ .++.+||+|||+++...
T Consensus 91 ~~~gg~L~~~i~~~~---~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~ 164 (444)
T 3soa_A 91 LVTGGELFEDIVARE---YYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVE 164 (444)
T ss_dssp CCBCCBHHHHHHHCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCC
T ss_pred eCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeEEec
Confidence 999999999998765 489999999999999999999999 999999999999998 46789999999998665
Q ss_pred CCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... .. .+.... .
T Consensus 165 ~~~--~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~--~~--~~~~i~-----------~ 227 (444)
T 3soa_A 165 GEQ--QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ--HR--LYQQIK-----------A 227 (444)
T ss_dssp TTC--CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HH--HHHHHH-----------H
T ss_pred CCC--ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH--HH--HHHHHH-----------h
Confidence 422 223346799999999999998999999999999999999999999964211 00 000000 0
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.............+..+.+++.+||+.||++|||++|++++
T Consensus 228 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h 268 (444)
T 3soa_A 228 GAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKH 268 (444)
T ss_dssp TCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred CCCCCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 00000000011224567899999999999999999999875
No 78
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=5.8e-38 Score=360.17 Aligned_cols=248 Identities=22% Similarity=0.337 Sum_probs=202.9
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
.+|+..+.||+|+||.||+|.++.+++.||+|+++... ..+.+|+.+++.++||||+++++++.+++..|+|||
T Consensus 29 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e 108 (362)
T 2bdw_A 29 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD 108 (362)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence 47888899999999999999999999999999985432 357789999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC---ceEEEecccccccc
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL---EPKIGDFGMSKLIS 984 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~---~vkl~DfGla~~~~ 984 (1119)
|+++|+|.+++.... .+++..+..++.||++|++|||+. +|+||||||+||+++.++ .+||+|||++....
T Consensus 109 ~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~ 182 (362)
T 2bdw_A 109 LVTGGELFEDIVARE---FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 182 (362)
T ss_dssp CCCSCBHHHHHTTCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCT
T ss_pred cCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceEec
Confidence 999999999987654 489999999999999999999999 999999999999998654 59999999998765
Q ss_pred CCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
... ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... .. .+.. ...
T Consensus 183 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~--~~--~~~~-i~~---------- 244 (362)
T 2bdw_A 183 DSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HR--LYAQ-IKA---------- 244 (362)
T ss_dssp TCC---SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HH--HHHH-HHH----------
T ss_pred CCc---ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HH--HHHH-HHh----------
Confidence 422 22345799999999999998999999999999999999999999964311 00 0000 000
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.............+..+.+++.+||+.||++||+++|++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 245 GAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp TCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred CCCCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 00000001111234567899999999999999999999876
No 79
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=1.3e-37 Score=353.59 Aligned_cols=261 Identities=16% Similarity=0.193 Sum_probs=210.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc--ccccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEEEeccCC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR--SETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~--~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e~~~~ 911 (1119)
+|+..+.||+|+||.||+|.+..+++.||||++.. ....+.+|+.+++.+ +||||+++++++.+++..++||||+ +
T Consensus 10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~ 88 (330)
T 2izr_A 10 NFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-G 88 (330)
T ss_dssp TEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-C
T ss_pred CeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-C
Confidence 46667899999999999999999999999998853 345789999999999 8999999999999999999999999 9
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCc-----eEEEeccccccccCC
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELE-----PKIGDFGMSKLISDS 986 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~-----vkl~DfGla~~~~~~ 986 (1119)
++|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++. +||+|||+++.....
T Consensus 89 ~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~ 163 (330)
T 2izr_A 89 PSLEDLFDLCDR--TFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDP 163 (330)
T ss_dssp CBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCT
T ss_pred CCHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecC
Confidence 999999987532 589999999999999999999999 9999999999999999887 999999999876543
Q ss_pred CCCC-----cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccc
Q 001226 987 HSSS-----TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECIC 1061 (1119)
Q Consensus 987 ~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1119)
.... ......||+.|+|||.+.+..++.++||||+||++|||++|+.||......... .......
T Consensus 164 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~-~~~~~i~--------- 233 (330)
T 2izr_A 164 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLK-ERYQKIG--------- 233 (330)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHH-HHHHHHH---------
T ss_pred CCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHH-HHHHHHH---------
Confidence 2211 234568999999999999999999999999999999999999999754221110 0000000
Q ss_pred cccccccCCCch-HHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1062 FLDREISFWDSD-DQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1062 ~~~~~~~~~~~~-~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
.......... ....+ .+.+++.+||+.||++||++++|++.|+++.++.+
T Consensus 234 --~~~~~~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~~ 284 (330)
T 2izr_A 234 --DTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKG 284 (330)
T ss_dssp --HHHHHSCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred --hhhccCCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 0000000000 00113 78899999999999999999999999998876543
No 80
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.9e-38 Score=348.01 Aligned_cols=254 Identities=22% Similarity=0.387 Sum_probs=207.1
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMP 910 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 910 (1119)
.+|+..+.||+|+||.||+|.+.. ++.||+|++... ..++.+|+.++++++||||+++++++.+++..++||||++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 88 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLN-KDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 88 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETT-TEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred hhceeeheecCCCccEEEEEEecC-CCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence 356777899999999999999875 778999998643 3568899999999999999999999999999999999999
Q ss_pred CCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCC
Q 001226 911 GGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSS 990 (1119)
Q Consensus 911 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~ 990 (1119)
+++|.+++..... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++...... ..
T Consensus 89 ~~~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~ 162 (269)
T 4hcu_A 89 HGCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YT 162 (269)
T ss_dssp TCBHHHHHHTTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-HH
T ss_pred CCcHHHHHHhcCc--ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccccc-cc
Confidence 9999999976543 589999999999999999999999 99999999999999999999999999998664321 11
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... . ...... .. ....
T Consensus 163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~--~---~~~~~~-~~------~~~~--- 227 (269)
T 4hcu_A 163 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--E---VVEDIS-TG------FRLY--- 227 (269)
T ss_dssp STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--H---HHHHHH-TT------CCCC---
T ss_pred cccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH--H---HHHHHh-cC------ccCC---
Confidence 2233456788999999988889999999999999999999 99998643111 0 000000 00 0000
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
.+...+..+.+++.+||+.||++|||++|++++|+++.++
T Consensus 228 ---~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 228 ---KPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp ---CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ---CCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 0111245678999999999999999999999999998765
No 81
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=2.8e-38 Score=361.52 Aligned_cols=262 Identities=26% Similarity=0.405 Sum_probs=207.9
Q ss_pred HhhCCceeeecCCccEEEEEeC-----CCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSN-----NSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~-----~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 904 (1119)
+|+..+.||+|+||.||+|.+. .+++.||||+++.. ...+.+|+.+++.++||||+++++++.+++..++
T Consensus 48 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 127 (343)
T 1luf_A 48 NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCL 127 (343)
T ss_dssp GCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceEE
Confidence 5667789999999999999987 34589999998643 2457889999999999999999999999999999
Q ss_pred EEeccCCCCHHHhhccCCC---------------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCC
Q 001226 905 VTEYMPGGTLFNVLHQNEP---------------------RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDN 963 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~N 963 (1119)
||||+++|+|.+++..... ...+++.+++.++.||++|+.|||+. +|+||||||+|
T Consensus 128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~N 204 (343)
T 1luf_A 128 LFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRN 204 (343)
T ss_dssp EEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGG
T ss_pred EEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcce
Confidence 9999999999999987532 13589999999999999999999999 99999999999
Q ss_pred eEeCCCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCC
Q 001226 964 ILLDSELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGED 1042 (1119)
Q Consensus 964 ill~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~ 1042 (1119)
|+++.++.+||+|||+++...............+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||......
T Consensus 205 Il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~- 283 (343)
T 1luf_A 205 CLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHE- 283 (343)
T ss_dssp EEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-
T ss_pred EEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChH-
Confidence 9999999999999999987654333333445578899999999888889999999999999999999 99998643110
Q ss_pred CceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCCC
Q 001226 1043 TDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGGM 1117 (1119)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~~ 1117 (1119)
. ...... +..... .+...+..+.+++.+||+.||++|||+++++++|+++.++.+...
T Consensus 284 -~---~~~~~~----------~~~~~~---~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~~~~ 341 (343)
T 1luf_A 284 -E---VIYYVR----------DGNILA---CPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAEGTV 341 (343)
T ss_dssp -H---HHHHHH----------TTCCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC------
T ss_pred -H---HHHHHh----------CCCcCC---CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhhhhc
Confidence 0 000000 000000 011223468899999999999999999999999999999887653
No 82
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=2.3e-38 Score=364.61 Aligned_cols=259 Identities=25% Similarity=0.386 Sum_probs=207.6
Q ss_pred HHhhCCceeeecCCccEEEEE-----eCCCceEEEEEeccccc-----ccHHHHHHHHhhc-CCCCEEEEeeeeecCC-c
Q 001226 834 IRATEGRIIGKGKHGTVYRTL-----SNNSRKHWAVKKLNRSE-----TNFDVEIRTLSLV-RHRNILRIVGSCTKDE-H 901 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~-----~~~~~~~vavK~~~~~~-----~~~~~E~~~l~~l-~h~niv~l~~~~~~~~-~ 901 (1119)
.+|...+.||+|+||.||+|+ ...+++.||||+++... ..+.+|+++++.+ +||||+++++++.+.+ .
T Consensus 22 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~ 101 (359)
T 3vhe_A 22 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP 101 (359)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSC
T ss_pred cceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCc
Confidence 367778999999999999998 55667999999986532 3478899999999 7999999999988754 4
Q ss_pred eEEEEeccCCCCHHHhhccCCC----------------------------------------------------------
Q 001226 902 GFIVTEYMPGGTLFNVLHQNEP---------------------------------------------------------- 923 (1119)
Q Consensus 902 ~~lV~e~~~~gsL~~~l~~~~~---------------------------------------------------------- 923 (1119)
.++||||+++|+|.++++....
T Consensus 102 ~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (359)
T 3vhe_A 102 LMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEA 181 (359)
T ss_dssp CEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------------------
T ss_pred eEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhccc
Confidence 8999999999999999986542
Q ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCCcccccccC
Q 001226 924 -----RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSSTRSAIVGS 998 (1119)
Q Consensus 924 -----~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt 998 (1119)
...+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++...............+|
T Consensus 182 ~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t 258 (359)
T 3vhe_A 182 PEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 258 (359)
T ss_dssp --CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEEC
T ss_pred ccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCC
Confidence 11288999999999999999999999 9999999999999999999999999999876554433444556789
Q ss_pred CCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccCCCchHHHH
Q 001226 999 LGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFWDSDDQLK 1077 (1119)
Q Consensus 999 ~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1119)
+.|+|||.+.+..++.++||||+||++|||++ |+.||........ . ........ .... +...
T Consensus 259 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~--~~~~~~~~--------~~~~------~~~~ 321 (359)
T 3vhe_A 259 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-F--CRRLKEGT--------RMRA------PDYT 321 (359)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-H--HHHHHHTC--------CCCC------CTTC
T ss_pred ceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH-H--HHHHHcCC--------CCCC------CCCC
Confidence 99999999988899999999999999999998 9999865321111 0 00000000 0000 0112
Q ss_pred HHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1078 ALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1078 ~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
+..+.+++.+||+.||++|||++|++++|+++.+.
T Consensus 322 ~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 322 TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999998764
No 83
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=6.1e-39 Score=358.62 Aligned_cols=273 Identities=25% Similarity=0.380 Sum_probs=203.3
Q ss_pred HHhhCCceeeecCCccEEEEE----eCCCceEEEEEeccccc----ccHHHHHHHHhhcCCCCEEEEeeeeec--CCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTL----SNNSRKHWAVKKLNRSE----TNFDVEIRTLSLVRHRNILRIVGSCTK--DEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~----~~~~~~~vavK~~~~~~----~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~ 903 (1119)
.+|+..+.||+|+||+||+|+ +..+++.||||++.... ..+.+|+.+++.++||||+++++++.. ....+
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 89 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 89 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence 356777999999999999998 56678999999986433 457889999999999999999999855 35689
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+||||+++|+|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 90 lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~ 164 (295)
T 3ugc_A 90 LIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVL 164 (295)
T ss_dssp EEEECCTTCBHHHHHHHCGG--GCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC--
T ss_pred EEEEeCCCCCHHHHHHhccc--ccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccccc
Confidence 99999999999999987643 489999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCC-CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 984 SDSHSS-STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 984 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
...... .......++..|+|||.+.+..++.++||||+|+++|||++|..|+.....+.....................
T Consensus 165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (295)
T 3ugc_A 165 PQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIEL 244 (295)
T ss_dssp -----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHH
T ss_pred cCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHH
Confidence 543221 2233445778899999998889999999999999999999999998642110000000000000000000000
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
+...... ..+...+..+.+++.+||+.||++|||++|+++.|+++.++-
T Consensus 245 ~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 245 LKNNGRL--PRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp HHTTCCC--CCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HhccCcC--CCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 0000000 011223457889999999999999999999999999998764
No 84
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=5.5e-38 Score=361.95 Aligned_cols=256 Identities=27% Similarity=0.423 Sum_probs=195.6
Q ss_pred HHhhCCceeeecCCccEEEEEeC---CCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSN---NSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~---~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|++. .++..||||+++.. ...+.+|+.++++++||||+++++++.+++..++|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 124 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV 124 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence 46788899999999999999876 45778999998643 24578899999999999999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++|+|.++++.... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 125 ~e~~~~~sL~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 199 (373)
T 2qol_A 125 TEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLED 199 (373)
T ss_dssp EECCTTCBHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EeCCCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCcccccccc
Confidence 999999999999986543 489999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCC-CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 986 SHSS-STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 986 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
.... .......+|+.|+|||.+.+..++.++|||||||++|||++ |+.||...... ... .. +
T Consensus 200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~--~~~---~~-----------i 263 (373)
T 2qol_A 200 DPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ--DVI---KA-----------V 263 (373)
T ss_dssp --------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH--HHH---HH-----------H
T ss_pred CCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHH---HH-----------H
Confidence 3211 12222345778999999988899999999999999999997 99998643111 100 00 0
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
....... .+...+..+.+++.+||+.||++||++++|++.|+++.+.
T Consensus 264 ~~~~~~~--~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 264 DEGYRLP--PPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp HTTEECC--CCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HcCCCCC--CCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 0000000 0112245688999999999999999999999999998654
No 85
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=1e-37 Score=349.85 Aligned_cols=260 Identities=27% Similarity=0.356 Sum_probs=199.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-cccHHHHHHHHhh--cCCCCEEEEeeeeec----CCceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-ETNFDVEIRTLSL--VRHRNILRIVGSCTK----DEHGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~E~~~l~~--l~h~niv~l~~~~~~----~~~~~lV~e 907 (1119)
+|+..+.||+|+||+||+|.+ +++.||||++... ...+..|.+++.. ++||||+++++++.+ ....++|||
T Consensus 9 ~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e 86 (301)
T 3q4u_A 9 DITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITH 86 (301)
T ss_dssp GCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEEC
T ss_pred cEEEEEeeccCCCcEEEEEEE--CCEEEEEEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehh
Confidence 567778999999999999987 4789999998654 3445566666665 789999999998654 345799999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEecCCCCCCeEeCCCCceEEEeccc
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLH--------YDCVPQIIHRDIKSDNILLDSELEPKIGDFGM 979 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGl 979 (1119)
|+++|+|.++++.. .+++..+..++.|++.|++||| +. +|+||||||+||+++.++.+||+|||+
T Consensus 87 ~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~ 159 (301)
T 3q4u_A 87 YHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIADLGL 159 (301)
T ss_dssp CCTTCBHHHHHTTC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred hccCCCHHHHHhhc----ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEeeCCC
Confidence 99999999999643 4899999999999999999999 66 999999999999999999999999999
Q ss_pred cccccCCCCCC--cccccccCCCcccccccCCC------CCCCcchHHHHHHHHHHHHhC----------CCCCCCCCCC
Q 001226 980 SKLISDSHSSS--TRSAIVGSLGYIAPENAYST------RLTEKSDVYSYGVILFELLFR----------KMPVDPSFGE 1041 (1119)
Q Consensus 980 a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~sDvwslG~vl~elltg----------~~p~~~~~~~ 1041 (1119)
++......... ......||+.|+|||.+.+. .++.++||||+||++|||++| +.||......
T Consensus 160 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~ 239 (301)
T 3q4u_A 160 AVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPN 239 (301)
T ss_dssp CEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCS
T ss_pred eeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCC
Confidence 98665432211 12345799999999988776 445789999999999999999 7777654333
Q ss_pred CCceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccc
Q 001226 1042 DTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLN 1110 (1119)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~ 1110 (1119)
.............. ...+.... .......+..+.+++.+||+.||++|||++|+++.|+++.
T Consensus 240 ~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~ 301 (301)
T 3q4u_A 240 DPSFEDMRKVVCVD------QQRPNIPN-RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKID 301 (301)
T ss_dssp SCCHHHHHHHHTTS------CCCCCCCG-GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHC
T ss_pred CcchhhhhHHHhcc------CCCCCCCh-hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhccC
Confidence 22221111111000 00011110 0112345678899999999999999999999999999863
No 86
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=1.8e-37 Score=357.83 Aligned_cols=255 Identities=23% Similarity=0.319 Sum_probs=202.3
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEE
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 904 (1119)
+.+|+..++||+|+||.||+|+++.+++.||+|++++. ...+.+|..+++++ +||||+++++++.+++..|+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 34677889999999999999999999999999998542 23477899999877 89999999999999999999
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
||||+++|+|.+++...+ .+++..++.++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 131 V~E~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~ 204 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL 204 (396)
T ss_dssp EEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEcCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeecc
Confidence 999999999999998754 489999999999999999999999 99999999999999999999999999998532
Q ss_pred CCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
. ........+||+.|+|||++.+..++.++||||+||++|||++|+.||......+.......... ......
T Consensus 205 ~--~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~------~~~i~~ 276 (396)
T 4dc2_A 205 R--PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYL------FQVILE 276 (396)
T ss_dssp C--TTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHH------HHHHHH
T ss_pred c--CCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHH------HHHHhc
Confidence 2 12234456899999999999999999999999999999999999999975322111100000000 000011
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCH------HHHHHH
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSM------REVVGF 1105 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~------~ell~~ 1105 (1119)
..... +...+.++.+++.+||+.||++||++ +|+++|
T Consensus 277 ~~~~~----p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~H 319 (396)
T 4dc2_A 277 KQIRI----PRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 319 (396)
T ss_dssp CCCCC----CTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHS
T ss_pred cccCC----CCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcC
Confidence 11111 11224467899999999999999985 677654
No 87
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=6.4e-38 Score=353.75 Aligned_cols=258 Identities=27% Similarity=0.408 Sum_probs=209.7
Q ss_pred HHhhCCceeeecCCccEEEEEeC-----CCceEEEEEeccccc-----ccHHHHHHHHhhcCCCCEEEEeeeeecCCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSN-----NSRKHWAVKKLNRSE-----TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~-----~~~~~vavK~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 903 (1119)
.+|...+.||+|+||.||+|.+. .+++.||||+++... ..+.+|+.+++.++||||+++++++.+++..+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 102 (314)
T 2ivs_A 23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLL 102 (314)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceE
Confidence 46777899999999999999873 456899999986432 45778999999999999999999999999999
Q ss_pred EEEeccCCCCHHHhhccCCC---------------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCC
Q 001226 904 IVTEYMPGGTLFNVLHQNEP---------------------RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSD 962 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~ 962 (1119)
+||||+++++|.+++..... ...+++..+..++.|+++|++|||+. +|+||||||+
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dikp~ 179 (314)
T 2ivs_A 103 LIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAAR 179 (314)
T ss_dssp EEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGG
T ss_pred EEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccchh
Confidence 99999999999999987542 12488999999999999999999999 9999999999
Q ss_pred CeEeCCCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCC
Q 001226 963 NILLDSELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGE 1041 (1119)
Q Consensus 963 Nill~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~ 1041 (1119)
||+++.++.+||+|||+++...............+|+.|+|||.+.+..++.++||||+||++|||++ |+.||......
T Consensus 180 NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~ 259 (314)
T 2ivs_A 180 NILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPE 259 (314)
T ss_dssp GEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG
T ss_pred eEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 99999999999999999987655433333444567889999999988889999999999999999999 99998653211
Q ss_pred CCceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1042 DTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
.... ... ... ... .+...+..+.+++.+||+.||++||+++|++++|+++.++
T Consensus 260 --~~~~--~~~--~~~------~~~------~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 260 --RLFN--LLK--TGH------RME------RPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp --GHHH--HHH--TTC------CCC------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred --HHHH--Hhh--cCC------cCC------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 1100 000 000 000 0112245688999999999999999999999999998765
No 88
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=9.3e-38 Score=355.39 Aligned_cols=250 Identities=20% Similarity=0.314 Sum_probs=200.4
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEeccc-----ccccHHHHHHHHhhcCCCCEEEEeeeeecCC-------
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR-----SETNFDVEIRTLSLVRHRNILRIVGSCTKDE------- 900 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------- 900 (1119)
+.+|+..+.||+|+||.||+|+++.+++.||||+++. ..+.+.+|+++++.++||||+++++++.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 4578888999999999999999999999999999853 2245789999999999999999999886543
Q ss_pred --------------------------------------------------ceEEEEeccCCCCHHHhhccCCCCCCCCHH
Q 001226 901 --------------------------------------------------HGFIVTEYMPGGTLFNVLHQNEPRLVLDWN 930 (1119)
Q Consensus 901 --------------------------------------------------~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~ 930 (1119)
..++||||+++++|.+++.........++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence 279999999999999999987665567788
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCC----------CcccccccCCC
Q 001226 931 TRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSS----------STRSAIVGSLG 1000 (1119)
Q Consensus 931 ~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~----------~~~~~~~gt~~ 1000 (1119)
.+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++........ .......||+.
T Consensus 165 ~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 241 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL 241 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred HHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence 8999999999999999999 9999999999999999999999999999877543211 22344579999
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCCCchHHHHHHH
Q 001226 1001 YIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALR 1080 (1119)
Q Consensus 1001 y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1119)
|+|||.+.+..++.++||||+||++|||++|..|+... ..... ..... ............
T Consensus 242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~-------~~~~~----------~~~~~---~~~~~~~~~~~~ 301 (332)
T 3qd2_B 242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER-------VRIIT----------DVRNL---KFPLLFTQKYPQ 301 (332)
T ss_dssp GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH-------HHHHH----------HHHTT---CCCHHHHHHCHH
T ss_pred ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH-------HHHHH----------Hhhcc---CCCcccccCChh
Confidence 99999999999999999999999999999987664210 00000 00000 111222344556
Q ss_pred HHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1081 LLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1081 l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
+.+++.+||+.||++|||++|++++
T Consensus 302 ~~~li~~~l~~~p~~Rps~~~~l~~ 326 (332)
T 3qd2_B 302 EHMMVQDMLSPSPTERPEATDIIEN 326 (332)
T ss_dssp HHHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred HHHHHHHHccCCCCcCCCHHHHhhc
Confidence 7899999999999999999999975
No 89
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=365.65 Aligned_cols=259 Identities=27% Similarity=0.385 Sum_probs=207.2
Q ss_pred HHhhCCceeeecCCccEEEEEe-----CCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLS-----NNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 903 (1119)
.+|+..+.||+|+||.||+|.. ..+++.||||+++.. ...+.+|+.+++.++||||+++++++.++...+
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 150 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF 150 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE
Confidence 3567779999999999999994 446788999998542 235778999999999999999999999999999
Q ss_pred EEEeccCCCCHHHhhccCCC----CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC---ceEEEe
Q 001226 904 IVTEYMPGGTLFNVLHQNEP----RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL---EPKIGD 976 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~---~vkl~D 976 (1119)
+||||+++|+|.+++..... ...+++..++.++.|+++|++|||+. +|+||||||+||+++.++ .+||+|
T Consensus 151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~D 227 (367)
T 3l9p_A 151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGD 227 (367)
T ss_dssp EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEECC
Confidence 99999999999999986542 23589999999999999999999999 999999999999999655 599999
Q ss_pred ccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcc
Q 001226 977 FGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 977 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
||+++...............+|+.|+|||.+.+..++.++||||+||++|||++ |+.||..... .... ......
T Consensus 228 FG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~--~~~~---~~i~~~ 302 (367)
T 3l9p_A 228 FGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEVL---EFVTSG 302 (367)
T ss_dssp CHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHH---HHHHTT
T ss_pred CccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHH---HHHHcC
Confidence 999986654333344455678999999999988899999999999999999998 9999864311 1100 000000
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1056 NHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
. .. ..+...+..+.+++.+||+.||++|||+++|+++++.+.+..
T Consensus 303 -~--------~~----~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~ 347 (367)
T 3l9p_A 303 -G--------RM----DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 347 (367)
T ss_dssp -C--------CC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred -C--------CC----CCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence 0 00 001122346789999999999999999999999999887643
No 90
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=8.4e-38 Score=351.82 Aligned_cols=242 Identities=27% Similarity=0.422 Sum_probs=202.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..+.||+|+||.||+|+++.+++.||+|++++. ...+.+|+.+++.++||||+++++++.+.+..|+||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 4577789999999999999999999999999998532 345678999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+++|+|.+++.... .+++..+..++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 86 e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~- 158 (318)
T 1fot_A 86 DYIEGGELFSLLRKSQ---RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPD- 158 (318)
T ss_dssp CCCCSCBHHHHHHHTS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSS-
T ss_pred eCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCC-
Confidence 9999999999998754 489999999999999999999999 999999999999999999999999999986543
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
......||+.|+|||.+.+..++.++||||+||++|||++|+.||..... ...+. . ++...
T Consensus 159 ----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~~~-~----------i~~~~ 219 (318)
T 1fot_A 159 ----VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT----MKTYE-K----------ILNAE 219 (318)
T ss_dssp ----CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHH-H----------HHHCC
T ss_pred ----ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH----HHHHH-H----------HHhCC
Confidence 22345799999999999999999999999999999999999999964311 00000 0 01111
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRP-----SMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~ell~~ 1105 (1119)
... +...+.++.+++.+|++.||++|| +++|+++|
T Consensus 220 ~~~----p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h 259 (318)
T 1fot_A 220 LRF----PPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH 259 (318)
T ss_dssp CCC----CTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred CCC----CCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence 111 011234678999999999999999 89999865
No 91
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.9e-38 Score=364.83 Aligned_cols=272 Identities=18% Similarity=0.258 Sum_probs=213.8
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCC--ceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDE--HGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lV~e 907 (1119)
+|+..++||+|+||.||+|.+..+++.||||+++.. ...+.+|+++++.++||||+++++++.+.. ..++|||
T Consensus 10 ~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e 89 (396)
T 4eut_A 10 LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIME 89 (396)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEC
T ss_pred ceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEe
Confidence 466778999999999999999999999999998642 245678999999999999999999988655 6799999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe----CCCCceEEEeccccccc
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL----DSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill----~~~~~vkl~DfGla~~~ 983 (1119)
|+++|+|.+++........+++..++.++.|++.|++|||+. +|+||||||+||++ +.++.+||+|||+++..
T Consensus 90 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~ 166 (396)
T 4eut_A 90 FCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL 166 (396)
T ss_dssp CCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEEC
T ss_pred cCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCceEc
Confidence 999999999998765544599999999999999999999999 99999999999999 77888999999999876
Q ss_pred cCCCCCCcccccccCCCcccccccCC--------CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcc
Q 001226 984 SDSHSSSTRSAIVGSLGYIAPENAYS--------TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 984 ~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
.... ......||+.|+|||.+.+ ..++.++||||+||++|||++|+.||....................
T Consensus 167 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~ 243 (396)
T 4eut_A 167 EDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGK 243 (396)
T ss_dssp CCGG---GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSC
T ss_pred cCCC---ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCC
Confidence 5422 2234578999999997754 4677899999999999999999999976543332222111111111
Q ss_pred cccccc----c------ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1056 NHECIC----F------LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1056 ~~~~~~----~------~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
...... . ....+.............+.+++.+||+.||++||+++|+++.++++.++
T Consensus 244 p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 244 PSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp CTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred CcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 100000 0 01112222223356677889999999999999999999999999887654
No 92
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=9.4e-38 Score=359.11 Aligned_cols=246 Identities=26% Similarity=0.328 Sum_probs=201.3
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++.+.+..|+||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 4677789999999999999999999999999998532 245778999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+++|+|.+++.... .+++..+..++.|++.|+.|||+. ||+||||||+||+++.++.+||+|||+++.....
T Consensus 95 e~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 168 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQNV---HFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE 168 (384)
T ss_dssp CCCTTEEHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCC
Confidence 9999999999998754 489999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCCCcccccccCCCcccccccCC---CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYS---TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
.......||+.|+|||++.. ..++.++||||+||++|||++|+.||......... .........
T Consensus 169 ---~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~--~~~~~~~~~-------- 235 (384)
T 4fr4_A 169 ---TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSK--EIVHTFETT-------- 235 (384)
T ss_dssp ---CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHH--HHHHHHHHC--------
T ss_pred ---CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHH--HHHHHHhhc--------
Confidence 23345679999999998864 45899999999999999999999999753222111 110000000
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCC-HHHHHH
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPS-MREVVG 1104 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-~~ell~ 1104 (1119)
... .+...+..+.+++.+||+.||++||+ ++++.+
T Consensus 236 --~~~----~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 236 --VVT----YPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp --CCC----CCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred --ccC----CCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 000 01112356789999999999999998 777765
No 93
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=5e-38 Score=356.42 Aligned_cols=255 Identities=24% Similarity=0.403 Sum_probs=200.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceE----EEEEeccc-----ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKH----WAVKKLNR-----SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~----vavK~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 904 (1119)
.+|+..++||+|+||+||+|.+..+++. ||+|.++. ....+.+|+.+++.++||||+++++++.++. .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~ 93 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence 3567779999999999999998776654 58887743 2346888999999999999999999998754 789
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
|+||+++|+|.+++..... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 94 v~e~~~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 168 (327)
T 3poz_A 94 ITQLMPFGCLLDYVREHKD--NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEECCTTCBHHHHHHHSTT--SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHT
T ss_pred EEEecCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEcc
Confidence 9999999999999987643 489999999999999999999999 99999999999999999999999999998776
Q ss_pred CCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
............+|+.|+|||.+.+..++.++||||+||++|||++ |+.||...... ......
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~-------------- 232 (327)
T 3poz_A 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSIL-------------- 232 (327)
T ss_dssp TTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHH--------------
T ss_pred CCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHH--HHHHHH--------------
Confidence 5444334444567889999999999999999999999999999999 99999753211 111000
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
...... ..+...+..+.+++.+||+.+|++||+++|++++|+++...
T Consensus 233 ~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 233 EKGERL--PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp HTTCCC--CCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred HcCCCC--CCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 000000 00112234678999999999999999999999999987653
No 94
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=4.1e-38 Score=365.43 Aligned_cols=248 Identities=24% Similarity=0.337 Sum_probs=201.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc-------ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR-------SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~-------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
+|+..++||+|+||+||+|+++.+++.||+|++++ ....+.+|+.+++.++||||+++++++.+++..|+|||
T Consensus 70 ~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E 149 (410)
T 3v8s_A 70 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVME 149 (410)
T ss_dssp GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence 56667899999999999999999999999999853 23458899999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|++||+|.++++.. .+++..++.++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 150 ~~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~ 222 (410)
T 3v8s_A 150 YMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEG 222 (410)
T ss_dssp CCTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS
T ss_pred CCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccceeEeeccCC
Confidence 99999999999764 388999999999999999999999 99999999999999999999999999998765422
Q ss_pred CCCcccccccCCCcccccccCCCC----CCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAYSTR----LTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~~~~----~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
.......+||+.|+|||++.+.. ++.++||||+||++|||++|+.||..... ...+.. ++
T Consensus 223 -~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~----~~~~~~-----------i~ 286 (410)
T 3v8s_A 223 -MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL----VGTYSK-----------IM 286 (410)
T ss_dssp -EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHH-----------HH
T ss_pred -cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCCh----hhHHHH-----------HH
Confidence 11233567999999999887654 78999999999999999999999974311 000000 00
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCC--CCCHHHHHHH
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADM--RPSMREVVGF 1105 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPs~~ell~~ 1105 (1119)
..............+..+.+++.+|++.+|.+ ||+++||++|
T Consensus 287 ~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 287 NHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp THHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred hccccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 00000000001112356789999999999998 9999999987
No 95
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1.3e-37 Score=352.90 Aligned_cols=253 Identities=22% Similarity=0.369 Sum_probs=201.2
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceE----EEEEeccc-----ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKH----WAVKKLNR-----SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~----vavK~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
+|+..+.||+|+||.||+|.+..+++. ||+|++.. ....+.+|+.+++.++||||+++++++. ++..++|
T Consensus 14 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v 92 (325)
T 3kex_A 14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQLV 92 (325)
T ss_dssp TEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEEE
T ss_pred HceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEEE
Confidence 566678999999999999998877765 77777632 2245778999999999999999999986 5678999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++|+|.+++..... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 93 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 167 (325)
T 3kex_A 93 TQYLPLGSLLDHVRQHRG--ALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLPP 167 (325)
T ss_dssp EECCTTCBSHHHHHSSGG--GSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSCC
T ss_pred EEeCCCCCHHHHHHHccc--cCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccCc
Confidence 999999999999986532 488889999999999999999999 999999999999999999999999999998765
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
...........+|+.|+|||.+.+..++.++||||+||++|||++ |+.||...... ......... .....
T Consensus 168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~~~~--~~~~~----- 238 (325)
T 3kex_A 168 DDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPDLLEKG--ERLAQ----- 238 (325)
T ss_dssp CTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT--HHHHHHHTT--CBCCC-----
T ss_pred ccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH--HHHHHHHcC--CCCCC-----
Confidence 444444455678889999999988899999999999999999999 99999753211 111110000 00000
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccc
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLND 1111 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~ 1111 (1119)
+...+..+.+++.+||+.||++|||++|++++|+++..
T Consensus 239 ---------~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~ 276 (325)
T 3kex_A 239 ---------PQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR 276 (325)
T ss_dssp ---------CTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred ---------CCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 00112346789999999999999999999999998764
No 96
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=360.06 Aligned_cols=260 Identities=25% Similarity=0.402 Sum_probs=211.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCC-------CceEEEEEeccccc-----ccHHHHHHHHhhc-CCCCEEEEeeeeecCC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNN-------SRKHWAVKKLNRSE-----TNFDVEIRTLSLV-RHRNILRIVGSCTKDE 900 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~-------~~~~vavK~~~~~~-----~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 900 (1119)
.+|..+++||+|+||.||+|.+.. .+..||||+++... ..+.+|+++++.+ +||||+++++++.+++
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~ 148 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG 148 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCC
Confidence 367778999999999999999643 34679999986432 4577899999999 8999999999999999
Q ss_pred ceEEEEeccCCCCHHHhhccCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC
Q 001226 901 HGFIVTEYMPGGTLFNVLHQNEP-------------RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD 967 (1119)
Q Consensus 901 ~~~lV~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~ 967 (1119)
..++||||+++|+|.+++..... ...+++..++.++.|++.|++|||+. +|+||||||+||+++
T Consensus 149 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~ 225 (382)
T 3tt0_A 149 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVT 225 (382)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEC
T ss_pred ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEEc
Confidence 99999999999999999987542 23589999999999999999999999 999999999999999
Q ss_pred CCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCcee
Q 001226 968 SELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIV 1046 (1119)
Q Consensus 968 ~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~ 1046 (1119)
.++.+||+|||+++...............+|+.|+|||.+.+..++.++||||+||++|||++ |+.||...... .
T Consensus 226 ~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~--~-- 301 (382)
T 3tt0_A 226 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE--E-- 301 (382)
T ss_dssp TTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--H--
T ss_pred CCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--H--
Confidence 999999999999987765443344445567889999999999999999999999999999999 99998643111 1
Q ss_pred ehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1047 TWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
........ . .... +...+.++.+++.+||+.||++|||++|++++|+++.....
T Consensus 302 -~~~~~~~~-~------~~~~------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~ 355 (382)
T 3tt0_A 302 -LFKLLKEG-H------RMDK------PSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS 355 (382)
T ss_dssp -HHHHHHTT-C------CCCC------CSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred -HHHHHHcC-C------CCCC------CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence 11100000 0 0000 11123468899999999999999999999999999876554
No 97
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9.2e-38 Score=357.33 Aligned_cols=263 Identities=23% Similarity=0.386 Sum_probs=208.6
Q ss_pred HHhhCCceeeecCCccEEEEEe-----CCCceEEEEEecccc-----cccHHHHHHHHhhc-CCCCEEEEeeeeecCCce
Q 001226 834 IRATEGRIIGKGKHGTVYRTLS-----NNSRKHWAVKKLNRS-----ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHG 902 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 902 (1119)
.+|+..+.||+|+||.||+|.+ ..++..||||+++.. ...+.+|+.+++++ +||||+++++++..++..
T Consensus 45 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~ 124 (344)
T 1rjb_A 45 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPI 124 (344)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCcc
Confidence 4667789999999999999997 345678999998532 34578999999999 899999999999999999
Q ss_pred EEEEeccCCCCHHHhhccCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCC
Q 001226 903 FIVTEYMPGGTLFNVLHQNEPR--------------------LVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSD 962 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~~~--------------------~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~ 962 (1119)
++||||+++|+|.+++...... ..+++..+..++.|+++|++|||+. +|+||||||+
T Consensus 125 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~ 201 (344)
T 1rjb_A 125 YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAAR 201 (344)
T ss_dssp EEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSGG
T ss_pred EEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChh
Confidence 9999999999999999875431 2378999999999999999999999 9999999999
Q ss_pred CeEeCCCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCC
Q 001226 963 NILLDSELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGE 1041 (1119)
Q Consensus 963 Nill~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~ 1041 (1119)
||+++.++.+||+|||++................+|+.|+|||.+.+..++.++||||+||++|||++ |+.||......
T Consensus 202 NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~ 281 (344)
T 1rjb_A 202 NVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD 281 (344)
T ss_dssp GEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS
T ss_pred hEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcH
Confidence 99999999999999999987755443334445667889999999988889999999999999999998 99998654211
Q ss_pred CCceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1042 DTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
. ....... .. ..... +...+..+.+++.+||+.||++|||++|++++|+.+....+.+
T Consensus 282 ~-~~~~~~~----~~------~~~~~------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~ 339 (344)
T 1rjb_A 282 A-NFYKLIQ----NG------FKMDQ------PFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEA 339 (344)
T ss_dssp H-HHHHHHH----TT------CCCCC------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC------
T ss_pred H-HHHHHHh----cC------CCCCC------CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHHH
Confidence 1 1000000 00 00000 1112456789999999999999999999999999998876654
No 98
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=360.26 Aligned_cols=246 Identities=26% Similarity=0.337 Sum_probs=197.5
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEE
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 904 (1119)
+.+|+..++||+|+||.||+|+++.+++.||||++++. ...+.+|.++++.+ +||||+++++++.+++..|+
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 34677789999999999999999999999999998642 23467899999988 69999999999999999999
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
||||+++|+|.+++...+ .+++..++.++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 102 v~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~ 175 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKSR---RFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI 175 (353)
T ss_dssp EEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred EEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence 999999999999998764 489999999999999999999999 99999999999999999999999999997543
Q ss_pred CCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
.. .......+||+.|+|||++.+..++.++||||+||++|||++|+.||..... .. ..... ..
T Consensus 176 ~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--~~---~~~~i----------~~ 238 (353)
T 3txo_A 176 CN--GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE--DD---LFEAI----------LN 238 (353)
T ss_dssp C-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH--HH---HHHHH----------HH
T ss_pred cC--CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH--HH---HHHHH----------Hc
Confidence 21 2233456799999999999888899999999999999999999999964311 00 00000 01
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCH------HHHHHH
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSM------REVVGF 1105 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~------~ell~~ 1105 (1119)
..... +...+..+.+++.+|++.||++||++ +|+++|
T Consensus 239 ~~~~~----p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~h 281 (353)
T 3txo_A 239 DEVVY----PTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRH 281 (353)
T ss_dssp CCCCC----CTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred CCCCC----CCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence 11110 11123467899999999999999998 777764
No 99
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=348.70 Aligned_cols=246 Identities=27% Similarity=0.386 Sum_probs=195.1
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------------------------------cccHHHHHHHHhh
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------------------------------ETNFDVEIRTLSL 883 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------------------------------~~~~~~E~~~l~~ 883 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||++... .+.+.+|+.+++.
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 92 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK 92 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence 3677789999999999999999999999999998532 2457889999999
Q ss_pred cCCCCEEEEeeeeec--CCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCC
Q 001226 884 VRHRNILRIVGSCTK--DEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKS 961 (1119)
Q Consensus 884 l~h~niv~l~~~~~~--~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp 961 (1119)
++||||+++++++.+ ++..++||||+++++|.+++... .+++..+..++.|+++|++|||+. +|+||||||
T Consensus 93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp 165 (298)
T 2zv2_A 93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK----PLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKP 165 (298)
T ss_dssp CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCG
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCH
Confidence 999999999999986 56789999999999998875432 489999999999999999999999 999999999
Q ss_pred CCeEeCCCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCC---CCCcchHHHHHHHHHHHHhCCCCCCCC
Q 001226 962 DNILLDSELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTR---LTEKSDVYSYGVILFELLFRKMPVDPS 1038 (1119)
Q Consensus 962 ~Nill~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~sDvwslG~vl~elltg~~p~~~~ 1038 (1119)
+||+++.++.+||+|||+++...... .......||+.|+|||.+.+.. ++.++||||+||++|||++|+.||...
T Consensus 166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 243 (298)
T 2zv2_A 166 SNLLVGEDGHIKIADFGVSNEFKGSD--ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE 243 (298)
T ss_dssp GGEEECTTSCEEECCCTTCEECSSSS--CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred HHEEECCCCCEEEecCCCcccccccc--ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence 99999999999999999998765422 2233457999999999887655 377899999999999999999999642
Q ss_pred CCCCCceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1039 FGEDTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
. ........... .... ......+..+.+++.+||+.||++|||++|+++|
T Consensus 244 ~-----~~~~~~~~~~~----------~~~~--~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~h 293 (298)
T 2zv2_A 244 R-----IMCLHSKIKSQ----------ALEF--PDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLH 293 (298)
T ss_dssp S-----HHHHHHHHHHC----------CCCC--CSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred c-----HHHHHHHHhcc----------cCCC--CCccccCHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence 1 10110000000 0000 0001123467899999999999999999999865
No 100
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=8e-38 Score=353.95 Aligned_cols=251 Identities=24% Similarity=0.316 Sum_probs=183.4
Q ss_pred CceeeecCCccEEEEEeCCCceEEEEEecccc-cccHHHHHHHHhhcC-CCCEEEEeeeeecCCceEEEEeccCCCCHHH
Q 001226 839 GRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-ETNFDVEIRTLSLVR-HRNILRIVGSCTKDEHGFIVTEYMPGGTLFN 916 (1119)
Q Consensus 839 ~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~e~~~~gsL~~ 916 (1119)
++.||+|+||.||+|.++.+++.||||++... ...+.+|+.+++.++ ||||+++++++.++...|+||||+++|+|.+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~ 95 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFE 95 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHH
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHH
Confidence 47899999999999999999999999998654 456788999999997 9999999999999999999999999999999
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC---ceEEEeccccccccCCCCCCccc
Q 001226 917 VLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL---EPKIGDFGMSKLISDSHSSSTRS 993 (1119)
Q Consensus 917 ~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~---~vkl~DfGla~~~~~~~~~~~~~ 993 (1119)
++.... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++ .+||+|||+++...... ....
T Consensus 96 ~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~ 167 (325)
T 3kn6_A 96 RIKKKK---HFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN--QPLK 167 (325)
T ss_dssp HHHHCS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC--------
T ss_pred HHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCC--Cccc
Confidence 998764 489999999999999999999999 999999999999997765 89999999998654322 2233
Q ss_pred ccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCCCch
Q 001226 994 AIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFWDSD 1073 (1119)
Q Consensus 994 ~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1119)
...+|+.|+|||.+.+..++.++||||+||++|||++|+.||............... ...+...........
T Consensus 168 ~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~ 239 (325)
T 3kn6_A 168 TPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEI--------MKKIKKGDFSFEGEA 239 (325)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHH--------HHHHTTTCCCCCSHH
T ss_pred ccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHH--------HHHHHcCCCCCCccc
Confidence 456899999999999999999999999999999999999999754221110000000 000111111111111
Q ss_pred HHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1074 DQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1074 ~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
....+.++.+++.+||+.||++|||++|++++
T Consensus 240 ~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 271 (325)
T 3kn6_A 240 WKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN 271 (325)
T ss_dssp HHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTC
T ss_pred ccCCCHHHHHHHHHHCCCChhHCCCHHHHhcC
Confidence 22345678999999999999999999999865
No 101
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=5.6e-38 Score=357.11 Aligned_cols=252 Identities=21% Similarity=0.261 Sum_probs=204.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccccccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEEEeccCCC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIVTEYMPGG 912 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e~~~~g 912 (1119)
.+|+..+.||+|+||.||+|.++.+++.||||+++.......+|+.++.++ +||||+++++++.+++..|+||||+++|
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg 101 (342)
T 2qr7_A 22 DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGG 101 (342)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred ccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCC
Confidence 478888999999999999999999999999999987777788899999888 7999999999999999999999999999
Q ss_pred CHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC----CceEEEeccccccccCCCC
Q 001226 913 TLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE----LEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 913 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~----~~vkl~DfGla~~~~~~~~ 988 (1119)
+|.+++...+ .+++..+..++.||+.|++|||+. +|+||||||+||++..+ +.+||+|||+++......
T Consensus 102 ~L~~~i~~~~---~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~- 174 (342)
T 2qr7_A 102 ELLDKILRQK---FFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAEN- 174 (342)
T ss_dssp BHHHHHHTCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTT-
T ss_pred cHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCC-
Confidence 9999998654 489999999999999999999999 99999999999998543 359999999998765422
Q ss_pred CCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccccc
Q 001226 989 SSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREIS 1068 (1119)
Q Consensus 989 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1119)
.......||+.|+|||.+.+..++.++||||+||++|||++|+.||....... ......... .....
T Consensus 175 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~--~~~~~~~i~----------~~~~~ 241 (342)
T 2qr7_A 175 -GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDT--PEEILARIG----------SGKFS 241 (342)
T ss_dssp -CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSC--HHHHHHHHH----------HCCCC
T ss_pred -CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCC--HHHHHHHHc----------cCCcc
Confidence 22334578999999999887778999999999999999999999997532111 111111000 00011
Q ss_pred CCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1069 FWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1069 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.........+..+.+++.+||+.||++||+++|+++|
T Consensus 242 ~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~h 278 (342)
T 2qr7_A 242 LSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRH 278 (342)
T ss_dssp CCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred cCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000111234567899999999999999999999876
No 102
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=8.1e-38 Score=374.18 Aligned_cols=256 Identities=23% Similarity=0.377 Sum_probs=210.9
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~ 911 (1119)
+|+..+.||+|+||.||+|.++.++..||||+++.. ..++.+|+.++++++||||+++++++.+++..++||||+++
T Consensus 221 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~ 300 (495)
T 1opk_A 221 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTY 300 (495)
T ss_dssp GEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCC
Confidence 566778999999999999999988999999999643 35688999999999999999999999999999999999999
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCCc
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSST 991 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~ 991 (1119)
|+|.++++.... ..+++..+..++.||++||+|||++ +|+||||||+||+++.++.+||+|||+++...... ...
T Consensus 301 g~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~ 375 (495)
T 1opk_A 301 GNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT-YTA 375 (495)
T ss_dssp CBHHHHHHHSCT-TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC-EEC
T ss_pred CCHHHHHHhcCc-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCCc-eee
Confidence 999999987542 3589999999999999999999999 99999999999999999999999999998765422 222
Q ss_pred ccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccCC
Q 001226 992 RSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFW 1070 (1119)
Q Consensus 992 ~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1119)
.....+|+.|+|||.+....++.++|||||||++|||++ |+.||...... ..... +....+.
T Consensus 376 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~--~~~~~--------------~~~~~~~- 438 (495)
T 1opk_A 376 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYEL--------------LEKDYRM- 438 (495)
T ss_dssp CTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHH--------------HHTTCCC-
T ss_pred cCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHH--------------HHcCCCC-
Confidence 233456789999999988889999999999999999999 99998653211 11000 0111100
Q ss_pred CchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1071 DSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1071 ~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
..+...+..+.+++.+||+.||++|||+++|++.|+++.++.
T Consensus 439 -~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~~ 480 (495)
T 1opk_A 439 -ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQES 480 (495)
T ss_dssp -CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSSS
T ss_pred -CCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhcc
Confidence 011123456789999999999999999999999999987654
No 103
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=1.4e-37 Score=347.04 Aligned_cols=263 Identities=21% Similarity=0.251 Sum_probs=198.7
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+|+..+.||+|+||+||+|.++.+++.||+|+++... ..+.+|+.+++.++||||+++++++.+++..++||||
T Consensus 3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 82 (292)
T 3o0g_A 3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF 82 (292)
T ss_dssp SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred CceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEec
Confidence 5677789999999999999999999999999985322 4567899999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~ 988 (1119)
+++ ++.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 83 ~~~-~l~~~~~~~~~--~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 154 (292)
T 3o0g_A 83 CDQ-DLKKYFDSCNG--DLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIP-- 154 (292)
T ss_dssp CSE-EHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSC--
T ss_pred CCC-CHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCc--
Confidence 975 66666655432 489999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCcccccccCCCcccccccCCCC-CCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhc-cccc---ccc--
Q 001226 989 SSTRSAIVGSLGYIAPENAYSTR-LTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQ-ENHE---CIC-- 1061 (1119)
Q Consensus 989 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~-~~~~---~~~-- 1061 (1119)
........+|+.|+|||.+.+.. ++.++||||+||++|||++|..||................... .... ...
T Consensus 155 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 234 (292)
T 3o0g_A 155 VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLP 234 (292)
T ss_dssp CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGST
T ss_pred cccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccc
Confidence 22334457899999999887765 7999999999999999999998875432211111100000000 0000 000
Q ss_pred -cc----cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1062 -FL----DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1062 -~~----~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.. .+............+..+.+++.+|++.||++|||++|+++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 283 (292)
T 3o0g_A 235 DYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH 283 (292)
T ss_dssp TCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred cccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 00 000000001111234567899999999999999999999875
No 104
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=3.3e-37 Score=346.11 Aligned_cols=260 Identities=31% Similarity=0.443 Sum_probs=199.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
.+|+..+.||+|+||.||+|.+.. .+|+|+++.. ...+.+|+.+++.++||||+++++++. ++..++|||
T Consensus 36 ~~~~~~~~lG~G~~g~Vy~~~~~~---~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 111 (307)
T 3lb7_A 36 SEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp TSCCEEEEEEECSSCEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred cceEEEeEecCCCCeEEEEEEECC---EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEe
Confidence 356677899999999999998764 4788877532 245788999999999999999999875 456789999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|+++++|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 112 ~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~ 186 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQET--KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp CCSSCBHHHHHHTSCC--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCCSSCC-----
T ss_pred cCCCCcHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCCCceeccccc
Confidence 9999999999975543 589999999999999999999999 99999999999999999999999999998654433
Q ss_pred CCCcccccccCCCcccccccC---CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAY---STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
.........||+.|+|||.+. +..++.++||||+||++|||++|+.||......+. ........ ...
T Consensus 187 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~--~~~~~~~~--------~~~ 256 (307)
T 3lb7_A 187 GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ--IIFMVGRG--------YAS 256 (307)
T ss_dssp -------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH--HHHHHHHT--------CCC
T ss_pred ccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHH--HHHHHhcC--------CCC
Confidence 333344567999999999875 56788999999999999999999999975322111 00000000 000
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCC
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEG 1115 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~ 1115 (1119)
+.... .....+..+.+++.+||+.+|++||+++|++++++.+.....+
T Consensus 257 ~~~~~---~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~pk 304 (307)
T 3lb7_A 257 PDLSK---LYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp CCSTT---SCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred cchhh---hhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhccc
Confidence 11100 0011235678999999999999999999999999999877653
No 105
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1.5e-37 Score=354.56 Aligned_cols=243 Identities=21% Similarity=0.310 Sum_probs=203.1
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
+.+|+..+.||+|+||.||+|+++.+++.||+|+++.. ...+.+|+.+++.++||||+++++++.+++..|+|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 35677889999999999999999999999999998532 24577899999999999999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++|+|.+++...+ .+++..+..++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 120 ~e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~ 193 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRIG---RFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 193 (350)
T ss_dssp EECCTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred EcCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccC
Confidence 99999999999998754 389999999999999999999999 999999999999999999999999999986643
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
. .....||+.|+|||.+.+..++.++||||+||++|||++|+.||..... ...+.. . ...
T Consensus 194 ~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~----~~~~~~-i----------~~~ 253 (350)
T 1rdq_E 194 R-----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP----IQIYEK-I----------VSG 253 (350)
T ss_dssp C-----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHH-H----------HHC
T ss_pred C-----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH----HHHHHH-H----------HcC
Confidence 2 2345799999999999999999999999999999999999999964311 000000 0 001
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCC-----HHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPS-----MREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~ell~~ 1105 (1119)
.... +...+..+.+++.+||+.||++||+ ++|+++|
T Consensus 254 ~~~~----p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h 294 (350)
T 1rdq_E 254 KVRF----PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH 294 (350)
T ss_dssp CCCC----CTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred CCCC----CCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhC
Confidence 1110 0112356789999999999999998 8988875
No 106
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=1e-37 Score=351.88 Aligned_cols=262 Identities=26% Similarity=0.425 Sum_probs=212.5
Q ss_pred HHhhCCceeeecCCccEEEEEe-----CCCceEEEEEecccc-----cccHHHHHHHHhhc-CCCCEEEEeeeeecCCce
Q 001226 834 IRATEGRIIGKGKHGTVYRTLS-----NNSRKHWAVKKLNRS-----ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHG 902 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 902 (1119)
.+|+..+.||+|+||.||+|.+ ..+++.||||+++.. ...+.+|+.+++++ +||||+++++++.+++..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~ 102 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT 102 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCc
Confidence 3677789999999999999985 456789999998643 24578899999999 899999999999999999
Q ss_pred EEEEeccCCCCHHHhhccCCCC---------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC
Q 001226 903 FIVTEYMPGGTLFNVLHQNEPR---------------LVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD 967 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~~~---------------~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~ 967 (1119)
++||||+++|+|.+++...... ..+++..+..++.|+++|++|||+. +|+||||||+||+++
T Consensus 103 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~ 179 (313)
T 1t46_A 103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLT 179 (313)
T ss_dssp EEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEE
T ss_pred EEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEc
Confidence 9999999999999999875421 2489999999999999999999999 999999999999999
Q ss_pred CCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCcee
Q 001226 968 SELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIV 1046 (1119)
Q Consensus 968 ~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~ 1046 (1119)
.++.+||+|||+++...............+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||........ ..
T Consensus 180 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~ 258 (313)
T 1t46_A 180 HGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK-FY 258 (313)
T ss_dssp TTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH-HH
T ss_pred CCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH-HH
Confidence 999999999999987765443333445567889999999988899999999999999999998 9999865321110 00
Q ss_pred ehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCC
Q 001226 1047 TWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEG 1115 (1119)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~ 1115 (1119)
.... .. .... .+...+..+.+++.+||+.||++|||++|++++|+++.++...
T Consensus 259 ~~~~----~~------~~~~------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 311 (313)
T 1t46_A 259 KMIK----EG------FRML------SPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTN 311 (313)
T ss_dssp HHHH----HT------CCCC------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTCC
T ss_pred HHhc----cC------CCCC------CcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHhhc
Confidence 0000 00 0000 0112245678999999999999999999999999998876543
No 107
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=6.7e-38 Score=371.45 Aligned_cols=259 Identities=24% Similarity=0.425 Sum_probs=209.7
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~ 911 (1119)
+|+..+.||+|+||.||+|.+.. +..||||+++.. .+.+.+|+.+++.++||||+++++++. ++..++||||+++
T Consensus 189 ~~~~~~~lG~G~fg~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~ 266 (454)
T 1qcf_A 189 SLKLEKKLGAGQFGEVWMATYNK-HTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFMAK 266 (454)
T ss_dssp GEEEEEEEECCSSEEEEEEEETT-TEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCCTT
T ss_pred HeEEEEEcccCCceEEEEEEECC-ccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeecCC
Confidence 56677899999999999999875 678999998643 356889999999999999999999987 5678999999999
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCCc
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSST 991 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~ 991 (1119)
|+|.++++... ...+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++...... ...
T Consensus 267 g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~-~~~ 341 (454)
T 1qcf_A 267 GSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-YTA 341 (454)
T ss_dssp CBHHHHHHSHH-HHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-HHT
T ss_pred CcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-eec
Confidence 99999998643 12478899999999999999999999 99999999999999999999999999998764321 112
Q ss_pred ccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccCC
Q 001226 992 RSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFW 1070 (1119)
Q Consensus 992 ~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1119)
.....+|+.|+|||.+....++.++|||||||++|||++ |+.||...... ..... . ....+.
T Consensus 342 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~--~~~~~----i----------~~~~~~- 404 (454)
T 1qcf_A 342 REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP--EVIRA----L----------ERGYRM- 404 (454)
T ss_dssp TCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHH----H----------HHTCCC-
T ss_pred cCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHH----H----------HcCCCC-
Confidence 233456789999999988889999999999999999999 99998643111 10000 0 000000
Q ss_pred CchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCCCC
Q 001226 1071 DSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGGMR 1118 (1119)
Q Consensus 1071 ~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~~~ 1118 (1119)
..+...+..+.+++.+||+.||++|||+++|++.|+++....+.+|.
T Consensus 405 -~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~~~~~~ 451 (454)
T 1qcf_A 405 -PRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTATESQYE 451 (454)
T ss_dssp -CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSSCCSSB
T ss_pred -CCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhccccccc
Confidence 00112345788999999999999999999999999999998887764
No 108
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=355.63 Aligned_cols=248 Identities=24% Similarity=0.340 Sum_probs=188.8
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc--cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCCC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS--ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPGG 912 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~g 912 (1119)
+|+..+.||+|+||.||+|.+..+++.||||+++.. ...+.+|+.++++++||||+++++++.+++..++||||++++
T Consensus 54 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~ 133 (349)
T 2w4o_A 54 FFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGG 133 (349)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred cEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCC
Confidence 466778999999999999999999999999998643 356788999999999999999999999999999999999999
Q ss_pred CHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC---CCceEEEeccccccccCCCCC
Q 001226 913 TLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS---ELEPKIGDFGMSKLISDSHSS 989 (1119)
Q Consensus 913 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---~~~vkl~DfGla~~~~~~~~~ 989 (1119)
+|.+++...+ .+++..+..++.|++.|+.|||+. +|+||||||+||+++. ++.+||+|||+++.....
T Consensus 134 ~L~~~l~~~~---~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~--- 204 (349)
T 2w4o_A 134 ELFDRIVEKG---YYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ--- 204 (349)
T ss_dssp BHHHHHTTCS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC-----------
T ss_pred CHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccCcc---
Confidence 9999998654 489999999999999999999999 9999999999999975 889999999999866432
Q ss_pred CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 990 STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 990 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
.......||+.|+|||.+.+..++.++||||+||++|||++|+.||........ .+.... ......
T Consensus 205 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~---~~~~i~-----------~~~~~~ 270 (349)
T 2w4o_A 205 VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQF---MFRRIL-----------NCEYYF 270 (349)
T ss_dssp --------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHH---HHHHHH-----------TTCCCC
T ss_pred cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHH---HHHHHH-----------hCCCcc
Confidence 122345789999999999998999999999999999999999999964321110 010000 000000
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
........+..+.+++.+||+.||++|||++|++++
T Consensus 271 ~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 306 (349)
T 2w4o_A 271 ISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQH 306 (349)
T ss_dssp CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred CCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000011234567899999999999999999999985
No 109
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=7.5e-38 Score=355.75 Aligned_cols=244 Identities=26% Similarity=0.393 Sum_probs=200.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|+++.+++.||||++++. ...+..|..+++.+ +||||+++++++.+++..|+|
T Consensus 17 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv 96 (345)
T 1xjd_A 17 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV 96 (345)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEE
Confidence 4677789999999999999999999999999998542 23467788888876 899999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++|+|.+++.... .+++..+..++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 97 ~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 170 (345)
T 1xjd_A 97 MEYLNGGDLMYHIQSCH---KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENML 170 (345)
T ss_dssp EECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhhccc
Confidence 99999999999998754 489999999999999999999999 999999999999999999999999999985432
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
.. .......||+.|+|||.+.+..++.++||||+||++|||++|+.||..... .. .+.. .... ..
T Consensus 171 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~--~~~~-i~~~--------~~ 235 (345)
T 1xjd_A 171 GD--AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE--EE--LFHS-IRMD--------NP 235 (345)
T ss_dssp TT--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HH--HHHH-HHHC--------CC
T ss_pred CC--CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH--HH--HHHH-HHhC--------CC
Confidence 11 223456799999999999999999999999999999999999999964311 00 0100 0000 00
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHH-HHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMR-EVVG 1104 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~-ell~ 1104 (1119)
.+. ...+..+.+++.+||+.||++||++. |+++
T Consensus 236 ~~p------~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~ 269 (345)
T 1xjd_A 236 FYP------RWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ 269 (345)
T ss_dssp CCC------TTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred CCC------cccCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence 111 11234678999999999999999997 6654
No 110
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=5.6e-37 Score=341.22 Aligned_cols=249 Identities=28% Similarity=0.443 Sum_probs=199.6
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-----------ccHHHHHHHHhhcCCCCEEEEeeeeecCCce
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-----------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHG 902 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-----------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 902 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|++.... ..+.+|+.+++.++||||+++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 35667789999999999999999999999999984321 45788999999999999999999987654
Q ss_pred EEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCCeEeCCCCc-----eEEE
Q 001226 903 FIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQ--IIHRDIKSDNILLDSELE-----PKIG 975 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~Nill~~~~~-----vkl~ 975 (1119)
++||||+++|+|.+++..... .+++..+..++.|++.|++|||+. + |+||||||+||+++.++. +||+
T Consensus 97 ~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl~ 171 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLLDKAH--PIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKVA 171 (287)
T ss_dssp EEEEECCTTCBHHHHHHCTTS--CCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEEC
T ss_pred eEEEEecCCCCHHHHHhcccC--CccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEeC
Confidence 699999999999998876543 589999999999999999999999 8 999999999999988876 9999
Q ss_pred eccccccccCCCCCCcccccccCCCcccccccC--CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhh
Q 001226 976 DFGMSKLISDSHSSSTRSAIVGSLGYIAPENAY--STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKL 1053 (1119)
Q Consensus 976 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 1053 (1119)
|||+++.... ......||+.|+|||.+. ...++.++||||+||++|||++|+.||............ ...
T Consensus 172 Dfg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~---~~~ 243 (287)
T 4f0f_A 172 DFGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFIN---MIR 243 (287)
T ss_dssp CCTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHH---HHH
T ss_pred CCCccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHH---HHh
Confidence 9999975432 234467899999999883 456789999999999999999999999753221111000 000
Q ss_pred cccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcc
Q 001226 1054 QENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKL 1109 (1119)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~ 1109 (1119)
... ..... +...+..+.+++.+||+.||++|||++|+++.|+++
T Consensus 244 ~~~------~~~~~------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 244 EEG------LRPTI------PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp HSC------CCCCC------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred ccC------CCCCC------CcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 000 00011 112245688999999999999999999999999875
No 111
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=2.5e-37 Score=341.92 Aligned_cols=252 Identities=23% Similarity=0.346 Sum_probs=205.9
Q ss_pred HHHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 832 DVIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 832 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
-+.+|+..+.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+.+++.++||||+++++++.+++..++||
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence 346788889999999999999999999999999998532 245788999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+++++|.+++.... .+++..+..++.|+++|++|||+. +++||||||+||+++.++.+|++|||.+......
T Consensus 85 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 158 (276)
T 2yex_A 85 EYCSGGELFDRIEPDI---GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYN 158 (276)
T ss_dssp ECCTTEEGGGGSBTTT---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred EecCCCcHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCC
Confidence 9999999999997654 489999999999999999999999 9999999999999999999999999999866443
Q ss_pred CCCCcccccccCCCcccccccCCCCC-CCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRL-TEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
..........||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||.......... ..+.....
T Consensus 159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~---~~~~~~~~--------- 226 (276)
T 2yex_A 159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY---SDWKEKKT--------- 226 (276)
T ss_dssp TEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHH---HHHHTTCT---------
T ss_pred cchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHH---HHhhhccc---------
Confidence 32233345678999999999887665 778999999999999999999997543222111 11111000
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.. ......+..+.+++.+||+.||++|||++|++++
T Consensus 227 ~~----~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~ 262 (276)
T 2yex_A 227 YL----NPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (276)
T ss_dssp TS----TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred cc----CchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence 00 0011224467899999999999999999999885
No 112
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=9.4e-38 Score=346.74 Aligned_cols=255 Identities=23% Similarity=0.408 Sum_probs=204.9
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMP 910 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 910 (1119)
.+|+..+.||+|+||.||+|.+.. +..||+|+++.. ..++.+|+++++.++||||+++++++.+++..++||||++
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 102 (283)
T 3gen_A 24 KDLTFLKELGTGQFGVVKYGKWRG-QYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA 102 (283)
T ss_dssp GGEEEEEECC---CEEEEEEEETT-TEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCT
T ss_pred HHHHhHhhcCCCCCceEEEEEEcC-CCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccC
Confidence 467778999999999999998874 778999998643 4568899999999999999999999999999999999999
Q ss_pred CCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCC
Q 001226 911 GGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSS 990 (1119)
Q Consensus 911 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~ 990 (1119)
+++|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++...... ..
T Consensus 103 ~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~ 176 (283)
T 3gen_A 103 NGCLLNYLREMRH--RFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YT 176 (283)
T ss_dssp TCBHHHHHHCGGG--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-HH
T ss_pred CCcHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccccccc-cc
Confidence 9999999986432 489999999999999999999999 99999999999999999999999999998664321 11
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .. ... ... ......
T Consensus 177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~--~~--~~~--~~~------~~~~~~-- 242 (283)
T 3gen_A 177 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--ET--AEH--IAQ------GLRLYR-- 242 (283)
T ss_dssp STTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HH--HHH--HHT------TCCCCC--
T ss_pred cccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh--HH--HHH--Hhc------ccCCCC--
Confidence 2233456788999999988889999999999999999998 99998653211 00 000 000 000000
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
+...+..+.+++.+||+.+|++|||++|++++|+++.++.
T Consensus 243 ----~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~e 282 (283)
T 3gen_A 243 ----PHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDEE 282 (283)
T ss_dssp ----CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred ----CCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhcc
Confidence 1112346789999999999999999999999999988764
No 113
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=5.3e-37 Score=349.53 Aligned_cols=254 Identities=23% Similarity=0.318 Sum_probs=201.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-------ccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-------TNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-------~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|+++.+++.||+|++++.. ..+.+|+.+++.+ +||||+++++++.+++..|+|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 46777899999999999999999999999999986432 2367899999887 899999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++|+|.+++...+ .+++..++.++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 89 ~e~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~ 162 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 162 (345)
T ss_dssp ECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred EeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence 99999999999998754 489999999999999999999999 999999999999999999999999999985432
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
. ........||+.|+|||.+.+..++.++||||+||++|||++|+.||......+.......... .......
T Consensus 163 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~------~~~i~~~ 234 (345)
T 3a8x_A 163 P--GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYL------FQVILEK 234 (345)
T ss_dssp T--TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHH------HHHHHHC
T ss_pred C--CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHH------HHHHHcC
Confidence 1 1233456799999999999999999999999999999999999999975322111100000000 0000111
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCH------HHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSM------REVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~------~ell~~ 1105 (1119)
.... +...+..+.+++.+||+.||++||++ +|+++|
T Consensus 235 ~~~~----p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~h 276 (345)
T 3a8x_A 235 QIRI----PRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 276 (345)
T ss_dssp CCCC----CTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTS
T ss_pred CCCC----CCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcC
Confidence 1111 11224467899999999999999995 677654
No 114
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=2.6e-37 Score=347.75 Aligned_cols=262 Identities=20% Similarity=0.258 Sum_probs=198.1
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
.+|+..+.||+|+||+||+|.+.. ++.||+|+++... ..+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQ-GRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETT-SCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred hhhHhhhhccCCCCeEEEEEEECC-CCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 357777999999999999999865 8999999985322 347789999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|++ +++.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 100 ~~~-~~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 173 (311)
T 3niz_A 100 FME-KDLKKVLDENKT--GLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIPV 173 (311)
T ss_dssp CCS-EEHHHHHHTCTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC
T ss_pred CCC-CCHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCCc
Confidence 997 488888876543 489999999999999999999999 99999999999999999999999999998764322
Q ss_pred CCCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhh-hccccc------c
Q 001226 988 SSSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWK-LQENHE------C 1059 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~-~~~~~~------~ 1059 (1119)
.......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+. ........ ...... .
T Consensus 174 --~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 250 (311)
T 3niz_A 174 --RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQ-LPKIFSILGTPNPREWPQVQEL 250 (311)
T ss_dssp --C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTH-HHHHHHHHCCCCTTTSGGGTTS
T ss_pred --ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHHCCCChHHhhhhhcc
Confidence 22334578999999998876 5689999999999999999999999975432221 11000000 000000 0
Q ss_pred cccccccccCCCc-----hHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1060 ICFLDREISFWDS-----DDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1060 ~~~~~~~~~~~~~-----~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..+.+........ .......++.+++.+||+.||++|||++|+++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 301 (311)
T 3niz_A 251 PLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH 301 (311)
T ss_dssp HHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred chhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 0000000000000 001123467899999999999999999999985
No 115
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=349.05 Aligned_cols=256 Identities=31% Similarity=0.475 Sum_probs=199.3
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc--cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS--ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~ 911 (1119)
.+|+..+.||+|+||.||+|.+. ++.||||++... ...+.+|++++++++||||+++++++.+ ..++||||+++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~~ 83 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR--AKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAEG 83 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET--TEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCTT
T ss_pred hHeeeeeEeecCCCceEEEEEEC--CeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCCC
Confidence 46677799999999999999876 688999999643 3468899999999999999999998874 47899999999
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCc-eEEEeccccccccCCCCCC
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELE-PKIGDFGMSKLISDSHSSS 990 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~-vkl~DfGla~~~~~~~~~~ 990 (1119)
|+|.+++........+++..+..++.|+++|++|||+.+..+|+||||||+||+++.++. +||+|||++......
T Consensus 84 ~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~---- 159 (307)
T 2eva_A 84 GSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH---- 159 (307)
T ss_dssp CBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-----------
T ss_pred CCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc----
Confidence 999999987665445789999999999999999999943239999999999999998886 799999999765431
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFW 1070 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1119)
.....||+.|+|||.+.+..++.++||||+|+++|||++|+.||.......... .+...... ....
T Consensus 160 -~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~----~~~~~~~~------~~~~--- 225 (307)
T 2eva_A 160 -MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI----MWAVHNGT------RPPL--- 225 (307)
T ss_dssp ------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHH----HHHHHTTC------CCCC---
T ss_pred -cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHH----HHHHhcCC------CCCc---
Confidence 223468999999999999999999999999999999999999997532211100 00000000 0000
Q ss_pred CchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1071 DSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1071 ~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
....+..+.+++.+||+.||++|||+++++++|+++.+...
T Consensus 226 ---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 266 (307)
T 2eva_A 226 ---IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFP 266 (307)
T ss_dssp ---BTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCC
T ss_pred ---ccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhcc
Confidence 01123467899999999999999999999999999876654
No 116
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-37 Score=358.10 Aligned_cols=249 Identities=18% Similarity=0.264 Sum_probs=203.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEecc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
.+|+..+.||+|+||.||+|.++.+++.||+|++... ...+.+|+.+++.++||||+++++++.++...++||||+
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~ 130 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 130 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcC
Confidence 3577789999999999999999999999999998643 345788999999999999999999999999999999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC--CCceEEEeccccccccCCC
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS--ELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~--~~~vkl~DfGla~~~~~~~ 987 (1119)
++|+|.+++..... .+++..+..++.||+.|++|||+. +|+||||||+||+++. ++.+||+|||+++......
T Consensus 131 ~gg~L~~~l~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~ 205 (387)
T 1kob_A 131 SGGELFDRIAAEDY--KMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE 205 (387)
T ss_dssp CCCBHHHHTTCTTC--CBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS
T ss_pred CCCcHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCCCc
Confidence 99999999976532 489999999999999999999999 9999999999999974 4779999999998765422
Q ss_pred CCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREI 1067 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1119)
......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ........ ..... .+.
T Consensus 206 ---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~----~~~~~~i~-~~~~~----~~~-- 271 (387)
T 1kob_A 206 ---IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD----LETLQNVK-RCDWE----FDE-- 271 (387)
T ss_dssp ---CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH----HHHHHHHH-HCCCC----CCS--
T ss_pred ---ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH----HHHHHHHH-hCCCC----CCc--
Confidence 22345789999999999999999999999999999999999999974311 10000000 00000 000
Q ss_pred cCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1068 SFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1068 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
......+.++.+++.+||+.||++|||++|++++
T Consensus 272 ----~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 272 ----DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH 305 (387)
T ss_dssp ----STTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred ----cccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence 0011224567899999999999999999999986
No 117
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=1.7e-37 Score=356.40 Aligned_cols=250 Identities=28% Similarity=0.316 Sum_probs=193.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMP 910 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 910 (1119)
.+|+..+.||+|+||+||+|+++.+++.||||++... ...+.+|+..++.++||||+++++++.+++..++||||++
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~ 99 (361)
T 3uc3_A 20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYAS 99 (361)
T ss_dssp TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCC
Confidence 4677889999999999999999999999999998543 3567899999999999999999999999999999999999
Q ss_pred CCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCc--eEEEeccccccccCCCC
Q 001226 911 GGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELE--PKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 911 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~--vkl~DfGla~~~~~~~~ 988 (1119)
+|+|.+++...+ .+++..+..++.|+++|++|||+. +|+||||||+||+++.++. +||+|||+++....
T Consensus 100 ~~~L~~~l~~~~---~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~--- 170 (361)
T 3uc3_A 100 GGELYERICNAG---RFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL--- 170 (361)
T ss_dssp SCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC--------
T ss_pred CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccccc---
Confidence 999999997654 389999999999999999999999 9999999999999987765 99999999974432
Q ss_pred CCcccccccCCCcccccccCCCCCCCc-chHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccc
Q 001226 989 SSTRSAIVGSLGYIAPENAYSTRLTEK-SDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREI 1067 (1119)
Q Consensus 989 ~~~~~~~~gt~~y~aPE~~~~~~~~~~-sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1119)
........||+.|+|||.+.+..++.+ +||||+||++|||++|+.||......... ........ ....
T Consensus 171 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~-~~~~~~~~----------~~~~ 239 (361)
T 3uc3_A 171 HSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDY-RKTIQRIL----------SVKY 239 (361)
T ss_dssp ----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCH-HHHHHHHH----------TTCC
T ss_pred cCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHH-HHHHHHHh----------cCCC
Confidence 122334579999999999888777655 89999999999999999999753221111 11000000 0000
Q ss_pred cCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1068 SFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1068 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.. ......+..+.+++.+||+.||++|||++|+++|
T Consensus 240 ~~--~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 240 SI--PDDIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp CC--CTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred CC--CCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 00 0011123467899999999999999999999987
No 118
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=351.81 Aligned_cols=238 Identities=24% Similarity=0.357 Sum_probs=201.3
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------------cccHHHHHHHHhhcCCCCEEEEeeeeecCCc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEH 901 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 901 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||+++.. ...+.+|+.+++.++||||+++++++.+++.
T Consensus 24 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~ 103 (335)
T 3dls_A 24 QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGF 103 (335)
T ss_dssp HHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred cceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCE
Confidence 5788889999999999999999999999999988542 2357789999999999999999999999999
Q ss_pred eEEEEeccCCC-CHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccc
Q 001226 902 GFIVTEYMPGG-TLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMS 980 (1119)
Q Consensus 902 ~~lV~e~~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla 980 (1119)
.++||||+.+| +|.+++.... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~lv~e~~~~g~~l~~~~~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~a 177 (335)
T 3dls_A 104 FQLVMEKHGSGLDLFAFIDRHP---RLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFGSA 177 (335)
T ss_dssp EEEEEECCTTSCBHHHHHHTCC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred EEEEEEeCCCCccHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecccc
Confidence 99999999777 9999998765 389999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCCCcccccccCCCcccccccCCCCC-CCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccc
Q 001226 981 KLISDSHSSSTRSAIVGSLGYIAPENAYSTRL-TEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHEC 1059 (1119)
Q Consensus 981 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1119)
+...... ......||+.|+|||.+.+..+ +.++||||+||++|||++|+.||.......
T Consensus 178 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~----------------- 237 (335)
T 3dls_A 178 AYLERGK---LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETV----------------- 237 (335)
T ss_dssp EECCTTC---CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGGT-----------------
T ss_pred eECCCCC---ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHHH-----------------
Confidence 8765432 2234578999999999888776 789999999999999999999986421000
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1060 ICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...... +...+..+.+++.+||+.||++|||++|++++
T Consensus 238 ----~~~~~~----~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 238 ----EAAIHP----PYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp ----TTCCCC----SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred ----hhccCC----CcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000000 00123467899999999999999999999987
No 119
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=356.68 Aligned_cols=246 Identities=22% Similarity=0.283 Sum_probs=195.4
Q ss_pred hCCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCCC
Q 001226 837 TEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPGG 912 (1119)
Q Consensus 837 ~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~g 912 (1119)
...+.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+.+++.++||||+++++++.+++..++||||++++
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 3357899999999999999999999999998642 356889999999999999999999999999999999999999
Q ss_pred CHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe--CCCCceEEEeccccccccCCCCCC
Q 001226 913 TLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL--DSELEPKIGDFGMSKLISDSHSSS 990 (1119)
Q Consensus 913 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill--~~~~~vkl~DfGla~~~~~~~~~~ 990 (1119)
+|.+++.... ..+++..+..++.|+++|++|||+. +|+||||||+||++ +.++.+||+|||+++......
T Consensus 172 ~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~--- 243 (373)
T 2x4f_A 172 ELFDRIIDES--YNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE--- 243 (373)
T ss_dssp EEHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC---
T ss_pred cHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc---
Confidence 9999987643 2489999999999999999999999 99999999999999 677899999999998765432
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFW 1070 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1119)
......||+.|+|||.+.+..++.++||||+||++|||++|+.||...... ...... . .......
T Consensus 244 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~----~~~~~i-~----------~~~~~~~ 308 (373)
T 2x4f_A 244 KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA----ETLNNI-L----------ACRWDLE 308 (373)
T ss_dssp BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH----HHHHHH-H----------HTCCCSC
T ss_pred ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH----HHHHHH-H----------hccCCCC
Confidence 223456999999999998889999999999999999999999999643111 000000 0 0000000
Q ss_pred CchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1071 DSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1071 ~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.......+..+.+++.+||+.||++|||++|++++
T Consensus 309 ~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~h 343 (373)
T 2x4f_A 309 DEEFQDISEEAKEFISKLLIKEKSWRISASEALKH 343 (373)
T ss_dssp SGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred hhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 01111234577899999999999999999999984
No 120
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.4e-37 Score=363.57 Aligned_cols=251 Identities=22% Similarity=0.295 Sum_probs=202.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc-------ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR-------SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~-------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
+|+..++||+|+||+||+|+++.+++.||+|++++ ....+.+|+.+++.++||||+++++++.+++..|+|||
T Consensus 75 ~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~E 154 (437)
T 4aw2_A 75 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMD 154 (437)
T ss_dssp GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEEC
T ss_pred heEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEe
Confidence 56677999999999999999999999999999853 23448899999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|+++|+|.+++..... .+++..++.++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 155 y~~gg~L~~~l~~~~~--~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~ 229 (437)
T 4aw2_A 155 YYVGGDLLTLLSKFED--RLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDG 229 (437)
T ss_dssp CCTTCBHHHHHHTTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS
T ss_pred cCCCCcHHHHHHHccC--CCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchhhhhhcccCC
Confidence 9999999999987432 489999999999999999999999 99999999999999999999999999998664422
Q ss_pred CCCcccccccCCCcccccccC-----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAY-----STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
.......+||+.|+|||++. ...++.++||||+||++|||++|+.||...... + .+... .....
T Consensus 230 -~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~--~--~~~~i-~~~~~----- 298 (437)
T 4aw2_A 230 -TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLV--E--TYGKI-MNHKE----- 298 (437)
T ss_dssp -CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH--H--HHHHH-HTHHH-----
T ss_pred -CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChh--H--HHHhh-hhccc-----
Confidence 22233467999999999886 567899999999999999999999999743111 0 00000 00000
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCC--CCCHHHHHHH
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADM--RPSMREVVGF 1105 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPs~~ell~~ 1105 (1119)
...++. .....+.++.+++.+|++.+|++ ||+++|+++|
T Consensus 299 -~~~~p~---~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H 339 (437)
T 4aw2_A 299 -RFQFPT---QVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH 339 (437)
T ss_dssp -HCCCCS---SCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred -cccCCc---ccccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence 000000 00112346789999999998888 9999999986
No 121
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.4e-37 Score=354.11 Aligned_cols=259 Identities=25% Similarity=0.318 Sum_probs=201.1
Q ss_pred CHHHH-HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---------cccHHHHHHHHhhcCCCCEEEEeeeeec
Q 001226 829 RYEDV-IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---------ETNFDVEIRTLSLVRHRNILRIVGSCTK 898 (1119)
Q Consensus 829 ~~~~~-~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---------~~~~~~E~~~l~~l~h~niv~l~~~~~~ 898 (1119)
...++ .+|+..+.||+|+||.||+|.+..+++.||+|++... ...+.+|+++++.++||||+++++++.+
T Consensus 20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~ 99 (345)
T 3hko_A 20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED 99 (345)
T ss_dssp CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence 34444 5788899999999999999999999999999988432 2457889999999999999999999999
Q ss_pred CCceEEEEeccCCCCHHHhhccCCC-------------------------------------CCCCCHHHHHHHHHHHHH
Q 001226 899 DEHGFIVTEYMPGGTLFNVLHQNEP-------------------------------------RLVLDWNTRYHIALGIAQ 941 (1119)
Q Consensus 899 ~~~~~lV~e~~~~gsL~~~l~~~~~-------------------------------------~~~l~~~~~~~i~~~i~~ 941 (1119)
++..++||||+++|+|.+++..... ...+++..++.++.|+++
T Consensus 100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~ 179 (345)
T 3hko_A 100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS 179 (345)
T ss_dssp SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999863110 112457778899999999
Q ss_pred HHHHHHhCCCCCeEecCCCCCCeEeCCCC--ceEEEeccccccccCCCC--CCcccccccCCCcccccccCC--CCCCCc
Q 001226 942 GLSYLHYDCVPQIIHRDIKSDNILLDSEL--EPKIGDFGMSKLISDSHS--SSTRSAIVGSLGYIAPENAYS--TRLTEK 1015 (1119)
Q Consensus 942 ~l~~LH~~~~~~ivH~Dlkp~Nill~~~~--~vkl~DfGla~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~--~~~~~~ 1015 (1119)
|++|||+. +|+||||||+||+++.++ .+||+|||+++....... ........||+.|+|||.+.+ ..++.+
T Consensus 180 ~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~ 256 (345)
T 3hko_A 180 ALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPK 256 (345)
T ss_dssp HHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTH
T ss_pred HHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcH
Confidence 99999999 999999999999998776 899999999986643221 122345679999999998865 678999
Q ss_pred chHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCC
Q 001226 1016 SDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADM 1095 (1119)
Q Consensus 1016 sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~ 1095 (1119)
+||||+||++|||++|+.||......+ .. . .................+..+.+++.+||+.||++
T Consensus 257 ~DiwslG~il~el~~g~~pf~~~~~~~----~~-~----------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~ 321 (345)
T 3hko_A 257 CDAWSAGVLLHLLLMGAVPFPGVNDAD----TI-S----------QVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDE 321 (345)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCSSHHH----HH-H----------HHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCChHH----HH-H----------HHHhcccccCCcccccCCHHHHHHHHHHcCCChhH
Confidence 999999999999999999996432110 00 0 00111111111111123457889999999999999
Q ss_pred CCCHHHHHHH
Q 001226 1096 RPSMREVVGF 1105 (1119)
Q Consensus 1096 RPs~~ell~~ 1105 (1119)
||+++|++++
T Consensus 322 Rps~~~~l~h 331 (345)
T 3hko_A 322 RFDAMRALQH 331 (345)
T ss_dssp SCCHHHHHHS
T ss_pred CCCHHHHhcC
Confidence 9999999985
No 122
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.5e-38 Score=357.04 Aligned_cols=267 Identities=24% Similarity=0.337 Sum_probs=188.5
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-cccHHHHHHHHhh--cCCCCEEEEeeeeecCC----ceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-ETNFDVEIRTLSL--VRHRNILRIVGSCTKDE----HGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~~~lV~e 907 (1119)
+|+..+.||+|+||.||+|.+. ++.||||+++.. ...+.+|.+++.. ++||||+++++++.+.. ..++|||
T Consensus 4 ~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e 81 (303)
T 3gxj_A 4 TIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD 81 (303)
T ss_dssp GCCCCEEEEECSSSEEEEC-CT--TSCEEEEECC-TTHHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEEEEEE
T ss_pred eeeehhhccCCCCeEEEEEEEc--CcceEEEEecccchhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeEEEEe
Confidence 5777899999999999999765 789999998643 3456778888877 78999999999998776 6899999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEecCCCCCCeEeCCCCceEEEeccc
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLH--------YDCVPQIIHRDIKSDNILLDSELEPKIGDFGM 979 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGl 979 (1119)
|+++|+|.++++.. .+++..+..++.|++.|++||| +. +|+||||||+||+++.++.+||+|||+
T Consensus 82 ~~~~g~L~~~l~~~----~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~~~kl~DFg~ 154 (303)
T 3gxj_A 82 YHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIADLGL 154 (303)
T ss_dssp CCTTCCHHHHHHHC----CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-BCCCCC
T ss_pred ccCCCCHHHHHhcc----CcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCCCEEEeecCc
Confidence 99999999999764 3778889999999999999999 66 999999999999999999999999999
Q ss_pred cccccCCCCC--CcccccccCCCcccccccCCC------CCCCcchHHHHHHHHHHHHhC----------CCCCCCCCCC
Q 001226 980 SKLISDSHSS--STRSAIVGSLGYIAPENAYST------RLTEKSDVYSYGVILFELLFR----------KMPVDPSFGE 1041 (1119)
Q Consensus 980 a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~------~~~~~sDvwslG~vl~elltg----------~~p~~~~~~~ 1041 (1119)
++........ .......||+.|+|||.+.+. .++.++||||+||++|||++| +.||......
T Consensus 155 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~~ 234 (303)
T 3gxj_A 155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS 234 (303)
T ss_dssp -CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-
T ss_pred ceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccCCC
Confidence 9766543221 122344799999999988765 344689999999999999999 5666543222
Q ss_pred CCceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCCC
Q 001226 1042 DTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGGM 1117 (1119)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~~ 1117 (1119)
............. ....+..... .........+.+++.+||+.||++|||++++++.|+++.++.+.+|
T Consensus 235 ~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~~~~~~ 303 (303)
T 3gxj_A 235 DPSVEEMRKVVCE------QKLRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEGIKM 303 (303)
T ss_dssp CCCCC-CHHHHTT------SCCCCCCCGG-GGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC-----
T ss_pred CccHHHHHHHHHH------hhcCCCcccc-ccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhhcccCC
Confidence 2222111111100 0011111100 1123456678999999999999999999999999999999887654
No 123
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-36 Score=345.53 Aligned_cols=270 Identities=25% Similarity=0.334 Sum_probs=204.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-ccHHHHHHHHhhc--CCCCEEEEeeeeecC----CceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-TNFDVEIRTLSLV--RHRNILRIVGSCTKD----EHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~E~~~l~~l--~h~niv~l~~~~~~~----~~~~lV~ 906 (1119)
.+|+..+.||+|+||.||+|.+. ++.||||++.... ..+.+|.+++... +||||+++++++.+. ...++||
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~ 114 (337)
T 3mdy_A 37 KQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLIT 114 (337)
T ss_dssp HHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEE
T ss_pred cceEEEeEeecCCCeEEEEEEEC--CceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEE
Confidence 57888899999999999999886 7899999985433 3445566665554 899999999998876 6789999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDC-----VPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
||+++|+|.++++.. .+++..+..++.|++.|++|||+.+ .++|+||||||+||+++.++.+||+|||+++
T Consensus 115 e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~ 190 (337)
T 3mdy_A 115 DYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 190 (337)
T ss_dssp CCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred eccCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCce
Confidence 999999999999764 3899999999999999999999762 3489999999999999999999999999997
Q ss_pred cccCCCCC--CcccccccCCCcccccccCCCCCCCc------chHHHHHHHHHHHHhC----------CCCCCCCCCCCC
Q 001226 982 LISDSHSS--STRSAIVGSLGYIAPENAYSTRLTEK------SDVYSYGVILFELLFR----------KMPVDPSFGEDT 1043 (1119)
Q Consensus 982 ~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~------sDvwslG~vl~elltg----------~~p~~~~~~~~~ 1043 (1119)
........ .......||+.|+|||.+.+..++.+ +||||+||++|||++| +.||........
T Consensus 191 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~ 270 (337)
T 3mdy_A 191 KFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDP 270 (337)
T ss_dssp ECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred eeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCC
Confidence 66443221 11234579999999999887766665 9999999999999999 555543322222
Q ss_pred ceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1044 DIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
.......... .....+..... ......+..+.+++.+||+.||++|||++|++++|+++.+..+.+
T Consensus 271 ~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~ 336 (337)
T 3mdy_A 271 SYEDMREIVC------IKKLRPSFPNR-WSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQDIK 336 (337)
T ss_dssp CHHHHHHHHT------TSCCCCCCCGG-GGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTTTCC
T ss_pred chhhhHHHHh------hhccCcccccc-chhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhcccC
Confidence 1111111000 00011111100 112356678999999999999999999999999999999887754
No 124
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=4.6e-37 Score=347.70 Aligned_cols=248 Identities=23% Similarity=0.307 Sum_probs=203.4
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 903 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+.+++.++||||+++++++.+++..+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV 91 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 4688889999999999999999999999999988532 235889999999999999999999999999999
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC----ceEEEeccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL----EPKIGDFGM 979 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~----~vkl~DfGl 979 (1119)
+||||+++++|.+++.... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++ .+||+|||+
T Consensus 92 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~ 165 (321)
T 2a2a_A 92 LILELVSGGELFDFLAQKE---SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGL 165 (321)
T ss_dssp EEECCCCSCBHHHHHHTCS---CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCTT
T ss_pred EEEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCcc
Confidence 9999999999999998654 488999999999999999999999 999999999999999888 799999999
Q ss_pred cccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccc
Q 001226 980 SKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHEC 1059 (1119)
Q Consensus 980 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1119)
+....... ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||...... . .... ..
T Consensus 166 ~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~--~~~~-i~------ 231 (321)
T 2a2a_A 166 AHEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--E--TLAN-IT------ 231 (321)
T ss_dssp CEECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--H--HHHH-HH------
T ss_pred ceecCccc---cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHH--H--HHHH-HH------
Confidence 98765422 223456899999999999899999999999999999999999999643110 0 0000 00
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1060 ICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..............+..+.+++.+||+.||++|||++|++++
T Consensus 232 ----~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h 273 (321)
T 2a2a_A 232 ----SVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (321)
T ss_dssp ----TTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred ----hcccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 000000000011224567899999999999999999999985
No 125
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.4e-37 Score=352.42 Aligned_cols=259 Identities=22% Similarity=0.322 Sum_probs=191.4
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCce---EEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCce--
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRK---HWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHG-- 902 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~---~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-- 902 (1119)
.+|+..+.||+|+||.||+|.+..++. .||||+++.. ...+.+|+.+++.++||||+++++++......
T Consensus 23 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 102 (323)
T 3qup_A 23 QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGR 102 (323)
T ss_dssp --CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-----
T ss_pred hHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccC
Confidence 367778999999999999999887664 8999998542 24578999999999999999999999876655
Q ss_pred ----EEEEeccCCCCHHHhhccCCC---CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEE
Q 001226 903 ----FIVTEYMPGGTLFNVLHQNEP---RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIG 975 (1119)
Q Consensus 903 ----~lV~e~~~~gsL~~~l~~~~~---~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~ 975 (1119)
++||||+++|+|.+++..... ...+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+
T Consensus 103 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~kl~ 179 (323)
T 3qup_A 103 LPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCVA 179 (323)
T ss_dssp --CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEEC
T ss_pred CCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCEEEe
Confidence 999999999999999965421 22589999999999999999999999 99999999999999999999999
Q ss_pred eccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhc
Q 001226 976 DFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQ 1054 (1119)
Q Consensus 976 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~ 1054 (1119)
|||+++...............+|+.|+|||.+.+..++.++||||+||++|||++ |+.||...... ... .. ...
T Consensus 180 Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~--~~-~~~ 254 (323)
T 3qup_A 180 DFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA--EIY--NY-LIG 254 (323)
T ss_dssp CCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHH--HH-HHT
T ss_pred eccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChH--HHH--HH-Hhc
Confidence 9999987755443344445567889999999988899999999999999999999 89998753211 110 00 000
Q ss_pred ccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1055 ENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
. . .. ..+...+..+.+++.+||+.||++|||++++++.++++.+..
T Consensus 255 ~-~--------~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~ 300 (323)
T 3qup_A 255 G-N--------RL----KQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL 300 (323)
T ss_dssp T-C--------CC----CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred C-C--------CC----CCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 0 0 00 001122356889999999999999999999999999886543
No 126
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=1.7e-37 Score=367.57 Aligned_cols=259 Identities=26% Similarity=0.425 Sum_probs=205.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~ 911 (1119)
+|+..+.||+|+||.||+|.+.. +..||||+++.. .+++.+|+.+++.++||||+++++++.+ +..++||||+++
T Consensus 185 ~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~ 262 (452)
T 1fmk_A 185 SLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSK 262 (452)
T ss_dssp GEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTT
T ss_pred HceeeeeecCCCCeEEEEEEECC-CceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhhcC
Confidence 56677899999999999999886 567999999643 3568899999999999999999999876 678999999999
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCCc
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSST 991 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~ 991 (1119)
|+|.++++... ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...... ...
T Consensus 263 gsL~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-~~~ 337 (452)
T 1fmk_A 263 GSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-YTA 337 (452)
T ss_dssp CBHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC----------
T ss_pred CCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCc-eec
Confidence 99999998542 12488999999999999999999999 99999999999999999999999999998765422 222
Q ss_pred ccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccCC
Q 001226 992 RSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFW 1070 (1119)
Q Consensus 992 ~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1119)
.....+|+.|+|||.+.+..++.++|||||||++|||++ |+.||...... .... ...... ...
T Consensus 338 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~--~~~~----~i~~~~--------~~~-- 401 (452)
T 1fmk_A 338 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--EVLD----QVERGY--------RMP-- 401 (452)
T ss_dssp -----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHH----HHHTTC--------CCC--
T ss_pred ccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH--HHHH----HHHcCC--------CCC--
Confidence 233457889999999988899999999999999999999 99998643111 1000 000000 000
Q ss_pred CchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCCCC
Q 001226 1071 DSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGGMR 1118 (1119)
Q Consensus 1071 ~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~~~ 1118 (1119)
.+...+..+.+++.+||+.||++|||++++++.|+++....++.|+
T Consensus 402 --~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~~~ 447 (452)
T 1fmk_A 402 --CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQ 447 (452)
T ss_dssp --CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCCC
T ss_pred --CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCcccc
Confidence 0112345678999999999999999999999999999988887765
No 127
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=4.8e-37 Score=363.40 Aligned_cols=251 Identities=24% Similarity=0.394 Sum_probs=203.8
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc--cccHHHHHHHHhhcCCCCEEEEeeeeecCC-ceEEEEeccC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS--ETNFDVEIRTLSLVRHRNILRIVGSCTKDE-HGFIVTEYMP 910 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~lV~e~~~ 910 (1119)
.+|+..+.||+|+||.||+|.+. ++.||||+++.. ...+.+|+.+++.++||||+++++++.+.. ..|+||||++
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~~--~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~ 270 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA 270 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET--TEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCT
T ss_pred HHeEEEeeecCcCCeeEEEEEec--CCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecC
Confidence 35666789999999999999886 679999999653 456889999999999999999999987655 7899999999
Q ss_pred CCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCC
Q 001226 911 GGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSS 990 (1119)
Q Consensus 911 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~ 990 (1119)
+|+|.++++..+. ..+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 271 ~g~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~---- 342 (450)
T 1k9a_A 271 KGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---- 342 (450)
T ss_dssp TCBHHHHHHHHCT-TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC------
T ss_pred CCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccccccc----
Confidence 9999999987642 2478999999999999999999999 9999999999999999999999999999854321
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
.....+++.|+|||.+.+..++.++|||||||++|||++ |+.||......+ ..... .... +.
T Consensus 343 -~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i----~~~~--------~~-- 405 (450)
T 1k9a_A 343 -QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRV----EKGY--------KM-- 405 (450)
T ss_dssp -----CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--HHHHH----HTTC--------CC--
T ss_pred -ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHH----HcCC--------CC--
Confidence 122357889999999999999999999999999999998 999997542211 11100 0000 00
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
..+...+..+.+++.+||+.||++|||++++++.|+++.+..
T Consensus 406 --~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~~ 447 (450)
T 1k9a_A 406 --DAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTHE 447 (450)
T ss_dssp --CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred --CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHhh
Confidence 011123457889999999999999999999999999987653
No 128
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=5.8e-37 Score=356.71 Aligned_cols=274 Identities=18% Similarity=0.191 Sum_probs=205.4
Q ss_pred HHhhCCceeeec--CCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 834 IRATEGRIIGKG--KHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G--~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+|+..++||+| +||.||+|+++.+++.||||+++... ..+.+|+.+++.++||||+++++++.+++..|+|
T Consensus 25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 104 (389)
T 3gni_B 25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVV 104 (389)
T ss_dssp GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEE
Confidence 467888999999 99999999999999999999985432 3467799999999999999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++|+|.+++..... ..+++..+..++.||+.|++|||+. +|+||||||+||+++.++.+||+|||.+.....
T Consensus 105 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~ 180 (389)
T 3gni_B 105 TSFMAYGSAKDLICTHFM-DGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMIS 180 (389)
T ss_dssp EECCTTCBHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEECEE
T ss_pred EEccCCCCHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceeecc
Confidence 999999999999987642 2489999999999999999999999 999999999999999999999999999865432
Q ss_pred CC-----CCCcccccccCCCcccccccCC--CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhc----
Q 001226 986 SH-----SSSTRSAIVGSLGYIAPENAYS--TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQ---- 1054 (1119)
Q Consensus 986 ~~-----~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~---- 1054 (1119)
.. .........||+.|+|||.+.+ ..++.++||||+||++|||++|+.||...................
T Consensus 181 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 260 (389)
T 3gni_B 181 HGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDT 260 (389)
T ss_dssp TTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC-----------
T ss_pred ccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccccc
Confidence 21 1112233578999999999887 678999999999999999999999997542221111000000000
Q ss_pred ---ccccc---------ccccccccc-----------CCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH--HHcc
Q 001226 1055 ---ENHEC---------ICFLDREIS-----------FWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF--LIKL 1109 (1119)
Q Consensus 1055 ---~~~~~---------~~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~--L~~~ 1109 (1119)
..... ......... .........+..+.+++.+||+.||++|||++|++++ ++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~ 340 (389)
T 3gni_B 261 STIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQI 340 (389)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC
T ss_pred cccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHH
Confidence 00000 000000000 0000112234568999999999999999999999987 5554
Q ss_pred cc
Q 001226 1110 ND 1111 (1119)
Q Consensus 1110 ~~ 1111 (1119)
..
T Consensus 341 ~~ 342 (389)
T 3gni_B 341 KR 342 (389)
T ss_dssp --
T ss_pred hh
Confidence 43
No 129
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=7e-37 Score=355.95 Aligned_cols=252 Identities=22% Similarity=0.300 Sum_probs=192.7
Q ss_pred HhhCC-ceeeecCCccEEEEEeCCCceEEEEEecccccccHHHHHHHHh-hcCCCCEEEEeeeeec----CCceEEEEec
Q 001226 835 RATEG-RIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTLS-LVRHRNILRIVGSCTK----DEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~-~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l~-~l~h~niv~l~~~~~~----~~~~~lV~e~ 908 (1119)
+|... ++||+|+||+||+|.++.+++.||||+++. ...+.+|+.++. ..+||||+++++++.. +...|+||||
T Consensus 62 ~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~ 140 (400)
T 1nxk_A 62 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMEC 140 (400)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEEC
T ss_pred cceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEe
Confidence 34443 689999999999999999999999999864 345778888874 5589999999998865 5678999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC---CCceEEEeccccccccC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS---ELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---~~~vkl~DfGla~~~~~ 985 (1119)
+++|+|.+++..... ..+++..+..++.||+.||.|||+. +|+||||||+||+++. ++.+||+|||+++....
T Consensus 141 ~~gg~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~ 216 (400)
T 1nxk_A 141 LDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTS 216 (400)
T ss_dssp CCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-
T ss_pred CCCCcHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecccccccCC
Confidence 999999999987542 3589999999999999999999999 9999999999999998 78999999999986543
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||............... ....
T Consensus 217 ~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~-i~~~---------- 282 (400)
T 1nxk_A 217 H---NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTR-IRMG---------- 282 (400)
T ss_dssp -------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHH-HHHT----------
T ss_pred C---CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHH-HHcC----------
Confidence 2 2233457899999999999999999999999999999999999999754322211000000 0000
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
............+.++.+++.+||+.||++|||++|+++|
T Consensus 283 ~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 283 QYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp CCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred cccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000000011234567899999999999999999999986
No 130
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=2.8e-37 Score=352.22 Aligned_cols=245 Identities=25% Similarity=0.329 Sum_probs=201.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|+++.+++.||||++++. ...+.+|..++..+ +||+|+++++++.+.+..|+|
T Consensus 20 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 99 (353)
T 2i0e_A 20 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV 99 (353)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEE
Confidence 4677779999999999999999999999999998542 23467899999887 799999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||++||+|.+++...+ .+++..++.++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 100 ~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 173 (353)
T 2i0e_A 100 MEYVNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 173 (353)
T ss_dssp EECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence 99999999999998754 389999999999999999999999 999999999999999999999999999985432
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
. ........||+.|+|||.+.+..++.++||||+||++|||++|+.||..... . ...... ...
T Consensus 174 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--~---~~~~~i----------~~~ 236 (353)
T 2i0e_A 174 D--GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--D---ELFQSI----------MEH 236 (353)
T ss_dssp T--TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--H---HHHHHH----------HHC
T ss_pred C--CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH--H---HHHHHH----------HhC
Confidence 1 1233456799999999999999999999999999999999999999964311 0 000000 111
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCC-----HHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPS-----MREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs-----~~ell~~ 1105 (1119)
.... +...+.++.+++.+||+.||++||+ ++|+++|
T Consensus 237 ~~~~----p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h 277 (353)
T 2i0e_A 237 NVAY----PKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 277 (353)
T ss_dssp CCCC----CTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred CCCC----CCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence 1111 1122456789999999999999995 6888765
No 131
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=1e-36 Score=340.68 Aligned_cols=265 Identities=18% Similarity=0.246 Sum_probs=208.3
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecc--cccccHHHHHHHHhhcCCCCEEEEeeee-ecCCceEEEEeccC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLN--RSETNFDVEIRTLSLVRHRNILRIVGSC-TKDEHGFIVTEYMP 910 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lV~e~~~ 910 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||+.. .....+.+|+.+++.++|++++..+.++ .+++..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~- 87 (296)
T 4hgt_A 9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL- 87 (296)
T ss_dssp --CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-
T ss_pred CceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc-
Confidence 46778899999999999999999999999999763 3446789999999999988777666655 5667789999999
Q ss_pred CCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe---CCCCceEEEeccccccccCCC
Q 001226 911 GGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL---DSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 911 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~vkl~DfGla~~~~~~~ 987 (1119)
+++|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||++ +.++.+||+|||+++......
T Consensus 88 ~~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~ 162 (296)
T 4hgt_A 88 GPSLEDLFNFCSR--KFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDAR 162 (296)
T ss_dssp CCBHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred CCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcc
Confidence 9999999986543 489999999999999999999999 99999999999999 788999999999998765432
Q ss_pred CC-----CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 988 SS-----STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 988 ~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
.. .......||+.|+|||.+.+..++.++||||+||++|||++|+.||........... .....
T Consensus 163 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-~~~~~---------- 231 (296)
T 4hgt_A 163 THQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK-YERIS---------- 231 (296)
T ss_dssp TCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH-HHHHH----------
T ss_pred cCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhh-hhhhh----------
Confidence 21 223456799999999999999999999999999999999999999976432221111 00000
Q ss_pred ccccccCCC-chHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1063 LDREISFWD-SDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1063 ~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
........ ......+..+.+++.+||+.||++|||++++++.|+++.++.+..
T Consensus 232 -~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~~ 285 (296)
T 4hgt_A 232 -EKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFS 285 (296)
T ss_dssp -HHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTCC
T ss_pred -cccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 00000000 000112457889999999999999999999999999998876544
No 132
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=1.8e-37 Score=345.49 Aligned_cols=256 Identities=23% Similarity=0.372 Sum_probs=211.1
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc---ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE---TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMP 910 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 910 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|+++... ..+.+|+.+++.++||||+++++++.+++..++||||++
T Consensus 13 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~ 92 (288)
T 3kfa_A 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT 92 (288)
T ss_dssp GGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred cceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCC
Confidence 35677789999999999999999999999999986543 457899999999999999999999999999999999999
Q ss_pred CCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCC
Q 001226 911 GGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSS 990 (1119)
Q Consensus 911 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~ 990 (1119)
+++|.+++..... ..+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||.+....... ..
T Consensus 93 ~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~ 167 (288)
T 3kfa_A 93 YGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT-YT 167 (288)
T ss_dssp TEEHHHHHHHCCT-TTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS-SE
T ss_pred CCcHHHHHHhccc-CCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccCCc-cc
Confidence 9999999987543 3589999999999999999999999 99999999999999999999999999998765422 22
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
......+|+.|+|||.+.+..++.++||||+|+++|||++ |..||...... .... .. ......
T Consensus 168 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~--~~~~---~~-----------~~~~~~ 231 (288)
T 3kfa_A 168 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYE---LL-----------EKDYRM 231 (288)
T ss_dssp EETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHH---HH-----------HTTCCC
T ss_pred cccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHH---HH-----------hccCCC
Confidence 3344567889999999988889999999999999999999 99998643211 1100 00 000000
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
..+...+..+.+++.+|++.||++|||++|+++.|+++.++
T Consensus 232 --~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 232 --ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp --CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --CCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 00112235688999999999999999999999999988764
No 133
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=341.28 Aligned_cols=246 Identities=24% Similarity=0.380 Sum_probs=182.5
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++.+++..++||
T Consensus 11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (278)
T 3cok_A 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVL 90 (278)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEE
Confidence 4677789999999999999999988999999998532 245788999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+++++|.+++..... .+++..+..++.|+++|++|||+. +++||||||+||+++.++.+||+|||.+......
T Consensus 91 e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~ 165 (278)
T 3cok_A 91 EMCHNGEMNRYLKNRVK--PFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP 165 (278)
T ss_dssp ECCTTEEHHHHHHTCSS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred ecCCCCcHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeeccCC
Confidence 99999999999986532 589999999999999999999999 9999999999999999999999999999866432
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
. .......+|+.|+|||.+.+..++.++||||+|+++|||++|+.||......... .. .....
T Consensus 166 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~----~~-----------~~~~~ 228 (278)
T 3cok_A 166 H--EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTL----NK-----------VVLAD 228 (278)
T ss_dssp ----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC--------------------CCSSC
T ss_pred C--CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHH----HH-----------Hhhcc
Confidence 1 1223456899999999998888999999999999999999999999753211110 00 00000
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.. .+...+..+.+++.+||+.||++|||+++++++
T Consensus 229 ~~----~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 263 (278)
T 3cok_A 229 YE----MPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDH 263 (278)
T ss_dssp CC----CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred cC----CccccCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence 00 011123467899999999999999999999875
No 134
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=3.8e-37 Score=363.67 Aligned_cols=244 Identities=29% Similarity=0.421 Sum_probs=202.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|..++.||+|+||.||+|.+..+++.||||+++.. ...+.+|+.+++.++||||+++++++...+..|+||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 3577789999999999999999999999999998532 235789999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+++|+|.+++...+ .+++..+..++.||+.|++|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 96 E~~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~ 169 (476)
T 2y94_A 96 EYVSGGELFDYICKNG---RLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169 (476)
T ss_dssp ECCSSEEHHHHTTSSS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCTT
T ss_pred eCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhcccc
Confidence 9999999999998654 489999999999999999999999 9999999999999999999999999999876542
Q ss_pred CCCCcccccccCCCcccccccCCCCC-CCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRL-TEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
. ......||+.|+|||.+.+..+ +.++||||+||++|||++|+.||..... ........ +.
T Consensus 170 ~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~-----~~~~~~i~----------~~ 231 (476)
T 2y94_A 170 E---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV-----PTLFKKIC----------DG 231 (476)
T ss_dssp C---CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS-----HHHHHHHH----------TT
T ss_pred c---cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH-----HHHHHHHh----------cC
Confidence 2 2334579999999999888765 6899999999999999999999974311 11111000 00
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
... .+...+..+.+++.+||+.||++|||++|+++|
T Consensus 232 ~~~----~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~h 267 (476)
T 2y94_A 232 IFY----TPQYLNPSVISLLKHMLQVDPMKRATIKDIREH 267 (476)
T ss_dssp CCC----CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred CcC----CCccCCHHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence 000 001123467899999999999999999999985
No 135
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=348.47 Aligned_cols=264 Identities=23% Similarity=0.239 Sum_probs=199.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---------cccHHHHHHHHhhcC---CCCEEEEeeeeecCC-
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---------ETNFDVEIRTLSLVR---HRNILRIVGSCTKDE- 900 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---------~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~- 900 (1119)
.+|+..+.||+|+||+||+|++..+++.||||+++.. ...+.+|+.+++.++ ||||+++++++....
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~ 88 (308)
T 3g33_A 9 SRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRT 88 (308)
T ss_dssp -CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCS
T ss_pred cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCC
Confidence 3677789999999999999999999999999998532 235678888887775 999999999997654
Q ss_pred ----ceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEe
Q 001226 901 ----HGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGD 976 (1119)
Q Consensus 901 ----~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~D 976 (1119)
..++||||++ ++|.+++..... ..+++..++.++.|++.|++|||+. +|+||||||+||+++.++.+||+|
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~D 163 (308)
T 3g33_A 89 DREIKVTLVFEHVD-QDLRTYLDKAPP-PGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKLAD 163 (308)
T ss_dssp SSEEEEEEEEECCC-CBHHHHHHTCCT-TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEECS
T ss_pred CCceeEEEEehhhh-cCHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEEee
Confidence 4799999996 699999987653 2489999999999999999999999 999999999999999999999999
Q ss_pred ccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccc
Q 001226 977 FGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQEN 1056 (1119)
Q Consensus 977 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 1056 (1119)
||+++..... .......||+.|+|||.+.+..++.++||||+||++|||++|+.||......+..............
T Consensus 164 fg~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~ 240 (308)
T 3g33_A 164 FGLARIYSYQ---MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPE 240 (308)
T ss_dssp CSCTTTSTTC---CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCT
T ss_pred CccccccCCC---cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCh
Confidence 9999866432 2334567899999999998999999999999999999999999999653211100000000000000
Q ss_pred cccccc---ccccccCCCc-----hHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1057 HECICF---LDREISFWDS-----DDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1057 ~~~~~~---~~~~~~~~~~-----~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...... ....+..... .....+..+.+++.+||+.||++|||++|+++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 297 (308)
T 3g33_A 241 DDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH 297 (308)
T ss_dssp TTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence 000000 0000000000 001224567899999999999999999999986
No 136
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=5.4e-37 Score=340.83 Aligned_cols=247 Identities=22% Similarity=0.359 Sum_probs=201.1
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+|+..+.||+|+||.||+|.+..+++.||+|++.... ..+.+|+.+++.++||||+++++++.+++..++||||
T Consensus 7 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 86 (284)
T 3kk8_A 7 NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDL 86 (284)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEec
Confidence 5667789999999999999999999999999985432 4577899999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCc---eEEEeccccccccC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELE---PKIGDFGMSKLISD 985 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~---vkl~DfGla~~~~~ 985 (1119)
+++++|.+++.... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++. +||+|||.+.....
T Consensus 87 ~~~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 160 (284)
T 3kk8_A 87 VTGGELFEDIVARE---FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 160 (284)
T ss_dssp CCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence 99999999887754 489999999999999999999999 9999999999999987655 99999999986654
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
.. ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||...... .. ..... . .
T Consensus 161 ~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~--~~~~~-~----------~ 222 (284)
T 3kk8_A 161 SE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RL--YAQIK-A----------G 222 (284)
T ss_dssp SC---BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HH--HHHHH-H----------T
T ss_pred Cc---cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh--HH--HHHHH-h----------c
Confidence 22 223457899999999999999999999999999999999999999643110 00 00000 0 0
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
............+..+.+++.+|++.||++|||++|++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 223 AYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp CCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred cccCCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 0000000011223567899999999999999999999985
No 137
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=8.2e-37 Score=339.33 Aligned_cols=254 Identities=25% Similarity=0.367 Sum_probs=208.3
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccccccHHHHHHHHhhcCCCCEEEEeeeeec---------------
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTLSLVRHRNILRIVGSCTK--------------- 898 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--------------- 898 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|+++.....+.+|+++++.++||||+++++++..
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~ 90 (284)
T 2a19_B 11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRS 90 (284)
T ss_dssp HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCSGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CC
T ss_pred cccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccccHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccccccc
Confidence 57888899999999999999999889999999998877889999999999999999999998754
Q ss_pred -CCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEec
Q 001226 899 -DEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDF 977 (1119)
Q Consensus 899 -~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~Df 977 (1119)
....++||||+++++|.+++.... ...+++..+..++.|++.|+.|||+. +|+||||||+||+++.++.+||+||
T Consensus 91 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Df 166 (284)
T 2a19_B 91 KTKCLFIQMEFCDKGTLEQWIEKRR-GEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIGDF 166 (284)
T ss_dssp EEEEEEEEECCCCSCBHHHHHHHGG-GSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCC
T ss_pred CcceEEEEEeccCCCCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCEEECcc
Confidence 345799999999999999997653 23589999999999999999999999 9999999999999999999999999
Q ss_pred cccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccc
Q 001226 978 GMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENH 1057 (1119)
Q Consensus 978 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1119)
|++....... ......+|+.|+|||.+.+..++.++||||+|+++|||++|..|+... . ....
T Consensus 167 g~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~---~~~~------- 229 (284)
T 2a19_B 167 GLVTSLKNDG---KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET----S---KFFT------- 229 (284)
T ss_dssp TTCEESSCCS---CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH----H---HHHH-------
T ss_pred hhheeccccc---cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH----H---HHHH-------
Confidence 9998765432 223456899999999998889999999999999999999999886421 0 0000
Q ss_pred cccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCCC
Q 001226 1058 ECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGGM 1117 (1119)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~~ 1117 (1119)
......+.. ..+..+.+++.+||+.||++|||++|++++++.+.+..+..-
T Consensus 230 ---~~~~~~~~~------~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~~~ 280 (284)
T 2a19_B 230 ---DLRDGIISD------IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEKNE 280 (284)
T ss_dssp ---HHHTTCCCT------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC------
T ss_pred ---Hhhcccccc------cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCccc
Confidence 000011110 123457899999999999999999999999999998877653
No 138
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=3.3e-37 Score=341.51 Aligned_cols=243 Identities=32% Similarity=0.462 Sum_probs=199.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++.+++..++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 88 (279)
T 3fdn_A 9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL 88 (279)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEEE
Confidence 4677889999999999999999999999999998432 345788999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+++++|.+++.... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 89 e~~~~~~l~~~l~~~~---~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~ 162 (279)
T 3fdn_A 89 EYAPLGTVYRELQKLS---KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 162 (279)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred ecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCCcc
Confidence 9999999999998754 389999999999999999999998 9999999999999999999999999998654332
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
......+|+.|+|||.+.+..++.++||||+|+++|||++|+.||...... ..+.. .... ...
T Consensus 163 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~~~~-~~~~--------~~~ 225 (279)
T 3fdn_A 163 ----RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ----ETYKR-ISRV--------EFT 225 (279)
T ss_dssp ---------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH----HHHHH-HHHT--------CCC
T ss_pred ----cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHH----HHHHH-HHhC--------CCC
Confidence 223457899999999999999999999999999999999999998642110 00000 0000 000
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
. +...+..+.+++.+||+.||++|||++|++++
T Consensus 226 ~------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 226 F------PDFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp C------CTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred C------CCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 1 11123467899999999999999999999986
No 139
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=2.4e-37 Score=343.02 Aligned_cols=254 Identities=26% Similarity=0.372 Sum_probs=193.6
Q ss_pred HHhhCCceeeecCCccEEEEEeCCC---ceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNS---RKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~---~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|.+..+ +..||+|+.+.. ...+.+|+..++.++||||+++++++. ++..++|
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~lv 93 (281)
T 1mp8_A 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWII 93 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEEE
Confidence 3677789999999999999998653 467999998643 245778999999999999999999985 4678999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++++|.+++..... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 94 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 168 (281)
T 1mp8_A 94 MELCTLGELRSFLQVRKY--SLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 168 (281)
T ss_dssp EECCTTEEHHHHHHHTTT--TSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred EecCCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccccCc
Confidence 999999999999986542 489999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
... .......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... +... ... ...
T Consensus 169 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~--~~~~---~i~-~~~------- 234 (281)
T 1mp8_A 169 STY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIG---RIE-NGE------- 234 (281)
T ss_dssp -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHH---HHH-TTC-------
T ss_pred ccc-cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH--HHHH---HHH-cCC-------
Confidence 321 22234457789999999988889999999999999999996 99998753211 1110 000 000
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
... .+...+..+.+++.+||+.||++|||++|++++|+++.++
T Consensus 235 -~~~----~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 277 (281)
T 1mp8_A 235 -RLP----MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 277 (281)
T ss_dssp -CCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -CCC----CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 000 0112245678999999999999999999999999998764
No 140
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=7.2e-37 Score=338.48 Aligned_cols=247 Identities=21% Similarity=0.313 Sum_probs=201.8
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccc----ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEecc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR----SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
.+|+..+.||+|+||.||+|.+..++..||+|++.. ....+.+|+.+++.++||||+++++++.+++..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 88 (277)
T 3f3z_A 9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELC 88 (277)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEecc
Confidence 468888999999999999999999999999998853 3356889999999999999999999999999999999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe---CCCCceEEEeccccccccCC
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL---DSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~vkl~DfGla~~~~~~ 986 (1119)
++++|.+++.... .+++..+..++.|++.|++|||+. +|+||||||+||++ +.++.+||+|||++......
T Consensus 89 ~~~~L~~~~~~~~---~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~ 162 (277)
T 3f3z_A 89 TGGELFERVVHKR---VFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPG 162 (277)
T ss_dssp CSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTT
T ss_pred CCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceeccCc
Confidence 9999999988754 389999999999999999999999 99999999999999 78899999999999876542
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
. ......+|+.|+|||.+.+ .++.++||||+|+++|||++|+.||...... . ..... ....
T Consensus 163 ~---~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~--~~~~~-----------~~~~ 223 (277)
T 3f3z_A 163 K---MMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDS--E--VMLKI-----------REGT 223 (277)
T ss_dssp S---CBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--H--HHHHH-----------HHCC
T ss_pred c---chhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHH--H--HHHHH-----------HhCC
Confidence 2 2334578999999998765 4899999999999999999999999643110 0 00000 0000
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...........+..+.+++.+|++.||++|||+.|++++
T Consensus 224 ~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h 262 (277)
T 3f3z_A 224 FTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEH 262 (277)
T ss_dssp CCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred CCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000000001234578899999999999999999999874
No 141
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=2e-37 Score=357.03 Aligned_cols=268 Identities=16% Similarity=0.222 Sum_probs=205.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCC-----ceEEEEEecccccccHHHHHH---------------HHhhcCCCCEEEEee
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNS-----RKHWAVKKLNRSETNFDVEIR---------------TLSLVRHRNILRIVG 894 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~-----~~~vavK~~~~~~~~~~~E~~---------------~l~~l~h~niv~l~~ 894 (1119)
+|+..+.||+|+||.||+|.+..+ ++.||||++......+.+|++ .++.++||||+++++
T Consensus 36 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~ 115 (364)
T 3op5_A 36 AWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWG 115 (364)
T ss_dssp EEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEE
T ss_pred eEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEe
Confidence 577789999999999999998764 578999998665544444444 445567999999999
Q ss_pred eeecC----CceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC--C
Q 001226 895 SCTKD----EHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD--S 968 (1119)
Q Consensus 895 ~~~~~----~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~--~ 968 (1119)
++... ...|+||||+ +++|.+++..... .+++..+..++.||+.||+|||+. +|+||||||+||+++ .
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~--~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~~~ 189 (364)
T 3op5_A 116 SGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAK--RFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNYKN 189 (364)
T ss_dssp EEEEEETTEEEEEEEEECE-EEEHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEESSC
T ss_pred eeeeccCCcceEEEEEeCC-CCCHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEecCC
Confidence 98764 4579999999 9999999987532 589999999999999999999999 999999999999999 8
Q ss_pred CCceEEEeccccccccCCCCC-----CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 001226 969 ELEPKIGDFGMSKLISDSHSS-----STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDT 1043 (1119)
Q Consensus 969 ~~~vkl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 1043 (1119)
++.+||+|||+++........ .......||+.|+|||.+.+..++.++|||||||++|||++|+.||...... .
T Consensus 190 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~-~ 268 (364)
T 3op5_A 190 PDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD-P 268 (364)
T ss_dssp TTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC-H
T ss_pred CCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC-H
Confidence 899999999999876543211 1123456999999999999999999999999999999999999999743211 1
Q ss_pred ceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1044 DIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
........ .........+++.+.. ...+..+.+++..||+.+|++||++++|++.|+++.++.+..
T Consensus 269 ~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~~ 334 (364)
T 3op5_A 269 KYVRDSKI--RYRENIASLMDKCFPA-----ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSK 334 (364)
T ss_dssp HHHHHHHH--HHHHCHHHHHHHHSCT-----TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHH--HhhhhHHHHHHHhccc-----ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 11111110 0111122222222211 112457889999999999999999999999999988765543
No 142
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=4.6e-37 Score=349.81 Aligned_cols=259 Identities=24% Similarity=0.415 Sum_probs=207.6
Q ss_pred HHhhCCceeeecCCccEEEEEeC-------CCceEEEEEeccccc-----ccHHHHHHHHhhc-CCCCEEEEeeeeecCC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSN-------NSRKHWAVKKLNRSE-----TNFDVEIRTLSLV-RHRNILRIVGSCTKDE 900 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~-------~~~~~vavK~~~~~~-----~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 900 (1119)
.+|+..+.||+|+||.||+|.+. .+++.||||+++... ..+.+|+.+++++ +||||+++++++.+++
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 114 (334)
T 2pvf_A 35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG 114 (334)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCC
Confidence 46778899999999999999975 356789999996432 3477899999999 8999999999999999
Q ss_pred ceEEEEeccCCCCHHHhhccCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC
Q 001226 901 HGFIVTEYMPGGTLFNVLHQNEP-------------RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD 967 (1119)
Q Consensus 901 ~~~lV~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~ 967 (1119)
..++||||+++|+|.+++..... ...+++..+..++.|+++|++|||+. +|+||||||+||+++
T Consensus 115 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~ 191 (334)
T 2pvf_A 115 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVT 191 (334)
T ss_dssp CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC
T ss_pred ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEEc
Confidence 99999999999999999987542 12488999999999999999999999 999999999999999
Q ss_pred CCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCcee
Q 001226 968 SELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIV 1046 (1119)
Q Consensus 968 ~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~ 1046 (1119)
.++.+||+|||+++...............+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .
T Consensus 192 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~-- 267 (334)
T 2pvf_A 192 ENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--E-- 267 (334)
T ss_dssp TTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--H--
T ss_pred CCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHH--H--
Confidence 999999999999987655333333344567889999999888889999999999999999999 99998643110 0
Q ss_pred ehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1047 TWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
...... ... ... .+...+..+.+++.+||+.||++|||++|++++|+++.+..
T Consensus 268 -~~~~~~-~~~------~~~------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~ 320 (334)
T 2pvf_A 268 -LFKLLK-EGH------RMD------KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT 320 (334)
T ss_dssp -HHHHHH-HTC------CCC------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHh-cCC------CCC------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence 000000 000 000 01122346789999999999999999999999999987643
No 143
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=1.1e-36 Score=348.04 Aligned_cols=268 Identities=24% Similarity=0.330 Sum_probs=208.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-cccHHHHHHHHhh--cCCCCEEEEeeeeecCC----ceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-ETNFDVEIRTLSL--VRHRNILRIVGSCTKDE----HGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~~~lV~ 906 (1119)
.+|+..+.||+|+||.||+|.+. ++.||||+++.. ...+.+|+++++. ++||||+++++++..+. ..++||
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~ 119 (342)
T 1b6c_B 42 RTIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 119 (342)
T ss_dssp HHCEEEEEEEEETTEEEEEEEET--TEEEEEEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEE
T ss_pred ccEEEEeeecCCCCcEEEEEEEc--CccEEEEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEE
Confidence 47888899999999999999884 799999998643 3456788888887 78999999999998775 789999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEecCCCCCCeEeCCCCceEEEecc
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLH--------YDCVPQIIHRDIKSDNILLDSELEPKIGDFG 978 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfG 978 (1119)
||+++|+|.+++... .+++..++.++.|++.|++||| +. +|+||||||+||+++.++.+||+|||
T Consensus 120 e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg 192 (342)
T 1b6c_B 120 DYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIADLG 192 (342)
T ss_dssp CCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSCEEECCCT
T ss_pred eecCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCCEEEEECC
Confidence 999999999999764 3899999999999999999999 66 99999999999999999999999999
Q ss_pred ccccccCCCCCC--cccccccCCCcccccccCCCC------CCCcchHHHHHHHHHHHHhC----------CCCCCCCCC
Q 001226 979 MSKLISDSHSSS--TRSAIVGSLGYIAPENAYSTR------LTEKSDVYSYGVILFELLFR----------KMPVDPSFG 1040 (1119)
Q Consensus 979 la~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~------~~~~sDvwslG~vl~elltg----------~~p~~~~~~ 1040 (1119)
+++......... ......||+.|+|||.+.+.. ++.++||||+||++|||++| +.||.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~ 272 (342)
T 1b6c_B 193 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP 272 (342)
T ss_dssp TCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC
T ss_pred CceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCc
Confidence 998765432211 234457999999999887652 33689999999999999999 677765433
Q ss_pred CCCceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCCC
Q 001226 1041 EDTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGGM 1117 (1119)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~~ 1117 (1119)
.......+...... ....+.+... .........+.+++.+||+.||++|||++|++++|+++.++...+|
T Consensus 273 ~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~~~~~ 342 (342)
T 1b6c_B 273 SDPSVEEMRKVVCE------QKLRPNIPNR-WQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEGIKM 342 (342)
T ss_dssp SSCCHHHHHHHHTT------SCCCCCCCGG-GGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTTC---
T ss_pred CcccHHHHHHHHHH------HHhCCCCccc-ccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHhcCCC
Confidence 22222221111110 0111111100 0123456688999999999999999999999999999998876554
No 144
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.4e-37 Score=345.05 Aligned_cols=260 Identities=18% Similarity=0.212 Sum_probs=198.7
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
+.+|...+.||+|+||.||+|.+..+++.||+|+++... ..+.+|+.+++.++||||+++++++.+++..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 456788899999999999999999999999999986431 4577899999999999999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++++|.+++.... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 113 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 186 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQG---PLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTD 186 (309)
T ss_dssp EECCCCEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC------
T ss_pred EEecCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCccccc
Confidence 99999999999998754 489999999999999999999999 999999999999999999999999999986654
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
.. ........+++.|+|||.+.+..++.++||||+|+++|||++|+.||..... . .... ...........
T Consensus 187 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~--~~~~-~~~~~~~~~~~--- 256 (309)
T 2h34_A 187 EK-LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQL---S--VMGA-HINQAIPRPST--- 256 (309)
T ss_dssp -----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHH---H--HHHH-HHHSCCCCGGG---
T ss_pred cc-cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchH---H--HHHH-HhccCCCCccc---
Confidence 22 1223345789999999999999999999999999999999999999864311 0 0000 00000000000
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCC-CHHHHHHHHHcccccCCC
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRP-SMREVVGFLIKLNDKNEG 1115 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-s~~ell~~L~~~~~~~~~ 1115 (1119)
.....+..+.+++.+||+.||++|| +++++++.|+++......
T Consensus 257 -------~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~~ 300 (309)
T 2h34_A 257 -------VRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATADQ 300 (309)
T ss_dssp -------TSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC----
T ss_pred -------cCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 0111234678999999999999999 999999999988776543
No 145
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=2.5e-37 Score=349.26 Aligned_cols=265 Identities=23% Similarity=0.305 Sum_probs=195.3
Q ss_pred HhhC-CceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEEEec
Q 001226 835 RATE-GRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~-~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+|+. ++.||+|+||.||+|.+..+++.||||+++.. ...+.+|+.+++++ +||||+++++++.+++..|+||||
T Consensus 13 ~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~ 92 (316)
T 2ac3_A 13 VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEK 92 (316)
T ss_dssp SCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred eEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEc
Confidence 3444 37899999999999999999999999998543 34578899999885 799999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCc---eEEEeccccccccC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELE---PKIGDFGMSKLISD 985 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~---vkl~DfGla~~~~~ 985 (1119)
+++++|.+++.... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++. +||+|||++.....
T Consensus 93 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 166 (316)
T 2ac3_A 93 MRGGSILSHIHKRR---HFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKL 166 (316)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----
T ss_pred CCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCcccccc
Confidence 99999999998754 489999999999999999999999 9999999999999998876 99999999876542
Q ss_pred CCC-----CCcccccccCCCcccccccCC-----CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcc
Q 001226 986 SHS-----SSTRSAIVGSLGYIAPENAYS-----TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 986 ~~~-----~~~~~~~~gt~~y~aPE~~~~-----~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
... ........||+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+.............
T Consensus 167 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 246 (316)
T 2ac3_A 167 NGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQ 246 (316)
T ss_dssp ---------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHH
T ss_pred CCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHH
Confidence 211 112223468999999998764 4578999999999999999999999976533221110000000000
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1056 NHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
......+...............+..+.+++.+||+.||++|||++|++++
T Consensus 247 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 296 (316)
T 2ac3_A 247 NMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH 296 (316)
T ss_dssp HHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence 00000001111111000011234578899999999999999999999986
No 146
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=6.1e-37 Score=347.19 Aligned_cols=245 Identities=23% Similarity=0.338 Sum_probs=193.5
Q ss_pred HHhhCCceeeecCCccEEEEEeC---CCceEEEEEecccc--------cccHHHHHHHHhhcCCCCEEEEeeeeecCCce
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSN---NSRKHWAVKKLNRS--------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHG 902 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~---~~~~~vavK~~~~~--------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 902 (1119)
.+|+..+.||+|+||.||+|++. .+++.||+|++++. ...+.+|+.+++.++||||+++++++.+++..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 96 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL 96 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence 46777899999999999999985 57899999998642 23467899999999999999999999999999
Q ss_pred EEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccc
Q 001226 903 FIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKL 982 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~ 982 (1119)
|+||||+++++|.+++...+ .+++..+..++.||+.|+.|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 97 ~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~ 170 (327)
T 3a62_A 97 YLILEYLSGGELFMQLEREG---IFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKE 170 (327)
T ss_dssp EEEEECCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC--
T ss_pred EEEEeCCCCCcHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCcccc
Confidence 99999999999999998754 488999999999999999999999 999999999999999999999999999875
Q ss_pred ccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 983 ISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 983 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
..... .......||+.|+|||.+.+..++.++||||+||++|||++|+.||...... . .....
T Consensus 171 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--~---~~~~i---------- 233 (327)
T 3a62_A 171 SIHDG--TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRK--K---TIDKI---------- 233 (327)
T ss_dssp ----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--H---HHHHH----------
T ss_pred cccCC--ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHH--H---HHHHH----------
Confidence 43221 1233457899999999999889999999999999999999999999643110 0 00000
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHH
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADMRP-----SMREVVGF 1105 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~ell~~ 1105 (1119)
....... +...+..+.+++.+||+.||++|| +++|+++|
T Consensus 234 ~~~~~~~----p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h 277 (327)
T 3a62_A 234 LKCKLNL----PPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAH 277 (327)
T ss_dssp HHTCCCC----CTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred HhCCCCC----CCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence 0001110 111235678999999999999999 78888875
No 147
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=2.1e-36 Score=338.19 Aligned_cols=264 Identities=18% Similarity=0.243 Sum_probs=208.5
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc--ccccHHHHHHHHhhcCCCCEEEEeeee-ecCCceEEEEeccCC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR--SETNFDVEIRTLSLVRHRNILRIVGSC-TKDEHGFIVTEYMPG 911 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lV~e~~~~ 911 (1119)
+|+..+.||+|+||.||+|++..+++.||||++.. ....+.+|+.+++.++|+++++.+.++ .+++..++||||+ +
T Consensus 10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~ 88 (296)
T 3uzp_A 10 RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-G 88 (296)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-C
T ss_pred EEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec-C
Confidence 56777999999999999999999999999998743 345789999999999988866666655 5567789999999 9
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC---CCCceEEEeccccccccCCCC
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD---SELEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~---~~~~vkl~DfGla~~~~~~~~ 988 (1119)
++|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++ .++.+||+|||+++.......
T Consensus 89 ~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~ 163 (296)
T 3uzp_A 89 PSLEDLFNFCSR--KFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDART 163 (296)
T ss_dssp CBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTT
T ss_pred CCHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccc
Confidence 999999985443 489999999999999999999999 999999999999995 788999999999987655332
Q ss_pred C-----CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 989 S-----STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 989 ~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
. .......||+.|+|||.+.+..++.++||||+||++|||++|+.||.......... .+.....
T Consensus 164 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~~~~~~~---------- 232 (296)
T 3uzp_A 164 HQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQ-KYERISE---------- 232 (296)
T ss_dssp CCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSS-HHHHHHH----------
T ss_pred ccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhh-hhhhhcc----------
Confidence 1 12345679999999999999999999999999999999999999997643221111 0100000
Q ss_pred cccccCCC-chHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1064 DREISFWD-SDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1064 ~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
....... ......+..+.+++.+||+.||++|||++++++.|+++..+.+..
T Consensus 233 -~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~ 285 (296)
T 3uzp_A 233 -KKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFS 285 (296)
T ss_dssp -HHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred -cccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCCc
Confidence 0000000 000112356889999999999999999999999999998876553
No 148
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=358.04 Aligned_cols=320 Identities=18% Similarity=0.146 Sum_probs=196.5
Q ss_pred cEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCC
Q 001226 267 EVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNN 346 (1119)
Q Consensus 267 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 346 (1119)
+.++.++++++ .+|..+. ++++.|+|++|+++++.+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46777888877 4565543 57788888888888777777777888888888888777776777777777777777777
Q ss_pred cccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeecccccccCCc
Q 001226 347 RLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPP 426 (1119)
Q Consensus 347 ~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 426 (1119)
+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 77765555677777777777777777766666777777777777777777666666666666666666666666654444
Q ss_pred cccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCcccccccc
Q 001226 427 DITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSS 506 (1119)
Q Consensus 427 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~ 506 (1119)
.+..+++|+.|+|++|.+++ ..+..+..+++|+.|++++|.+.+.+|..+....+
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~-------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINA-------------------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCE-------------------------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred HhcccCCCcEEeCCCCcCcE-------------------------eChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 55566666666666655542 23333344444455555554444444444444445
Q ss_pred ccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEccc
Q 001226 507 LRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSA 586 (1119)
Q Consensus 507 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 586 (1119)
|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 55555555555543333444445555555555554444444445555555555555555554555555555555555555
Q ss_pred CcccCcCCcccccCCCCcEEeccCcccc
Q 001226 587 NKLDGRIPYELGKCTKMIKLDLSDNYLA 614 (1119)
Q Consensus 587 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 614 (1119)
|++++..+..|..+++|+.|+|++|+++
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 5555433344455555555555555554
No 149
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=3.2e-37 Score=340.83 Aligned_cols=242 Identities=25% Similarity=0.366 Sum_probs=179.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
+|+..+.||+|+||.||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 14 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 93 (275)
T 2eue_A 14 NYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIE 93 (275)
T ss_dssp CBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred ceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEeh
Confidence 577789999999999999999999999999998532 2357789999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|+ ++++.+++.... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++.......
T Consensus 94 ~~-~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 166 (275)
T 2eue_A 94 YA-GNELFDYIVQRD---KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN 166 (275)
T ss_dssp CC-CEEHHHHHHTSS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCSSCC-------
T ss_pred hc-CCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeecccceeccCcc
Confidence 99 778888887654 489999999999999999999999 99999999999999999999999999998664422
Q ss_pred CCCcccccccCCCcccccccCCCCC-CCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAYSTRL-TEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
......||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||..... .......... .
T Consensus 167 ---~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~~~~----------~ 228 (275)
T 2eue_A 167 ---FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI-----PVLFKNISNG----------V 228 (275)
T ss_dssp -----------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHT----------C
T ss_pred ---cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHHhC----------C
Confidence 2234568999999999887765 7899999999999999999999964311 0000000000 0
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.. .+...+..+.+++.+||+.||++|||++|++++
T Consensus 229 ~~----~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 263 (275)
T 2eue_A 229 YT----LPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp CC----CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred CC----CCccCCHHHHHHHHHHhhcCHhHCCCHHHHhhC
Confidence 00 011123467899999999999999999999875
No 150
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=6.9e-37 Score=348.85 Aligned_cols=277 Identities=24% Similarity=0.338 Sum_probs=201.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-ccHHHHHHH--HhhcCCCCEEEEeeeee-----cCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-TNFDVEIRT--LSLVRHRNILRIVGSCT-----KDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~E~~~--l~~l~h~niv~l~~~~~-----~~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|.+ +++.||||+++... ..+..|..+ +..++||||+++++++. .....++|
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv 90 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLV 90 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEE
T ss_pred HHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEE
Confidence 4677789999999999999976 47999999986433 334444444 44589999999998543 23456899
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC------CCCeEecCCCCCCeEeCCCCceEEEeccc
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDC------VPQIIHRDIKSDNILLDSELEPKIGDFGM 979 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------~~~ivH~Dlkp~Nill~~~~~vkl~DfGl 979 (1119)
|||+++|+|.+++.... .++..+..++.|+++|++|||+.+ .++|+||||||+||+++.++.+||+|||+
T Consensus 91 ~e~~~~g~L~~~l~~~~----~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~ 166 (336)
T 3g2f_A 91 MEYYPNGSLXKYLSLHT----SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGL 166 (336)
T ss_dssp ECCCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTT
T ss_pred EecCCCCcHHHHHhhcc----cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccc
Confidence 99999999999997654 588999999999999999999873 33899999999999999999999999999
Q ss_pred cccccCCCC------CCcccccccCCCcccccccCC-------CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCcee
Q 001226 980 SKLISDSHS------SSTRSAIVGSLGYIAPENAYS-------TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIV 1046 (1119)
Q Consensus 980 a~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 1046 (1119)
++....... ........||+.|+|||.+.+ ..++.++||||+||++|||++|+.||...........
T Consensus 167 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~ 246 (336)
T 3g2f_A 167 SMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQM 246 (336)
T ss_dssp CEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCC
T ss_pred eeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHH
Confidence 987654221 122234579999999998876 3566789999999999999999888765432221111
Q ss_pred ehhhhhhccc--ccc-----cccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1047 TWTRWKLQEN--HEC-----ICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1047 ~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
.+........ ... .....+.+..........+..+.+++.+||+.||++|||++|+++.|+++...++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~ 323 (336)
T 3g2f_A 247 AFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERN 323 (336)
T ss_dssp TTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC-
T ss_pred hhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhc
Confidence 1110000000 000 000111111111223345667999999999999999999999999999998887754
No 151
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=338.11 Aligned_cols=242 Identities=19% Similarity=0.245 Sum_probs=191.5
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..++||+|+||+||+|.+..+++.||||++.... .....|+..+..+ +||||+++++++.+++..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 57888899999999999999999999999999875422 2233455555444 8999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+ +++|.+++...+. .+++..++.++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 137 e~~-~~~L~~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~ 210 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAWGA--SLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA 210 (311)
T ss_dssp ECC-CCBHHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC--
T ss_pred ecc-CCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeecccC
Confidence 999 7799998877643 589999999999999999999999 9999999999999999999999999999876442
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
. ......||+.|+|||++.+ .++.++||||+||++|||++|..|+... . .+..... . ...+.
T Consensus 211 ~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~----~---~~~~~~~---~----~~~~~ 272 (311)
T 3p1a_A 211 G---AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG----E---GWQQLRQ---G----YLPPE 272 (311)
T ss_dssp -------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH----H---HHHHHTT---T----CCCHH
T ss_pred C---CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc----c---HHHHHhc---c----CCCcc
Confidence 2 2334568999999998775 7899999999999999999997765421 0 0111000 0 00000
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.....+..+.+++.+||+.||++|||++|++++
T Consensus 273 ------~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 305 (311)
T 3p1a_A 273 ------FTAGLSSELRSVLVMMLEPDPKLRATAEALLAL 305 (311)
T ss_dssp ------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred ------cccCCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence 111234578899999999999999999999874
No 152
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=3.2e-37 Score=349.36 Aligned_cols=259 Identities=24% Similarity=0.396 Sum_probs=208.8
Q ss_pred HHhhCCceeeecCCccEEEEEeC-----CCceEEEEEeccccc-----ccHHHHHHHHhhcCCCCEEEEeeeeecCCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSN-----NSRKHWAVKKLNRSE-----TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~-----~~~~~vavK~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 903 (1119)
.+|+..+.||+|+||.||+|.+. .+++.||+|++.... ..+.+|+.+++.++||||+++++++.+++..+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 104 (322)
T 1p4o_A 25 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTL 104 (322)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCE
T ss_pred hheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCccE
Confidence 46788899999999999999876 357889999986432 34778999999999999999999999999999
Q ss_pred EEEeccCCCCHHHhhccCCC-------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEe
Q 001226 904 IVTEYMPGGTLFNVLHQNEP-------RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGD 976 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~D 976 (1119)
+||||+++|+|.+++..... ...+++..+..++.|++.|+.|||+. +|+||||||+||+++.++.+||+|
T Consensus 105 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~~~~kl~D 181 (322)
T 1p4o_A 105 VIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGD 181 (322)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEECC
T ss_pred EEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCCCeEEECc
Confidence 99999999999999976321 13478999999999999999999999 999999999999999999999999
Q ss_pred ccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcc
Q 001226 977 FGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 977 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
||+++...............+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .......
T Consensus 182 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-----~~~~~~~-- 254 (322)
T 1p4o_A 182 FGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNE-----QVLRFVM-- 254 (322)
T ss_dssp TTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHH-----HHHHHHH--
T ss_pred CccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHH-----HHHHHHH--
Confidence 999987654333333344567889999999988889999999999999999999 88888643110 0000000
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1056 NHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
..... ..+...+..+.+++.+||+.||++|||++|++++|++....+
T Consensus 255 --------~~~~~---~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~ 301 (322)
T 1p4o_A 255 --------EGGLL---DKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 301 (322)
T ss_dssp --------TTCCC---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTT
T ss_pred --------cCCcC---CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccC
Confidence 00000 001122456789999999999999999999999999876543
No 153
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=2.8e-37 Score=343.94 Aligned_cols=256 Identities=32% Similarity=0.481 Sum_probs=190.3
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+|+..+.||+|+||+||+|.+.. .||+|+++... ..+.+|+.+++.++||||+++++++ .....++||||
T Consensus 25 ~y~~~~~lG~G~~g~Vy~~~~~~---~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~ 100 (289)
T 3og7_A 25 QITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQW 100 (289)
T ss_dssp SCEEEEEEEECSSEEEEEEESSS---EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEEC
T ss_pred ceeeeeEecCCCCeEEEEEEEcC---ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEe
Confidence 56777999999999999998754 49999885322 4578899999999999999999965 45668999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~ 988 (1119)
+++++|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 101 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 175 (289)
T 3og7_A 101 CEGSSLYHHLHASET--KFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175 (289)
T ss_dssp CCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred cCCCcHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccccc
Confidence 999999999976543 489999999999999999999999 999999999999999999999999999986654333
Q ss_pred CCcccccccCCCcccccccC---CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 989 SSTRSAIVGSLGYIAPENAY---STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 989 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
........||+.|+|||.+. +..++.++||||+|+++|||++|+.||......+. ........ . ...
T Consensus 176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~----~~~~~~~~--~----~~~ 245 (289)
T 3og7_A 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ----IIEMVGRG--S----LSP 245 (289)
T ss_dssp --------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHH----HHHHHHHT--S----CCC
T ss_pred cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHH----HHHHhccc--c----cCc
Confidence 33344567899999999876 56788899999999999999999999965321111 00000000 0 001
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
.... .....+..+.+++.+||+.+|++|||++++++.|+++.++
T Consensus 246 ~~~~---~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~e 289 (289)
T 3og7_A 246 DLSK---VRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELARE 289 (289)
T ss_dssp CTTS---SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTCC
T ss_pred chhh---ccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhhC
Confidence 1100 0112245788999999999999999999999999998753
No 154
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=349.38 Aligned_cols=254 Identities=24% Similarity=0.400 Sum_probs=196.5
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEE----EEEeccc-----ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHW----AVKKLNR-----SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~v----avK~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
+|+..++||+|+||.||+|.+..+++.| |+|.+.. ....+.+|+.+++.++||||+++++++..+. .++|
T Consensus 16 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~v 94 (327)
T 3lzb_A 16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLI 94 (327)
T ss_dssp TEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEEE
T ss_pred HceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceEE
Confidence 5677799999999999999988777654 6666632 2346788999999999999999999998754 7899
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
+||+++|+|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 95 ~~~~~~g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~ 169 (327)
T 3lzb_A 95 TQLMPFGCLLDYVREHKD--NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp ECCCSSCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC------
T ss_pred EEecCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEccC
Confidence 999999999999987643 489999999999999999999999 999999999999999999999999999987755
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
...........+|+.|+|||.+.+..++.++||||+||++|||++ |+.||....... ..... .
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~--------------~ 233 (327)
T 3lzb_A 170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISSIL--------------E 233 (327)
T ss_dssp ----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHH--------------H
T ss_pred ccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHHHH--------------H
Confidence 443334444567889999999999999999999999999999999 999997532111 11000 0
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
..... ..+...+..+.+++.+||+.||++||+++|+++.|+++...
T Consensus 234 ~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 234 KGERL--PQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp TTCCC--CCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred cCCCC--CCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 00000 00111234678999999999999999999999999988754
No 155
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=5.3e-37 Score=346.35 Aligned_cols=265 Identities=22% Similarity=0.279 Sum_probs=189.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
.+|+..+.||+|+||.||+|.++.+++.||+|+++.. ...+.+|+.+++.++||||+++++++.+++..++||||
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 84 (317)
T 2pmi_A 5 SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEF 84 (317)
T ss_dssp --------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEEC
T ss_pred cceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEe
Confidence 4667778999999999999999999999999988532 24578899999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCC---CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 909 MPGGTLFNVLHQNE---PRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
++ |+|.+++.... ....+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 85 ~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 160 (317)
T 2pmi_A 85 MD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFGI 160 (317)
T ss_dssp CC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEETTS
T ss_pred cC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccceecCC
Confidence 97 69999987542 123588999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCCCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccc----cc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHE----CI 1060 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~ 1060 (1119)
.. .......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+. .............. ..
T Consensus 161 ~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 237 (317)
T 2pmi_A 161 PV--NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQ-LKLIFDIMGTPNESLWPSVT 237 (317)
T ss_dssp CC--CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCSCCTTTCGGGG
T ss_pred Cc--ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHhCCCChhHhhhhh
Confidence 21 22334578999999998876 4689999999999999999999999975321100 00000000000000 00
Q ss_pred --ccccccccCCCc----------hHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1061 --CFLDREISFWDS----------DDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1061 --~~~~~~~~~~~~----------~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
....+.+..... .....+.++.+++.+||+.||++|||++|++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h 294 (317)
T 2pmi_A 238 KLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH 294 (317)
T ss_dssp GCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred hhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence 000000000000 000123468899999999999999999999986
No 156
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=3.7e-37 Score=342.80 Aligned_cols=261 Identities=21% Similarity=0.283 Sum_probs=194.8
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+|+..+.||+|+||+||+|.+ .+++.||+|+++.. ...+.+|+.+++.++||||+++++++.+++..++||||
T Consensus 3 ~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 3 KYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp SEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred cchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 567778999999999999998 56899999988532 24577899999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~ 988 (1119)
+++ +|.+++..... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~-~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 154 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCEG--GLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPV- 154 (288)
T ss_dssp CSE-EHHHHHHTSTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred cCC-CHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCccc-
Confidence 975 89999876543 488999999999999999999999 99999999999999999999999999998664321
Q ss_pred CCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhh-hhcccccc-----cc
Q 001226 989 SSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRW-KLQENHEC-----IC 1061 (1119)
Q Consensus 989 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~ 1061 (1119)
.......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+. ....... ........ ..
T Consensus 155 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 232 (288)
T 1ob3_A 155 -RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQ-LMRIFRILGTPNSKNWPNVTELP 232 (288)
T ss_dssp --------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCCCTTTSTTGGGST
T ss_pred -cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHHCCCChhhchhhhccc
Confidence 22234578999999998875 4589999999999999999999999975321100 0000000 00000000 00
Q ss_pred cccccccCC-----CchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1062 FLDREISFW-----DSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1062 ~~~~~~~~~-----~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..++..... .......+..+.+++.+||+.||++|||++|++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 281 (288)
T 1ob3_A 233 KYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH 281 (288)
T ss_dssp TCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 001111000 00011234567899999999999999999999875
No 157
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.5e-37 Score=356.90 Aligned_cols=250 Identities=20% Similarity=0.257 Sum_probs=200.1
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc-------ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR-------SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~-------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
+|+..++||+|+||.||+|+++.+++.||||++++ ....+.+|..++..++||||+++++++.+++..|+|||
T Consensus 62 ~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE 141 (412)
T 2vd5_A 62 DFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVME 141 (412)
T ss_dssp GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEEC
T ss_pred hEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEc
Confidence 56667899999999999999999999999999853 23458899999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|+++|+|.+++...+. .+++..++.++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 142 ~~~gg~L~~~l~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~ 216 (412)
T 2vd5_A 142 YYVGGDLLTLLSKFGE--RIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADG 216 (412)
T ss_dssp CCCSCBHHHHHHHHSS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS
T ss_pred CCCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeechhheeccCCC
Confidence 9999999999987542 489999999999999999999999 99999999999999999999999999998765422
Q ss_pred CCCcccccccCCCcccccccC-------CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAY-------STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECI 1060 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1119)
.......+||+.|+|||++. ...++.++||||+||++|||++|+.||...... ..+... ....
T Consensus 217 -~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~----~~~~~i-~~~~---- 286 (412)
T 2vd5_A 217 -TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA----ETYGKI-VHYK---- 286 (412)
T ss_dssp -CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH----HHHHHH-HTHH----
T ss_pred -ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHH----HHHHHH-Hhcc----
Confidence 11223457999999999876 457899999999999999999999999643110 000000 0000
Q ss_pred ccccccccCCCchHHHHHHHHHHHHHHccccCCCCC---CCHHHHHHH
Q 001226 1061 CFLDREISFWDSDDQLKALRLLELALECTRQVADMR---PSMREVVGF 1105 (1119)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R---Ps~~ell~~ 1105 (1119)
.... ........+.++.+++.+||+ +|++| |+++|+++|
T Consensus 287 ----~~~~-~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H 328 (412)
T 2vd5_A 287 ----EHLS-LPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH 328 (412)
T ss_dssp ----HHCC-CC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred ----cCcC-CCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence 0000 000011234577899999999 99998 699999876
No 158
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.7e-36 Score=358.54 Aligned_cols=322 Identities=20% Similarity=0.166 Sum_probs=275.6
Q ss_pred cEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccc
Q 001226 242 VEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSR 321 (1119)
Q Consensus 242 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 321 (1119)
+.++.++++++ .++... .+++++|+|++|++++..|..|.++++|++|+|++|.++++.+..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 56788888876 344322 25799999999999998899999999999999999999999999999999999999999
Q ss_pred cccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCC
Q 001226 322 NNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIP 401 (1119)
Q Consensus 322 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 401 (1119)
|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|.+++..+..|.++++|+.|+|++|++++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 99997777789999999999999999998889999999999999999999998889999999999999999999998888
Q ss_pred ccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCcccccc
Q 001226 402 HQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGT 481 (1119)
Q Consensus 402 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 481 (1119)
..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+.+.++...+ ...
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------------------~~~ 224 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-------------------------YGL 224 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-------------------------TTC
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-------------------------cCc
Confidence 8899999999999999999988888899999999999999887655544332 233
Q ss_pred ccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEecc
Q 001226 482 NLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFS 561 (1119)
Q Consensus 482 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls 561 (1119)
+|+.|++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|+
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 56666666666664433567777888888888888887777778888888888888888887778888888888999999
Q ss_pred CCcccCCCCCccCCcccccEEEcccCcccCc
Q 001226 562 ENRLSGSIPSELGNLENLQILRLSANKLDGR 592 (1119)
Q Consensus 562 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 592 (1119)
+|+|++..+..|.++++|+.|+|++|.+...
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 9988877777788888999999999988743
No 159
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=5e-37 Score=338.59 Aligned_cols=248 Identities=29% Similarity=0.460 Sum_probs=190.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc--------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS--------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
+|+..+.||+|+||.||+|.+. ++.||||+++.. ...+.+|+.+++.++||||+++++++.+++..++||
T Consensus 8 ~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 8 ELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp SEEEEEEEEEETTEEEEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred heeeeeeeccCCCeEEEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 5667789999999999999975 789999998532 245778999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC--------CCceEEEecc
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS--------ELEPKIGDFG 978 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~--------~~~vkl~DfG 978 (1119)
||+++++|.+++... .+++..+..++.|+++|++|||+....+|+||||||+||+++. ++.+|++|||
T Consensus 86 e~~~~~~L~~~~~~~----~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg 161 (271)
T 3dtc_A 86 EFARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFG 161 (271)
T ss_dssp ECCTTEEHHHHHTSS----CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCC
T ss_pred EcCCCCCHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCC
Confidence 999999999998643 4899999999999999999999992122999999999999986 6789999999
Q ss_pred ccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccc
Q 001226 979 MSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHE 1058 (1119)
Q Consensus 979 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1119)
.++...... .....||+.|+|||.+.+..++.++||||+|+++|||++|+.||....... ..... .
T Consensus 162 ~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~---~~~~~-~------ 227 (271)
T 3dtc_A 162 LAREWHRTT----KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLA---VAYGV-A------ 227 (271)
T ss_dssp C-----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHH---HHHHH-H------
T ss_pred ccccccccc----ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHhh-h------
Confidence 998654322 224568999999999988889999999999999999999999996431110 00000 0
Q ss_pred ccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcc
Q 001226 1059 CICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKL 1109 (1119)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~ 1109 (1119)
...... ..+...+..+.+++.+||+.||++|||++|++++|+++
T Consensus 228 -----~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 228 -----MNKLAL--PIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp -----TSCCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred -----cCCCCC--CCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 000000 00112235688999999999999999999999999874
No 160
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=6.3e-37 Score=353.18 Aligned_cols=253 Identities=16% Similarity=0.177 Sum_probs=205.2
Q ss_pred HhhCCceeeecCCccEEEEE-----eCCCceEEEEEecccc-cccHHHHHHHHhhcC---CCCEEEEeeeeecCCceEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTL-----SNNSRKHWAVKKLNRS-ETNFDVEIRTLSLVR---HRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~-----~~~~~~~vavK~~~~~-~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lV 905 (1119)
+|+..++||+|+||+||+|. +..+++.||||+++.. ..++.+|+.++++++ |+||+++++++..++..|+|
T Consensus 66 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv 145 (365)
T 3e7e_A 66 LVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLV 145 (365)
T ss_dssp EEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEE
T ss_pred EEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEE
Confidence 46667899999999999994 5667899999999653 456788999988887 99999999999999999999
Q ss_pred EeccCCCCHHHhhccCC--CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC-----------CCce
Q 001226 906 TEYMPGGTLFNVLHQNE--PRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS-----------ELEP 972 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~-----------~~~v 972 (1119)
|||+++|+|.+++.... ....+++..+..++.||++||+|||+. +||||||||+||+++. ++.+
T Consensus 146 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~ 222 (365)
T 3e7e_A 146 GELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDDLSAGL 222 (365)
T ss_dssp ECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC------CTTE
T ss_pred EeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCccccccccCCE
Confidence 99999999999997532 133599999999999999999999998 9999999999999998 8999
Q ss_pred EEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhh
Q 001226 973 KIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWK 1052 (1119)
Q Consensus 973 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 1052 (1119)
||+|||+|+...............||+.|+|||++.+..++.++||||+||++|||++|+.||.........
T Consensus 223 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~-------- 294 (365)
T 3e7e_A 223 ALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECK-------- 294 (365)
T ss_dssp EECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEE--------
T ss_pred EEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCcee--------
Confidence 999999998665333334445567999999999999999999999999999999999999998542111000
Q ss_pred hcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCC-CCHHHHHHHHHcccccC
Q 001226 1053 LQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMR-PSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R-Ps~~ell~~L~~~~~~~ 1113 (1119)
....+... .....+.+++..|++.+|.+| |+++++.+.|+++.++.
T Consensus 295 ----------~~~~~~~~-----~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~ 341 (365)
T 3e7e_A 295 ----------PEGLFRRL-----PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQH 341 (365)
T ss_dssp ----------ECSCCTTC-----SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHH
T ss_pred ----------echhcccc-----CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 01111111 113456789999999999988 68899999998877654
No 161
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=2.8e-37 Score=348.88 Aligned_cols=261 Identities=25% Similarity=0.391 Sum_probs=208.7
Q ss_pred HHhhCCceeeecCCccEEEEEe-----CCCceEEEEEeccccc-----ccHHHHHHHHhhc-CCCCEEEEeeeeecCC-c
Q 001226 834 IRATEGRIIGKGKHGTVYRTLS-----NNSRKHWAVKKLNRSE-----TNFDVEIRTLSLV-RHRNILRIVGSCTKDE-H 901 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~-----~~~~~~vavK~~~~~~-----~~~~~E~~~l~~l-~h~niv~l~~~~~~~~-~ 901 (1119)
.+|+..+.||+|+||.||+|.+ ..+++.||||+++... ..+.+|+.+++.+ +||||+++++++...+ .
T Consensus 27 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~ 106 (316)
T 2xir_A 27 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP 106 (316)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSC
T ss_pred hheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCc
Confidence 3677789999999999999984 4567899999986532 3477899999999 7999999999987654 5
Q ss_pred eEEEEeccCCCCHHHhhccCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC
Q 001226 902 GFIVTEYMPGGTLFNVLHQNEP-------------RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS 968 (1119)
Q Consensus 902 ~~lV~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~ 968 (1119)
.++||||+++++|.+++..... ...+++..+..++.|+++|+.|||+. +|+||||||+||+++.
T Consensus 107 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~ 183 (316)
T 2xir_A 107 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSE 183 (316)
T ss_dssp CEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECG
T ss_pred eEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECC
Confidence 8999999999999999987543 12378999999999999999999999 9999999999999999
Q ss_pred CCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceee
Q 001226 969 ELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVT 1047 (1119)
Q Consensus 969 ~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 1047 (1119)
++.+||+|||+++...............+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||........ .
T Consensus 184 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~-~-- 260 (316)
T 2xir_A 184 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-F-- 260 (316)
T ss_dssp GGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH-H--
T ss_pred CCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHH-H--
Confidence 99999999999987655433334445678899999999988899999999999999999998 9999865321111 0
Q ss_pred hhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1048 WTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
........ ..... ...+..+.+++.+||+.||++|||++|++++|+++.++..
T Consensus 261 ~~~~~~~~--------~~~~~------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 313 (316)
T 2xir_A 261 CRRLKEGT--------RMRAP------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 313 (316)
T ss_dssp HHHHHHTC--------CCCCC------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHhccCc--------cCCCC------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 00000000 00000 1123467899999999999999999999999999887654
No 162
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=1.1e-36 Score=338.12 Aligned_cols=256 Identities=22% Similarity=0.315 Sum_probs=204.3
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 903 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+.+++.++||||+++++++.++...+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 3678889999999999999999999999999988532 345889999999999999999999999999999
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC----ceEEEeccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL----EPKIGDFGM 979 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~----~vkl~DfGl 979 (1119)
+||||+++++|.+++.... .+++..+..++.|++.|+.|||+. +++||||||+||+++.++ .+||+|||.
T Consensus 85 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~ 158 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEKE---SLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGI 158 (283)
T ss_dssp EEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEeecCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence 9999999999999997654 489999999999999999999999 999999999999999877 899999999
Q ss_pred cccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccc
Q 001226 980 SKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHEC 1059 (1119)
Q Consensus 980 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1119)
+....... ......+++.|+|||.+.+..++.++||||+|+++|||++|+.||...... ........
T Consensus 159 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~~~~~~~------ 225 (283)
T 3bhy_A 159 AHKIEAGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQ----ETLTNISA------ 225 (283)
T ss_dssp CEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH----HHHHHHHT------
T ss_pred ceeccCCC---cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH----HHHHHhHh------
Confidence 98764422 223456899999999999899999999999999999999999998643110 00000000
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH--HHcccccC
Q 001226 1060 ICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF--LIKLNDKN 1113 (1119)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~--L~~~~~~~ 1113 (1119)
.............+..+.+++.+||+.||++|||++|++++ ++.++.+.
T Consensus 226 -----~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~~ 276 (283)
T 3bhy_A 226 -----VNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRRN 276 (283)
T ss_dssp -----TCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHHCC
T ss_pred -----cccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHHHh
Confidence 00000000011224567899999999999999999999984 55555443
No 163
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=6.3e-37 Score=366.00 Aligned_cols=249 Identities=25% Similarity=0.307 Sum_probs=203.9
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc-------ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR-------SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~-------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
+|...++||+|+||.||+|.++.+++.||+|++.. ....+.+|+.+++.++||||+++++++.+.+..|+|||
T Consensus 185 ~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE 264 (576)
T 2acx_A 185 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT 264 (576)
T ss_dssp GEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEE
Confidence 46667899999999999999999999999999843 22447789999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|++||+|.+++.... ...+++..++.++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 265 y~~gg~L~~~l~~~~-~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~ 340 (576)
T 2acx_A 265 LMNGGDLKFHIYHMG-QAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ 340 (576)
T ss_dssp CCCSCBHHHHHHSSS-SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred cCCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceecccCc
Confidence 999999999998654 23489999999999999999999999 99999999999999999999999999998765422
Q ss_pred CCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREI 1067 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1119)
......||+.|+|||++.+..++.++||||+||++|||++|+.||......... ........... ..+
T Consensus 341 ---~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~-~~i~~~i~~~~--------~~~ 408 (576)
T 2acx_A 341 ---TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKR-EEVERLVKEVP--------EEY 408 (576)
T ss_dssp ---CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCH-HHHHHHHHHCC--------CCC
T ss_pred ---cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhH-HHHHHHhhccc--------ccC
Confidence 233457999999999999989999999999999999999999999753221110 00111000000 001
Q ss_pred cCCCchHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHH
Q 001226 1068 SFWDSDDQLKALRLLELALECTRQVADMRP-----SMREVVGF 1105 (1119)
Q Consensus 1068 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~ell~~ 1105 (1119)
. ...+.++.+++.+||+.||++|| +++|+++|
T Consensus 409 p------~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H 445 (576)
T 2acx_A 409 S------ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEH 445 (576)
T ss_dssp C------TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred C------ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence 0 11235678999999999999999 78999876
No 164
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=6.9e-37 Score=339.98 Aligned_cols=249 Identities=23% Similarity=0.341 Sum_probs=195.6
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-----ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-----TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
.+|...+.||+|+||.||+|.++.++..||+|++.... ..+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 101 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET 101 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence 46888899999999999999999999999999985432 4578999999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCC-CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe---CCCCceEEEecccccccc
Q 001226 909 MPGGTLFNVLHQNE-PRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL---DSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~vkl~DfGla~~~~ 984 (1119)
+++|+|.+++.... ....+++..+..++.|+++|++|||+. +|+||||||+||++ +.++.+||+|||+++...
T Consensus 102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~ 178 (285)
T 3is5_A 102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK 178 (285)
T ss_dssp CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence 99999999986532 123589999999999999999999999 99999999999999 456889999999998664
Q ss_pred CCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
.. .......+|+.|+|||.+. +.++.++||||+|+++|||++|+.||...... ... ...... .
T Consensus 179 ~~---~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~--~~~---~~~~~~--------~ 241 (285)
T 3is5_A 179 SD---EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE--EVQ---QKATYK--------E 241 (285)
T ss_dssp -----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHH---HHHHHC--------C
T ss_pred Cc---ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHH--HHH---hhhccC--------C
Confidence 32 2233457899999999775 56899999999999999999999999643111 000 000000 0
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.... ......+..+.+++.+||+.||++|||++|++++
T Consensus 242 ~~~~---~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 279 (285)
T 3is5_A 242 PNYA---VECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHH 279 (285)
T ss_dssp CCCC---C--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred cccc---cccCcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0000 0001123467899999999999999999999874
No 165
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=2.8e-37 Score=344.07 Aligned_cols=252 Identities=20% Similarity=0.317 Sum_probs=199.6
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCc-------eEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCce
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSR-------KHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHG 902 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~-------~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 902 (1119)
.+|+..+.||+|+||.||+|.+..++ ..||+|+++.. ...+.+|+.+++.++||||+++++++.+++..
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN 87 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence 35677799999999999999988765 57999998543 24578899999999999999999999999999
Q ss_pred EEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCc--------eEE
Q 001226 903 FIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELE--------PKI 974 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~--------vkl 974 (1119)
++||||+++++|.+++..... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++. +|+
T Consensus 88 ~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl 162 (289)
T 4fvq_A 88 ILVQEFVKFGSLDTYLKKNKN--CINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIKL 162 (289)
T ss_dssp EEEEECCTTCBHHHHHHHTGG--GCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEEEE
T ss_pred EEEEECCCCCCHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccceeee
Confidence 999999999999999987543 489999999999999999999999 9999999999999998887 999
Q ss_pred EeccccccccCCCCCCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhh
Q 001226 975 GDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKL 1053 (1119)
Q Consensus 975 ~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 1053 (1119)
+|||.+..... .....+|+.|+|||.+.+ ..++.++||||+||++|||++|..|+........ ... ..
T Consensus 163 ~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~----~~~-~~ 231 (289)
T 4fvq_A 163 SDPGISITVLP------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQR----KLQ-FY 231 (289)
T ss_dssp CCCCSCTTTSC------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH----HHH-HH
T ss_pred ccCcccccccC------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHH----HHH-Hh
Confidence 99999875432 233467899999998877 6789999999999999999996655432211100 000 00
Q ss_pred cccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCC
Q 001226 1054 QENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEG 1115 (1119)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~ 1115 (1119)
..... ... ..+..+.+++.+||+.||++|||++|++++|+++......
T Consensus 232 ~~~~~--------~~~------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~~ 279 (289)
T 4fvq_A 232 EDRHQ--------LPA------PKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDLV 279 (289)
T ss_dssp HTTCC--------CCC------CSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-----
T ss_pred hccCC--------CCC------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCC
Confidence 00000 000 0123567999999999999999999999999999876544
No 166
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=5.6e-37 Score=337.35 Aligned_cols=254 Identities=23% Similarity=0.393 Sum_probs=206.3
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMP 910 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 910 (1119)
.+|+..+.||+|+||.||+|.+.. ++.||+|+++.. .+.+.+|+.+++.++||||+++++++.+++..++||||++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~-~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 86 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLN-KDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME 86 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETT-TEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred hheeeeeEecCCCceeEEEEEecC-CCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence 356677899999999999999874 788999998643 3568899999999999999999999999999999999999
Q ss_pred CCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCC
Q 001226 911 GGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSS 990 (1119)
Q Consensus 911 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~ 990 (1119)
+++|.+++..... .+++..+..++.|+++|++|||+. +++||||||+||+++.++.+|++|||.+....... ..
T Consensus 87 ~~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-~~ 160 (267)
T 3t9t_A 87 HGCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YT 160 (267)
T ss_dssp TCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-HH
T ss_pred CCcHHHHHhhCcc--cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccccccccccccc-cc
Confidence 9999999987543 488999999999999999999999 99999999999999999999999999998654321 11
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||...... ...... ... ....
T Consensus 161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-----~~~~~i-~~~------~~~~--- 225 (267)
T 3t9t_A 161 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS-----EVVEDI-STG------FRLY--- 225 (267)
T ss_dssp STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----HHHHHH-HTT------CCCC---
T ss_pred ccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH-----HHHHHH-hcC------CcCC---
Confidence 2223456789999999988889999999999999999999 89998643110 000000 000 0000
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
.+...+..+.+++.+||+.||++|||+++++++|+++.++
T Consensus 226 ---~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 226 ---KPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp ---CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ---CCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 0111234678999999999999999999999999998764
No 167
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.2e-36 Score=343.14 Aligned_cols=259 Identities=23% Similarity=0.334 Sum_probs=195.4
Q ss_pred HHhhCCceeeecCCccEEEEEeCC---CceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeecCC----
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNN---SRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTKDE---- 900 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~---~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~~~---- 900 (1119)
.+|+..+.||+|+||.||+|.+.. +++.||+|+++... ..+.+|+.+++.++||||+++++++.+.+
T Consensus 34 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~ 113 (313)
T 3brb_A 34 NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGI 113 (313)
T ss_dssp GGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC------
T ss_pred HHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCC
Confidence 467778999999999999998764 46689999986332 34778999999999999999999987754
Q ss_pred -ceEEEEeccCCCCHHHhhccCC---CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEe
Q 001226 901 -HGFIVTEYMPGGTLFNVLHQNE---PRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGD 976 (1119)
Q Consensus 901 -~~~lV~e~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~D 976 (1119)
..++||||+++++|.+++.... ....+++..++.++.|+++|+.|||+. +|+||||||+||+++.++.+||+|
T Consensus 114 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kl~D 190 (313)
T 3brb_A 114 PKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVCVAD 190 (313)
T ss_dssp -CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCEEECS
T ss_pred cccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEEee
Confidence 3499999999999999985432 234589999999999999999999999 999999999999999999999999
Q ss_pred ccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcc
Q 001226 977 FGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 977 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
||+++...............+++.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .. .......
T Consensus 191 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~---~~~~~~~ 265 (313)
T 3brb_A 191 FGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH--EM---YDYLLHG 265 (313)
T ss_dssp CSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GH---HHHHHTT
T ss_pred cCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH--HH---HHHHHcC
Confidence 999987654433333445567889999999999999999999999999999999 88888643211 10 0000000
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1056 NHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
. ... .+...+..+.+++.+||+.||++|||+++++++|+++.++.
T Consensus 266 -~------~~~------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l 310 (313)
T 3brb_A 266 -H------RLK------QPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 310 (313)
T ss_dssp -C------CCC------CBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred -C------CCC------CCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 0 000 01122346889999999999999999999999999987654
No 168
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=1.6e-37 Score=349.84 Aligned_cols=256 Identities=25% Similarity=0.391 Sum_probs=193.5
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-------ccHHHHHHHHhhcCCCCEEEEeeeeecCCce----E
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHG----F 903 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~----~ 903 (1119)
+|+..+.||+|+||.||+|++..+++.||||+++... ..+.+|+.+++.++||||+++++++...... |
T Consensus 13 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 92 (311)
T 3ork_A 13 RYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPY 92 (311)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccE
Confidence 5777899999999999999999999999999986432 2467899999999999999999998765543 9
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+||||+++++|.++++..+ .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 93 lv~e~~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~ 166 (311)
T 3ork_A 93 IVMEYVDGVTLRDIVHTEG---PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAI 166 (311)
T ss_dssp EEEECCCEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred EEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence 9999999999999998755 489999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCC-CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 984 SDSHSS-STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 984 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
...... .......||+.|+|||.+.+..++.++||||+||++|||++|+.||....... ..+ ........
T Consensus 167 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~---~~~--~~~~~~~~---- 237 (311)
T 3ork_A 167 ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS---VAY--QHVREDPI---- 237 (311)
T ss_dssp ---------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHH--HHHHCCCC----
T ss_pred cccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH---HHH--HHhcCCCC----
Confidence 543221 22334578999999999999999999999999999999999999996431110 000 00000000
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHH-HHHHHHcccc
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMRE-VVGFLIKLND 1111 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~e-ll~~L~~~~~ 1111 (1119)
... ......+.++.+++.+||+.||++||++.+ +...+.+...
T Consensus 238 -~~~-----~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~ 281 (311)
T 3ork_A 238 -PPS-----ARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 281 (311)
T ss_dssp -CHH-----HHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred -Ccc-----cccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhc
Confidence 000 000113456889999999999999996555 5555655543
No 169
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=2.4e-37 Score=352.12 Aligned_cols=258 Identities=24% Similarity=0.418 Sum_probs=207.5
Q ss_pred HhhCCceeeecCCccEEEEEeCCCce-----EEEEEecccc-----cccHHHHHHHHhhc-CCCCEEEEeeeeecCCceE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRK-----HWAVKKLNRS-----ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGF 903 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~-----~vavK~~~~~-----~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 903 (1119)
+|+..+.||+|+||.||+|.+..+++ .||+|+++.. ...+.+|+.+++.+ +||||+++++++.+++..+
T Consensus 47 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~ 126 (333)
T 2i1m_A 47 NLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVL 126 (333)
T ss_dssp SEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceE
Confidence 56667899999999999999876554 7999998643 24578899999999 8999999999999999999
Q ss_pred EEEeccCCCCHHHhhccCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCce
Q 001226 904 IVTEYMPGGTLFNVLHQNEP-----------RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEP 972 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~-----------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~v 972 (1119)
+||||+++|+|.+++..... ...+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+
T Consensus 127 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~ 203 (333)
T 2i1m_A 127 VITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVA 203 (333)
T ss_dssp EEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEGGGEE
T ss_pred EEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECCCCeE
Confidence 99999999999999976421 22478999999999999999999999 99999999999999999999
Q ss_pred EEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhh
Q 001226 973 KIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRW 1051 (1119)
Q Consensus 973 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~ 1051 (1119)
||+|||+++...............+|+.|+|||.+.+..++.++||||+||++|||++ |..||........ .......
T Consensus 204 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~-~~~~~~~ 282 (333)
T 2i1m_A 204 KIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSK-FYKLVKD 282 (333)
T ss_dssp EBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHH-HHHHHHH
T ss_pred EECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHH-HHHHHhc
Confidence 9999999987654433333445567889999999888889999999999999999998 9999865321110 0000000
Q ss_pred hhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1052 KLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
. ..... +...+..+.+++.+||+.||++|||++|++++|+++.++
T Consensus 283 ----~------~~~~~------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 327 (333)
T 2i1m_A 283 ----G------YQMAQ------PAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQE 327 (333)
T ss_dssp ----T------CCCCC------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ----C------CCCCC------CCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHh
Confidence 0 00000 011234678999999999999999999999999987654
No 170
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=1.8e-36 Score=358.86 Aligned_cols=259 Identities=24% Similarity=0.271 Sum_probs=193.5
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecC------Cc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKD------EH 901 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~ 901 (1119)
.+|+..++||+|+||+||+|.+..+++.||||++... ...+.+|+.+++.++||||+++++++... ..
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~ 141 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD 141 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCe
Confidence 4677889999999999999999999999999998542 24567899999999999999999998654 35
Q ss_pred eEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 902 GFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 902 ~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
.|+||||+++ ++.+.+.. .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 142 ~~lv~E~~~~-~l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a~ 212 (464)
T 3ttj_A 142 VYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLAR 212 (464)
T ss_dssp EEEEEECCSE-EHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC-
T ss_pred EEEEEeCCCC-CHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEeee
Confidence 6999999975 46666643 388999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhh-----------
Q 001226 982 LISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTR----------- 1050 (1119)
Q Consensus 982 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~----------- 1050 (1119)
..... ......+||+.|+|||++.+..|+.++||||+||++|||++|+.||......+. ......
T Consensus 213 ~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~-~~~i~~~lg~p~~~~~~ 288 (464)
T 3ttj_A 213 TAGTS---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQ-WNKVIEQLGTPCPEFMK 288 (464)
T ss_dssp ----C---CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHHHCSCCHHHHT
T ss_pred ecCCC---cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHhcCCCCHHHHH
Confidence 76432 233456899999999999999999999999999999999999999965321000 000000
Q ss_pred -------hhhcc-----ccccccccccc-ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1051 -------WKLQE-----NHECICFLDRE-ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1051 -------~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..... .......+... ...........+.++.+++.+||+.||++|||++|+++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 356 (464)
T 3ttj_A 289 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH 356 (464)
T ss_dssp TSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 00000 00000000000 011111223346678999999999999999999999986
No 171
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.4e-37 Score=348.86 Aligned_cols=268 Identities=25% Similarity=0.348 Sum_probs=204.0
Q ss_pred HhhCCceeeecCCccEEEEE----eCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecC--CceE
Q 001226 835 RATEGRIIGKGKHGTVYRTL----SNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKD--EHGF 903 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~----~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~ 903 (1119)
+|+..+.||+|+||.||+|+ +..+++.||+|+++.. ...+.+|+.+++.++||||+++++++.++ ...+
T Consensus 22 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 101 (302)
T 4e5w_A 22 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK 101 (302)
T ss_dssp GEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEE
T ss_pred hhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEE
Confidence 46777999999999999998 5667899999998633 24578999999999999999999999876 6689
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+||||+++++|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++...
T Consensus 102 lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 176 (302)
T 4e5w_A 102 LIMEFLPSGSLKEYLPKNKN--KINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAI 176 (302)
T ss_dssp EEEECCTTCBHHHHHHHHTT--TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEeCCCCcHHHHHHhccc--cCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccccc
Confidence 99999999999999976543 489999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCC-CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 984 SDSHSS-STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 984 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
...... .......+|..|+|||.+.+..++.++||||+|+++|||++|+.|+................. .........
T Consensus 177 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 255 (302)
T 4e5w_A 177 ETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQ-MTVTRLVNT 255 (302)
T ss_dssp CTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGG-GHHHHHHHH
T ss_pred cCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccc-cCHHHHHHH
Confidence 543221 223445688899999999888899999999999999999999988643210000000000000 000000000
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccc
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLN 1110 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~ 1110 (1119)
+...... ..+...+..+.+++.+||+.||++|||++|+++.|+++.
T Consensus 256 ~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 256 LKEGKRL--PCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHTTCCC--CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HhccCCC--CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 0000000 011123457889999999999999999999999999875
No 172
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=4e-37 Score=364.37 Aligned_cols=245 Identities=24% Similarity=0.328 Sum_probs=195.1
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..++||+|+||.||+|.+..+++.||||+++.. ...+.+|+.+++.++||||+++++++.+.+..|+||
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~ 227 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVM 227 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEE
T ss_pred HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEE
Confidence 3577789999999999999999999999999998532 234667999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHY-DCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
||+++|+|.+++.... .+++..+..++.|++.||+|||+ . +|+||||||+||+++.++.+||+|||+++....
T Consensus 228 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 301 (446)
T 4ejn_A 228 EYANGGELFFHLSRER---VFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK 301 (446)
T ss_dssp CCCSSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC
T ss_pred eeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceeccC
Confidence 9999999999998754 48999999999999999999998 7 999999999999999999999999999985432
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
. ........||+.|+|||++.+..++.++||||+||++|||++|+.||..... . ....... ..
T Consensus 302 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~---~~~~~i~----------~~ 364 (446)
T 4ejn_A 302 D--GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--E---KLFELIL----------ME 364 (446)
T ss_dssp -------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--H---HHHHHHH----------HC
T ss_pred C--CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH--H---HHHHHHH----------hC
Confidence 2 2223456799999999999999999999999999999999999999964311 0 0001000 00
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRP-----SMREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~ell~~ 1105 (1119)
.... +...+..+.+++.+||+.||++|| +++|+++|
T Consensus 365 ~~~~----p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~h 405 (446)
T 4ejn_A 365 EIRF----PRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 405 (446)
T ss_dssp CCCC----CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred CCCC----CccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence 1110 111234678999999999999999 99999874
No 173
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=5.4e-37 Score=352.34 Aligned_cols=240 Identities=25% Similarity=0.320 Sum_probs=190.9
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-------ccHHHHHHH-HhhcCCCCEEEEeeeeecCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-------TNFDVEIRT-LSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-------~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|+++.+++.||||++++.. ..+.+|..+ ++.++||||+++++++.+++..|+|
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv 117 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV 117 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence 46777899999999999999999999999999985432 234556555 4678999999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++|+|.+++...+ .+++..++.++.||+.|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 118 ~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~ 191 (373)
T 2r5t_A 118 LDYINGGELFYHLQRER---CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIE 191 (373)
T ss_dssp EECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred EeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence 99999999999998754 488999999999999999999999 999999999999999999999999999986432
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
. ........||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...... ++..
T Consensus 192 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~~----------i~~~ 254 (373)
T 2r5t_A 192 H--NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT-----AEMYDN----------ILNK 254 (373)
T ss_dssp C--CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH-----HHHHHH----------HHHS
T ss_pred C--CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH-----HHHHHH----------HHhc
Confidence 2 1233456799999999999999999999999999999999999999964211 000000 1111
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMR 1100 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ 1100 (1119)
..... ...+..+.+++.+||+.||++||++.
T Consensus 255 ~~~~~----~~~~~~~~~li~~lL~~dp~~R~~~~ 285 (373)
T 2r5t_A 255 PLQLK----PNITNSARHLLEGLLQKDRTKRLGAK 285 (373)
T ss_dssp CCCCC----SSSCHHHHHHHHHHTCSSGGGSTTTT
T ss_pred ccCCC----CCCCHHHHHHHHHHcccCHHhCCCCC
Confidence 11110 11234678999999999999999985
No 174
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2e-36 Score=338.68 Aligned_cols=260 Identities=27% Similarity=0.399 Sum_probs=204.6
Q ss_pred HhhCCceeeecCCccEEEEEeCCCc---eEEEEEeccccc-----ccHHHHHHHHhhcCCCCEEEEeeeeecCCce-EEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSR---KHWAVKKLNRSE-----TNFDVEIRTLSLVRHRNILRIVGSCTKDEHG-FIV 905 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~---~~vavK~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~lV 905 (1119)
.|..+++||+|+||+||+|.+..++ ..||+|+++... ..+.+|+.+++.++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 3445688999999999999865543 479999986432 4577899999999999999999999876655 999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++|+|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 102 ~e~~~~~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 176 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSPQR--NPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILD 176 (298)
T ss_dssp ECCCTTCBHHHHHHCTTC--CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTT
T ss_pred EecccCCCHHHHHhcccc--CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccC
Confidence 999999999999987442 588999999999999999999999 999999999999999999999999999986644
Q ss_pred CC--CCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 986 SH--SSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 986 ~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
.. .........+|+.|+|||...+..++.++||||+|+++|||++|..|+....... .. ........
T Consensus 177 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~-~~---~~~~~~~~------- 245 (298)
T 3pls_A 177 REYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPF-DL---THFLAQGR------- 245 (298)
T ss_dssp GGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGG-GH---HHHHHTTC-------
T ss_pred CcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHH-HH---HHHhhcCC-------
Confidence 32 1223334567899999999999999999999999999999999766654321111 11 11000000
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
.. ..+...+..+.+++.+||+.||++|||++++++.|+++..+..+.
T Consensus 246 --~~----~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~ 292 (298)
T 3pls_A 246 --RL----PQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGD 292 (298)
T ss_dssp --CC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSC
T ss_pred --CC----CCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhcc
Confidence 00 001112346789999999999999999999999999998876554
No 175
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.5e-37 Score=352.51 Aligned_cols=258 Identities=28% Similarity=0.444 Sum_probs=193.4
Q ss_pred hhCCceeeecCCccEEEEEeCCC---ceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeec-CCceEEEE
Q 001226 836 ATEGRIIGKGKHGTVYRTLSNNS---RKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTK-DEHGFIVT 906 (1119)
Q Consensus 836 ~~~~~~lG~G~fg~Vy~~~~~~~---~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~lV~ 906 (1119)
|...+.||+|+||.||+|.+..+ +..||+|.++.. ...+.+|+.+++.++||||+++++++.+ ++..++||
T Consensus 91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~ 170 (373)
T 3c1x_A 91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL 170 (373)
T ss_dssp EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEE
T ss_pred eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEE
Confidence 44557899999999999987533 356899988642 2457889999999999999999998654 56789999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+++|+|.++++.... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 171 e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 245 (373)
T 3c1x_A 171 PYMKHGDLRNFIRNETH--NPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 245 (373)
T ss_dssp ECCTTCBHHHHHHCTTC--CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred ECCCCCCHHHHHhhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecccccccccc
Confidence 99999999999976543 478999999999999999999999 9999999999999999999999999999866443
Q ss_pred CCC--CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 987 HSS--STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 987 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
... .......+|+.|+|||.+.+..++.++||||+||++|||++ |..||...... +... ..... .
T Consensus 246 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~--~~~~---~~~~~-~------ 313 (373)
T 3c1x_A 246 EFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITV---YLLQG-R------ 313 (373)
T ss_dssp ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSS--CHHH---HHHTT-C------
T ss_pred ccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHH--HHHH---HHHcC-C------
Confidence 211 12234567889999999988899999999999999999999 66666533111 1111 00000 0
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
... .+...+..+.+++.+||+.||++|||++|++++|+++.....++
T Consensus 314 --~~~----~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~ 360 (373)
T 3c1x_A 314 --RLL----QPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 360 (373)
T ss_dssp --CCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred --CCC----CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcccc
Confidence 000 01112346789999999999999999999999999998776654
No 176
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=1.1e-36 Score=337.71 Aligned_cols=254 Identities=27% Similarity=0.376 Sum_probs=200.4
Q ss_pred HHhhCCceeeecCCccEEEEEeCC---CceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNN---SRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~---~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|.+.. ++..||+|+++.. ...+.+|+.+++.++||||+++++++.+ +..++|
T Consensus 12 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v 90 (281)
T 3cc6_A 12 EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWII 90 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEEE
T ss_pred cceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEEE
Confidence 357777999999999999998653 3457999998653 3457889999999999999999999865 456899
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++++|.+++...+. .+++..+..++.|+++|+.|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 91 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 165 (281)
T 3cc6_A 91 MELYPYGELGHYLERNKN--SLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIED 165 (281)
T ss_dssp EECCTTCBHHHHHHHHTT--TCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC--
T ss_pred EecCCCCCHHHHHHhccc--cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCccccc
Confidence 999999999999987543 488999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
.. ........+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... ........ ..
T Consensus 166 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~--~~~~~~~~----~~------- 231 (281)
T 3cc6_A 166 ED-YYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK--DVIGVLEK----GD------- 231 (281)
T ss_dssp --------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG--GHHHHHHH----TC-------
T ss_pred cc-ccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH--HHHHHHhc----CC-------
Confidence 22 122334457889999999988889999999999999999998 99998643211 11100000 00
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
... .+...+..+.+++.+||+.||++|||++|++++|+++.+.
T Consensus 232 -~~~----~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 274 (281)
T 3cc6_A 232 -RLP----KPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM 274 (281)
T ss_dssp -CCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -CCC----CCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence 000 0011234678999999999999999999999999988654
No 177
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=1.2e-36 Score=335.33 Aligned_cols=249 Identities=23% Similarity=0.385 Sum_probs=200.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecC--CceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKD--EHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|.+. ++.||||+++.. ...+.+|+.+++.++||||+++++++.+. +..++|
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~--~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET--TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC--CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 46677799999999999999986 788999998643 23578899999999999999999999876 778999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQ--IIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
|||+++|+|.+++..... ..+++..+..++.|+++|++|||+. + ++||||||+||+++.++.++++|||++...
T Consensus 88 ~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~ 163 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTN-FVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSF 163 (271)
T ss_dssp EECCTTCBHHHHHHSCSS-CCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT
T ss_pred ecccCCCcHHHHHhhccc-CCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeee
Confidence 999999999999987542 3589999999999999999999998 7 999999999999999999999999987643
Q ss_pred cCCCCCCcccccccCCCcccccccCCCCCCC---cchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccc
Q 001226 984 SDSHSSSTRSAIVGSLGYIAPENAYSTRLTE---KSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECI 1060 (1119)
Q Consensus 984 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1119)
.. ....+|+.|+|||.+.+..++. ++||||+|+++|||++|+.||........ ... ....
T Consensus 164 ~~-------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~----~~~-~~~~----- 226 (271)
T 3kmu_A 164 QS-------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI----GMK-VALE----- 226 (271)
T ss_dssp SC-------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH----HHH-HHHS-----
T ss_pred cc-------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH----HHH-HHhc-----
Confidence 22 2346799999999887765544 79999999999999999999964311100 000 0000
Q ss_pred ccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1061 CFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
...... +...+..+.+++.+||+.||++|||++|+++.|+++.++
T Consensus 227 -~~~~~~------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~~ 271 (271)
T 3kmu_A 227 -GLRPTI------PPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQDK 271 (271)
T ss_dssp -CCCCCC------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC-
T ss_pred -CCCCCC------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence 000011 112244688999999999999999999999999998763
No 178
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-37 Score=350.83 Aligned_cols=269 Identities=16% Similarity=0.194 Sum_probs=208.3
Q ss_pred HHhhCCceeeecCCccEEEEEeCC--------CceEEEEEecccccccHHHHHHHHhhcCCCCEEE--------------
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNN--------SRKHWAVKKLNRSETNFDVEIRTLSLVRHRNILR-------------- 891 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~--------~~~~vavK~~~~~~~~~~~E~~~l~~l~h~niv~-------------- 891 (1119)
.+|+..+.||+|+||.||+|++.. .++.||+|++... ..+.+|++++++++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~ 120 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIP 120 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCC
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-chHHHHHHHHHHhcccchhhhhhhhccCCccCcc
Confidence 367778999999999999999987 3789999998754 57899999999999999887
Q ss_pred -Eeeeeec-CCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC
Q 001226 892 -IVGSCTK-DEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE 969 (1119)
Q Consensus 892 -l~~~~~~-~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~ 969 (1119)
+++++.. ++..++||||+ +++|.+++.... ...+++..+..++.|++.|++|||+. +|+||||||+||+++.+
T Consensus 121 ~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl~~~~ 195 (352)
T 2jii_A 121 TCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSP-KHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIFVDPE 195 (352)
T ss_dssp CCCEEEEETTTEEEEEEECC-CEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEEEETT
T ss_pred chhhccccCCcEEEEEecCC-CcCHHHHHHhCC-cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEEcCC
Confidence 5666655 67789999999 999999998753 23599999999999999999999999 99999999999999999
Q ss_pred C--ceEEEeccccccccCCCCC-----CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCC
Q 001226 970 L--EPKIGDFGMSKLISDSHSS-----STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGED 1042 (1119)
Q Consensus 970 ~--~vkl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 1042 (1119)
+ .+||+|||+++........ .......||+.|+|||.+.+..++.++||||+||++|||++|+.||.......
T Consensus 196 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 275 (352)
T 2jii_A 196 DQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNT 275 (352)
T ss_dssp EEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH
T ss_pred CCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCH
Confidence 8 8999999999876543211 12234579999999999999899999999999999999999999997542221
Q ss_pred CceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1043 TDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
............. .....+.... ....+..+.+++.+||+.||++|||++++++.|+++.++.+..
T Consensus 276 ~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~ 341 (352)
T 2jii_A 276 EDIMKQKQKFVDK---PGPFVGPCGH-----WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRVS 341 (352)
T ss_dssp HHHHHHHHHHHHS---CCCEECTTSC-----EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCC---hhhhhhhccc-----cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCCC
Confidence 1111111100000 0111110000 0012356889999999999999999999999999998776543
No 179
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-36 Score=345.18 Aligned_cols=256 Identities=27% Similarity=0.432 Sum_probs=198.1
Q ss_pred HhhCCceeeecCCccEEEEEeCCC----ceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNS----RKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~----~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
+|+..+.||+|+||.||+|.+..+ +..||||+++.. ...+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 45 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 124 (333)
T 1mqb_A 45 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMII 124 (333)
T ss_dssp TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEE
Confidence 455668999999999999987654 346999998643 23477899999999999999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++++|.+++..... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 125 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~ 199 (333)
T 1mqb_A 125 TEYMENGALDKFLREKDG--EFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLED 199 (333)
T ss_dssp EECCTTEEHHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred EeCCCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhhcc
Confidence 999999999999987533 489999999999999999999999 999999999999999999999999999987654
Q ss_pred CCC-CCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 986 SHS-SSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 986 ~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
... ........+|+.|+|||.+.+..++.++||||+||++|||++ |+.||...... .. .... ....
T Consensus 200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~--~~---~~~~-~~~~------ 267 (333)
T 1mqb_A 200 DPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH--EV---MKAI-NDGF------ 267 (333)
T ss_dssp -----------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HH---HHHH-HTTC------
T ss_pred ccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH--HH---HHHH-HCCC------
Confidence 321 112223456789999999988899999999999999999998 99998643110 00 0000 0000
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
... .+...+..+.+++.+||+.+|++||++++++++|+++....
T Consensus 268 --~~~----~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 311 (333)
T 1mqb_A 268 --RLP----TPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP 311 (333)
T ss_dssp --CCC----CCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred --cCC----CcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 000 01122456789999999999999999999999999886543
No 180
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.4e-37 Score=345.64 Aligned_cols=261 Identities=21% Similarity=0.231 Sum_probs=196.1
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+|+..+.||+|+||+||+|.+..+++.||+|++.... ..+.+|+.+++.++||||+++++++.+++..++||||
T Consensus 4 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 83 (311)
T 4agu_A 4 KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEY 83 (311)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEe
Confidence 5677799999999999999999999999999885432 3466899999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~ 988 (1119)
+++++|.+++.... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||.++......
T Consensus 84 ~~~~~l~~~~~~~~---~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 156 (311)
T 4agu_A 84 CDHTVLHELDRYQR---GVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPS- 156 (311)
T ss_dssp CSEEHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred CCCchHHHHHhhhc---CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcc-
Confidence 99999999887654 489999999999999999999999 99999999999999999999999999998765322
Q ss_pred CCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcc-----------c
Q 001226 989 SSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQE-----------N 1056 (1119)
Q Consensus 989 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~-----------~ 1056 (1119)
.......+|+.|+|||.+.+ ..++.++||||+|+++|||++|+.||......+.. ......... .
T Consensus 157 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 233 (311)
T 4agu_A 157 -DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQL--YLIRKTLGDLIPRHQQVFSTN 233 (311)
T ss_dssp ----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH--HHHHHHHCSCCHHHHHHHHTC
T ss_pred -cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHHhcccccccccccccc
Confidence 22234578999999998875 67899999999999999999999999653211110 000000000 0
Q ss_pred ccccccccccccCCCchH---HHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1057 HECICFLDREISFWDSDD---QLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
........+......... ...+..+.+++.+||+.||++|||++|++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 285 (311)
T 4agu_A 234 QYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH 285 (311)
T ss_dssp GGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred cccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence 000000000000000000 1234567899999999999999999999976
No 181
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=349.39 Aligned_cols=261 Identities=20% Similarity=0.256 Sum_probs=194.5
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-----ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEecc
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-----TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
+|+..+.||+|+||+||+|.+..+++.||+|+++... ..+.+|+.+++.++||||+++++++.+++..++||||+
T Consensus 3 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 82 (324)
T 3mtl_A 3 TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYL 82 (324)
T ss_dssp SEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred ceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEeccc
Confidence 5677789999999999999999999999999885332 24557999999999999999999999999999999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCC
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSS 989 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~ 989 (1119)
+ |+|.+++...+. .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++..... .
T Consensus 83 ~-~~l~~~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~--~ 154 (324)
T 3mtl_A 83 D-KDLKQYLDDCGN--IINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIP--T 154 (324)
T ss_dssp S-EEHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC------
T ss_pred c-cCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCC--c
Confidence 7 599999887643 489999999999999999999999 9999999999999999999999999999865432 1
Q ss_pred CcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhh--ccccccccccc--
Q 001226 990 STRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKL--QENHECICFLD-- 1064 (1119)
Q Consensus 990 ~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-- 1064 (1119)
.......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+. ........ ...........
T Consensus 155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~ 232 (324)
T 3mtl_A 155 KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQ--LHFIFRILGTPTEETWPGILSNE 232 (324)
T ss_dssp --------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHHHHHHHCCCCTTTSTTGGGCH
T ss_pred cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHHHhCCCChHhchhhhcch
Confidence 22334578999999998876 5689999999999999999999999975321110 00000000 00000000000
Q ss_pred ----ccccCCC-----chHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1065 ----REISFWD-----SDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1065 ----~~~~~~~-----~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
....... ......+.++.+++.+||+.||++|||++|++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 282 (324)
T 3mtl_A 233 EFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH 282 (324)
T ss_dssp HHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred hhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence 0000000 0001224567899999999999999999999885
No 182
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=1.8e-36 Score=354.97 Aligned_cols=248 Identities=27% Similarity=0.341 Sum_probs=191.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------------cccHHHHHHHHhhcCCCCEEEEeeeeecCCc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEH 901 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 901 (1119)
.+|...+.||+|+||.||+|.+..+++.||||++... ...+.+|+.++++++||||+++++++.. +.
T Consensus 135 ~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-~~ 213 (419)
T 3i6u_A 135 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-ED 213 (419)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-SE
T ss_pred ccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-Cc
Confidence 4678889999999999999999999999999998532 1247899999999999999999999854 45
Q ss_pred eEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC---ceEEEecc
Q 001226 902 GFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL---EPKIGDFG 978 (1119)
Q Consensus 902 ~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~---~vkl~DfG 978 (1119)
.|+||||+++|+|.+++.... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 214 ~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~DFG 287 (419)
T 3i6u_A 214 YYIVLELMEGGELFDKVVGNK---RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFG 287 (419)
T ss_dssp EEEEEECCTTCBGGGGTSSSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEECCSS
T ss_pred eEEEEEcCCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEeecc
Confidence 799999999999999987654 489999999999999999999999 999999999999997654 59999999
Q ss_pred ccccccCCCCCCcccccccCCCcccccccCC---CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcc
Q 001226 979 MSKLISDSHSSSTRSAIVGSLGYIAPENAYS---TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 979 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
+++..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||........ . ......
T Consensus 288 ~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~-~---~~~i~~- 359 (419)
T 3i6u_A 288 HSKILGET---SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS-L---KDQITS- 359 (419)
T ss_dssp TTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCC-H---HHHHHT-
T ss_pred cceecCCC---ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHH-H---HHHHhc-
Confidence 99876542 22334679999999998753 5678899999999999999999999975321111 0 000000
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1056 NHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.............+..+.+++.+||+.||++|||++|+++|
T Consensus 360 ---------~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 400 (419)
T 3i6u_A 360 ---------GKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH 400 (419)
T ss_dssp ---------TCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred ---------CCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence 00000000111234578899999999999999999999986
No 183
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.9e-37 Score=357.95 Aligned_cols=269 Identities=23% Similarity=0.302 Sum_probs=191.3
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcC-CCCEEEEeeeeecC--CceE
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVR-HRNILRIVGSCTKD--EHGF 903 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~-h~niv~l~~~~~~~--~~~~ 903 (1119)
+.+|+..+.||+|+||.||+|.+..+++.||||++... ...+.+|+.+++.+. ||||+++++++..+ ...|
T Consensus 8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~ 87 (388)
T 3oz6_A 8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVY 87 (388)
T ss_dssp HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEE
T ss_pred cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEE
Confidence 45788889999999999999999999999999988432 234668999999997 99999999998754 3689
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+||||++ ++|.++++.. .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+|+..
T Consensus 88 lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 159 (388)
T 3oz6_A 88 LVFDYME-TDLHAVIRAN----ILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRSF 159 (388)
T ss_dssp EEEECCS-EEHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred EEecccC-cCHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence 9999997 6899998764 488999999999999999999999 9999999999999999999999999999865
Q ss_pred cCCC-------------------CCCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 001226 984 SDSH-------------------SSSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDT 1043 (1119)
Q Consensus 984 ~~~~-------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 1043 (1119)
.... ........+||++|+|||++.+ ..++.++||||+||++|||++|+.||......+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~ 239 (388)
T 3oz6_A 160 VNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQ 239 (388)
T ss_dssp SSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred cccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 4311 1112234579999999998876 6789999999999999999999999975321100
Q ss_pred ceeehhhh-hhcccccc-------c-ccc----------cccccCCCch----------HHHHHHHHHHHHHHccccCCC
Q 001226 1044 DIVTWTRW-KLQENHEC-------I-CFL----------DREISFWDSD----------DQLKALRLLELALECTRQVAD 1094 (1119)
Q Consensus 1044 ~~~~~~~~-~~~~~~~~-------~-~~~----------~~~~~~~~~~----------~~~~~~~l~~l~~~cl~~dP~ 1094 (1119)
....... ..+..... . ..+ .......... ....+.++.+++.+||+.||+
T Consensus 240 -~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~ 318 (388)
T 3oz6_A 240 -LERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPN 318 (388)
T ss_dssp -HHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGG
T ss_pred -HHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcc
Confidence 0000000 00000000 0 000 0000000000 001234688999999999999
Q ss_pred CCCCHHHHHHH--HHccc
Q 001226 1095 MRPSMREVVGF--LIKLN 1110 (1119)
Q Consensus 1095 ~RPs~~ell~~--L~~~~ 1110 (1119)
+|||++|+++| ++.+.
T Consensus 319 ~R~t~~e~l~Hp~~~~~~ 336 (388)
T 3oz6_A 319 KRISANDALKHPFVSIFH 336 (388)
T ss_dssp GSCCHHHHTTSTTTTTTC
T ss_pred cCCCHHHHhCCHHHHHhc
Confidence 99999999998 55443
No 184
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=2.2e-36 Score=338.41 Aligned_cols=259 Identities=28% Similarity=0.441 Sum_probs=200.9
Q ss_pred HhhCCceeeecCCccEEEEEeCCC---ceEEEEEeccccc-----ccHHHHHHHHhhcCCCCEEEEeeee-ecCCceEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNS---RKHWAVKKLNRSE-----TNFDVEIRTLSLVRHRNILRIVGSC-TKDEHGFIV 905 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~---~~~vavK~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lV 905 (1119)
+|...++||+|+||.||+|.+..+ ...||+|.++... ..+.+|+.++++++||||+++++++ ..++..++|
T Consensus 26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 105 (298)
T 3f66_A 26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 105 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred ehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEE
Confidence 456668999999999999986543 3468999886422 4577899999999999999999985 455678999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++|+|.+++..... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 106 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 180 (298)
T 3f66_A 106 LPYMKHGDLRNFIRNETH--NPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 180 (298)
T ss_dssp EECCTTCBHHHHHHCTTC--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred EeCCCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECcccccccccc
Confidence 999999999999976442 478999999999999999999999 999999999999999999999999999987654
Q ss_pred CCC--CCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCC-CCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 986 SHS--SSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRK-MPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 986 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
... ........+|+.|+|||.+.+..++.++||||+|+++|||++|. .||... .... ... .......
T Consensus 181 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-~~~~-~~~---~~~~~~~----- 250 (298)
T 3f66_A 181 KEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-NTFD-ITV---YLLQGRR----- 250 (298)
T ss_dssp GGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTS-CTTT-HHH---HHHTTCC-----
T ss_pred cchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccC-CHHH-HHH---HHhcCCC-----
Confidence 321 12233456788999999998889999999999999999999955 454332 1111 110 0000000
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
.. .+...+..+.+++.+||+.||++|||++|+++.|+++.....++
T Consensus 251 --~~------~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~~ 296 (298)
T 3f66_A 251 --LL------QPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 296 (298)
T ss_dssp --CC------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCCS
T ss_pred --CC------CCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhccC
Confidence 00 00112346789999999999999999999999999998887664
No 185
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=348.36 Aligned_cols=264 Identities=18% Similarity=0.226 Sum_probs=198.4
Q ss_pred HhhCCceeeecCCccEEEEEeCC---CceEEEEEecccccc---------------cHHHHHHHHhhcCCCCEEEEeeee
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNN---SRKHWAVKKLNRSET---------------NFDVEIRTLSLVRHRNILRIVGSC 896 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~---~~~~vavK~~~~~~~---------------~~~~E~~~l~~l~h~niv~l~~~~ 896 (1119)
+|+..+.||+|+||.||+|.+.. ++..||+|+...... .+.+|+..++.++||||+++++++
T Consensus 38 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~ 117 (345)
T 2v62_A 38 QWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSG 117 (345)
T ss_dssp EEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEE
T ss_pred eEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeeccc
Confidence 57777999999999999999987 788999999865432 244567777788999999999998
Q ss_pred ec----CCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC--
Q 001226 897 TK----DEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL-- 970 (1119)
Q Consensus 897 ~~----~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~-- 970 (1119)
.. +...|+||||+ +++|.+++...+ .+++..+..++.||+.|++|||+. +|+||||||+||+++.++
T Consensus 118 ~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~ 190 (345)
T 2v62_A 118 LTEFKGRSYRFMVMERL-GIDLQKISGQNG---TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNPD 190 (345)
T ss_dssp EEESSSCEEEEEEEECE-EEEHHHHCBGGG---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSSTT
T ss_pred ccccCCCcEEEEEEecc-CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCCC
Confidence 87 67889999999 999999998765 489999999999999999999999 999999999999999887
Q ss_pred ceEEEeccccccccCCCCC-----CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCce
Q 001226 971 EPKIGDFGMSKLISDSHSS-----STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDI 1045 (1119)
Q Consensus 971 ~vkl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 1045 (1119)
.+||+|||+++........ .......||+.|+|||.+.+..++.++||||+||++|||++|+.||..........
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~ 270 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAV 270 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHH
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHH
Confidence 9999999999876432211 11244579999999999998899999999999999999999999996321111111
Q ss_pred eehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1046 VTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
..... . ........+..... ....+..+.+++.+||+.||++||++++|++.|+++.-..
T Consensus 271 ~~~~~-~--~~~~~~~~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 330 (345)
T 2v62_A 271 QTAKT-N--LLDELPQSVLKWAP-----SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGIPL 330 (345)
T ss_dssp HHHHH-H--HHHTTTHHHHHHSC-----TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCCCC
T ss_pred HHHHH-h--hcccccHHHHhhcc-----ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCCcc
Confidence 00000 0 00000000000000 0023457899999999999999999999999999876543
No 186
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=1.4e-36 Score=342.18 Aligned_cols=265 Identities=21% Similarity=0.325 Sum_probs=200.8
Q ss_pred HHHHHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCce
Q 001226 830 YEDVIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHG 902 (1119)
Q Consensus 830 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 902 (1119)
+..+.+|+..+.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+.+++.++||||+++++++.+++..
T Consensus 28 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 107 (310)
T 2wqm_A 28 YNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNEL 107 (310)
T ss_dssp TSSGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEE
T ss_pred cccccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcE
Confidence 33456788889999999999999999988999999988531 23577899999999999999999999999999
Q ss_pred EEEEeccCCCCHHHhhccCC-CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 903 FIVTEYMPGGTLFNVLHQNE-PRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
++||||+++++|.+++.... ....+++..+..++.|+++|+.|||+. +++||||||+||+++.++.+||+|||++.
T Consensus 108 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~ 184 (310)
T 2wqm_A 108 NIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGR 184 (310)
T ss_dssp EEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC----
T ss_pred EEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEecccee
Confidence 99999999999999987532 123589999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccc
Q 001226 982 LISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECIC 1061 (1119)
Q Consensus 982 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1119)
...... .......+++.|+|||.+.+..++.++||||+|+++|||++|+.||...... ........... ..
T Consensus 185 ~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~~~--~~-- 255 (310)
T 2wqm_A 185 FFSSKT--TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCKKIEQC--DY-- 255 (310)
T ss_dssp ----------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC---HHHHHHHHHTT--CS--
T ss_pred eecCCC--ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh---HHHHHHHhhcc--cC--
Confidence 664321 1223456899999999999999999999999999999999999998643111 11111100000 00
Q ss_pred cccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1062 FLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
+... ....+..+.+++.+||+.||++|||+++++++|+++...+.
T Consensus 256 ---~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~ 300 (310)
T 2wqm_A 256 ---PPLP-----SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA 300 (310)
T ss_dssp ---CCCC-----TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred ---CCCc-----ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhh
Confidence 0000 01223467899999999999999999999999999987654
No 187
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.6e-36 Score=347.54 Aligned_cols=194 Identities=25% Similarity=0.371 Sum_probs=172.9
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcC-----CCCEEEEeeeeecCCceEEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVR-----HRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~-----h~niv~l~~~~~~~~~~~lV~ 906 (1119)
+|...++||+|+||+||+|++..+++.||||+++.. ...+..|+.+++.++ ||||+++++++...+..++||
T Consensus 36 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~ 115 (360)
T 3llt_A 36 AFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIF 115 (360)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEE
T ss_pred EEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEE
Confidence 677789999999999999999999999999998643 345677999999986 999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC------------------
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS------------------ 968 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~------------------ 968 (1119)
||+ +++|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.
T Consensus 116 e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~ 190 (360)
T 3llt_A 116 EPL-GPSLYEIITRNNY-NGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKSLITVRRVTDGKK 190 (360)
T ss_dssp CCC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCEEEEEEECTTTCCE
T ss_pred cCC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccccccchhccccccc
Confidence 999 9999999987653 2489999999999999999999999 9999999999999975
Q ss_pred -------CCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 001226 969 -------ELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPS 1038 (1119)
Q Consensus 969 -------~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~ 1038 (1119)
++.+||+|||+++.... ......||+.|+|||.+.+..++.++||||+||++|||++|+.||...
T Consensus 191 ~~~~~~~~~~~kl~DFG~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 262 (360)
T 3llt_A 191 IQIYRTKSTGIKLIDFGCATFKSD-----YHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH 262 (360)
T ss_dssp EEEEEESCCCEEECCCTTCEETTS-----CCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccccccCCCCEEEEeccCceecCC-----CCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCC
Confidence 78899999999986543 223457899999999999999999999999999999999999999753
No 188
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=2.9e-36 Score=361.09 Aligned_cols=247 Identities=26% Similarity=0.368 Sum_probs=200.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccc------ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR------SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
.+|+..++||+|+||+||+|.++.+++.||||++.. ....+.+|+.+++.++||||+++++++.+....|+|||
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 101 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE 101 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence 578889999999999999999999999999999842 33467899999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC---CCCceEEEecccccccc
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD---SELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~---~~~~vkl~DfGla~~~~ 984 (1119)
|+++|+|.+++.... .+++..+..++.|++.|+.|||+. +|+||||||+||+++ .++.+||+|||+++...
T Consensus 102 ~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 175 (486)
T 3mwu_A 102 LYTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175 (486)
T ss_dssp CCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBC
T ss_pred cCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeECC
Confidence 999999999987754 489999999999999999999999 999999999999995 45679999999998664
Q ss_pred CCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
.. .......||+.|+|||++.+ .++.++||||+||++|+|++|+.||..... ... .... ..
T Consensus 176 ~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~---~~~i----------~~ 236 (486)
T 3mwu_A 176 QN---TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDI---LKRV----------ET 236 (486)
T ss_dssp CC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHH---HHHH----------HH
T ss_pred CC---CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHH---HHHH----------Hh
Confidence 42 22334579999999998865 589999999999999999999999964311 000 0000 00
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.............+..+.+++.+||+.||++|||++|++++
T Consensus 237 ~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 237 GKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp TCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred CCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 00111111112234567899999999999999999999986
No 189
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=1.1e-36 Score=337.39 Aligned_cols=259 Identities=26% Similarity=0.415 Sum_probs=205.3
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMP 910 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 910 (1119)
.+|+..+.||+|+||.||+|.+.. +..||+|+++.. .+.+.+|+.+++.++||||+++++++.+ +..++||||++
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~ 90 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNG-HTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYME 90 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETT-TEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECCT
T ss_pred HhhhheeeecCCCCeEEEEEEEcC-CcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEecCC
Confidence 356777999999999999999764 678999998643 3568899999999999999999999864 56899999999
Q ss_pred CCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCC
Q 001226 911 GGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSS 990 (1119)
Q Consensus 911 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~ 990 (1119)
+++|.+++.... ...+++..+..++.|+++|++|||+. +|+||||||+||++++++.+||+|||.+....... ..
T Consensus 91 ~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~ 165 (279)
T 1qpc_A 91 NGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-YT 165 (279)
T ss_dssp TCBHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC-EE
T ss_pred CCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCcc-cc
Confidence 999999997643 12489999999999999999999999 99999999999999999999999999998765422 12
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
......++..|+|||.+.+..++.++||||+|+++|||++ |+.||...... .. .... ... ....
T Consensus 166 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~---~~~~-~~~------~~~~--- 230 (279)
T 1qpc_A 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--EV---IQNL-ERG------YRMV--- 230 (279)
T ss_dssp CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HH---HHHH-HTT------CCCC---
T ss_pred cccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH--HH---HHHH-hcc------cCCC---
Confidence 2233456889999999988889999999999999999999 89998643111 00 0000 000 0000
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCCC
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGGM 1117 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~~ 1117 (1119)
.+...+..+.+++.+|++.||++|||++++++.|+++....++.+
T Consensus 231 ---~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~ 275 (279)
T 1qpc_A 231 ---RPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQY 275 (279)
T ss_dssp ---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC----
T ss_pred ---CcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccCCC
Confidence 011223578899999999999999999999999999988776554
No 190
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1.8e-36 Score=360.31 Aligned_cols=191 Identities=24% Similarity=0.338 Sum_probs=152.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeec-----CCce
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTK-----DEHG 902 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~-----~~~~ 902 (1119)
.+|+..+.||+|+||+||+|.++.+++.||||++... ...+.+|+.+++.++||||+++++++.. ....
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 132 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL 132 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence 3678889999999999999999999999999988542 2457789999999999999999999843 3568
Q ss_pred EEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccc
Q 001226 903 FIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKL 982 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~ 982 (1119)
|+||||+ +++|.+++.... .+++..++.++.||+.||+|||+. +||||||||+|||++.++.+||+|||+++.
T Consensus 133 ~lv~e~~-~~~L~~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~~ 205 (458)
T 3rp9_A 133 YVVLEIA-DSDFKKLFRTPV---YLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLART 205 (458)
T ss_dssp EEEECCC-SEEHHHHHHSSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEecc-ccchhhhcccCC---CCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccchh
Confidence 9999998 578999987654 489999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCC-------------------------CcccccccCCCccccccc-CCCCCCCcchHHHHHHHHHHHHhC
Q 001226 983 ISDSHSS-------------------------STRSAIVGSLGYIAPENA-YSTRLTEKSDVYSYGVILFELLFR 1031 (1119)
Q Consensus 983 ~~~~~~~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~sDvwslG~vl~elltg 1031 (1119)
....... ......+||++|+|||++ .+..++.++||||+||++|||++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 206 VDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred ccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 6432211 123345789999999976 566799999999999999999994
No 191
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=2.3e-36 Score=360.63 Aligned_cols=251 Identities=20% Similarity=0.294 Sum_probs=202.6
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
+|...++||+|+||.||+|+++.+++.||+|++++. ...+.+|+.+++.++||||+++++++.+.+..|+|||
T Consensus 186 ~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE 265 (543)
T 3c4z_A 186 WFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMT 265 (543)
T ss_dssp GEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred heEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEE
Confidence 455668899999999999999999999999998532 2457789999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 908 YMPGGTLFNVLHQNEP-RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
|++||+|.+++..... ...+++..+..++.||+.|+.|||+. +|+||||||+||+++.+|.+||+|||+++.....
T Consensus 266 ~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~ 342 (543)
T 3c4z_A 266 IMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKAG 342 (543)
T ss_dssp CCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred eccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeeccCC
Confidence 9999999999876532 33589999999999999999999999 9999999999999999999999999999876542
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||........ ......... ...
T Consensus 343 ~--~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~-~~~~~~~i~----------~~~ 409 (543)
T 3c4z_A 343 Q--TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVE-NKELKQRVL----------EQA 409 (543)
T ss_dssp C--CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCC-HHHHHHHHH----------HCC
T ss_pred C--cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchh-HHHHHHHHh----------hcc
Confidence 2 122345799999999999999999999999999999999999999975422111 111111111 111
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCH-----HHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSM-----REVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~-----~ell~~ 1105 (1119)
... +...+..+.+++.+||+.||++||++ +++++|
T Consensus 410 ~~~----p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~H 449 (543)
T 3c4z_A 410 VTY----PDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTH 449 (543)
T ss_dssp CCC----CTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTS
T ss_pred cCC----CcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcC
Confidence 110 11224567899999999999999965 677653
No 192
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=6.8e-37 Score=369.58 Aligned_cols=259 Identities=26% Similarity=0.424 Sum_probs=209.5
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~ 911 (1119)
+|+..++||+|+||.||+|.+.. +..||||+++.. .+++.+|+++++.++||||+++++++.+ +..|+||||+++
T Consensus 268 ~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~ 345 (535)
T 2h8h_A 268 SLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSK 345 (535)
T ss_dssp GEEEEEEEEECSSEEEEEEEETT-TEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTT
T ss_pred hhhhheecccCCCeEEEEEEECC-CceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehhcC
Confidence 56677899999999999999886 567999998643 3568899999999999999999999876 678999999999
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCCc
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSST 991 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~ 991 (1119)
|+|.++++.... ..+++..+..++.||++||+|||++ +|+||||||+||+++.++.+||+|||+++...... ...
T Consensus 346 gsL~~~l~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~ 420 (535)
T 2h8h_A 346 GSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-YTA 420 (535)
T ss_dssp EEHHHHHSHHHH-TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-HHT
T ss_pred CcHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-eec
Confidence 999999985421 2488999999999999999999999 99999999999999999999999999998664321 112
Q ss_pred ccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccCC
Q 001226 992 RSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFW 1070 (1119)
Q Consensus 992 ~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1119)
.....++..|+|||.+....++.++|||||||++|||++ |+.||...... +... ...... ...
T Consensus 421 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~--~~~~----~i~~~~--------~~~-- 484 (535)
T 2h8h_A 421 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--EVLD----QVERGY--------RMP-- 484 (535)
T ss_dssp TCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH--HHHH----HHHTTC--------CCC--
T ss_pred ccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHH----HHHcCC--------CCC--
Confidence 223456789999999988899999999999999999999 99998643111 1000 000000 000
Q ss_pred CchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCCCC
Q 001226 1071 DSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGGMR 1118 (1119)
Q Consensus 1071 ~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~~~ 1118 (1119)
.+...+..+.+++.+||+.||++|||+++|++.|+++....+..|+
T Consensus 485 --~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~~~~~ 530 (535)
T 2h8h_A 485 --CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQ 530 (535)
T ss_dssp --CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCSCSSC
T ss_pred --CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccCcccC
Confidence 0112245678999999999999999999999999999988887764
No 193
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=2.6e-36 Score=335.32 Aligned_cols=243 Identities=28% Similarity=0.417 Sum_probs=202.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|...+.||+|+||.||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++.+++..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 4677789999999999999999999999999998432 345788999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+++++|.+++...+ .+++..+..++.|+++|+.|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 94 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 167 (284)
T 2vgo_A 94 EFAPRGELYKELQKHG---RFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL 167 (284)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSSS
T ss_pred EeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCccc
Confidence 9999999999998764 389999999999999999999999 9999999999999999999999999998765432
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
......|++.|+|||.+.+..++.++||||+|+++|||++|+.||...... . ..... ....
T Consensus 168 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~---~~~~~----------~~~~ 228 (284)
T 2vgo_A 168 ----RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT--E---THRRI----------VNVD 228 (284)
T ss_dssp ----CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--H---HHHHH----------HTTC
T ss_pred ----ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh--H---HHHHH----------hccc
Confidence 223457899999999999989999999999999999999999999643110 0 00000 0000
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
... +...+..+.+++.+|++.||++|||++|++++
T Consensus 229 ~~~----~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h 263 (284)
T 2vgo_A 229 LKF----PPFLSDGSKDLISKLLRYHPPQRLPLKGVMEH 263 (284)
T ss_dssp CCC----CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred cCC----CCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence 100 01123467899999999999999999999974
No 194
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=2.3e-37 Score=351.23 Aligned_cols=274 Identities=26% Similarity=0.336 Sum_probs=206.0
Q ss_pred HHhhCCceeeecCCccEEEEE----eCCCceEEEEEeccccc----ccHHHHHHHHhhcCCCCEEEEeeeee--cCCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTL----SNNSRKHWAVKKLNRSE----TNFDVEIRTLSLVRHRNILRIVGSCT--KDEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~----~~~~~~~vavK~~~~~~----~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~~ 903 (1119)
.+|+..+.||+|+||.||+|+ +..+++.||||++.... ..+.+|+.++++++||||+++++++. +....+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 466777999999999999998 46678999999986432 34789999999999999999999886 455689
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+||||+++++|.+++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 103 lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 177 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQRHRA--RLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKLL 177 (327)
T ss_dssp EEEECCTTCBHHHHHHHHGG--GCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEEC
T ss_pred EEEeecCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccceec
Confidence 99999999999999987542 489999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCC-CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 984 SDSHSS-STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 984 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
...... .......+|+.|+|||.+.+..++.++||||+|+++|||++|+.||.....+......... ...........
T Consensus 178 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 256 (327)
T 3lxl_A 178 PLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCER-DVPALSRLLEL 256 (327)
T ss_dssp CTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC-----CCHHHHHHHH
T ss_pred ccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhccccc-ccccHHHHHHH
Confidence 543221 1233456888899999998888999999999999999999999998642110000000000 00000000000
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCC
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEG 1115 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~ 1115 (1119)
+...... ..+...+..+.+++.+||+.||++|||++|++++|+++.....+
T Consensus 257 ~~~~~~~--~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~ 307 (327)
T 3lxl_A 257 LEEGQRL--PAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRG 307 (327)
T ss_dssp HHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC------
T ss_pred hhcccCC--CCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcC
Confidence 1111000 11122345788999999999999999999999999998776543
No 195
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1e-36 Score=345.88 Aligned_cols=260 Identities=25% Similarity=0.402 Sum_probs=207.3
Q ss_pred HHHHhhCCceeeecCCccEEEEEeCCCceEE--EEEeccc-----ccccHHHHHHHHhhc-CCCCEEEEeeeeecCCceE
Q 001226 832 DVIRATEGRIIGKGKHGTVYRTLSNNSRKHW--AVKKLNR-----SETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGF 903 (1119)
Q Consensus 832 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~v--avK~~~~-----~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 903 (1119)
+..+|+..+.||+|+||.||+|++..++..+ |+|+++. ....+.+|+.+++++ +||||+++++++.+++..+
T Consensus 23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~ 102 (327)
T 1fvr_A 23 DWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLY 102 (327)
T ss_dssp CGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEE
T ss_pred cHHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceE
Confidence 3356778899999999999999998878755 9998853 234588999999999 8999999999999999999
Q ss_pred EEEeccCCCCHHHhhccCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC
Q 001226 904 IVTEYMPGGTLFNVLHQNE-------------PRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL 970 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~ 970 (1119)
+||||+++++|.+++.... ....+++..++.++.|+++|++|||+. +|+||||||+||+++.++
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~ 179 (327)
T 1fvr_A 103 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENY 179 (327)
T ss_dssp EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGG
T ss_pred EEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCC
Confidence 9999999999999998653 123589999999999999999999999 999999999999999999
Q ss_pred ceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehh
Q 001226 971 EPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWT 1049 (1119)
Q Consensus 971 ~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~ 1049 (1119)
.+||+|||+++..... .......+++.|+|||.+.+..++.++||||+||++|||++ |+.||...... ...
T Consensus 180 ~~kL~Dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~-----~~~ 251 (327)
T 1fvr_A 180 VAKIADFGLSRGQEVY---VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA-----ELY 251 (327)
T ss_dssp CEEECCTTCEESSCEE---CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----HHH
T ss_pred eEEEcccCcCcccccc---ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHH-----HHH
Confidence 9999999998744321 12233457889999999988888999999999999999998 99998643110 000
Q ss_pred hhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCC
Q 001226 1050 RWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEG 1115 (1119)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~ 1115 (1119)
. ..... .... .+...+..+.+++.+||+.||++|||++|++++|+++.++...
T Consensus 252 ~-~~~~~------~~~~------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 304 (327)
T 1fvr_A 252 E-KLPQG------YRLE------KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT 304 (327)
T ss_dssp H-HGGGT------CCCC------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSSC
T ss_pred H-HhhcC------CCCC------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhcC
Confidence 0 00000 0000 0112235678999999999999999999999999998876543
No 196
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=3e-36 Score=338.35 Aligned_cols=247 Identities=21% Similarity=0.340 Sum_probs=201.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEecc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
.+|...+.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+.+++.++||||+++++++.+++..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 88 (304)
T 2jam_A 9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLV 88 (304)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcC
Confidence 4788889999999999999999999999999998643 345789999999999999999999999999999999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe---CCCCceEEEeccccccccCC
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL---DSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~vkl~DfGla~~~~~~ 986 (1119)
++++|.+++...+ .+++..+..++.|++.|+.|||+. +|+||||||+||++ +.++.+|++|||++......
T Consensus 89 ~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~ 162 (304)
T 2jam_A 89 SGGELFDRILERG---VYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG 162 (304)
T ss_dssp CSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB
T ss_pred CCccHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC
Confidence 9999999997654 489999999999999999999999 99999999999999 78899999999998754331
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
......||+.|+|||.+.+..++.++||||+|+++|||++|+.||..... ... .... . ...
T Consensus 163 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~--~~~i-~----------~~~ 223 (304)
T 2jam_A 163 ----IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE--SKL--FEKI-K----------EGY 223 (304)
T ss_dssp ----TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH--HHH--HHHH-H----------HCC
T ss_pred ----ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHH--HHHH-H----------cCC
Confidence 22345689999999999999999999999999999999999999864311 000 0000 0 000
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...........+..+.+++.+|++.||++|||++|++++
T Consensus 224 ~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (304)
T 2jam_A 224 YEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSH 262 (304)
T ss_dssp CCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred CCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 000000011224567899999999999999999999875
No 197
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=2.9e-36 Score=346.86 Aligned_cols=248 Identities=24% Similarity=0.393 Sum_probs=200.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------------ccHHHHHHHHhhc-CCCCEEEEeeeeecCC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------------TNFDVEIRTLSLV-RHRNILRIVGSCTKDE 900 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------------~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 900 (1119)
.+|...+.||+|+||.||+|.+..+|+.||||+++... ..+.+|+.+++.+ +||||+++++++...+
T Consensus 94 ~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 173 (365)
T 2y7j_A 94 QKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSS 173 (365)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSS
T ss_pred hhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCC
Confidence 35777899999999999999999889999999885322 3467899999999 7999999999999999
Q ss_pred ceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccc
Q 001226 901 HGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMS 980 (1119)
Q Consensus 901 ~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla 980 (1119)
..|+||||+++++|.+++.... .+++..+..++.|++.|+.|||+. ||+||||||+||+++.++.+|++|||++
T Consensus 174 ~~~lv~e~~~g~~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ikl~DfG~~ 247 (365)
T 2y7j_A 174 FMFLVFDLMRKGELFDYLTEKV---ALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSDFGFS 247 (365)
T ss_dssp EEEEEECCCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred EEEEEEEeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEecCcc
Confidence 9999999999999999998654 489999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCCCcccccccCCCcccccccC------CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhc
Q 001226 981 KLISDSHSSSTRSAIVGSLGYIAPENAY------STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQ 1054 (1119)
Q Consensus 981 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1054 (1119)
....... ......||+.|+|||++. ...++.++||||+||++|||++|+.||.... ... ......
T Consensus 248 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~----~~~-~~~~i~- 318 (365)
T 2y7j_A 248 CHLEPGE---KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR----QIL-MLRMIM- 318 (365)
T ss_dssp EECCTTC---CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSS----HHH-HHHHHH-
T ss_pred cccCCCc---ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCC----HHH-HHHHHH-
Confidence 8765422 233467899999999775 3358899999999999999999999996421 100 000000
Q ss_pred ccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1055 ENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..............+..+.+++.+||+.||++|||++|++++
T Consensus 319 ---------~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 360 (365)
T 2y7j_A 319 ---------EGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQH 360 (365)
T ss_dssp ---------HTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred ---------hCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 000000000001223467899999999999999999999975
No 198
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=8.8e-36 Score=352.68 Aligned_cols=264 Identities=17% Similarity=0.238 Sum_probs=208.8
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecc--cccccHHHHHHHHhhcCC-CCEEEEeeeeecCCceEEEEeccCC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLN--RSETNFDVEIRTLSLVRH-RNILRIVGSCTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~--~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lV~e~~~~ 911 (1119)
+|...++||+|+||.||+|.+..+++.||||+++ ....++.+|+++++.++| +++..+..++.+.+..++||||+ +
T Consensus 8 ~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g 86 (483)
T 3sv0_A 8 KFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-G 86 (483)
T ss_dssp TEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-C
T ss_pred cEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-C
Confidence 5777899999999999999999999999999874 344678999999999986 55666666677788889999999 9
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe---CCCCceEEEeccccccccCCCC
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL---DSELEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~vkl~DfGla~~~~~~~~ 988 (1119)
++|.+++..... .+++..++.++.||+.||+|||+. +||||||||+|||+ +.++.+||+|||+++.......
T Consensus 87 ~sL~~ll~~~~~--~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~ 161 (483)
T 3sv0_A 87 PSLEDLFNFCSR--KLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTST 161 (483)
T ss_dssp CBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTT
T ss_pred CCHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcc
Confidence 999999986543 489999999999999999999999 99999999999999 5889999999999987755332
Q ss_pred C-----CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 989 S-----STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 989 ~-----~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
. .......||+.|+|||.+.+..++.++|||||||++|||++|+.||......... ..+...... .....+
T Consensus 162 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~-~~~~~i~~~---~~~~~~ 237 (483)
T 3sv0_A 162 HQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKK-QKYEKISEK---KVATSI 237 (483)
T ss_dssp CCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHH-HHHHHHHHH---HHHSCH
T ss_pred ccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHH-HHHHHHhhc---cccccH
Confidence 1 2233567999999999999999999999999999999999999999764322111 000000000 000000
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCC
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEG 1115 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~ 1115 (1119)
.. .....+.++.+++.+||+.+|++||++++|++.|+++..+.+.
T Consensus 238 ~~-------l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~~~ 282 (483)
T 3sv0_A 238 EA-------LCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGF 282 (483)
T ss_dssp HH-------HHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred HH-------HhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHcCC
Confidence 00 0011245789999999999999999999999999998766543
No 199
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=1.1e-36 Score=345.73 Aligned_cols=264 Identities=19% Similarity=0.252 Sum_probs=193.7
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
+.+|+..+.||+|+||+||+|.+..+++.||||+++.. ...+.+|+.+++.++||||+++++++.+++..++||
T Consensus 33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 112 (329)
T 3gbz_A 33 IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIF 112 (329)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEE
Confidence 35788889999999999999999999999999998532 234678999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe-----CCCCceEEEeccccc
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL-----DSELEPKIGDFGMSK 981 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill-----~~~~~vkl~DfGla~ 981 (1119)
||++ |+|.+++.... .+++..++.++.|++.|++|||+. +|+||||||+||++ +..+.+||+|||+++
T Consensus 113 e~~~-~~L~~~~~~~~---~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~ 185 (329)
T 3gbz_A 113 EYAE-NDLKKYMDKNP---DVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR 185 (329)
T ss_dssp ECCS-EEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTHHH
T ss_pred ecCC-CCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCCcc
Confidence 9997 59999998765 389999999999999999999999 99999999999999 455669999999998
Q ss_pred cccCCCCCCcccccccCCCcccccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccc
Q 001226 982 LISDSHSSSTRSAIVGSLGYIAPENAYST-RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECI 1060 (1119)
Q Consensus 982 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1119)
...... .......+|+.|+|||.+.+. .++.++||||+||++|||++|+.||......+..................
T Consensus 186 ~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (329)
T 3gbz_A 186 AFGIPI--RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWP 263 (329)
T ss_dssp HHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTST
T ss_pred ccCCcc--cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhh
Confidence 764321 223345689999999988774 58999999999999999999999996532111000000000000000000
Q ss_pred c-----cccccccCCCch------HHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1061 C-----FLDREISFWDSD------DQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1061 ~-----~~~~~~~~~~~~------~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
. ............ ....+.++.+++.+||+.||++|||++|+++|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 319 (329)
T 3gbz_A 264 GVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEH 319 (329)
T ss_dssp TGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred hhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCC
Confidence 0 000000000000 01124577899999999999999999999875
No 200
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=3.9e-36 Score=360.56 Aligned_cols=247 Identities=26% Similarity=0.353 Sum_probs=197.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
.+|+..+.||+|+||+||+|+++.++..||+|+++.. ...+.+|+.+++.++||||+++++++.+.+..|+|||
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 116 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME 116 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence 4788889999999999999999999999999998532 3457899999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC---CceEEEecccccccc
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE---LEPKIGDFGMSKLIS 984 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~---~~vkl~DfGla~~~~ 984 (1119)
|+++|+|.+++.... .+++..+..++.||++|++|||+. +|+||||||+||+++.. +.+||+|||+++...
T Consensus 117 ~~~~g~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~ 190 (494)
T 3lij_A 117 CYKGGELFDEIIHRM---KFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFE 190 (494)
T ss_dssp CCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEECB
T ss_pred cCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeECC
Confidence 999999999887654 489999999999999999999999 99999999999999764 459999999998765
Q ss_pred CCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
.. .......||+.|+|||++. +.++.++||||+||++|+|++|+.||..... ... ..... .
T Consensus 191 ~~---~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~---~~~i~----------~ 251 (494)
T 3lij_A 191 NQ---KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTD--QEI---LRKVE----------K 251 (494)
T ss_dssp TT---BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHH---HHHHH----------H
T ss_pred CC---ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCH--HHH---HHHHH----------h
Confidence 42 2234457999999999875 5689999999999999999999999964311 110 00000 0
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.............+..+.+++.+||+.||++|||++|+++|
T Consensus 252 ~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 252 GKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp TCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred CCCCCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence 00000001111234567899999999999999999999875
No 201
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=2.2e-36 Score=337.72 Aligned_cols=245 Identities=26% Similarity=0.409 Sum_probs=202.5
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|++... .+.+.+|+.+++.++||||+++++++.+++..++||
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 94 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 94 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence 3577789999999999999999999999999988532 245778999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+++++|.+++.... .+++..+..++.|+++|++|||+. +++||||||+||+++.++.+||+|||.+......
T Consensus 95 e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 168 (294)
T 2rku_A 95 ELCRRRSLLELHKRRK---ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 168 (294)
T ss_dssp ECCTTCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred ecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence 9999999999987654 489999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
. .......+|+.|+|||.+.+..++.++||||+|+++|||++|+.||...... ..+.... ...
T Consensus 169 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~----~~~~~~~-----------~~~ 231 (294)
T 2rku_A 169 G--ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK----ETYLRIK-----------KNE 231 (294)
T ss_dssp T--CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH----HHHHHHH-----------TTC
T ss_pred c--cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH----HHHHHHh-----------hcc
Confidence 2 2233457899999999998888999999999999999999999999643111 0000000 000
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
... +...+..+.+++.+||+.||++|||++|++++
T Consensus 232 ~~~----~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 232 YSI----PKHINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp CCC----CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred CCC----ccccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 000 01123467899999999999999999999985
No 202
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=1.7e-36 Score=363.32 Aligned_cols=247 Identities=27% Similarity=0.374 Sum_probs=202.1
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccc-------ccccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR-------SETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~-------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..++||+|+||.||+|.++.+++.||||++.. ....+.+|+.+++.++||||+++++++.+.+..|+||
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 105 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG 105 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 478888999999999999999999999999999842 2345789999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe---CCCCceEEEeccccccc
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL---DSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~vkl~DfGla~~~ 983 (1119)
||+++|+|.+++.... .+++..+..++.|++.|+.|||+. +|+||||||+||++ +.++.+||+|||+++..
T Consensus 106 e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~ 179 (484)
T 3nyv_A 106 EVYTGGELFDEIISRK---RFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHF 179 (484)
T ss_dssp CCCCSCBHHHHHHTCS---CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHB
T ss_pred ecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEc
Confidence 9999999999997654 489999999999999999999999 99999999999999 56789999999999876
Q ss_pred cCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 984 SDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 984 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
... .......||+.|+|||.+.+ .++.++||||+||++|||++|+.||..... .... ....
T Consensus 180 ~~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~---~~i~---------- 240 (484)
T 3nyv_A 180 EAS---KKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANE--YDIL---KKVE---------- 240 (484)
T ss_dssp CCC---CSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHH---HHHH----------
T ss_pred ccc---cccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCH--HHHH---HHHH----------
Confidence 442 22344579999999998765 689999999999999999999999974311 0000 0000
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..............+..+.+++.+||+.||++|||++|+++|
T Consensus 241 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 282 (484)
T 3nyv_A 241 KGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDH 282 (484)
T ss_dssp HCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred cCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence 000111111112234567899999999999999999999975
No 203
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=9.9e-37 Score=353.68 Aligned_cols=246 Identities=22% Similarity=0.346 Sum_probs=191.3
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcC--CCCEEEEeeeeecCCceEEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVR--HRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lV~ 906 (1119)
+|+..+.||+|+||.||+|.+.. ++.||||++... ...+.+|+.+++.++ ||||+++++++..++..|+||
T Consensus 57 ~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 57 IYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred ceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 47777999999999999999876 889999988532 245788999999996 599999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
| +.+++|.+++.... .+++..+..++.||+.||.|||+. +|+||||||+||+++ ++.+||+|||+++.....
T Consensus 136 E-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~ 207 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 207 (390)
T ss_dssp E-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred e-cCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence 9 56889999998765 488999999999999999999999 999999999999995 589999999999877543
Q ss_pred CCCCcccccccCCCcccccccCC-----------CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYS-----------TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
..........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ....
T Consensus 208 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~---~~~~------- 277 (390)
T 2zmd_A 208 TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ---ISKL------- 277 (390)
T ss_dssp ------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCH---HHHH-------
T ss_pred CccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHH---HHHH-------
Confidence 33333445679999999998754 46889999999999999999999999643111 0000
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1056 NHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...++....... +...+..+.+++.+||+.||++|||++|++++
T Consensus 278 ----~~~~~~~~~~~~--~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 278 ----HAIIDPNHEIEF--PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp ----HHHHCTTSCCCC--CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ----HHHhCccccCCC--CccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 011111110000 00013467899999999999999999999976
No 204
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.7e-37 Score=349.63 Aligned_cols=247 Identities=22% Similarity=0.356 Sum_probs=189.6
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCC--CCEEEEeeeeecCCceEEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRH--RNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lV~ 906 (1119)
+|+..+.||+|+||.||+|.+.. ++.||||++.... ..+.+|+.+++.++| |||+++++++.+++..++||
T Consensus 10 ~y~i~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 88 (343)
T 3dbq_A 10 IYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 88 (343)
T ss_dssp EEEEEEEESCCSSEEEEEEECTT-SCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred EEEEEEEEecCCCeEEEEEEeCC-CCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence 46667899999999999998854 8899999885322 457789999999986 99999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
|+ .+++|.+++.... .+++..+..++.|+++|+.|||+. +|+||||||+||+++ ++.+||+|||+++.....
T Consensus 89 e~-~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~ 160 (343)
T 3dbq_A 89 EC-GNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 160 (343)
T ss_dssp CC-CSEEHHHHHHHSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC---
T ss_pred eC-CCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCcc
Confidence 94 5889999998765 489999999999999999999999 999999999999997 678999999999877554
Q ss_pred CCCCcccccccCCCcccccccCC-----------CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYS-----------TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
..........||+.|+|||.+.+ ..++.++||||+||++|||++|+.||...... .....
T Consensus 161 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~~~~------ 231 (343)
T 3dbq_A 161 TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ---ISKLH------ 231 (343)
T ss_dssp ---------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH---HHHHH------
T ss_pred cccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH---HHHHH------
Confidence 33333445679999999998753 67889999999999999999999999643111 00000
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 001226 1056 NHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFL 1106 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L 1106 (1119)
..+++..... .+...+..+.+++.+||+.||++|||++|++++-
T Consensus 232 -----~~~~~~~~~~--~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp 275 (343)
T 3dbq_A 232 -----AIIDPNHEIE--FPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHP 275 (343)
T ss_dssp -----HHHCTTSCCC--CCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred -----HHhcCCcccC--CcccCCHHHHHHHHHHcCCChhHCCCHHHHHhCc
Confidence 0111111000 0001124678999999999999999999999873
No 205
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=1.6e-36 Score=346.23 Aligned_cols=245 Identities=26% Similarity=0.380 Sum_probs=197.9
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..+.||+|+||.||+|++..+++.||||++.... ..+.+|+++++.++||||+++++++.+++..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 45777799999999999999999999999999985321 35778999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||++ |++.+++..... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 134 e~~~-g~l~~~l~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~- 206 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHKK--PLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP- 206 (348)
T ss_dssp ECCS-EEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS-
T ss_pred ecCC-CCHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCC-
Confidence 9997 688888865432 489999999999999999999999 999999999999999999999999999976543
Q ss_pred CCCCcccccccCCCcccccccC---CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAY---STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
.....||+.|+|||.+. ...++.++||||+||++|||++|+.||...... ..........
T Consensus 207 -----~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~----~~~~~~~~~~-------- 269 (348)
T 1u5q_A 207 -----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM----SALYHIAQNE-------- 269 (348)
T ss_dssp -----BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHHHHHHSC--------
T ss_pred -----CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH----HHHHHHHhcC--------
Confidence 22357899999999874 567899999999999999999999998643110 0000000000
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHH
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLI 1107 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~ 1107 (1119)
.+... ....+..+.+++.+||+.||++|||+++++++--
T Consensus 270 ~~~~~-----~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~ 308 (348)
T 1u5q_A 270 SPALQ-----SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRF 308 (348)
T ss_dssp CCCCC-----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHH
T ss_pred CCCCC-----CCCCCHHHHHHHHHHcccChhhCcCHHHHhhChh
Confidence 00000 0112346789999999999999999999987643
No 206
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=1.1e-36 Score=345.62 Aligned_cols=258 Identities=27% Similarity=0.388 Sum_probs=200.9
Q ss_pred HHhhCCceeeecCCccEEEEE-----eCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTL-----SNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~-----~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 903 (1119)
.+|+..+.||+|+||.||+|. ...+++.||||++... ...+.+|+.+++.++||||+++++++.+++..|
T Consensus 30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (327)
T 2yfx_A 30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF 109 (327)
T ss_dssp GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcE
Confidence 467778999999999999998 4456789999998532 245778999999999999999999999999999
Q ss_pred EEEeccCCCCHHHhhccCCC----CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC---CceEEEe
Q 001226 904 IVTEYMPGGTLFNVLHQNEP----RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE---LEPKIGD 976 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~---~~vkl~D 976 (1119)
+||||+++++|.+++..... ...+++..++.++.|++.|+.|||+. +|+||||||+||+++.+ ..+||+|
T Consensus 110 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~D 186 (327)
T 2yfx_A 110 ILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGD 186 (327)
T ss_dssp EEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred EEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEECc
Confidence 99999999999999987542 13588999999999999999999999 99999999999999944 4699999
Q ss_pred ccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcc
Q 001226 977 FGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 977 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
||+++...............+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||..... ... .......
T Consensus 187 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~---~~~~~~~ 261 (327)
T 2yfx_A 187 FGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEV---LEFVTSG 261 (327)
T ss_dssp CHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHH---HHHHHTT
T ss_pred cccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH--HHH---HHHHhcC
Confidence 999986654433334445578999999999988889999999999999999998 9999864311 010 0000000
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1056 NHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
. ... .+...+..+.+++.+||+.||++||++++++++++.+.+.
T Consensus 262 -~------~~~------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 262 -G------RMD------PPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp -C------CCC------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -C------CCC------CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 0 000 0112234678999999999999999999999999988654
No 207
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=8.5e-36 Score=351.00 Aligned_cols=195 Identities=28% Similarity=0.370 Sum_probs=165.4
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecC-----CceE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKD-----EHGF 903 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~~ 903 (1119)
+|+..+.||+|+||.||+|.+..+++.||||+++.. ...+.+|+++++.++||||+++++++... ...|
T Consensus 27 ~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 106 (432)
T 3n9x_A 27 NYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELY 106 (432)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEE
T ss_pred CEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEE
Confidence 577789999999999999999999999999998642 23577899999999999999999999766 5689
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+||||++ ++|.++++... .+++..+..++.||++|++|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 107 lv~e~~~-~~L~~~~~~~~---~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~~~ 179 (432)
T 3n9x_A 107 IVLEIAD-SDLKKLFKTPI---FLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLARTI 179 (432)
T ss_dssp EEEECCS-EEHHHHHHSSC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEecCC-cCHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCcccc
Confidence 9999996 69999998654 489999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCC--------------------CcccccccCCCccccccc-CCCCCCCcchHHHHHHHHHHHHhCCCCCC
Q 001226 984 SDSHSS--------------------STRSAIVGSLGYIAPENA-YSTRLTEKSDVYSYGVILFELLFRKMPVD 1036 (1119)
Q Consensus 984 ~~~~~~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~sDvwslG~vl~elltg~~p~~ 1036 (1119)
...... ......+||++|+|||.+ ....++.++||||+||++|||++|..||.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 180 NSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp -------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred cccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 543211 123456899999999985 56679999999999999999998766654
No 208
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.2e-36 Score=336.42 Aligned_cols=254 Identities=24% Similarity=0.347 Sum_probs=203.5
Q ss_pred ceeeecCCccEEEEEeC--CCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCCC
Q 001226 840 RIIGKGKHGTVYRTLSN--NSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPGG 912 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~--~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~g 912 (1119)
+.||+|+||.||+|.+. .++..||||+++.. ...+.+|+.+++.++||||+++++++ ..+..++||||++++
T Consensus 16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~ 94 (287)
T 1u59_A 16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGG 94 (287)
T ss_dssp EEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEEECCTTE
T ss_pred ccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEEEeCCCC
Confidence 48999999999999864 45788999998653 24577899999999999999999999 556789999999999
Q ss_pred CHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCC-Cc
Q 001226 913 TLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSS-ST 991 (1119)
Q Consensus 913 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~-~~ 991 (1119)
+|.+++..... .+++..+..++.|+++|+.|||+. +|+||||||+||+++.++.+||+|||+++........ ..
T Consensus 95 ~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~ 169 (287)
T 1u59_A 95 PLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTA 169 (287)
T ss_dssp EHHHHHTTCTT--TSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECC
T ss_pred CHHHHHHhCCc--cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeec
Confidence 99999975432 489999999999999999999999 9999999999999999999999999999876543221 22
Q ss_pred ccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccCC
Q 001226 992 RSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFW 1070 (1119)
Q Consensus 992 ~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1119)
.....+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... ... ...... . ....
T Consensus 170 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~---~~i~~~-~------~~~~--- 234 (287)
T 1u59_A 170 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVM---AFIEQG-K------RMEC--- 234 (287)
T ss_dssp CCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHH---HHHHTT-C------CCCC---
T ss_pred cccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH--HHH---HHHhcC-C------cCCC---
Confidence 233456889999999888889999999999999999998 99998653211 111 000000 0 0000
Q ss_pred CchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCCC
Q 001226 1071 DSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGGM 1117 (1119)
Q Consensus 1071 ~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~~ 1117 (1119)
+...+..+.+++.+||+.||++||++++++++|+++..+.+.+.
T Consensus 235 ---~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~ 278 (287)
T 1u59_A 235 ---PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKV 278 (287)
T ss_dssp ---CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTC
T ss_pred ---CCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcc
Confidence 11234578899999999999999999999999999987766553
No 209
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=3e-36 Score=341.82 Aligned_cols=249 Identities=22% Similarity=0.340 Sum_probs=197.2
Q ss_pred HhhCC-ceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcC-CCCEEEEeeeeecCCceEEEE
Q 001226 835 RATEG-RIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVR-HRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 835 ~~~~~-~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~ 906 (1119)
+|... +.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+.+++.++ ||||+++++++.+++..++||
T Consensus 29 ~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~ 108 (327)
T 3lm5_A 29 FYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILIL 108 (327)
T ss_dssp HEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred EEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEE
Confidence 44444 8899999999999999999999999988532 245788999999985 699999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC---CCceEEEeccccccc
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS---ELEPKIGDFGMSKLI 983 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---~~~vkl~DfGla~~~ 983 (1119)
||+++|+|.+++.... ...+++..++.++.|++.|++|||+. +|+||||||+||+++. ++.+||+|||+++..
T Consensus 109 e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~ 184 (327)
T 3lm5_A 109 EYAAGGEIFSLCLPEL-AEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKI 184 (327)
T ss_dssp ECCTTEEGGGGGSSCC--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC
T ss_pred EecCCCcHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEeeCcccccc
Confidence 9999999999986543 23589999999999999999999999 9999999999999998 789999999999876
Q ss_pred cCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 984 SDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 984 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
.... ......||+.|+|||.+.+..++.++||||+||++|||++|+.||...... ........ .
T Consensus 185 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~----~~~~~i~~-~-------- 248 (327)
T 3lm5_A 185 GHAC---ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQ----ETYLNISQ-V-------- 248 (327)
T ss_dssp ------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH----HHHHHHHH-T--------
T ss_pred CCcc---ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch----HHHHHHHh-c--------
Confidence 5422 223457899999999999999999999999999999999999999643111 00000000 0
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
............+..+.+++.+||+.||++|||++|++++
T Consensus 249 --~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h 288 (327)
T 3lm5_A 249 --NVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH 288 (327)
T ss_dssp --CCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred --ccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence 0000000111234567899999999999999999999886
No 210
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=3.3e-36 Score=335.59 Aligned_cols=243 Identities=28% Similarity=0.401 Sum_probs=193.9
Q ss_pred hhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeec----CCceEEE
Q 001226 836 ATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTK----DEHGFIV 905 (1119)
Q Consensus 836 ~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lV 905 (1119)
|...+.||+|+||.||+|.+..++..||+|++... ...+.+|+.+++.++||||+++++++.. +...++|
T Consensus 28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv 107 (290)
T 1t4h_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence 44557899999999999999999999999988532 2347789999999999999999998865 3567999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCCeEeC-CCCceEEEecccccc
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQ--IIHRDIKSDNILLD-SELEPKIGDFGMSKL 982 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~Nill~-~~~~vkl~DfGla~~ 982 (1119)
|||+++++|.+++.... .+++..+..++.|++.|+.|||+. + |+||||||+||+++ .++.+||+|||++..
T Consensus 108 ~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~ 181 (290)
T 1t4h_A 108 TELMTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 181 (290)
T ss_dssp EECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred EEecCCCCHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence 99999999999998754 488999999999999999999998 7 99999999999998 789999999999975
Q ss_pred ccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 983 ISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 983 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
.... ......||+.|+|||.+. +.++.++||||+|+++|||++|+.||....... ......... ..
T Consensus 182 ~~~~----~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~----~~~~~~~~~-~~---- 247 (290)
T 1t4h_A 182 KRAS----FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAA----QIYRRVTSG-VK---- 247 (290)
T ss_dssp CCTT----SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH----HHHHHHTTT-CC----
T ss_pred cccc----ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHH----HHHHHHhcc-CC----
Confidence 4332 223456899999999776 458999999999999999999999996432111 110000000 00
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
... .+...+..+.+++.+||+.||++|||++|++++
T Consensus 248 -~~~------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 283 (290)
T 1t4h_A 248 -PAS------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp -CGG------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred -ccc------cCCCCCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence 000 011112467899999999999999999999875
No 211
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.9e-36 Score=337.60 Aligned_cols=254 Identities=23% Similarity=0.311 Sum_probs=201.4
Q ss_pred HHhhCCc-eeeecCCccEEEEEe--CCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEE
Q 001226 834 IRATEGR-IIGKGKHGTVYRTLS--NNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 834 ~~~~~~~-~lG~G~fg~Vy~~~~--~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 904 (1119)
.+|+..+ .||+|+||.||+|.+ ..+++.||||+++.. ...+.+|+.+++.++||||+++++++ +.+..++
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~l 94 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWML 94 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEE
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEE
Confidence 3556555 899999999999954 566789999998643 34578899999999999999999999 5677899
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
||||+++++|.+++.... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 95 v~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 168 (291)
T 1xbb_A 95 VMEMAELGPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALR 168 (291)
T ss_dssp EEECCTTEEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEeCCCCCHHHHHHhCc---CCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceeec
Confidence 999999999999998754 389999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCC-CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 985 DSHSS-STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 985 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
..... .......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||...... ... .... ...
T Consensus 169 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~---~~~~-~~~----- 237 (291)
T 1xbb_A 169 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVT---AMLE-KGE----- 237 (291)
T ss_dssp TTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHH---HHHH-TTC-----
T ss_pred cCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHH---HHHH-cCC-----
Confidence 43221 12223456789999999988888999999999999999999 99998653211 100 0000 000
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
... .+...+..+.+++.+||+.||++||+++++++.|+++...
T Consensus 238 -~~~------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~ 280 (291)
T 1xbb_A 238 -RMG------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 280 (291)
T ss_dssp -CCC------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred -CCC------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 000 0112345788999999999999999999999999988654
No 212
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.6e-36 Score=347.90 Aligned_cols=251 Identities=23% Similarity=0.296 Sum_probs=199.7
Q ss_pred HHhhCCceeeecCCccEEEEEeC---CCceEEEEEecccc--------cccHHHHHHHHhhc-CCCCEEEEeeeeecCCc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSN---NSRKHWAVKKLNRS--------ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEH 901 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~---~~~~~vavK~~~~~--------~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 901 (1119)
.+|+..+.||+|+||.||+|++. .+++.||||+++.. ...+.+|+.+++.+ +||||+++++++..++.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 56788899999999999999984 47899999998532 24467799999999 69999999999999999
Q ss_pred eEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 902 GFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 902 ~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
.++||||+++++|.+++.... .+++..+..++.|+++||.|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 207 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQRE---RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSK 207 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred EEEEeecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCe
Confidence 999999999999999998754 489999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCCCcccccccCCCcccccccCC--CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccc
Q 001226 982 LISDSHSSSTRSAIVGSLGYIAPENAYS--TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHEC 1059 (1119)
Q Consensus 982 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1119)
...... ........||+.|+|||.+.+ ..++.++||||+||++|||++|+.||........ ............
T Consensus 208 ~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~-~~~~~~~~~~~~--- 282 (355)
T 1vzo_A 208 EFVADE-TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS-QAEISRRILKSE--- 282 (355)
T ss_dssp ECCGGG-GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCC-HHHHHHHHHHCC---
T ss_pred ecccCC-CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccch-HHHHHHHHhccC---
Confidence 654322 122334579999999999875 3478999999999999999999999975322111 111111110000
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHHH
Q 001226 1060 ICFLDREISFWDSDDQLKALRLLELALECTRQVADMRP-----SMREVVGFL 1106 (1119)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----s~~ell~~L 1106 (1119)
+.. +...+..+.+++.+||+.||++|| +++|++++.
T Consensus 283 -----~~~------~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~ 323 (355)
T 1vzo_A 283 -----PPY------PQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL 323 (355)
T ss_dssp -----CCC------CTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred -----CCC------CcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence 001 112234678999999999999999 999998864
No 213
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=9.3e-37 Score=357.58 Aligned_cols=263 Identities=24% Similarity=0.272 Sum_probs=195.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccccccHHHHHHHHhhcCCCCEEEEeeeeecC------CceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTLSLVRHRNILRIVGSCTKD------EHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~~~lV~e~ 908 (1119)
+|+..+.||+|+||.||+|++..+++.||||++........+|+.+++.++||||+++++++... ...++||||
T Consensus 55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~ 134 (420)
T 1j1b_A 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDY 134 (420)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhc
Confidence 46677999999999999999999999999999977666677899999999999999999988532 235799999
Q ss_pred cCCCCHHHhhccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC-CceEEEeccccccccCC
Q 001226 909 MPGGTLFNVLHQN-EPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE-LEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 909 ~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~-~~vkl~DfGla~~~~~~ 986 (1119)
+++ ++.+.+... .....+++..+..++.||++||+|||+. +|+||||||+||+++.+ +.+||+|||+++.....
T Consensus 135 ~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~ 210 (420)
T 1j1b_A 135 VPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 210 (420)
T ss_dssp CCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred ccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhhhcccC
Confidence 975 666665431 1123589999999999999999999999 99999999999999965 56899999999876442
Q ss_pred CCCCcccccccCCCcccccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhh--------cccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYST-RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKL--------QENH 1057 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~--------~~~~ 1057 (1119)
. ......+|+.|+|||++.+. .++.++||||+||++|||++|+.||......+ .+........ ....
T Consensus 211 ~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~-~l~~i~~~lg~p~~~~~~~~~~ 286 (420)
T 1j1b_A 211 E---PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVD-QLVEIIKVLGTPTREQIREMNP 286 (420)
T ss_dssp C---CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCSCCHHHHHHHCS
T ss_pred C---CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHHHhhCh
Confidence 2 22345789999999988764 78999999999999999999999997532111 1111000000 0000
Q ss_pred cccccccccccCCCc---hHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1058 ECICFLDREISFWDS---DDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1058 ~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
....+.-+.+....- .....+.++.+++.+||+.||++|||+.|+++|
T Consensus 287 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h 337 (420)
T 1j1b_A 287 NYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH 337 (420)
T ss_dssp CCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence 000000000000000 001224578899999999999999999999975
No 214
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=2.3e-36 Score=343.93 Aligned_cols=245 Identities=25% Similarity=0.403 Sum_probs=202.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|...+.||+|+||.||++.+..+++.||+|++... ...+.+|+.+++.++||||+++++++.+++..|+||
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 120 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 120 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 3677789999999999999999999999999998533 245778999999999999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+++++|.+++.... .+++..+..++.|+++|+.|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 121 e~~~~~~L~~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 194 (335)
T 2owb_A 121 ELCRRRSLLELHKRRK---ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 194 (335)
T ss_dssp CCCTTCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred ecCCCCCHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecccC
Confidence 9999999999987654 489999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
. .......||+.|+|||.+.+..++.++||||+|+++|||++|+.||...... ..+..... ... .
T Consensus 195 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~----~~~~~~~~-~~~--------~ 259 (335)
T 2owb_A 195 G--ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK----ETYLRIKK-NEY--------S 259 (335)
T ss_dssp T--CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH----HHHHHHHH-TCC--------C
T ss_pred c--ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHH----HHHHHHhc-CCC--------C
Confidence 2 2233457899999999998888999999999999999999999999643110 00000000 000 0
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
+. ......+.+++.+||+.||++|||++|++++
T Consensus 260 ~~------~~~~~~~~~li~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 260 IP------KHINPVAASLIQKMLQTDPTARPTINELLND 292 (335)
T ss_dssp CC------TTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred CC------ccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 00 1123467899999999999999999999975
No 215
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=4.1e-36 Score=361.28 Aligned_cols=247 Identities=29% Similarity=0.355 Sum_probs=199.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----------------cccHHHHHHHHhhcCCCCEEEEeeee
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----------------ETNFDVEIRTLSLVRHRNILRIVGSC 896 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----------------~~~~~~E~~~l~~l~h~niv~l~~~~ 896 (1119)
.+|+..++||+|+||+||+|.++.+++.||+|+++.. ...+.+|+.+++.++||||+++++++
T Consensus 36 ~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~ 115 (504)
T 3q5i_A 36 ESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVF 115 (504)
T ss_dssp GTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred cceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 3677789999999999999999999999999998532 23577899999999999999999999
Q ss_pred ecCCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC---ceE
Q 001226 897 TKDEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL---EPK 973 (1119)
Q Consensus 897 ~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~---~vk 973 (1119)
.+++..|+||||+++|+|.+++.... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++ .+|
T Consensus 116 ~~~~~~~lv~e~~~gg~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~k 189 (504)
T 3q5i_A 116 EDKKYFYLVTEFYEGGELFEQIINRH---KFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIK 189 (504)
T ss_dssp ECSSEEEEEEECCTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSSEE
T ss_pred EcCCEEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCccEE
Confidence 99999999999999999999997754 489999999999999999999999 999999999999998876 699
Q ss_pred EEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhh
Q 001226 974 IGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKL 1053 (1119)
Q Consensus 974 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 1053 (1119)
|+|||+++..... .......||+.|+|||.+. +.++.++||||+||++|+|++|+.||..... ... ....
T Consensus 190 l~Dfg~a~~~~~~---~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~---~~~i- 259 (504)
T 3q5i_A 190 IVDFGLSSFFSKD---YKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQND--QDI---IKKV- 259 (504)
T ss_dssp ECCCTTCEECCTT---SCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHH---HHHH-
T ss_pred EEECCCCEEcCCC---CccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCH--HHH---HHHH-
Confidence 9999999876542 2233457999999999876 5689999999999999999999999975311 110 0000
Q ss_pred cccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1054 QENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...............+..+.+++.+||+.||.+|||++|++++
T Consensus 260 ---------~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 260 ---------EKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp ---------HHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ---------HcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 0000000000111234578899999999999999999999876
No 216
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=367.74 Aligned_cols=252 Identities=23% Similarity=0.351 Sum_probs=198.4
Q ss_pred eeeecCCccEEEEEeC--CCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCCCC
Q 001226 841 IIGKGKHGTVYRTLSN--NSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPGGT 913 (1119)
Q Consensus 841 ~lG~G~fg~Vy~~~~~--~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~gs 913 (1119)
.||+|+||.||+|.++ .++..||||+++.. ..++.+|+++++.++|||||++++++.. +..++||||+++|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~ 421 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP 421 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence 7999999999999875 34678999998642 3468899999999999999999999976 56899999999999
Q ss_pred HHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCC-CCcc
Q 001226 914 LFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHS-SSTR 992 (1119)
Q Consensus 914 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~-~~~~ 992 (1119)
|.+++.... ..+++..+..++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++....... ....
T Consensus 422 L~~~l~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~ 496 (613)
T 2ozo_A 422 LHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR 496 (613)
T ss_dssp HHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC---------
T ss_pred HHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeec
Confidence 999997653 2589999999999999999999999 999999999999999999999999999987654322 1122
Q ss_pred cccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccCCC
Q 001226 993 SAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFWD 1071 (1119)
Q Consensus 993 ~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1119)
....+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... +..... .... ...
T Consensus 497 ~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i----~~~~--------~~~--- 559 (613)
T 2ozo_A 497 SAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFI----EQGK--------RME--- 559 (613)
T ss_dssp -----CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH--HHHHHH----HTTC--------CCC---
T ss_pred cCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHH----HcCC--------CCC---
Confidence 23346789999999988899999999999999999998 99999754221 111100 0000 000
Q ss_pred chHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1072 SDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1072 ~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
.+...+..+.+++.+||+.+|++||++++|++.|+.+....+.+
T Consensus 560 -~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~~ 603 (613)
T 2ozo_A 560 -CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASK 603 (613)
T ss_dssp -CCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSCS
T ss_pred -CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhccc
Confidence 01123457889999999999999999999999999876655443
No 217
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=343.55 Aligned_cols=264 Identities=23% Similarity=0.335 Sum_probs=204.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeec----CCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTK----DEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||++... ...+.+|+.+++.++||||+++++++.. ....++|
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv 108 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLL 108 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEE
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEE
Confidence 3577779999999999999999999999999988432 3457889999999999999999999863 3467999
Q ss_pred EeccCCCCHHHhhccCC-CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 906 TEYMPGGTLFNVLHQNE-PRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
|||+++|+|.+++.... ....+++..++.++.|+++|++|||+. +|+||||||+||+++.++.+||+|||.+....
T Consensus 109 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~ 185 (317)
T 2buj_A 109 LPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQAC 185 (317)
T ss_dssp EECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEESC
T ss_pred EEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchhcc
Confidence 99999999999997631 123589999999999999999999999 99999999999999999999999999987653
Q ss_pred CCCCCC-------cccccccCCCcccccccCCCC---CCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhc
Q 001226 985 DSHSSS-------TRSAIVGSLGYIAPENAYSTR---LTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQ 1054 (1119)
Q Consensus 985 ~~~~~~-------~~~~~~gt~~y~aPE~~~~~~---~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 1054 (1119)
...... ......||+.|+|||.+.+.. ++.++||||+|+++|||++|+.||...............
T Consensus 186 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~---- 261 (317)
T 2buj_A 186 IHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQ---- 261 (317)
T ss_dssp EEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHH----
T ss_pred cccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhh----
Confidence 211110 112345799999999887554 689999999999999999999998532111111110000
Q ss_pred ccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCCCC
Q 001226 1055 ENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNEGG 1116 (1119)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~~~ 1116 (1119)
..... ......+..+.+++.+||+.||++|||+++++++|+++.+...+.
T Consensus 262 ----------~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~~ 311 (317)
T 2buj_A 262 ----------NQLSI--PQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ 311 (317)
T ss_dssp ----------CC--C--CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC-
T ss_pred ----------ccCCC--CccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCCC
Confidence 00000 001122356889999999999999999999999999998776554
No 218
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=4.2e-37 Score=347.47 Aligned_cols=268 Identities=25% Similarity=0.400 Sum_probs=204.2
Q ss_pred hCCceeeecCCccEEEEEe----CCCceEEEEEeccccc-----ccHHHHHHHHhhcCCCCEEEEeeeeecC--CceEEE
Q 001226 837 TEGRIIGKGKHGTVYRTLS----NNSRKHWAVKKLNRSE-----TNFDVEIRTLSLVRHRNILRIVGSCTKD--EHGFIV 905 (1119)
Q Consensus 837 ~~~~~lG~G~fg~Vy~~~~----~~~~~~vavK~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lV 905 (1119)
+..+.||+|+||.||++.+ ..+++.||||+++... ..+.+|+++++.++||||+++++++.+. ...++|
T Consensus 34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 113 (318)
T 3lxp_A 34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLV 113 (318)
T ss_dssp EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEE
T ss_pred hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEE
Confidence 6779999999999988754 3468899999996542 3478999999999999999999999874 567999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++++|.+++.... +++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 114 ~e~~~~~~L~~~l~~~~----~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 186 (318)
T 3lxp_A 114 MEYVPLGSLRDYLPRHS----IGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE 186 (318)
T ss_dssp ECCCTTCBHHHHGGGSC----CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECCT
T ss_pred EecccCCcHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCccccccccc
Confidence 99999999999997653 89999999999999999999999 999999999999999999999999999987754
Q ss_pred CCCC-CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 986 SHSS-STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 986 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
.... .......+|..|+|||.+.+..++.++||||+|+++|||++|+.||............+..... ........+.
T Consensus 187 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 265 (318)
T 3lxp_A 187 GHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQM-TVLRLTELLE 265 (318)
T ss_dssp TCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHH-HHHHHHHHHH
T ss_pred cccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccch-hHHHHHHHHh
Confidence 3221 2233456788999999998888999999999999999999999998642111000000000000 0000011111
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
..... ..+...+..+.+++.+||+.||++|||++|+++.|+++.++..
T Consensus 266 ~~~~~--~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~ 313 (318)
T 3lxp_A 266 RGERL--PRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQ 313 (318)
T ss_dssp TTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred cccCC--CCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhc
Confidence 11110 1112234578899999999999999999999999999877654
No 219
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=343.24 Aligned_cols=255 Identities=25% Similarity=0.325 Sum_probs=187.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcC-CCCEEEEeeeee--------cCCc
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVR-HRNILRIVGSCT--------KDEH 901 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~-h~niv~l~~~~~--------~~~~ 901 (1119)
+|+..++||+|+||.||+|.+..+++.||||++... ...+.+|+.+++++. ||||+++++++. ....
T Consensus 29 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~ 108 (337)
T 3ll6_A 29 RLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAE 108 (337)
T ss_dssp EEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEE
T ss_pred eEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCce
Confidence 567779999999999999999999999999988432 245778999999996 999999999983 3445
Q ss_pred eEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCCeEeCCCCceEEEeccc
Q 001226 902 GFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQ--IIHRDIKSDNILLDSELEPKIGDFGM 979 (1119)
Q Consensus 902 ~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~Nill~~~~~vkl~DfGl 979 (1119)
.++||||++ |+|.+++........+++..++.++.|++.|++|||+. + |+||||||+||+++.++.+||+|||+
T Consensus 109 ~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 184 (337)
T 3ll6_A 109 FLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCDFGS 184 (337)
T ss_dssp EEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCCCTT
T ss_pred EEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEecCcc
Confidence 799999995 79999987644344699999999999999999999998 8 99999999999999999999999999
Q ss_pred cccccCCCCCC----------cccccccCCCccccccc---CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCcee
Q 001226 980 SKLISDSHSSS----------TRSAIVGSLGYIAPENA---YSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIV 1046 (1119)
Q Consensus 980 a~~~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 1046 (1119)
++......... ......+|+.|+|||.+ .+..++.++||||+||++|||++|+.||...... ...
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--~~~ 262 (337)
T 3ll6_A 185 ATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL--RIV 262 (337)
T ss_dssp CBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----------
T ss_pred ceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH--Hhh
Confidence 98765432211 11244689999999988 5667889999999999999999999998643111 000
Q ss_pred ehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1047 TWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
.... .... .......+.+++.+||+.||++|||++|++++|+++.....
T Consensus 263 ---~~~~----------~~~~------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~ 311 (337)
T 3ll6_A 263 ---NGKY----------SIPP------HDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN 311 (337)
T ss_dssp ------C----------CCCT------TCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred ---cCcc----------cCCc------ccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence 0000 0000 00011246789999999999999999999999999876544
No 220
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=2.7e-36 Score=343.01 Aligned_cols=271 Identities=22% Similarity=0.318 Sum_probs=201.9
Q ss_pred CCCCHHHHHHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------ccHHHHHHHHhhcCCCCEEEEeeeeecC
Q 001226 826 RDLRYEDVIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------TNFDVEIRTLSLVRHRNILRIVGSCTKD 899 (1119)
Q Consensus 826 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------~~~~~E~~~l~~l~h~niv~l~~~~~~~ 899 (1119)
..+.+..+.+|+..+.||+|+||.||+|.+..+++.||||++.... ..+.+|+.+++.++||||+++++++.++
T Consensus 17 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 96 (331)
T 4aaa_A 17 ENLYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKK 96 (331)
T ss_dssp --CCCBCGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred chhhhhhhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecC
Confidence 3455566778999999999999999999999999999999884322 2366899999999999999999999999
Q ss_pred CceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccc
Q 001226 900 EHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGM 979 (1119)
Q Consensus 900 ~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGl 979 (1119)
+..++||||++++++.++..... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 97 ~~~~lv~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~ 170 (331)
T 4aaa_A 97 KRWYLVFEFVDHTILDDLELFPN---GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGF 170 (331)
T ss_dssp TEEEEEEECCSEEHHHHHHHSTT---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTT
T ss_pred CEEEEEEecCCcchHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCC
Confidence 99999999999999988876544 389999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCCCCCcccccccCCCcccccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhh-------
Q 001226 980 SKLISDSHSSSTRSAIVGSLGYIAPENAYST-RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRW------- 1051 (1119)
Q Consensus 980 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~------- 1051 (1119)
++...... .......+|+.|+|||.+.+. .++.++||||+||++|||++|+.||......+. .......
T Consensus 171 ~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~ 247 (331)
T 4aaa_A 171 ARTLAAPG--EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQ-LYHIMMCLGNLIPR 247 (331)
T ss_dssp C--------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCSCCHH
T ss_pred ceeecCCc--cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHH-HHHHHHHhCCCChh
Confidence 98664322 223345789999999988765 789999999999999999999999965321110 0000000
Q ss_pred ---hhcccccccccccccccCCCchH---HHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1052 ---KLQENHECICFLDREISFWDSDD---QLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1052 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.............+......... ...+..+.+++.+||+.||++|||++|++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 307 (331)
T 4aaa_A 248 HQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH 307 (331)
T ss_dssp HHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred hhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 00000000000001111000000 1234578999999999999999999999875
No 221
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.9e-36 Score=343.70 Aligned_cols=265 Identities=23% Similarity=0.263 Sum_probs=197.7
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceE
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGF 903 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 903 (1119)
..+|+..+.||+|+||.||+|.+..+++.||||+++.. ...+.+|+.+++.++||||+++++++.+.+..+
T Consensus 9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 88 (346)
T 1ua2_A 9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS 88 (346)
T ss_dssp ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence 35788889999999999999999999999999998532 235778999999999999999999999999999
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+||||+++ +|.+++..... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 89 lv~e~~~~-~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~ 162 (346)
T 1ua2_A 89 LVFDFMET-DLEVIIKDNSL--VLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSF 162 (346)
T ss_dssp EEEECCSE-EHHHHHTTCCS--SCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred EEEEcCCC-CHHHHHHhcCc--CCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccceec
Confidence 99999975 89888876542 478889999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCCCcccccccCCCcccccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccc-----
Q 001226 984 SDSHSSSTRSAIVGSLGYIAPENAYST-RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENH----- 1057 (1119)
Q Consensus 984 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~----- 1057 (1119)
.... .......+|+.|+|||.+.+. .++.++||||+||++|||++|..||......+.....+.........
T Consensus 163 ~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 240 (346)
T 1ua2_A 163 GSPN--RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDM 240 (346)
T ss_dssp TSCC--CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSST
T ss_pred cCCc--ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhh
Confidence 4322 223345789999999988654 58899999999999999999999986432110000000000000000
Q ss_pred -ccccccc-ccccCCC--chHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1058 -ECICFLD-REISFWD--SDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1058 -~~~~~~~-~~~~~~~--~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
....... ....... ......+.++.+++.+||+.||++|||++|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 241 CSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp TSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred ccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 0000000 0000000 0001224578999999999999999999999986
No 222
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=2.8e-36 Score=348.42 Aligned_cols=249 Identities=10% Similarity=0.032 Sum_probs=178.1
Q ss_pred hhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-------ccHHHHHHHHhhc--CCCCEEEEee-------eeecC
Q 001226 836 ATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-------TNFDVEIRTLSLV--RHRNILRIVG-------SCTKD 899 (1119)
Q Consensus 836 ~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-------~~~~~E~~~l~~l--~h~niv~l~~-------~~~~~ 899 (1119)
|+..+.||+|+||.||+|.+..+++.||||+++... ..+.+|+.+++.+ +||||++++. ++..+
T Consensus 64 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~ 143 (371)
T 3q60_A 64 LKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQ 143 (371)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEET
T ss_pred eeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecC
Confidence 566789999999999999999999999999986532 3456775545444 6999888653 33322
Q ss_pred -----------------CceEEEEeccCCCCHHHhhccCCCCCCCCHHHH------HHHHHHHHHHHHHHHhCCCCCeEe
Q 001226 900 -----------------EHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTR------YHIALGIAQGLSYLHYDCVPQIIH 956 (1119)
Q Consensus 900 -----------------~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~------~~i~~~i~~~l~~LH~~~~~~ivH 956 (1119)
...|+||||++ |+|.+++...+. .+++..+ ..++.||++|++|||+. +|+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~--~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~ivH 217 (371)
T 3q60_A 144 SQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF--VYVFRGDEGILALHILTAQLIRLAANLQSK---GLVH 217 (371)
T ss_dssp TSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TEEE
T ss_pred CCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc--ccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CCcc
Confidence 23799999998 899999987532 2344455 67789999999999999 9999
Q ss_pred cCCCCCCeEeCCCCceEEEeccccccccCCCCCCcccccccCCCcccccccCC--CCCCCcchHHHHHHHHHHHHhCCCC
Q 001226 957 RDIKSDNILLDSELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYS--TRLTEKSDVYSYGVILFELLFRKMP 1034 (1119)
Q Consensus 957 ~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwslG~vl~elltg~~p 1034 (1119)
|||||+||+++.++.+||+|||+++.... ......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.|
T Consensus 218 rDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~P 292 (371)
T 3q60_A 218 GHFTPDNLFIMPDGRLMLGDVSALWKVGT-----RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLP 292 (371)
T ss_dssp TTCSGGGEEECTTSCEEECCGGGEEETTC-----EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CcCCHHHEEECCCCCEEEEecceeeecCC-----CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999986643 1114457799999999987 6799999999999999999999999
Q ss_pred CCCCCCCCCceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1035 VDPSFGEDTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
|............ .... .......... ......+..+.+++.+||+.||++|||++|++++
T Consensus 293 f~~~~~~~~~~~~--~~~~------~~~~~~~~~~--~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 353 (371)
T 3q60_A 293 FGLVTPGIKGSWK--RPSL------RVPGTDSLAF--GSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMET 353 (371)
T ss_dssp TTBCCTTCTTCCC--BCCT------TSCCCCSCCC--TTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTS
T ss_pred CCCcCcccccchh--hhhh------hhccccccch--hhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 9765332221111 0000 0000001000 0011224577899999999999999999999863
No 223
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=8.8e-36 Score=338.80 Aligned_cols=262 Identities=20% Similarity=0.259 Sum_probs=201.6
Q ss_pred HHHHhhCCceeeecCCccEEEEEeCCCceEEEEEeccc-ccccHHHHHHHHhhcC-CCCEEEEeeeeec--CCceEEEEe
Q 001226 832 DVIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR-SETNFDVEIRTLSLVR-HRNILRIVGSCTK--DEHGFIVTE 907 (1119)
Q Consensus 832 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~-~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~lV~e 907 (1119)
...+|+..+.||+|+||.||+|.+..+++.||||+++. ....+.+|+.+++.++ ||||+++++++.+ ....++|||
T Consensus 34 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e 113 (330)
T 3nsz_A 34 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFE 113 (330)
T ss_dssp EGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEE
T ss_pred CCCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEe
Confidence 33577888999999999999999999999999999864 3466889999999997 9999999999987 567899999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC-ceEEEeccccccccCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL-EPKIGDFGMSKLISDS 986 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~-~vkl~DfGla~~~~~~ 986 (1119)
|+++++|.+++.. +++..+..++.|++.|++|||+. +|+||||||+||+++.++ .+||+|||+++.....
T Consensus 114 ~~~~~~l~~~~~~------~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~ 184 (330)
T 3nsz_A 114 HVNNTDFKQLYQT------LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG 184 (330)
T ss_dssp CCCCCCHHHHGGG------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred ccCchhHHHHHHh------CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC
Confidence 9999999998853 78889999999999999999999 999999999999999777 8999999999876543
Q ss_pred CCCCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhh------------
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKL------------ 1053 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~------------ 1053 (1119)
. ......+|..|+|||.+.+ ..++.++||||+||++|||++|+.||..................
T Consensus 185 ~---~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 261 (330)
T 3nsz_A 185 Q---EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYN 261 (330)
T ss_dssp C---CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred C---ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhc
Confidence 2 2334578999999998877 67899999999999999999999999643222111111000000
Q ss_pred -cccccccccccc----ccc--CCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1054 -QENHECICFLDR----EIS--FWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1054 -~~~~~~~~~~~~----~~~--~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
............ ... .........+.++.+++.+||+.||++|||++|+++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h 320 (330)
T 3nsz_A 262 IELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH 320 (330)
T ss_dssp CCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred cccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 000000000000 000 0000111235678999999999999999999999985
No 224
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=4.8e-36 Score=331.69 Aligned_cols=243 Identities=26% Similarity=0.393 Sum_probs=192.6
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
+|+..+.||+|+||.||+|.+..+++.||||++... ...+.+|+..++.++||||+++++++.+++..++|||
T Consensus 12 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 91 (276)
T 2h6d_A 12 HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVME 91 (276)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred cEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEe
Confidence 567779999999999999999988999999998532 2357889999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|+++++|.+++.... .+++..+..++.|+++|+.|||+. +++||||||+||+++.++.+|++|||.+.......
T Consensus 92 ~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~ 165 (276)
T 2h6d_A 92 YVSGGELFDYICKHG---RVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165 (276)
T ss_dssp CCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred ccCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence 999999999998764 389999999999999999999999 99999999999999999999999999998764422
Q ss_pred CCCcccccccCCCcccccccCCCCC-CCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAYSTRL-TEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDRE 1066 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1119)
......+++.|+|||.+.+..+ +.++||||+|+++|||++|+.||..... .......... .
T Consensus 166 ---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~~~~~~~----------~ 227 (276)
T 2h6d_A 166 ---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV-----PTLFKKIRGG----------V 227 (276)
T ss_dssp --------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHHHHHC----------C
T ss_pred ---ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH-----HHHHHHhhcC----------c
Confidence 2234568999999999887765 6899999999999999999999864211 0000000000 0
Q ss_pred ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1067 ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1067 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.. .+...+..+.+++.+|++.||++|||++|++++
T Consensus 228 ~~----~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 228 FY----IPEYLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp CC----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred cc----CchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 00 001123467899999999999999999999986
No 225
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=2.3e-36 Score=334.51 Aligned_cols=252 Identities=24% Similarity=0.392 Sum_probs=197.7
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc--cccHHHHHHHHhhcCCCCEEEEeeeeecC-CceEEEEecc
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS--ETNFDVEIRTLSLVRHRNILRIVGSCTKD-EHGFIVTEYM 909 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~lV~e~~ 909 (1119)
..+|+..+.||+|+||.||+|.+. ++.||||+++.. ...+.+|+.+++.++||||+++++++.+. +..++||||+
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~ 97 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 97 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred hhhceEEeEEecCCCceEEEEEEc--CCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecC
Confidence 356788899999999999999875 789999999653 35678999999999999999999987554 5789999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCC
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSS 989 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~ 989 (1119)
++++|.+++..... ..+++..+..++.|+++|++|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 98 ~~~~L~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~--- 170 (278)
T 1byg_A 98 AKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST--- 170 (278)
T ss_dssp TTEEHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred CCCCHHHHHHhccc-ccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccccc---
Confidence 99999999976532 2378899999999999999999999 9999999999999999999999999998765432
Q ss_pred CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhccccccccccccccc
Q 001226 990 STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREIS 1068 (1119)
Q Consensus 990 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1119)
.....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||...... +. .... ... .....
T Consensus 171 --~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~---~~~~-~~~------~~~~~- 235 (278)
T 1byg_A 171 --QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DV---VPRV-EKG------YKMDA- 235 (278)
T ss_dssp -------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GH---HHHH-TTT------CCCCC-
T ss_pred --ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HH---HHHH-hcC------CCCCC-
Confidence 223357889999999988889999999999999999998 99998643211 10 0000 000 00000
Q ss_pred CCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1069 FWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1069 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
+...+..+.+++.+||+.||++|||++|+++.|+++++..
T Consensus 236 -----~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 236 -----PDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp -----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred -----cccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 1122456889999999999999999999999999987654
No 226
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=5.9e-36 Score=343.23 Aligned_cols=266 Identities=20% Similarity=0.282 Sum_probs=199.1
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeec--------
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTK-------- 898 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~-------- 898 (1119)
+.+|+..+.||+|+||.||+|++..+++.||||++... ...+.+|+.+++.++||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 45788889999999999999999999999999988432 2356789999999999999999999876
Q ss_pred CCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecc
Q 001226 899 DEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFG 978 (1119)
Q Consensus 899 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfG 978 (1119)
.+..++||||+++ ++.+.+..... .+++..++.++.|++.|++|||+. +|+||||||+||+++.++.+||+|||
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg 169 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVLV--KFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG 169 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTTS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CceEEEEEeccCC-CHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccch
Confidence 3467999999975 77777765543 489999999999999999999999 99999999999999999999999999
Q ss_pred ccccccCCCC--CCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhh-----
Q 001226 979 MSKLISDSHS--SSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTR----- 1050 (1119)
Q Consensus 979 la~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~----- 1050 (1119)
+++....... ........||+.|+|||.+.+ ..++.++||||+||++|||++|+.||........ ......
T Consensus 170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~i~~~~~~~ 248 (351)
T 3mi9_A 170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQ-LALISQLCGSI 248 (351)
T ss_dssp TCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCC
T ss_pred hcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHhCCC
Confidence 9987653221 223345678999999998876 5589999999999999999999999975321100 000000
Q ss_pred ----hhhcccccccccccccccCCCchHH-----HHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1051 ----WKLQENHECICFLDREISFWDSDDQ-----LKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1051 ----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
+...........+............ .....+.+++.+||+.||++|||++|++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 312 (351)
T 3mi9_A 249 TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 312 (351)
T ss_dssp CTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred ChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence 0000000000000000000000010 113458899999999999999999999986
No 227
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.8e-35 Score=338.99 Aligned_cols=319 Identities=18% Similarity=0.135 Sum_probs=253.5
Q ss_pred cCCcccEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCccccccccccee
Q 001226 94 KNQHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESI 173 (1119)
Q Consensus 94 ~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 173 (1119)
.++++++|++++|.++...+..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+++..|..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 56899999999999985444457999999999999999998878899999999999999999998888889999999999
Q ss_pred eecccccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCC
Q 001226 174 GFHNNFLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGG 253 (1119)
Q Consensus 174 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~ 253 (1119)
++++|.++...+..|+.+++|++|++++|++++.. |..+.++++|++|++++|++++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-----------------------DDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-----------------------TTTTSSCTTCCEEECCSSCCSB
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-----------------------hhhccCCCCCCEEECCCCcCCc
Confidence 99999999766666789999999999999887543 3457788889999999998874
Q ss_pred ccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccC
Q 001226 254 AISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVG 333 (1119)
Q Consensus 254 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 333 (1119)
. .+..+++|++|++++|.+++. ...++|++|++++|.++..... ..++|++|++++|.+++. ..+.
T Consensus 180 ~----~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 180 V----DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp C----CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGG
T ss_pred c----ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHc
Confidence 3 256678888888888887742 3446788888888888765332 246788888888888753 4677
Q ss_pred CCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEE
Q 001226 334 NLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVEL 413 (1119)
Q Consensus 334 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 413 (1119)
.+++|++|++++|.+++..|..|..+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 88888888888888887777788888888888888888874 4556667788888888888887 455567778888888
Q ss_pred EeecccccccCCccccCCCCcCEEEccCccCcccchhhhhc
Q 001226 414 ALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGK 454 (1119)
Q Consensus 414 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 454 (1119)
++++|+++.. + +..+++|+.|++++|++++.....++.
T Consensus 324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~ 361 (390)
T 3o6n_A 324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFR 361 (390)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred ECCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHHH
Confidence 8888888743 3 667778888888888887654444443
No 228
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=9.5e-36 Score=337.12 Aligned_cols=248 Identities=27% Similarity=0.345 Sum_probs=197.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------------cccHHHHHHHHhhcCCCCEEEEeeeeecCCc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEH 901 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 901 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||++... ...+.+|+.+++.++||||+++++++..+.
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 88 (322)
T 2ycf_A 10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED- 88 (322)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence 4788889999999999999999999999999988532 134789999999999999999999987654
Q ss_pred eEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCc---eEEEecc
Q 001226 902 GFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELE---PKIGDFG 978 (1119)
Q Consensus 902 ~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~---vkl~DfG 978 (1119)
.|+||||+++++|.+++.... .+++..+..++.|++.|+.|||+. +|+||||||+||+++.++. +||+|||
T Consensus 89 ~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg 162 (322)
T 2ycf_A 89 YYIVLELMEGGELFDKVVGNK---RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFG 162 (322)
T ss_dssp EEEEEECCTTEETHHHHSTTC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECCCT
T ss_pred eEEEEecCCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEccCc
Confidence 899999999999999997654 489999999999999999999999 9999999999999987664 9999999
Q ss_pred ccccccCCCCCCcccccccCCCccccccc---CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcc
Q 001226 979 MSKLISDSHSSSTRSAIVGSLGYIAPENA---YSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 979 la~~~~~~~~~~~~~~~~gt~~y~aPE~~---~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
+++..... .......||+.|+|||.+ ....++.++||||+||++|||++|+.||........ .. ......
T Consensus 163 ~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~---~~~~~~ 235 (322)
T 2ycf_A 163 HSKILGET---SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS-LK---DQITSG 235 (322)
T ss_dssp TCEECCCC---HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSC-HH---HHHHHT
T ss_pred cceecccc---cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHH-HH---HHHHhC
Confidence 99876432 122345689999999986 356789999999999999999999999975322111 10 000000
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1056 NHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
............+..+.+++.+||+.||++||+++|++++
T Consensus 236 ----------~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h 275 (322)
T 2ycf_A 236 ----------KYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH 275 (322)
T ss_dssp ----------CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred ----------ccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence 0000000011234578899999999999999999999864
No 229
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=2e-36 Score=348.38 Aligned_cols=262 Identities=23% Similarity=0.340 Sum_probs=200.8
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEecc
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
+|+..+.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+.+++.++||||+++++++.+++..++||||+
T Consensus 34 ~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 113 (360)
T 3eqc_A 34 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHM 113 (360)
T ss_dssp GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred cceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECC
Confidence 567778999999999999999999999999998643 245788999999999999999999999999999999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCC
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSS 989 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~ 989 (1119)
++++|.+++...+ .+++..+..++.|++.|++|||+.+ +|+||||||+||+++.++.+||+|||++......
T Consensus 114 ~~~~L~~~l~~~~---~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--- 185 (360)
T 3eqc_A 114 DGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--- 185 (360)
T ss_dssp TTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH---
T ss_pred CCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCcccccc---
Confidence 9999999998764 3889999999999999999999842 8999999999999999999999999999765432
Q ss_pred CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCcee------------ehhhhh-----
Q 001226 990 STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIV------------TWTRWK----- 1052 (1119)
Q Consensus 990 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~------------~~~~~~----- 1052 (1119)
......||+.|+|||.+.+..++.++||||+||++|||++|+.||........... .+....
T Consensus 186 -~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (360)
T 3eqc_A 186 -MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPL 264 (360)
T ss_dssp -C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC---------------------
T ss_pred -cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcc
Confidence 12345789999999999999999999999999999999999999975321110000 000000
Q ss_pred ------hcccccccccccccccC--CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1053 ------LQENHECICFLDREISF--WDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1053 ------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...........+..... ........+..+.+++.+||+.||++|||++|+++|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 325 (360)
T 3eqc_A 265 NKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH 325 (360)
T ss_dssp ---------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred cccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence 00000000000000000 000011124468899999999999999999999975
No 230
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=8.6e-36 Score=334.82 Aligned_cols=248 Identities=24% Similarity=0.298 Sum_probs=196.9
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc--------cccHHHHHHHHhhcCCCCEEEEeeee--ecCCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS--------ETNFDVEIRTLSLVRHRNILRIVGSC--TKDEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--------~~~~~~E~~~l~~l~h~niv~l~~~~--~~~~~~~ 903 (1119)
.+|...+.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+.+++.++||||+++++++ .+....+
T Consensus 5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 84 (305)
T 2wtk_C 5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMY 84 (305)
T ss_dssp CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEE
T ss_pred cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEE
Confidence 3677889999999999999999999999999998532 24578999999999999999999998 4456789
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+||||++++ +.+++..... ..+++..+..++.|+++|+.|||+. +|+||||||+||+++.++.+|++|||.+...
T Consensus 85 lv~e~~~~~-l~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~ 159 (305)
T 2wtk_C 85 MVMEYCVCG-MQEMLDSVPE-KRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEAL 159 (305)
T ss_dssp EEEECCSEE-HHHHHHHSTT-CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEehhccCC-HHHHHHhCcc-cccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeecccccccc
Confidence 999999876 7777766542 3589999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCCCcccccccCCCcccccccCCCC--CCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccc
Q 001226 984 SDSHSSSTRSAIVGSLGYIAPENAYSTR--LTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECIC 1061 (1119)
Q Consensus 984 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1119)
.............||+.|+|||...+.. ++.++||||+|+++|||++|+.||.... ..........
T Consensus 160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~i~~------- 227 (305)
T 2wtk_C 160 HPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN-----IYKLFENIGK------- 227 (305)
T ss_dssp CTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHHHHHHHH-------
T ss_pred CccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHhc-------
Confidence 5433333344567899999999887644 3779999999999999999999986421 1000000000
Q ss_pred cccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1062 FLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..... +...+..+.+++.+||+.||++|||++|++++
T Consensus 228 ---~~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 228 ---GSYAI----PGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp ---CCCCC----CSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred ---CCCCC----CCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 00000 01123467899999999999999999999986
No 231
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2e-36 Score=351.08 Aligned_cols=263 Identities=23% Similarity=0.269 Sum_probs=196.2
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccccccHHHHHHHHhhcCCCCEEEEeeeeecC---------------
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTLSLVRHRNILRIVGSCTKD--------------- 899 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--------------- 899 (1119)
+|+..+.||+|+||+||+|.+..+++.||||++..+.....+|+.+++.++||||+++++++...
T Consensus 8 ~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~ 87 (383)
T 3eb0_A 8 KYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHN 87 (383)
T ss_dssp TEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHTTCCCTTBCCEEEEEEEC---------------
T ss_pred eEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHHcCCCCccchhheeeecCcccccccccccccc
Confidence 57778999999999999999999999999999987777777899999999999999999998432
Q ss_pred -----------------------CceEEEEeccCCCCHHHhhccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 001226 900 -----------------------EHGFIVTEYMPGGTLFNVLHQN-EPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQII 955 (1119)
Q Consensus 900 -----------------------~~~~lV~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~iv 955 (1119)
...++||||++ |+|.+.+... .....+++..+..++.|+++|++|||+. +|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---gi~ 163 (383)
T 3eb0_A 88 KLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL---GIC 163 (383)
T ss_dssp ----------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEE
T ss_pred cccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---cCc
Confidence 34789999997 5877777642 1123589999999999999999999999 999
Q ss_pred ecCCCCCCeEeC-CCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCC-CCCCcchHHHHHHHHHHHHhCCC
Q 001226 956 HRDIKSDNILLD-SELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYST-RLTEKSDVYSYGVILFELLFRKM 1033 (1119)
Q Consensus 956 H~Dlkp~Nill~-~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~ 1033 (1119)
||||||+||+++ .++.+||+|||+++...... ......+|+.|+|||.+.+. .++.++||||+||++|||++|+.
T Consensus 164 H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~ 240 (383)
T 3eb0_A 164 HRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE---PSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKP 240 (383)
T ss_dssp CSCCCGGGEEEETTTTEEEECCCTTCEECCTTS---CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred cCccCHHHEEEcCCCCcEEEEECCCCcccCCCC---CCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCC
Confidence 999999999997 68899999999998764432 23345789999999988764 58999999999999999999999
Q ss_pred CCCCCCCCCCceeehhhhhhc--------ccccccccccccccCCC---chHHHHHHHHHHHHHHccccCCCCCCCHHHH
Q 001226 1034 PVDPSFGEDTDIVTWTRWKLQ--------ENHECICFLDREISFWD---SDDQLKALRLLELALECTRQVADMRPSMREV 1102 (1119)
Q Consensus 1034 p~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~cl~~dP~~RPs~~el 1102 (1119)
||......+. .......... .........-+...... ..+...+..+.+++.+||+.||++|||++|+
T Consensus 241 pf~~~~~~~~-~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~ 319 (383)
T 3eb0_A 241 LFSGETSIDQ-LVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEA 319 (383)
T ss_dssp SSCCSSHHHH-HHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred CCCCCChHHH-HHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 9975321110 0000000000 00000000000000000 0011134568899999999999999999999
Q ss_pred HHH
Q 001226 1103 VGF 1105 (1119)
Q Consensus 1103 l~~ 1105 (1119)
++|
T Consensus 320 l~h 322 (383)
T 3eb0_A 320 MAH 322 (383)
T ss_dssp HTS
T ss_pred hcC
Confidence 864
No 232
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=8.2e-36 Score=334.60 Aligned_cols=246 Identities=28% Similarity=0.403 Sum_probs=202.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||+++.. ...+.+|+.+++.++||||+++++++.+++..++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 101 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY 101 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence 3467779999999999999999999999999998532 25678999999999999999999999999999999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHS 988 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~ 988 (1119)
+++++|.+++... .+++..+..++.|++.|+.|||+. +|+||||||+||+++.++.+||+|||.+.......
T Consensus 102 ~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~- 173 (303)
T 3a7i_A 102 LGGGSALDLLEPG----PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ- 173 (303)
T ss_dssp CTTEEHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB-
T ss_pred CCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCccc-
Confidence 9999999998753 489999999999999999999999 99999999999999999999999999998765422
Q ss_pred CCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccccccc
Q 001226 989 SSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREIS 1068 (1119)
Q Consensus 989 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1119)
.......||+.|+|||.+.+..++.++||||+|+++|||++|+.||...... . ........ ..+.+.
T Consensus 174 -~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~---~~~~~~~~-------~~~~~~ 240 (303)
T 3a7i_A 174 -IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM--K---VLFLIPKN-------NPPTLE 240 (303)
T ss_dssp -CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--H---HHHHHHHS-------CCCCCC
T ss_pred -cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--H---HHHHhhcC-------CCCCCc
Confidence 2233457899999999999999999999999999999999999998643110 0 00000000 000111
Q ss_pred CCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 001226 1069 FWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFL 1106 (1119)
Q Consensus 1069 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L 1106 (1119)
...+..+.+++.+||+.||++|||++|++++.
T Consensus 241 ------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~ 272 (303)
T 3a7i_A 241 ------GNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 272 (303)
T ss_dssp ------SSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred ------cccCHHHHHHHHHHcCCChhhCcCHHHHhhCh
Confidence 11234678999999999999999999999864
No 233
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=1.4e-36 Score=353.26 Aligned_cols=269 Identities=21% Similarity=0.271 Sum_probs=196.3
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccccccHHHHHHHHhhcCCCCEEEEeeeeecCC------ceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTLSLVRHRNILRIVGSCTKDE------HGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~~~lV~e~ 908 (1119)
+|+..++||+|+||+||+|++..+++ ||+|++........+|+.+++.++||||+++++++...+ ..++||||
T Consensus 41 ~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~ 119 (394)
T 4e7w_A 41 AYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEY 119 (394)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEEC
T ss_pred eEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeec
Confidence 57778999999999999999988655 899988666666678999999999999999999985543 27899999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC-CCCceEEEeccccccccCCC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD-SELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~-~~~~vkl~DfGla~~~~~~~ 987 (1119)
++++.+............+++..++.++.|+++|++|||+. +|+||||||+||+++ .++.+||+|||+++......
T Consensus 120 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~ 196 (394)
T 4e7w_A 120 VPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGE 196 (394)
T ss_dssp CSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTC
T ss_pred cCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCC
Confidence 98754443333222233589999999999999999999999 999999999999998 78999999999998764422
Q ss_pred CCCcccccccCCCcccccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccc-----ccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAYST-RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHE-----CIC 1061 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 1061 (1119)
......+|+.|+|||.+.+. .++.++||||+||++|||++|+.||......+. .....+........ ...
T Consensus 197 ---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~-l~~i~~~~g~p~~~~~~~~~~~ 272 (394)
T 4e7w_A 197 ---PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQ-LVEIIKVLGTPSREQIKTMNPN 272 (394)
T ss_dssp ---CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHHHCCCCHHHHHHHCGG
T ss_pred ---CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHhCCCCHHHHHhhChh
Confidence 22345789999999988764 589999999999999999999999975321110 00000000000000 000
Q ss_pred cccccccCCCch------HHHHHHHHHHHHHHccccCCCCCCCHHHHHHH--HHcccc
Q 001226 1062 FLDREISFWDSD------DQLKALRLLELALECTRQVADMRPSMREVVGF--LIKLND 1111 (1119)
Q Consensus 1062 ~~~~~~~~~~~~------~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~--L~~~~~ 1111 (1119)
+....+...... ....+.++.+++.+||+.||++|||++|+++| ++.++.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~ 330 (394)
T 4e7w_A 273 YMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELRT 330 (394)
T ss_dssp GSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTTS
T ss_pred hhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhcc
Confidence 011111000000 01134578999999999999999999999987 554433
No 234
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.7e-36 Score=336.29 Aligned_cols=249 Identities=22% Similarity=0.353 Sum_probs=199.3
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc--cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS--ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~ 911 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++.+++..++||||+++
T Consensus 29 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 108 (314)
T 3com_A 29 EVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGA 108 (314)
T ss_dssp -CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred hhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCC
Confidence 4577779999999999999999999999999998543 45688999999999999999999999999999999999999
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCCc
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSST 991 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~ 991 (1119)
++|.+++..... .+++..+..++.|++.|+.|||+. +++||||||+||+++.++.+||+|||.+....... ..
T Consensus 109 ~~L~~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~--~~ 181 (314)
T 3com_A 109 GSVSDIIRLRNK--TLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM--AK 181 (314)
T ss_dssp EEHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTB--SC
T ss_pred CCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhc--cc
Confidence 999999974432 489999999999999999999999 99999999999999999999999999998765422 22
Q ss_pred ccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCCC
Q 001226 992 RSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFWD 1071 (1119)
Q Consensus 992 ~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1119)
.....+|+.|+|||.+.+..++.++||||+|+++|||++|+.||...... ..... .... .....
T Consensus 182 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~~~~--~~~~------~~~~~---- 245 (314)
T 3com_A 182 RNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM----RAIFM--IPTN------PPPTF---- 245 (314)
T ss_dssp BCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHHH--HHHS------CCCCC----
T ss_pred cCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH----HHHHH--HhcC------CCccc----
Confidence 33457899999999999889999999999999999999999998643110 00000 0000 00000
Q ss_pred chHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1072 SDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1072 ~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..+...+..+.+++.+||+.||++|||+++++++
T Consensus 246 ~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~ 279 (314)
T 3com_A 246 RKPELWSDNFTDFVKQCLVKSPEQRATATQLLQH 279 (314)
T ss_dssp SSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred CCcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 0111224567899999999999999999999874
No 235
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=9e-36 Score=333.46 Aligned_cols=248 Identities=24% Similarity=0.326 Sum_probs=200.8
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------------cccHHHHHHHHhhcC-CCCEEEEeeeeecC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------------ETNFDVEIRTLSLVR-HRNILRIVGSCTKD 899 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------------~~~~~~E~~~l~~l~-h~niv~l~~~~~~~ 899 (1119)
.+|+..+.||+|+||.||+|.++.+++.||||+++.. ...+.+|+.++++++ ||||+++++++.++
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~ 96 (298)
T 1phk_A 17 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN 96 (298)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred hccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccC
Confidence 4677789999999999999999999999999998532 234678999999996 99999999999999
Q ss_pred CceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccc
Q 001226 900 EHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGM 979 (1119)
Q Consensus 900 ~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGl 979 (1119)
+..++||||+++++|.+++.... .+++..+..++.|++.|+.|||+. +++||||||+||+++.++.+||+|||.
T Consensus 97 ~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~ 170 (298)
T 1phk_A 97 TFFFLVFDLMKKGELFDYLTEKV---TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGF 170 (298)
T ss_dssp SEEEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred CeEEEEEeccCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEecccc
Confidence 99999999999999999998754 489999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCCCCCcccccccCCCcccccccC------CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhh
Q 001226 980 SKLISDSHSSSTRSAIVGSLGYIAPENAY------STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKL 1053 (1119)
Q Consensus 980 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 1053 (1119)
+....... ......+++.|+|||.+. ...++.++||||+|+++|||++|+.||..... .. ......
T Consensus 171 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~---~~~~~~ 242 (298)
T 1phk_A 171 SCQLDPGE---KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ--ML---MLRMIM 242 (298)
T ss_dssp CEECCTTC---CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HH---HHHHHH
T ss_pred hhhcCCCc---ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccH--HH---HHHHHh
Confidence 98765422 233456899999999764 45688999999999999999999999864311 00 000000
Q ss_pred cccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1054 QENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
..............+..+.+++.+||+.||++|||++|++++
T Consensus 243 ----------~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (298)
T 1phk_A 243 ----------SGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH 284 (298)
T ss_dssp ----------HTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred ----------cCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHhC
Confidence 000000001112234578899999999999999999999874
No 236
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=4.3e-36 Score=335.51 Aligned_cols=247 Identities=26% Similarity=0.381 Sum_probs=196.7
Q ss_pred CCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCCCC
Q 001226 838 EGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPGGT 913 (1119)
Q Consensus 838 ~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~gs 913 (1119)
...+||+|+||.||+|.+..+++.||||+++.. ...+.+|+.+++.++||||+++++++.+.+..++||||+++++
T Consensus 26 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~ 105 (295)
T 2clq_A 26 DRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGS 105 (295)
T ss_dssp SBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEE
T ss_pred CcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCC
Confidence 346899999999999999999999999988543 3457889999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC-CCceEEEeccccccccCCCCCCcc
Q 001226 914 LFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS-ELEPKIGDFGMSKLISDSHSSSTR 992 (1119)
Q Consensus 914 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~-~~~vkl~DfGla~~~~~~~~~~~~ 992 (1119)
|.+++.........++..+..++.|++.|++|||+. +|+||||||+||+++. ++.+||+|||.+....... ...
T Consensus 106 L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~--~~~ 180 (295)
T 2clq_A 106 LSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN--PCT 180 (295)
T ss_dssp HHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-------
T ss_pred HHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCCC--Ccc
Confidence 999998765444578899999999999999999999 9999999999999987 8999999999998664322 122
Q ss_pred cccccCCCcccccccCCC--CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCC
Q 001226 993 SAIVGSLGYIAPENAYST--RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFW 1070 (1119)
Q Consensus 993 ~~~~gt~~y~aPE~~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1119)
....||+.|+|||.+.+. .++.++||||+|+++|||++|+.||........ ..+...... ..+.+
T Consensus 181 ~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~--------~~~~~--- 247 (295)
T 2clq_A 181 ETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQA--AMFKVGMFK--------VHPEI--- 247 (295)
T ss_dssp CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHH--HHHHHHHHC--------CCCCC---
T ss_pred cccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhH--HHHhhcccc--------ccccc---
Confidence 345689999999988654 378999999999999999999999863211100 000000000 00111
Q ss_pred CchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1071 DSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1071 ~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
+...+..+.+++.+||+.||++||+++|++++
T Consensus 248 ---~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~ 279 (295)
T 2clq_A 248 ---PESMSAEAKAFILKCFEPDPDKRACANDLLVD 279 (295)
T ss_dssp ---CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred ---cccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 11223467899999999999999999999875
No 237
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9e-36 Score=342.84 Aligned_cols=254 Identities=24% Similarity=0.309 Sum_probs=190.9
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCC------ce
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDE------HG 902 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~~ 902 (1119)
+|+..+.||+|+||.||+|.+..+++.||||++... ...+.+|+++++.++||||+++++++..++ ..
T Consensus 26 ~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~ 105 (367)
T 1cm8_A 26 VYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDF 105 (367)
T ss_dssp SEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCC
T ss_pred eEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceE
Confidence 566778999999999999999999999999998532 234678999999999999999999987653 45
Q ss_pred EEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccc
Q 001226 903 FIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKL 982 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~ 982 (1119)
|+||||+ +++|.+++... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 106 ~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 177 (367)
T 1cm8_A 106 YLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQ 177 (367)
T ss_dssp EEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence 9999999 88999999763 388999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCCCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccc---
Q 001226 983 ISDSHSSSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHE--- 1058 (1119)
Q Consensus 983 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~--- 1058 (1119)
... ......+|++|+|||.+.+ ..++.++||||+||++|||++|+.||......+. ..............
T Consensus 178 ~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-l~~i~~~~g~~~~~~~~ 251 (367)
T 1cm8_A 178 ADS-----EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQ-LKEIMKVTGTPPAEFVQ 251 (367)
T ss_dssp CCS-----SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHHHCCCCHHHHH
T ss_pred ccc-----ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHhcCCCCHHHHH
Confidence 543 2234578999999998876 6799999999999999999999999975321100 00000000000000
Q ss_pred -------------ccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1059 -------------CICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1059 -------------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
........+. ......+..+.+++.+|++.||++|||++|+++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h 308 (367)
T 1cm8_A 252 RLQSDEAKNYMKGLPELEKKDFA---SILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH 308 (367)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCGG---GTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HhhhHHHHHHHHhCCCCCCCCHH---HHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence 0000000000 0011224567899999999999999999999986
No 238
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=2.2e-35 Score=340.71 Aligned_cols=256 Identities=25% Similarity=0.290 Sum_probs=190.6
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCC------c
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDE------H 901 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~ 901 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||++... ...+.+|+.+++.++||||+++++++...+ .
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 104 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD 104 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCE
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccc
Confidence 4677789999999999999999999999999998542 234678999999999999999999987654 6
Q ss_pred eEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 902 GFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 902 ~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
.|+||||++ ++|.+++.. .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 105 ~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 175 (371)
T 2xrw_A 105 VYIVMELMD-ANLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLAR 175 (371)
T ss_dssp EEEEEECCS-EEHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC--
T ss_pred eEEEEEcCC-CCHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeeccc
Confidence 799999996 578888752 388999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccc----
Q 001226 982 LISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENH---- 1057 (1119)
Q Consensus 982 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~---- 1057 (1119)
..... .......||+.|+|||.+.+..++.++||||+||++|||++|+.||...... ..+.........
T Consensus 176 ~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~----~~~~~i~~~~~~~~~~ 248 (371)
T 2xrw_A 176 TAGTS---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHI----DQWNKVIEQLGTPCPE 248 (371)
T ss_dssp -----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH----HHHHHHHC-CCCCCHH
T ss_pred ccccc---cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHH----HHHHHHHHHhCCCCHH
Confidence 66432 1233457899999999999999999999999999999999999999753211 000000000000
Q ss_pred ----------------------ccccccccc-ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1058 ----------------------ECICFLDRE-ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1058 ----------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.....+... ...........+..+.+++.+||+.||++|||++|+++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h 319 (371)
T 2xrw_A 249 FMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH 319 (371)
T ss_dssp HHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred HHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence 000000000 011111223346688999999999999999999999986
No 239
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=4.8e-36 Score=352.34 Aligned_cols=194 Identities=28% Similarity=0.340 Sum_probs=171.2
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc---ccHHHHHHHHhhc------CCCCEEEEeeeeecCCceEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE---TNFDVEIRTLSLV------RHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---~~~~~E~~~l~~l------~h~niv~l~~~~~~~~~~~lV 905 (1119)
+|+..++||+|+||+||+|.+..+++.||||+++... .++.+|+++++.+ .|+||+++++++...+..++|
T Consensus 98 ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv 177 (429)
T 3kvw_A 98 RYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMT 177 (429)
T ss_dssp TEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEE
T ss_pred cEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEE
Confidence 5777899999999999999999999999999996543 4567788888877 577999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCc--eEEEeccccccc
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELE--PKIGDFGMSKLI 983 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~--vkl~DfGla~~~ 983 (1119)
|||++ ++|.+++..... ..+++..+..++.||++||+|||+. +|+||||||+||+++.++. +||+|||+++..
T Consensus 178 ~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~ 252 (429)
T 3kvw_A 178 FELLS-MNLYELIKKNKF-QGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSSCYE 252 (429)
T ss_dssp ECCCC-CBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTCEET
T ss_pred EeccC-CCHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccceec
Confidence 99995 699999987653 2489999999999999999999999 9999999999999999987 999999999765
Q ss_pred cCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 001226 984 SDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPS 1038 (1119)
Q Consensus 984 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~ 1038 (1119)
.. ......||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 253 ~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 253 HQ-----RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp TC-----CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CC-----cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 43 223457899999999999999999999999999999999999999653
No 240
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=4.8e-36 Score=367.98 Aligned_cols=247 Identities=24% Similarity=0.354 Sum_probs=195.8
Q ss_pred ceeeecCCccEEEEEe--CCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEeccCC
Q 001226 840 RIIGKGKHGTVYRTLS--NNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~--~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~ 911 (1119)
++||+|+||.||+|.+ +.+++.||||+++.. ..++.+|+.+++.++|||||++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 5799999999999954 456789999998642 2468899999999999999999999964 568899999999
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCC-CC
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHS-SS 990 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~-~~ 990 (1119)
|+|.+++.... .+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++....... ..
T Consensus 454 g~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~ 527 (635)
T 4fl3_A 454 GPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK 527 (635)
T ss_dssp EEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC------
T ss_pred CCHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccc
Confidence 99999998654 489999999999999999999999 999999999999999999999999999987654322 22
Q ss_pred cccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccccccccccC
Q 001226 991 TRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISF 1069 (1119)
Q Consensus 991 ~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1119)
......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... ..... ..... ..
T Consensus 528 ~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~----i~~~~--------~~-- 591 (635)
T 4fl3_A 528 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAM----LEKGE--------RM-- 591 (635)
T ss_dssp -------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHH----HHTTC--------CC--
T ss_pred cccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHH----HHcCC--------CC--
Confidence 2334457889999999988899999999999999999998 99999753211 10000 00000 00
Q ss_pred CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccc
Q 001226 1070 WDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLND 1111 (1119)
Q Consensus 1070 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~ 1111 (1119)
..+...+.++.+++.+||+.||++||++++|++.|+++..
T Consensus 592 --~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~ 631 (635)
T 4fl3_A 592 --GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYY 631 (635)
T ss_dssp --CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred --CCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence 0011234578899999999999999999999999998754
No 241
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=1.1e-35 Score=367.16 Aligned_cols=245 Identities=25% Similarity=0.331 Sum_probs=201.9
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+|+..++||+|+||.||+|+++.+++.||||++++. ...+..|..++..+ +||+|+++++++.+.+..|+|
T Consensus 341 ~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV 420 (674)
T 3pfq_A 341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV 420 (674)
T ss_dssp TTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEE
T ss_pred cceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEE
Confidence 4567778999999999999999999999999998532 23467788888887 799999999999999999999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++|+|.+++...+ .+++..++.++.||+.||+|||+. +||||||||+|||++.++.+||+|||+++....
T Consensus 421 ~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 494 (674)
T 3pfq_A 421 MEYVNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 494 (674)
T ss_dssp EECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred EeCcCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence 99999999999998764 489999999999999999999999 999999999999999999999999999985432
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
. ........||+.|+|||++.+..|+.++||||+||++|||++|+.||..... . ...... +..
T Consensus 495 ~--~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~--~---~~~~~i----------~~~ 557 (674)
T 3pfq_A 495 D--GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--D---ELFQSI----------MEH 557 (674)
T ss_dssp T--TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--H---HHHHHH----------HSS
T ss_pred C--CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH--H---HHHHHH----------HhC
Confidence 2 2234456899999999999999999999999999999999999999974311 0 111111 111
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCH-----HHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSM-----REVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~-----~ell~~ 1105 (1119)
.... +...+.++.+++.+||+.||++||++ +||++|
T Consensus 558 ~~~~----p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h 598 (674)
T 3pfq_A 558 NVAY----PKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 598 (674)
T ss_dssp CCCC----CTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSS
T ss_pred CCCC----CccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcC
Confidence 1111 11234567899999999999999997 777764
No 242
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=8.4e-36 Score=333.86 Aligned_cols=264 Identities=20% Similarity=0.269 Sum_probs=200.8
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
.+|+..+.||+|+||.||+|.++.+++.||||+++.. ...+.+|+.+++.++||||+++++++..++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 4567778999999999999999999999999998532 2457889999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|++ ++|.+++..... ..+++..+..++.|+++|++|||+. +++||||||+||+++.++.+||+|||.+.......
T Consensus 83 ~~~-~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDASAL-TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp CCS-EEHHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred ccc-CCHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 997 699999987642 3488999999999999999999999 99999999999999999999999999998764321
Q ss_pred CCCcccccccCCCcccccccCCCC-CCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccc------ccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAYSTR-LTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENH------ECI 1060 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~------~~~ 1060 (1119)
.......+|+.|+|||.+.+.. ++.++||||+||++|||++|+.||......+. ............. ...
T Consensus 158 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 234 (299)
T 2r3i_A 158 --RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQ-LFRIFRTLGTPDEVVWPGVTSM 234 (299)
T ss_dssp --BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCCCTTTSTTGGGS
T ss_pred --cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHH-HHHHHHHhCCCchhhhhHhhcC
Confidence 2223456899999999887765 79999999999999999999999975321100 0000000000000 000
Q ss_pred ccccccccCCCchH-----HHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1061 CFLDREISFWDSDD-----QLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1061 ~~~~~~~~~~~~~~-----~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
....+.+..+.... ...+.++.+++.+|++.||++|||++|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~h 284 (299)
T 2r3i_A 235 PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH 284 (299)
T ss_dssp TTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 00001111110000 1124577899999999999999999999984
No 243
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=6.6e-36 Score=332.74 Aligned_cols=242 Identities=22% Similarity=0.335 Sum_probs=195.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|+++.. ...+.+|+..+..+ +||||+++++++.+++..++||
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~ 90 (289)
T 1x8b_A 11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQN 90 (289)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEE
T ss_pred chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence 5788889999999999999999999999999998542 24567788888888 8999999999999999999999
Q ss_pred eccCCCCHHHhhccCCC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC----------------
Q 001226 907 EYMPGGTLFNVLHQNEP-RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE---------------- 969 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~---------------- 969 (1119)
||+++++|.+++..... ...+++..+..++.|+++|++|||+. +|+||||||+||+++.+
T Consensus 91 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~ 167 (289)
T 1x8b_A 91 EYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWA 167 (289)
T ss_dssp ECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC------------------
T ss_pred EecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccccccccccccc
Confidence 99999999999986532 13589999999999999999999999 99999999999999844
Q ss_pred ---CceEEEeccccccccCCCCCCcccccccCCCcccccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCce
Q 001226 970 ---LEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYST-RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDI 1045 (1119)
Q Consensus 970 ---~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 1045 (1119)
..+|++|||.+...... ....||+.|+|||.+.+. .++.++||||+||++|||++|..|+... ..
T Consensus 168 ~~~~~~kl~Dfg~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~~- 236 (289)
T 1x8b_A 168 SNKVMFKIGDLGHVTRISSP------QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG----DQ- 236 (289)
T ss_dssp --CCCEEECCCTTCEETTCS------CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS----HH-
T ss_pred CCceEEEEcccccccccCCc------cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch----hH-
Confidence 47999999999876432 223589999999988765 5668999999999999999998775321 10
Q ss_pred eehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1046 VTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
+...... . .+.+. ...+..+.+++.+||+.||++|||++|++++
T Consensus 237 --~~~~~~~---~-----~~~~~------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 280 (289)
T 1x8b_A 237 --WHEIRQG---R-----LPRIP------QVLSQEFTELLKVMIHPDPERRPSAMALVKH 280 (289)
T ss_dssp --HHHHHTT---C-----CCCCS------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred --HHHHHcC---C-----CCCCC------cccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence 1111000 0 00111 1123467899999999999999999999875
No 244
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=344.75 Aligned_cols=268 Identities=26% Similarity=0.400 Sum_probs=204.9
Q ss_pred HhhCCceeeecCCccEEEEE----eCCCceEEEEEeccccc----ccHHHHHHHHhhcCCCCEEEEeeeeecCC--ceEE
Q 001226 835 RATEGRIIGKGKHGTVYRTL----SNNSRKHWAVKKLNRSE----TNFDVEIRTLSLVRHRNILRIVGSCTKDE--HGFI 904 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~----~~~~~~~vavK~~~~~~----~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~l 904 (1119)
+|+..+.||+|+||.||+|. ...+++.||||++.... ..+.+|+.+++.++||||+++++++...+ ..++
T Consensus 42 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 121 (326)
T 2w1i_A 42 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKL 121 (326)
T ss_dssp GEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEE
T ss_pred HceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEE
Confidence 56677999999999999998 45678999999986432 35789999999999999999999886644 7799
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
||||+++++|.+++..... .+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 122 v~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~ 196 (326)
T 2w1i_A 122 IMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLP 196 (326)
T ss_dssp EECCCTTCBHHHHHHHSTT--SSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEECCCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence 9999999999999987643 489999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCC-CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhc---cccccc
Q 001226 985 DSHSS-STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQ---ENHECI 1060 (1119)
Q Consensus 985 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~ 1060 (1119)
..... .......++..|+|||.+.+..++.++||||+|+++|||++|..|+.....+ .......... ......
T Consensus 197 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 273 (326)
T 2w1i_A 197 QDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMIGNDKQGQMIVFHLI 273 (326)
T ss_dssp SSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHH---HHHHHCTTCCTHHHHHHHH
T ss_pred ccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHH---HHHhhccccchhhhHHHHH
Confidence 43221 1223345778899999988888899999999999999999999987532100 0000000000 000000
Q ss_pred ccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1061 CFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
..+...... ..+...+..+.+++.+||+.||++|||++|+++.|++++++
T Consensus 274 ~~~~~~~~~--~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~ 323 (326)
T 2w1i_A 274 ELLKNNGRL--PRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQ 323 (326)
T ss_dssp HHHHTTCCC--CCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC--CCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 111110000 01112345788999999999999999999999999998765
No 245
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=9.6e-36 Score=338.72 Aligned_cols=253 Identities=20% Similarity=0.244 Sum_probs=176.7
Q ss_pred HHhhC-CceeeecCCccEEEEEeCCCceEEEEEecccccccHHHHHHHHhhcCCCCEEEEeeeeec----CCceEEEEec
Q 001226 834 IRATE-GRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTLSLVRHRNILRIVGSCTK----DEHGFIVTEY 908 (1119)
Q Consensus 834 ~~~~~-~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lV~e~ 908 (1119)
.+|.. .++||+|+||.||+|.++.+++.||||++........+....++.++||||+++++++.. +...++||||
T Consensus 28 ~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~ 107 (336)
T 3fhr_A 28 DDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMEC 107 (336)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEEC
T ss_pred ceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEec
Confidence 45666 357999999999999999999999999997655444444555677899999999999876 4457999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC---CceEEEeccccccccC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE---LEPKIGDFGMSKLISD 985 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~---~~vkl~DfGla~~~~~ 985 (1119)
+++|+|.+++..... ..+++..++.++.|++.|++|||+. +|+||||||+||+++.+ +.+||+|||+++....
T Consensus 108 ~~gg~L~~~l~~~~~-~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~ 183 (336)
T 3fhr_A 108 MEGGELFSRIQERGD-QAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQ 183 (336)
T ss_dssp CTTEEHHHHHHTC-C-CCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC--
T ss_pred cCCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEeccccceeccc
Confidence 999999999987643 3589999999999999999999999 99999999999999864 5599999999986543
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
. ......+|+.|+|||.+.+..++.++||||+||++|||++|+.||............... . ...
T Consensus 184 ~----~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~-~----------~~~ 248 (336)
T 3fhr_A 184 N----ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRR-I----------RLG 248 (336)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------------
T ss_pred c----ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHh-h----------hcc
Confidence 2 223456899999999998888999999999999999999999999754322110000000 0 000
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
............+..+.+++.+||+.||++|||++|++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 288 (336)
T 3fhr_A 249 QYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNH 288 (336)
T ss_dssp --CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred ccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0000000011234567899999999999999999999985
No 246
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=3.7e-36 Score=333.11 Aligned_cols=257 Identities=25% Similarity=0.341 Sum_probs=202.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeee--cCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCT--KDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++. .+...++|
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv 85 (279)
T 2w5a_A 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV 85 (279)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEE
T ss_pred hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEE
Confidence 4677789999999999999999999999999998532 235778999999999999999999874 35678999
Q ss_pred EeccCCCCHHHhhccCCC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCC-----eEecCCCCCCeEeCCCCceEEEeccc
Q 001226 906 TEYMPGGTLFNVLHQNEP-RLVLDWNTRYHIALGIAQGLSYLHYDCVPQ-----IIHRDIKSDNILLDSELEPKIGDFGM 979 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~Dlkp~Nill~~~~~vkl~DfGl 979 (1119)
|||+++++|.+++..... ...+++..++.++.|++.|++|||+. + |+||||||+||+++.++.+||+|||.
T Consensus 86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~ 162 (279)
T 2w5a_A 86 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGL 162 (279)
T ss_dssp EECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCCH
T ss_pred EeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCch
Confidence 999999999999976432 23489999999999999999999998 7 99999999999999999999999999
Q ss_pred cccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccc
Q 001226 980 SKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHEC 1059 (1119)
Q Consensus 980 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1119)
++...... .......+++.|+|||.+.+..++.++||||+|+++|||++|+.||..... .. ........ .
T Consensus 163 ~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~---~~~~i~~~--~- 232 (279)
T 2w5a_A 163 ARILNHDT--SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ--KE---LAGKIREG--K- 232 (279)
T ss_dssp HHHC---C--HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HH---HHHHHHHT--C-
T ss_pred heeecccc--ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH--HH---HHHHHhhc--c-
Confidence 98664321 112335689999999999888899999999999999999999999864311 00 00000000 0
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1060 ICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
.+.+. ...+..+.+++.+||+.||++|||++|+++++....+..
T Consensus 233 ----~~~~~------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~~ 276 (279)
T 2w5a_A 233 ----FRRIP------YRYSDELNEIITRMLNLKDYHRPSVEEILENPLILEHHH 276 (279)
T ss_dssp ----CCCCC------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGGS
T ss_pred ----cccCC------cccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhhcc
Confidence 00011 122456789999999999999999999999876655443
No 247
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=9.1e-36 Score=343.20 Aligned_cols=262 Identities=24% Similarity=0.317 Sum_probs=197.9
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-----ccHHHHHHHHhhcCCCCEEEEeeeeecC-----CceEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-----TNFDVEIRTLSLVRHRNILRIVGSCTKD-----EHGFI 904 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~~l 904 (1119)
+|+..+.||+|+||.||+|.+..+++.||||++.... ..+.+|+++++.++||||+++++++... ...|+
T Consensus 28 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~i 107 (364)
T 3qyz_A 28 RYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYI 107 (364)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEE
T ss_pred cEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEE
Confidence 5777899999999999999999999999999986422 4577899999999999999999998654 46799
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
||||++ ++|.+++... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 108 v~e~~~-~~L~~~l~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~ 179 (364)
T 3qyz_A 108 VQDLME-TDLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVAD 179 (364)
T ss_dssp EEECCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEcccC-cCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEecC
Confidence 999996 5899998764 389999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCC-CcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhh-cccccccc
Q 001226 985 DSHSS-STRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKL-QENHECIC 1061 (1119)
Q Consensus 985 ~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 1061 (1119)
..... .......||+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+. ......... ........
T Consensus 180 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~i~~~~~~~~~~~~~~ 258 (364)
T 3qyz_A 180 PDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ-LNHILGILGSPSQEDLNC 258 (364)
T ss_dssp GGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGH-HHHHHHHHCSCCHHHHHT
T ss_pred CCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHH-HHHHHHHhCCCCHHHHHH
Confidence 43221 12344579999999997654 5589999999999999999999999965321111 000000000 00000000
Q ss_pred c------------ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1062 F------------LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1062 ~------------~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
. ..+....+.......+.++.+++.+||+.||++|||++|++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 314 (364)
T 3qyz_A 259 IINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH 314 (364)
T ss_dssp CCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 0 0000000000001124568899999999999999999999985
No 248
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=1.2e-36 Score=352.15 Aligned_cols=238 Identities=13% Similarity=0.151 Sum_probs=183.9
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHH---HHhhcCCCCEEEEe-------eeee
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIR---TLSLVRHRNILRIV-------GSCT 897 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~---~l~~l~h~niv~l~-------~~~~ 897 (1119)
+|+..+.||+|+||.||+|.+..+++.||||+++.. ...+.+|+. .++.++|||||+++ +++.
T Consensus 74 ~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~ 153 (377)
T 3byv_A 74 TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVK 153 (377)
T ss_dssp EEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEE
T ss_pred eEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhh
Confidence 456678999999999999999988999999998522 245778994 45555799999998 5554
Q ss_pred cCC-----------------ceEEEEeccCCCCHHHhhccCCC----CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEe
Q 001226 898 KDE-----------------HGFIVTEYMPGGTLFNVLHQNEP----RLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIH 956 (1119)
Q Consensus 898 ~~~-----------------~~~lV~e~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH 956 (1119)
+++ ..|+||||+ +|+|.+++...+. ...+++..+..++.||++||+|||+. +|+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH 229 (377)
T 3byv_A 154 DPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLVH 229 (377)
T ss_dssp CTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TEEC
T ss_pred ccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ceec
Confidence 443 278999999 6899999986431 11244688889999999999999999 9999
Q ss_pred cCCCCCCeEeCCCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCC-----------CCCCcchHHHHHHHH
Q 001226 957 RDIKSDNILLDSELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYST-----------RLTEKSDVYSYGVIL 1025 (1119)
Q Consensus 957 ~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~sDvwslG~vl 1025 (1119)
|||||+||+++.++.+||+|||+++.... ......| +.|+|||.+.+. .++.++||||+||++
T Consensus 230 rDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il 303 (377)
T 3byv_A 230 TYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVI 303 (377)
T ss_dssp SCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHH
T ss_pred CCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHH
Confidence 99999999999999999999999985432 2334567 999999998877 799999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1026 FELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1026 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
|||++|+.||........ .. . ... ... ..+..+.+++.+||+.||++|||++|++++
T Consensus 304 ~elltg~~Pf~~~~~~~~--~~---~----------~~~-~~~-------~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 360 (377)
T 3byv_A 304 YWIWCADLPITKDAALGG--SE---W----------IFR-SCK-------NIPQPVRALLEGFLRYPKEDRLLPLQAMET 360 (377)
T ss_dssp HHHHHSSCCC------CC--SG---G----------GGS-SCC-------CCCHHHHHHHHHHTCSSGGGCCCHHHHHTS
T ss_pred HHHHHCCCCCcccccccc--hh---h----------hhh-hcc-------CCCHHHHHHHHHHcCCCchhCCCHHHHhhC
Confidence 999999999964321111 00 0 000 000 113467899999999999999999999873
No 249
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=9.6e-36 Score=341.20 Aligned_cols=262 Identities=19% Similarity=0.291 Sum_probs=200.1
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc---------------------ccHHHHHHHHhhcCCCCEEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE---------------------TNFDVEIRTLSLVRHRNILRI 892 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---------------------~~~~~E~~~l~~l~h~niv~l 892 (1119)
.+|+..+.||+|+||.||+|.+ +++.||||++.... ..+.+|+.+++.++||||+++
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred CceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 3677789999999999999998 68999999984321 668899999999999999999
Q ss_pred eeeeecCCceEEEEeccCCCCHHHh------hccCCCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCCeE
Q 001226 893 VGSCTKDEHGFIVTEYMPGGTLFNV------LHQNEPRLVLDWNTRYHIALGIAQGLSYLHY-DCVPQIIHRDIKSDNIL 965 (1119)
Q Consensus 893 ~~~~~~~~~~~lV~e~~~~gsL~~~------l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~Dlkp~Nil 965 (1119)
++++.+++..++||||+++++|.++ +.... ...+++..+..++.|++.|+.|||+ . +|+||||||+||+
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil 184 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNY-TCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNIL 184 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSS-CCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhcc-ccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEE
Confidence 9999999999999999999999998 55432 3358999999999999999999998 7 9999999999999
Q ss_pred eCCCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCC-CCCC-cchHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 001226 966 LDSELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYST-RLTE-KSDVYSYGVILFELLFRKMPVDPSFGEDT 1043 (1119)
Q Consensus 966 l~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~sDvwslG~vl~elltg~~p~~~~~~~~~ 1043 (1119)
++.++.+||+|||.+...... ......+|+.|+|||.+.+. .++. ++||||+|+++|||++|+.||........
T Consensus 185 ~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~ 260 (348)
T 2pml_X 185 MDKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVE 260 (348)
T ss_dssp ECTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHH
T ss_pred EcCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHH
Confidence 999999999999999876442 23445789999999998877 5666 99999999999999999999975422111
Q ss_pred ceeehhhhhhcccccccccccccccC-CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1044 DIVTWTRWKLQENHECICFLDREISF-WDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.....................+.... ........+..+.+++.+||+.||++|||++|++++
T Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h 323 (348)
T 2pml_X 261 LFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH 323 (348)
T ss_dssp HHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 00000000000000000000000000 000012234578899999999999999999999985
No 250
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=6.5e-36 Score=333.18 Aligned_cols=250 Identities=21% Similarity=0.281 Sum_probs=183.5
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccccc------cHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSET------NFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~------~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|+++.... .+.++...++.++||||+++++++.+++..++|||
T Consensus 7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e 86 (290)
T 3fme_A 7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICME 86 (290)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEE
T ss_pred HhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEe
Confidence 356777999999999999999999999999999864321 23344555778899999999999999999999999
Q ss_pred ccCCCCHHHhhccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 908 YMPGGTLFNVLHQN-EPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
|++ |+|.+++... .....+++..+..++.|++.|++|||+.+ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 87 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 163 (290)
T 3fme_A 87 LMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDD 163 (290)
T ss_dssp CCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC---------
T ss_pred hhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCccccccc
Confidence 997 5888777642 11235899999999999999999999853 8999999999999999999999999999876442
Q ss_pred CCCCcccccccCCCccccccc----CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENA----YSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
. ......||+.|+|||.+ .+..++.++||||+||++|||++|+.||........ .........
T Consensus 164 ~---~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---~~~~~~~~~------- 230 (290)
T 3fme_A 164 V---AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQ---QLKQVVEEP------- 230 (290)
T ss_dssp ---------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHH---HHHHHHHSC-------
T ss_pred c---cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHH---HHHHHhccC-------
Confidence 2 22334689999999985 566789999999999999999999999964211111 111100000
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.+... ....+.++.+++.+||+.||++|||++|++++
T Consensus 231 -~~~~~-----~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~h 267 (290)
T 3fme_A 231 -SPQLP-----ADKFSAEFVDFTSQCLKKNSKERPTYPELMQH 267 (290)
T ss_dssp -CCCCC-----TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred -CCCcc-----cccCCHHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence 00000 11224467899999999999999999999884
No 251
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=7.1e-36 Score=335.12 Aligned_cols=258 Identities=23% Similarity=0.355 Sum_probs=183.1
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEecc
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
+|+..+.||+|+||.||+|.+..+++.||||++... ...+.+|+.+++.++||||+++++++..++..++||||+
T Consensus 16 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 95 (303)
T 2vwi_A 16 DYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLL 95 (303)
T ss_dssp CCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEECC
T ss_pred hhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhc
Confidence 566778999999999999999888999999988532 345778999999999999999999999999999999999
Q ss_pred CCCCHHHhhccC-----CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 910 PGGTLFNVLHQN-----EPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 910 ~~gsL~~~l~~~-----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
++++|.+++... .....+++..+..++.|++.|+.|||+. +++||||||+||+++.++.+||+|||.+....
T Consensus 96 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~ 172 (303)
T 2vwi_A 96 SGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAFLA 172 (303)
T ss_dssp TTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHHHHCC
T ss_pred cCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccchheec
Confidence 999999998742 1123589999999999999999999999 99999999999999999999999999987664
Q ss_pred CCCC---CCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccc
Q 001226 985 DSHS---SSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECI 1060 (1119)
Q Consensus 985 ~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1119)
.... ........||+.|+|||.+.+ ..++.++||||+|+++|||++|+.||........ . ............
T Consensus 173 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~--~~~~~~~~~~~~ 248 (303)
T 2vwi_A 173 TGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKV--L--MLTLQNDPPSLE 248 (303)
T ss_dssp ---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH--H--HHHHTSSCCCTT
T ss_pred cCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhH--H--HHHhccCCCccc
Confidence 3211 112234578999999998765 5689999999999999999999999975321110 0 000000000000
Q ss_pred c-cccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1061 C-FLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1061 ~-~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
. ..+.... ...+..+.+++.+||+.||++|||++|++++
T Consensus 249 ~~~~~~~~~------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 288 (303)
T 2vwi_A 249 TGVQDKEML------KKYGKSFRKMISLCLQKDPEKRPTAAELLRH 288 (303)
T ss_dssp C-----CCC------CCCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred cccccchhh------hhhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 0 0000000 1123467899999999999999999999985
No 252
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=4e-36 Score=345.35 Aligned_cols=257 Identities=23% Similarity=0.306 Sum_probs=179.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecC------Cc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKD------EH 901 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~ 901 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||++... ...+.+|+++++.++||||+++++++... ..
T Consensus 29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~ 108 (367)
T 2fst_X 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND 108 (367)
T ss_dssp TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCe
Confidence 3677779999999999999999999999999998542 23567899999999999999999998654 56
Q ss_pred eEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 902 GFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 902 ~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
.|+|+|++ +++|.+++... .+++..+..++.||++|++|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 109 ~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a~ 180 (367)
T 2fst_X 109 VYLVTHLM-GADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLAR 180 (367)
T ss_dssp CEEEEECC-CEECC-----C----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC-----
T ss_pred EEEEeccc-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeeccccc
Confidence 79999999 78999888753 489999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCCCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccc----
Q 001226 982 LISDSHSSSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQEN---- 1056 (1119)
Q Consensus 982 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~---- 1056 (1119)
.... ......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+ .............
T Consensus 181 ~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~~~g~p~~~~~ 254 (367)
T 2fst_X 181 HTAD-----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID-QLKLILRLVGTPGAELL 254 (367)
T ss_dssp ---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCHHHH
T ss_pred cccc-----cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHH
Confidence 6543 1234578999999998876 678999999999999999999999996532110 0000000000000
Q ss_pred -----ccccccccccccCCCch-----HHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1057 -----HECICFLDREISFWDSD-----DQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1057 -----~~~~~~~~~~~~~~~~~-----~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.....++. .+...... ....+..+.+++.+||+.||++|||++|+++|
T Consensus 255 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 255 KKISSESARNYIQ-SLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp TTCCCHHHHHHHH-TSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHhhhHHHHHHHh-ccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 00000000 00000000 01123567899999999999999999999986
No 253
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=9.7e-36 Score=333.89 Aligned_cols=249 Identities=21% Similarity=0.326 Sum_probs=196.0
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEecc
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++.+++..++||||+
T Consensus 19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 98 (302)
T 2j7t_A 19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFC 98 (302)
T ss_dssp GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECC
T ss_pred cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeC
Confidence 4577779999999999999999999999999998532 345788999999999999999999999999999999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCC
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSS 989 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~ 989 (1119)
++++|.+++..... .+++..+..++.|++.|+.|||+. +++||||||+||+++.++.+||+|||++.......
T Consensus 99 ~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 171 (302)
T 2j7t_A 99 PGGAVDAIMLELDR--GLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTL-- 171 (302)
T ss_dssp TTEEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHH--
T ss_pred CCCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCccccccc--
Confidence 99999999876432 489999999999999999999999 99999999999999999999999999876432211
Q ss_pred CcccccccCCCccccccc-----CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 990 STRSAIVGSLGYIAPENA-----YSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 990 ~~~~~~~gt~~y~aPE~~-----~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
.......||+.|+|||.+ .+..++.++||||+|+++|||++|+.||....... ......... .
T Consensus 172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~----~~~~~~~~~--------~ 239 (302)
T 2j7t_A 172 QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR----VLLKIAKSD--------P 239 (302)
T ss_dssp HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHH----HHHHHHHSC--------C
T ss_pred cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHH----HHHHHhccC--------C
Confidence 112234689999999987 46778999999999999999999999986431100 000000000 0
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
+.. ..+...+..+.+++.+||+.||++|||+++++++
T Consensus 240 ~~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 276 (302)
T 2j7t_A 240 PTL----LTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH 276 (302)
T ss_dssp CCC----SSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred ccc----CCccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 000 0111224567899999999999999999999875
No 254
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.7e-36 Score=348.12 Aligned_cols=196 Identities=24% Similarity=0.409 Sum_probs=153.1
Q ss_pred CceeeecCCccEEEEEeC--CCceEEEEEecccc--cccHHHHHHHHhhcCCCCEEEEeeeee--cCCceEEEEeccCCC
Q 001226 839 GRIIGKGKHGTVYRTLSN--NSRKHWAVKKLNRS--ETNFDVEIRTLSLVRHRNILRIVGSCT--KDEHGFIVTEYMPGG 912 (1119)
Q Consensus 839 ~~~lG~G~fg~Vy~~~~~--~~~~~vavK~~~~~--~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~~lV~e~~~~g 912 (1119)
+++||+|+||+||+|+++ .+++.||||+++.. ...+.+|+.+++.++||||+++++++. .+...|+||||++ +
T Consensus 26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~-~ 104 (405)
T 3rgf_A 26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-H 104 (405)
T ss_dssp SCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS-E
T ss_pred CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC-C
Confidence 678999999999999966 46789999999643 346789999999999999999999995 4678899999996 5
Q ss_pred CHHHhhccCC------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe----CCCCceEEEecccccc
Q 001226 913 TLFNVLHQNE------PRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL----DSELEPKIGDFGMSKL 982 (1119)
Q Consensus 913 sL~~~l~~~~------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill----~~~~~vkl~DfGla~~ 982 (1119)
+|.+++.... ....+++..++.++.||+.||+|||+. +|+||||||+||++ +.++.+||+|||+++.
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~ 181 (405)
T 3rgf_A 105 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFARL 181 (405)
T ss_dssp EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC-
T ss_pred CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEEEECCCcee
Confidence 8888776422 122489999999999999999999999 99999999999999 6778999999999987
Q ss_pred ccCCCC-CCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 001226 983 ISDSHS-SSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPS 1038 (1119)
Q Consensus 983 ~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~ 1038 (1119)
...... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...
T Consensus 182 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 182 FNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp ---------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred cCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 654211 123345678999999998877 45899999999999999999999999754
No 255
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=2.4e-35 Score=339.63 Aligned_cols=273 Identities=21% Similarity=0.237 Sum_probs=188.6
Q ss_pred HHHHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcCCCCEEEEeeeeecCCc------
Q 001226 831 EDVIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVRHRNILRIVGSCTKDEH------ 901 (1119)
Q Consensus 831 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------ 901 (1119)
..+.+|+..+.||+|+||.||+|.+..+++.||||++... .....+|++.++.++||||+++++++...+.
T Consensus 20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 99 (360)
T 3e3p_A 20 KEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDI 99 (360)
T ss_dssp HHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCE
T ss_pred hhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccce
Confidence 4566888999999999999999999999999999988543 2346677777888899999999999865333
Q ss_pred -eEEEEeccCCCCHHHhhcc-CCCCCCCCHHHHHHHHHHHHHHHHHHH--hCCCCCeEecCCCCCCeEeCC-CCceEEEe
Q 001226 902 -GFIVTEYMPGGTLFNVLHQ-NEPRLVLDWNTRYHIALGIAQGLSYLH--YDCVPQIIHRDIKSDNILLDS-ELEPKIGD 976 (1119)
Q Consensus 902 -~~lV~e~~~~gsL~~~l~~-~~~~~~l~~~~~~~i~~~i~~~l~~LH--~~~~~~ivH~Dlkp~Nill~~-~~~vkl~D 976 (1119)
.++||||+++ ++.+.+.. ......+++..+..++.|++.|+.||| +. +|+||||||+||+++. ++.+||+|
T Consensus 100 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~~~kl~D 175 (360)
T 3e3p_A 100 YLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADGTLKLCD 175 (360)
T ss_dssp EEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTTEEEECC
T ss_pred eEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCCcEEEee
Confidence 7899999976 45444332 222335889999999999999999999 77 9999999999999997 89999999
Q ss_pred ccccccccCCCCCCcccccccCCCcccccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcc
Q 001226 977 FGMSKLISDSHSSSTRSAIVGSLGYIAPENAYST-RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 977 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
||+++...... ......||+.|+|||.+.+. .++.++||||+||++|||++|+.||....... ............
T Consensus 176 fg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~~ 251 (360)
T 3e3p_A 176 FGSAKKLSPSE---PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAG-QLHEIVRVLGCP 251 (360)
T ss_dssp CTTCBCCCTTS---CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCC
T ss_pred CCCceecCCCC---CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHH-HHHHHHHHcCCC
Confidence 99998765432 22345689999999988655 48999999999999999999999997532110 000000000000
Q ss_pred c----------ccccccccccccC----CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH--HHcccc
Q 001226 1056 N----------HECICFLDREISF----WDSDDQLKALRLLELALECTRQVADMRPSMREVVGF--LIKLND 1111 (1119)
Q Consensus 1056 ~----------~~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~--L~~~~~ 1111 (1119)
. .......+..... ........+..+.+++.+||+.||++|||++|+++| ++++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~ 323 (360)
T 3e3p_A 252 SREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHD 323 (360)
T ss_dssp CHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGC
T ss_pred CHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCC
Confidence 0 0000000000000 000011135678999999999999999999999986 444433
No 256
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=3.1e-35 Score=343.59 Aligned_cols=263 Identities=23% Similarity=0.273 Sum_probs=200.2
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc---ccHHHHHHHHhhcC--------CCCEEEEeeeee----c
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE---TNFDVEIRTLSLVR--------HRNILRIVGSCT----K 898 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---~~~~~E~~~l~~l~--------h~niv~l~~~~~----~ 898 (1119)
.+|+..++||+|+||+||+|++..+++.||||+++... ..+.+|+++++.++ |+||+++++++. .
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~ 116 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVN 116 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETT
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCC
Confidence 36777899999999999999999999999999997543 45778999999885 788999999987 5
Q ss_pred CCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCC--------
Q 001226 899 DEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSEL-------- 970 (1119)
Q Consensus 899 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~-------- 970 (1119)
+...++||||+ ++++.+++.... ...+++..++.++.||++||+|||+++ +|+||||||+||+++.++
T Consensus 117 ~~~~~lv~e~~-~~~l~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~~ 192 (397)
T 1wak_A 117 GTHICMVFEVL-GHHLLKWIIKSN-YQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLAA 192 (397)
T ss_dssp EEEEEEEECCC-CCBHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHHH
T ss_pred CceEEEEEecc-CccHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhhh
Confidence 56789999999 667766666543 235899999999999999999999864 899999999999999775
Q ss_pred -----------------------------------------ceEEEeccccccccCCCCCCcccccccCCCcccccccCC
Q 001226 971 -----------------------------------------EPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYS 1009 (1119)
Q Consensus 971 -----------------------------------------~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 1009 (1119)
.+||+|||.++..... .....||+.|+|||.+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~~~~ 267 (397)
T 1wak_A 193 EATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEVLIG 267 (397)
T ss_dssp HHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHHHHT
T ss_pred hhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChhhcC
Confidence 7999999999876432 234578999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCcee--e---hhhhhhcc-------ccccccccccc--------ccC
Q 001226 1010 TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIV--T---WTRWKLQE-------NHECICFLDRE--------ISF 1069 (1119)
Q Consensus 1010 ~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~--~---~~~~~~~~-------~~~~~~~~~~~--------~~~ 1069 (1119)
..++.++||||+||++|||++|+.||........... . ........ ......++... ...
T Consensus 268 ~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (397)
T 1wak_A 268 SGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKP 347 (397)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCC
T ss_pred CCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCC
Confidence 8999999999999999999999999976533321100 0 00000000 00000000000 000
Q ss_pred ---------CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1070 ---------WDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1070 ---------~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
........+..+.+++.+||+.||++|||++|+++|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 392 (397)
T 1wak_A 348 WGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH 392 (397)
T ss_dssp CCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred cchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence 001134556788999999999999999999999875
No 257
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=3.5e-35 Score=326.64 Aligned_cols=247 Identities=26% Similarity=0.358 Sum_probs=199.4
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
.+|+..+.||+|+||.||+|.+..+++.||+|++... ...+.+|+.++++++||||+++++++.+.+..++|||
T Consensus 22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 101 (287)
T 2wei_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE 101 (287)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEE
Confidence 5788889999999999999999988999999998432 3457889999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC---CceEEEecccccccc
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE---LEPKIGDFGMSKLIS 984 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~---~~vkl~DfGla~~~~ 984 (1119)
|+++++|.+++.... .+++..+..++.|++.|+.|||+. +++||||||+||+++.+ +.+||+|||++....
T Consensus 102 ~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~ 175 (287)
T 2wei_A 102 LYTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175 (287)
T ss_dssp CCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBC
T ss_pred ccCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcceeec
Confidence 999999999987654 489999999999999999999999 99999999999999764 469999999998664
Q ss_pred CCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
... ......+|+.|+|||.+.+ .++.++||||+|+++|||++|+.||...... . ...... .
T Consensus 176 ~~~---~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~---~~~~~~----------~ 236 (287)
T 2wei_A 176 QNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEY--D---ILKRVE----------T 236 (287)
T ss_dssp CCS---SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--H---HHHHHH----------H
T ss_pred CCC---ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHH--H---HHHHHH----------c
Confidence 422 2233468899999998765 4899999999999999999999998643110 0 000000 0
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.............+..+.+++.+|++.||++|||++|++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 277 (287)
T 2wei_A 237 GKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (287)
T ss_dssp CCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred CCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence 00000001111234567899999999999999999999984
No 258
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=3.2e-35 Score=335.47 Aligned_cols=260 Identities=20% Similarity=0.301 Sum_probs=199.7
Q ss_pred HhhCCceeeecCCccEEEEEe-CCCceEEEEEeccccc---ccHHHHHHHHhhcCCC------CEEEEeeeeecCCceEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLS-NNSRKHWAVKKLNRSE---TNFDVEIRTLSLVRHR------NILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~-~~~~~~vavK~~~~~~---~~~~~E~~~l~~l~h~------niv~l~~~~~~~~~~~l 904 (1119)
+|+..+.||+|+||.||+|.+ ..+++.||||+++... ..+.+|+.+++.++|+ +++++++++.+++..++
T Consensus 15 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (339)
T 1z57_A 15 RYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICI 94 (339)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEE
T ss_pred ceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEE
Confidence 577779999999999999998 5678999999986533 4577899999888655 59999999999999999
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC----------------
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS---------------- 968 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---------------- 968 (1119)
||||+ +++|.+++..... ..+++..+..++.|+++|++|||+. +|+||||||+||+++.
T Consensus 95 v~e~~-~~~l~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~ 169 (339)
T 1z57_A 95 VFELL-GLSTYDFIKENGF-LPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKRDER 169 (339)
T ss_dssp EEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----CEEE
T ss_pred EEcCC-CCCHHHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCccccccc
Confidence 99999 8999999987652 3588999999999999999999999 9999999999999987
Q ss_pred ---CCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCce
Q 001226 969 ---ELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDI 1045 (1119)
Q Consensus 969 ---~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 1045 (1119)
++.+||+|||+++.... ......||+.|+|||.+.+..++.++||||+||++|||++|+.||......+. .
T Consensus 170 ~~~~~~~kl~Dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-~ 243 (339)
T 1z57_A 170 TLINPDIKVVDFGSATYDDE-----HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEH-L 243 (339)
T ss_dssp EESCCCEEECCCSSCEETTS-----CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHH-H
T ss_pred cccCCCceEeeCcccccCcc-----ccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHH-H
Confidence 66899999999986543 22345789999999999999999999999999999999999999975321110 0
Q ss_pred eehhhhhhccccc------cccccc--------------------ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCH
Q 001226 1046 VTWTRWKLQENHE------CICFLD--------------------REISFWDSDDQLKALRLLELALECTRQVADMRPSM 1099 (1119)
Q Consensus 1046 ~~~~~~~~~~~~~------~~~~~~--------------------~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~ 1099 (1119)
............. ...... +............+.++.+++.+||+.||++|||+
T Consensus 244 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~ 323 (339)
T 1z57_A 244 AMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITL 323 (339)
T ss_dssp HHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCH
Confidence 0000000000000 000000 00000001122345678999999999999999999
Q ss_pred HHHHHH
Q 001226 1100 REVVGF 1105 (1119)
Q Consensus 1100 ~ell~~ 1105 (1119)
+|++++
T Consensus 324 ~ell~h 329 (339)
T 1z57_A 324 REALKH 329 (339)
T ss_dssp HHHTTS
T ss_pred HHHhcC
Confidence 999976
No 259
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.8e-34 Score=350.78 Aligned_cols=317 Identities=19% Similarity=0.145 Sum_probs=238.7
Q ss_pred cCCcccEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCccccccccccee
Q 001226 94 KNQHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESI 173 (1119)
Q Consensus 94 ~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 173 (1119)
.+.+++.|++++|.+++..+..++.+++|++|+|++|.+++..|..++.+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46789999999999986556668999999999999999998888899999999999999999998888888999999999
Q ss_pred eecccccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCC
Q 001226 174 GFHNNFLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGG 253 (1119)
Q Consensus 174 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~ 253 (1119)
+|++|.+++..+..|+.+++|++|+|++|++++.+ |..++++++|++|++++|.+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-----------------------DDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-----------------------TTTTTTCTTCCEEECTTSCCSB
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC-----------------------hhhhhcCCcCcEEECcCCCCCC
Confidence 99999999777777899999999999999887543 3457778888888888888875
Q ss_pred ccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccC
Q 001226 254 AISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVG 333 (1119)
Q Consensus 254 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 333 (1119)
. .+..+++|+.|++++|.+++ +...++|++|++++|.++...+.. .++|+.|+|++|.+++ +..+.
T Consensus 186 ~----~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 186 V----DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp C----CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGG
T ss_pred c----ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhhc
Confidence 3 24556778888888887764 234457778888888777544332 2567777777777764 35667
Q ss_pred CCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEE
Q 001226 334 NLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVEL 413 (1119)
Q Consensus 334 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 413 (1119)
.+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 77777777777777776667777777777777777777764 4555566677777777777776 455556667777777
Q ss_pred EeecccccccCCccccCCCCcCEEEccCccCcccchhhh
Q 001226 414 ALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALEL 452 (1119)
Q Consensus 414 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 452 (1119)
+|++|++++. + +..+++|+.|++++|++++.....+
T Consensus 330 ~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 330 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred ECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHHH
Confidence 7777777643 2 5556677777777777665443333
No 260
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=334.29 Aligned_cols=248 Identities=24% Similarity=0.343 Sum_probs=192.2
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc---ccccHHHHHHHHhhc-CCCCEEEEeeeeec------CCceEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR---SETNFDVEIRTLSLV-RHRNILRIVGSCTK------DEHGFI 904 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~---~~~~~~~E~~~l~~l-~h~niv~l~~~~~~------~~~~~l 904 (1119)
+|+..+.||+|+||.||+|.+..+++.||||++.. ....+.+|+.+++++ +||||+++++++.. ++..++
T Consensus 25 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~l 104 (326)
T 2x7f_A 25 IFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWL 104 (326)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEE
T ss_pred cEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEE
Confidence 56677999999999999999998899999999853 345688999999998 79999999999976 467899
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
||||+++++|.+++.... ...+++..+..++.|++.|+.|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 105 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 180 (326)
T 2x7f_A 105 VMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD 180 (326)
T ss_dssp EEECCTTEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCTTTC---
T ss_pred EEEcCCCCcHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEeeCcCceecC
Confidence 999999999999998754 23588999999999999999999999 99999999999999999999999999998664
Q ss_pred CCCCCCcccccccCCCcccccccC-----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccc
Q 001226 985 DSHSSSTRSAIVGSLGYIAPENAY-----STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHEC 1059 (1119)
Q Consensus 985 ~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1119)
... .......||+.|+|||.+. +..++.++||||+||++|||++|+.||...... ..... .... .
T Consensus 181 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~~~~-~~~~--~- 250 (326)
T 2x7f_A 181 RTV--GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM----RALFL-IPRN--P- 250 (326)
T ss_dssp ------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHHH-HHHS--C-
T ss_pred cCc--cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH----HHHHH-hhcC--c-
Confidence 321 1223457899999999886 567899999999999999999999998643110 00000 0000 0
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1060 ICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.+... ....+..+.+++.+||+.||++||++++++++
T Consensus 251 ----~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 287 (326)
T 2x7f_A 251 ----APRLK-----SKKWSKKFQSFIESCLVKNHSQRPATEQLMKH 287 (326)
T ss_dssp ----CCCCS-----CSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred ----cccCC-----ccccCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 00000 01123467899999999999999999999885
No 261
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=8e-35 Score=330.26 Aligned_cols=263 Identities=22% Similarity=0.275 Sum_probs=197.9
Q ss_pred HHhhCCceeeecCCccEEEEEeC-CCceEEEEEecccc------cccHHHHHHHHhhc---CCCCEEEEeeeee-----c
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSN-NSRKHWAVKKLNRS------ETNFDVEIRTLSLV---RHRNILRIVGSCT-----K 898 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~~~vavK~~~~~------~~~~~~E~~~l~~l---~h~niv~l~~~~~-----~ 898 (1119)
.+|+..+.||+|+||.||+|.+. .+++.||+|+++.. ...+.+|+.+++.+ +||||+++++++. .
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~ 90 (326)
T 1blx_A 11 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR 90 (326)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred hceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCC
Confidence 35777899999999999999985 67899999988532 23577888888777 8999999999987 4
Q ss_pred CCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecc
Q 001226 899 DEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFG 978 (1119)
Q Consensus 899 ~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfG 978 (1119)
....++||||++ |+|.+++..... ..+++..+..++.|++.|+.|||+. ||+||||||+||+++.++.+||+|||
T Consensus 91 ~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~Dfg 165 (326)
T 1blx_A 91 ETKLTLVFEHVD-QDLTTYLDKVPE-PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFG 165 (326)
T ss_dssp EEEEEEEEECCS-CBHHHHHHHSCT-TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCC
T ss_pred CceEEEEEecCC-CCHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEecCc
Confidence 567899999997 699999987653 2489999999999999999999999 99999999999999999999999999
Q ss_pred ccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhh-hhcccc
Q 001226 979 MSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRW-KLQENH 1057 (1119)
Q Consensus 979 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~-~~~~~~ 1057 (1119)
+++..... .......+|+.|+|||.+.+..++.++||||+||++|||++|+.||......+. ....... ......
T Consensus 166 ~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~i~~~~~~~~~~ 241 (326)
T 1blx_A 166 LARIYSFQ---MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQ-LGKILDVIGLPGEE 241 (326)
T ss_dssp SCCCCCGG---GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCCCGG
T ss_pred ccccccCC---CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHH-HHHHHHHcCCCCcc
Confidence 99866432 123345789999999999999999999999999999999999999975321100 0000000 000000
Q ss_pred ccc--------ccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1058 ECI--------CFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1058 ~~~--------~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
... .+...............+..+.+++.+||+.||++|||++|++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 297 (326)
T 1blx_A 242 DWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH 297 (326)
T ss_dssp GSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred cCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 000 000000000000001224567899999999999999999999975
No 262
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.3e-34 Score=331.33 Aligned_cols=309 Identities=19% Similarity=0.170 Sum_probs=147.4
Q ss_pred CCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEE
Q 001226 263 LLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLL 342 (1119)
Q Consensus 263 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 342 (1119)
+.++++|++++|.++...+..|..+++|++|++++|.++++.+..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 34555555655555544444455555555555555555555555555555555555555555544444455555555555
Q ss_pred ccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeecccccc
Q 001226 343 LFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTG 422 (1119)
Q Consensus 343 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 422 (1119)
+++|+++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------- 180 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------------------- 180 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-----------------------
Confidence 555555533333344555555555555555444444444444455555544444432
Q ss_pred cCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCcccc
Q 001226 423 RIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIG 502 (1119)
Q Consensus 423 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~ 502 (1119)
.+..+++|+.|++++|.+++. ...+.|++|++++|.++.. |.. ..++|+.|++++|++++. ..+.
T Consensus 181 ----~~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 181 ----DLSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp ----CGGGCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGG
T ss_pred ----ccccccccceeeccccccccc------CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHc
Confidence 133344444445554444421 0122344444444444322 111 123455555555555532 3455
Q ss_pred ccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEE
Q 001226 503 KCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQIL 582 (1119)
Q Consensus 503 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 582 (1119)
.+++|++|++++|.+++..|..+..+++|+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 55555555555555555445555555555555555544442 3333344444445555555444 334444444444444
Q ss_pred EcccCcccCcCCcccccCCCCcEEeccCcccc
Q 001226 583 RLSANKLDGRIPYELGKCTKMIKLDLSDNYLA 614 (1119)
Q Consensus 583 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 614 (1119)
+|++|++.. +| +..+++|+.|++++|+++
T Consensus 324 ~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 324 YLDHNSIVT-LK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ECCSSCCCC-CC--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCccce-eC--chhhccCCEEEcCCCCcc
Confidence 444444442 22 333444444444444444
No 263
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=5.1e-35 Score=328.05 Aligned_cols=250 Identities=26% Similarity=0.419 Sum_probs=189.9
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc---ccHHHHHHHHhhcCCCCEEEEeeeeec------------
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE---TNFDVEIRTLSLVRHRNILRIVGSCTK------------ 898 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---~~~~~E~~~l~~l~h~niv~l~~~~~~------------ 898 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||+++... ..+.+|+.+++.++||||+++++++.+
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~ 85 (303)
T 1zy4_A 6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVK 85 (303)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------
T ss_pred ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccc
Confidence 46788899999999999999999899999999986432 457789999999999999999998754
Q ss_pred -CCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEec
Q 001226 899 -DEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDF 977 (1119)
Q Consensus 899 -~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~Df 977 (1119)
.+..|+||||+++++|.+++..... .+++..++.++.|+++|++|||+. +|+||||||+||+++.++.+|++||
T Consensus 86 ~~~~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl~df 160 (303)
T 1zy4_A 86 KKSTLFIQMEYCENGTLYDLIHSENL--NQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDF 160 (303)
T ss_dssp CEEEEEEEEECCCSCBHHHHHHHSCG--GGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCC
T ss_pred cCCceEEEEecCCCCCHHHhhhcccc--ccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEEeeC
Confidence 3567999999999999999986542 478889999999999999999999 9999999999999999999999999
Q ss_pred cccccccCCCC------------CCcccccccCCCcccccccCCC-CCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCc
Q 001226 978 GMSKLISDSHS------------SSTRSAIVGSLGYIAPENAYST-RLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTD 1044 (1119)
Q Consensus 978 Gla~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 1044 (1119)
|.++....... ........||+.|+|||.+.+. .++.++||||+||++|||++ ||.... .
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~----~ 233 (303)
T 1zy4_A 161 GLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM----E 233 (303)
T ss_dssp CCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH----H
T ss_pred cchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCch----h
Confidence 99986643210 1122345689999999988754 78999999999999999998 543210 0
Q ss_pred eeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1045 IVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
........... ...+. .......+..+.+++.+||+.||++|||++|++++
T Consensus 234 ~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 234 RVNILKKLRSV--------SIEFP--PDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp HHHHHHHHHST--------TCCCC--TTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHHHHHhcccc--------ccccC--ccccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 00000000000 00000 00111223457899999999999999999999985
No 264
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.3e-35 Score=338.73 Aligned_cols=249 Identities=21% Similarity=0.307 Sum_probs=192.8
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-----ccHHHHHHH-HhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-----TNFDVEIRT-LSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+|+..+.||+|+||.||+|.+..+++.||||+++... .++..|+.. ++.++||||+++++++.+++..++||||
T Consensus 52 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~ 131 (340)
T 3an0_A 52 DLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMEL 131 (340)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEECC
T ss_pred heeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEHHH
Confidence 4556688999999999999999999999999986432 233445554 6778999999999999999999999999
Q ss_pred cCCCCHHHhhccCC-CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 909 MPGGTLFNVLHQNE-PRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
+++ +|.+++.... ....+++..+..++.||+.|++|||+.. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 132 ~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~--~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~- 207 (340)
T 3an0_A 132 MDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDS- 207 (340)
T ss_dssp CSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSCCSTTEEECSTTCEEECCCSHHHHHSCH-
T ss_pred hhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeCCCceecccc-
Confidence 975 9988887421 1235899999999999999999999743 8999999999999999999999999999866431
Q ss_pred CCCcccccccCCCcccccccC----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAY----STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~----~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
.......||+.|+|||.+. ...++.++||||+||++|||++|+.||....... ..........
T Consensus 208 --~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~---~~~~~~~~~~-------- 274 (340)
T 3an0_A 208 --VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF---QQLKQVVEEP-------- 274 (340)
T ss_dssp --HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHH---HHHHHHHHSC--------
T ss_pred --cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchH---HHHHHHhcCC--------
Confidence 1222347899999999864 3478899999999999999999999997431110 0000000000
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.+.. .....+..+.+++.+||+.||++|||++|++++
T Consensus 275 ~~~~-----~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 311 (340)
T 3an0_A 275 SPQL-----PADKFSAEFVDFTSQCLKKNSKERPTYPELMQH 311 (340)
T ss_dssp CCCC-----CGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred CCCC-----CcccCCHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 0000 011224568899999999999999999999984
No 265
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=2.8e-35 Score=339.81 Aligned_cols=256 Identities=20% Similarity=0.256 Sum_probs=192.3
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCce------
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHG------ 902 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~------ 902 (1119)
+|...+.||+|+||.||+|.+..+++.||||++... ...+.+|+.+++.++||||+++++++...+..
T Consensus 43 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 122 (371)
T 4exu_A 43 TYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDF 122 (371)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCC
T ss_pred cEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeE
Confidence 566778999999999999999999999999998643 24567899999999999999999999877654
Q ss_pred EEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccc
Q 001226 903 FIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKL 982 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~ 982 (1119)
++||||++ ++|.+++.. .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 123 ~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 193 (371)
T 4exu_A 123 YLVMPFMQ-TDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARH 193 (371)
T ss_dssp EEEEECCC-EEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred EEEEcccc-ccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence 99999996 688887743 388999999999999999999999 999999999999999999999999999986
Q ss_pred ccCCCCCCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccc
Q 001226 983 ISDSHSSSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECIC 1061 (1119)
Q Consensus 983 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1119)
... ......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+. .................
T Consensus 194 ~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~~~i~~~~~~~~~~~~~ 267 (371)
T 4exu_A 194 ADA-----EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ-LTQILKVTGVPGTEFVQ 267 (371)
T ss_dssp -----------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCCCHHHHT
T ss_pred ccc-----CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHhCCCcHHHHH
Confidence 543 2234568999999998877 6789999999999999999999999975321100 00000000000000000
Q ss_pred cc--------cccccCCC-----chHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1062 FL--------DREISFWD-----SDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1062 ~~--------~~~~~~~~-----~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.+ ........ ......+..+.+++.+||+.||++|||++|++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 324 (371)
T 4exu_A 268 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 324 (371)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence 00 00000000 0001224578999999999999999999999986
No 266
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.1e-34 Score=352.49 Aligned_cols=334 Identities=19% Similarity=0.193 Sum_probs=209.6
Q ss_pred CCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEE
Q 001226 359 CGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLS 438 (1119)
Q Consensus 359 l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 438 (1119)
+.+++.|++++|.++...+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45677777777777755555566777777777777777766666777777777777777777766666667777777777
Q ss_pred ccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccc
Q 001226 439 LAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQ 518 (1119)
Q Consensus 439 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 518 (1119)
|++|.|+ .+|...+..+++|+.|+| ++|.+++..|..++++++|+.|+|++|.++
T Consensus 130 L~~n~l~-~l~~~~~~~l~~L~~L~L------------------------s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNTPKLTTLSM------------------------SNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEEC------------------------CSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred eeCCCCC-CCCHHHhccCCCCCEEEe------------------------eCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 7777666 333333333444444444 444444444444444555555555555544
Q ss_pred cCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccc
Q 001226 519 GSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELG 598 (1119)
Q Consensus 519 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 598 (1119)
+.. +..+++|+.|++++|.+++ +....+|+.|++++|.++. +|..+. ++|+.|+|++|.+++ +..+.
T Consensus 185 ~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~-~~~~~~--~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 185 HVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV-VRGPVN--VELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp BCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE-EECSCC--SCCCEEECCSSCCCC--CGGGG
T ss_pred CcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc-cccccC--CCCCEEECCCCCCCC--Chhhc
Confidence 321 2334445555555554442 1223456666666666653 333222 466777777777764 35566
Q ss_pred cCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccce
Q 001226 599 KCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSI 678 (1119)
Q Consensus 599 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~ 678 (1119)
.+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++ +|..+..+++|+.|+
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~----------------------- 307 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD----------------------- 307 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEE-----------------------
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEE-----------------------
Confidence 67777777777777776666667777777777777777764 455556666666644
Q ss_pred eeeccccccCCcccccccccccceeeccCceecccCCccccccccceEEecccccccccCCCccccccccCCccccCCcc
Q 001226 679 LNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVNNMVSLYFVNISFNHFSGKLPASWTTLMVSYPGSFLGNSE 758 (1119)
Q Consensus 679 L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~l~~l~ls~N~~~g~~p~~~~~~~~~~~~~~~~n~~ 758 (1119)
|++|+++ .+|..++.+++|+.|+|++|+|++. | +..+++|+.|++++|++++..+.. -+......++.++..
T Consensus 308 --Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~--~~~~~~~~~~~~~~~ 379 (597)
T 3oja_B 308 --LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA--LFRNVARPAVDDADQ 379 (597)
T ss_dssp --CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH--HTTTCCTTTBCCCCC
T ss_pred --CCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHH--HHHHHhhhccccccc
Confidence 4455555 5677778888888888988888753 3 667788888999999988865432 233345667788888
Q ss_pred cccC
Q 001226 759 LCRQ 762 (1119)
Q Consensus 759 ~c~~ 762 (1119)
.|+.
T Consensus 380 ~C~~ 383 (597)
T 3oja_B 380 HCKI 383 (597)
T ss_dssp CCCT
T ss_pred cCCc
Confidence 8875
No 267
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=1.5e-35 Score=330.53 Aligned_cols=257 Identities=23% Similarity=0.356 Sum_probs=193.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCC-C--ceEEEEEecccc-------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNN-S--RKHWAVKKLNRS-------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~-~--~~~vavK~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 903 (1119)
.+|+..+.||+|+||.||+|.+.. + +..||||+++.. ...+.+|+++++.++||||+++++++.++. .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 367778999999999999998643 2 346999988532 245778999999999999999999998765 88
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+||||+++++|.+++..... .+++..+..++.|+++|+.|||+. +++||||||+||+++.++.+||+|||++...
T Consensus 97 ~v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~ 171 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKHQG--HFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRAL 171 (291)
T ss_dssp EEEECCTTCBHHHHHHHHGG--GSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred eeEecccCCCHHHHHHhccC--CcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEccccccccc
Confidence 99999999999999986532 488999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCC-CcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhcccccccc
Q 001226 984 SDSHSS-STRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECIC 1061 (1119)
Q Consensus 984 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1119)
...... .......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... ...........
T Consensus 172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-----~~~~~~~~~~~---- 242 (291)
T 1u46_A 172 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS-----QILHKIDKEGE---- 242 (291)
T ss_dssp CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----HHHHHHHTSCC----
T ss_pred cccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH-----HHHHHHHccCC----
Confidence 543221 12234567889999999888888999999999999999999 99998643111 00000000000
Q ss_pred cccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1062 FLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
... .....+..+.+++.+||+.||++|||+++++++|+++.+..
T Consensus 243 ----~~~----~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 286 (291)
T 1u46_A 243 ----RLP----RPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTD 286 (291)
T ss_dssp ----CCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred ----CCC----CCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCccc
Confidence 000 01123457889999999999999999999999999887654
No 268
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=9.6e-35 Score=336.86 Aligned_cols=197 Identities=25% Similarity=0.308 Sum_probs=169.6
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc---ccHHHHHHHHhhcC-CC-----CEEEEeeeeecCCceEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE---TNFDVEIRTLSLVR-HR-----NILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~~~~l 904 (1119)
.+|+..+.||+|+||+||+|.+..+++.||||+++... .++.+|+++++.++ |+ +++++++++..++..++
T Consensus 54 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~l 133 (382)
T 2vx3_A 54 DRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCL 133 (382)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEE
T ss_pred eeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEE
Confidence 46777899999999999999999999999999997543 45667888888875 44 49999999999999999
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC--CCCceEEEecccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD--SELEPKIGDFGMSKL 982 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~--~~~~vkl~DfGla~~ 982 (1119)
||||++ ++|.+++..... ..+++..+..++.|++.|+.|||++ ..+|+||||||+||+++ .++.+||+|||+++.
T Consensus 134 v~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~ 210 (382)
T 2vx3_A 134 VFEMLS-YNLYDLLRNTNF-RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQ 210 (382)
T ss_dssp EEECCC-CBHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEE
T ss_pred EEecCC-CCHHHHHhhcCc-CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCcee
Confidence 999996 599999987642 2489999999999999999999952 22899999999999995 478899999999987
Q ss_pred ccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Q 001226 983 ISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPS 1038 (1119)
Q Consensus 983 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~ 1038 (1119)
.... .....+|+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 211 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 211 LGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp TTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cccc-----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 6432 23457899999999999999999999999999999999999999753
No 269
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=1.6e-35 Score=334.77 Aligned_cols=236 Identities=22% Similarity=0.364 Sum_probs=196.0
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----------cccHHHHHHHHhhcC--CCCEEEEeeeeecCCce
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----------ETNFDVEIRTLSLVR--HRNILRIVGSCTKDEHG 902 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----------~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~ 902 (1119)
+|+..+.||+|+||.||+|.+..+++.||||+++.. ...+.+|+.+++.++ ||||+++++++.+++..
T Consensus 44 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~ 123 (320)
T 3a99_A 44 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSF 123 (320)
T ss_dssp TEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEE
T ss_pred ceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCcE
Confidence 577779999999999999999999999999998532 245778999999996 59999999999999999
Q ss_pred EEEEeccCC-CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC-CCCceEEEecccc
Q 001226 903 FIVTEYMPG-GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD-SELEPKIGDFGMS 980 (1119)
Q Consensus 903 ~lV~e~~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~-~~~~vkl~DfGla 980 (1119)
++|||++.+ ++|.+++.... .+++..+..++.|+++|++|||+. +|+||||||+||+++ .++.+||+|||++
T Consensus 124 ~lv~e~~~~~~~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~ 197 (320)
T 3a99_A 124 VLILERPEPVQDLFDFITERG---ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSG 197 (320)
T ss_dssp EEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTC
T ss_pred EEEEEcCCCCccHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeCccc
Confidence 999999976 89999998754 489999999999999999999999 999999999999999 7899999999999
Q ss_pred ccccCCCCCCcccccccCCCcccccccCCCCC-CCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccc
Q 001226 981 KLISDSHSSSTRSAIVGSLGYIAPENAYSTRL-TEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHEC 1059 (1119)
Q Consensus 981 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1119)
+..... ......||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||.... . ... ...
T Consensus 198 ~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~----~---~~~----~~~-- 260 (320)
T 3a99_A 198 ALLKDT----VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE----E---IIR----GQV-- 260 (320)
T ss_dssp EECCSS----CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----H---HHH----CCC--
T ss_pred cccccc----cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh----h---hhc----ccc--
Confidence 876542 2233568999999998876665 688999999999999999999986320 0 000 000
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1060 ICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
... ...+.++.+++.+||+.||++|||++|++++
T Consensus 261 --~~~----------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 294 (320)
T 3a99_A 261 --FFR----------QRVSSECQHLIRWCLALRPSDRPTFEEIQNH 294 (320)
T ss_dssp --CCS----------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred --ccc----------ccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000 0123467899999999999999999999875
No 270
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=4.7e-35 Score=360.50 Aligned_cols=254 Identities=26% Similarity=0.372 Sum_probs=200.6
Q ss_pred HHhhCCceeeecCCccEEEEEeCCC---ceEEEEEeccccc-----ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNS---RKHWAVKKLNRSE-----TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~---~~~vavK~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 905 (1119)
.+|+..+.||+|+||.||+|.+..+ +..||||+++... ..+.+|+.+++.++||||+++++++. ++..++|
T Consensus 390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~lv 468 (656)
T 2j0j_A 390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWII 468 (656)
T ss_dssp GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEE
T ss_pred ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEEE
Confidence 3577789999999999999998643 4679999986432 45788999999999999999999985 4568999
Q ss_pred EeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccC
Q 001226 906 TEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 906 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~ 985 (1119)
|||+++|+|.+++...+. .+++..+..++.|+++|+.|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 469 ~E~~~~g~L~~~l~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~~~~ 543 (656)
T 2j0j_A 469 MELCTLGELRSFLQVRKF--SLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 543 (656)
T ss_dssp EECCTTCBHHHHHHHTTT--TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC
T ss_pred EEcCCCCcHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCeecCC
Confidence 999999999999986542 489999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICFLD 1064 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1119)
... .......+|+.|+|||.+.+..++.++||||+||++|||++ |..||...... +... ... ...
T Consensus 544 ~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~--~~~~---~i~-~~~------- 609 (656)
T 2j0j_A 544 STY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIG---RIE-NGE------- 609 (656)
T ss_dssp -----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHH---HHH-HTC-------
T ss_pred Ccc-eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH--HHHH---HHH-cCC-------
Confidence 322 22234467889999999988899999999999999999997 99998643111 1000 000 000
Q ss_pred ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHccccc
Q 001226 1065 REISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDK 1112 (1119)
Q Consensus 1065 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~ 1112 (1119)
... .+...+..+.+++.+||+.||++|||++|+++.|+++.++
T Consensus 610 -~~~----~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 610 -RLP----MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp -CCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -CCC----CCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 000 0112235678999999999999999999999999998654
No 271
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=331.83 Aligned_cols=262 Identities=21% Similarity=0.276 Sum_probs=188.5
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCCCEEEEeeeee-------------
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHRNILRIVGSCT------------- 897 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~------------- 897 (1119)
+|+..+.||+|+||.||+|.+..+++.||+|++... ...+.+|+.+++.++||||+++++++.
T Consensus 12 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~ 91 (320)
T 2i6l_A 12 RYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSL 91 (320)
T ss_dssp TEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----C
T ss_pred ceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccc
Confidence 566778999999999999999999999999988533 245778999999999999999998873
Q ss_pred -cCCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC-CCCceEEE
Q 001226 898 -KDEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD-SELEPKIG 975 (1119)
Q Consensus 898 -~~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~-~~~~vkl~ 975 (1119)
+....++||||++ |+|.+++... .+++..+..++.|+++|++|||+. +|+||||||+||+++ +++.+||+
T Consensus 92 ~~~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~ 163 (320)
T 2i6l_A 92 TELNSVYIVQEYME-TDLANVLEQG----PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKIG 163 (320)
T ss_dssp CSCSEEEEEEECCS-EEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEEC
T ss_pred cccCceeEEeeccC-CCHHHHhhcC----CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEEc
Confidence 3467799999997 6999998753 488999999999999999999999 999999999999997 56799999
Q ss_pred eccccccccCCCC-CCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhh-
Q 001226 976 DFGMSKLISDSHS-SSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWK- 1052 (1119)
Q Consensus 976 DfGla~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~- 1052 (1119)
|||+++....... ........+|..|+|||.+.+ ..++.++||||+||++|||++|+.||........ ........
T Consensus 164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-~~~~~~~~~ 242 (320)
T 2i6l_A 164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQ-MQLILESIP 242 (320)
T ss_dssp CCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHHSC
T ss_pred cCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHhcC
Confidence 9999987643211 122334567999999998765 6789999999999999999999999975321100 00000000
Q ss_pred hcc-------cccccccccccccCCCc----hHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1053 LQE-------NHECICFLDREISFWDS----DDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1053 ~~~-------~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
... .......+......... .....+.++.+++.+||+.||++|||++|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (320)
T 2i6l_A 243 VVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH 306 (320)
T ss_dssp CCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred CCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence 000 00000000000000000 001234578999999999999999999999985
No 272
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-34 Score=325.40 Aligned_cols=252 Identities=25% Similarity=0.412 Sum_probs=184.5
Q ss_pred cccceeeccCccccC--CCCccccccccccEEEecc-CccccCCCccccCCCCcceeeccCcccCCCCCccccccccceE
Q 001226 481 TNLFVLVLGNNRFNG--SFPIEIGKCSSLRRVILSN-NLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTM 557 (1119)
Q Consensus 481 ~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 557 (1119)
.+++.|+|++|++++ .+|..++++++|++|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356777777777777 6777777788888888874 7777777777777888888888888887777777888888888
Q ss_pred EeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCC-CCcEEeccCccccccCChhhhhcccCCeeEccCcc
Q 001226 558 LDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCT-KMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENN 636 (1119)
Q Consensus 558 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 636 (1119)
|+|++|++++.+|..|.++++|++|+|++|++++.+|..++.++ +|++|+|++|++++.+|..+..++ |+.|+|++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888878888888888888888888888878888888887 888888888888878888888776 8888888888
Q ss_pred CccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecccCCc
Q 001226 637 LSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPT 716 (1119)
Q Consensus 637 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~ 716 (1119)
+++.+|..|..+++|+.|+|++|.+++.+|. +..++.+ +.|++++|+++|.+|..++.+++|+.|+|++|+|+|.+|.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L-~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNL-NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTC-CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCC-CEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 8888888888888888877777777655544 3333332 2355566666555666666666666666666666666655
Q ss_pred cccccccceEEeccccc-ccc
Q 001226 717 EVNNMVSLYFVNISFNH-FSG 736 (1119)
Q Consensus 717 ~~~~~~~l~~l~ls~N~-~~g 736 (1119)
. ..+++|+.+++++|+ ++|
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEES
T ss_pred C-ccccccChHHhcCCCCccC
Confidence 4 555566666666665 444
No 273
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=1.1e-34 Score=349.29 Aligned_cols=260 Identities=23% Similarity=0.292 Sum_probs=197.8
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc-----cccHHHHHHHHhhcCCCCEEEEeeeeec------CCc
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-----ETNFDVEIRTLSLVRHRNILRIVGSCTK------DEH 901 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~ 901 (1119)
+.+|+..+.||+|+||.||+|.+..+++.||||+++.. ...+.+|+.+++.++||||+++++++.. ++.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 35788999999999999999999999999999998643 3457789999999999999999998765 667
Q ss_pred eEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCc---eEEEecc
Q 001226 902 GFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELE---PKIGDFG 978 (1119)
Q Consensus 902 ~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~---vkl~DfG 978 (1119)
.++||||+++|+|.+++........+++..++.++.|++.|++|||+. +|+||||||+||+++.++. +||+|||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEcccc
Confidence 799999999999999998766545688899999999999999999999 9999999999999997765 8999999
Q ss_pred ccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhc---c
Q 001226 979 MSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQ---E 1055 (1119)
Q Consensus 979 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~---~ 1055 (1119)
.+....... ......||+.|+|||.+.+..++.++||||+||++|||++|+.||...... ..|...... .
T Consensus 170 ~a~~~~~~~---~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~----~~~~~~i~~~~~~ 242 (676)
T 3qa8_A 170 YAKELDQGE---LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQP----VQWHGKVREKSNE 242 (676)
T ss_dssp CCCBTTSCC---CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHH----HHSSTTCC-----
T ss_pred ccccccccc---ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccch----hhhhhhhhcccch
Confidence 998765432 233457899999999999999999999999999999999999999653110 000000000 0
Q ss_pred cccccccc------cccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHH
Q 001226 1056 NHECICFL------DREISFWDSDDQLKALRLLELALECTRQVADMRPSMREV 1102 (1119)
Q Consensus 1056 ~~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~el 1102 (1119)
........ ..............+..+.+++.+||+.||++|||++|+
T Consensus 243 ~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el 295 (676)
T 3qa8_A 243 HIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN 295 (676)
T ss_dssp -CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred hhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence 00000000 011111111123356678999999999999999999873
No 274
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.5e-34 Score=331.99 Aligned_cols=261 Identities=21% Similarity=0.283 Sum_probs=194.9
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-----ccHHHHHHHHhhcCCCCEEEEeeeeecC-----CceEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-----TNFDVEIRTLSLVRHRNILRIVGSCTKD-----EHGFI 904 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~~l 904 (1119)
+|+..+.||+|+||.||+|.+..+++.||||+++... ..+.+|+.+++.++||||+++++++..+ ...++
T Consensus 12 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~l 91 (353)
T 2b9h_A 12 DFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYI 91 (353)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEE
T ss_pred ceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEE
Confidence 5677799999999999999999999999999986432 3466899999999999999999987654 67899
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
||||++ ++|.+++... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 92 v~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (353)
T 2b9h_A 92 IQELMQ-TDLHRVISTQ----MLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARIID 163 (353)
T ss_dssp EECCCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEeccC-ccHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence 999996 6899998763 489999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCCC--------cccccccCCCcccccccC-CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhh-c
Q 001226 985 DSHSSS--------TRSAIVGSLGYIAPENAY-STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKL-Q 1054 (1119)
Q Consensus 985 ~~~~~~--------~~~~~~gt~~y~aPE~~~-~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~-~ 1054 (1119)
...... ......||+.|+|||.+. +..++.++||||+||++|||++|+.||........ ......... .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~ 242 (353)
T 2b9h_A 164 ESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQ-LLLIFGIIGTP 242 (353)
T ss_dssp ----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCCC
T ss_pred cccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHH-HHHHHHHhCCC
Confidence 322111 122347899999999765 47789999999999999999999999975321000 000000000 0
Q ss_pred c---------cccccccccccccCCCc-----hHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1055 E---------NHECICFLDREISFWDS-----DDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1055 ~---------~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
. ......... ....... .....+.++.+++.+||+.||++|||++|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (353)
T 2b9h_A 243 HSDNDLRCIESPRAREYIK-SLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH 306 (353)
T ss_dssp CSTTTTTTCCCHHHHHHHH-TSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred chhccccccccchhhHHhh-cccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 0 000000000 0000000 001234567899999999999999999999985
No 275
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=9.2e-35 Score=328.70 Aligned_cols=254 Identities=28% Similarity=0.455 Sum_probs=194.5
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
.+|+..+.||+|+||.||+|.+.. .||+|+++.. ...+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 33 ~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 33 EQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp SCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 356778999999999999998864 4899988532 2457789999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|+++++|.+++...+. .+++..+..++.|+++|++|||+. +|+||||||+||+++ ++.+||+|||+++......
T Consensus 110 ~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~ 183 (319)
T 2y4i_B 110 LCKGRTLYSVVRDAKI--VLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQ 183 (319)
T ss_dssp CCCSEEHHHHTTSSCC--CCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC------
T ss_pred cccCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccccccc
Confidence 9999999999987542 488999999999999999999999 999999999999998 6799999999987653221
Q ss_pred ---CCCcccccccCCCcccccccCC---------CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcc
Q 001226 988 ---SSSTRSAIVGSLGYIAPENAYS---------TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 988 ---~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
.........||+.|+|||.+.+ ..++.++||||+|+++|||++|+.||...... . .. .....
T Consensus 184 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~-~~---~~~~~ 257 (319)
T 2y4i_B 184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE--A-II---WQMGT 257 (319)
T ss_dssp ----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH--H-HH---HHHHT
T ss_pred ccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--H-HH---HHhcc
Confidence 1122334568999999998764 45788999999999999999999998643111 0 00 00000
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccC
Q 001226 1056 NHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKN 1113 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~ 1113 (1119)
. ..+.... ...+..+.+++.+||+.||++|||++++++.|+++.++.
T Consensus 258 ~------~~~~~~~-----~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 258 G------MKPNLSQ-----IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp T------CCCCCCC-----SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred C------CCCCCCc-----CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 0 0000000 011235789999999999999999999999999998764
No 276
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=3.5e-35 Score=338.38 Aligned_cols=260 Identities=23% Similarity=0.263 Sum_probs=187.5
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc---------------ccHHHHHHHHhhcCCCCEEEEeeeeec-
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE---------------TNFDVEIRTLSLVRHRNILRIVGSCTK- 898 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---------------~~~~~E~~~l~~l~h~niv~l~~~~~~- 898 (1119)
+|+..+.||+|+||.||+|.+.. ++.||||++.... ..+.+|+++++.++||||+++++++..
T Consensus 23 ~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 101 (362)
T 3pg1_A 23 PYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHF 101 (362)
T ss_dssp SCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEEC
T ss_pred ceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEec
Confidence 46667899999999999999876 8999999884311 457899999999999999999999843
Q ss_pred ----CCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEE
Q 001226 899 ----DEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKI 974 (1119)
Q Consensus 899 ----~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl 974 (1119)
....|+||||++ |+|.+++.... ..+++..+..++.|++.|+.|||+. +|+||||||+||+++.++.+||
T Consensus 102 ~~~~~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl 175 (362)
T 3pg1_A 102 EEPAMHKLYLVTELMR-TDLAQVIHDQR--IVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLADNNDITI 175 (362)
T ss_dssp CTTTCCEEEEEEECCS-EEHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEE
T ss_pred cCCCcceEEEEEccCC-CCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEcCCCCEEE
Confidence 335799999997 68888887553 2589999999999999999999999 9999999999999999999999
Q ss_pred EeccccccccCCCCCCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhh---
Q 001226 975 GDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTR--- 1050 (1119)
Q Consensus 975 ~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~--- 1050 (1119)
+|||+++..... .......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+. ......
T Consensus 176 ~Dfg~~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~i~~~~~ 251 (362)
T 3pg1_A 176 CDFNLAREDTAD---ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQ-LNKIVEVVG 251 (362)
T ss_dssp CCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHC
T ss_pred EecCcccccccc---cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHcC
Confidence 999999754332 22334578999999998876 6789999999999999999999999975321100 000000
Q ss_pred ------hhhcccccccccccccccC-----CCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1051 ------WKLQENHECICFLDREISF-----WDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1051 ------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
............+...... +.......+..+.+++.+||+.||++|||++|+++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 317 (362)
T 3pg1_A 252 TPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH 317 (362)
T ss_dssp CCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence 0000000000000000000 000011224568899999999999999999999986
No 277
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=7.9e-35 Score=334.05 Aligned_cols=256 Identities=20% Similarity=0.273 Sum_probs=191.8
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcCCCCEEEEeeeeecCCc------e
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEH------G 902 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------~ 902 (1119)
+|...+.||+|+||.||+|.+..+++.||||++... ...+.+|+.+++.++||||+++++++...+. .
T Consensus 25 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 104 (353)
T 3coi_A 25 TYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDF 104 (353)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCC
T ss_pred eEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeE
Confidence 466678999999999999999999999999998542 2346789999999999999999999987654 4
Q ss_pred EEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccc
Q 001226 903 FIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKL 982 (1119)
Q Consensus 903 ~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~ 982 (1119)
|+||||++ ++|.+++.. .+++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 105 ~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~ 175 (353)
T 3coi_A 105 YLVMPFMQ-TDLQKIMGL-----KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARH 175 (353)
T ss_dssp EEEEECCS-EEGGGTTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred EEEecccc-CCHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccccC
Confidence 99999997 688877643 388999999999999999999999 999999999999999999999999999986
Q ss_pred ccCCCCCCcccccccCCCcccccccCC-CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccc-
Q 001226 983 ISDSHSSSTRSAIVGSLGYIAPENAYS-TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECI- 1060 (1119)
Q Consensus 983 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~- 1060 (1119)
.... .....+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+. ................
T Consensus 176 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-~~~i~~~~~~~~~~~~~ 249 (353)
T 3coi_A 176 ADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ-LTQILKVTGVPGTEFVQ 249 (353)
T ss_dssp -------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHH-HHHHHHHHCBCCHHHHT
T ss_pred CCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHhCCCCHHHHH
Confidence 5431 234578999999998876 6789999999999999999999999975321100 0000000000000000
Q ss_pred --------cc---cccc-ccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1061 --------CF---LDRE-ISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1061 --------~~---~~~~-~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.. +... ...+.......+..+.+++.+|++.||++|||++|++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 306 (353)
T 3coi_A 250 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 306 (353)
T ss_dssp TCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 00 0000 000001112235578899999999999999999999976
No 278
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-35 Score=329.28 Aligned_cols=237 Identities=24% Similarity=0.375 Sum_probs=191.6
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc----------cccHHHHHHHHhhc----CCCCEEEEeeeeecC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----------ETNFDVEIRTLSLV----RHRNILRIVGSCTKD 899 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----------~~~~~~E~~~l~~l----~h~niv~l~~~~~~~ 899 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||+++.. ...+.+|+.+++++ +||||+++++++.++
T Consensus 31 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~ 110 (312)
T 2iwi_A 31 AEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQ 110 (312)
T ss_dssp --CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC---
T ss_pred hceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecC
Confidence 3688889999999999999999999999999998532 23456799999998 899999999999999
Q ss_pred CceEEEEec-cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC-CCCceEEEec
Q 001226 900 EHGFIVTEY-MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD-SELEPKIGDF 977 (1119)
Q Consensus 900 ~~~~lV~e~-~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~-~~~~vkl~Df 977 (1119)
+..++|||+ +++++|.+++.... .+++..++.++.|+++|++|||+. +|+||||||+||+++ .++.+||+||
T Consensus 111 ~~~~~v~e~~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~df 184 (312)
T 2iwi_A 111 EGFMLVLERPLPAQDLFDYITEKG---PLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKLIDF 184 (312)
T ss_dssp --CEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEEECCC
T ss_pred CeEEEEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEEEEEc
Confidence 999999999 78999999998754 489999999999999999999999 999999999999999 8899999999
Q ss_pred cccccccCCCCCCcccccccCCCcccccccCCCCC-CCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccc
Q 001226 978 GMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRL-TEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQEN 1056 (1119)
Q Consensus 978 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 1056 (1119)
|+++...... .....++..|+|||.+.+..+ +.++||||+|+++|||++|+.||.... . ..
T Consensus 185 g~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~-------~~--- 246 (312)
T 2iwi_A 185 GSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ----E-------IL--- 246 (312)
T ss_dssp SSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----H-------HH---
T ss_pred chhhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH----H-------Hh---
Confidence 9998765422 234568999999998876665 458999999999999999999986320 0 00
Q ss_pred ccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1057 HECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...... ....+..+.+++.+||+.||++|||++|++++
T Consensus 247 -------~~~~~~----~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~ 284 (312)
T 2iwi_A 247 -------EAELHF----PAHVSPDCCALIRRCLAPKPSSRPSLEEILLD 284 (312)
T ss_dssp -------HTCCCC----CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred -------hhccCC----cccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000000 01123467899999999999999999999985
No 279
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=6e-35 Score=329.19 Aligned_cols=246 Identities=22% Similarity=0.342 Sum_probs=188.4
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEecccc------cccHHHHHHHHhhcC--CCCEEEEeeeeecCCceEEEE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------ETNFDVEIRTLSLVR--HRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lV~ 906 (1119)
+|+..+.||+|+||.||+|.+.. ++.||||++... ...+.+|+.+++.++ ||||+++++++.+++..++||
T Consensus 29 ~y~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 107 (313)
T 3cek_A 29 IYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 107 (313)
T ss_dssp EEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEE
T ss_pred eEEEEEEecCCCCEEEEEEEcCC-CcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEE
Confidence 46677899999999999999865 889999998532 245788999999997 599999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
| +.+++|.+++.... .+++..+..++.|+++|+.|||+. +|+||||||+||+++ ++.+||+|||+++.....
T Consensus 108 e-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~~ 179 (313)
T 3cek_A 108 E-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 179 (313)
T ss_dssp C-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCC----
T ss_pred e-cCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEE-CCeEEEeeccccccccCc
Confidence 9 56889999998754 489999999999999999999999 999999999999996 489999999999876543
Q ss_pred CCCCcccccccCCCcccccccCC-----------CCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYS-----------TRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQE 1055 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 1055 (1119)
..........||+.|+|||.+.+ ..++.++||||+|+++|||++|+.||........ ...
T Consensus 180 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~---~~~------ 250 (313)
T 3cek_A 180 TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS---KLH------ 250 (313)
T ss_dssp ----------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHH---HHH------
T ss_pred cccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHH---HHH------
Confidence 33333345578999999998765 4688899999999999999999999964321100 000
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1056 NHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
...+...... .+...+..+.+++.+||+.||++||+++|++++
T Consensus 251 -----~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 251 -----AIIDPNHEIE--FPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp -----HHHCTTSCCC--CCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred -----HHHhcccccC--CcccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 0011110000 000113467899999999999999999999986
No 280
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=1.1e-34 Score=335.95 Aligned_cols=263 Identities=20% Similarity=0.252 Sum_probs=197.7
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCceEEEEEecccc---cccHHHHHHHHhhcC-----------CCCEEEEeeeeecC
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS---ETNFDVEIRTLSLVR-----------HRNILRIVGSCTKD 899 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~---~~~~~~E~~~l~~l~-----------h~niv~l~~~~~~~ 899 (1119)
.+|+..+.||+|+||.||+|.+..+++.||||++... ...+.+|+.++++++ ||||+++++++...
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 98 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK 98 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhcc
Confidence 3677789999999999999999999999999999754 345778999998876 89999999998765
Q ss_pred C----ceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC------CC
Q 001226 900 E----HGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD------SE 969 (1119)
Q Consensus 900 ~----~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~------~~ 969 (1119)
+ ..++||||+ +++|.+++..... ..+++..+..++.||+.|++|||+.+ +|+||||||+||+++ ..
T Consensus 99 ~~~~~~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~~~ 174 (373)
T 1q8y_A 99 GPNGVHVVMVFEVL-GENLLALIKKYEH-RGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENL 174 (373)
T ss_dssp ETTEEEEEEEECCC-CEEHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTTTE
T ss_pred CCCCceEEEEEecC-CCCHHHHHHHhhc-cCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCcCc
Confidence 4 679999999 8999999987543 24899999999999999999999853 899999999999994 44
Q ss_pred CceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCce----
Q 001226 970 LEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDI---- 1045 (1119)
Q Consensus 970 ~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~---- 1045 (1119)
+.+||+|||+++..... .....+|+.|+|||.+.+..++.++||||+||++|||++|+.||..........
T Consensus 175 ~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~ 249 (373)
T 1q8y_A 175 IQIKIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDH 249 (373)
T ss_dssp EEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHH
T ss_pred ceEEEcccccccccCCC-----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHH
Confidence 58999999999866432 233478999999999999999999999999999999999999997543221100
Q ss_pred -eehhhhhh-----------------ccccccccccc-------ccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHH
Q 001226 1046 -VTWTRWKL-----------------QENHECICFLD-------REISFWDSDDQLKALRLLELALECTRQVADMRPSMR 1100 (1119)
Q Consensus 1046 -~~~~~~~~-----------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ 1100 (1119)
........ ........... .........+...+..+.+++.+||+.||++|||++
T Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ 329 (373)
T 1q8y_A 250 IAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAG 329 (373)
T ss_dssp HHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHH
T ss_pred HHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHH
Confidence 00000000 00000000000 000000112345677889999999999999999999
Q ss_pred HHHHH
Q 001226 1101 EVVGF 1105 (1119)
Q Consensus 1101 ell~~ 1105 (1119)
|++++
T Consensus 330 ell~h 334 (373)
T 1q8y_A 330 GLVNH 334 (373)
T ss_dssp HHHTC
T ss_pred HHhhC
Confidence 99985
No 281
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=1.1e-34 Score=329.29 Aligned_cols=252 Identities=23% Similarity=0.321 Sum_probs=174.7
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-----ccHHHHHH-HHhhcCCCCEEEEeeeeecCCceEEEEec
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-----TNFDVEIR-TLSLVRHRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+|...+.||+|+||.||+|.+..+++.||||+++... .++..|+. +++.++||||+++++++.+++..++||||
T Consensus 23 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~ 102 (327)
T 3aln_A 23 DLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMEL 102 (327)
T ss_dssp SEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred HhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEee
Confidence 5667789999999999999999999999999985432 23444555 66778999999999999999999999999
Q ss_pred cCCCCHHHhhccC--CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 909 MPGGTLFNVLHQN--EPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 909 ~~~gsL~~~l~~~--~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
+++ +|.+++... .....+++..+..++.|++.|+.|||+.. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 103 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 179 (327)
T 3aln_A 103 MST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDS 179 (327)
T ss_dssp CSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCSSSCC----
T ss_pred cCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCCCceecccc
Confidence 975 787777631 11235899999999999999999999853 8999999999999999999999999999876432
Q ss_pred CCCCcccccccCCCccccccc----CCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENA----YSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
. ......||+.|+|||.+ .+..++.++||||+||++|||++|+.||................ .
T Consensus 180 ~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~------~---- 246 (327)
T 3aln_A 180 I---AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKG------D---- 246 (327)
T ss_dssp -----------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCS------C----
T ss_pred c---ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcC------C----
Confidence 2 22334689999999988 45678999999999999999999999997532111111100000 0
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.+.+.. ......+..+.+++.+||+.||++|||++|++++
T Consensus 247 -~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 286 (327)
T 3aln_A 247 -PPQLSN--SEEREFSPSFINFVNLCLTKDESKRPKYKELLKH 286 (327)
T ss_dssp -CCCCCC--CSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred -CCCCCC--cccccCCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence 000000 0001123467899999999999999999999874
No 282
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=1.7e-34 Score=331.85 Aligned_cols=261 Identities=21% Similarity=0.282 Sum_probs=197.6
Q ss_pred HHhhCCceeeecCCccEEEEEeCCCc-eEEEEEecccc---cccHHHHHHHHhhcCCCC------EEEEeeeeecCCceE
Q 001226 834 IRATEGRIIGKGKHGTVYRTLSNNSR-KHWAVKKLNRS---ETNFDVEIRTLSLVRHRN------ILRIVGSCTKDEHGF 903 (1119)
Q Consensus 834 ~~~~~~~~lG~G~fg~Vy~~~~~~~~-~~vavK~~~~~---~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~~~ 903 (1119)
.+|+..+.||+|+||.||+|.+..++ +.||+|+++.. ...+.+|+.+++.++|++ ++.+.+++...+..+
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMC 98 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEE
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEE
Confidence 36777899999999999999998766 78999999643 345778999999987655 999999999999999
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEe-----------------
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILL----------------- 966 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill----------------- 966 (1119)
+||||+ ++++.+++..... ..+++..+..++.||+.|++|||+. +|+||||||+||++
T Consensus 99 lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~ 173 (355)
T 2eu9_A 99 IAFELL-GKNTFEFLKENNF-QPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSCEE 173 (355)
T ss_dssp EEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CCCE
T ss_pred EEEecc-CCChHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccccccccccccc
Confidence 999999 6777777766542 3589999999999999999999999 99999999999999
Q ss_pred --CCCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCc
Q 001226 967 --DSELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTD 1044 (1119)
Q Consensus 967 --~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 1044 (1119)
+.++.+||+|||+++.... ......||+.|+|||.+.+..++.++||||+||++|||++|+.||......+ .
T Consensus 174 ~~~~~~~~kl~Dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~ 247 (355)
T 2eu9_A 174 KSVKNTSIRVADFGSATFDHE-----HHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENRE-H 247 (355)
T ss_dssp EEESCCCEEECCCTTCEETTS-----CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-H
T ss_pred cccCCCcEEEeecCccccccc-----cccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH-H
Confidence 5678999999999986543 2234578999999999999999999999999999999999999997532111 0
Q ss_pred eeehhhhhhcccc-------cccccccc-------------------cccCCCchHHHHHHHHHHHHHHccccCCCCCCC
Q 001226 1045 IVTWTRWKLQENH-------ECICFLDR-------------------EISFWDSDDQLKALRLLELALECTRQVADMRPS 1098 (1119)
Q Consensus 1045 ~~~~~~~~~~~~~-------~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs 1098 (1119)
............. ....+... ............+..+.+++.+||+.||++|||
T Consensus 248 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt 327 (355)
T 2eu9_A 248 LVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRIT 327 (355)
T ss_dssp HHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC
T ss_pred HHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcC
Confidence 0000000000000 00000000 000000111233557889999999999999999
Q ss_pred HHHHHHH
Q 001226 1099 MREVVGF 1105 (1119)
Q Consensus 1099 ~~ell~~ 1105 (1119)
++|++++
T Consensus 328 ~~e~l~h 334 (355)
T 2eu9_A 328 LAEALLH 334 (355)
T ss_dssp HHHHTTS
T ss_pred HHHHhcC
Confidence 9999865
No 283
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=336.47 Aligned_cols=248 Identities=23% Similarity=0.312 Sum_probs=183.8
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc-ccccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEEEeccCCC
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR-SETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIVTEYMPGG 912 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~-~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e~~~~g 912 (1119)
+|...++||+|+||+||.. ...+++.||||++.. ....+.+|+.+++.+ +|||||++++++.++...|+||||++ |
T Consensus 25 ~y~~~~~LG~G~~G~V~~~-~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g 102 (432)
T 3p23_A 25 SFCPKDVLGHGAEGTIVYR-GMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-A 102 (432)
T ss_dssp EEEEEEEEEECGGGCEEEE-EESSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-E
T ss_pred EEecCCeeecCcCEEEEEE-EEeCCeEEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-C
Confidence 4556689999999997643 334588999999854 345678999999999 79999999999999999999999996 6
Q ss_pred CHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC-----CCceEEEeccccccccCCC
Q 001226 913 TLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS-----ELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 913 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~-----~~~vkl~DfGla~~~~~~~ 987 (1119)
+|.+++..... ..++..+..++.||++|++|||+. +|+||||||+||+++. ...+||+|||+++......
T Consensus 103 ~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~ 177 (432)
T 3p23_A 103 TLQEYVEQKDF--AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGR 177 (432)
T ss_dssp EHHHHHHSSSC--CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC----
T ss_pred CHHHHHHhcCC--CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCC
Confidence 99999986643 244446678999999999999999 9999999999999953 2358899999998765432
Q ss_pred C-CCcccccccCCCcccccccC---CCCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceeehhhhhhccccccccc
Q 001226 988 S-SSTRSAIVGSLGYIAPENAY---STRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVTWTRWKLQENHECICF 1062 (1119)
Q Consensus 988 ~-~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1119)
. ........||+.|+|||++. ...++.++||||+||++|||++ |..||........ .. .....
T Consensus 178 ~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~------~~-~~~~~----- 245 (432)
T 3p23_A 178 HSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQA------NI-LLGAC----- 245 (432)
T ss_dssp --------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHH------HH-HTTCC-----
T ss_pred cceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHH------HH-HhccC-----
Confidence 1 12334567999999999887 4567889999999999999999 8999853211100 00 00000
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1063 LDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
... ...........+.+++.+||+.||++|||++|+++|
T Consensus 246 ---~~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~h 284 (432)
T 3p23_A 246 ---SLD-CLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKH 284 (432)
T ss_dssp ---CCT-TSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred ---Ccc-ccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHhC
Confidence 000 001112334567899999999999999999999954
No 284
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.7e-33 Score=316.41 Aligned_cols=307 Identities=20% Similarity=0.309 Sum_probs=206.8
Q ss_pred ccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccc
Q 001226 308 ISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLE 387 (1119)
Q Consensus 308 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~ 387 (1119)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+++. +.+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 4567778888888888773 33 37778888888888888774433 77778888888888877642 3577777788
Q ss_pred eeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccc
Q 001226 388 VLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGN 467 (1119)
Q Consensus 388 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N 467 (1119)
+|++++|.+++..+ +..+++|++|++++|..... +..+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCC
Confidence 88888777775433 67777777777777755433 3346777777777777777664322 233444555544444
Q ss_pred eeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCc
Q 001226 468 SFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPP 547 (1119)
Q Consensus 468 ~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 547 (1119)
. +.+. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+
T Consensus 188 ~------------------------l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 188 Q------------------------IEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp C------------------------CCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred c------------------------cccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 4 4422 21 4555666666666666654333 5566666666666666664333
Q ss_pred cccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccC
Q 001226 548 VFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKM 627 (1119)
Q Consensus 548 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 627 (1119)
+..+++|++|++++|++++ + ..+..+++|+.|++++|++.+ + ..+..+++|+.|++++|++++..|..+..+++|
T Consensus 239 -~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred -hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 6667777777777777764 2 457777788888888888774 3 357778888888888888877777778888888
Q ss_pred CeeEccCccCccCCCccccccccccEeecCCcccC
Q 001226 628 QSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFD 662 (1119)
Q Consensus 628 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 662 (1119)
++|+|++|++++..| +..+++|++|++++|.++
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888888886655 777888888887777664
No 285
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.3e-33 Score=317.03 Aligned_cols=309 Identities=26% Similarity=0.323 Sum_probs=223.2
Q ss_pred hhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCC
Q 001226 282 ETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGS 361 (1119)
Q Consensus 282 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 361 (1119)
..+..+++|++|++++|.+.... .+..+++|++|++++|++++..+ +..+++|++|++++|.++.. +.+..+++
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~ 111 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN 111 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred ccchhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence 34568899999999999998653 48899999999999999995443 99999999999999999853 46999999
Q ss_pred CcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccC
Q 001226 362 LVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAH 441 (1119)
Q Consensus 362 L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 441 (1119)
|++|++++|.+++. +. +..+++|+.|++++|.....++ .+..+++|++|++++|.+++..+ +..+++|+.|++++
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 99999999999854 33 8899999999999997664544 48999999999999999985433 88999999999999
Q ss_pred ccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCC
Q 001226 442 NHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSL 521 (1119)
Q Consensus 442 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 521 (1119)
|++++..+ +..++.|+.|++++|.+++..+ +..+++|+.|++++|+++ +..
T Consensus 187 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~------------------------~~~ 237 (347)
T 4fmz_A 187 NQIEDISP---LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT------------------------DLS 237 (347)
T ss_dssp SCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC------------------------CCG
T ss_pred Cccccccc---ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC------------------------CCc
Confidence 99985433 4456677777777776664433 444455555555555554 322
Q ss_pred CccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCC
Q 001226 522 PATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCT 601 (1119)
Q Consensus 522 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 601 (1119)
+ +..+++|+.|++++|++++. +.+..+++|++|++++|++++. ..+..+++|+.|++++|++.+..|..+..++
T Consensus 238 ~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp G--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred c--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 2 44444555555555554432 2355566666666666666642 3466666777777777777666666666677
Q ss_pred CCcEEeccCccccccCChhhhhcccCCeeEccCccCc
Q 001226 602 KMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLS 638 (1119)
Q Consensus 602 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 638 (1119)
+|++|+|++|++++..| +..+++|+.|++++|.|+
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777777765444 666677777777777664
No 286
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=4.4e-34 Score=336.41 Aligned_cols=250 Identities=26% Similarity=0.322 Sum_probs=183.3
Q ss_pred hCCceeeecCCccEEEEEeCCCceEEEEEecccc-cccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEEEeccCCCCH
Q 001226 837 TEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIVTEYMPGGTL 914 (1119)
Q Consensus 837 ~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e~~~~gsL 914 (1119)
...++||+|+||+||.+. ..+|+.||||++... .+.+.+|+.+++++ +||||+++++++.+++..|+||||++ |+|
T Consensus 18 ~~~~~LG~G~~g~V~~~~-~~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL 95 (434)
T 2rio_A 18 VSEKILGYGSSGTVVFQG-SFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNL 95 (434)
T ss_dssp EEEEEEEECSTTCEEEEE-ESSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EEH
T ss_pred eccCeEeeCCCeEEEEEE-EECCeEEEEEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CCH
Confidence 345789999999998754 445899999998654 34567899999876 89999999999999999999999995 699
Q ss_pred HHhhccCCCCC----CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCC-------------CceEEEec
Q 001226 915 FNVLHQNEPRL----VLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSE-------------LEPKIGDF 977 (1119)
Q Consensus 915 ~~~l~~~~~~~----~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~-------------~~vkl~Df 977 (1119)
.+++....... ..++..++.++.||+.|++|||+. +|+||||||+||+++.+ +.+||+||
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DF 172 (434)
T 2rio_A 96 QDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDF 172 (434)
T ss_dssp HHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCC
T ss_pred HHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEEEccc
Confidence 99998654211 112334578999999999999999 99999999999999754 48999999
Q ss_pred cccccccCCCCC--CcccccccCCCcccccccCC-------CCCCCcchHHHHHHHHHHHHh-CCCCCCCCCCCCCceee
Q 001226 978 GMSKLISDSHSS--STRSAIVGSLGYIAPENAYS-------TRLTEKSDVYSYGVILFELLF-RKMPVDPSFGEDTDIVT 1047 (1119)
Q Consensus 978 Gla~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 1047 (1119)
|+++........ .......||+.|+|||++.+ ..++.++||||+||++|||++ |+.||........ .
T Consensus 173 G~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~---~ 249 (434)
T 2rio_A 173 GLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES---N 249 (434)
T ss_dssp TTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHH---H
T ss_pred ccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHH---H
Confidence 999877543221 12234579999999998865 678999999999999999998 9999864321110 0
Q ss_pred hhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1048 WTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
... ..... +... .......+.++.+++.+||+.||++|||++|+++|
T Consensus 250 i~~----~~~~~-----~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 296 (434)
T 2rio_A 250 IIR----GIFSL-----DEMK--CLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRH 296 (434)
T ss_dssp HHH----TCCCC-----CCCT--TCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred Hhc----CCCCc-----cccc--ccccccchHHHHHHHHHHhhCChhhCCCHHHHHhC
Confidence 000 00000 0000 01123456688999999999999999999999864
No 287
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=7.7e-34 Score=320.95 Aligned_cols=250 Identities=22% Similarity=0.281 Sum_probs=177.5
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEecccccc------cHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEE
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSET------NFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~------~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
+.+|+..+.||+|+||.||+|.+..+++.||||++..... .+.++..+++.++||||+++++++.+++..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 4567778999999999999999999999999999854321 2334445677889999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||+ ++.+..+..... ..+++..+..++.|+++|+.|||+.+ +|+||||||+||+++.++.+||+|||++......
T Consensus 104 e~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRMQ--GPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD 178 (318)
T ss_dssp CCC-SEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred ecc-CCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhhC--CEEeCCCCHHHEEECCCCCEEEEECCCchhccCC
Confidence 999 555655554432 24899999999999999999999832 8999999999999999999999999999766442
Q ss_pred CCCCcccccccCCCcccccccC-----CCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccc
Q 001226 987 HSSSTRSAIVGSLGYIAPENAY-----STRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECIC 1061 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1119)
. ......+|+.|+|||.+. ...++.++||||+||++|||++|+.||...... ...+.......
T Consensus 179 ~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~------ 246 (318)
T 2dyl_A 179 K---AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTD---FEVLTKVLQEE------ 246 (318)
T ss_dssp -----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSH---HHHHHHHHHSC------
T ss_pred c---cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCcc---HHHHHHHhccC------
Confidence 2 223456899999999884 556889999999999999999999999743111 11111100000
Q ss_pred cccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1062 FLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
.+.... ....+..+.+++.+||+.||++||+++|++++
T Consensus 247 --~~~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (318)
T 2dyl_A 247 --PPLLPG----HMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH 284 (318)
T ss_dssp --CCCCCS----SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred --CCCCCc----cCCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 000110 01123467899999999999999999999875
No 288
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=2.3e-33 Score=310.83 Aligned_cols=230 Identities=11% Similarity=0.090 Sum_probs=182.2
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc-------ccHHHHHHHHhhcCCCCEEEEeeeeecCCceEEEEe
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE-------TNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-------~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 907 (1119)
+|+..+.||+|+||.||+|++..+++.||||+++... ..+.+|+..++.++||||+++++++.+++..|+|||
T Consensus 32 ~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 111 (286)
T 3uqc_A 32 RYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAE 111 (286)
T ss_dssp TEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEE
Confidence 5777899999999999999999999999999996432 457889999999999999999999999999999999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCC
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSH 987 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~ 987 (1119)
|++|++|.++++.. ....++.+++.|++.|++|||+. ||+||||||+||+++.++.+||+++|
T Consensus 112 ~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~--------- 174 (286)
T 3uqc_A 112 WIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA--------- 174 (286)
T ss_dssp CCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC---------
T ss_pred ecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc---------
Confidence 99999999999542 34557889999999999999999 99999999999999999999998543
Q ss_pred CCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccc
Q 001226 988 SSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREI 1067 (1119)
Q Consensus 988 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1119)
|++ .++.++||||+||++|||++|+.||............... .....
T Consensus 175 -------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~------------~~~~~ 222 (286)
T 3uqc_A 175 -------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERD------------TAGQP 222 (286)
T ss_dssp -------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBC------------TTSCB
T ss_pred -------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHH------------hccCC
Confidence 333 3688999999999999999999999764322111000000 00000
Q ss_pred cCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHcccccCC
Q 001226 1068 SFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGFLIKLNDKNE 1114 (1119)
Q Consensus 1068 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~L~~~~~~~~ 1114 (1119)
..........+..+.+++.+||+.||++| |++|+++.|+++.....
T Consensus 223 ~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~ 268 (286)
T 3uqc_A 223 IEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVAD 268 (286)
T ss_dssp CCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC---
T ss_pred CChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCC
Confidence 00000001224568899999999999999 99999999999876654
No 289
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=6e-33 Score=310.48 Aligned_cols=231 Identities=22% Similarity=0.306 Sum_probs=180.2
Q ss_pred HhhCC-ceeeecCCccEEEEEeCCCceEEEEEecccccccHHHHHHHH-hhcCCCCEEEEeeeeec----CCceEEEEec
Q 001226 835 RATEG-RIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTL-SLVRHRNILRIVGSCTK----DEHGFIVTEY 908 (1119)
Q Consensus 835 ~~~~~-~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~~~~lV~e~ 908 (1119)
+|... +.||+|+||.||+|.+..+++.||+|+++. ...+.+|+.++ +..+||||+++++++.. +...++||||
T Consensus 18 ~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~ 96 (299)
T 3m2w_A 18 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMEC 96 (299)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECC
T ss_pred chhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEee
Confidence 34444 779999999999999999999999999865 34577888888 56689999999999876 6778999999
Q ss_pred cCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCC---CCceEEEeccccccccC
Q 001226 909 MPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDS---ELEPKIGDFGMSKLISD 985 (1119)
Q Consensus 909 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---~~~vkl~DfGla~~~~~ 985 (1119)
+++|+|.+++..... ..+++..+..++.|++.|++|||+. +|+||||||+||+++. ++.+||+|||++....
T Consensus 97 ~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~- 171 (299)
T 3m2w_A 97 LDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT- 171 (299)
T ss_dssp CCSCBHHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT-
T ss_pred cCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEeccccccccc-
Confidence 999999999987643 3589999999999999999999999 9999999999999998 7889999999986432
Q ss_pred CCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccc
Q 001226 986 SHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDR 1065 (1119)
Q Consensus 986 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1119)
+..++.++||||+||++|||++|+.||............. ......
T Consensus 172 -----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~-----------~~~~~~ 217 (299)
T 3m2w_A 172 -----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK-----------TRIRMG 217 (299)
T ss_dssp -----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSC-----------CSSCTT
T ss_pred -----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHH-----------HHHhhc
Confidence 2346789999999999999999999996542211100000 000000
Q ss_pred cccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1066 EISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1066 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
............+..+.+++.+||+.||++|||++|++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 218 QYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp CCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 0000000011234578899999999999999999999985
No 290
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=7.4e-32 Score=306.43 Aligned_cols=289 Identities=23% Similarity=0.281 Sum_probs=169.4
Q ss_pred CCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEee
Q 001226 337 SLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALY 416 (1119)
Q Consensus 337 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 416 (1119)
+++.+++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6778888888777 5555543 577777777777776666677777777777777777777667777777777777777
Q ss_pred cccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCC
Q 001226 417 NNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGS 496 (1119)
Q Consensus 417 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~ 496 (1119)
+|+++ .+|..+. ++|++|++++|+++ .++...+..+++|+.|++++|.++. .+.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~ 164 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLEN----------------------SGF 164 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBG----------------------GGS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCcccc----------------------CCC
Confidence 77776 4454443 56666666666665 2333333445555555555555532 012
Q ss_pred CCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCc
Q 001226 497 FPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNL 576 (1119)
Q Consensus 497 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 576 (1119)
.|..+..+ +|+.|++++|++++ +|..+. ++|+.|++++|++++..|..+..+++|++|+|++|++++..|..|..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 33333333 44444444444443 222222 445555555555555555555555566666666666655555556666
Q ss_pred ccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhh------cccCCeeEccCccCc--cCCCcccccc
Q 001226 577 ENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVIS------LEKMQSLSLQENNLS--GAIPDAFSSV 648 (1119)
Q Consensus 577 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~--~~~p~~~~~l 648 (1119)
++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..+.. ...|+.|++++|.+. +..|.+|..+
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 66666666666665 55555666666666666666665444444433 244666666666665 4556666666
Q ss_pred ccccEeecCCc
Q 001226 649 QSLFELQLGSN 659 (1119)
Q Consensus 649 ~~L~~L~L~~N 659 (1119)
++|+.|++++|
T Consensus 320 ~~L~~l~l~~n 330 (332)
T 2ft3_A 320 TDRLAIQFGNY 330 (332)
T ss_dssp CCSTTEEC---
T ss_pred chhhhhhcccc
Confidence 66666666655
No 291
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=2e-31 Score=302.83 Aligned_cols=290 Identities=21% Similarity=0.266 Sum_probs=216.2
Q ss_pred CCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeec
Q 001226 312 NQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYL 391 (1119)
Q Consensus 312 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 391 (1119)
.+++.+++++|.++ .+|..+. ++|+.|++++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 37999999999998 6776664 79999999999999888889999999999999999999888999999999999999
Q ss_pred cCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCccc-chhhhhccCCccceeccccceee
Q 001226 392 FNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGE-VALELGKHFPYLSRLDLTGNSFY 470 (1119)
Q Consensus 392 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~ 470 (1119)
++|+++. +|..+. ++|++|++++|++++..+..|.++++|+.|++++|.++.. .....+..+ +|+.|++++|.++
T Consensus 110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 9999995 454444 8999999999999977777799999999999999999731 222222223 5555555555554
Q ss_pred CccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCcccc
Q 001226 471 GPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFG 550 (1119)
Q Consensus 471 ~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 550 (1119)
+ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+.
T Consensus 186 ~-------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 186 G-------------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp S-------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred c-------------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 3 333322 4566666666666665556666666666666666666666666677
Q ss_pred ccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCccccc------CCCCcEEeccCcccc--ccCChhhh
Q 001226 551 FWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGK------CTKMIKLDLSDNYLA--GSIPSEVI 622 (1119)
Q Consensus 551 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~--~~~p~~~~ 622 (1119)
.+++|++|+|++|+++ .+|..+.++++|+.|++++|++++..+..|.. ..+|+.|++++|.+. +..|..+.
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 7777777777777776 66777777777777777777777554555543 356788888888876 56677778
Q ss_pred hcccCCeeEccCcc
Q 001226 623 SLEKMQSLSLQENN 636 (1119)
Q Consensus 623 ~l~~L~~L~L~~N~ 636 (1119)
.+++|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 88888888888774
No 292
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=1.6e-32 Score=310.42 Aligned_cols=281 Identities=18% Similarity=0.231 Sum_probs=177.8
Q ss_pred ccCCCcHHHHHHHHhcCCCCCC-CCCCCCCC-CCCCCCceeeeeeeecCCCceEEEecCCCcccccCccchhhhccCCcc
Q 001226 21 VSSPPSAISLVQFLDSLPKQSQ-SHLPWNQS-VSTSAPCKWSGVSCYNNSSSLKALNLSGFGLSGVLNNSISYICKNQHL 98 (1119)
Q Consensus 21 ~~~~~~~~~ll~~~~~~~~~~~-~~~~w~~~-~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~~~~l~~l 98 (1119)
.+..++++||++||+++..++. .+.+|..+ ....++|.|.|++|..... .+. -...+++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~------------------~l~-~~~~~~l 83 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD------------------LLE-DATQPGR 83 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHH------------------HHH-HHTSTTC
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHH------------------HHh-cccccce
Confidence 3467889999999998854432 34578411 1246789999999963110 000 1134677
Q ss_pred cEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCcccccccccceeeeccc
Q 001226 99 LSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESIGFHNN 178 (1119)
Q Consensus 99 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 178 (1119)
++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|++++|
T Consensus 84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 77888888777 67777777888888888888877 77777788888888888888777 66777777777777777777
Q ss_pred ccccccCccCCC---------cccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCC
Q 001226 179 FLNGELPNDICS---------LPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSN 249 (1119)
Q Consensus 179 ~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n 249 (1119)
++.+.+|..++. +++|++|++++|+++ .+|..+++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~lp~~l~~------------ 204 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------SLPASIAN------------ 204 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------CCCGGGGG------------
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------cchHhhcC------------
Confidence 666666665543 566666666665554 23333444
Q ss_pred ccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccC
Q 001226 250 NFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIP 329 (1119)
Q Consensus 250 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 329 (1119)
+++|++|+|++|++++ +|..+..+++|++|+|++|.+.+.+|..|..+++|++|+|++|.+.+.+|
T Consensus 205 -------------l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 205 -------------LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp -------------CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred -------------CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 4445555555555552 33345555555555555555555555555555555666665555555566
Q ss_pred cccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCc
Q 001226 330 RSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIG 373 (1119)
Q Consensus 330 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~ 373 (1119)
..+.++++|++|++++|++.+.+|..++++++|+.+++..+.+.
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 56666666666666666666566666666666666666655443
No 293
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.98 E-value=6.7e-33 Score=324.07 Aligned_cols=237 Identities=15% Similarity=0.152 Sum_probs=176.4
Q ss_pred hhCCceeeecCCccEEEEEeCCCceEEEEEecccc-------cccHHHHHHHHhhcCC-CCE---------------E--
Q 001226 836 ATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-------ETNFDVEIRTLSLVRH-RNI---------------L-- 890 (1119)
Q Consensus 836 ~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~E~~~l~~l~h-~ni---------------v-- 890 (1119)
+..+++||+|+||+||+|.+..+++.||||+++.. .+.+.+|+.+++.++| ++. +
T Consensus 80 ~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
T 3dzo_A 80 LVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKD 159 (413)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEEC
T ss_pred EEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhccc
Confidence 45568899999999999999999999999998621 3457899999999976 211 1
Q ss_pred ----EEeeeeec-----CCceEEEEeccCCCCHHHhhccC----CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEec
Q 001226 891 ----RIVGSCTK-----DEHGFIVTEYMPGGTLFNVLHQN----EPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHR 957 (1119)
Q Consensus 891 ----~l~~~~~~-----~~~~~lV~e~~~~gsL~~~l~~~----~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~ 957 (1119)
.+..++.. ....+++|+++ +++|.+++... .....+++..+..++.|+++||+|||+. +|+||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~iiHr 235 (413)
T 3dzo_A 160 PQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLVHT 235 (413)
T ss_dssp CC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred CCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence 11111121 12356777765 78999988521 1123578889999999999999999999 99999
Q ss_pred CCCCCCeEeCCCCceEEEeccccccccCCCCCCcccccccCCCccccccc----------CCCCCCCcchHHHHHHHHHH
Q 001226 958 DIKSDNILLDSELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENA----------YSTRLTEKSDVYSYGVILFE 1027 (1119)
Q Consensus 958 Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~sDvwslG~vl~e 1027 (1119)
||||+||+++.++.+||+|||+++..... .....| +.|+|||.+ ....++.++||||+||++||
T Consensus 236 DiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~e 309 (413)
T 3dzo_A 236 YLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYW 309 (413)
T ss_dssp CCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHH
T ss_pred CcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHH
Confidence 99999999999999999999998865432 334466 999999988 55668889999999999999
Q ss_pred HHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCCCchHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 001226 1028 LLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKALRLLELALECTRQVADMRPSMREVVGF 1105 (1119)
Q Consensus 1028 lltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPs~~ell~~ 1105 (1119)
|++|+.||........ . ...+..+. ..+..+.+++.+||+.||++||++.|++++
T Consensus 310 lltg~~Pf~~~~~~~~--~-----------------~~~~~~~~----~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~ 364 (413)
T 3dzo_A 310 IWCADLPNTDDAALGG--S-----------------EWIFRSCK----NIPQPVRALLEGFLRYPKEDRLLPLQAMET 364 (413)
T ss_dssp HHHSSCCCCTTGGGSC--S-----------------GGGGSSCC----CCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred HHHCCCCCCCcchhhh--H-----------------HHHHhhcc----cCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 9999999965321110 0 00011000 113468899999999999999997777543
No 294
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.7e-31 Score=303.30 Aligned_cols=291 Identities=23% Similarity=0.275 Sum_probs=172.9
Q ss_pred CCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEe
Q 001226 336 SSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELAL 415 (1119)
Q Consensus 336 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 415 (1119)
.+++.++++++.++ .+|..+. ++|+.|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 36788888888887 4555543 57888888888888766667788888888888888888777777777888888888
Q ss_pred ecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccC
Q 001226 416 YNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNG 495 (1119)
Q Consensus 416 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~ 495 (1119)
++|+++ .+|..+. ++|+.|++++|++++ ++...+..+++|+.|++++|.++. .+
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~ 161 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKS----------------------SG 161 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCG----------------------GG
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCc----------------------cC
Confidence 888777 4554443 577777777777763 333334445556666665555532 01
Q ss_pred CCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCC
Q 001226 496 SFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGN 575 (1119)
Q Consensus 496 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 575 (1119)
..+..+.++++|+.|++++|.++. +|..+. ++|+.|++++|++++..|..+..+++|++|+|++|++++..+..|.+
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 233344444444444444444442 222221 44555555555555444455555555555555555555544455555
Q ss_pred cccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhh------cccCCeeEccCccCcc--CCCccccc
Q 001226 576 LENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVIS------LEKMQSLSLQENNLSG--AIPDAFSS 647 (1119)
Q Consensus 576 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~~--~~p~~~~~ 647 (1119)
+++|++|+|++|++. .+|..+..+++|++|+|++|++++..+..|.. ...++.|++++|.+.. ..|..|..
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 555566666665555 45555555556666666666655444444322 2455666666666642 44566666
Q ss_pred cccccEeecCCc
Q 001226 648 VQSLFELQLGSN 659 (1119)
Q Consensus 648 l~~L~~L~L~~N 659 (1119)
+.+++.++|++|
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 666666666665
No 295
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.97 E-value=1.7e-32 Score=341.64 Aligned_cols=234 Identities=24% Similarity=0.269 Sum_probs=189.0
Q ss_pred HhhCCceeeecCCccEEEEEeCC-CceEEEEEeccccc-----ccHHHHHHHHhhcCCCCEEEEeeeeecCCc-----eE
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNN-SRKHWAVKKLNRSE-----TNFDVEIRTLSLVRHRNILRIVGSCTKDEH-----GF 903 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~-~~~~vavK~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-----~~ 903 (1119)
+|+..+.||+|+||+||+|.+.. +++.||||++.... ..+.+|+.+++.++||||+++++++.+.+. .|
T Consensus 81 ~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~ 160 (681)
T 2pzi_A 81 QYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGY 160 (681)
T ss_dssp TEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEE
T ss_pred ceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeE
Confidence 67778999999999999999976 68999999885332 346789999999999999999999987665 69
Q ss_pred EEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 904 IVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 904 lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+||||+++++|.+++.. .+++..+..++.||++||.|||+. +|+||||||+||+++.+ .+||+|||+++..
T Consensus 161 lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~~ 231 (681)
T 2pzi_A 161 IVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRI 231 (681)
T ss_dssp EEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEET
T ss_pred EEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchhc
Confidence 99999999999987754 489999999999999999999999 99999999999999986 8999999999876
Q ss_pred cCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccc
Q 001226 984 SDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFL 1063 (1119)
Q Consensus 984 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1119)
... ....||+.|+|||++.+.. +.++||||+||++|||++|..||........
T Consensus 232 ~~~------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~-------------------- 284 (681)
T 2pzi_A 232 NSF------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDGL-------------------- 284 (681)
T ss_dssp TCC------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSSC--------------------
T ss_pred ccC------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccccc--------------------
Confidence 432 3457899999999876554 8899999999999999999888753210000
Q ss_pred cccccCCCchHHHHHHHHHHHHHHccccCCCCCC-CHHHHHHHHHcc
Q 001226 1064 DREISFWDSDDQLKALRLLELALECTRQVADMRP-SMREVVGFLIKL 1109 (1119)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-s~~ell~~L~~~ 1109 (1119)
. ...........+.+++.+||+.||++|| +++++.+.+..+
T Consensus 285 ----~-~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 326 (681)
T 2pzi_A 285 ----P-EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGV 326 (681)
T ss_dssp ----C-TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred ----c-ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHH
Confidence 0 0011222345788999999999999999 466676666654
No 296
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.6e-31 Score=298.39 Aligned_cols=291 Identities=21% Similarity=0.241 Sum_probs=208.1
Q ss_pred CCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeec
Q 001226 312 NQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYL 391 (1119)
Q Consensus 312 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 391 (1119)
.+++.++++++.++ .+|..+. ++|+.|++++|++++..+..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 47899999999998 5676554 68999999999999887789999999999999999999888999999999999999
Q ss_pred cCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCccc-chhhhhccCCccceeccccceee
Q 001226 392 FNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGE-VALELGKHFPYLSRLDLTGNSFY 470 (1119)
Q Consensus 392 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~ 470 (1119)
++|+++. +|..+. ++|++|++++|++++..+..+.++++|+.|++++|+++.. .....+..+++|+.|++++|.++
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 9999995 454443 7999999999999988778899999999999999999731 22333445666666666666665
Q ss_pred CccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCcccc
Q 001226 471 GPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFG 550 (1119)
Q Consensus 471 ~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 550 (1119)
. +|..+ . ++|++|++++|++++..|..+..+++|+.|++++|++++..+..+.
T Consensus 185 ~-l~~~~------------------------~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 185 T-IPQGL------------------------P--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp S-CCSSC------------------------C--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred c-CCccc------------------------c--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 3 33322 1 4455555555555555555555555555555555555554555556
Q ss_pred ccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCccccc------CCCCcEEeccCccccc--cCChhhh
Q 001226 551 FWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGK------CTKMIKLDLSDNYLAG--SIPSEVI 622 (1119)
Q Consensus 551 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~~~ 622 (1119)
.+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|.. .+.|+.|++++|.+.. ..|..+.
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 6666666666666666 56666666666666666666666544444432 3567777777777642 4556677
Q ss_pred hcccCCeeEccCcc
Q 001226 623 SLEKMQSLSLQENN 636 (1119)
Q Consensus 623 ~l~~L~~L~L~~N~ 636 (1119)
.+..++.++|++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 77777777777774
No 297
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.5e-35 Score=350.40 Aligned_cols=386 Identities=20% Similarity=0.148 Sum_probs=243.3
Q ss_pred CCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCC----CcchhhcCCCCCceeeeccccccccCcccc-cCCC-
Q 001226 239 RNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEG----QIPETLWGLENLQKLVLSANKLNGTISGQI-SHCN- 312 (1119)
Q Consensus 239 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~- 312 (1119)
++|++|++++|++++......+..+++|++|+|++|++++ .++..+..+++|++|+|++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4678888888888755555557888888888888888874 346667777888888888888876444333 3344
Q ss_pred ---CCcEEEcccccccc----ccCcccCCCCCCCeEEccCCcccCCCCCCC-----CCCCCCcEEEcccCcCcccC----
Q 001226 313 ---QLQVIALSRNNLVG----QIPRSVGNLSSLNSLLLFNNRLQGTLPPEL-----GNCGSLVDLRLQHNFIGGTI---- 376 (1119)
Q Consensus 313 ---~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-----~~l~~L~~L~L~~N~i~~~~---- 376 (1119)
+|++|+|++|.+++ .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888774 446777788888888888887764333222 23456888888888777533
Q ss_pred chhhhcccccceeeccCccccCCCCccccc-----cCcceEEEeeccccccc----CCccccCCCCcCEEEccCccCccc
Q 001226 377 PPEICNLAKLEVLYLFNNRIEGAIPHQIGR-----MSKLVELALYNNRLTGR----IPPDITRLRNLQFLSLAHNHLTGE 447 (1119)
Q Consensus 377 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~ 447 (1119)
+..+..+++|+.|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|+.|++++|++++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 445556677777777777776544443332 45777777777777643 355566667777777777776643
Q ss_pred chhh----hhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCc
Q 001226 448 VALE----LGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPA 523 (1119)
Q Consensus 448 ~~~~----~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 523 (1119)
.... +...++.|++|++++|.+++.... .++..+..+++|++|++++|.+.+..+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------------DLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------------HHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------------HHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 2222 222345555555555555432000 0334444455555555555555433222
Q ss_pred cccC-----CCCcceeeccCcccCCC----CCccccccccceEEeccCCcccCCCCCccCC-----cccccEEEcccCcc
Q 001226 524 TLER-----NPGVSFLDVRGNLLQGS----IPPVFGFWSNLTMLDFSENRLSGSIPSELGN-----LENLQILRLSANKL 589 (1119)
Q Consensus 524 ~~~~-----l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l 589 (1119)
.+.. .++|+.|++++|.+++. ++..+..+++|++|+|++|++++..+..+.. .++|++|+|++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 2221 24666666666666543 3455556677888888888777554444432 56788888888888
Q ss_pred cC----cCCcccccCCCCcEEeccCccccccCChhhh-----hcccCCeeEccCccCccCCCcc
Q 001226 590 DG----RIPYELGKCTKMIKLDLSDNYLAGSIPSEVI-----SLEKMQSLSLQENNLSGAIPDA 644 (1119)
Q Consensus 590 ~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~~p~~ 644 (1119)
++ .+|..+..+++|++|||++|++++.-...+. ....|+.|++.++.+....++.
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 75 6777777888888888888888753222222 1235778888777776544443
No 298
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.97 E-value=8.4e-33 Score=314.85 Aligned_cols=240 Identities=16% Similarity=0.153 Sum_probs=182.5
Q ss_pred HHHhhCCceeeecCCccEEEEEeCCCceEEEEEeccccc------------ccHHHHHHHHhhcC---------CCCEEE
Q 001226 833 VIRATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE------------TNFDVEIRTLSLVR---------HRNILR 891 (1119)
Q Consensus 833 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~------------~~~~~E~~~l~~l~---------h~niv~ 891 (1119)
..+|+..+.||+|+||+||+|++ +++.||||+++... ..+.+|+.+++.++ ||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~ 96 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG 96 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred cccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence 46889999999999999999998 47999999986432 45788999998886 666666
Q ss_pred Eeee-----------------eec-------------CCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHH
Q 001226 892 IVGS-----------------CTK-------------DEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQ 941 (1119)
Q Consensus 892 l~~~-----------------~~~-------------~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~ 941 (1119)
+.++ +.+ ++..|+||||+++|++.+.+.+ ..+++..++.++.||+.
T Consensus 97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~----~~~~~~~~~~i~~qi~~ 172 (336)
T 2vuw_A 97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT----KLSSLATAKSILHQLTA 172 (336)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT----TCCCHHHHHHHHHHHHH
T ss_pred hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh----cCCCHHHHHHHHHHHHH
Confidence 6654 332 6788999999999987776644 24899999999999999
Q ss_pred HHHHHH-hCCCCCeEecCCCCCCeEeCCCC--------------------ceEEEeccccccccCCCCCCcccccccCCC
Q 001226 942 GLSYLH-YDCVPQIIHRDIKSDNILLDSEL--------------------EPKIGDFGMSKLISDSHSSSTRSAIVGSLG 1000 (1119)
Q Consensus 942 ~l~~LH-~~~~~~ivH~Dlkp~Nill~~~~--------------------~vkl~DfGla~~~~~~~~~~~~~~~~gt~~ 1000 (1119)
|++||| +. +|+||||||+|||++.++ .+||+|||+|+..... ...||+.
T Consensus 173 aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-------~~~gt~~ 242 (336)
T 2vuw_A 173 SLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-------IVVFCDV 242 (336)
T ss_dssp HHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------EEECCCC
T ss_pred HHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------cEEEeec
Confidence 999999 88 999999999999999887 8999999999876531 3479999
Q ss_pred cccccccCCCCCCCcchHHHHHHH-HHHHHhCCCCCCCCCCCCCceeehhhhhhcccccccccccccccCCCchHHHHHH
Q 001226 1001 YIAPENAYSTRLTEKSDVYSYGVI-LFELLFRKMPVDPSFGEDTDIVTWTRWKLQENHECICFLDREISFWDSDDQLKAL 1079 (1119)
Q Consensus 1001 y~aPE~~~~~~~~~~sDvwslG~v-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1119)
|+|||.+.+.. +.++||||+|++ .+++++|..||... .|..... .....................+.
T Consensus 243 y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ 310 (336)
T 2vuw_A 243 SMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV--------LWLHYLT---DKMLKQMTFKTKCNTPAMKQIKR 310 (336)
T ss_dssp TTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH--------HHHHHHH---HHHHHTCCCSSCCCSHHHHHHHH
T ss_pred ccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcch--------hhhhHHH---HhhhhhhccCcccchhhhhhcCH
Confidence 99999988666 889999998777 77788899887421 0100000 00000000000111122345677
Q ss_pred HHHHHHHHccccCCCCCCCHHHHH-HH
Q 001226 1080 RLLELALECTRQVADMRPSMREVV-GF 1105 (1119)
Q Consensus 1080 ~l~~l~~~cl~~dP~~RPs~~ell-~~ 1105 (1119)
++.+++.+||+.| |++|++ +|
T Consensus 311 ~~~dli~~~L~~d-----sa~e~l~~H 332 (336)
T 2vuw_A 311 KIQEFHRTMLNFS-----SATDLLCQH 332 (336)
T ss_dssp HHHHHHHHGGGSS-----SHHHHHHHC
T ss_pred HHHHHHHHHhccC-----CHHHHHhcC
Confidence 8999999999976 999998 54
No 299
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.4e-35 Score=348.70 Aligned_cols=340 Identities=22% Similarity=0.165 Sum_probs=177.9
Q ss_pred cccccCCCCCcEEEccCCccCCccChhhhhcCC----CccEEEcCCCccCC----CcchhhcCCCCCceeeecccccccc
Q 001226 232 PTSLSNCRNLVEFSASSNNFGGAISPWIFKGLL----QLEVLYLDDNNLEG----QIPETLWGLENLQKLVLSANKLNGT 303 (1119)
Q Consensus 232 p~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~----~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~ 303 (1119)
+..+..+++|++|++++|.+++......+..+. +|++|+|++|++++ .++..+..+++|++|+|++|.+++.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 344555555555555555554333333334444 46666666666663 3466666666777777777766543
Q ss_pred Ccccc-----cCCCCCcEEEcccccccccc----CcccCCCCCCCeEEccCCcccCCCCCCCC-----CCCCCcEEEccc
Q 001226 304 ISGQI-----SHCNQLQVIALSRNNLVGQI----PRSVGNLSSLNSLLLFNNRLQGTLPPELG-----NCGSLVDLRLQH 369 (1119)
Q Consensus 304 ~~~~~-----~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-----~l~~L~~L~L~~ 369 (1119)
.+..+ ...++|++|+|++|.+++.. +..+..+++|++|++++|.+++..+..+. ..++|++|++++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 33222 22445666666666665432 34445556666666666665533222222 234666666666
Q ss_pred CcCccc----CchhhhcccccceeeccCccccCCC-----CccccccCcceEEEeeccccccc----CCccccCCCCcCE
Q 001226 370 NFIGGT----IPPEICNLAKLEVLYLFNNRIEGAI-----PHQIGRMSKLVELALYNNRLTGR----IPPDITRLRNLQF 436 (1119)
Q Consensus 370 N~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~ 436 (1119)
|.+++. ++..+..+++|+.|++++|++++.. +..+..+++|++|++++|++++. ++..+..+++|+.
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence 666542 3445555666666666666655422 11222355666666666666542 3444555666666
Q ss_pred EEccCccCcccchhhhhcc----CCccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEe
Q 001226 437 LSLAHNHLTGEVALELGKH----FPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVIL 512 (1119)
Q Consensus 437 L~L~~N~l~~~~~~~~~~~----l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 512 (1119)
|++++|.+++..+..+... .+.|++|++++|.+++.... .++..+..+++|++|++
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS--------------------HFSSVLAQNRFLLELQI 348 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--------------------HHHHHHHHCSSCCEEEC
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH--------------------HHHHHHhhCCCccEEEc
Confidence 6666666654333332221 13444444444444432100 13334445555666666
Q ss_pred ccCccccCCCccccC-----CCCcceeeccCcccCC----CCCccccccccceEEeccCCcccCCCCCccC-----Cccc
Q 001226 513 SNNLLQGSLPATLER-----NPGVSFLDVRGNLLQG----SIPPVFGFWSNLTMLDFSENRLSGSIPSELG-----NLEN 578 (1119)
Q Consensus 513 s~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~ 578 (1119)
++|.+++..+..+.. .++|+.|++++|++++ .+|..+..+++|++|+|++|++++.-...+. ...+
T Consensus 349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~ 428 (461)
T 1z7x_W 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 428 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCC
T ss_pred cCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcc
Confidence 666555433333322 4566666666666654 5566666667777777777776643111111 1234
Q ss_pred ccEEEcccCcccC
Q 001226 579 LQILRLSANKLDG 591 (1119)
Q Consensus 579 L~~L~Ls~N~l~~ 591 (1119)
|+.|++.++.+..
T Consensus 429 L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 429 LEQLVLYDIYWSE 441 (461)
T ss_dssp CCEEECTTCCCCH
T ss_pred hhheeecccccCH
Confidence 6666666666553
No 300
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.4e-31 Score=329.79 Aligned_cols=412 Identities=15% Similarity=0.081 Sum_probs=201.5
Q ss_pred CCccccccCccCEEEccCccc---cCCCCcccc------------cccccceeeecccccccccCccCCCc-c-cccEEE
Q 001226 136 IPPEIFKLKRLSWLDLGYNSL---SGKIPPQVS------------LCYSLESIGFHNNFLNGELPNDICSL-P-KLKSLY 198 (1119)
Q Consensus 136 ~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L~~L~L~~n~l~~~~~~~l~~l-~-~L~~L~ 198 (1119)
.+..+..+++|++|+|+++.. .+.+|...+ .+++|++|+|++|.+++..+..+... + +|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 344566788999999987532 133443333 55666666666666665555555543 2 366666
Q ss_pred ecccc-ccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCCcc---ChhhhhcCCCccEEEcCCC
Q 001226 199 LNTNN-LTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGGAI---SPWIFKGLLQLEVLYLDDN 274 (1119)
Q Consensus 199 L~~n~-l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~~~---~~~~~~~l~~L~~L~L~~n 274 (1119)
+++|. ++. ..++....++++|++|++++|.+++.. ....+..+++|++|++++|
T Consensus 145 L~~~~~~~~----------------------~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n 202 (592)
T 3ogk_B 145 LDKCSGFTT----------------------DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT 202 (592)
T ss_dssp EESCEEEEH----------------------HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC
T ss_pred CcCCCCcCH----------------------HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc
Confidence 66654 110 012222234555555555555544332 1223344455555555555
Q ss_pred ccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCCccc---CC
Q 001226 275 NLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQ---GT 351 (1119)
Q Consensus 275 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~ 351 (1119)
.+++..+. ..+..+..+++|++|++++|.+.+ +|..+.++++|+.|+++.+... +.
T Consensus 203 ~~~~~~~~--------------------~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 203 EFAKISPK--------------------DLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp CCSSCCHH--------------------HHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred CCCccCHH--------------------HHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHH
Confidence 54421111 122223344444444444444442 3344444555555555432211 12
Q ss_pred CCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCC-ccccccCcceEEEeecccccc-cCCcccc
Q 001226 352 LPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIP-HQIGRMSKLVELALYNNRLTG-RIPPDIT 429 (1119)
Q Consensus 352 ~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~ 429 (1119)
.+..+..+++|+.|+++++... .+|..+..+++|++|+|++|.+++... ..+..+++|++|+++ |.+.+ .++..+.
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQ 339 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHH
T ss_pred HHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHH
Confidence 2334455566666666654332 445555566666666666666543322 224556666666666 33322 2222334
Q ss_pred CCCCcCEEEcc-----------CccCcccchhhhhccCCccceeccccceeeCccCCcccc-ccccceeecc----Cccc
Q 001226 430 RLRNLQFLSLA-----------HNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICV-GTNLFVLVLG----NNRF 493 (1119)
Q Consensus 430 ~l~~L~~L~L~-----------~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~L~~L~L~----~N~l 493 (1119)
.+++|+.|+++ .|.+++.....+...+++|++|+++.|.+++..+..+.. +++|+.|+++ .|++
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 55666666666 345554444444445566666666656555544444433 4455555553 4444
Q ss_pred cCC-----CCccccccccccEEEeccCc--cccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCccc
Q 001226 494 NGS-----FPIEIGKCSSLRRVILSNNL--LQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLS 566 (1119)
Q Consensus 494 ~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 566 (1119)
++. ++..+.++++|++|++++|. +++..+..+. ..+++|++|+|++|+++
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-----------------------~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-----------------------QYSPNVRWMLLGYVGES 476 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-----------------------HSCTTCCEEEECSCCSS
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-----------------------HhCccceEeeccCCCCC
Confidence 432 22224445566666665322 3322222221 12344555555555554
Q ss_pred C-CCCCccCCcccccEEEcccCcccCc-CCcccccCCCCcEEeccCccccc
Q 001226 567 G-SIPSELGNLENLQILRLSANKLDGR-IPYELGKCTKMIKLDLSDNYLAG 615 (1119)
Q Consensus 567 ~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~ 615 (1119)
+ .++..+.++++|+.|+|++|.+++. ++..+..+++|++|+|++|++++
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 3 2233344555555555555555432 23333445556666666666553
No 301
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.4e-31 Score=330.04 Aligned_cols=416 Identities=16% Similarity=0.096 Sum_probs=251.7
Q ss_pred ccCCCCcccccCCCccEEEcccccc---cccCCcccc------------ccCccCEEEccCccccCCCCcccccc--ccc
Q 001226 108 FTGSIPKQLGNCGQLKTLLLNDNRF---QGSIPPEIF------------KLKRLSWLDLGYNSLSGKIPPQVSLC--YSL 170 (1119)
Q Consensus 108 ~~~~~~~~l~~l~~L~~L~L~~n~i---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L 170 (1119)
+....+..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..++.. .+|
T Consensus 61 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L 140 (592)
T 3ogk_B 61 YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDL 140 (592)
T ss_dssp GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGC
T ss_pred cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccC
Confidence 3434555678899999999988632 134444443 68999999999999987777777764 459
Q ss_pred ceeeecccc-cccc-cCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccC
Q 001226 171 ESIGFHNNF-LNGE-LPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASS 248 (1119)
Q Consensus 171 ~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~ 248 (1119)
++|+|++|. ++.. .+.....+++|++|+|++|.+++.... .++..+.++++|++|++++
T Consensus 141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-------------------~l~~~~~~~~~L~~L~L~~ 201 (592)
T 3ogk_B 141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK-------------------WLHELAQHNTSLEVLNFYM 201 (592)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH-------------------HHHHHHHHCCCCCEEECTT
T ss_pred cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh-------------------HHHHHHhcCCCccEEEeec
Confidence 999999986 3322 222334789999999999988754221 1344556789999999999
Q ss_pred CccCCc---cChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeecccccc---ccCcccccCCCCCcEEEcccc
Q 001226 249 NNFGGA---ISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLN---GTISGQISHCNQLQVIALSRN 322 (1119)
Q Consensus 249 n~i~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N 322 (1119)
|.+++. ..+..+..+++|++|++++|.+.+ +|..+.++++|++|+++.+... ......+..+++|+.|+++++
T Consensus 202 n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 280 (592)
T 3ogk_B 202 TEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280 (592)
T ss_dssp CCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC
T ss_pred cCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc
Confidence 998732 224456788999999999999885 7788999999999999864332 223345666777777777765
Q ss_pred ccccccCcccCCCCCCCeEEccCCcccCCCC-CCCCCCCCCcEEEcccCcCcc-cCchhhhcccccceeeccC-------
Q 001226 323 NLVGQIPRSVGNLSSLNSLLLFNNRLQGTLP-PELGNCGSLVDLRLQHNFIGG-TIPPEICNLAKLEVLYLFN------- 393 (1119)
Q Consensus 323 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~i~~-~~~~~l~~l~~L~~L~L~~------- 393 (1119)
... .+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+ .++..+..+++|++|++++
T Consensus 281 ~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 281 GPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp CTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred chh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence 333 556666777777777777777653322 234666777777777 33332 2233334566677777762
Q ss_pred ----ccccCCCC-ccccccCcceEEEeecccccccCCccccC-CCCcCEEEcc----CccCccc----chhhhhccCCcc
Q 001226 394 ----NRIEGAIP-HQIGRMSKLVELALYNNRLTGRIPPDITR-LRNLQFLSLA----HNHLTGE----VALELGKHFPYL 459 (1119)
Q Consensus 394 ----N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~----~~~~~~~~l~~L 459 (1119)
|.+++... .....+++|++|+++.|++++..+..+.. +++|+.|+++ .|.+++. ....+...+++|
T Consensus 359 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 359 EDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp SSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred ccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 44443211 11234566666666666666554444443 5666666664 4555542 111223345555
Q ss_pred ceeccccceeeCccCCccccccccceeeccCccccCCCCccccc-cccccEEEeccCcccc-CCCccccCCCCcceeecc
Q 001226 460 SRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGK-CSSLRRVILSNNLLQG-SLPATLERNPGVSFLDVR 537 (1119)
Q Consensus 460 ~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~ 537 (1119)
++|++++|. +.+++..+..++. +++|++|++++|.+++ .++..+..+++|+.|+++
T Consensus 439 ~~L~L~~~~----------------------~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 439 RRFAFYLRQ----------------------GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp CEEEEECCG----------------------GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred CEEEEecCC----------------------CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 555554321 1133222222222 4455555555555443 223333444555555555
Q ss_pred CcccCCC-CCccccccccceEEeccCCcccC
Q 001226 538 GNLLQGS-IPPVFGFWSNLTMLDFSENRLSG 567 (1119)
Q Consensus 538 ~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~ 567 (1119)
+|.+++. ++..+..+++|++|+|++|+++.
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 5554322 22223345556666666666553
No 302
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.1e-30 Score=292.74 Aligned_cols=256 Identities=20% Similarity=0.225 Sum_probs=157.6
Q ss_pred ccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeecc
Q 001226 458 YLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVR 537 (1119)
Q Consensus 458 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 537 (1119)
.|++|++++|.+++..+..+..+++|++|++++|++++..|..++++++|++|++++|++++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 34444444444443333345555555555555555555555555566666666666666654444445556666666666
Q ss_pred CcccCCCCC-ccccccccceEEeccCC-cccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccc
Q 001226 538 GNLLQGSIP-PVFGFWSNLTMLDFSEN-RLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAG 615 (1119)
Q Consensus 538 ~N~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 615 (1119)
+|++++..+ ..+..+++|++|++++| .+.+..|..|.++++|++|++++|++.+..|..+..+++|++|++++|+++.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 666653222 25566666666666666 3554445566666666666666666666666666666666666666666653
Q ss_pred cCChh-hhhcccCCeeEccCccCccCCCccccc---cccccEeecCCcccCCCccccchhhccccceeeeccccccC---
Q 001226 616 SIPSE-VISLEKMQSLSLQENNLSGAIPDAFSS---VQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSG--- 688 (1119)
Q Consensus 616 ~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~--- 688 (1119)
+|.. +..+++|+.|+|++|++++..+..+.. ...++. +++++|.+++
T Consensus 213 -~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~-------------------------l~L~~~~l~~~~l 266 (353)
T 2z80_A 213 -LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK-------------------------FTFRNVKITDESL 266 (353)
T ss_dssp -HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCE-------------------------EEEESCBCCHHHH
T ss_pred -chhhhhhhcccccEEECCCCccccccccccccccccchhhc-------------------------cccccccccCcch
Confidence 3333 334566666666666666544443332 223333 4444444443
Q ss_pred -CcccccccccccceeeccCceecccCCccc-cccccceEEecccccccccCCC
Q 001226 689 -KIPECLGNLDKLQILDLSSNSFSGEIPTEV-NNMVSLYFVNISFNHFSGKLPA 740 (1119)
Q Consensus 689 -~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~-~~~~~l~~l~ls~N~~~g~~p~ 740 (1119)
.+|+.++++++|+.|||++|+|+ .+|+.+ ..+++|+.+++++|+++|..|.
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 57888999999999999999998 778775 8899999999999999998874
No 303
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.3e-28 Score=278.18 Aligned_cols=224 Identities=20% Similarity=0.270 Sum_probs=132.8
Q ss_pred ccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEecc
Q 001226 482 NLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFS 561 (1119)
Q Consensus 482 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls 561 (1119)
+++.|+|++|+++ .+|..++++++|++|+|++|.++ .+|..+..+++|++|++++|+++ .+|..++.+++|++|+|+
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 3444444444444 34444444444555555544444 44444444444444444444444 344444445555555555
Q ss_pred CCcccCCCCCccC---------CcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEc
Q 001226 562 ENRLSGSIPSELG---------NLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSL 632 (1119)
Q Consensus 562 ~N~l~~~~p~~~~---------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 632 (1119)
+|++.+.+|..++ ++++|++|+|++|+++ .+|..++.+++|++|+|++|++++ +|..+..+++|+.|+|
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEEC
Confidence 5444444444443 3666666666666665 566666666666666666666663 4555666666666666
Q ss_pred cCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecc
Q 001226 633 QENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSG 712 (1119)
Q Consensus 633 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 712 (1119)
++|++.+.+|..|+.+++|+. |++++|++.+.+|..++++++|+.|||++|++.|
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~-------------------------L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKR-------------------------LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCE-------------------------EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred cCCcchhhhHHHhcCCCCCCE-------------------------EECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 666666666666666666655 4555555556677777777888888888888888
Q ss_pred cCCccccccccceEEeccccccc
Q 001226 713 EIPTEVNNMVSLYFVNISFNHFS 735 (1119)
Q Consensus 713 ~ip~~~~~~~~l~~l~ls~N~~~ 735 (1119)
.+|+++..+++|+.++++.|.+.
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGGGSC
T ss_pred hccHHHhhccCceEEeCCHHHHH
Confidence 88888888888888888776554
No 304
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.3e-29 Score=277.50 Aligned_cols=249 Identities=20% Similarity=0.191 Sum_probs=171.4
Q ss_pred ceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccc--hhhhhccCCccceecc
Q 001226 387 EVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEV--ALELGKHFPYLSRLDL 464 (1119)
Q Consensus 387 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L 464 (1119)
+.++.+++.++. +|..+. ++|++|++++|+++...+..|.++++|+.|+|++|+++... +..+. .+++|++|++
T Consensus 10 ~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEEC
T ss_pred CEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEEC
Confidence 467777777773 444332 57778888888877444445677777888888777776321 22222 2444444444
Q ss_pred ccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCC-ccccCCCCcceeeccCcccCC
Q 001226 465 TGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLP-ATLERNPGVSFLDVRGNLLQG 543 (1119)
Q Consensus 465 ~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~ 543 (1119)
++ |.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+
T Consensus 86 s~------------------------n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 86 SF------------------------NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp CS------------------------CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CC------------------------Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc
Confidence 44 4444 344455666666666666666665444 456666777777777777766
Q ss_pred CCCccccccccceEEeccCCcccC-CCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhh
Q 001226 544 SIPPVFGFWSNLTMLDFSENRLSG-SIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVI 622 (1119)
Q Consensus 544 ~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 622 (1119)
..|..+..+++|++|+|++|++++ .+|..+.++++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+.
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 666777777778888888887775 4677788888888888888888776677788888888888888888776666777
Q ss_pred hcccCCeeEccCccCccCCCccccccc-cccEeecCCcccCCC
Q 001226 623 SLEKMQSLSLQENNLSGAIPDAFSSVQ-SLFELQLGSNIFDGS 664 (1119)
Q Consensus 623 ~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~ 664 (1119)
.+++|+.|+|++|++++..|..+..++ +|+.|+|++|.+++.
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 788888888888888887888887774 788877777777643
No 305
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6.5e-29 Score=278.75 Aligned_cols=258 Identities=20% Similarity=0.202 Sum_probs=155.7
Q ss_pred ccceeccccceeeCccCCccccccccceeeccCccccC--CCCccccccccccEEEeccCccccCCCccccCCCCcceee
Q 001226 458 YLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNG--SFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLD 535 (1119)
Q Consensus 458 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 535 (1119)
.|++|++++|.++...+..+..+++|++|+|++|+++. ..|..+..+++|++|++++|.+.+ +|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence 34444444444443222334455555555555555542 224555567777777777777763 455566677777777
Q ss_pred ccCcccCCCCC-ccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccC-cCCcccccCCCCcEEeccCccc
Q 001226 536 VRGNLLQGSIP-PVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDG-RIPYELGKCTKMIKLDLSDNYL 613 (1119)
Q Consensus 536 l~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l 613 (1119)
+++|++++..+ ..+..+++|++|++++|++++..|..|.++++|++|+|++|++.+ .+|..+..+++|++|+|++|++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 77777765444 456666677777777777766666666666777777777777664 4566666667777777777776
Q ss_pred cccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccc
Q 001226 614 AGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPEC 693 (1119)
Q Consensus 614 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~ 693 (1119)
++..|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++| ++++..|..
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-------------------------~l~~~~~~~ 242 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-------------------------HIMTSKKQE 242 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-------------------------CCCBCSSSS
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-------------------------CCcccCHHH
Confidence 6656666666666777777777666655556666666666555555 455555555
Q ss_pred cccc-cccceeeccCceecccCC--ccccccccceEEecccccccccCCCc
Q 001226 694 LGNL-DKLQILDLSSNSFSGEIP--TEVNNMVSLYFVNISFNHFSGKLPAS 741 (1119)
Q Consensus 694 ~~~l-~~L~~L~Ls~N~l~g~ip--~~~~~~~~l~~l~ls~N~~~g~~p~~ 741 (1119)
+..+ ++|+.|+|++|+|++..+ .....+...+.+.+..|.+.+..|+.
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred HHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 6655 367777777777765422 11222333334455666666666654
No 306
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=282.56 Aligned_cols=278 Identities=19% Similarity=0.167 Sum_probs=173.5
Q ss_pred ccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccC
Q 001226 266 LEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFN 345 (1119)
Q Consensus 266 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 345 (1119)
....++++++++ .+|..+. ++|++|++++|+++++.+..|..+++|++|+|++|++++..|..|.++++|++|++++
T Consensus 33 ~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 33 NGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 344566666666 3454443 3667777777777666666667777777777777777666666677777777777777
Q ss_pred CcccCCCCCCCCCCCCCcEEEcccCcCcccCc-hhhhcccccceeeccCc-cccCCCCccccccCcceEEEeeccccccc
Q 001226 346 NRLQGTLPPELGNCGSLVDLRLQHNFIGGTIP-PEICNLAKLEVLYLFNN-RIEGAIPHQIGRMSKLVELALYNNRLTGR 423 (1119)
Q Consensus 346 N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 423 (1119)
|++++..+..+.++++|++|++++|++++..+ ..+.++++|++|++++| .++...+..|..+++|++|++++|++++.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 77764444446667777777777777764333 35667777777777777 46656666777777777777777777777
Q ss_pred CCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCccccc
Q 001226 424 IPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGK 503 (1119)
Q Consensus 424 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~ 503 (1119)
.|..+..+++|++|++++|+++ .++..++..+++|+.|++++|.+++..+..+.. ...
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~~~ 247 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------------GET 247 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------C
T ss_pred CHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccc---------------------ccc
Confidence 7777777777888888877775 455555556777777777777776654433321 011
Q ss_pred cccccEEEeccCcccc----CCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCC
Q 001226 504 CSSLRRVILSNNLLQG----SLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGS 568 (1119)
Q Consensus 504 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 568 (1119)
.+.++.+++++|.+++ .+|..+..+++|+.|++++|+++...+..|..+++|++|+|++|.+.+.
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 2233444444444433 2445555666666666666666632222346666677777777766643
No 307
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.3e-28 Score=268.30 Aligned_cols=208 Identities=24% Similarity=0.215 Sum_probs=150.4
Q ss_pred CccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCc-cccCCCccccCCCCcceee
Q 001226 457 PYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNL-LQGSLPATLERNPGVSFLD 535 (1119)
Q Consensus 457 ~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~ 535 (1119)
+.|++|++++|.+++..+..+..+++|++|++++|++++..|..+.++++|++|++++|+ +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555555555556666666777777777666666677777777777777776 6655567777777777777
Q ss_pred ccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccc
Q 001226 536 VRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAG 615 (1119)
Q Consensus 536 l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 615 (1119)
+++|++++..|..+..+++|++|+|++|++++..+..|+++++|++|+|++|++++..+..+..+++|++|+|++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 77777777667777777778888888888776666667777888888888888875555567777888888888888877
Q ss_pred cCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCC
Q 001226 616 SIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGS 664 (1119)
Q Consensus 616 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 664 (1119)
..|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 7777777778888888888888876667777888888877777777643
No 308
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.1e-29 Score=283.26 Aligned_cols=248 Identities=20% Similarity=0.181 Sum_probs=167.8
Q ss_pred ccCCccceeccccceeeCccCCccccccccceeeccCccc-cCCCCcccc-------ccccccEEEeccCccccCCCccc
Q 001226 454 KHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRF-NGSFPIEIG-------KCSSLRRVILSNNLLQGSLPATL 525 (1119)
Q Consensus 454 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l-~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~ 525 (1119)
...++|+.|++++|.+ .+|..+... |+.|+|++|++ ...+|..+. ++++|++|+|++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3456778888888887 566655443 77888888887 345665554 67778888888888877777765
Q ss_pred --cCCCCcceeeccCcccCCCCCcccccc-----ccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCc--CCcc
Q 001226 526 --ERNPGVSFLDVRGNLLQGSIPPVFGFW-----SNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGR--IPYE 596 (1119)
Q Consensus 526 --~~l~~L~~L~l~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~ 596 (1119)
..+++|++|++++|++++. |..++.+ ++|++|+|++|++++..|..|+++++|++|+|++|++.+. +|..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7777777777777777765 6666665 7777777777777766667777777777777777776654 2223
Q ss_pred c--ccCCCCcEEeccCccccc--cCC-hhhhhcccCCeeEccCccCccCCC-ccccccccccEeecCCcccCCCccccch
Q 001226 597 L--GKCTKMIKLDLSDNYLAG--SIP-SEVISLEKMQSLSLQENNLSGAIP-DAFSSVQSLFELQLGSNIFDGSIPCSLS 670 (1119)
Q Consensus 597 ~--~~l~~L~~L~Ls~N~l~~--~~p-~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 670 (1119)
+ ..+++|++|+|++|++++ .++ ..+..+++|++|+|++|++++.+| ..+..+++|+.|+|++|.+
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l--------- 265 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--------- 265 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC---------
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc---------
Confidence 3 667777777777777762 122 223455677777777777776654 4455566666655555554
Q ss_pred hhccccceeeeccccccCCcccccccccccceeeccCceecccCCccccccccceEEecccccccc
Q 001226 671 KLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVNNMVSLYFVNISFNHFSG 736 (1119)
Q Consensus 671 ~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~l~~l~ls~N~~~g 736 (1119)
+ .+|..+. ++|++|||++|+|++. |. +..+++|+.+++++|++++
T Consensus 266 ----------------~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 266 ----------------K-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ----------------S-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ----------------C-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 4 4555554 6677777777777754 55 6777777777777777765
No 309
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.2e-29 Score=283.07 Aligned_cols=250 Identities=22% Similarity=0.223 Sum_probs=210.9
Q ss_pred cccCCCCcCEEEccCccCcccchhhhhccCCccceecccccee-eCccCCccc-------cccccceeeccCccccCCCC
Q 001226 427 DITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSF-YGPIPANIC-------VGTNLFVLVLGNNRFNGSFP 498 (1119)
Q Consensus 427 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~p~~~~-------~~~~L~~L~L~~N~l~~~~p 498 (1119)
.++..++|+.|++++|.+ .+|..+... |+.|+|++|.+ ...+|..+. .+++|++|+|++|++++.+|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 456678899999999999 677766654 89999999999 456776665 68999999999999999999
Q ss_pred ccc--cccccccEEEeccCccccCCCccccCC-----CCcceeeccCcccCCCCCccccccccceEEeccCCcccCC--C
Q 001226 499 IEI--GKCSSLRRVILSNNLLQGSLPATLERN-----PGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGS--I 569 (1119)
Q Consensus 499 ~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~ 569 (1119)
..+ +.+++|++|+|++|++++. |..+..+ ++|++|++++|++++..|..|+.+++|++|+|++|++.+. .
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 987 8999999999999999987 8888887 9999999999999998889999999999999999998765 3
Q ss_pred CCcc--CCcccccEEEcccCcccC--cCC-cccccCCCCcEEeccCccccccCC-hhhhhcccCCeeEccCccCccCCCc
Q 001226 570 PSEL--GNLENLQILRLSANKLDG--RIP-YELGKCTKMIKLDLSDNYLAGSIP-SEVISLEKMQSLSLQENNLSGAIPD 643 (1119)
Q Consensus 570 p~~~--~~l~~L~~L~Ls~N~l~~--~~p-~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~ 643 (1119)
|..+ .++++|++|+|++|++++ .++ ..+..+++|++|||++|++++.+| ..+..+++|++|+|++|+|+ .+|.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 4444 899999999999999983 222 345678999999999999998775 45667899999999999999 7888
Q ss_pred cccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecc
Q 001226 644 AFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSG 712 (1119)
Q Consensus 644 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 712 (1119)
.+. ++|++|+|++|+ |++. |. +..+++|+.|+|++|+|++
T Consensus 271 ~~~--~~L~~L~Ls~N~-------------------------l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNR-------------------------LDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCC--SEEEEEECCSSC-------------------------CCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcc--CCceEEECCCCC-------------------------CCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 776 777775555554 4433 55 7788889999999998875
No 310
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.5e-29 Score=282.04 Aligned_cols=265 Identities=22% Similarity=0.258 Sum_probs=149.3
Q ss_pred EEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccC
Q 001226 436 FLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNN 515 (1119)
Q Consensus 436 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 515 (1119)
.++++.+.+. ..+..++..+++|++|+|++|.+++..|..+..+++|++|+|++|++++..+ +..+++|++|++++|
T Consensus 14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 4455555554 3333444445556666666666655555555555566666666666554333 555666666666666
Q ss_pred ccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCc
Q 001226 516 LLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPY 595 (1119)
Q Consensus 516 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 595 (1119)
++++.. ..++|+.|++++|++++..+.. +++|++|+|++|++++..|..++++++|++|+|++|++.+..|.
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 655322 2245555555555554433222 34455555555555544444555555555555555555544444
Q ss_pred cc-ccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhcc
Q 001226 596 EL-GKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHH 674 (1119)
Q Consensus 596 ~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 674 (1119)
.+ ..+++|++|+|++|++++. |.. ..+++|+.|+|++|++++ +|..|..+++|+.
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~--------------------- 218 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW--------------------- 218 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-ECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSE---------------------
T ss_pred HHhhccCcCCEEECCCCcCccc-ccc-cccccCCEEECCCCcCCc-chhhhcccCcccE---------------------
Confidence 33 2455555555555555432 211 124555555555555553 2233444555544
Q ss_pred ccceeeeccccccCCcccccccccccceeeccCceec-ccCCccccccccceEEecc-cccccccCCC
Q 001226 675 FSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFS-GEIPTEVNNMVSLYFVNIS-FNHFSGKLPA 740 (1119)
Q Consensus 675 ~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-g~ip~~~~~~~~l~~l~ls-~N~~~g~~p~ 740 (1119)
|++++|+++ .+|..+..+++|+.|+|++|+++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus 219 ----L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 219 ----ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp ----EECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ----EECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 555555555 46777778888888888888887 7788888888888888888 5577777664
No 311
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.9e-27 Score=263.79 Aligned_cols=253 Identities=22% Similarity=0.225 Sum_probs=136.2
Q ss_pred ceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCc
Q 001226 460 SRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGN 539 (1119)
Q Consensus 460 ~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 539 (1119)
..++.+++.++. +|..+ .++|+.|++++|++++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 345555555542 23322 245555555555555444444555555555555555555544555555555555555555
Q ss_pred c-cCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCC
Q 001226 540 L-LQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIP 618 (1119)
Q Consensus 540 ~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 618 (1119)
+ +....|..+..+++|++|+|++|++++..|..|.++++|++|++++|++.+..+..+..+++|++|+|++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 4 443334445555555555555555554444445555555555555555543333344455555555555555544333
Q ss_pred hhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCccccccccc
Q 001226 619 SEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLD 698 (1119)
Q Consensus 619 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~ 698 (1119)
..+..+++|+.|+|++|++++..|..|..+++|+. |++++|++++..|+.+..++
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-------------------------L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT-------------------------LYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-------------------------EECCSSCCSCCCHHHHTTCT
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccE-------------------------eeCCCCcCCcCCHHHcccCc
Confidence 34444555555555555555444555554444444 55666666655566677888
Q ss_pred ccceeeccCceecccCCccccccccceEEecccccccccCCCc
Q 001226 699 KLQILDLSSNSFSGEIPTEVNNMVSLYFVNISFNHFSGKLPAS 741 (1119)
Q Consensus 699 ~L~~L~Ls~N~l~g~ip~~~~~~~~l~~l~ls~N~~~g~~p~~ 741 (1119)
+|+.|+|++|+++...+.. .....++.+..+.|.+.+..|..
T Consensus 226 ~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred ccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 8888888888887654432 12234555667778888877764
No 312
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=9.1e-29 Score=278.68 Aligned_cols=255 Identities=19% Similarity=0.183 Sum_probs=123.7
Q ss_pred EEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCcc
Q 001226 364 DLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNH 443 (1119)
Q Consensus 364 ~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 443 (1119)
.++++.+.+.......+..+++|++|+|++|++++..|..|..+++|++|++++|++++..+ +..+++|++|++++|+
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 33444444443333334445556666666666655555555556666666666666554332 5556666666666665
Q ss_pred CcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCc
Q 001226 444 LTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPA 523 (1119)
Q Consensus 444 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 523 (1119)
+++.. ..+.|++|++++|++++..+.. +++|+.|++++|++++..+..++.+++|++|++++|.+++..+.
T Consensus 92 l~~l~------~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 92 VQELL------VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEE------ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred ccccc------CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 55321 1245555555555554433322 23455555555555544444555555555555555555544443
Q ss_pred cc-cCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCC
Q 001226 524 TL-ERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTK 602 (1119)
Q Consensus 524 ~~-~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 602 (1119)
.+ ..+++|++|++++|++++. |. ...+++|++|+|++|+|++ +|..+..+++|+.|+|++|+++ .+|..+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred HHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCC
Confidence 33 2344444444444444432 11 1124445555555555542 2333444445555555555554 34444444445
Q ss_pred CcEEeccCcccc-ccCChhhhhcccCCeeEcc
Q 001226 603 MIKLDLSDNYLA-GSIPSEVISLEKMQSLSLQ 633 (1119)
Q Consensus 603 L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~ 633 (1119)
|+.|+|++|+++ +.+|..+..++.|+.|+++
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 555555555444 3444444444444444444
No 313
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.1e-26 Score=282.26 Aligned_cols=268 Identities=27% Similarity=0.358 Sum_probs=140.1
Q ss_pred ccceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceecc
Q 001226 385 KLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDL 464 (1119)
Q Consensus 385 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 464 (1119)
+++.|++++|.++ .+|..+. ++|++|++++|+++ .+|. .+++|++|+|++|+|++ +|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC----CCCCCCEEEC
Confidence 4566666666665 3343333 45666666666665 3443 34556666666665552 222 2344444444
Q ss_pred ccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCC
Q 001226 465 TGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGS 544 (1119)
Q Consensus 465 ~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 544 (1119)
++|++++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|++++
T Consensus 109 s~N~l~~-------------------------l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~- 155 (622)
T 3g06_A 109 FSNPLTH-------------------------LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS- 155 (622)
T ss_dssp CSCCCCC-------------------------CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred cCCcCCC-------------------------CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-
Confidence 4444442 121 23344444444444442 2221 2445555555555543
Q ss_pred CCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhc
Q 001226 545 IPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISL 624 (1119)
Q Consensus 545 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 624 (1119)
+|. .+++|+.|++++|+|++ +| ..+++|+.|+|++|++++ +|.. +++|+.|++++|+++ .+|.. +
T Consensus 156 l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~ 220 (622)
T 3g06_A 156 LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---P 220 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---C
T ss_pred cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---C
Confidence 232 22456666666666653 44 334566666666666663 4432 356666666666665 34432 3
Q ss_pred ccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceee
Q 001226 625 EKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILD 704 (1119)
Q Consensus 625 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 704 (1119)
++|+.|+|++|+|++ +| ..+++|+.|+|++|.++ .+|..+.+ +..|++++|+|+ .+|..++++++|+.|+
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~~~~~----L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPMLPSG----LLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCCCTT----CCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCccccc----CcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 556666666666664 44 33455666666666555 34432111 123556666666 5666667777777777
Q ss_pred ccCceecccCCccccccc
Q 001226 705 LSSNSFSGEIPTEVNNMV 722 (1119)
Q Consensus 705 Ls~N~l~g~ip~~~~~~~ 722 (1119)
|++|+|+|.+|..+..+.
T Consensus 291 L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 291 LEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSCCCCHHHHHHHHHHH
T ss_pred ecCCCCCCcCHHHHHhcc
Confidence 777777776666655543
No 314
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.9e-26 Score=273.48 Aligned_cols=229 Identities=22% Similarity=0.178 Sum_probs=152.7
Q ss_pred CcccEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCcccccccccceeee
Q 001226 96 QHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESIGF 175 (1119)
Q Consensus 96 ~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 175 (1119)
+++++|+|++|++++..|..|+++++|++|+|++|+|++..|..+.++++|++|+|++|++++..+..+..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57778888888877777777777888888888888777776777777777777777777777555555666666666666
Q ss_pred cccccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCCcc
Q 001226 176 HNNFLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGGAI 255 (1119)
Q Consensus 176 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~~~ 255 (1119)
++|.++...+..|.++++|++|++++| +..+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~-----------------------------------------------~~l~~i 187 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGEL-----------------------------------------------KKLEYI 187 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCC-----------------------------------------------TTCCEE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCC-----------------------------------------------CCcccc
Confidence 666666555555555666666655553 222233
Q ss_pred ChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCC
Q 001226 256 SPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNL 335 (1119)
Q Consensus 256 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 335 (1119)
+...|.++++|++|+|++|++++. | .+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 444555666666666666666643 3 35666677777777777776666666667777777777776666666666666
Q ss_pred CCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCc
Q 001226 336 SSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIG 373 (1119)
Q Consensus 336 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~ 373 (1119)
++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77777777777666555556666666666666666654
No 315
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=271.99 Aligned_cols=245 Identities=23% Similarity=0.169 Sum_probs=160.1
Q ss_pred EecCCCcccccCccchhhhccCCcccEEEcCCCcccCCCCcccccCCCccEEEcccccccccCCccccccCccCEEEccC
Q 001226 74 LNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGY 153 (1119)
Q Consensus 74 l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~ 153 (1119)
+++++.+++.++... .+++++|+|++|++++..+..|.++++|++|+|++|++++..+..+.++++|++|+|++
T Consensus 48 v~c~~~~l~~iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 48 VICVRKNLREVPDGI------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp EECCSCCCSSCCSCC------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred EEeCCCCcCcCCCCC------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 344445565544321 25777888888888777777788888888888888888776667777778888888887
Q ss_pred ccccCCCCcccccccccceeeecccccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccc
Q 001226 154 NSLSGKIPPQVSLCYSLESIGFHNNFLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPT 233 (1119)
Q Consensus 154 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~ 233 (1119)
|++++..+..|..+++|++|+|++|.++...+..|..+++|++|++++|+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~------------------------------ 171 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK------------------------------ 171 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT------------------------------
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC------------------------------
Confidence 77775555566666666666666666665555556666666666665532
Q ss_pred cccCCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCC
Q 001226 234 SLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQ 313 (1119)
Q Consensus 234 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 313 (1119)
..+.+.+..|.++++|++|+|++|+++. +| .+..+++|++|+|++|++++..+..|..+++
T Consensus 172 -----------------~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 172 -----------------RLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp -----------------TCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred -----------------CcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCcc
Confidence 2223334455556666666666666663 33 3566667777777777776666666666666
Q ss_pred CcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCc
Q 001226 314 LQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIG 373 (1119)
Q Consensus 314 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~ 373 (1119)
|++|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 666666666666666666666666666777666666555556666666666666666654
No 316
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.2e-26 Score=272.89 Aligned_cols=247 Identities=22% Similarity=0.197 Sum_probs=158.6
Q ss_pred cEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCc
Q 001226 315 QVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNN 394 (1119)
Q Consensus 315 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N 394 (1119)
..++.+++.++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34444444444 3443332 45666666666666555666666666666666666666555566666666666666666
Q ss_pred cccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccC
Q 001226 395 RIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIP 474 (1119)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 474 (1119)
++++..+..|..+++|++|+|++|+++...+..|.++++|+.|++++|...+.++...+..+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l------------------ 195 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL------------------ 195 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC------------------
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC------------------
Confidence 66655555566666666666666666655555566666666666666433333333333333
Q ss_pred CccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCcccccccc
Q 001226 475 ANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSN 554 (1119)
Q Consensus 475 ~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 554 (1119)
++|+.|+|++|++++ +| .+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|..+++
T Consensus 196 ------~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 196 ------FNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp ------TTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ------CCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 444444444444442 22 3556667777777777777777777777777777777777777777777888888
Q ss_pred ceEEeccCCcccCCCCCccCCcccccEEEcccCccc
Q 001226 555 LTMLDFSENRLSGSIPSELGNLENLQILRLSANKLD 590 (1119)
Q Consensus 555 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 590 (1119)
|++|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 888888888888777777888888999999998886
No 317
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.4e-26 Score=277.87 Aligned_cols=128 Identities=28% Similarity=0.360 Sum_probs=80.4
Q ss_pred CCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEec
Q 001226 529 PGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDL 608 (1119)
Q Consensus 529 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 608 (1119)
++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|.. +++|+.|+|++|++++ +| ..+++|+.|+|
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L 248 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMV 248 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred CCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence 444444444444443 3322 245666666666666 34432 3567777777777763 55 34566777777
Q ss_pred cCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhc
Q 001226 609 SDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLH 673 (1119)
Q Consensus 609 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 673 (1119)
++|+|+ .+|. .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|++++.+|..+..+.
T Consensus 249 s~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 249 SGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 777776 3554 4566777777777777 5677777777777777777777777777666655
No 318
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=9.4e-30 Score=313.75 Aligned_cols=454 Identities=15% Similarity=0.105 Sum_probs=206.7
Q ss_pred CceeeeeeeecCCCceEEEecCCCcccccCccchhhhccCCcccEEEcCCCcccC---CCCc------------ccccCC
Q 001226 56 PCKWSGVSCYNNSSSLKALNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTG---SIPK------------QLGNCG 120 (1119)
Q Consensus 56 ~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~---~~~~------------~l~~l~ 120 (1119)
|++|.++... ....++++++. +..+ ...+..+++|++|+|+++.... ..|. ....++
T Consensus 34 ck~W~~~~~~----~~~~l~~~~~~--~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~ 105 (594)
T 2p1m_B 34 CKSWYEIERW----CRRKVFIGNCY--AVSP--ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105 (594)
T ss_dssp CHHHHHHHHH----HCCEEEESSTT--SSCH--HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHHHHHhhhh----hceEEeecccc--ccCH--HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence 6679988322 23455665542 2222 1335567888888888875321 1111 123455
Q ss_pred CccEEEcccccccccCCcccc-ccCccCEEEccCc-cccCC-CCcccccccccceeeecccccccccCccCCCcccccEE
Q 001226 121 QLKTLLLNDNRFQGSIPPEIF-KLKRLSWLDLGYN-SLSGK-IPPQVSLCYSLESIGFHNNFLNGELPNDICSLPKLKSL 197 (1119)
Q Consensus 121 ~L~~L~L~~n~i~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 197 (1119)
+|++|+|++|.+++..+..+. .+++|++|+|++| .+++. ++..+.++++|++|++++|.+++..+..+.
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~-------- 177 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS-------- 177 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG--------
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH--------
Confidence 666666666666655555554 4566666666665 33322 112222444444444444444433222222
Q ss_pred EeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCc--cCCccChhhhhcCCCccEEEcCCC-
Q 001226 198 YLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNN--FGGAISPWIFKGLLQLEVLYLDDN- 274 (1119)
Q Consensus 198 ~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~L~~n- 274 (1119)
.....+++|++|++++|. ++.......+..+++|++|++++|
T Consensus 178 -----------------------------------~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 178 -----------------------------------HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp -----------------------------------GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred -----------------------------------HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 222344455555555554 111111222233466666666666
Q ss_pred ccCCCcchhhcCCCCCceeeecc-------ccccccCcccccCCCCCcEE-EccccccccccCcccCCCCCCCeEEccCC
Q 001226 275 NLEGQIPETLWGLENLQKLVLSA-------NKLNGTISGQISHCNQLQVI-ALSRNNLVGQIPRSVGNLSSLNSLLLFNN 346 (1119)
Q Consensus 275 ~l~~~~p~~l~~l~~L~~L~Ls~-------N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 346 (1119)
.+++ +|..+..+++|++|+++. |.+.+. +..+.++++|+.| .+.+... +.++..+..+++|++|++++|
T Consensus 223 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 223 PLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp CHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTC
T ss_pred cHHH-HHHHHhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCC
Confidence 3333 555566666666666433 233332 2245566666666 2332221 123333345556666666666
Q ss_pred cccCCCC-CCCCCCCCCcEEEcccCcCcccCchh-hhcccccceeeccC---------ccccCCCCcccc-ccCcceEEE
Q 001226 347 RLQGTLP-PELGNCGSLVDLRLQHNFIGGTIPPE-ICNLAKLEVLYLFN---------NRIEGAIPHQIG-RMSKLVELA 414 (1119)
Q Consensus 347 ~l~~~~~-~~l~~l~~L~~L~L~~N~i~~~~~~~-l~~l~~L~~L~L~~---------N~l~~~~~~~~~-~l~~L~~L~ 414 (1119)
.+++... ..+..+++|++|++++| +++..... ...+++|+.|++++ +.+++.....+. .+++|+.|.
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 5443211 12345556666666655 33221111 22355566665522 233322111121 244555555
Q ss_pred eecccccccCCcccc-CCCCcCEEEcc--C----ccCccc----chhhhhccCCccceeccccceeeCccCCcccccccc
Q 001226 415 LYNNRLTGRIPPDIT-RLRNLQFLSLA--H----NHLTGE----VALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNL 483 (1119)
Q Consensus 415 L~~N~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L 483 (1119)
++.|.+++..+..+. .+++|+.|+++ + |.+++. ....+...+++ |
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------------------------L 434 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD------------------------L 434 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT------------------------C
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC------------------------c
Confidence 555555443333332 24455555554 2 333311 01111223344 4
Q ss_pred ceeeccCccccCCCCccccc-cccccEEEeccCccccCCCccc-cCCCCcceeeccCcccCCCCCc-cccccccceEEec
Q 001226 484 FVLVLGNNRFNGSFPIEIGK-CSSLRRVILSNNLLQGSLPATL-ERNPGVSFLDVRGNLLQGSIPP-VFGFWSNLTMLDF 560 (1119)
Q Consensus 484 ~~L~L~~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~L~L 560 (1119)
+.|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|.+++..+. ....+++|++|++
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 4444433 333322233332 4455555555555443322222 3455555555555555322221 2334566777777
Q ss_pred cCCcccCCCCCcc-CCcccccEEEcccCcc
Q 001226 561 SENRLSGSIPSEL-GNLENLQILRLSANKL 589 (1119)
Q Consensus 561 s~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l 589 (1119)
++|+++..-...+ ..+++|+...+..+.-
T Consensus 514 ~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 514 SSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp ESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred eCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 7776643222223 3455666666555543
No 319
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=270.00 Aligned_cols=248 Identities=22% Similarity=0.204 Sum_probs=175.9
Q ss_pred CcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccC
Q 001226 314 LQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFN 393 (1119)
Q Consensus 314 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~ 393 (1119)
.+.++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345555555555 4554443 5677777777777766667777777777777777777766666777777777777777
Q ss_pred ccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCcc
Q 001226 394 NRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPI 473 (1119)
Q Consensus 394 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 473 (1119)
|+++...+..|..+++|++|+|++|+++...+..|.++++|+.|+|++|...+.++...+..+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l----------------- 184 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL----------------- 184 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-----------------
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc-----------------
Confidence 777766666677777777777777777766666677777777777777543334443333334
Q ss_pred CCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccc
Q 001226 474 PANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWS 553 (1119)
Q Consensus 474 p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~ 553 (1119)
++|+.|+|++|+++ .+| .+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+..|..++
T Consensus 185 -------~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 185 -------SNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp -------SSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred -------cccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 44444444444444 233 356677777777777777777777788888888888888888877777888888
Q ss_pred cceEEeccCCcccCCCCCccCCcccccEEEcccCccc
Q 001226 554 NLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLD 590 (1119)
Q Consensus 554 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 590 (1119)
+|++|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 8999999999998777778888999999999999886
No 320
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-27 Score=282.54 Aligned_cols=234 Identities=22% Similarity=0.199 Sum_probs=128.5
Q ss_pred ccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEecc
Q 001226 482 NLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFS 561 (1119)
Q Consensus 482 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls 561 (1119)
+|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++..| +..+++|++|+|++|.+++..+ .++|++|+|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 44444444444444444445555555555555555544333 4455555555555555543211 2455556666
Q ss_pred CCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhh-hcccCCeeEccCccCccC
Q 001226 562 ENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVI-SLEKMQSLSLQENNLSGA 640 (1119)
Q Consensus 562 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~ 640 (1119)
+|+|++..+.. +++|+.|+|++|++++..|..++.+++|+.|+|++|++++.+|..+. .+++|+.|+|++|.|++.
T Consensus 108 ~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 66555443332 34556666666666555555555566666666666666655555554 455666666666666544
Q ss_pred CCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceec-ccCCcccc
Q 001226 641 IPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFS-GEIPTEVN 719 (1119)
Q Consensus 641 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-g~ip~~~~ 719 (1119)
.+ +..+++|+.|+|++|.+++ +|..+..++.+ ..|++++|+|++ +|..++.+++|+.|++++|+++ +.+|..+.
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L-~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV-TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTC-SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCc-cEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 22 2235555555555555553 22234444333 235566666663 5666777777777777777776 66777777
Q ss_pred ccccceEEecc
Q 001226 720 NMVSLYFVNIS 730 (1119)
Q Consensus 720 ~~~~l~~l~ls 730 (1119)
.++.|..++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 77777776665
No 321
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=5.6e-29 Score=306.79 Aligned_cols=300 Identities=15% Similarity=0.143 Sum_probs=184.1
Q ss_pred cccCCCCCcEEEccCCccCCccC--------------hhhhhcCCCccEEEcCCCccCCCcchhhc-CCCCCceeeeccc
Q 001226 234 SLSNCRNLVEFSASSNNFGGAIS--------------PWIFKGLLQLEVLYLDDNNLEGQIPETLW-GLENLQKLVLSAN 298 (1119)
Q Consensus 234 ~l~~l~~L~~L~l~~n~i~~~~~--------------~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N 298 (1119)
.+..+++|++|+++++.....+. ...+..+++|++|+|++|.+++..+..+. .+++|++|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 35567778888888865322111 23345678888888888888877777775 6888888888888
Q ss_pred -ccccc-CcccccCCCCCcEEEccccccccccCcccC----CCCCCCeEEccCCc--ccCC-CCCCCCCCCCCcEEEccc
Q 001226 299 -KLNGT-ISGQISHCNQLQVIALSRNNLVGQIPRSVG----NLSSLNSLLLFNNR--LQGT-LPPELGNCGSLVDLRLQH 369 (1119)
Q Consensus 299 -~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~~L~~L~L~~N~--l~~~-~~~~l~~l~~L~~L~L~~ 369 (1119)
.++.. .+..+..+++|++|+|++|.+++..+..+. .+++|+.|++++|. ++.. ++..+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 55532 344455788888888888887765444443 56688888888886 2211 111123468888888888
Q ss_pred C-cCcccCchhhhcccccceeeccCc-------cccCCCCccccccCcceEE-EeecccccccCCccccCCCCcCEEEcc
Q 001226 370 N-FIGGTIPPEICNLAKLEVLYLFNN-------RIEGAIPHQIGRMSKLVEL-ALYNNRLTGRIPPDITRLRNLQFLSLA 440 (1119)
Q Consensus 370 N-~i~~~~~~~l~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~ 440 (1119)
| .++ .++..+..+++|+.|+++.+ .+.+ ++..+.++++|+.| .+.+... +.++..+..+++|+.|+|+
T Consensus 221 ~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 221 AVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp TSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECT
T ss_pred CCcHH-HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEcc
Confidence 7 344 36677778888888885443 3443 23356777778777 3333322 2344445567788888888
Q ss_pred CccCcccchhhhhccCCccceeccccceeeCccCCcc-ccccccceeecc---------CccccCCCCcccc-ccccccE
Q 001226 441 HNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANI-CVGTNLFVLVLG---------NNRFNGSFPIEIG-KCSSLRR 509 (1119)
Q Consensus 441 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~~L~~L~L~---------~N~l~~~~p~~~~-~l~~L~~ 509 (1119)
+|.+++.....+...+++|++|++++| +++.....+ ..+++|+.|+++ .+.+++.....+. .+++|+.
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 888776555555666778888888777 432211112 235667777662 3344432222222 3566666
Q ss_pred EEeccCccccCCCcccc-CCCCcceeecc
Q 001226 510 VILSNNLLQGSLPATLE-RNPGVSFLDVR 537 (1119)
Q Consensus 510 L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~ 537 (1119)
|.++.|.+++..+..+. .+++|+.|+++
T Consensus 377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 377 VLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp EEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 66666666544333332 35555555555
No 322
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.1e-27 Score=278.57 Aligned_cols=234 Identities=20% Similarity=0.195 Sum_probs=121.1
Q ss_pred ccceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceecc
Q 001226 385 KLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDL 464 (1119)
Q Consensus 385 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 464 (1119)
+|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.|++..+ .+.|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~------~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV------GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE------CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC------CCCcCEEEC
Confidence 45555555555555445555555555555555555554332 5555555555555555543211 134444444
Q ss_pred ccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCC
Q 001226 465 TGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGS 544 (1119)
Q Consensus 465 ~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 544 (1119)
++|.+++..+.. +++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.
T Consensus 107 ~~N~l~~~~~~~---------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 107 ANNNISRVSCSR---------------------------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp CSSCCCCEEECC---------------------------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred cCCcCCCCCccc---------------------------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 444444333321 23344444444444444444444444444444444444444
Q ss_pred CCcccc-ccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhh
Q 001226 545 IPPVFG-FWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVIS 623 (1119)
Q Consensus 545 ~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 623 (1119)
+|..+. .+++|++|+|++|.|++. |. +..+++|+.|+|++|++++ +|..+..+++|+.|||++|+|++ +|..+..
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~ 235 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred ChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhcc
Confidence 444443 455555555555555533 21 2235566666666666654 33335566666666666666653 5555666
Q ss_pred cccCCeeEccCccCc-cCCCccccccccccEeecC
Q 001226 624 LEKMQSLSLQENNLS-GAIPDAFSSVQSLFELQLG 657 (1119)
Q Consensus 624 l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~ 657 (1119)
+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 666666666666665 5556666666666666664
No 323
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=5.7e-25 Score=241.57 Aligned_cols=145 Identities=27% Similarity=0.273 Sum_probs=82.3
Q ss_pred CCCceeeeeeeecCCCceEEEecCCCcccccCccchhhhccCCcccEEEcCCCcccCCCCcccccCCCccEEEccccccc
Q 001226 54 SAPCKWSGVSCYNNSSSLKALNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQ 133 (1119)
Q Consensus 54 ~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~ 133 (1119)
.++|.|.|+.|.- .+.++.+++++.+++.++.. + .+++++|+|++|.+++..+..|+++++|++|+|++|+++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~~-~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTAIPSN-I-----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSSCCSC-C-----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCccCCC-C-----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC
Confidence 3689999999973 33456677777777654321 1 145666666666666555556666666666666666666
Q ss_pred ccCCccccccCccCEEEccCccccCCCCcccccccccceeeecccccccccCccCCCcccccEEEecccccc
Q 001226 134 GSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESIGFHNNFLNGELPNDICSLPKLKSLYLNTNNLT 205 (1119)
Q Consensus 134 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 205 (1119)
...+..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+++..+..|+.+++|++|++++|+++
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 433334455666666666666665444444444444444444444444444444444444444444444433
No 324
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=7.3e-25 Score=241.71 Aligned_cols=229 Identities=18% Similarity=0.203 Sum_probs=154.7
Q ss_pred eccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCccc
Q 001226 487 VLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLS 566 (1119)
Q Consensus 487 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 566 (1119)
+..+..++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|+++
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 33344444 3444433 35777777777777666666667777777777777776655566777777777777777777
Q ss_pred CCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcccccc-CChhhhhcccCCeeEccCccCccCCCccc
Q 001226 567 GSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGS-IPSEVISLEKMQSLSLQENNLSGAIPDAF 645 (1119)
Q Consensus 567 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 645 (1119)
+..|..|.++++|++|++++|++.+..+..+..+++|++|+|++|++++. +|..+..+++|++|+|++|++++..+..|
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 66667777777777777777777765555677777777777777777653 47777777777777777777776666666
Q ss_pred cccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecccCCccccccccce
Q 001226 646 SSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVNNMVSLY 725 (1119)
Q Consensus 646 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~l~ 725 (1119)
..+++|+.|++ .|++++|++++..+..+ ...+|+.|+|++|+|++..|..+..+++|+
T Consensus 170 ~~l~~L~~l~l---------------------~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 170 RVLHQMPLLNL---------------------SLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp HHHHTCTTCCE---------------------EEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred hhhhhccccce---------------------eeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhccccccc
Confidence 66666653221 26666666664434333 344788888888888855555567788888
Q ss_pred EEecccccccccCCC
Q 001226 726 FVNISFNHFSGKLPA 740 (1119)
Q Consensus 726 ~l~ls~N~~~g~~p~ 740 (1119)
.+++++|++++..|.
T Consensus 228 ~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 228 KIWLHTNPWDCSCPR 242 (276)
T ss_dssp EEECCSSCBCCCTTT
T ss_pred EEEccCCcccccCCc
Confidence 888888888887764
No 325
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.92 E-value=8.8e-27 Score=281.37 Aligned_cols=181 Identities=18% Similarity=0.153 Sum_probs=129.8
Q ss_pred eeecCCccEEEEEeCCCceEEEEEecccc--------------cccHHHHHHHHhhc-CCCCEEEEeeeeecCCceEEEE
Q 001226 842 IGKGKHGTVYRTLSNNSRKHWAVKKLNRS--------------ETNFDVEIRTLSLV-RHRNILRIVGSCTKDEHGFIVT 906 (1119)
Q Consensus 842 lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--------------~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~ 906 (1119)
.+.|++|.+..++....|+.||+|++... ..++.+|+++|+++ .|+||+++++++++++..|+||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 56667777776666666889999998532 13588999999999 6999999999999999999999
Q ss_pred eccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCC
Q 001226 907 EYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDS 986 (1119)
Q Consensus 907 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~ 986 (1119)
||++|++|.+++.+.++ ++.. +|+.||+.||+|+|++ |||||||||+|||++++|.+||+|||+|+.....
T Consensus 322 Eyv~G~~L~d~i~~~~~---l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 322 EKLPGRLLSDMLAAGEE---IDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp ECCCSEEHHHHHHTTCC---CCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred ecCCCCcHHHHHHhCCC---CCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 99999999999987653 5543 5899999999999999 9999999999999999999999999999876542
Q ss_pred CCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCC
Q 001226 987 HSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMP 1034 (1119)
Q Consensus 987 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p 1034 (1119)
. ......+||+.|+|||.+.+ .+..++|+||+|++.+++.++..|
T Consensus 393 ~--~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 393 C--SWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp ---CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred C--ccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 2 23345689999999998765 567889999999998887665443
No 326
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3.4e-25 Score=243.52 Aligned_cols=225 Identities=23% Similarity=0.282 Sum_probs=146.3
Q ss_pred cceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccC
Q 001226 483 LFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSE 562 (1119)
Q Consensus 483 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~ 562 (1119)
+..+++..+.+.+. .....+++|+.|++++|.+... ..+..+++|++|++++|++++ + ..+..+++|++|+|++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCC
Confidence 33444444444432 2244566666666666666532 235566666666666666654 2 3566667777777777
Q ss_pred CcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCC
Q 001226 563 NRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIP 642 (1119)
Q Consensus 563 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 642 (1119)
|++++..+..|+++++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..|
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 77776666666777777777777777776555566777777777777777776555556667777777777777776666
Q ss_pred ccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecccCCccccccc
Q 001226 643 DAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVNNMV 722 (1119)
Q Consensus 643 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 722 (1119)
..|+.+++|+.|+|+ +|++++..|..++.+++|+.|+|++|+++|..|
T Consensus 175 ~~~~~l~~L~~L~L~-------------------------~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------- 222 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLY-------------------------QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------- 222 (272)
T ss_dssp TTTTTCTTCCEEECC-------------------------SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------
T ss_pred HHhcCCccCCEEECC-------------------------CCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------
Confidence 666777766664444 444444555667777888888888888876544
Q ss_pred cceEEecccccccccCCCccccc
Q 001226 723 SLYFVNISFNHFSGKLPASWTTL 745 (1119)
Q Consensus 723 ~l~~l~ls~N~~~g~~p~~~~~~ 745 (1119)
.|++++++.|.++|.+|..++..
T Consensus 223 ~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHHHHHHHHHhCCCcccCccccc
Confidence 46777888888888888765544
No 327
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.6e-24 Score=239.09 Aligned_cols=209 Identities=24% Similarity=0.214 Sum_probs=174.4
Q ss_pred cccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEec
Q 001226 481 TNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDF 560 (1119)
Q Consensus 481 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~L 560 (1119)
.+|++|++++|++++..+..+.++++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46788888888888766668888888999999999888877788888999999999999998877788999999999999
Q ss_pred cCCcccCCCCCccCCcccccEEEcccCcccCc-CCcccccCCCCcEEeccCccccccCChhhhhcccCC----eeEccCc
Q 001226 561 SENRLSGSIPSELGNLENLQILRLSANKLDGR-IPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQ----SLSLQEN 635 (1119)
Q Consensus 561 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~L~~N 635 (1119)
++|++++..+..++++++|++|++++|++.+. +|..+..+++|++|+|++|++++..+..+..+.+|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999977777899999999999999999863 689999999999999999999988788888888888 8899999
Q ss_pred cCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecccCC
Q 001226 636 NLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIP 715 (1119)
Q Consensus 636 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip 715 (1119)
++++..+..+.. .+|++|+ +++|++++..+..|+.+++|+.|+|++|++++..|
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~-------------------------L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELA-------------------------LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEE-------------------------CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccCC-CcccEEE-------------------------CCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 998766555544 3666655 45555554555567889999999999999997654
No 328
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=7.4e-25 Score=240.85 Aligned_cols=229 Identities=23% Similarity=0.245 Sum_probs=184.1
Q ss_pred CccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeec
Q 001226 457 PYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDV 536 (1119)
Q Consensus 457 ~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 536 (1119)
..+..+++.++.+.+.. ....+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 34555666666554432 34566778888888888773 3 3578889999999999998863 47888999999999
Q ss_pred cCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcccccc
Q 001226 537 RGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGS 616 (1119)
Q Consensus 537 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 616 (1119)
++|++++..+..|..+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..+..+++|+.|+|++|++++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 99999987777889999999999999999987778899999999999999999977777789999999999999999987
Q ss_pred CChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCccccccc
Q 001226 617 IPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGN 696 (1119)
Q Consensus 617 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~ 696 (1119)
.|..+..+++|++|+|++|++++..|..|..+++|+.|+|++|.+.+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~------------------------------- 221 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC------------------------------- 221 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------------------------------
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------------------------------
Confidence 7777889999999999999999988888999999999888777665432
Q ss_pred ccccceeeccCceecccCCcccccccc
Q 001226 697 LDKLQILDLSSNSFSGEIPTEVNNMVS 723 (1119)
Q Consensus 697 l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 723 (1119)
++|+.|+++.|+++|.+|.+++.+..
T Consensus 222 -~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 222 -PGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -cHHHHHHHHHHhCCCcccCcccccCC
Confidence 34566666667777777766665543
No 329
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.8e-23 Score=228.11 Aligned_cols=203 Identities=26% Similarity=0.279 Sum_probs=153.7
Q ss_pred cceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccC
Q 001226 459 LSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRG 538 (1119)
Q Consensus 459 L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 538 (1119)
.+.+++++|.++ .+|..+. ++++.|++++|++++..+..+.++++|++|++++|.++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 344555555554 2343332 4677777777777766566777788888888888888766666677788888888888
Q ss_pred cccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCC
Q 001226 539 NLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIP 618 (1119)
Q Consensus 539 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 618 (1119)
|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++.+..+..|..+++|++|+|++|++++..|
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 88887666677788888888888888887777778888888888888888886555667888888888888888887666
Q ss_pred hhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCC
Q 001226 619 SEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGS 664 (1119)
Q Consensus 619 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 664 (1119)
..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 6778888888888888888877777788888888888888887643
No 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.9e-23 Score=231.31 Aligned_cols=177 Identities=25% Similarity=0.273 Sum_probs=79.6
Q ss_pred CcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEecc
Q 001226 530 GVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLS 609 (1119)
Q Consensus 530 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 609 (1119)
+++.|++++|++++..|..|..+++|++|+|++|+|++. |.. +.+++|++|+|++|++. .+|..+..+++|++|+|+
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 334444444444333333444444444444444444422 111 34444444444444444 344444444444444444
Q ss_pred CccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCC
Q 001226 610 DNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGK 689 (1119)
Q Consensus 610 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~ 689 (1119)
+|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++ ++.
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-------------------------~~l 163 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-------------------------TEL 163 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-------------------------SCC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC-------------------------Ccc
Confidence 4444443334444444444555555544444444444444444433333333 322
Q ss_pred cccccccccccceeeccCceecccCCccccccccceEEeccccccc
Q 001226 690 IPECLGNLDKLQILDLSSNSFSGEIPTEVNNMVSLYFVNISFNHFS 735 (1119)
Q Consensus 690 ~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~l~~l~ls~N~~~ 735 (1119)
.+..|..+++|+.|+|++|+|+ .+|..+..+.+|+.+++++|++.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 2233344455555555555554 44555555555555555555544
No 331
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3e-23 Score=229.84 Aligned_cols=153 Identities=27% Similarity=0.236 Sum_probs=82.3
Q ss_pred cccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcc
Q 001226 506 SLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLS 585 (1119)
Q Consensus 506 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 585 (1119)
+++.|+|++|.+++..|..|..+++|++|++++|++++..+ . +.+++|++|+|++|+|+ .+|..+.++++|++|+|+
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 44444555554444444444455555555555555443222 1 44555566666666555 455555556666666666
Q ss_pred cCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCccc
Q 001226 586 ANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIF 661 (1119)
Q Consensus 586 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 661 (1119)
+|++++..|..|..+++|++|+|++|++++..|..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 6666544445555666666666666666554444455556666666666666654444555555555544444443
No 332
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=2.9e-25 Score=255.05 Aligned_cols=260 Identities=17% Similarity=0.146 Sum_probs=123.6
Q ss_pred EEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCc----hhhhccc-ccceeeccCccccCCCCcccccc-----Ccc
Q 001226 341 LLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIP----PEICNLA-KLEVLYLFNNRIEGAIPHQIGRM-----SKL 410 (1119)
Q Consensus 341 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~----~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l-----~~L 410 (1119)
+.++.|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|++++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4455555555555444444455566666555554444 4444555 55555555555555544444443 555
Q ss_pred eEEEeecccccccCCccc----cCC-CCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCcccc-ccccc
Q 001226 411 VELALYNNRLTGRIPPDI----TRL-RNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICV-GTNLF 484 (1119)
Q Consensus 411 ~~L~L~~N~l~~~~~~~~----~~l-~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-~~~L~ 484 (1119)
++|+|++|++++..+..+ ..+ ++|+.|+|++|++++..+..+... +.. .++|+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~---------------------l~~~~~~L~ 141 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA---------------------FSNLPASIT 141 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH---------------------HTTSCTTCC
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH---------------------HHhCCCcee
Confidence 555555555554433322 222 455555555555543333222211 001 13444
Q ss_pred eeeccCccccCCCC----ccccccc-cccEEEeccCccccCCCcccc----CC-CCcceeeccCcccCCC----CCcccc
Q 001226 485 VLVLGNNRFNGSFP----IEIGKCS-SLRRVILSNNLLQGSLPATLE----RN-PGVSFLDVRGNLLQGS----IPPVFG 550 (1119)
Q Consensus 485 ~L~L~~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~l~~N~l~~~----~p~~~~ 550 (1119)
+|+|++|++++..+ ..+..++ +|++|+|++|++++..+..+. .. ++|+.|||++|++++. ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 44444444443222 2222333 555555555555544433222 22 3555555555555431 233333
Q ss_pred c-cccceEEeccCCcccCCCC----CccCCcccccEEEcccCcccCc-------CCcccccCCCCcEEeccCccccccCC
Q 001226 551 F-WSNLTMLDFSENRLSGSIP----SELGNLENLQILRLSANKLDGR-------IPYELGKCTKMIKLDLSDNYLAGSIP 618 (1119)
Q Consensus 551 ~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~Ls~N~l~~~~p 618 (1119)
. .++|++|||++|++++..+ ..+..+++|+.|+|++|++.+. ++..+..+++|+.|||++|++.+..|
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 3 2356666666666654322 2334556666666666664321 22344555666666666666655444
Q ss_pred hhh
Q 001226 619 SEV 621 (1119)
Q Consensus 619 ~~~ 621 (1119)
..+
T Consensus 302 ~~~ 304 (362)
T 3goz_A 302 IPI 304 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 333
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.2e-24 Score=247.55 Aligned_cols=236 Identities=15% Similarity=0.136 Sum_probs=138.7
Q ss_pred CceeeeeeeecCCCceEEEecCCCcccccCccchhhhccC--CcccEEEcCCCcccCCCCcccccCCCccEEEccccccc
Q 001226 56 PCKWSGVSCYNNSSSLKALNLSGFGLSGVLNNSISYICKN--QHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQ 133 (1119)
Q Consensus 56 ~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~~~~l--~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~ 133 (1119)
|.+|.++.|+. ..++.++++++.+.. ..+..+ ++++.|++++|.+++..+. +..+++|++|+|++|.++
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~~------~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLHP------DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCCH------HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC
T ss_pred HHHHHHHhcCc--hhheeeccccccCCH------HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC
Confidence 66899998864 357788888776652 123344 6778888888887765554 556777888888887777
Q ss_pred cc-CCccccccCccCEEEccCccccCCCCcccccccccceeeeccc-ccccc-cCccCCCcccccEEEeccc-cccccCC
Q 001226 134 GS-IPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESIGFHNN-FLNGE-LPNDICSLPKLKSLYLNTN-NLTGLLP 209 (1119)
Q Consensus 134 ~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~~ 209 (1119)
+. +|..+..+++|++|+|++|.+++..|..++.+++|++|++++| .+++. .+..+..+++|++|++++| ++++.
T Consensus 107 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-- 184 (336)
T 2ast_B 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-- 184 (336)
T ss_dssp HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--
T ss_pred HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--
Confidence 65 6667777777777777777777666666666666777766666 45542 4444555666666666666 55421
Q ss_pred CCCccccceeeeeeccccccCccccccCCC-CCcEEEccCC--ccCCccChhhhhcCCCccEEEcCCCc-cCCCcchhhc
Q 001226 210 EFPNSCAILHLLIHENDFVGSLPTSLSNCR-NLVEFSASSN--NFGGAISPWIFKGLLQLEVLYLDDNN-LEGQIPETLW 285 (1119)
Q Consensus 210 ~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~-~L~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~ 285 (1119)
.++..+.+++ +|++|++++| .+++...+..+..+++|++|++++|. +++..+..+.
T Consensus 185 --------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 185 --------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp --------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred --------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 1233444555 5555555555 33322223344455555555555555 4444444555
Q ss_pred CCCCCceeeecccc-ccccCcccccCCCCCcEEEcccc
Q 001226 286 GLENLQKLVLSANK-LNGTISGQISHCNQLQVIALSRN 322 (1119)
Q Consensus 286 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N 322 (1119)
.+++|++|++++|. +.......+..+++|++|++++|
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 55555555555552 22111123444444444444444
No 334
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.5e-24 Score=248.96 Aligned_cols=258 Identities=20% Similarity=0.183 Sum_probs=128.1
Q ss_pred eccccceeeCccCCccccccccceeeccCccccCCCC----ccccccc-cccEEEeccCccccCCCccccCC-----CCc
Q 001226 462 LDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFP----IEIGKCS-SLRRVILSNNLLQGSLPATLERN-----PGV 531 (1119)
Q Consensus 462 L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L 531 (1119)
++++.|.+++.+|..+....+|++|+|++|++++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4556666666666555555556666666666654444 4445555 56666666666655544444443 555
Q ss_pred ceeeccCcccCCCCCcccccc-----ccceEEeccCCcccCCCCCccCC-----cccccEEEcccCcccCcC----Cccc
Q 001226 532 SFLDVRGNLLQGSIPPVFGFW-----SNLTMLDFSENRLSGSIPSELGN-----LENLQILRLSANKLDGRI----PYEL 597 (1119)
Q Consensus 532 ~~L~l~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~----p~~~ 597 (1119)
++|++++|++++..+..+... ++|++|+|++|+|++..+..+.. .++|++|+|++|++.+.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 555555555554443322222 45555555555554433333221 134555555555554221 1222
Q ss_pred ccCC-CCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCcccccc-ccccEeecCCcccCCC----ccccchh
Q 001226 598 GKCT-KMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSV-QSLFELQLGSNIFDGS----IPCSLSK 671 (1119)
Q Consensus 598 ~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~----~p~~~~~ 671 (1119)
..++ +|++|+|++|++++..+..+... +..+ ++|++|+|++|.+++. ++..+..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKF--------------------LASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHH--------------------HHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 2332 45555555555544444333322 1111 3444444444444431 2222322
Q ss_pred hccccceeeeccccccCCcc----cccccccccceeeccCceecc-------cCCccccccccceEEecccccccccCC
Q 001226 672 LHHFSSILNVSNNKLSGKIP----ECLGNLDKLQILDLSSNSFSG-------EIPTEVNNMVSLYFVNISFNHFSGKLP 739 (1119)
Q Consensus 672 l~~~~~~L~ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~g-------~ip~~~~~~~~l~~l~ls~N~~~g~~p 739 (1119)
...-++.|++++|++++..+ ..+..+++|+.|+|++|++++ .++..+..+++|+.+|+++|++.+..|
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 22223345555555554333 234556777777887777442 233345667778888888887776644
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=233.90 Aligned_cols=224 Identities=18% Similarity=0.203 Sum_probs=161.0
Q ss_pred CcCEEEccCccCcccchhhhh--ccCCccceeccccceeeCccCCcc--ccccccceeeccCccccCCCC----cccccc
Q 001226 433 NLQFLSLAHNHLTGEVALELG--KHFPYLSRLDLTGNSFYGPIPANI--CVGTNLFVLVLGNNRFNGSFP----IEIGKC 504 (1119)
Q Consensus 433 ~L~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p~~~--~~~~~L~~L~L~~N~l~~~~p----~~~~~l 504 (1119)
.++.+.+.++.++......+. ..++.|++|++++|.+++..|..+ ..+++|++|+|++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666766666532222111 124568888888888887777777 777888888888888876555 344567
Q ss_pred ccccEEEeccCccccCCCccccCCCCcceeeccCcccCCC--C--CccccccccceEEeccCCcccCCCCC----ccCCc
Q 001226 505 SSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGS--I--PPVFGFWSNLTMLDFSENRLSGSIPS----ELGNL 576 (1119)
Q Consensus 505 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l 576 (1119)
++|++|+|++|++.+..|..+..+++|++|++++|++.+. + +..++.+++|++|+|++|+++ .+|. .++++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 8888888888888877778888888888888888887642 2 223467778888888888886 3333 24677
Q ss_pred ccccEEEcccCcccCcCCcccccC---CCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccE
Q 001226 577 ENLQILRLSANKLDGRIPYELGKC---TKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFE 653 (1119)
Q Consensus 577 ~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 653 (1119)
++|++|+|++|++.+..|..+..+ ++|++|+|++|+|+ .+|..+. ++|+.|+|++|+|++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 888888888888887767777666 58888888888887 5676664 6888888888888853 43 677788888
Q ss_pred eecCCcccC
Q 001226 654 LQLGSNIFD 662 (1119)
Q Consensus 654 L~L~~N~l~ 662 (1119)
|+|++|+++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 787777775
No 336
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5.7e-25 Score=255.17 Aligned_cols=240 Identities=19% Similarity=0.252 Sum_probs=144.8
Q ss_pred ccccccccccEEEeccCccccCCC----ccccCCCCcceeeccCc---ccCCCCCccc-------cccccceEEeccCCc
Q 001226 499 IEIGKCSSLRRVILSNNLLQGSLP----ATLERNPGVSFLDVRGN---LLQGSIPPVF-------GFWSNLTMLDFSENR 564 (1119)
Q Consensus 499 ~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~l~~N---~l~~~~p~~~-------~~l~~L~~L~Ls~N~ 564 (1119)
..+..+++|+.|+|++|.+.+..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|+
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 334444444444444444443211 22334444444444443 2223333332 455666666666666
Q ss_pred ccC----CCCCccCCcccccEEEcccCcccCcCCcc----cccC---------CCCcEEeccCcccc-ccCC---hhhhh
Q 001226 565 LSG----SIPSELGNLENLQILRLSANKLDGRIPYE----LGKC---------TKMIKLDLSDNYLA-GSIP---SEVIS 623 (1119)
Q Consensus 565 l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l---------~~L~~L~Ls~N~l~-~~~p---~~~~~ 623 (1119)
+++ .+|..+.++++|++|+|++|++.+..+.. +..+ ++|++|+|++|+++ +.+| ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 654 35555566666666666666664322222 2222 66666666666665 2334 34555
Q ss_pred cccCCeeEccCccCc--c---CCCccccccccccEeecCCcccC----CCccccchhhccccceeeeccccccCC----c
Q 001226 624 LEKMQSLSLQENNLS--G---AIPDAFSSVQSLFELQLGSNIFD----GSIPCSLSKLHHFSSILNVSNNKLSGK----I 690 (1119)
Q Consensus 624 l~~L~~L~L~~N~l~--~---~~p~~~~~l~~L~~L~L~~N~l~----~~~p~~~~~l~~~~~~L~ls~N~l~~~----~ 690 (1119)
+++|++|+|++|+++ | .+|..+..+++|+.|+|++|.++ +.+|..+..++.+. .|+|++|++++. +
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR-ELGLNDCLLSARGAAAV 264 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC-EEECTTCCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC-EEECCCCCCchhhHHHH
Confidence 666666666666665 2 34446666666777777776664 45566555555543 477777777655 5
Q ss_pred cccc--ccccccceeeccCceecc----cCCccc-cccccceEEecccccccccCC
Q 001226 691 PECL--GNLDKLQILDLSSNSFSG----EIPTEV-NNMVSLYFVNISFNHFSGKLP 739 (1119)
Q Consensus 691 p~~~--~~l~~L~~L~Ls~N~l~g----~ip~~~-~~~~~l~~l~ls~N~~~g~~p 739 (1119)
|..+ +.+++|+.|+|++|+|++ .+|..+ .++++|+.|++++|++++..|
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 6677 448999999999999998 589888 668999999999999997665
No 337
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=3.6e-23 Score=232.15 Aligned_cols=201 Identities=20% Similarity=0.219 Sum_probs=140.1
Q ss_pred cccccEEEeccCccccCCCccc--cCCCCcceeeccCcccCCCCC----ccccccccceEEeccCCcccCCCCCccCCcc
Q 001226 504 CSSLRRVILSNNLLQGSLPATL--ERNPGVSFLDVRGNLLQGSIP----PVFGFWSNLTMLDFSENRLSGSIPSELGNLE 577 (1119)
Q Consensus 504 l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~l~~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 577 (1119)
+++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+ ..+..+++|++|+|++|++++..|..|++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4567777777777777777766 777777777777777776554 3345678888888888888877778888888
Q ss_pred cccEEEcccCcccCc--C--CcccccCCCCcEEeccCccccccCCh----hhhhcccCCeeEccCccCccCCCcccccc-
Q 001226 578 NLQILRLSANKLDGR--I--PYELGKCTKMIKLDLSDNYLAGSIPS----EVISLEKMQSLSLQENNLSGAIPDAFSSV- 648 (1119)
Q Consensus 578 ~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~~~~l- 648 (1119)
+|++|+|++|++.+. + +..+..+++|++|+|++|+++. +|. .+..+++|++|+|++|++++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 888888888887642 2 2344678888888888888863 343 24677888888888888888778777776
Q ss_pred --ccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecccCCccccccccceE
Q 001226 649 --QSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVNNMVSLYF 726 (1119)
Q Consensus 649 --~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~l~~ 726 (1119)
++|++|+|++|+++ .+ |..+. ++|+.|||++|+|++. |. +..+++|+.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~l-------------------------p~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QV-------------------------PKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCTTCCCEECCSSCCC-SC-------------------------CSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CcCcCCEEECCCCCCC-ch-------------------------hhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 47777666666655 33 43332 4566666666666542 22 345556666
Q ss_pred Eeccccccc
Q 001226 727 VNISFNHFS 735 (1119)
Q Consensus 727 l~ls~N~~~ 735 (1119)
|++++|+++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 666666654
No 338
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.2e-22 Score=218.36 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=49.0
Q ss_pred CCceeeeeeeecCCCceEEEecCCCcccccCccchhhhccCCcccEEEcCCCcccCCCCcccccCCCccEEEcccccccc
Q 001226 55 APCKWSGVSCYNNSSSLKALNLSGFGLSGVLNNSISYICKNQHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDNRFQG 134 (1119)
Q Consensus 55 ~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~~~~l~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 134 (1119)
+||.|.|++|.. ..+.+++++.+++..+... .+++++|+|++|.+++..+..++++++|++|+|++|++++
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~p~~~------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 73 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDSVPSGI------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSSCCSCC------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccccCCCC------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc
Confidence 589999999964 2335666666665443211 1345555555555554444445555555555555555444
Q ss_pred cCCccccccCccCEEEccCcccc
Q 001226 135 SIPPEIFKLKRLSWLDLGYNSLS 157 (1119)
Q Consensus 135 ~~p~~l~~l~~L~~L~Ls~n~l~ 157 (1119)
..|..+..+++|++|+|++|.++
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCC
T ss_pred cCHhHhccCCcCCEEECCCCccc
Confidence 44444444444444444444444
No 339
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=3.1e-22 Score=217.12 Aligned_cols=180 Identities=24% Similarity=0.247 Sum_probs=147.2
Q ss_pred ccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEecc
Q 001226 482 NLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFS 561 (1119)
Q Consensus 482 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls 561 (1119)
+.+.++++++.++ .+|..+. ++|+.|+|++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666777666 5555554 577888888888887777778888888888888888887777778888888888888
Q ss_pred CCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCC
Q 001226 562 ENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAI 641 (1119)
Q Consensus 562 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 641 (1119)
+|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|+|++..|..+..+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 88888777778888889999999999988666667788899999999999998766667888889999999999999888
Q ss_pred CccccccccccEeecCCcccCCC
Q 001226 642 PDAFSSVQSLFELQLGSNIFDGS 664 (1119)
Q Consensus 642 p~~~~~l~~L~~L~L~~N~l~~~ 664 (1119)
|..|..+++|+.|+|++|++++.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 88888999999999999988765
No 340
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.88 E-value=3.4e-24 Score=257.34 Aligned_cols=181 Identities=20% Similarity=0.220 Sum_probs=141.7
Q ss_pred hCCceeeecCCccEEEEEeCCCceEEEEEecccc------------cccHHHHHHHHhhcCCCCEEEEeeeeecCCceEE
Q 001226 837 TEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS------------ETNFDVEIRTLSLVRHRNILRIVGSCTKDEHGFI 904 (1119)
Q Consensus 837 ~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 904 (1119)
...++||+|+||.||+|... ++.+++|+.... ...+.+|++++++++||||+++..++..++..|+
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~--~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~l 416 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYL--DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRI 416 (540)
T ss_dssp ---------CCEEEEEEECS--SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEE
T ss_pred CCCCEEeeCCCEEEEEEEEC--CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEE
Confidence 34578999999999999443 678889875321 1236899999999999999966555567777899
Q ss_pred EEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEecccccccc
Q 001226 905 VTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLIS 984 (1119)
Q Consensus 905 V~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~ 984 (1119)
||||+++++|.+++.. +..++.|+++|++|||++ +|+||||||+||+++. .+||+|||+++...
T Consensus 417 VmE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~ 480 (540)
T 3en9_A 417 MMSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISN 480 (540)
T ss_dssp EEECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECC
T ss_pred EEECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECC
Confidence 9999999999999876 457999999999999999 9999999999999999 99999999998775
Q ss_pred CCCCCC-----cccccccCCCcccccccCC--CCCCCcchHHHHHHHHHHHHhCCCCC
Q 001226 985 DSHSSS-----TRSAIVGSLGYIAPENAYS--TRLTEKSDVYSYGVILFELLFRKMPV 1035 (1119)
Q Consensus 985 ~~~~~~-----~~~~~~gt~~y~aPE~~~~--~~~~~~sDvwslG~vl~elltg~~p~ 1035 (1119)
...... ......||+.|+|||++.. ..|+...|+|+..+-..+-+.++.+|
T Consensus 481 ~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY 538 (540)
T 3en9_A 481 LDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY 538 (540)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred CccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 422111 1235679999999998876 56778889999999998888877665
No 341
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.6e-22 Score=226.32 Aligned_cols=173 Identities=23% Similarity=0.368 Sum_probs=104.7
Q ss_pred cccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccce
Q 001226 477 ICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLT 556 (1119)
Q Consensus 477 ~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~ 556 (1119)
+..+++|+.|++++|++++..+ +..+++|++|++++|++++. ..+..+++|+.|++++|++++. +. +..+++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~ 132 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQ 132 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCC
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCC
Confidence 4445555555555555553222 55566666666666665542 2455666666666666666542 22 56666677
Q ss_pred EEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCcc
Q 001226 557 MLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENN 636 (1119)
Q Consensus 557 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 636 (1119)
+|+|++|++++..+ +.++++|+.|+|++|++++ ++. +..+++|+.|+|++|++++..| +..+++|++|+|++|+
T Consensus 133 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 133 VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred EEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence 77777776664332 6666677777777777664 333 6666777777777777764322 6666777777777777
Q ss_pred CccCCCccccccccccEeecCCcccCC
Q 001226 637 LSGAIPDAFSSVQSLFELQLGSNIFDG 663 (1119)
Q Consensus 637 l~~~~p~~~~~l~~L~~L~L~~N~l~~ 663 (1119)
+++..| +..+++|+.|+|++|.+++
T Consensus 207 l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 207 ISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcccc--ccCCCCCCEEEccCCeeec
Confidence 765432 6667777777777776653
No 342
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.4e-24 Score=251.80 Aligned_cols=277 Identities=19% Similarity=0.188 Sum_probs=157.2
Q ss_pred EEccCccccCCCCcccccccccceeeecccccccccCc----cCCCcccccEEEeccccccccCCCCCccccceeeeeec
Q 001226 149 LDLGYNSLSGKIPPQVSLCYSLESIGFHNNFLNGELPN----DICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHE 224 (1119)
Q Consensus 149 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~ 224 (1119)
..++...+. .++..+..+++|++|+|++|.+++..+. .+..+++|++|+|++|.+..
T Consensus 14 ~~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~------------------ 74 (386)
T 2ca6_A 14 DAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR------------------ 74 (386)
T ss_dssp SSCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS------------------
T ss_pred CCCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc------------------
Confidence 333433433 4556667777777777777777765433 35567777777777764431
Q ss_pred cccccCccccccCCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCC----CcchhhcCCCCCceeeeccccc
Q 001226 225 NDFVGSLPTSLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEG----QIPETLWGLENLQKLVLSANKL 300 (1119)
Q Consensus 225 n~~~~~lp~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l 300 (1119)
+.+.+|..+.. ....+..+++|++|+|++|++++ .+|..+..+++|++|+|++|.+
T Consensus 75 --l~~~~~~~~~~------------------l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 75 --VKDEIPEALRL------------------LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp --CGGGSHHHHHH------------------HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred --cccchhHHHHH------------------HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 11122222210 01123344455555555555544 2444555555555555555555
Q ss_pred cccCccccc----CC---------CCCcEEEccccccc-cccC---cccCCCCCCCeEEccCCcccC-----CCCCCCCC
Q 001226 301 NGTISGQIS----HC---------NQLQVIALSRNNLV-GQIP---RSVGNLSSLNSLLLFNNRLQG-----TLPPELGN 358 (1119)
Q Consensus 301 ~~~~~~~~~----~l---------~~L~~L~Ls~N~l~-~~~~---~~~~~l~~L~~L~L~~N~l~~-----~~~~~l~~ 358 (1119)
++..+..+. .+ ++|++|+|++|+++ +.++ ..+..+++|++|++++|+++. ..+..+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 433222222 22 56666666666665 2233 345566677777777776652 23336667
Q ss_pred CCCCcEEEcccCcCc----ccCchhhhcccccceeeccCccccCC----CCccc--cccCcceEEEeecccccc----cC
Q 001226 359 CGSLVDLRLQHNFIG----GTIPPEICNLAKLEVLYLFNNRIEGA----IPHQI--GRMSKLVELALYNNRLTG----RI 424 (1119)
Q Consensus 359 l~~L~~L~L~~N~i~----~~~~~~l~~l~~L~~L~L~~N~l~~~----~~~~~--~~l~~L~~L~L~~N~l~~----~~ 424 (1119)
+++|++|+|++|.++ ..+|..+..+++|+.|+|++|++++. ++..+ +.+++|+.|+|++|++++ .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 777777777777775 45566677777777777777777654 34444 236777777777777765 35
Q ss_pred Cccc-cCCCCcCEEEccCccCcccch--hhhhccCCccceecc
Q 001226 425 PPDI-TRLRNLQFLSLAHNHLTGEVA--LELGKHFPYLSRLDL 464 (1119)
Q Consensus 425 ~~~~-~~l~~L~~L~L~~N~l~~~~~--~~~~~~l~~L~~L~L 464 (1119)
|..+ .++++|++|++++|++++..+ ..+...++.++.+++
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 5555 456777777777777776553 444444555544444
No 343
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1e-22 Score=219.29 Aligned_cols=196 Identities=17% Similarity=0.168 Sum_probs=118.3
Q ss_pred CcceeeccCcccCCCCCccccccccceEEeccCCc-ccCCCCCccCCcccccEEEccc-CcccCcCCcccccCCCCcEEe
Q 001226 530 GVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENR-LSGSIPSELGNLENLQILRLSA-NKLDGRIPYELGKCTKMIKLD 607 (1119)
Q Consensus 530 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ 607 (1119)
+++.|++++|++++..+..|..+++|++|+|++|+ +++..+..|.++++|++|+|++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444444334445555555555555554 5444444555555666666655 555544445555566666666
Q ss_pred ccCccccccCChhhhhcccCC---eeEccCc-cCccCCCcccccccccc-EeecCCcccCCCccccchhhccccceeeec
Q 001226 608 LSDNYLAGSIPSEVISLEKMQ---SLSLQEN-NLSGAIPDAFSSVQSLF-ELQLGSNIFDGSIPCSLSKLHHFSSILNVS 682 (1119)
Q Consensus 608 Ls~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls 682 (1119)
+++|++++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ +|++++|.++ .+|...+.... ++.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~-L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTK-LDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCE-EEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCC-CCEEEcC
Confidence 66666654 444 55555555 6666666 66655555566666666 6666666665 55554444432 3457777
Q ss_pred ccc-ccCCcccccccc-cccceeeccCceecccCCccccccccceEEecccc
Q 001226 683 NNK-LSGKIPECLGNL-DKLQILDLSSNSFSGEIPTEVNNMVSLYFVNISFN 732 (1119)
Q Consensus 683 ~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~l~~l~ls~N 732 (1119)
+|+ +++..+..|..+ ++|+.|||++|+|+ .+|+. .+.+|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 774 775556778888 89999999999998 56655 6778888888776
No 344
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.1e-23 Score=239.72 Aligned_cols=256 Identities=18% Similarity=0.209 Sum_probs=151.9
Q ss_pred cccEEEcCCCcccCCCCcccccC--CCccEEEcccccccccCCccccccCccCEEEccCccccCC-CCccccccccccee
Q 001226 97 HLLSLDLSGNEFTGSIPKQLGNC--GQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGK-IPPQVSLCYSLESI 173 (1119)
Q Consensus 97 ~l~~L~Ls~n~~~~~~~~~l~~l--~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L 173 (1119)
.++.||++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566777766655 4455555 6666777776666654433 45566666666666666543 45555555556666
Q ss_pred eecccccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCC
Q 001226 174 GFHNNFLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGG 253 (1119)
Q Consensus 174 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~ 253 (1119)
++++|.+++..+..++.+++|++|++++|. .+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~----------------------------------------------~l~~ 157 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCS----------------------------------------------GFSE 157 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCB----------------------------------------------SCCH
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCC----------------------------------------------CCCH
Confidence 665555555555555555555555555551 2332
Q ss_pred ccChhhhhcCCCccEEEcCCC-ccCCC-cchhhcCCC-CCceeeeccc--ccc-ccCcccccCCCCCcEEEccccc-ccc
Q 001226 254 AISPWIFKGLLQLEVLYLDDN-NLEGQ-IPETLWGLE-NLQKLVLSAN--KLN-GTISGQISHCNQLQVIALSRNN-LVG 326 (1119)
Q Consensus 254 ~~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~Ls~N--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~ 326 (1119)
...+..+.++++|++|++++| .+++. ++..+..++ +|++|++++| .++ +..+..+..+++|++|++++|. +++
T Consensus 158 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 158 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 222334455555666666665 55543 345555666 6666666666 333 2344455666667777777666 555
Q ss_pred ccCcccCCCCCCCeEEccCCc-ccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcc-cccceeeccCccccCCCCccc
Q 001226 327 QIPRSVGNLSSLNSLLLFNNR-LQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNL-AKLEVLYLFNNRIEGAIPHQI 404 (1119)
Q Consensus 327 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~ 404 (1119)
..+..+..+++|++|++++|. ++......++++++|++|++++| ++. ..+..+ ..|+.|++++|++++..|..+
T Consensus 238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 238 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcc
Confidence 556667777777777777774 33222235667788888888877 432 234444 347777788888888888766
Q ss_pred cc
Q 001226 405 GR 406 (1119)
Q Consensus 405 ~~ 406 (1119)
+.
T Consensus 314 ~~ 315 (336)
T 2ast_B 314 GN 315 (336)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 345
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=6.4e-22 Score=221.39 Aligned_cols=192 Identities=19% Similarity=0.321 Sum_probs=89.5
Q ss_pred cccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEE
Q 001226 504 CSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILR 583 (1119)
Q Consensus 504 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 583 (1119)
+++|++|++++|.+.. +| .+..+++|+.|++++|++++..+ +..+++|++|+|++|++++ +| .+.++++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 3444444444444432 12 23444444444444444443222 4444444455555444442 22 344445555555
Q ss_pred cccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCC
Q 001226 584 LSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDG 663 (1119)
Q Consensus 584 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 663 (1119)
|++|++++ +|. +..+++|++|+|++|++++..+ +..+++|+.|+|++|++++..+ +..+++|+.|+|++|.+++
T Consensus 114 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 55555542 222 4445555555555555543222 4444555555555555543222 4455555555555554443
Q ss_pred CccccchhhccccceeeeccccccCCcccccccccccceeeccCceecc
Q 001226 664 SIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSG 712 (1119)
Q Consensus 664 ~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 712 (1119)
..| +..++.+ +.|++++|++++..| +..+++|+.|+|++|++++
T Consensus 188 ~~~--l~~l~~L-~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNL-IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTC-CEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCC-CEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 222 3333332 235555555554332 6667777777777777764
No 346
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=9.1e-22 Score=211.81 Aligned_cols=194 Identities=15% Similarity=0.114 Sum_probs=113.8
Q ss_pred ceeccccceeeCccCCccccccccceeeccCcc-ccCCCCccccccccccEEEecc-CccccCCCccccCCCCcceeecc
Q 001226 460 SRLDLTGNSFYGPIPANICVGTNLFVLVLGNNR-FNGSFPIEIGKCSSLRRVILSN-NLLQGSLPATLERNPGVSFLDVR 537 (1119)
Q Consensus 460 ~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~ 537 (1119)
++|++++|++++..+..+..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|+++
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 333333333333333344445555555555554 5444444556666666666665 66665555566666666666666
Q ss_pred CcccCCCCCccccccccce---EEeccCC-cccCCCCCccCCccccc-EEEcccCcccCcCCcccccCCCCcEEeccCcc
Q 001226 538 GNLLQGSIPPVFGFWSNLT---MLDFSEN-RLSGSIPSELGNLENLQ-ILRLSANKLDGRIPYELGKCTKMIKLDLSDNY 612 (1119)
Q Consensus 538 ~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 612 (1119)
+|++++ +|. |..+++|+ +|++++| ++++..+..|.++++|+ .|++++|+++ .+|......++|+.|+|++|+
T Consensus 114 ~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 114 NTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp EECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCT
T ss_pred CCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCC
Confidence 666664 444 55566665 7777777 66655555667777777 7777777776 444433333677777777774
Q ss_pred -ccccCChhhhhc-ccCCeeEccCccCccCCCccccccccccEeecCCc
Q 001226 613 -LAGSIPSEVISL-EKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSN 659 (1119)
Q Consensus 613 -l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 659 (1119)
+++..+..+..+ ++|+.|+|++|++++. |.. .+++|+.|+++++
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 665555566666 6777777777777643 332 4555666666554
No 347
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.7e-21 Score=233.58 Aligned_cols=192 Identities=26% Similarity=0.424 Sum_probs=105.7
Q ss_pred cccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcc
Q 001226 506 SLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLS 585 (1119)
Q Consensus 506 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 585 (1119)
+|+.|+|++|.+++ +|..+ .++|++|+|++|+++ .+| ..+++|++|+|++|+|++ +|. +.+ +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44444444444443 33322 144555555555554 344 234555666666666654 444 443 56666666
Q ss_pred cCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCc
Q 001226 586 ANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSI 665 (1119)
Q Consensus 586 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 665 (1119)
+|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|+.|+|++|+|++ +|. |. ++|+.|+|++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 666654 444 35566666666666654 443 34556666666666664 444 44 56666666666555 44
Q ss_pred cccchh-h---ccccceeeeccccccCCcccccccccccceeeccCceecccCCcccccccc
Q 001226 666 PCSLSK-L---HHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEVNNMVS 723 (1119)
Q Consensus 666 p~~~~~-l---~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 723 (1119)
|. +.. + ...+..|+|++|+|+ .+|..+..+++|+.|+|++|+|+|.+|..+..+..
T Consensus 196 p~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 44 222 0 000144667777776 56777777777777777777777777777766544
No 348
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=4e-21 Score=219.29 Aligned_cols=243 Identities=18% Similarity=0.181 Sum_probs=138.7
Q ss_pred ceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCc-cccccccceE-Eecc
Q 001226 484 FVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPP-VFGFWSNLTM-LDFS 561 (1119)
Q Consensus 484 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~L~~-L~Ls 561 (1119)
+.++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|. .|..++++.+ ++++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555556665 455444 24566666666666655455666666666666666666554443 4555655443 5555
Q ss_pred CCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccC-ccccccCChhhhhcc-cCCeeEccCccCcc
Q 001226 562 ENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSD-NYLAGSIPSEVISLE-KMQSLSLQENNLSG 639 (1119)
Q Consensus 562 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~ 639 (1119)
.|+|++..|..|.++++|++|++++|++.+..+..+....++..|++++ |++....+..+..+. .++.|+|++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6666655566666666777777777776655555555666666666654 455544444455443 46666777777664
Q ss_pred CCCccccccccccEeecCCcccCCCccccc-hhhccccceeeeccccccCCcccccccccccceeeccCceecccCCccc
Q 001226 640 AIPDAFSSVQSLFELQLGSNIFDGSIPCSL-SKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGEIPTEV 718 (1119)
Q Consensus 640 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~ 718 (1119)
+|.......+|++|++++|+..+.+|... ..+..+ +.|++++|+|+...+..|.+|++|+.+++ ++++ .+|+ +
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L-~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP~-l 242 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP-VILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT-L 242 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC-SEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCCC-T
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCccc-chhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCCC-c
Confidence 33333344566666666544444555433 334433 34667777776433344555555544433 3343 6663 6
Q ss_pred cccccceEEeccccccc
Q 001226 719 NNMVSLYFVNISFNHFS 735 (1119)
Q Consensus 719 ~~~~~l~~l~ls~N~~~ 735 (1119)
.++++|+.++++++.-.
T Consensus 243 ~~l~~L~~l~l~~~~~c 259 (350)
T 4ay9_X 243 EKLVALMEASLTYPSHC 259 (350)
T ss_dssp TTCCSCCEEECSCHHHH
T ss_pred hhCcChhhCcCCCCccc
Confidence 77777777777766544
No 349
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=7.5e-21 Score=217.04 Aligned_cols=239 Identities=16% Similarity=0.178 Sum_probs=115.5
Q ss_pred eeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccce-ecccc
Q 001226 388 VLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSR-LDLTG 466 (1119)
Q Consensus 388 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~-L~L~~ 466 (1119)
+++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.++...+..++++.+ +.+++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4455555555 333333 2355666666666664334456666666666666666554455444444444332 33333
Q ss_pred ceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccC-cccCCCC
Q 001226 467 NSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRG-NLLQGSI 545 (1119)
Q Consensus 467 N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~ 545 (1119)
|+++...|..|.. +++|++|++++|++++..+..+....++..+++.+ |++....
T Consensus 90 N~l~~l~~~~f~~------------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 90 NNLLYINPEAFQN------------------------LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp TTCCEECTTSBCC------------------------CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred CcccccCchhhhh------------------------ccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 4444333444444 44444444444444433333333444444444433 2333222
Q ss_pred Ccccccc-ccceEEeccCCcccCCCCCccCCcccccEEEccc-CcccCcCC-cccccCCCCcEEeccCccccccCChhhh
Q 001226 546 PPVFGFW-SNLTMLDFSENRLSGSIPSELGNLENLQILRLSA-NKLDGRIP-YELGKCTKMIKLDLSDNYLAGSIPSEVI 622 (1119)
Q Consensus 546 p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 622 (1119)
+..|..+ ..++.|+|++|+|+ .+|.......+|++|++++ |.+. .+| ..|..+++|++|||++|+|+...+..+
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~- 222 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGL- 222 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSC-
T ss_pred ccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhh-
Confidence 3333333 24566666666665 3343333445566666653 4444 333 345666666666666666663222223
Q ss_pred hcccCCeeEccCccCccCCCccccccccccEeecCCc
Q 001226 623 SLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSN 659 (1119)
Q Consensus 623 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 659 (1119)
.+|+.|.+.++.--..+| .+.++++|+.+++.++
T Consensus 223 --~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 --ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp --TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred --ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 333444433322222455 3666666666666544
No 350
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=8.5e-21 Score=199.46 Aligned_cols=133 Identities=26% Similarity=0.299 Sum_probs=69.7
Q ss_pred CcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEecc
Q 001226 530 GVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLS 609 (1119)
Q Consensus 530 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 609 (1119)
+|++|++++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 34444444444443333344455555555555555554444445555555555555555554434445555555555555
Q ss_pred CccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccC
Q 001226 610 DNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFD 662 (1119)
Q Consensus 610 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 662 (1119)
+|++++..+..+..+++|++|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 55555444444555555556666666555544445555566655555555444
No 351
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=9.8e-21 Score=198.99 Aligned_cols=181 Identities=22% Similarity=0.175 Sum_probs=132.7
Q ss_pred ceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCC
Q 001226 484 FVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSEN 563 (1119)
Q Consensus 484 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N 563 (1119)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555666655 344433 346777777777777666667777788888888888887666666777888888888888
Q ss_pred cccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCc
Q 001226 564 RLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPD 643 (1119)
Q Consensus 564 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 643 (1119)
++++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--- 163 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--- 163 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC---
Confidence 88866666678888888888888888866666678888888888888888866666677888888888888877753
Q ss_pred cccccccccEeecCCcccCCCccccchhhcc
Q 001226 644 AFSSVQSLFELQLGSNIFDGSIPCSLSKLHH 674 (1119)
Q Consensus 644 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 674 (1119)
+++|+.|+++.|.++|.+|.+++.+..
T Consensus 164 ----~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 ----CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCHHHHHHHHHhCCceeeccCccccC
Confidence 446777777777777777766665543
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=6.8e-21 Score=228.33 Aligned_cols=189 Identities=28% Similarity=0.373 Sum_probs=123.7
Q ss_pred ccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeecc
Q 001226 458 YLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVR 537 (1119)
Q Consensus 458 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 537 (1119)
+++.|++++|.+++ +|..+. ++|+.|+|++|+|+ .+| ..+++|+.|+|++|+|++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555554 444332 55666666666666 455 345667777777777765 454 443 67777777
Q ss_pred CcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccC
Q 001226 538 GNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSI 617 (1119)
Q Consensus 538 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 617 (1119)
+|++++ +|. .+++|++|+|++|+|++ +|. .+++|+.|+|++|+|++ +|. +. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777765 454 46677777777777774 555 45677777777777775 665 54 77777777777777 45
Q ss_pred ChhhhhcccC-------CeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhcc
Q 001226 618 PSEVISLEKM-------QSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHH 674 (1119)
Q Consensus 618 p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 674 (1119)
|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 65 443 55 77777777777 56777777777777777777777777777666553
No 353
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.81 E-value=9.1e-21 Score=208.37 Aligned_cols=137 Identities=20% Similarity=0.169 Sum_probs=112.1
Q ss_pred CCceeeecCCccEEEEEeCCCceEEEEEecccc----------------------cccHHHHHHHHhhcCCCCEEEEeee
Q 001226 838 EGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----------------------ETNFDVEIRTLSLVRHRNILRIVGS 895 (1119)
Q Consensus 838 ~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----------------------~~~~~~E~~~l~~l~h~niv~l~~~ 895 (1119)
.++.||+|+||.||+|.+ .+++.||+|+++.. ...+.+|+.++++++ | +++.++
T Consensus 94 ~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v~~~ 169 (282)
T 1zar_A 94 IGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAVPKV 169 (282)
T ss_dssp EEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSSCCE
T ss_pred ecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCcCeE
Confidence 448999999999999999 77999999998532 234779999999998 4 555555
Q ss_pred eecCCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEE
Q 001226 896 CTKDEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIG 975 (1119)
Q Consensus 896 ~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~ 975 (1119)
+.. +..|+||||++|++|.+ +... ....++.|+++|+.|||+. +|+||||||+||+++ ++.+||+
T Consensus 170 ~~~-~~~~lvmE~~~g~~L~~-l~~~---------~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~-~~~vkl~ 234 (282)
T 1zar_A 170 YAW-EGNAVLMELIDAKELYR-VRVE---------NPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-EEGIWII 234 (282)
T ss_dssp EEE-ETTEEEEECCCCEEGGG-CCCS---------CHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE-TTEEEEC
T ss_pred Eec-cceEEEEEecCCCcHHH-cchh---------hHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE-CCcEEEE
Confidence 433 56699999999999988 4321 2346999999999999999 999999999999999 9999999
Q ss_pred eccccccccCCCCCCcccccccCCCcccccccC
Q 001226 976 DFGMSKLISDSHSSSTRSAIVGSLGYIAPENAY 1008 (1119)
Q Consensus 976 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~ 1008 (1119)
|||+|+. +..|.|||++.
T Consensus 235 DFG~a~~---------------~~~~~a~e~l~ 252 (282)
T 1zar_A 235 DFPQSVE---------------VGEEGWREILE 252 (282)
T ss_dssp CCTTCEE---------------TTSTTHHHHHH
T ss_pred ECCCCeE---------------CCCCCHHHHHH
Confidence 9999863 33478888654
No 354
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3.4e-20 Score=205.45 Aligned_cols=171 Identities=23% Similarity=0.301 Sum_probs=103.3
Q ss_pred cccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEE
Q 001226 479 VGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTML 558 (1119)
Q Consensus 479 ~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 558 (1119)
.+++|+.|++++|.+.+ ++ .+..+++|++|++++|++++..+ +..+++|++|++++|++++ +| .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 44555555666555553 22 35556666666666666665433 5666666666666666654 22 35666666666
Q ss_pred eccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCc
Q 001226 559 DFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLS 638 (1119)
Q Consensus 559 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 638 (1119)
+|++|++++. ..+.++++|+.|++++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 6666666642 3566666666666666666643 456666667777777776665333 666666677777777666
Q ss_pred cCCCccccccccccEeecCCcccCC
Q 001226 639 GAIPDAFSSVQSLFELQLGSNIFDG 663 (1119)
Q Consensus 639 ~~~p~~~~~l~~L~~L~L~~N~l~~ 663 (1119)
+ +| .+..+++|+.|++++|+++.
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred C-Ch-hhccCCCCCEEECcCCcccC
Confidence 4 33 36666666666666666654
No 355
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=1.2e-19 Score=220.15 Aligned_cols=237 Identities=21% Similarity=0.233 Sum_probs=145.7
Q ss_pred cceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccC
Q 001226 459 LSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRG 538 (1119)
Q Consensus 459 L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 538 (1119)
+..+.++.+.+.+..+ +..+.+|+.|++++|.+.. +| .+..+++|+.|+|++|++++..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3444455554443322 3445566666666666653 33 46667777777777777765444 66777777777777
Q ss_pred cccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCC
Q 001226 539 NLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIP 618 (1119)
Q Consensus 539 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 618 (1119)
|++++ +| .+..+++|++|+|++|+|++ + ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|+|++..|
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 77764 33 56677777777777777764 2 3577777777777777777743 567777777777777777776544
Q ss_pred hhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCccccccccc
Q 001226 619 SEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLD 698 (1119)
Q Consensus 619 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~ 698 (1119)
+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|++.+.....+..+..+...-++ .+...
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l------------~g~~~ 234 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT------------DGSLV 234 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCS------------SSCBC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEeccccccc------------CCCCc
Confidence 77777777777777777753 357777777777777777765433333322221110011 12222
Q ss_pred ccceeeccCceecccCCcccccccc
Q 001226 699 KLQILDLSSNSFSGEIPTEVNNMVS 723 (1119)
Q Consensus 699 ~L~~L~Ls~N~l~g~ip~~~~~~~~ 723 (1119)
..+.+...++-..|.+|..+..+..
T Consensus 235 ~~~~i~~~g~~~~~~i~~~l~~~~~ 259 (605)
T 1m9s_A 235 TPEIISDDGDYEKPNVKWHLPEFTN 259 (605)
T ss_dssp CCSEESTTCEEETTEEECCCSSCCS
T ss_pred CchhcccCCcccCCcceeccccccc
Confidence 3345556666667766666665544
No 356
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=2.6e-20 Score=232.04 Aligned_cols=195 Identities=19% Similarity=0.219 Sum_probs=124.9
Q ss_pred eeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccc
Q 001226 534 LDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYL 613 (1119)
Q Consensus 534 L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 613 (1119)
++++.|.+. ..|..+..+++|+.|+|++|++. .+|..+.++++|++|+|++|+|+ .+|..|+++++|++|||++|+|
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 345556655 56777888888999999999887 77777778899999999999998 7888889999999999999999
Q ss_pred cccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccc
Q 001226 614 AGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPEC 693 (1119)
Q Consensus 614 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~ 693 (1119)
+ .+|..++.|++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.+++.+|..+..+......++|++|.++|.+|..
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 8 67888999999999999999987 778889999999999999999999888888776544445889999999998864
Q ss_pred cccccccceeeccCc--------eecccCCccccccccceEEecccccccccCC
Q 001226 694 LGNLDKLQILDLSSN--------SFSGEIPTEVNNMVSLYFVNISFNHFSGKLP 739 (1119)
Q Consensus 694 ~~~l~~L~~L~Ls~N--------~l~g~ip~~~~~~~~l~~l~ls~N~~~g~~p 739 (1119)
|+.|++++| .|++.++..+.++..+....+++|-+.+...
T Consensus 361 ------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 361 ------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp -----------------------------------------------CCCGGGC
T ss_pred ------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 456677777 5555556666777788888999998876544
No 357
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.7e-19 Score=218.91 Aligned_cols=193 Identities=23% Similarity=0.337 Sum_probs=139.2
Q ss_pred ccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEe
Q 001226 480 GTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLD 559 (1119)
Q Consensus 480 ~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 559 (1119)
+..+..+.++.+.+.+..+ +..+++|+.|++++|.+... | .+..+++|+.|+|++|++++..| +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 4456677888888775443 56788888889998888743 3 47788888888888888876544 77788888888
Q ss_pred ccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCcc
Q 001226 560 FSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSG 639 (1119)
Q Consensus 560 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 639 (1119)
|++|+|++ +| .+..+++|+.|+|++|++.+ + ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|+|++
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 88888874 33 67778888888888888874 3 3577788888888888888753 567777788888888888876
Q ss_pred CCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceeccc
Q 001226 640 AIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGE 713 (1119)
Q Consensus 640 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 713 (1119)
..| +..+++|+.|+|++|++++ +| .+..+++|+.|+|++|++++.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~--------------------------l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISD--------------------------LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB--------------------------CG-GGTTCTTCSEEECCSEEEECC
T ss_pred chh--hccCCCCCEEECcCCCCCC--------------------------Ch-HHccCCCCCEEEccCCcCcCC
Confidence 655 7777777776666666553 22 355566666666666666654
No 358
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2.4e-19 Score=198.53 Aligned_cols=190 Identities=24% Similarity=0.349 Sum_probs=126.3
Q ss_pred ccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEecc
Q 001226 482 NLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFS 561 (1119)
Q Consensus 482 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls 561 (1119)
.+..+.++.+.+++.. .+..+++|+.|++++|.+... + .+..+++|+.|++++|++++..+ +..+++|++|+|+
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 4445566666665432 245788888888888888754 3 36777777777777777775443 6777777777777
Q ss_pred CCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCC
Q 001226 562 ENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAI 641 (1119)
Q Consensus 562 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 641 (1119)
+|++++ +| .+.++++|+.|+|++|++.+ + ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..
T Consensus 99 ~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 99 ENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 777764 33 36777777777777777764 3 3566677777777777777643 45666777777777777776544
Q ss_pred CccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceecc
Q 001226 642 PDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSG 712 (1119)
Q Consensus 642 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 712 (1119)
| +..+++|+.|+|++|.++ + +| .+..+++|+.|++++|+++.
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~-------------------------~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHIS-------------------------D-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCC-------------------------B-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--hcCCCccCEEECCCCcCC-------------------------C-Ch-hhccCCCCCEEECcCCcccC
Confidence 3 666666666555555443 2 33 26677778888888887774
No 359
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=1.1e-19 Score=197.92 Aligned_cols=170 Identities=18% Similarity=0.179 Sum_probs=98.6
Q ss_pred ccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEe
Q 001226 480 GTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLD 559 (1119)
Q Consensus 480 ~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 559 (1119)
+.++..+++++|.+++. + .+..+++|+.|++++|.++. +| .+..+++|+.|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 34444555555555522 2 34555566666666665553 23 45556666666666666654333 55666666666
Q ss_pred ccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCcc
Q 001226 560 FSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSG 639 (1119)
Q Consensus 560 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 639 (1119)
|++|++++ +|.... ++|+.|+|++|++++ +| .+..+++|+.|+|++|++++ +| .+..+++|+.|+|++|++++
T Consensus 92 L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 66666653 333222 666666666666663 33 46666666666666666664 33 46666666666666666665
Q ss_pred CCCccccccccccEeecCCcccCCC
Q 001226 640 AIPDAFSSVQSLFELQLGSNIFDGS 664 (1119)
Q Consensus 640 ~~p~~~~~l~~L~~L~L~~N~l~~~ 664 (1119)
. ..+..+++|+.|++++|.+++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 5566666666666666666544
No 360
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=186.15 Aligned_cols=153 Identities=22% Similarity=0.289 Sum_probs=70.1
Q ss_pred EEeccCCcccCCCCCccCCcccccEEEcccCcccCcCC-cccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCc
Q 001226 557 MLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIP-YELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQEN 635 (1119)
Q Consensus 557 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 635 (1119)
.+++++|.++ .+|..+. ..++.|+|++|++++..| ..|..+++|+.|+|++|+|++..|..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555555554 3444443 234555555555554333 23455555555555555555444445555555555555555
Q ss_pred cCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceeccc
Q 001226 636 NLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGE 713 (1119)
Q Consensus 636 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 713 (1119)
+|++..|..|..+++|++|+|++|.+++..|..+..+..+ +.|+|++|+|++..|..|..+++|+.|+|++|++++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV-RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC-SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC-CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 5555555555555555554433333332111111111111 0133333333333344455555555555555555443
No 361
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=184.51 Aligned_cols=135 Identities=21% Similarity=0.270 Sum_probs=96.1
Q ss_pred cceeeccCcccCCCCC-ccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEecc
Q 001226 531 VSFLDVRGNLLQGSIP-PVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLS 609 (1119)
Q Consensus 531 L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 609 (1119)
++.|++++|++++..| ..|..+++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3455555555554433 345667777777777777776666677777777777777777776666667777777777777
Q ss_pred CccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCc
Q 001226 610 DNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSI 665 (1119)
Q Consensus 610 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 665 (1119)
+|+|++..|..+..+++|++|+|++|+|++..|..|..+++|+.|+|++|.+.+..
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 77777766777777777778888888887777777888888888777777776543
No 362
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=7.9e-19 Score=201.10 Aligned_cols=176 Identities=22% Similarity=0.149 Sum_probs=123.7
Q ss_pred ceeeccCccccCCCCccccccccccEEEeccCccccCCCcccc-CCCCcceeeccCcccCCCCCccccccccceEEeccC
Q 001226 484 FVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLE-RNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSE 562 (1119)
Q Consensus 484 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~ 562 (1119)
+.+++++|+++ .+|..+. +.++.|+|++|+|++..+..+. .+++|+.|+|++|++++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666777666 4555443 3467777777777776666666 777777777777777766666777777777777777
Q ss_pred CcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhh---hhcccCCeeEccCccCcc
Q 001226 563 NRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEV---ISLEKMQSLSLQENNLSG 639 (1119)
Q Consensus 563 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~ 639 (1119)
|+|++..+..|.++++|+.|+|++|++.+..|..|..+++|+.|+|++|+|++..+..+ ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77776666677777778888888888776667777777888888888888775333333 457777778888887776
Q ss_pred CCCccccccccc--cEeecCCcccC
Q 001226 640 AIPDAFSSVQSL--FELQLGSNIFD 662 (1119)
Q Consensus 640 ~~p~~~~~l~~L--~~L~L~~N~l~ 662 (1119)
..+..|..++.+ +.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 655667777663 66777777665
No 363
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=5e-21 Score=230.99 Aligned_cols=215 Identities=20% Similarity=0.173 Sum_probs=107.9
Q ss_pred CCccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceee
Q 001226 456 FPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLD 535 (1119)
Q Consensus 456 l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 535 (1119)
.+.|+.|+|++|.++ .+|..++.+++|+.|++++|......|.. +..+.+.+.+|..+..+++|+.|+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcccCc
Confidence 455566666666654 45555555555555555444311000000 001112334444444445555554
Q ss_pred -ccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcccc
Q 001226 536 -VRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLA 614 (1119)
Q Consensus 536 -l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 614 (1119)
++.|.+ .+|..+.+++|.+++..+ ..|+.|+|++|+|++ +|. ++.+++|+.|+|++|+|+
T Consensus 416 ~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 416 PMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp GGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred chhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 333322 234444455555542211 125555555555553 444 555555555555555555
Q ss_pred ccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCc-ccc
Q 001226 615 GSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKI-PEC 693 (1119)
Q Consensus 615 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~-p~~ 693 (1119)
.+|..++.+++|+.|+|++|+|++ +| .|+.+++|+. |+|++|+|++.+ |..
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~-------------------------L~Ls~N~l~~~~~p~~ 528 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQE-------------------------LLLCNNRLQQSAAIQP 528 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCE-------------------------EECCSSCCCSSSTTGG
T ss_pred -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcE-------------------------EECCCCCCCCCCCcHH
Confidence 455555555555555555555554 44 5555555555 444444444444 666
Q ss_pred cccccccceeeccCceecccCCcc---ccccccceEEec
Q 001226 694 LGNLDKLQILDLSSNSFSGEIPTE---VNNMVSLYFVNI 729 (1119)
Q Consensus 694 ~~~l~~L~~L~Ls~N~l~g~ip~~---~~~~~~l~~l~l 729 (1119)
++.+++|+.|+|++|+|++.+|.. +..+++|+.||+
T Consensus 529 l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred HhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 677777777777777777554422 122556666653
No 364
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=7.8e-21 Score=229.33 Aligned_cols=202 Identities=20% Similarity=0.129 Sum_probs=145.7
Q ss_pred cCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCccCCccccccccceeeccCccccCCCCcccccccccc
Q 001226 429 TRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLR 508 (1119)
Q Consensus 429 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 508 (1119)
..+++|+.|+|++|+|+ .+|..+. .++.|+.|++++|......|. .+..+.+.+..|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELE-SCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHH-HHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHH-HHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhcc
Confidence 67899999999999997 7777765 588999999977752111110 1112233445666777777777
Q ss_pred EEE-eccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccC
Q 001226 509 RVI-LSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSAN 587 (1119)
Q Consensus 509 ~L~-Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 587 (1119)
.|+ ++.|.+. .|..+.+++|.++...+ ..|+.|+|++|+|++ +|. |+++++|+.|+|++|
T Consensus 413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 413 AVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred cCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence 777 6666543 35556666676653221 247788888888874 565 888888888888888
Q ss_pred cccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCC-CccccccccccEeecCCcccCCCc
Q 001226 588 KLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAI-PDAFSSVQSLFELQLGSNIFDGSI 665 (1119)
Q Consensus 588 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~ 665 (1119)
+|+ .+|..++.+++|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 887 778888888888888888888875 66 7788888888888888888776 888888888888777777776443
No 365
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2e-18 Score=182.60 Aligned_cols=133 Identities=22% Similarity=0.267 Sum_probs=86.8
Q ss_pred CcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEecc
Q 001226 530 GVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLS 609 (1119)
Q Consensus 530 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 609 (1119)
+++.|++++|++++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44455555555554444455666666666666666666566666666677777777777664444455667777777777
Q ss_pred CccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccC
Q 001226 610 DNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFD 662 (1119)
Q Consensus 610 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 662 (1119)
+|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77776666666777777777777777777666666777777777777777665
No 366
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.4e-18 Score=182.11 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=116.7
Q ss_pred ceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCC
Q 001226 484 FVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSEN 563 (1119)
Q Consensus 484 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N 563 (1119)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666666 4555443 56777777777777766677777778888888888877777777888888888888888
Q ss_pred cccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCcc
Q 001226 564 RLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSG 639 (1119)
Q Consensus 564 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 639 (1119)
+|++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8876555567788888888888888887777788888888888888888887666677788888888888888764
No 367
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=9.1e-20 Score=227.10 Aligned_cols=266 Identities=18% Similarity=0.181 Sum_probs=106.6
Q ss_pred CCCcHHHHHHHHhcCCCCCC-CCCCCCCCCCCCCCceeeeeeeecCCCceEEEecCCCcccccCccchhhhccCCcccEE
Q 001226 23 SPPSAISLVQFLDSLPKQSQ-SHLPWNQSVSTSAPCKWSGVSCYNNSSSLKALNLSGFGLSGVLNNSISYICKNQHLLSL 101 (1119)
Q Consensus 23 ~~~~~~~ll~~~~~~~~~~~-~~~~w~~~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~~~~l~~l~~L 101 (1119)
...++++|+++.......+. .-.+|... .+..+.|.+++++. ++++.|+|.++++..... ..++.+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~---------~~l~~l 196 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGD--STPSGTATNSAVST--PLTPKIELFANGKDEANQ---------ALLQHK 196 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCC--CCccccCCCceecC--CccceEEeeCCCCCcchh---------hHhhcC
Confidence 45678999999987643321 22356432 23457899999975 589999999988877432 234445
Q ss_pred EcCCCcccC---------CCCcccccCCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCcccccccccce
Q 001226 102 DLSGNEFTG---------SIPKQLGNCGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLES 172 (1119)
Q Consensus 102 ~Ls~n~~~~---------~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 172 (1119)
+|+.|.+.+ ..|..+..++.|++|+|++|++. .+|..+..+++|++|+|++|.|+ .+|..|+++++|++
T Consensus 197 ~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 197 KLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRV 274 (727)
T ss_dssp -------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCE
T ss_pred ccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCE
Confidence 555554443 34666777788888888888777 67777777888888888888777 67777777777777
Q ss_pred eeecccccccccCccCCCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccC
Q 001226 173 IGFHNNFLNGELPNDICSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFG 252 (1119)
Q Consensus 173 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~ 252 (1119)
|+|++|.++ .+|..|+.+++|++|+|++|.|+ .+|..|+++++|++|+|++|.++
T Consensus 275 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~------------------------~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 275 LDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT------------------------TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC------------------------CCCSSTTSCTTCCCEECTTSCCC
T ss_pred EeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC------------------------ccChhhhcCCCccEEeCCCCccC
Confidence 777777777 56777777777777777777765 34445666666666666666665
Q ss_pred CccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCccc
Q 001226 253 GAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSV 332 (1119)
Q Consensus 253 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 332 (1119)
+.++.........+..|+|++|.+++.+|.. |+.|+++.|... .. ..+.+.+..+..+
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~---~~-------------~~~~l~~~~~~~~ 387 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEP---QR-------------EYDSLQQSTEHLA 387 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------------------------------------------------
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeeccccc---cc-------------ccCCccccccchh
Confidence 4433222111111223455555555555432 233444444100 00 0113333344445
Q ss_pred CCCCCCCeEEccCCcccC
Q 001226 333 GNLSSLNSLLLFNNRLQG 350 (1119)
Q Consensus 333 ~~l~~L~~L~L~~N~l~~ 350 (1119)
.++..++...++.|-+.+
T Consensus 388 ~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 388 TDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp --------------CCCG
T ss_pred hcccccceeeeecccccc
Confidence 566666777777777653
No 368
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=6.6e-18 Score=179.96 Aligned_cols=154 Identities=23% Similarity=0.266 Sum_probs=104.1
Q ss_pred cEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccC
Q 001226 508 RRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSAN 587 (1119)
Q Consensus 508 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 587 (1119)
+.++.+++.+. .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|+.|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34455555544 2333222 55666666666666666666666777777777777776555556677777777777777
Q ss_pred cccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCc
Q 001226 588 KLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSI 665 (1119)
Q Consensus 588 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 665 (1119)
+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+.+..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 777555556677777777777777777 56777777777777777777777666667777788888777777776443
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.4e-18 Score=189.35 Aligned_cols=170 Identities=22% Similarity=0.255 Sum_probs=130.3
Q ss_pred CCccceeccccceeeCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceee
Q 001226 456 FPYLSRLDLTGNSFYGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLD 535 (1119)
Q Consensus 456 l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 535 (1119)
+..+..+++++|.+++.. .+..+++|+.|++++|+++ .+| .+..+++|++|+|++|++++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344556666666665433 4566777777777777777 445 67778888888888888886554 78888888888
Q ss_pred ccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccc
Q 001226 536 VRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAG 615 (1119)
Q Consensus 536 l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 615 (1119)
+++|++++ +|.... ++|++|+|++|++++ +| .+.++++|+.|+|++|++++ +| .+..+++|+.|+|++|++++
T Consensus 92 L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 88888875 443333 889999999999985 33 58888999999999999985 44 68889999999999999986
Q ss_pred cCChhhhhcccCCeeEccCccCccC
Q 001226 616 SIPSEVISLEKMQSLSLQENNLSGA 640 (1119)
Q Consensus 616 ~~p~~~~~l~~L~~L~L~~N~l~~~ 640 (1119)
. ..+..+++|+.|++++|++++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 6788888999999999999865
No 370
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=7.5e-18 Score=179.53 Aligned_cols=155 Identities=21% Similarity=0.217 Sum_probs=127.9
Q ss_pred cceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccC
Q 001226 483 LFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSE 562 (1119)
Q Consensus 483 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~ 562 (1119)
-+.++.++++++ .+|..+. ++|+.|+|++|.+++..|..|..+++|+.|+|++|+++...+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345777777776 5665543 7888888888888888888888888888888888888766667778888999999999
Q ss_pred CcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCC
Q 001226 563 NRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAI 641 (1119)
Q Consensus 563 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 641 (1119)
|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..+..+++|+.|+|++|.+.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9998777777888999999999999998 78888889999999999999998766677888899999999999988654
No 371
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=2.5e-18 Score=196.95 Aligned_cols=176 Identities=23% Similarity=0.188 Sum_probs=98.9
Q ss_pred cEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCcccc-ccccceEEeccCCcccCCCCCccCCcccccEEEccc
Q 001226 508 RRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFG-FWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSA 586 (1119)
Q Consensus 508 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 586 (1119)
+.+++++|.++. +|..+. +.++.|+|++|++++..+..|. .+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 466777777663 444332 2355666666666655555554 556666666666666655555566666666666666
Q ss_pred CcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccCccCCCccc---cccccccEeecCCcccCC
Q 001226 587 NKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAF---SSVQSLFELQLGSNIFDG 663 (1119)
Q Consensus 587 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~ 663 (1119)
|+|.+..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~------ 171 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS------ 171 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC------
Confidence 66655444555666666666666666665555556666666666666666664333333 345555555554
Q ss_pred CccccchhhccccceeeeccccccCCcccccccccc--cceeeccCceec
Q 001226 664 SIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDK--LQILDLSSNSFS 711 (1119)
Q Consensus 664 ~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~ 711 (1119)
+|+|++..+..+..++. |+.|+|++|+++
T Consensus 172 -------------------~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 172 -------------------SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -------------------SSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -------------------CCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 45554333344555554 366677777665
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.6e-17 Score=172.65 Aligned_cols=154 Identities=20% Similarity=0.200 Sum_probs=106.7
Q ss_pred ccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCccccc
Q 001226 501 IGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQ 580 (1119)
Q Consensus 501 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 580 (1119)
.+.+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..|+++++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 355666667777776666 334 4666666777777766554 233566677777777777777766777777777788
Q ss_pred EEEcccCcccCcCCcccccCCCCcEEeccCcc-ccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCc
Q 001226 581 ILRLSANKLDGRIPYELGKCTKMIKLDLSDNY-LAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSN 659 (1119)
Q Consensus 581 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 659 (1119)
+|+|++|++++..|..+..+++|++|+|++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 88888887776667777777788888888877 54 455 57777778888888888775 33 6777777777777777
Q ss_pred ccC
Q 001226 660 IFD 662 (1119)
Q Consensus 660 ~l~ 662 (1119)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 664
No 373
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2.3e-17 Score=171.41 Aligned_cols=155 Identities=16% Similarity=0.186 Sum_probs=119.8
Q ss_pred ccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceE
Q 001226 478 CVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTM 557 (1119)
Q Consensus 478 ~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 557 (1119)
..+++|+.|++++|+++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45567777777777777 555 5777888888888888664 3346778888888888888888777788888888888
Q ss_pred EeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCccC
Q 001226 558 LDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQENNL 637 (1119)
Q Consensus 558 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 637 (1119)
|+|++|++++..|..++++++|++|+|++|++.+.+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 8888888887778888888888888888888333566 68888889999999998875 44 778888899999998887
Q ss_pred cc
Q 001226 638 SG 639 (1119)
Q Consensus 638 ~~ 639 (1119)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 64
No 374
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.9e-17 Score=169.72 Aligned_cols=132 Identities=27% Similarity=0.393 Sum_probs=102.3
Q ss_pred ceeeccCcccCCCCCccccccccceEEeccCCcccCCCCC-ccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccC
Q 001226 532 SFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPS-ELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSD 610 (1119)
Q Consensus 532 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 610 (1119)
+.+++++|+++ .+|..+. .+|++|+|++|+|++..+. .|+++++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 44555555554 4555443 2788888888888765554 478888888888888888877788888888888888888
Q ss_pred ccccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCcc
Q 001226 611 NYLAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIP 666 (1119)
Q Consensus 611 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 666 (1119)
|+|++..|..+..+++|++|+|++|+|++.+|..|..+++|+.|+|++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887777778888888888888888888888888888888888888888876654
No 375
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=4.1e-17 Score=168.62 Aligned_cols=133 Identities=27% Similarity=0.363 Sum_probs=107.6
Q ss_pred ceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCc-ccccCCCCcEEeccCccccccCChhhhhcccCCeeEcc
Q 001226 555 LTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPY-ELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQ 633 (1119)
Q Consensus 555 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 633 (1119)
-+.+++++|+++ .+|..+.. +|++|+|++|++.+..+. .+..+++|++|+|++|+|++..|..|..+++|++|+|+
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 378999999996 77877764 899999999999866654 48889999999999999998888889999999999999
Q ss_pred CccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcccccccccccceeeccCceeccc
Q 001226 634 ENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIPECLGNLDKLQILDLSSNSFSGE 713 (1119)
Q Consensus 634 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 713 (1119)
+|+|++..|..|..+++|+.|+|++|++ ++.+|..|+.+++|++|+|++|+|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQI-------------------------SCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCC-------------------------CEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcC-------------------------CeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999988888888888888765555544 445566777778888888888888876
Q ss_pred CC
Q 001226 714 IP 715 (1119)
Q Consensus 714 ip 715 (1119)
.|
T Consensus 142 c~ 143 (192)
T 1w8a_A 142 CH 143 (192)
T ss_dssp GG
T ss_pred Cc
Confidence 65
No 376
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=2e-17 Score=186.88 Aligned_cols=201 Identities=14% Similarity=0.059 Sum_probs=115.9
Q ss_pred cccCCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeecccc----ccccCccccc
Q 001226 234 SLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANK----LNGTISGQIS 309 (1119)
Q Consensus 234 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~----l~~~~~~~~~ 309 (1119)
.+.+|++|+++++.. +++ .|...+|.++++|+.|++++|.++...+.+|.++.++..+.+..+. ...+....|.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 333488888888888 665 6778888888888888888888887778888887777777766532 2334455666
Q ss_pred CCCCCc-EEEcccccc-ccccCccc------------------------CCCCCCCeEEccCCcccCCCCCCCCCCCCCc
Q 001226 310 HCNQLQ-VIALSRNNL-VGQIPRSV------------------------GNLSSLNSLLLFNNRLQGTLPPELGNCGSLV 363 (1119)
Q Consensus 310 ~l~~L~-~L~Ls~N~l-~~~~~~~~------------------------~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 363 (1119)
++..|+ .+++....- ...+...- ..+++|+.|+|++|+++...+.+|.++++|+
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 666666 444432210 00000000 0245555555555555544444555555555
Q ss_pred EEEcccCcCcccCchhhhcccccc-eeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEE
Q 001226 364 DLRLQHNFIGGTIPPEICNLAKLE-VLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLS 438 (1119)
Q Consensus 364 ~L~L~~N~i~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 438 (1119)
.|++++| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5555555 4444444555555555 555555 44444455555555555555555555544444555555555554
No 377
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.7e-17 Score=185.82 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=52.4
Q ss_pred cccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccce-EEeccCCcccCCCCCccCCcccccEE
Q 001226 504 CSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLT-MLDFSENRLSGSIPSELGNLENLQIL 582 (1119)
Q Consensus 504 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L 582 (1119)
+++|+.|+|++|.++...+..|..+++|+.+++.+| ++...+..|..+++|+ .+++.+ +++..-+.+|.++++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 344444444444444444444444444444444444 3333334455555555 555555 4443444556666666666
Q ss_pred EcccCcccCcCCcccccCCCCcEEe
Q 001226 583 RLSANKLDGRIPYELGKCTKMIKLD 607 (1119)
Q Consensus 583 ~Ls~N~l~~~~p~~~~~l~~L~~L~ 607 (1119)
+++.|++...-+..|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6666666544445566666666554
No 378
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.68 E-value=4.4e-17 Score=176.82 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=102.9
Q ss_pred CCceeeecCCccEEEEEeCCCceE--EEEEeccccc----------------------------ccHHHHHHHHhhcCCC
Q 001226 838 EGRIIGKGKHGTVYRTLSNNSRKH--WAVKKLNRSE----------------------------TNFDVEIRTLSLVRHR 887 (1119)
Q Consensus 838 ~~~~lG~G~fg~Vy~~~~~~~~~~--vavK~~~~~~----------------------------~~~~~E~~~l~~l~h~ 887 (1119)
..+.||+|+||.||+|.+..+|+. ||||+++... ..+.+|+..+++++|+
T Consensus 51 i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~ 130 (258)
T 1zth_A 51 MGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEA 130 (258)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhC
Confidence 457899999999999998666888 9999864321 1467899999999877
Q ss_pred CE--EEEeeeeecCCceEEEEeccCC-C----CHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHH-hCCCCCeEecCC
Q 001226 888 NI--LRIVGSCTKDEHGFIVTEYMPG-G----TLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLH-YDCVPQIIHRDI 959 (1119)
Q Consensus 888 ni--v~l~~~~~~~~~~~lV~e~~~~-g----sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH-~~~~~~ivH~Dl 959 (1119)
++ ...+++ ...++||||+++ | +|.++... .++..+..++.|++.|+.||| +. +|+||||
T Consensus 131 ~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~~---givHrDl 197 (258)
T 1zth_A 131 GVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQEA---ELVHADL 197 (258)
T ss_dssp TCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHHTS---CEECSSC
T ss_pred CCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHHHC---CEEeCCC
Confidence 53 333332 356899999942 3 67666432 123456789999999999999 88 9999999
Q ss_pred CCCCeEeCCCCceEEEeccccccc
Q 001226 960 KSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 960 kp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
||+|||++. .++|+|||+|...
T Consensus 198 kp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 198 SEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp STTSEEESS--SEEECCCTTCEET
T ss_pred CHHHEEEcC--cEEEEECcccccC
Confidence 999999998 9999999999754
No 379
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=6.4e-16 Score=156.01 Aligned_cols=136 Identities=23% Similarity=0.233 Sum_probs=91.3
Q ss_pred ccceEEeccCCccc-CCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeE
Q 001226 553 SNLTMLDFSENRLS-GSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLS 631 (1119)
Q Consensus 553 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 631 (1119)
++|++|+|++|+++ +.+|..+..+++|+.|+|++|++++. ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777776 66777777777788888888877754 6677777788888888887766777777777777777
Q ss_pred ccCccCccCC-CccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcc---cccccccccceeeccC
Q 001226 632 LQENNLSGAI-PDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIP---ECLGNLDKLQILDLSS 707 (1119)
Q Consensus 632 L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p---~~~~~l~~L~~L~Ls~ 707 (1119)
|++|++++.. +..|..+++|+.|++++|.++ +..+ ..+..+++|+.||+++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-------------------------~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-------------------------NLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-------------------------TSTTHHHHHHTTCSSCCEETTEE
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-------------------------chHHHHHHHHHhCccCcEecCCC
Confidence 7777777532 256666666666554444433 2222 2556666666777776
Q ss_pred ceecccCCc
Q 001226 708 NSFSGEIPT 716 (1119)
Q Consensus 708 N~l~g~ip~ 716 (1119)
|.++ ++|.
T Consensus 157 n~~~-~~~~ 164 (168)
T 2ell_A 157 REDQ-EAPD 164 (168)
T ss_dssp TTSC-BCCS
T ss_pred CChh-hccc
Confidence 6665 4444
No 380
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=6.1e-16 Score=156.17 Aligned_cols=132 Identities=23% Similarity=0.207 Sum_probs=77.4
Q ss_pred CCcceeeccCcccC-CCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEe
Q 001226 529 PGVSFLDVRGNLLQ-GSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLD 607 (1119)
Q Consensus 529 ~~L~~L~l~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 607 (1119)
++|+.|++++|+++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 33444444444444 34555555566666666666666543 5566666666666666666655565555566666666
Q ss_pred ccCccccccC-ChhhhhcccCCeeEccCccCccCCC---ccccccccccEeecCCcccC
Q 001226 608 LSDNYLAGSI-PSEVISLEKMQSLSLQENNLSGAIP---DAFSSVQSLFELQLGSNIFD 662 (1119)
Q Consensus 608 Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~ 662 (1119)
|++|++++.. +..+..+++|++|++++|++++..+ ..|..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666666421 1556666666666666666664443 35666666666666666554
No 381
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=1e-14 Score=168.08 Aligned_cols=266 Identities=11% Similarity=0.081 Sum_probs=146.6
Q ss_pred CCCccEEEcccccccccCCccccccCccCEEEccCccccCCCCcccccccccceeeecccccccccCccCCCcccccEEE
Q 001226 119 CGQLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCYSLESIGFHNNFLNGELPNDICSLPKLKSLY 198 (1119)
Q Consensus 119 l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 198 (1119)
+..++.+.+.+ .++.....+|.+. +|+.++|..+ ++.....+|.++ +|+.+.+.+ .++.+...+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 34555555543 2332333444443 4555655544 443344444443 455555553 44444455555555555555
Q ss_pred eccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCC
Q 001226 199 LNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEG 278 (1119)
Q Consensus 199 L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~ 278 (1119)
+..|+++ .++...|. ..+|+.+.|.++ ++.
T Consensus 187 l~~n~l~------------------------------------------------~I~~~aF~-~~~L~~l~lp~~-l~~ 216 (401)
T 4fdw_A 187 LSKTKIT------------------------------------------------KLPASTFV-YAGIEEVLLPVT-LKE 216 (401)
T ss_dssp CTTSCCS------------------------------------------------EECTTTTT-TCCCSEEECCTT-CCE
T ss_pred cCCCcce------------------------------------------------EechhhEe-ecccCEEEeCCc-hhe
Confidence 5555444 23333343 244455555422 443
Q ss_pred CcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCCccc-----CCCC
Q 001226 279 QIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQ-----GTLP 353 (1119)
Q Consensus 279 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~ 353 (1119)
....+|.++++|+.+++..| ++.+...+|.+ .+|+.+.+ .+.++.....+|.++++|+.+++.+|.+. ...+
T Consensus 217 I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~ 293 (401)
T 4fdw_A 217 IGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP 293 (401)
T ss_dssp ECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT
T ss_pred ehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH
Confidence 44445555555555555443 34444445554 45555555 23344344455555556666655555443 3445
Q ss_pred CCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCC-
Q 001226 354 PELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLR- 432 (1119)
Q Consensus 354 ~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~- 432 (1119)
.+|.+|++|+.+++.+ .++.+...+|.++++|+.+.|..| ++.+...+|.++ +|+.+++++|.+....+..|..++
T Consensus 294 ~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~ 370 (401)
T 4fdw_A 294 YCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPD 370 (401)
T ss_dssp TTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCT
T ss_pred HHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCC
Confidence 5677777777777773 465555667777777777777544 555666777777 788888877777655666677764
Q ss_pred CcCEEEccCccCc
Q 001226 433 NLQFLSLAHNHLT 445 (1119)
Q Consensus 433 ~L~~L~L~~N~l~ 445 (1119)
+++.|++..+.+.
T Consensus 371 ~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 371 DITVIRVPAESVE 383 (401)
T ss_dssp TCCEEEECGGGHH
T ss_pred CccEEEeCHHHHH
Confidence 6778888777654
No 382
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=154.86 Aligned_cols=127 Identities=25% Similarity=0.346 Sum_probs=94.8
Q ss_pred eeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcc
Q 001226 533 FLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNY 612 (1119)
Q Consensus 533 ~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 612 (1119)
.+++++|+++ .+|..+ .++|++|+|++|+|+ .+|..|.++++|+.|+|++|++++..|..|..+++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4555555555 344433 246778888888887 667778888888888888888886666778888888888888888
Q ss_pred ccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCC
Q 001226 613 LAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDG 663 (1119)
Q Consensus 613 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 663 (1119)
|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 887777778888888888888888886666678888888888888887753
No 383
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=7.4e-16 Score=152.14 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=52.6
Q ss_pred CCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcccccc-CChhhhh
Q 001226 545 IPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGS-IPSEVIS 623 (1119)
Q Consensus 545 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~ 623 (1119)
+|..+..+++|++|+|++|++++. ..++++++|++|+|++|++.+.+|..+..+++|++|++++|++++. .|..+..
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~ 111 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG
T ss_pred HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh
Confidence 333344444444444444444432 4444445555555555555444444444455555555555555431 2244455
Q ss_pred cccCCeeEccCccCccCCC---ccccccccccEeecC
Q 001226 624 LEKMQSLSLQENNLSGAIP---DAFSSVQSLFELQLG 657 (1119)
Q Consensus 624 l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~ 657 (1119)
+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 112 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 112 LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555555555554333 345555555555443
No 384
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=4.5e-15 Score=151.15 Aligned_cols=131 Identities=26% Similarity=0.281 Sum_probs=94.8
Q ss_pred eeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcc
Q 001226 533 FLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNY 612 (1119)
Q Consensus 533 ~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 612 (1119)
.+++++|+++ .+|..+ .++|++|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|+
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4445555554 234322 2577788888888876666667778888888888888876555667788888888888888
Q ss_pred ccccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccCCCcc
Q 001226 613 LAGSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIP 666 (1119)
Q Consensus 613 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 666 (1119)
+++..+..+..+++|++|+|++|++++..+..|..+++|+.|+|++|.+++..|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 886666667778888888888888886666667788888888888888876554
No 385
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.4e-15 Score=150.15 Aligned_cols=128 Identities=23% Similarity=0.238 Sum_probs=85.8
Q ss_pred ccccEEEeccCccc-cCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEE
Q 001226 505 SSLRRVILSNNLLQ-GSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILR 583 (1119)
Q Consensus 505 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 583 (1119)
++|+.|++++|.++ +.+|..+..+++|+.|++++|++++. ..++.+++|++|+|++|++++.+|..+.++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555555555 45555555666666666666666544 5566677777777777777766677666777777777
Q ss_pred cccCcccCc-CCcccccCCCCcEEeccCccccccCC---hhhhhcccCCeeEccC
Q 001226 584 LSANKLDGR-IPYELGKCTKMIKLDLSDNYLAGSIP---SEVISLEKMQSLSLQE 634 (1119)
Q Consensus 584 Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~ 634 (1119)
+++|++++. .|..++.+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777752 23667777778888888887776544 4677777788777753
No 386
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=4e-14 Score=163.21 Aligned_cols=264 Identities=11% Similarity=0.140 Sum_probs=152.2
Q ss_pred CCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEE
Q 001226 239 RNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIA 318 (1119)
Q Consensus 239 ~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 318 (1119)
..++++.+..+ ++ .|...+|.+. +|+.+.+.++ ++.....+|.+. +|+.+.+.. .++.+...+|.+|++|+.++
T Consensus 113 ~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 44555555432 22 4556667664 6777777665 665666667663 577777764 56666667777777777777
Q ss_pred ccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccC
Q 001226 319 LSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEG 398 (1119)
Q Consensus 319 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 398 (1119)
+++|+++.....+|. .++|+.+.+.++ ++.....+|.++++|+.+++..| ++.+...+|.+ .+|+.+.+ .+.++.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccE
Confidence 777777644444454 467777777644 55455666777777777777654 44344455555 56666666 344554
Q ss_pred CCCccccccCcceEEEeeccccc-----ccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCcc
Q 001226 399 AIPHQIGRMSKLVELALYNNRLT-----GRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGPI 473 (1119)
Q Consensus 399 ~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 473 (1119)
+...+|.++++|+.+++.+|.+. ...+..|.++++|+.++|.+ .++ .++..
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~---------------------- 317 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQG---------------------- 317 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTT----------------------
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhh----------------------
Confidence 55566666666666666666553 23344555555555555552 233 33333
Q ss_pred CCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCC-CcceeeccCccc
Q 001226 474 PANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNP-GVSFLDVRGNLL 541 (1119)
Q Consensus 474 p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l~~N~l 541 (1119)
.|..+++|+.+.+..| ++..-+.+|.++ +|+.+++++|.+....+..|..++ .++.|.+..+.+
T Consensus 318 --aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 318 --LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp --TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred --hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4444445555555333 333334455555 566666666655544455555553 455565555443
No 387
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=150.16 Aligned_cols=94 Identities=24% Similarity=0.318 Sum_probs=46.4
Q ss_pred CCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhc
Q 001226 545 IPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISL 624 (1119)
Q Consensus 545 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 624 (1119)
+|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+
T Consensus 46 ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (193)
T 2wfh_A 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125 (193)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcC
Confidence 33444444445555555555544444445555555555555555554444445555555555555555554333344455
Q ss_pred ccCCeeEccCccCc
Q 001226 625 EKMQSLSLQENNLS 638 (1119)
Q Consensus 625 ~~L~~L~L~~N~l~ 638 (1119)
++|+.|+|++|.+.
T Consensus 126 ~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 126 SALSHLAIGANPLY 139 (193)
T ss_dssp TTCCEEECCSSCEE
T ss_pred ccccEEEeCCCCee
Confidence 55555555555554
No 388
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.2e-14 Score=148.02 Aligned_cols=128 Identities=24% Similarity=0.240 Sum_probs=57.7
Q ss_pred ceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCC
Q 001226 484 FVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSEN 563 (1119)
Q Consensus 484 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N 563 (1119)
+.+++++|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34555555554 3333222 45555555555555444444444444444444444444333333444444444444444
Q ss_pred cccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcccc
Q 001226 564 RLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLA 614 (1119)
Q Consensus 564 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 614 (1119)
+|++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 444333333444444444444444444322223344444444444444444
No 389
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=5.4e-14 Score=162.94 Aligned_cols=154 Identities=17% Similarity=0.205 Sum_probs=74.3
Q ss_pred ccccCCCCCcEEEccCCccCCccChhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCC
Q 001226 233 TSLSNCRNLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCN 312 (1119)
Q Consensus 233 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 312 (1119)
.+|.+|++|+++.+..+ ++ .|...+|.++++|+.+++.++ ++.....+|.++++|+.+.+..+ +..+...+|.++.
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 34556666666666432 32 445556666666666666543 44344455555666665555433 3334444555554
Q ss_pred CCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeecc
Q 001226 313 QLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLF 392 (1119)
Q Consensus 313 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~ 392 (1119)
.++......... ....+|.++++|+.+.+.++..+ .....|.++.+|+.+++..| ++.+....|.++..|+.+.+.
T Consensus 141 ~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPEGVTV--IGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCccccc--cchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 333322222211 22344555555555555443222 33444555555555555544 332333445555555555544
Q ss_pred Cc
Q 001226 393 NN 394 (1119)
Q Consensus 393 ~N 394 (1119)
.+
T Consensus 217 ~~ 218 (394)
T 4fs7_A 217 NS 218 (394)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 390
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=7e-14 Score=161.98 Aligned_cols=196 Identities=14% Similarity=0.095 Sum_probs=94.9
Q ss_pred hhhhhcCCCccEEEcCCCccCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCC
Q 001226 257 PWIFKGLLQLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLS 336 (1119)
Q Consensus 257 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 336 (1119)
..+|.++.+|+.+.+.++- ......+|.++.+|+.+++..+ ++.+...+|.++..|+.+.+..+... +...+....
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~ 230 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence 3345555555555554332 2234445555555555555544 44444555555555555555444322 222333345
Q ss_pred CCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEee
Q 001226 337 SLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALY 416 (1119)
Q Consensus 337 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 416 (1119)
+|+.+.+..+. +......|.++..|+.+.+..+... .....|..+..++.+....+.+. ...|..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred CCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccc
Confidence 55555554332 2233445555666666666555433 44445555566665555544332 2345555666666654
Q ss_pred cccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceecc
Q 001226 417 NNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDL 464 (1119)
Q Consensus 417 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 464 (1119)
++ ++.....+|.++++|+.+++..+ ++ .+....+..+.+|+.+++
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECC
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEE
Confidence 43 44344455556666666655433 33 233333333444444443
No 391
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.4e-16 Score=165.54 Aligned_cols=151 Identities=21% Similarity=0.266 Sum_probs=90.5
Q ss_pred ccceEEeccCCcccCCCCC------ccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhccc
Q 001226 553 SNLTMLDFSENRLSGSIPS------ELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEK 626 (1119)
Q Consensus 553 ~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 626 (1119)
..++.++++.|.++|.+|. .|.++++|++|+|++|++.+ +| .+..+++|+.|+|++|+++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444444443 66666666666666666664 55 6666666666666666666 45666666666
Q ss_pred CCeeEccCccCccCCCccccccccccEeecCCcccCCCccccchhhccccceeeeccccccCCcc-cccccccccceeec
Q 001226 627 MQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFDGSIPCSLSKLHHFSSILNVSNNKLSGKIP-ECLGNLDKLQILDL 705 (1119)
Q Consensus 627 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~~~~L~ls~N~l~~~~p-~~~~~l~~L~~L~L 705 (1119)
|++|+|++|++++ +| .+..+++|+.|+|++|.++ +..+ ..+..+++|++|++
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-------------------------~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-------------------------NWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-------------------------CHHHHHHHTTTTTCSEEEE
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-------------------------chhHHHHHhcCCCCCEEEe
Confidence 6666666666664 33 4556666665554444443 2111 35666777777777
Q ss_pred cCceecccCCcc----------ccccccceEEeccccccc
Q 001226 706 SSNSFSGEIPTE----------VNNMVSLYFVNISFNHFS 735 (1119)
Q Consensus 706 s~N~l~g~ip~~----------~~~~~~l~~l~ls~N~~~ 735 (1119)
++|++++.+|.. +..+++|+.+| +|.++
T Consensus 148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777666553 66677777766 55554
No 392
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.6e-16 Score=165.16 Aligned_cols=92 Identities=21% Similarity=0.256 Sum_probs=39.3
Q ss_pred cccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCC-hhhhhccc
Q 001226 548 VFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIP-SEVISLEK 626 (1119)
Q Consensus 548 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~ 626 (1119)
.+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++++ +| .+..+++|++|+|++|++++..+ ..+..+++
T Consensus 65 ~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~ 141 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141 (198)
T ss_dssp CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCC
Confidence 3344444444444444444 334444444444444444444442 22 34444444444444444442111 23444444
Q ss_pred CCeeEccCccCccCCC
Q 001226 627 MQSLSLQENNLSGAIP 642 (1119)
Q Consensus 627 L~~L~L~~N~l~~~~p 642 (1119)
|++|++++|++++.+|
T Consensus 142 L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 142 LEDLLLAGNPLYNDYK 157 (198)
T ss_dssp CSEEEECSCHHHHHHH
T ss_pred CCEEEecCCccccccc
Confidence 4444444444444333
No 393
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.52 E-value=1.1e-14 Score=163.47 Aligned_cols=131 Identities=17% Similarity=0.130 Sum_probs=95.7
Q ss_pred hhCCceeeecCCccEEEEEeCCCceEEEEEecccccc------------------c--------HHHHHHHHhhcCCCCE
Q 001226 836 ATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSET------------------N--------FDVEIRTLSLVRHRNI 889 (1119)
Q Consensus 836 ~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~------------------~--------~~~E~~~l~~l~h~ni 889 (1119)
|..+++||+|+||.||+|.+.. |+.||||+++.... . ..+|...+.++.+.++
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~-G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEK-GKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTT-CCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEecCEeeeCCceEEEEEECCC-CCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5567899999999999999865 89999998742210 0 1235555666544333
Q ss_pred E--EEeeeeecCCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeC
Q 001226 890 L--RIVGSCTKDEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLD 967 (1119)
Q Consensus 890 v--~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~ 967 (1119)
. ..++. ...++||||++|+++.++... .....++.|++.++.|+|+. |||||||||.|||++
T Consensus 176 ~vp~p~~~----~~~~LVME~i~G~~L~~l~~~---------~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~ 239 (397)
T 4gyi_A 176 PVPEPIAQ----SRHTIVMSLVDALPMRQVSSV---------PDPASLYADLIALILRLAKH---GLIHGDFNEFNILIR 239 (397)
T ss_dssp SCCCEEEE----ETTEEEEECCSCEEGGGCCCC---------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE
T ss_pred CCCeeeec----cCceEEEEecCCccHhhhccc---------HHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEe
Confidence 1 12221 234799999999888665432 12356889999999999998 999999999999998
Q ss_pred CCC----------ceEEEeccccccc
Q 001226 968 SEL----------EPKIGDFGMSKLI 983 (1119)
Q Consensus 968 ~~~----------~vkl~DfGla~~~ 983 (1119)
+++ .+.|+||+-+...
T Consensus 240 ~dgd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 240 EEKDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp EEECSSCTTSEEEEEEECCCTTCEET
T ss_pred CCCCcccccccccceEEEEeCCcccC
Confidence 876 3899999977644
No 394
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=1.9e-14 Score=146.27 Aligned_cols=104 Identities=17% Similarity=0.190 Sum_probs=48.4
Q ss_pred cceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCCh--hhhhcccCCeeE
Q 001226 554 NLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPS--EVISLEKMQSLS 631 (1119)
Q Consensus 554 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~ 631 (1119)
+|++|+|++|+|++. ..|.++++|++|+|++|++++..|..+..+++|++|+|++|+++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444432 34444445555555555554322233344555555555555553 2333 444455555555
Q ss_pred ccCccCccCCCcc----ccccccccEeecCCccc
Q 001226 632 LQENNLSGAIPDA----FSSVQSLFELQLGSNIF 661 (1119)
Q Consensus 632 L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l 661 (1119)
+++|.++ .+|.. +..+++|+.||+++|..
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5555554 23332 45555555555555543
No 395
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=2.6e-14 Score=145.34 Aligned_cols=134 Identities=16% Similarity=0.109 Sum_probs=98.5
Q ss_pred cccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccc
Q 001226 500 EIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENL 579 (1119)
Q Consensus 500 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 579 (1119)
.+.++++|+.|++++|.++. +|......++|++|++++|++++. ..+..+++|++|+|++|+|++..|..|.++++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 35667788888888888874 354333344888888888888754 567778888888888888875444445778888
Q ss_pred cEEEcccCcccCcCCc--ccccCCCCcEEeccCccccccCChh----hhhcccCCeeEccCccCc
Q 001226 580 QILRLSANKLDGRIPY--ELGKCTKMIKLDLSDNYLAGSIPSE----VISLEKMQSLSLQENNLS 638 (1119)
Q Consensus 580 ~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~ 638 (1119)
+.|+|++|++. .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|.+.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888885 5665 6777888888888888887 45654 777888888888888776
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=2.8e-13 Score=136.56 Aligned_cols=107 Identities=28% Similarity=0.356 Sum_probs=79.3
Q ss_pred ceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccC
Q 001226 555 LTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQE 634 (1119)
Q Consensus 555 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 634 (1119)
.+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777777776 4666554 6777777777777766677777777888888888887766666667777888888888
Q ss_pred ccCccCCCccccccccccEeecCCcccCCC
Q 001226 635 NNLSGAIPDAFSSVQSLFELQLGSNIFDGS 664 (1119)
Q Consensus 635 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 664 (1119)
|+|++..|..|..+++|+.|+|++|.++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888876666788888888888877777643
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=4.2e-13 Score=135.77 Aligned_cols=104 Identities=24% Similarity=0.335 Sum_probs=68.8
Q ss_pred eEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCc
Q 001226 556 TMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQEN 635 (1119)
Q Consensus 556 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 635 (1119)
+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 5555554 56666777777776655666666777777777777776544445566777777777777
Q ss_pred cCccCCCccccccccccEeecCCcccC
Q 001226 636 NLSGAIPDAFSSVQSLFELQLGSNIFD 662 (1119)
Q Consensus 636 ~l~~~~p~~~~~l~~L~~L~L~~N~l~ 662 (1119)
+|++..+..|..+++|+.|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777555555777777777777777665
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=6.3e-13 Score=133.97 Aligned_cols=105 Identities=23% Similarity=0.265 Sum_probs=68.3
Q ss_pred eeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCcc
Q 001226 533 FLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNY 612 (1119)
Q Consensus 533 ~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 612 (1119)
.+++++|+++. +|..+ .++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+
T Consensus 13 ~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 44444444442 44333 2566777777777776666677777777777777777775555556677777777777777
Q ss_pred ccccCChhhhhcccCCeeEccCccCccC
Q 001226 613 LAGSIPSEVISLEKMQSLSLQENNLSGA 640 (1119)
Q Consensus 613 l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 640 (1119)
|++..|..+..+++|+.|+|++|.+++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7765555667777777777777777643
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=7.8e-13 Score=133.77 Aligned_cols=105 Identities=24% Similarity=0.291 Sum_probs=72.5
Q ss_pred ceeeccCcccCCCCCccccccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCc
Q 001226 532 SFLDVRGNLLQGSIPPVFGFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDN 611 (1119)
Q Consensus 532 ~~L~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 611 (1119)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|++|||++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555554 3454443 66777777777777666777777777777777777777554555677777777777777
Q ss_pred cccccCChhhhhcccCCeeEccCccCcc
Q 001226 612 YLAGSIPSEVISLEKMQSLSLQENNLSG 639 (1119)
Q Consensus 612 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 639 (1119)
+|++..+..+..+++|++|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7775555557777777777777777774
No 400
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=3.7e-11 Score=138.98 Aligned_cols=113 Identities=13% Similarity=0.206 Sum_probs=61.6
Q ss_pred ccChhhhhcCC-CccEEEcCCCccCCCcchhhcCCCCCceeeecccc---ccccCcccccCCCCCcEEEccccccccccC
Q 001226 254 AISPWIFKGLL-QLEVLYLDDNNLEGQIPETLWGLENLQKLVLSANK---LNGTISGQISHCNQLQVIALSRNNLVGQIP 329 (1119)
Q Consensus 254 ~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 329 (1119)
.|...+|.++. .|+.+.+-++ ++.....+|.++++|+.+.+..|. ++.+...+|..+.+|+.+.+..+ ++....
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 34556666653 4777777543 555556667777777777766653 44455556666666665555433 332334
Q ss_pred cccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEccc
Q 001226 330 RSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQH 369 (1119)
Q Consensus 330 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 369 (1119)
.+|.++.+|+.+.+..+. +......|..+.+|+.+.+..
T Consensus 131 ~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhhccccccccccee-eeecccceecccccccccccc
Confidence 455555555555554332 223344455555555555544
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=8.4e-11 Score=136.02 Aligned_cols=330 Identities=11% Similarity=0.130 Sum_probs=154.1
Q ss_pred cccCCC-CCcEEEccCCccCCccChhhhhcCCCccEEEcCCCc---cCCCcchhhcCCCCCceeeeccccccccCccccc
Q 001226 234 SLSNCR-NLVEFSASSNNFGGAISPWIFKGLLQLEVLYLDDNN---LEGQIPETLWGLENLQKLVLSANKLNGTISGQIS 309 (1119)
Q Consensus 234 ~l~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 309 (1119)
+|.+++ .|+++.+..+ ++ .|...+|.++.+|+.+.+.+|. ++.....+|.++.+|+.+.+..+ ++.+...+|.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 455553 3666666543 32 4556666666666666666542 44445556666666666665543 4445556666
Q ss_pred CCCCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhccccccee
Q 001226 310 HCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNLAKLEVL 389 (1119)
Q Consensus 310 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L 389 (1119)
.+.+|+.+.+..+ +.......|.++.+|+.+.+.++ ++.....+|.+ .+|+.+.+..+-.. ....+|..+.+++..
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcccccee
Confidence 6666666666543 23244455666666666666544 33233344433 45666655544322 333444555555544
Q ss_pred eccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceecccccee
Q 001226 390 YLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSF 469 (1119)
Q Consensus 390 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 469 (1119)
....+.........+........-. ..+.....+..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-------------------------------- 247 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYAL-----------IRYPSQREDPAF-------------------------------- 247 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEE-----------EECCTTCCCSEE--------------------------------
T ss_pred cccccccccccceeecccccccccc-----------cccccccccceE--------------------------------
Confidence 4433332211100000000000000 000000111111
Q ss_pred eCccCCccccccccceeeccCccccCCCCccccccccccEEEeccCccccCCCccccCCCCcceeeccCcccCCCCCccc
Q 001226 470 YGPIPANICVGTNLFVLVLGNNRFNGSFPIEIGKCSSLRRVILSNNLLQGSLPATLERNPGVSFLDVRGNLLQGSIPPVF 549 (1119)
Q Consensus 470 ~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 549 (1119)
.+. +.++..-..+|.++++|+.+.+.++... .....|..+++|+.+.+. +.++..-...|
T Consensus 248 -----------------~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF 307 (394)
T 4gt6_A 248 -----------------KIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVF 307 (394)
T ss_dssp -----------------ECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTT
T ss_pred -----------------EcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceee
Confidence 111 0111111223444444444444433222 333444555555555553 23333333456
Q ss_pred cccccceEEeccCCcccCCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCe
Q 001226 550 GFWSNLTMLDFSENRLSGSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQS 629 (1119)
Q Consensus 550 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 629 (1119)
..+++|+.++|..+ ++..-..+|.++.+|+.+.|..+ ++..-..+|.++++|+.+++.+|.... ..+.....|+.
T Consensus 308 ~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~ 382 (394)
T 4gt6_A 308 AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQN 382 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--
T ss_pred cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCE
Confidence 66667777777654 44344556777777777777544 543334567777777777777765431 34555566777
Q ss_pred eEccCccCc
Q 001226 630 LSLQENNLS 638 (1119)
Q Consensus 630 L~L~~N~l~ 638 (1119)
+.+..|.+.
T Consensus 383 i~i~~~~~~ 391 (394)
T 4gt6_A 383 LPVAPGSID 391 (394)
T ss_dssp ---------
T ss_pred EEeCCCCEE
Confidence 776665543
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=5.5e-14 Score=160.44 Aligned_cols=191 Identities=17% Similarity=0.110 Sum_probs=89.4
Q ss_pred CcccEEEcCCCcccCCCCccccc-----CCCccEEEcccccccccCCcccc-ccCccCEEEccCccccCCCCcccccccc
Q 001226 96 QHLLSLDLSGNEFTGSIPKQLGN-----CGQLKTLLLNDNRFQGSIPPEIF-KLKRLSWLDLGYNSLSGKIPPQVSLCYS 169 (1119)
Q Consensus 96 ~~l~~L~Ls~n~~~~~~~~~l~~-----l~~L~~L~L~~n~i~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 169 (1119)
++|++|+|++|.++......+.. .++|++|+|++|.+++.....+. .+++|++|||++|.+++.....++..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~-- 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL-- 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH--
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH--
Confidence 45666666666665432222222 24566666666665543333332 24555566666665543322222110
Q ss_pred cceeeecccccccccCccC-CCcccccEEEeccccccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccC
Q 001226 170 LESIGFHNNFLNGELPNDI-CSLPKLKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASS 248 (1119)
Q Consensus 170 L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~ 248 (1119)
+ ...++|++|+|++|.|+.... ..++..+..+++|++|+|++
T Consensus 150 ------------------L~~~~~~L~~L~Ls~n~l~~~~~-------------------~~l~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 150 ------------------LLHDQCQITTLRLSNNPLTAAGV-------------------AVLMEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp ------------------HHSTTCCCCEEECCSSCCHHHHH-------------------HHHHHHHHTCSSCCEEECTT
T ss_pred ------------------HHhcCCccceeeCCCCCCChHHH-------------------HHHHHHHhcCCCcCEEeCCC
Confidence 0 123455555555555542110 12233444555555555555
Q ss_pred CccCCcc---ChhhhhcCCCccEEEcCCCccCCCc----chhhcCCCCCceeeeccccccccCcccccCCC-----CCcE
Q 001226 249 NNFGGAI---SPWIFKGLLQLEVLYLDDNNLEGQI----PETLWGLENLQKLVLSANKLNGTISGQISHCN-----QLQV 316 (1119)
Q Consensus 249 n~i~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~ 316 (1119)
|.+++.. ....+...++|++|+|++|.|++.. +.++...++|++|+|++|.|++.....+..+. .|+.
T Consensus 193 N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~ 272 (372)
T 3un9_A 193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272 (372)
T ss_dssp SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEE
T ss_pred CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchh
Confidence 5554221 1233444556666666666665432 23334456677777777766654444443321 1555
Q ss_pred EE--ccccccc
Q 001226 317 IA--LSRNNLV 325 (1119)
Q Consensus 317 L~--Ls~N~l~ 325 (1119)
+. +..|.+.
T Consensus 273 l~~ll~~~~~~ 283 (372)
T 3un9_A 273 VVSLTEGTAVS 283 (372)
T ss_dssp ECCCC----CH
T ss_pred hHhhhcCCccC
Confidence 55 5555544
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=7e-14 Score=159.56 Aligned_cols=187 Identities=17% Similarity=0.097 Sum_probs=120.1
Q ss_pred CCccEEEcccccccccCCcccccc-----CccCEEEccCccccCCCCcccccccccceeeecccccccccCccCC-Cccc
Q 001226 120 GQLKTLLLNDNRFQGSIPPEIFKL-----KRLSWLDLGYNSLSGKIPPQVSLCYSLESIGFHNNFLNGELPNDIC-SLPK 193 (1119)
Q Consensus 120 ~~L~~L~L~~n~i~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~ 193 (1119)
++|++|+|++|++++.....+... ++|++|||++|.++ +.....+. .+++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~------------------------~~~~~~l~~~L~~ 127 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD------------------------PAGLRTLLPVFLR 127 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC------------------------HHHHHHTHHHHHT
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC------------------------HHHHHHHHHHHHh
Confidence 456666666666654433333322 45555555555554 33222222 3567
Q ss_pred ccEEEeccccccccCCCCCccccceeeeeeccccccCccccc-cCCCCCcEEEccCCccCCcc---ChhhhhcCCCccEE
Q 001226 194 LKSLYLNTNNLTGLLPEFPNSCAILHLLIHENDFVGSLPTSL-SNCRNLVEFSASSNNFGGAI---SPWIFKGLLQLEVL 269 (1119)
Q Consensus 194 L~~L~L~~n~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l-~~l~~L~~L~l~~n~i~~~~---~~~~~~~l~~L~~L 269 (1119)
|++|+|++|+|+..... .+...+ ...++|++|++++|.+++.. ....+..+++|++|
T Consensus 128 L~~L~Ls~n~l~~~~~~-------------------~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L 188 (372)
T 3un9_A 128 ARKLGLQLNSLGPEACK-------------------DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188 (372)
T ss_dssp EEEEECCSSCCCHHHHH-------------------HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEE
T ss_pred ccHhhcCCCCCCHHHHH-------------------HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEE
Confidence 88888888887643211 122233 34678999999999987432 23345778999999
Q ss_pred EcCCCccCCCc----chhhcCCCCCceeeeccccccccC----cccccCCCCCcEEEccccccccccCcccCCC---C--
Q 001226 270 YLDDNNLEGQI----PETLWGLENLQKLVLSANKLNGTI----SGQISHCNQLQVIALSRNNLVGQIPRSVGNL---S-- 336 (1119)
Q Consensus 270 ~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~-- 336 (1119)
+|++|+|++.. ++.+...++|++|+|++|.|++.. ...+..++.|++|+|++|.|++.....+..+ .
T Consensus 189 ~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~ 268 (372)
T 3un9_A 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEG 268 (372)
T ss_dssp ECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC-----
T ss_pred eCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCc
Confidence 99999998643 566778899999999999998643 3455678999999999999986555444333 2
Q ss_pred CCCeEE--ccCCccc
Q 001226 337 SLNSLL--LFNNRLQ 349 (1119)
Q Consensus 337 ~L~~L~--L~~N~l~ 349 (1119)
.|+.+. +..|.+.
T Consensus 269 ~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 269 GARVVVSLTEGTAVS 283 (372)
T ss_dssp -CEEECCCC----CH
T ss_pred cchhhHhhhcCCccC
Confidence 266776 6666665
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=2.8e-11 Score=137.58 Aligned_cols=102 Identities=22% Similarity=0.203 Sum_probs=60.0
Q ss_pred EeccCC-cccCCCCCccCCcccccEEEccc-CcccCcCCcccccCCCCcEEeccCccccccCChhhhhcccCCeeEccCc
Q 001226 558 LDFSEN-RLSGSIPSELGNLENLQILRLSA-NKLDGRIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLEKMQSLSLQEN 635 (1119)
Q Consensus 558 L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 635 (1119)
++++++ +|+ .+|. |..+++|+.|+|++ |+|.+..|..|..+++|+.|+|++|+|++.+|..|..|++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 555 3555 55566666666664 6665544555666666666666666666555556666666666666666
Q ss_pred cCccCCCccccccccccEeecCCcccC
Q 001226 636 NLSGAIPDAFSSVQSLFELQLGSNIFD 662 (1119)
Q Consensus 636 ~l~~~~p~~~~~l~~L~~L~L~~N~l~ 662 (1119)
+|++..|..|..++ |+.|+|++|.|.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66655455555444 666666666655
No 405
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=9.8e-11 Score=133.01 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=80.1
Q ss_pred eEEccCC-cccCCCCCCCCCCCCCcEEEccc-CcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeec
Q 001226 340 SLLLFNN-RLQGTLPPELGNCGSLVDLRLQH-NFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYN 417 (1119)
Q Consensus 340 ~L~L~~N-~l~~~~~~~l~~l~~L~~L~L~~-N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 417 (1119)
.++++++ +|+ .+|. +..+++|++|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566665 666 3555 66666777777764 777666666677777777777777777777777777777777777777
Q ss_pred ccccccCCccccCCCCcCEEEccCccCcccchhhhhccCCccceeccccceeeCc
Q 001226 418 NRLTGRIPPDITRLRNLQFLSLAHNHLTGEVALELGKHFPYLSRLDLTGNSFYGP 472 (1119)
Q Consensus 418 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 472 (1119)
|+|++..+..|..++ |+.|+|++|++........+..+.......+..+.++..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~ 143 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCH 143 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCS
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCC
Confidence 777754444455444 788888888777544433333332223333333444433
No 406
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.06 E-value=6.6e-09 Score=119.40 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=74.6
Q ss_pred CcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCCCCcEEEcccCcCcccCchhhhcc
Q 001226 304 ISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCGSLVDLRLQHNFIGGTIPPEICNL 383 (1119)
Q Consensus 304 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~l~~l 383 (1119)
....+..+..|+.+.+..+ +.......|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|.++
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence 3444555555555555433 22233445555666666666544 33344455666666666666443 333444456666
Q ss_pred cccceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCCCCcCEEEccCc
Q 001226 384 AKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRLRNLQFLSLAHN 442 (1119)
Q Consensus 384 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 442 (1119)
++|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.....+|.++++|+.+.+..+
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 66666666666665555566666666666666543 44344556666666666666543
No 407
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.05 E-value=3.1e-10 Score=123.33 Aligned_cols=137 Identities=12% Similarity=0.077 Sum_probs=107.7
Q ss_pred HhhCCceeeecCCccEEEEEeCCCceEEEEEeccc----ccccHHHHHHHHhhcC-CCCEEEEeeeeecCCceEEEEecc
Q 001226 835 RATEGRIIGKGKHGTVYRTLSNNSRKHWAVKKLNR----SETNFDVEIRTLSLVR-HRNILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 835 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~----~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~e~~ 909 (1119)
.|+.....+.|+.+.||++... ++.+++|+... ....+.+|+.+++.+. +..+.++++++.+.+..|+||||+
T Consensus 15 ~~~~~~~~~g~s~~~v~~~~~~--~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i 92 (263)
T 3tm0_A 15 KYRCVKDTEGMSPAKVYKLVGE--NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEA 92 (263)
T ss_dssp TSEEEECCSCCSSSEEEEEECS--SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECC
T ss_pred cceeEeeccCCCCCeEEEEECC--CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEec
Confidence 4555566788888999998754 57899999853 3457899999999885 677888999988888899999999
Q ss_pred CCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---------------------------------------
Q 001226 910 PGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDC--------------------------------------- 950 (1119)
Q Consensus 910 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--------------------------------------- 950 (1119)
+|.++.+.+... .....++.+++++++.||+..
T Consensus 93 ~G~~l~~~~~~~--------~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (263)
T 3tm0_A 93 DGVLCSEEYEDE--------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPF 164 (263)
T ss_dssp SSEEHHHHCCTT--------TCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSS
T ss_pred CCeehhhccCCc--------ccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccC
Confidence 999998763211 123467889999999999811
Q ss_pred -----------------CCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 951 -----------------VPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 951 -----------------~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
.+.++|+|++|.||+++++..+.|+||+.+.
T Consensus 165 ~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 165 KDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp SSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred CCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 1358999999999999876556799999765
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=2.7e-08 Score=114.23 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=73.4
Q ss_pred chhhcCCCCCceeeeccccccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccCCcccCCCCCCCCCCC
Q 001226 281 PETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFNNRLQGTLPPELGNCG 360 (1119)
Q Consensus 281 p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~ 360 (1119)
..++....+|+.+.+..+ +..+...+|..+..|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++......|.+++
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 334444555555555433 33344445555555555555443 33333445555555555555433 3323344555555
Q ss_pred CCcEEEcccCcCcccCchhhhcccccceeeccCccccCCCCccccccCcceEEEeecccccccCCccccCC
Q 001226 361 SLVDLRLQHNFIGGTIPPEICNLAKLEVLYLFNNRIEGAIPHQIGRMSKLVELALYNNRLTGRIPPDITRL 431 (1119)
Q Consensus 361 ~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 431 (1119)
+|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.....+|.+.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 6666665555555444455555566666655433 44444455666666666555433 433334445444
No 409
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=9.7e-10 Score=124.10 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=30.7
Q ss_pred CCCCcEEEccCCccCCccChhhhh--cCCCccEEEcCCCccCCCcch----hhcCCCCCceeeeccccccc
Q 001226 238 CRNLVEFSASSNNFGGAISPWIFK--GLLQLEVLYLDDNNLEGQIPE----TLWGLENLQKLVLSANKLNG 302 (1119)
Q Consensus 238 l~~L~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~ 302 (1119)
+++|+.|++.+|.+++......+. .+++|++|+|+.|.+++..+. .+..+++|+.|+|++|.|++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 455666666555554322222221 345555556655555543222 22334555555555555543
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=5.9e-10 Score=125.86 Aligned_cols=207 Identities=16% Similarity=0.111 Sum_probs=135.7
Q ss_pred CCceEEEecCCCcccc-cC----ccchhhhccCCcccEEEcCCCccc---------CCCCcccccCCCccEEEccccccc
Q 001226 68 SSSLKALNLSGFGLSG-VL----NNSISYICKNQHLLSLDLSGNEFT---------GSIPKQLGNCGQLKTLLLNDNRFQ 133 (1119)
Q Consensus 68 ~~~v~~l~l~~~~l~~-~~----~~~~~~~~~l~~l~~L~Ls~n~~~---------~~~~~~l~~l~~L~~L~L~~n~i~ 133 (1119)
..+|+.|.+...++.| .. +...+.+..+++|+.|.+..+.+. +.++..+..+++|+.|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3468888888776653 21 122333556889999999765431 134455678899999999988311
Q ss_pred ccCCccccccCccCEEEccCccccCCCCcccc--cccccceeeecc--ccccccc-C----ccC--CCcccccEEEeccc
Q 001226 134 GSIPPEIFKLKRLSWLDLGYNSLSGKIPPQVS--LCYSLESIGFHN--NFLNGEL-P----NDI--CSLPKLKSLYLNTN 202 (1119)
Q Consensus 134 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~--n~l~~~~-~----~~l--~~l~~L~~L~L~~n 202 (1119)
.++. + .+++|++|+|..|.++......++ .+++|++|+|+. |...+.. . ..+ ..+++|++|+|++|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2333 4 388999999999888654444454 689999999863 2221110 1 122 24789999999999
Q ss_pred cccccCCCCCccccceeeeeeccccccCccccccCCCCCcEEEccCCccCCccChh---hhhcCCCccEEEcCCCccCCC
Q 001226 203 NLTGLLPEFPNSCAILHLLIHENDFVGSLPTSLSNCRNLVEFSASSNNFGGAISPW---IFKGLLQLEVLYLDDNNLEGQ 279 (1119)
Q Consensus 203 ~l~~~~~~~~~~~~l~~l~l~~n~~~~~lp~~l~~l~~L~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~L~~n~l~~~ 279 (1119)
.+++..+. .+. ....+++|++|+|+.|.+++..... .+..+++|+.|+|++|.|++.
T Consensus 263 ~i~~~~~~-------------------~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 263 EEQNVVVE-------------------MFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TTHHHHHH-------------------HHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCchHHHH-------------------HHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 87643211 011 1135789999999999987643222 235679999999999998866
Q ss_pred cchhhcC-CCCCceeeecccc
Q 001226 280 IPETLWG-LENLQKLVLSANK 299 (1119)
Q Consensus 280 ~p~~l~~-l~~L~~L~Ls~N~ 299 (1119)
.-..+.. + ...++++.++
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 5555554 3 3557777766
No 411
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.85 E-value=8e-09 Score=117.73 Aligned_cols=136 Identities=15% Similarity=0.301 Sum_probs=105.2
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEecc--c-----ccccHHHHHHHHhhcC--CCCEEEEeeeeecC---CceEEEEe
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLN--R-----SETNFDVEIRTLSLVR--HRNILRIVGSCTKD---EHGFIVTE 907 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~--~-----~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~lV~e 907 (1119)
+.++.|.++.||+.... +..+++|+.. . ....+.+|+.+++.++ +..+.++++++.+. +..|+|||
T Consensus 44 ~~l~~G~sn~~y~v~~~--~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 44 EQFKGGQSNPTFKLVTP--GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EECCC-CCSCEEEEECS--SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEcCCcccceEEEEEEC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 67899999999998765 3678899876 2 2357889999999997 45578888888766 45799999
Q ss_pred ccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC-------------------------------------
Q 001226 908 YMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDC------------------------------------- 950 (1119)
Q Consensus 908 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------------------------------------- 950 (1119)
|++|..+.+... ..++...+..++.+++++++.||+..
T Consensus 122 ~v~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (359)
T 3dxp_A 122 FVSGRVLWDQSL-----PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPA 196 (359)
T ss_dssp CCCCBCCCCTTC-----TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHH
T ss_pred ecCCeecCCCcc-----ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChH
Confidence 999887743211 13677788899999999999999731
Q ss_pred ------------------CCCeEecCCCCCCeEeCCCCc--eEEEecccccc
Q 001226 951 ------------------VPQIIHRDIKSDNILLDSELE--PKIGDFGMSKL 982 (1119)
Q Consensus 951 ------------------~~~ivH~Dlkp~Nill~~~~~--vkl~DfGla~~ 982 (1119)
.+.++|+|++|.||+++.++. +.|+||+.+..
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 197 MDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 247999999999999998753 68999998864
No 412
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=98.83 E-value=6.4e-09 Score=112.70 Aligned_cols=130 Identities=17% Similarity=0.127 Sum_probs=96.4
Q ss_pred ceee-ecCCccEEEEEeCCCceEEEEEecccc-cccHHHHHHHHhhcCCCC--EEEEeeeeecCCceEEEEeccCCCCHH
Q 001226 840 RIIG-KGKHGTVYRTLSNNSRKHWAVKKLNRS-ETNFDVEIRTLSLVRHRN--ILRIVGSCTKDEHGFIVTEYMPGGTLF 915 (1119)
Q Consensus 840 ~~lG-~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lV~e~~~~gsL~ 915 (1119)
+.++ .|..+.||++... +|+.+++|+.... ...+.+|+.+++.+++.+ +.+++++...++..++||||++|.++.
T Consensus 25 ~~~~~gg~~~~v~~~~~~-~g~~~vlK~~~~~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~ 103 (264)
T 1nd4_A 25 AQQTIGCSDAAVFRLSAQ-GRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL 103 (264)
T ss_dssp EECSCTTSSCEEEEEECT-TSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT
T ss_pred EecccCCCCceEEEEecC-CCCeEEEEeCCcccchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC
Confidence 3454 5556999999653 4678999987543 356889999999986544 456888888778889999999998884
Q ss_pred HhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---------------------------------------------
Q 001226 916 NVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDC--------------------------------------------- 950 (1119)
Q Consensus 916 ~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~--------------------------------------------- 950 (1119)
... .+ ...++.++++.++.||+..
T Consensus 104 --~~~------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (264)
T 1nd4_A 104 --SSH------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFA 172 (264)
T ss_dssp --TSC------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHH
T ss_pred --cCc------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHH
Confidence 211 11 2256777888888888642
Q ss_pred ----------CCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 951 ----------VPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 951 ----------~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
...++|+|++|.||++++++.+.++|||.+.
T Consensus 173 ~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 173 RLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp HHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred HHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1139999999999999877667799999875
No 413
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.77 E-value=4.2e-10 Score=120.27 Aligned_cols=141 Identities=18% Similarity=0.148 Sum_probs=84.0
Q ss_pred CceeeeeeeecCCCceEEEecCC---CcccccCcc-ch--------------------hhhccCCcccE--EEcCCCcc-
Q 001226 56 PCKWSGVSCYNNSSSLKALNLSG---FGLSGVLNN-SI--------------------SYICKNQHLLS--LDLSGNEF- 108 (1119)
Q Consensus 56 ~c~w~gv~C~~~~~~v~~l~l~~---~~l~~~~~~-~~--------------------~~~~~l~~l~~--L~Ls~n~~- 108 (1119)
.|+|.|+.|+....+|..+...+ .++.|.+++ .+ +.+...+.|.. ++++.|..
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~ 156 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRS 156 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHH
T ss_pred HHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHHH
Confidence 48999999997655676655544 334443331 11 11222233333 44455522
Q ss_pred --cCCCCcccccCCCccEEEcccccccc--cCCccccccCccCEEEccCccccCCCCccccccc--ccceeeeccccccc
Q 001226 109 --TGSIPKQLGNCGQLKTLLLNDNRFQG--SIPPEIFKLKRLSWLDLGYNSLSGKIPPQVSLCY--SLESIGFHNNFLNG 182 (1119)
Q Consensus 109 --~~~~~~~l~~l~~L~~L~L~~n~i~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~ 182 (1119)
.+.++....++++|++|+|++|+|++ .+|..+..+++|++|+|++|+|++. ..+..++ +|++|+|++|.+.+
T Consensus 157 ~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 157 CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 21222222467778888888888776 4556666788888888888887754 3444444 77777888777776
Q ss_pred ccCc-------cCCCcccccEEE
Q 001226 183 ELPN-------DICSLPKLKSLY 198 (1119)
Q Consensus 183 ~~~~-------~l~~l~~L~~L~ 198 (1119)
..|. .+..+++|+.||
T Consensus 235 ~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 235 TFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCcchhHHHHHHHHCcccCeEC
Confidence 5542 355677777765
No 414
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.65 E-value=7.4e-09 Score=114.96 Aligned_cols=180 Identities=23% Similarity=0.245 Sum_probs=118.8
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEecccc--cccHHHHHHHHhhcC-CCC--EEEEeeeeecCC---ceEEEEeccCC
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS--ETNFDVEIRTLSLVR-HRN--ILRIVGSCTKDE---HGFIVTEYMPG 911 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lV~e~~~~ 911 (1119)
+.++.|....||++. ..+++|+.... ...+.+|++.++.+. +.. +.+++.....++ ..|+|||+++|
T Consensus 26 ~~~~~G~~n~v~~v~-----~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G 100 (304)
T 3sg8_A 26 EISGEGNDCIAYEIN-----RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKG 100 (304)
T ss_dssp CEEEECSSEEEEEST-----TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCC
T ss_pred EecCCCCcceEEEEC-----CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCC
Confidence 569999999999863 46889987644 356889999998873 322 344454443332 34899999999
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC------------------------------------------
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYD------------------------------------------ 949 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~------------------------------------------ 949 (1119)
.++.+.... .++.+++..++.++++.++.||+.
T Consensus 101 ~~l~~~~~~-----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (304)
T 3sg8_A 101 VPLTPLLLN-----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD 175 (304)
T ss_dssp EECCHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred eECCccccc-----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence 887653321 256677778888888888888861
Q ss_pred -------------CCCCeEecCCCCCCeEeCC--CCceEEEeccccccccCCCCCCcccccccCCCc---cccccc----
Q 001226 950 -------------CVPQIIHRDIKSDNILLDS--ELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGY---IAPENA---- 1007 (1119)
Q Consensus 950 -------------~~~~ivH~Dlkp~Nill~~--~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y---~aPE~~---- 1007 (1119)
..+.++|+|++|.||++++ ...+.++||+.+..-..... .. ....+ ..|+..
T Consensus 176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~D---l~---~~~~~~~~~~~~~~~~~l 249 (304)
T 3sg8_A 176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDND---FI---SLMEDDEEYGMEFVSKIL 249 (304)
T ss_dssp HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHH---HH---TTCCTTTSCCHHHHHHHH
T ss_pred HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHH---HH---HHHhhccccCHHHHHHHH
Confidence 1135899999999999998 45678999998865322100 00 00000 122210
Q ss_pred C--CC--------CCCCcchHHHHHHHHHHHHhCCCCC
Q 001226 1008 Y--ST--------RLTEKSDVYSYGVILFELLFRKMPV 1035 (1119)
Q Consensus 1008 ~--~~--------~~~~~sDvwslG~vl~elltg~~p~ 1035 (1119)
. +. ......+.|++|.++|++.+|+.+|
T Consensus 250 ~~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 250 NHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 0 00 0112268999999999999998775
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=1.6e-08 Score=102.93 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=88.3
Q ss_pred hhccCCcccEEEcCCC-cccC----CCCcccccCCCccEEEcccccccccC----CccccccCccCEEEccCccccCC--
Q 001226 91 YICKNQHLLSLDLSGN-EFTG----SIPKQLGNCGQLKTLLLNDNRFQGSI----PPEIFKLKRLSWLDLGYNSLSGK-- 159 (1119)
Q Consensus 91 ~~~~l~~l~~L~Ls~n-~~~~----~~~~~l~~l~~L~~L~L~~n~i~~~~----p~~l~~l~~L~~L~Ls~n~l~~~-- 159 (1119)
.+...+.|++|+|++| .+.. .+...+...++|++|+|++|+|.+.. ...+...++|++|+|++|.|++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3556788999999998 8864 24556677889999999999987643 34455568899999999998764
Q ss_pred --CCcccccccccceeee--cccccccccCc----cCCCcccccEEEecccccc
Q 001226 160 --IPPQVSLCYSLESIGF--HNNFLNGELPN----DICSLPKLKSLYLNTNNLT 205 (1119)
Q Consensus 160 --~p~~l~~l~~L~~L~L--~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~ 205 (1119)
+...+...++|++|+| ++|.+++.... .+...+.|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456677788999999 88998876544 3444588999999999876
No 416
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=3.4e-08 Score=105.56 Aligned_cols=80 Identities=28% Similarity=0.348 Sum_probs=47.5
Q ss_pred CCcccccEEEcccCcccC--cCCcccccCCCCcEEeccCccccccCChhhhhcc--cCCeeEccCccCccCCCc------
Q 001226 574 GNLENLQILRLSANKLDG--RIPYELGKCTKMIKLDLSDNYLAGSIPSEVISLE--KMQSLSLQENNLSGAIPD------ 643 (1119)
Q Consensus 574 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~------ 643 (1119)
.++++|+.|+|++|+|++ .+|..+..+++|+.|||++|+|++. ..+..+. +|+.|+|++|.+++.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345667777777777765 3445556667777777777777643 3344444 666666666666665542
Q ss_pred -cccccccccEee
Q 001226 644 -AFSSVQSLFELQ 655 (1119)
Q Consensus 644 -~~~~l~~L~~L~ 655 (1119)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245555555544
No 417
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.33 E-value=1e-06 Score=98.33 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=96.4
Q ss_pred CceeeecCCccEEEEEeCCCceEEEEEeccccc--ccHHHHHHHHhhcCC----CCEEEEeeeeecCCceEEEEeccCCC
Q 001226 839 GRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE--TNFDVEIRTLSLVRH----RNILRIVGSCTKDEHGFIVTEYMPGG 912 (1119)
Q Consensus 839 ~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~--~~~~~E~~~l~~l~h----~niv~l~~~~~~~~~~~lV~e~~~~g 912 (1119)
.+.++.|....||+. +..+++|+..... ..+.+|+.+++.+.+ ..+.+++++ +..++||||++|.
T Consensus 42 v~~l~~G~~n~vy~v-----g~~~vlR~~~~~~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme~i~G~ 112 (320)
T 3r70_A 42 LRYLSSGDDSDTFLC-----NEQYVVKVPKRDSVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMKYIKGE 112 (320)
T ss_dssp EEEEEECSSEEEEEE-----TTTEEEEEESSHHHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEECCCCB
T ss_pred EEeCCCCCCceEEEE-----CCEEEEEeCCcHHHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEeecCCc
Confidence 468999999999998 5678899875432 458899999988865 123444444 5668999999998
Q ss_pred CHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC-----------------------------------------
Q 001226 913 TLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCV----------------------------------------- 951 (1119)
Q Consensus 913 sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~----------------------------------------- 951 (1119)
++.+.... .++..+...++.++++.++.||+...
T Consensus 113 ~l~~~~~~-----~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (320)
T 3r70_A 113 RITYEQYH-----KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDEMLE 187 (320)
T ss_dssp CCCHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccc-----cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhcccccccchH
Confidence 88643211 24556667777777777777774422
Q ss_pred -------------------CCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 952 -------------------PQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 952 -------------------~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+.++|+|++|.||+++.+..+.++||+.+..-
T Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 188 HIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp HHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred HHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 24599999999999998666799999988643
No 418
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.29 E-value=2e-06 Score=93.53 Aligned_cols=135 Identities=21% Similarity=0.238 Sum_probs=99.2
Q ss_pred ceeeecCCc-cEEEEEeCCCceEEEEEecccc-cccHHHHHHHHhhcC-CCCEEEEeeeeecCCceEEEEeccCCCCHHH
Q 001226 840 RIIGKGKHG-TVYRTLSNNSRKHWAVKKLNRS-ETNFDVEIRTLSLVR-HRNILRIVGSCTKDEHGFIVTEYMPGGTLFN 916 (1119)
Q Consensus 840 ~~lG~G~fg-~Vy~~~~~~~~~~vavK~~~~~-~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~e~~~~gsL~~ 916 (1119)
+.+..|..| .||+......+..+++|+.... ...+.+|+..++.+. +--|.++++++.+++..++|||+++|.++.+
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~ 109 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQ 109 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEETHHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHH
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCCCCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccccc
Confidence 456667766 5999888777788999987543 346788999998875 3346778888888889999999999988876
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------------------------------------
Q 001226 917 VLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDC---------------------------------------------- 950 (1119)
Q Consensus 917 ~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~---------------------------------------------- 950 (1119)
...... .....++.+++..++.||+..
T Consensus 110 ~~~~~~-------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (272)
T 4gkh_A 110 VLEEYP-------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKE 182 (272)
T ss_dssp HHHHCG-------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHH
T ss_pred cccCCH-------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHH
Confidence 554321 122345556666666666431
Q ss_pred ---------CCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 951 ---------VPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 951 ---------~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
.+.++|+|+.+.||+++.++.+-|+||+.+.
T Consensus 183 l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 183 MHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 1237999999999999987777899999875
No 419
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=1.4e-07 Score=95.90 Aligned_cols=122 Identities=15% Similarity=0.099 Sum_probs=58.6
Q ss_pred cccccCCCCCcEEEccCC-ccCCccC---hhhhhcCCCccEEEcCCCccCCCc----chhhcCCCCCceeeecccccccc
Q 001226 232 PTSLSNCRNLVEFSASSN-NFGGAIS---PWIFKGLLQLEVLYLDDNNLEGQI----PETLWGLENLQKLVLSANKLNGT 303 (1119)
Q Consensus 232 p~~l~~l~~L~~L~l~~n-~i~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~ 303 (1119)
...+...++|++|++++| .+++... ...+...++|++|+|++|+|.+.. .+.+...++|++|+|++|.|++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344555666666666666 5543211 222333455555555555554322 22223334455555555544422
Q ss_pred CcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEc--cCCcccCC----CCCCCCCCCCCcEEEcccCcCc
Q 001226 304 ISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLL--FNNRLQGT----LPPELGNCGSLVDLRLQHNFIG 373 (1119)
Q Consensus 304 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--~~N~l~~~----~~~~l~~l~~L~~L~L~~N~i~ 373 (1119)
... .+...+...++|++|+| ++|.++.. +...+...++|++|+|++|.+.
T Consensus 109 g~~--------------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GIL--------------------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHH--------------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHH--------------------HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 100 12334444555666666 55555532 1223344566777777777664
No 420
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.09 E-value=1e-05 Score=89.35 Aligned_cols=133 Identities=23% Similarity=0.273 Sum_probs=90.5
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEecccc--cccHHHHHHHHhhcCCC---CEEEEeeeee-cCCceEEEEeccCCCC
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS--ETNFDVEIRTLSLVRHR---NILRIVGSCT-KDEHGFIVTEYMPGGT 913 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~--~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lV~e~~~~gs 913 (1119)
+.++.|....||+. ++.+++|+.... ...+.+|+++++.+.+. .+.+++.+.. ..+..++||||++|..
T Consensus 25 ~~l~~G~~n~v~~v-----g~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~ 99 (306)
T 3tdw_A 25 ESLGEGFRNYAILV-----NGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQI 99 (306)
T ss_dssp EEEEECSSEEEEEE-----TTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEE
T ss_pred eecCCCcceeEEEE-----CCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeE
Confidence 56889999999987 467889986532 34678999999998742 3455566553 4566789999999988
Q ss_pred HHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC--------------------------------------------
Q 001226 914 LFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYD-------------------------------------------- 949 (1119)
Q Consensus 914 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-------------------------------------------- 949 (1119)
+.+.... .++..+...++.++++.++.||+.
T Consensus 100 l~~~~~~-----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 100 LGEDGMA-----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp CHHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred Cchhhhh-----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 7653211 123333444444444444444432
Q ss_pred -------------CCCCeEecCCCCCCeEeCC---CCce-EEEecccccc
Q 001226 950 -------------CVPQIIHRDIKSDNILLDS---ELEP-KIGDFGMSKL 982 (1119)
Q Consensus 950 -------------~~~~ivH~Dlkp~Nill~~---~~~v-kl~DfGla~~ 982 (1119)
..+.++|+|++|.||+++. ++.+ .|+||+.+..
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2236799999999999998 4554 8999998763
No 421
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=6.5e-07 Score=88.52 Aligned_cols=83 Identities=11% Similarity=0.025 Sum_probs=47.1
Q ss_pred CccEEEcccccccccCCccccccCccCEEEccCc-cccCCCCcccccc----cccceeeeccc-ccccccCccCCCcccc
Q 001226 121 QLKTLLLNDNRFQGSIPPEIFKLKRLSWLDLGYN-SLSGKIPPQVSLC----YSLESIGFHNN-FLNGELPNDICSLPKL 194 (1119)
Q Consensus 121 ~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l----~~L~~L~L~~n-~l~~~~~~~l~~l~~L 194 (1119)
+|++|||+++.|++.....+..+++|++|+|++| .|++..-..++.+ ++|++|+|++| ++|+.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4555555555555544444555555555555555 2444333344432 35666666665 3666666666677777
Q ss_pred cEEEecccc
Q 001226 195 KSLYLNTNN 203 (1119)
Q Consensus 195 ~~L~L~~n~ 203 (1119)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777773
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.02 E-value=1.1e-05 Score=91.24 Aligned_cols=141 Identities=11% Similarity=0.157 Sum_probs=89.4
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEecccccccHHHHHHHHhhcCCCC--EEEEeeeeecC-CceEEEEeccCCCCHHH
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTLSLVRHRN--ILRIVGSCTKD-EHGFIVTEYMPGGTLFN 916 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~-~~~~lV~e~~~~gsL~~ 916 (1119)
+.++.|....||+... .++.+++|+.... ..+..|+..++.+.... +.++++++... +..|+||||++|.++.+
T Consensus 47 ~~l~gG~~n~~y~v~~--~g~~~vlK~~~~~-~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~G~~l~~ 123 (362)
T 3ovc_A 47 MQLSEGEESRAFSFDV--GGRGYVLRVNSCA-DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVTLQD 123 (362)
T ss_dssp EEEEECSSEEEEEEEE--TTEEEEEEEESCC-HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCCSEETTT
T ss_pred EECCCCCcceEEEEEE--CCcEEEEEeCCch-hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecCCCCccc
Confidence 6789999999999875 3688999988654 36889999999886433 45666665554 66899999999866532
Q ss_pred h------------------hccCCCCC--------------CCCHHHH---------------------HHHHHHHHHHH
Q 001226 917 V------------------LHQNEPRL--------------VLDWNTR---------------------YHIALGIAQGL 943 (1119)
Q Consensus 917 ~------------------l~~~~~~~--------------~l~~~~~---------------------~~i~~~i~~~l 943 (1119)
. ++...... .-.|... ......+....
T Consensus 124 l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 203 (362)
T 3ovc_A 124 LPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVAQALDELM 203 (362)
T ss_dssp SCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHH
Confidence 1 11111000 0011111 01111222223
Q ss_pred HHHHhCC-CCCeEecCCCCCCeEeCCCCceEEEeccccccc
Q 001226 944 SYLHYDC-VPQIIHRDIKSDNILLDSELEPKIGDFGMSKLI 983 (1119)
Q Consensus 944 ~~LH~~~-~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~ 983 (1119)
+++.... .+.++|+|+.|.||+++.++.+.|+||+.+..-
T Consensus 204 ~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 204 LWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred HHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 3332211 146899999999999987777889999988643
No 423
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.02 E-value=1.7e-05 Score=86.55 Aligned_cols=135 Identities=17% Similarity=0.155 Sum_probs=88.5
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCCC---CEEEEeeeeecCCceEEEEeccCCC
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRHR---NILRIVGSCTKDEHGFIVTEYMPGG 912 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lV~e~~~~g 912 (1119)
+.++.|.++.||++...+ |+.+++|+.... ...+..|++.++.+++. .+.+++++. ..++||||++++
T Consensus 21 ~~l~gG~~n~vy~v~~~d-G~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g~ 95 (288)
T 3d1u_A 21 AERGHSHRWHLYRVELAD-GTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDER 95 (288)
T ss_dssp EEEEEETTEEEEEEEETT-SCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCCC
T ss_pred eeeCCcchhheEEEEeCC-CCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEecccC
Confidence 679999999999998754 788999996432 25689999999999865 567777753 368999999998
Q ss_pred CHHH-----------hhccCCCC------------------CCCCHHHHHH--------------------HHHHHHHHH
Q 001226 913 TLFN-----------VLHQNEPR------------------LVLDWNTRYH--------------------IALGIAQGL 943 (1119)
Q Consensus 913 sL~~-----------~l~~~~~~------------------~~l~~~~~~~--------------------i~~~i~~~l 943 (1119)
.+.. -+|..... -.-+|..... ....+-+.+
T Consensus 96 ~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~~~~~~~l~ 175 (288)
T 3d1u_A 96 PPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVRLVEKVL 175 (288)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 7421 12322110 0023332210 011112222
Q ss_pred HHHH----hCCCCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 944 SYLH----YDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 944 ~~LH----~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
..+. ....+.++|+|+.|.||+++. +.+.++|| .+.
T Consensus 176 ~~l~~~l~~~~~~~l~HgD~~~~N~l~~~-~~~~~iD~-~~~ 215 (288)
T 3d1u_A 176 DALDHLAGDPEPPARIHGDLWNGNVLWQD-DGAVVIDP-AAH 215 (288)
T ss_dssp HTHHHHTCSCCCCEEECSCCSGGGEEEET-TEEEECSC-CCE
T ss_pred HHHHHHhcCCCCCcceECCCCcCcEEEeC-CCeEEEcC-CcC
Confidence 3332 223468999999999999988 45889999 554
No 424
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=1.4e-06 Score=86.23 Aligned_cols=87 Identities=7% Similarity=0.005 Sum_probs=68.1
Q ss_pred CcccEEEcCCCcccCCCCcccccCCCccEEEcccc-cccccCCcccccc----CccCEEEccCc-cccCCCCcccccccc
Q 001226 96 QHLLSLDLSGNEFTGSIPKQLGNCGQLKTLLLNDN-RFQGSIPPEIFKL----KRLSWLDLGYN-SLSGKIPPQVSLCYS 169 (1119)
Q Consensus 96 ~~l~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n-~i~~~~p~~l~~l----~~L~~L~Ls~n-~l~~~~p~~l~~l~~ 169 (1119)
.+|++|||+++.+++.--..+..|++|++|+|++| +|++..-..++.+ ++|++|+|++| +|++..-..++.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 36888888888887766666788889999999998 5887766667764 47999999987 488766677888889
Q ss_pred cceeeecccc-ccc
Q 001226 170 LESIGFHNNF-LNG 182 (1119)
Q Consensus 170 L~~L~L~~n~-l~~ 182 (1119)
|++|++++|. +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 9999998873 554
No 425
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.92 E-value=1.6e-05 Score=90.14 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=55.8
Q ss_pred cee-eecCCccEEEEEeC---C---CceEEEEEeccccc-------ccHHHHHHHHhhcC-C--CCEEEEeeeeecC---
Q 001226 840 RII-GKGKHGTVYRTLSN---N---SRKHWAVKKLNRSE-------TNFDVEIRTLSLVR-H--RNILRIVGSCTKD--- 899 (1119)
Q Consensus 840 ~~l-G~G~fg~Vy~~~~~---~---~~~~vavK~~~~~~-------~~~~~E~~~l~~l~-h--~niv~l~~~~~~~--- 899 (1119)
+.| +.|....+|+.... + .++.+++|+..... ..+.+|+.+++.+. + -.+.++++++.++
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 457 78888999987654 1 15678999875432 56889999998885 2 3566777776655
Q ss_pred CceEEEEeccCCCCHHH
Q 001226 900 EHGFIVTEYMPGGTLFN 916 (1119)
Q Consensus 900 ~~~~lV~e~~~~gsL~~ 916 (1119)
+..|+||||++|..+.+
T Consensus 106 g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp SSCEEEEECCCCBCCCB
T ss_pred CCceEEEEecCCCChhh
Confidence 45689999999876643
No 426
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.67 E-value=5.2e-05 Score=85.28 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=81.9
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEecccccccHHHHHHHHhhcCC--CCEEEEeee------eecCCceEEEEeccCC
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTLSLVRH--RNILRIVGS------CTKDEHGFIVTEYMPG 911 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~------~~~~~~~~lV~e~~~~ 911 (1119)
+.++.|..+.||+....+ ..+++|+..........|+.+++.+.. -.+.+++.. ...++..++||||++|
T Consensus 38 ~~l~gG~~n~~~~v~~~~--~~~vlk~~~~~~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i~G 115 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDS--GAVCLKRIHRPEKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWIEG 115 (346)
T ss_dssp EECC----CEEEEEEETT--EEEEEEEECSCHHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECCCC
T ss_pred eeccccccCcEEEEEeCC--CCEEEEecCCCHHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEeecC
Confidence 456667789999987653 458999987655556667777766631 123333331 1245667899999998
Q ss_pred CCHH--------------HhhccCC-----C-C-----CCCCHHHH-------------------------------HHH
Q 001226 912 GTLF--------------NVLHQNE-----P-R-----LVLDWNTR-------------------------------YHI 935 (1119)
Q Consensus 912 gsL~--------------~~l~~~~-----~-~-----~~l~~~~~-------------------------------~~i 935 (1119)
..+. ..+|... + . ....|... ..+
T Consensus 116 ~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (346)
T 2q83_A 116 RPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEIDGF 195 (346)
T ss_dssp BCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 6542 1122110 0 0 01123211 011
Q ss_pred HHHHHHHHHHHHh----------CCCCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 936 ALGIAQGLSYLHY----------DCVPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 936 ~~~i~~~l~~LH~----------~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
...+..++.+|+. .....++|+|+++.||+++.++.+.++||+.+.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 196 IEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 1223345666653 123489999999999999888899999999764
No 427
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.58 E-value=0.00013 Score=83.96 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=47.4
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEeccc-----------ccccHHHHHHHHhhcCC--C-CEEEEeeeeecCCceEEE
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLNR-----------SETNFDVEIRTLSLVRH--R-NILRIVGSCTKDEHGFIV 905 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~-----------~~~~~~~E~~~l~~l~h--~-niv~l~~~~~~~~~~~lV 905 (1119)
+.+|.|..+.||++.....++.|+||.... ..+.+..|++.++.+.. | .+.+++.+ +.+..++|
T Consensus 36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~lv 113 (397)
T 2olc_A 36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV 113 (397)
T ss_dssp EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEEE
Confidence 579999999999997765678899997532 12345779888887742 3 33455543 34456899
Q ss_pred EeccCCC
Q 001226 906 TEYMPGG 912 (1119)
Q Consensus 906 ~e~~~~g 912 (1119)
||++++.
T Consensus 114 mE~l~g~ 120 (397)
T 2olc_A 114 MEDLSHL 120 (397)
T ss_dssp ECCCTTS
T ss_pred EEeCCCc
Confidence 9999764
No 428
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.37 E-value=0.00041 Score=76.19 Aligned_cols=136 Identities=19% Similarity=0.221 Sum_probs=90.6
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEecccc-cccHHHHHHHHhhcC---CCCEEEEeeeeecCCceEEEEeccCCCCHH
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS-ETNFDVEIRTLSLVR---HRNILRIVGSCTKDEHGFIVTEYMPGGTLF 915 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lV~e~~~~gsL~ 915 (1119)
+.++.|....+|+.... ++.+++|+.... ...+..|+..++.+. ...+.+++++...++..++||||+++..+.
T Consensus 42 ~~l~gG~~n~~y~v~~~--~~~~vlK~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~~~~ 119 (312)
T 3jr1_A 42 EKLYSGEMNEIWLINDE--VQTVFVKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKNK 119 (312)
T ss_dssp EEECCSSSSEEEEEESS--SCEEEEEEEEGGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCCCCC
T ss_pred EEeCCccceeeeEEEEC--CCeEEEEeCCcccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCCCCC
Confidence 57899999999998753 577889987543 345788999998884 356788888887778899999999987642
Q ss_pred -----------HhhccCCC--CC-----------------CCCHHHHH---HHHH----------------HHHHH-HHH
Q 001226 916 -----------NVLHQNEP--RL-----------------VLDWNTRY---HIAL----------------GIAQG-LSY 945 (1119)
Q Consensus 916 -----------~~l~~~~~--~~-----------------~l~~~~~~---~i~~----------------~i~~~-l~~ 945 (1119)
..+|.... .. .-+|.+.. ++.. .++.. ...
T Consensus 120 ~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l~~~ 199 (312)
T 3jr1_A 120 QSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADT 199 (312)
T ss_dssp TTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 12233221 00 12454321 1111 11111 223
Q ss_pred HHh-CCCCCeEecCCCCCCeEeCCCCceEEEecc
Q 001226 946 LHY-DCVPQIIHRDIKSDNILLDSELEPKIGDFG 978 (1119)
Q Consensus 946 LH~-~~~~~ivH~Dlkp~Nill~~~~~vkl~DfG 978 (1119)
|.. ...+.++|+|+.+.|++++.++ +.|+|++
T Consensus 200 L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 200 LSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred hccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 321 2246899999999999999887 8899974
No 429
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=3.9e-05 Score=77.28 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=82.4
Q ss_pred hccCCcccEEEcCCC-cccC----CCCcccccCCCccEEEcccccccccCCccc----cccCccCEEEccCccccCCCCc
Q 001226 92 ICKNQHLLSLDLSGN-EFTG----SIPKQLGNCGQLKTLLLNDNRFQGSIPPEI----FKLKRLSWLDLGYNSLSGKIPP 162 (1119)
Q Consensus 92 ~~~l~~l~~L~Ls~n-~~~~----~~~~~l~~l~~L~~L~L~~n~i~~~~p~~l----~~l~~L~~L~Ls~n~l~~~~p~ 162 (1119)
+...+.|++|+|++| .|.. .+.+.+..-+.|++|+|++|+|.+.....| ..-+.|++|+|++|.|.+.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445678999999985 7754 355667777889999999999987644444 4568899999999999865433
Q ss_pred ----ccccccccceeeeccc---ccccc----cCccCCCcccccEEEecccccc
Q 001226 163 ----QVSLCYSLESIGFHNN---FLNGE----LPNDICSLPKLKSLYLNTNNLT 205 (1119)
Q Consensus 163 ----~l~~l~~L~~L~L~~n---~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 205 (1119)
.+..-+.|++|+|++| .+... +.+.+..-+.|+.|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3445567999999865 44543 2344556688999999887654
No 430
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.17 E-value=0.00079 Score=77.86 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=47.3
Q ss_pred CCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCCcccccc--cCCCcccccccCCC---CCCCcchHHHHHHHHH
Q 001226 952 PQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSSTRSAIV--GSLGYIAPENAYST---RLTEKSDVYSYGVILF 1026 (1119)
Q Consensus 952 ~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~~~~~~--gt~~y~aPE~~~~~---~~~~~sDvwslG~vl~ 1026 (1119)
+.++|+|++|.||+++.++ ++++||+.+..-.... ...... -...|.+|+..... ......++......+|
T Consensus 232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~---Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (420)
T 2pyw_A 232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGF---DIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTW 307 (420)
T ss_dssp CEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHH---HHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHH---HHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence 4899999999999999876 9999999887432110 000000 11346666644311 1122355667888888
Q ss_pred HHHhC
Q 001226 1027 ELLFR 1031 (1119)
Q Consensus 1027 elltg 1031 (1119)
+.+++
T Consensus 308 ~~y~~ 312 (420)
T 2pyw_A 308 NLFNK 312 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 431
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.04 E-value=0.0018 Score=72.17 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=75.9
Q ss_pred ceeeecCCcc-EEEEEeCCCceEEEEEeccccc-ccHHHHHHHHhhcCC--CCEEEEeeeeecCCceEEEEeccCCCCHH
Q 001226 840 RIIGKGKHGT-VYRTLSNNSRKHWAVKKLNRSE-TNFDVEIRTLSLVRH--RNILRIVGSCTKDEHGFIVTEYMPGGTLF 915 (1119)
Q Consensus 840 ~~lG~G~fg~-Vy~~~~~~~~~~vavK~~~~~~-~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lV~e~~~~gsL~ 915 (1119)
+.++.|+... +|+.... +++.+++|...... ..+..|+.+++.+.. -.+.+++.+..+.+ ++|||++++..+.
T Consensus 24 ~~l~gg~s~~~~~r~~~~-~~~~~vlk~~~~~~~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~l~ 100 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSP-TGAKAVLMDWSPEEGGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDALFT 100 (333)
T ss_dssp CC--------CCEEEECT-TCCEEEEEECCTTTTCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCBHH
T ss_pred eECCCCCCCceEEEEEcC-CCCeEEEEECCCCCCccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcchH
Confidence 4465565544 6676543 25667788765544 677888888887742 23455666533333 7899999877765
Q ss_pred HhhccCC---------------------CC--CCCCHHHHH-------H-------------HHHHHHHHHHHHHh---C
Q 001226 916 NVLHQNE---------------------PR--LVLDWNTRY-------H-------------IALGIAQGLSYLHY---D 949 (1119)
Q Consensus 916 ~~l~~~~---------------------~~--~~l~~~~~~-------~-------------i~~~i~~~l~~LH~---~ 949 (1119)
+++.... .. ...+..... . ....+...+..+.. .
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~ 180 (333)
T 3csv_A 101 EVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQLE 180 (333)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccc
Confidence 5443211 00 011111100 0 00111222233311 1
Q ss_pred CCCCeEecCCCCCCeEeCCC----CceEEEecccccc
Q 001226 950 CVPQIIHRDIKSDNILLDSE----LEPKIGDFGMSKL 982 (1119)
Q Consensus 950 ~~~~ivH~Dlkp~Nill~~~----~~vkl~DfGla~~ 982 (1119)
....++|+|+.+.||+++.+ +.+.++||+.+..
T Consensus 181 ~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 181 GDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp SCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred CCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 23479999999999999875 6789999998764
No 432
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=96.96 E-value=0.0018 Score=70.63 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=50.9
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEecccc----cccHHHHHHHHhhcCC---CCEEEEeeeeecCCceEEEEeccCCC
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLNRS----ETNFDVEIRTLSLVRH---RNILRIVGSCTKDEHGFIVTEYMPGG 912 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~----~~~~~~E~~~l~~l~h---~niv~l~~~~~~~~~~~lV~e~~~~g 912 (1119)
+.+|.|..+.||+.+..+ |+.|++|+.... ...+..|++.|+.+.- --+.+++++. ..++||||++++
T Consensus 21 ~~~g~G~~~~vyrv~l~D-G~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~l~~~ 95 (288)
T 3f7w_A 21 AERGHSHRWHLYRVELAD-GTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDER 95 (288)
T ss_dssp EEEEEETTEEEEEEEETT-SCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCCC
T ss_pred EecCCCCCeEEEEEEECC-CCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEeeccc
Confidence 678999999999998765 789999987532 2357899999998842 1244455432 347899999876
Q ss_pred CH
Q 001226 913 TL 914 (1119)
Q Consensus 913 sL 914 (1119)
..
T Consensus 96 ~~ 97 (288)
T 3f7w_A 96 PP 97 (288)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 433
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=0.00058 Score=68.71 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=44.4
Q ss_pred hcCCCCCceeeeccccccccC----cccccCCCCCcEEEccccccccc----cCcccCCCCCCCeEEccCCc---ccCC-
Q 001226 284 LWGLENLQKLVLSANKLNGTI----SGQISHCNQLQVIALSRNNLVGQ----IPRSVGNLSSLNSLLLFNNR---LQGT- 351 (1119)
Q Consensus 284 l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~---l~~~- 351 (1119)
+..-+.|+.|+|++|+|.+.. ...+...+.|++|+|++|.|.+. +.+.+..-+.|++|+|++|. +...
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 333444555555555554322 22333445555555555555432 22334445556667766542 2211
Q ss_pred ---CCCCCCCCCCCcEEEcccCcCc
Q 001226 352 ---LPPELGNCGSLVDLRLQHNFIG 373 (1119)
Q Consensus 352 ---~~~~l~~l~~L~~L~L~~N~i~ 373 (1119)
+...+..-+.|+.|+++.|.+.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2233444567777777776654
No 434
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.75 E-value=0.0023 Score=70.18 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=76.4
Q ss_pred CceeeecCCccEEEEEeCCCceEEEEEeccccc---ccHHHHHHHHhhcCCCCE-EEEeeeeecCCceEEEEecc-CCCC
Q 001226 839 GRIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSE---TNFDVEIRTLSLVRHRNI-LRIVGSCTKDEHGFIVTEYM-PGGT 913 (1119)
Q Consensus 839 ~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lV~e~~-~~gs 913 (1119)
.+.++.|....+|+. +.+++|+..... .+..+|+..++.+....+ .+++++. .+..++|+||+ +|.+
T Consensus 23 i~~l~gG~tN~~~~~------~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA------GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE------TTEEEEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee------eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCcc
Confidence 477999999999998 457899885432 345778888887742222 3555443 33457899999 6544
Q ss_pred HHH------------------hhccCCCCC--CCC-HHHHHHHHHH--------------HHHHH----HHHHh-CCCCC
Q 001226 914 LFN------------------VLHQNEPRL--VLD-WNTRYHIALG--------------IAQGL----SYLHY-DCVPQ 953 (1119)
Q Consensus 914 L~~------------------~l~~~~~~~--~l~-~~~~~~i~~~--------------i~~~l----~~LH~-~~~~~ 953 (1119)
+.. -+|...... ... +.....+... +.+.+ ..+.. .....
T Consensus 95 l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 174 (301)
T 3dxq_A 95 MSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLA 174 (301)
T ss_dssp CCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCCCE
T ss_pred CCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCCce
Confidence 421 011111100 011 1111111110 11111 11211 12235
Q ss_pred eEecCCCCCCeEeCCCCceEEEecccccc
Q 001226 954 IIHRDIKSDNILLDSELEPKIGDFGMSKL 982 (1119)
Q Consensus 954 ivH~Dlkp~Nill~~~~~vkl~DfGla~~ 982 (1119)
++|+|+.|.||+ ..++.+.++||..+..
T Consensus 175 l~HgDl~~~Nil-~~~~~~~lID~e~a~~ 202 (301)
T 3dxq_A 175 ACHCDPLCENFL-DTGERMWIVDWEYSGM 202 (301)
T ss_dssp EECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred eeccCCCcCCEE-ECCCCEEEEecccccC
Confidence 899999999999 5667789999998764
No 435
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.65 E-value=0.0017 Score=74.99 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=49.9
Q ss_pred ceeeecCCccEEEEEeCC-------CceEEEEEeccc-cc-ccHHHHHHHHhhcCCCC-EEEEeeeeecCCceEEEEecc
Q 001226 840 RIIGKGKHGTVYRTLSNN-------SRKHWAVKKLNR-SE-TNFDVEIRTLSLVRHRN-ILRIVGSCTKDEHGFIVTEYM 909 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~-------~~~~vavK~~~~-~~-~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lV~e~~ 909 (1119)
+.|+.|....||++.... .++.|++|+... .. ..+..|..+++.+...+ ..++++.+.+ .+|+||+
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e~l 154 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEYI 154 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECCC
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEEEe
Confidence 568889899999998653 257899999854 33 56678999988875323 3566665543 3899999
Q ss_pred CCCCH
Q 001226 910 PGGTL 914 (1119)
Q Consensus 910 ~~gsL 914 (1119)
+|.++
T Consensus 155 ~G~~l 159 (429)
T 1nw1_A 155 PSRPL 159 (429)
T ss_dssp CEEEC
T ss_pred CCccc
Confidence 86443
No 436
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.54 E-value=0.0032 Score=71.01 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=82.9
Q ss_pred ceeeecCCccEEEEEeCC-------CceEEEEEeccc---ccccHHHHHHHHhhcC-CCCEEEEeeeeecCCceEEEEec
Q 001226 840 RIIGKGKHGTVYRTLSNN-------SRKHWAVKKLNR---SETNFDVEIRTLSLVR-HRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~-------~~~~vavK~~~~---~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+.+..|....+|++.... .++.|++|+... ......+|.++++.+. +.-..++++++.+ .+||||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e~ 131 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQY 131 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEEC
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEEE
Confidence 568888899999988642 357899998743 2345668999998874 3223566666554 289999
Q ss_pred cCCCCHHHh-----------------hccCCC--CCCC--CHHHHHHHHHHHHH-------------------HHHHH--
Q 001226 909 MPGGTLFNV-----------------LHQNEP--RLVL--DWNTRYHIALGIAQ-------------------GLSYL-- 946 (1119)
Q Consensus 909 ~~~gsL~~~-----------------l~~~~~--~~~l--~~~~~~~i~~~i~~-------------------~l~~L-- 946 (1119)
++|..+..- +|.... .... -+.++.++..++.. .+..|
T Consensus 132 i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 211 (379)
T 3feg_A 132 IPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRK 211 (379)
T ss_dssp CSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHH
T ss_pred ecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHH
Confidence 988654310 111111 1112 23455555444321 22333
Q ss_pred --HhC-CCCCeEecCCCCCCeEeCCC----CceEEEecccccc
Q 001226 947 --HYD-CVPQIIHRDIKSDNILLDSE----LEPKIGDFGMSKL 982 (1119)
Q Consensus 947 --H~~-~~~~ivH~Dlkp~Nill~~~----~~vkl~DfGla~~ 982 (1119)
... ....++|+|+.+.||+++.+ +.+.++||..+..
T Consensus 212 ~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 212 LLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 221 12368999999999999876 7899999998763
No 437
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.48 E-value=0.0047 Score=71.63 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=48.8
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEecccccc---cHHHHHHHHhhcCCCCE-EEEeeeeecCCceEEEEeccCCCCH
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLNRSET---NFDVEIRTLSLVRHRNI-LRIVGSCTKDEHGFIVTEYMPGGTL 914 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~---~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lV~e~~~~gsL 914 (1119)
+.|+.|....+|++.....+..|++|+...... +..+|..+++.+...++ .++++++.. ..||||++|.++
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~~~----G~v~e~I~G~~l 188 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFFTN----GRIEEFMDGYAL 188 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEETT----EEEEECCCSEEC
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEeCC----eEEEEeeCCccC
Confidence 578889999999998765457899998854322 23689999998864444 566666632 259999987544
No 438
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.47 E-value=0.0029 Score=70.08 Aligned_cols=140 Identities=13% Similarity=0.187 Sum_probs=80.6
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEeccc--ccccHHHHHHHHhhcCCCC--EEEEeeee------ecCCceEEEEecc
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLNR--SETNFDVEIRTLSLVRHRN--ILRIVGSC------TKDEHGFIVTEYM 909 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~--~~~~~~~E~~~l~~l~h~n--iv~l~~~~------~~~~~~~lV~e~~ 909 (1119)
+.++.|....+|+....+ ..+++|+... ....+..|+.+++.+.... +.+++... ...+..++||+|+
T Consensus 28 ~~i~~G~~n~~~~v~~~~--g~~vlk~~~~~~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~~l 105 (322)
T 2ppq_A 28 KGIAEGVENSNFLLHTTK--DPLILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISFL 105 (322)
T ss_dssp EEECC---EEEEEEEESS--CCEEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEECC
T ss_pred eccCCCcccceEEEEeCC--ccEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEEeC
Confidence 457778889999987653 3688998865 4566788888888774222 23333221 1235568999999
Q ss_pred CCCCHHH--------------hhccC----CCC-----CCCCHHHHHH------------HHHHHHHHHHHHHhC----C
Q 001226 910 PGGTLFN--------------VLHQN----EPR-----LVLDWNTRYH------------IALGIAQGLSYLHYD----C 950 (1119)
Q Consensus 910 ~~gsL~~--------------~l~~~----~~~-----~~l~~~~~~~------------i~~~i~~~l~~LH~~----~ 950 (1119)
+|..+.. .+|.. ... ....|..... +...+.+.+++++.. .
T Consensus 106 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~ 185 (322)
T 2ppq_A 106 EGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDL 185 (322)
T ss_dssp CCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCCSS
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCcccC
Confidence 8865311 11211 000 0011222100 011134445555532 1
Q ss_pred CCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 951 VPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 951 ~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
..+++|+|+.+.||++++++.+.++||+.+.
T Consensus 186 ~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 186 PAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp CEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred CcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 2479999999999999887666899999775
No 439
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.24 E-value=0.015 Score=64.44 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=79.2
Q ss_pred ceeeecCCccEEEEEeCCCceEEEEEeccc---ccccHHHHHHHHhhcCCC--CEEEEeee-----eecCCceEEEEecc
Q 001226 840 RIIGKGKHGTVYRTLSNNSRKHWAVKKLNR---SETNFDVEIRTLSLVRHR--NILRIVGS-----CTKDEHGFIVTEYM 909 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~---~~~~~~~E~~~l~~l~h~--niv~l~~~-----~~~~~~~~lV~e~~ 909 (1119)
+.++ |....||+....+ |+.+++|+... ....+..|...++.+... .+++++.. ...++..++||||+
T Consensus 32 ~~l~-g~~n~~y~v~~~~-g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDED-RRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTT-CCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCC-CCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 4566 8888999876543 56789999863 345677788888877422 23444443 11244567899999
Q ss_pred CCCCHH-----Hh---------hcc----CC--CCCCCCHHHH----HHH---------------HHHHHHHHHHHHhC-
Q 001226 910 PGGTLF-----NV---------LHQ----NE--PRLVLDWNTR----YHI---------------ALGIAQGLSYLHYD- 949 (1119)
Q Consensus 910 ~~gsL~-----~~---------l~~----~~--~~~~l~~~~~----~~i---------------~~~i~~~l~~LH~~- 949 (1119)
+|..+. .+ +|. .. .....++... ..+ ...+.+.++.+...
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 875431 00 111 00 0111222111 000 11111223333221
Q ss_pred ---CCCCeEecCCCCCCeEeCCCCceEEEecccccc
Q 001226 950 ---CVPQIIHRDIKSDNILLDSELEPKIGDFGMSKL 982 (1119)
Q Consensus 950 ---~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~ 982 (1119)
....++|+|+++.||+++ + .+.++||+.+..
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 234688999999999999 4 899999987753
No 440
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.23 E-value=0.006 Score=57.25 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=26.6
Q ss_pred EEeccCCccc-CCCCCccCCcccccEEEcccCcccCcCCcccccCCCCcEEeccCccc
Q 001226 557 MLDFSENRLS-GSIPSELGNLENLQILRLSANKLDGRIPYELGKCTKMIKLDLSDNYL 613 (1119)
Q Consensus 557 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 613 (1119)
.++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555553 23443332 2355555555555533334445555555555555554
No 441
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.22 E-value=0.0061 Score=68.94 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=44.7
Q ss_pred ceeeecCCccEEEEEeCC--------CceEEEEEecccccc---cHHHHHHHHhhcCCCC-EEEEeeeeecCCceEEEEe
Q 001226 840 RIIGKGKHGTVYRTLSNN--------SRKHWAVKKLNRSET---NFDVEIRTLSLVRHRN-ILRIVGSCTKDEHGFIVTE 907 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~--------~~~~vavK~~~~~~~---~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lV~e 907 (1119)
+.++.|....+|+..... .++.|++|+...... +...|..+++.+...+ +.++++.. . .++|||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~e 114 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIEE 114 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEEE
Confidence 567888889999987653 126889998864332 3468888888875323 34555543 1 368999
Q ss_pred ccCCCCH
Q 001226 908 YMPGGTL 914 (1119)
Q Consensus 908 ~~~~gsL 914 (1119)
|++|..+
T Consensus 115 ~i~G~~l 121 (369)
T 3c5i_A 115 WLYGDPL 121 (369)
T ss_dssp CCCSEEC
T ss_pred EecCCcC
Confidence 9987543
No 442
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.14 E-value=0.005 Score=57.83 Aligned_cols=56 Identities=25% Similarity=0.358 Sum_probs=37.9
Q ss_pred EEeccCcccc-ccCChhhhhcccCCeeEccCccCccCCCccccccccccEeecCCcccC
Q 001226 605 KLDLSDNYLA-GSIPSEVISLEKMQSLSLQENNLSGAIPDAFSSVQSLFELQLGSNIFD 662 (1119)
Q Consensus 605 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 662 (1119)
.+|.+++.|+ ..+|..+. .+|+.|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777775 23554432 35777777777777666667777777888777777664
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=95.48 E-value=0.014 Score=64.95 Aligned_cols=66 Identities=9% Similarity=0.156 Sum_probs=42.5
Q ss_pred cCCccEEEEEeCCCceEEEEEecccccccHHHHHHHHhhcC---CCCEEEEeee------eecCCceEEEEeccCCCCH
Q 001226 845 GKHGTVYRTLSNNSRKHWAVKKLNRSETNFDVEIRTLSLVR---HRNILRIVGS------CTKDEHGFIVTEYMPGGTL 914 (1119)
Q Consensus 845 G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~------~~~~~~~~lV~e~~~~gsL 914 (1119)
|....||+....+ | .+++|+..... ...|+..++.+. -|.+++.+.. ....+..++||||++|..+
T Consensus 34 g~~N~vy~v~~~~-g-~~vLK~~~~~~--~~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G~~~ 108 (339)
T 3i1a_A 34 DTNAFAYQADSES-K-SYFIKLKYGYH--DEINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHAPNG 108 (339)
T ss_dssp CSSCEEEEEECSS-C-EEEEEEEECSS--CCHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCCCCBT
T ss_pred ccccceEEEEeCC-C-CEEEEEecCcc--chHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccCCCcC
Confidence 3367899987654 4 88999876543 246777776663 2224444432 1234667899999998755
No 444
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=95.26 E-value=0.052 Score=54.76 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=65.0
Q ss_pred CCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccccccCCCCCCc
Q 001226 912 GTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSKLISDSHSSST 991 (1119)
Q Consensus 912 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~~~~~~~~~~~ 991 (1119)
.+|.++|...+. +++++++|.++.|.+.++.-.-.... . ..+=+.|..|++..+|.|.+.+ +.+.
T Consensus 33 vSL~eIL~~~~~--PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~---------- 97 (229)
T 2yle_A 33 LSLEEILRLYNQ--PINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD---------- 97 (229)
T ss_dssp EEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C-------------
T ss_pred ccHHHHHHHcCC--CcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc----------
Confidence 478999987754 69999999999999998877632111 1 1222346889999999887774 2111
Q ss_pred ccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCC
Q 001226 992 RSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRK 1032 (1119)
Q Consensus 992 ~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~ 1032 (1119)
.....+.|||... ...+.+.=|||+|+++|.-+--.
T Consensus 98 ----~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDyg 133 (229)
T 2yle_A 98 ----AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYG 133 (229)
T ss_dssp -------------CCSS-SSSCHHHHHHHHHHHHHHHHTTT
T ss_pred ----ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcC
Confidence 0122466888653 34567888999999999998433
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.24 E-value=0.071 Score=60.23 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=81.1
Q ss_pred ceeeecCCccEEEEEeCC-------CceEEEEEeccccccc----------------------HHHHHHHHhhcC-CCCE
Q 001226 840 RIIGKGKHGTVYRTLSNN-------SRKHWAVKKLNRSETN----------------------FDVEIRTLSLVR-HRNI 889 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~-------~~~~vavK~~~~~~~~----------------------~~~E~~~l~~l~-h~ni 889 (1119)
+.+..|-...+|++.... .++.|.+++.....+. ...|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 567778888999987653 1467889887432211 123888888775 4345
Q ss_pred EEEeeeeecCCceEEEEeccCCCCHH--Hh---------------hccCCC--CCCCC--HHHHHHHHHHHH--------
Q 001226 890 LRIVGSCTKDEHGFIVTEYMPGGTLF--NV---------------LHQNEP--RLVLD--WNTRYHIALGIA-------- 940 (1119)
Q Consensus 890 v~l~~~~~~~~~~~lV~e~~~~gsL~--~~---------------l~~~~~--~~~l~--~~~~~~i~~~i~-------- 940 (1119)
.++++++..+ .|+||++|-+|. ++ +|.... ..... +....++..++.
T Consensus 138 Pkl~~~~~~G----~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQG----RLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETTE----EEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCCC----eEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 5677766432 899999875442 11 111110 11122 233433433221
Q ss_pred --------------HHH----HHHHhC-CCCCeEecCCCCCCeEeCCC------CceEEEeccccc
Q 001226 941 --------------QGL----SYLHYD-CVPQIIHRDIKSDNILLDSE------LEPKIGDFGMSK 981 (1119)
Q Consensus 941 --------------~~l----~~LH~~-~~~~ivH~Dlkp~Nill~~~------~~vkl~DfGla~ 981 (1119)
..+ +++... ....++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 112 223222 22368899999999999876 789999999875
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=93.81 E-value=0.11 Score=59.40 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=48.8
Q ss_pred ceeeecCCccEEEEEeCCC-------ceEEEEEeccccc---ccHHHHHHHHhhcC-CCCEEEEeeeeecCCceEEEEec
Q 001226 840 RIIGKGKHGTVYRTLSNNS-------RKHWAVKKLNRSE---TNFDVEIRTLSLVR-HRNILRIVGSCTKDEHGFIVTEY 908 (1119)
Q Consensus 840 ~~lG~G~fg~Vy~~~~~~~-------~~~vavK~~~~~~---~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~e~ 908 (1119)
+.+..|....+|+...... ++.|++|+..... .+..+|.++++.+. +.-..++++.+. .+.||||
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~ef 151 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIEEF 151 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEEEC
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEEEE
Confidence 5677888899999886531 4778999875432 24578999998885 322345554332 3789999
Q ss_pred cCCCCH
Q 001226 909 MPGGTL 914 (1119)
Q Consensus 909 ~~~gsL 914 (1119)
++|..+
T Consensus 152 I~G~~l 157 (424)
T 3mes_A 152 IDGEPL 157 (424)
T ss_dssp CCSEEC
T ss_pred eCCccC
Confidence 998653
No 447
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=91.46 E-value=0.024 Score=39.56 Aligned_cols=30 Identities=37% Similarity=0.666 Sum_probs=23.3
Q ss_pred CCCcccceeeehhhHHHHHHHHHHHhheee
Q 001226 769 GRGHTRGRLAGIIIGVLLSVALLCALIYIM 798 (1119)
Q Consensus 769 ~~~~~~~~~~~ii~~~~~~v~~~~~~~~~~ 798 (1119)
+++.+.+.++||++|+++.+++++++++++
T Consensus 5 ~~~ls~GaIAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 5 SRGLTGGEIVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceeeeehHHHHHHHHHHHHHHHH
Confidence 345667889999999999888877766544
No 448
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=87.34 E-value=0.79 Score=51.99 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=25.2
Q ss_pred CeEecCCCCCCeEe------CCCCceEEEecccccc
Q 001226 953 QIIHRDIKSDNILL------DSELEPKIGDFGMSKL 982 (1119)
Q Consensus 953 ~ivH~Dlkp~Nill------~~~~~vkl~DfGla~~ 982 (1119)
.++|+|+.+.||++ +++..++++||.+|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 35799999999999 4567799999998863
No 449
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=79.22 E-value=0.31 Score=35.09 Aligned_cols=18 Identities=22% Similarity=0.384 Sum_probs=7.8
Q ss_pred ceeeehhhHHHHHHHHHH
Q 001226 775 GRLAGIIIGVLLSVALLC 792 (1119)
Q Consensus 775 ~~~~~ii~~~~~~v~~~~ 792 (1119)
..|++.++|.++++++++
T Consensus 11 ~~IA~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVA 28 (44)
T ss_dssp SSSTHHHHHHHHHHHHHH
T ss_pred ceEEeehhHHHHHHHHHH
Confidence 345554444434433333
No 450
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=78.61 E-value=0.24 Score=35.47 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=8.9
Q ss_pred ccceeeehhhHHHHH
Q 001226 773 TRGRLAGIIIGVLLS 787 (1119)
Q Consensus 773 ~~~~~~~ii~~~~~~ 787 (1119)
....++++++|++++
T Consensus 10 ~~~~Ia~~vVGvll~ 24 (44)
T 2jwa_A 10 PLTSIISAVVGILLV 24 (44)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHH
Confidence 334577778884433
No 451
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=75.77 E-value=5.6 Score=40.05 Aligned_cols=117 Identities=12% Similarity=0.107 Sum_probs=77.8
Q ss_pred CCCCEEEEeeeeecCCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCe
Q 001226 885 RHRNILRIVGSCTKDEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLSYLHYDCVPQIIHRDIKSDNI 964 (1119)
Q Consensus 885 ~h~niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Ni 964 (1119)
.||+.++. .+-.+++...+.++.-+.+-=...++ ..+...+++++.+|+....++++. +|--+.|+|+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~ik------~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL 110 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDNIK------SFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDEL 110 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGGGG------GSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHHHH------hcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceE
Confidence 58888866 44455556555555543221111222 367789999999999888666644 7888999999
Q ss_pred EeCCCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 001226 965 LLDSELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDP 1037 (1119)
Q Consensus 965 ll~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~ 1037 (1119)
+++.++.+++.-.|+...+ +|. ..+...=.-.+=+++..++.++..|+.
T Consensus 111 ~f~~~~~p~i~~RGik~~l-------------------~P~-----~~~ee~fL~qyKAliiall~~K~~Fe~ 159 (215)
T 4ann_A 111 FFTRDGLPIAKTRGLQNVV-------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSFDA 159 (215)
T ss_dssp EECTTSCEEESCCEETTTB-------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred EEcCCCCEEEEEccCccCC-------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 9999999999977754322 111 122223344677888899999988864
No 452
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=72.21 E-value=0.44 Score=34.22 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=7.6
Q ss_pred ceeeehhhHHHHHHHHHH
Q 001226 775 GRLAGIIIGVLLSVALLC 792 (1119)
Q Consensus 775 ~~~~~ii~~~~~~v~~~~ 792 (1119)
+.+++.++|.++++++++
T Consensus 10 ~aIA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHHHHHHH
Confidence 334444444333333333
No 453
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=61.82 E-value=14 Score=37.23 Aligned_cols=116 Identities=11% Similarity=0.127 Sum_probs=75.4
Q ss_pred CCCCEEEEeeeeecCCceEEEEeccCCCCHHHhhccCCCCCCCCHHHHHHHHHHHHHHHH-HHHhCCCCCeEecCCCCCC
Q 001226 885 RHRNILRIVGSCTKDEHGFIVTEYMPGGTLFNVLHQNEPRLVLDWNTRYHIALGIAQGLS-YLHYDCVPQIIHRDIKSDN 963 (1119)
Q Consensus 885 ~h~niv~l~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~-~LH~~~~~~ivH~Dlkp~N 963 (1119)
.||+. -..+-.+++...+.++.-+++.=...++ ..+...+++++.+|+.... +++ .-+|--+.|+|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~------~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~N 114 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR------KTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPEN 114 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH------TSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH------hcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCce
Confidence 58888 2233355666666666654442233332 2677889999999988776 555 45788899999
Q ss_pred eEeCCCCceEEEeccccccccCCCCCCcccccccCCCcccccccCCCCCCCcchHHHHHHHHHHHHhCCCCCCC
Q 001226 964 ILLDSELEPKIGDFGMSKLISDSHSSSTRSAIVGSLGYIAPENAYSTRLTEKSDVYSYGVILFELLFRKMPVDP 1037 (1119)
Q Consensus 964 ill~~~~~vkl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDvwslG~vl~elltg~~p~~~ 1037 (1119)
++++.++.+++.-.|+-..+ +|. ..+...=.-.+=+++..++.++..|+.
T Consensus 115 L~f~~~~~p~i~hRGi~~~l-------------------pP~-----e~~ee~fl~qyKali~all~~K~~Fe~ 164 (219)
T 4ano_A 115 LMFNRALEPFFLHVGVKESL-------------------PPD-----EWDDERLLREVKATVLALTEGEYRFDE 164 (219)
T ss_dssp EEECTTCCEEESCCEETTTB-------------------SSC-----SCCHHHHHHHHHHHHHHHTTCSSCHHH
T ss_pred EEEeCCCcEEEEEcCCcccC-------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999999987754322 222 112222233566788888888877753
No 454
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=56.70 E-value=1.2 Score=51.31 Aligned_cols=56 Identities=9% Similarity=-0.091 Sum_probs=16.7
Q ss_pred CceeeecCCccEEEEEeCCCceEEEE------Eeccc------ccccHHHHHHHHhhcCCCCEEEEeeeee
Q 001226 839 GRIIGKGKHGTVYRTLSNNSRKHWAV------KKLNR------SETNFDVEIRTLSLVRHRNILRIVGSCT 897 (1119)
Q Consensus 839 ~~~lG~G~fg~Vy~~~~~~~~~~vav------K~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~ 897 (1119)
.+.+| ||.||+|.......+||| |..+. ....+.+|+.+++..+|||+++.+++..
T Consensus 147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 35566 999999998765568888 65542 1234677888888889999998877654
No 455
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=55.29 E-value=3.1 Score=27.95 Aligned_cols=27 Identities=33% Similarity=0.661 Sum_probs=21.2
Q ss_pred cccceeeehhhHHHHHHHHHHHhheee
Q 001226 772 HTRGRLAGIIIGVLLSVALLCALIYIM 798 (1119)
Q Consensus 772 ~~~~~~~~ii~~~~~~v~~~~~~~~~~ 798 (1119)
.+.+.++||+++-+++.+++++++|++
T Consensus 4 L~~gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 4 VSPGVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceEEeEeHHHHHHHHHHHHHHhhe
Confidence 346788999999999888887776654
No 456
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.87 E-value=32 Score=29.81 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=18.8
Q ss_pred cCCCcchhhcCCCCCceeeeccccccccCcccccCCCCCcEEEc
Q 001226 276 LEGQIPETLWGLENLQKLVLSANKLNGTISGQISHCNQLQVIAL 319 (1119)
Q Consensus 276 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 319 (1119)
++.+...+|.++++|+.+.+-.+ ++.+...+|.+|.+|+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 33334444555555555554432 23333444444444444444
No 457
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=44.42 E-value=3.1 Score=29.54 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=8.1
Q ss_pred eeehhhHHHHHHHHHH
Q 001226 777 LAGIIIGVLLSVALLC 792 (1119)
Q Consensus 777 ~~~ii~~~~~~v~~~~ 792 (1119)
+++|+++++.++++++
T Consensus 12 ~~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 12 NLAVIGGVAVGVVLLL 27 (41)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred eEEEEeehhHHHHHHH
Confidence 4445555555555444
No 458
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.69 E-value=57 Score=28.17 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=25.5
Q ss_pred cccccCcccccCCCCCcEEEccccccccccCcccCCCCCCCeEEccC
Q 001226 299 KLNGTISGQISHCNQLQVIALSRNNLVGQIPRSVGNLSSLNSLLLFN 345 (1119)
Q Consensus 299 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 345 (1119)
.++.+...+|.+|..|+.+.+-.+ ++.+...+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344455556666666666666543 3334445566666666665554
No 459
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=34.00 E-value=5.3 Score=28.75 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=19.5
Q ss_pred ceeeehhhHHHHHHHHHHHhheee
Q 001226 775 GRLAGIIIGVLLSVALLCALIYIM 798 (1119)
Q Consensus 775 ~~~~~ii~~~~~~v~~~~~~~~~~ 798 (1119)
....+|+.|++.++++++++...+
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~ 31 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGI 31 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHHHHH
Confidence 788888888888888888877654
No 460
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=23.71 E-value=1.5e+02 Score=35.37 Aligned_cols=45 Identities=24% Similarity=0.121 Sum_probs=33.1
Q ss_pred HHHHHHHHHHH--HHHHHHHhCCCCCeEecCCCCCCeEeCCCCceEEEeccccc
Q 001226 930 NTRYHIALGIA--QGLSYLHYDCVPQIIHRDIKSDNILLDSELEPKIGDFGMSK 981 (1119)
Q Consensus 930 ~~~~~i~~~i~--~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~vkl~DfGla~ 981 (1119)
..+..++..+| ..+.|+=.. +|=.++|||++.+|++.-+|||.+-
T Consensus 529 ~ar~nF~~SlA~~Svv~YILGl-------GDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 529 EVMDTYIKSCAGYCVITYLLGV-------GDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------CCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHccC-------CCCCCcceEEeCCCCEEEEeehhhh
Confidence 34555555544 345565533 5888999999999999999999874
Done!