BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001227
(1119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 185/295 (62%), Gaps = 20/295 (6%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V ++DI +E K T+KE+V+ P+ RP++F L P KGILLFGPPGTGKT++ K +A
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIA 138
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
+++GA F +IS SS+TSKW GEGEK V+A+F++A P+V+F+DE+DS+L +R + GEH
Sbjct: 139 SQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEH 197
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 993
E+ R++K EF+V DG T ++R+LV+ ATNRP ++DEA RRL +RL + LP+A R+
Sbjct: 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARK 257
Query: 994 KIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXX 1052
+I+ +++KE+ S+ ++E I +D +SG+D+ LC A+ P
Sbjct: 258 QIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGP--------------I 303
Query: 1053 XXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1107
A + VRP+ DF+ A V SVS + + E WN+ +G G
Sbjct: 304 RSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYE--NWNKTFGCG 356
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 191/306 (62%), Gaps = 20/306 (6%)
Query: 802 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 861
L+ + I + V FDDI + K L+E+V+LP RPELF L P +G+LLFGPP
Sbjct: 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTG--LRAPARGLLLFGPP 157
Query: 862 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 921
G GKTMLAKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS++F+D+VD
Sbjct: 158 GNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVD 217
Query: 922 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 981
S+L R GEH+A R++K EF++ +DG+++ +RVLV+ ATNRP +LDEAV+RR +R
Sbjct: 218 SLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKR 276
Query: 982 LMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXX 1040
+ V+LP+ R +++ +L K+ + +L +A M DGYSGSDL L AA P
Sbjct: 277 VYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336
Query: 1041 XXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQW 1100
S+ ++R +++ DF + +++ SVS ++ + ++W
Sbjct: 337 LKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRW 380
Query: 1101 NELYGE 1106
N+ +G+
Sbjct: 381 NKDFGD 386
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 209 bits (532), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 129/308 (41%), Positives = 185/308 (60%), Gaps = 21/308 (6%)
Query: 801 KLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 860
+L+ D I V + DI + K L+E+V+LP RPELF L P KG+LLFGP
Sbjct: 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTG--LRAPAKGLLLFGP 62
Query: 861 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEV 920
PG GKT+LA+AVATE A F+NIS +S+TSK+ G+GEK V+A+F++A + PS++F+DEV
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 921 DSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAATNRPFDLDEAVVRRLP 979
DS+L R + EHEA R++K EF+V +DGL D +R++VLAATNRP +LDEA +RR
Sbjct: 123 DSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT 181
Query: 980 RRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPX 1038
+R+ V+LPD RE ++ +L K+ D + L +A + DGYSGSDL L AA P
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP- 240
Query: 1039 XXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELL 1098
N +R + DF + +++ SV+ +S N E
Sbjct: 241 -------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE-- 285
Query: 1099 QWNELYGE 1106
+W++ YG+
Sbjct: 286 KWSQDYGD 293
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 186 bits (472), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 142/231 (61%), Gaps = 17/231 (7%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 105
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
TEA + F ++S S + SKW GE EK VK +F++A + PS++F+D+VD++ G R GE
Sbjct: 106 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 164
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 993
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 165 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 223
Query: 994 KIIRV-------ILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037
+ + +L KE D + M +GYSGSD+ + A P
Sbjct: 224 TMFEINVGDTPSVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQP 268
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 142/231 (61%), Gaps = 17/231 (7%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 81
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
TEA + F ++S S + SKW GE EK VK +F++A + PS++F+DEVD++ G R GE
Sbjct: 82 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR-GEGES 140
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 993
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 141 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 199
Query: 994 KIIRV-------ILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037
+ + +L KE D + M +GYSGSD+ + A P
Sbjct: 200 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQP 244
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 142/231 (61%), Gaps = 17/231 (7%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 90
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
TEA + F ++S S + SKW GE EK VK +F++A + PS++F+D+VD++ G R GE
Sbjct: 91 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 149
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 993
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 150 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 208
Query: 994 KIIRV-------ILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037
+ + +L KE D + M +GYSGSD+ + A P
Sbjct: 209 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQP 253
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 142/231 (61%), Gaps = 17/231 (7%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 72
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
TEA + F ++S S + SKW GE EK VK +F++A + PS++F+D+VD++ G R GE
Sbjct: 73 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 131
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 993
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 132 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190
Query: 994 KIIRV-------ILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037
+ + +L KE D + M +GYSGSD+ + A P
Sbjct: 191 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQP 235
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 144/226 (63%), Gaps = 6/226 (2%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V + D+ LE K+ LKE V+LP++ P LF G+ T P +GILLFGPPGTGK+ LAKAVA
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRT-PWRGILLFGPPGTGKSYLAKAVA 188
Query: 874 TEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 932
TEA + F +IS S + SKW GE EK VK +F LA + PS++F+DE+DS+ G R + E
Sbjct: 189 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENE 247
Query: 933 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNR 992
EA R++K EF+V G+ D + +LVL ATN P+ LD A+ RR +R+ + LP+A R
Sbjct: 248 SEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR 306
Query: 993 EKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037
+ R+ L + + ++ D + + DGYSG+D+ + A P
Sbjct: 307 AAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQP 352
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 141/226 (62%), Gaps = 6/226 (2%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V + D+ LE K+ LKE V+LP++ P LF G+ T P +GILLFGPPGTGK+ LAKAVA
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRT-PWRGILLFGPPGTGKSYLAKAVA 66
Query: 874 TEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 932
TEA + F +IS S + SKW GE EK VK +F LA + PS++F+DE+DS+ G R E
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NE 125
Query: 933 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNR 992
EA R++K EF+V G+ D + +LVL ATN P+ LD A+ RR +R+ + LP+ R
Sbjct: 126 SEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHAR 184
Query: 993 EKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037
+ ++ L + + ++ D + DGYSG+D+ + A P
Sbjct: 185 AAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQP 230
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 7/224 (3%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPG 931
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 932 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 989
A ++ N+ + DG+ T K+ V ++ ATNRP +D A++R RL + + + LPD
Sbjct: 593 GGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 990 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 1033
+R I++ L K +A DVDLE +A M +G+SG+DL +C A
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 158/294 (53%), Gaps = 15/294 (5%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V +DD+G +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THG 318
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 991
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 992 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXX 1051
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA------LQAIRKKMDLI 430
Query: 1052 XXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1105
+ +S+ V MDDF++A Q S E+ + W ++ G
Sbjct: 431 DLEDETIDAEVMNSLAV---TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 140/225 (62%), Gaps = 7/225 (3%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPG 931
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 932 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 989
A ++ N+ + DG+ T K+ V ++ ATNRP +D A++R RL + + + LPD
Sbjct: 593 GGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 990 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
+R I++ L K +A DVDLE +A M +G+SG+DL +C A
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 158/294 (53%), Gaps = 15/294 (5%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THG 318
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 991
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 992 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXX 1051
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA------LQAIRKKMDLI 430
Query: 1052 XXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1105
+ +S+ V MDDF++A Q S E+ + W ++ G
Sbjct: 431 DLEDETIDAEVMNSLAV---TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 176 bits (447), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 140/225 (62%), Gaps = 7/225 (3%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 70
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPG 931
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 932 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 989
A ++ N+ + DG+ T K+ V ++ ATNRP +D A++R RL + + + LPD
Sbjct: 131 GGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188
Query: 990 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
+R I++ L K +A DVDLE +A M +G+SG+DL +C A
Sbjct: 189 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
Length = 285
Score = 169 bits (428), Expect = 7e-42, Method: Composition-based stats.
Identities = 97/226 (42%), Positives = 138/226 (61%), Gaps = 9/226 (3%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V ++DIG LE ++E+V LPL+ PELF K + P KGILL+GPPGTGKT+LAKAVA
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPP-KGILLYGPPGTGKTLLAKAVA 72
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 930
TE A FI + S + K+ GEG VK +F LA + APS++F+DE+D++ +R +
Sbjct: 73 TETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132
Query: 931 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 988
G+ E R + + + DG + V ++ ATNRP LD A++R R R + V PD
Sbjct: 133 GDREVQRTLM-QLLAEMDGFDARGD--VKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 989 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
R +I+++ K LA DV+LE IA M +G G++LK +C A
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAG 235
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 158/294 (53%), Gaps = 15/294 (5%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 991
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 992 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXX 1051
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA------LQAIRKKMDLI 430
Query: 1052 XXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1105
+ +S+ V MDDF++A Q S E+ + W ++ G
Sbjct: 431 DLEDETIDAEVMNSLAV---TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 158/294 (53%), Gaps = 15/294 (5%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 991
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 992 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXX 1051
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA------LQAIRKKMDLI 430
Query: 1052 XXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1105
+ +S+ V MDDF++A Q S E+ + W ++ G
Sbjct: 431 DLEDETIDAEVMNSLAV---TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 158/294 (53%), Gaps = 15/294 (5%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 991
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 992 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXX 1051
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA------LQAIRKKMDLI 430
Query: 1052 XXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1105
+ +S+ V MDDF++A Q S E+ + W ++ G
Sbjct: 431 DLEDETIDAEVMNSLAV---TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of
Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 137/223 (61%), Gaps = 6/223 (2%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V +DD+G +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 991
E R++ ++ + DGL K + V+V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 992 REKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
R +I+++ +LA DVDLE +AN G+ G+DL LC AA
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 139/226 (61%), Gaps = 10/226 (4%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
+TFD IG L L+E++ LPL+ PE+F + + KP KG+LL+GPPGTGKT+LAKAVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-- 931
GANFI S I K+ GE + ++ +F+ A + P ++F+DEVD++ GRR + G
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 932 -EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 988
+ E R + E + DG + ++++ ATNRP LD A++R RL R++ + LP+
Sbjct: 297 ADREIQRTLM-ELLTQMDGFDNLGQTKIIM--ATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 989 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
R +I ++ AK + + D E M+DG++G+D++N C T A
Sbjct: 354 EAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRN-CATEA 398
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 138/230 (60%), Gaps = 11/230 (4%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
VT+ DIGALE++++ L ++ P++ P+ F L P G+LL GPPG GKT+LAKAVA
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVA 65
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
E+G NFI++ + + + GE E+ V+ VF A AP V+F DEVD++ RR + E
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD-RET 124
Query: 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPN 991
A ++ N+ + DGL +++V ++AATNRP +D A++R RL + L V LP +
Sbjct: 125 GASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182
Query: 992 REKIIRVIL---AKEELASDVDLEGIAN--MADGYSGSDLKNLCVTAAHC 1036
R I++ I K L +DV+LE IA D Y+G+DL L A+ C
Sbjct: 183 RLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASIC 232
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 136/225 (60%), Gaps = 9/225 (4%)
Query: 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 874
++ DIG LE+ +KE V LPL PEL+ + + KP KG++L+G PGTGKT+LAKAVA
Sbjct: 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVAN 238
Query: 875 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---G 931
+ A F+ I S + K+ G+G + + +F +A + APS+VF+DE+D++ +R + G
Sbjct: 239 QTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG 298
Query: 932 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 989
E E R M E + DG D+ V V+ ATN+ LD A++R R+ R+++ PD
Sbjct: 299 EREIQRTML-ELLNQLDGF--DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDL 355
Query: 990 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
++KI+ + +K L+ DV+LE + D SG+D++ +C A
Sbjct: 356 STKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAG 400
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 136/232 (58%), Gaps = 10/232 (4%)
Query: 808 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 867
P + VTF D+G E + LKE+V L+ P F + P KGILL GPPGTGKT+
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTL 64
Query: 868 LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 927
LA+AVA EA F +IS S + G G V+ +F+ A AP +VF+DE+D+ +GR
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRH 123
Query: 928 ENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL 982
G H+ + N+ +V DG + KE ++V+AATNRP LD A++R R +++
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDILDPALLRPGRFDKKI 181
Query: 983 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
+V+ PD R+KI+ + + LA DV+LE IA G+ G+DL+NL AA
Sbjct: 182 VVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 147 bits (370), Expect = 5e-35, Method: Composition-based stats.
Identities = 92/228 (40%), Positives = 132/228 (57%), Gaps = 10/228 (4%)
Query: 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 871
I TF D+ + K+ + ELV L+ P F K P KG+L+ GPPGTGKT+LAKA
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKA 64
Query: 872 VATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP- 930
+A EA F IS S + G G V+ +F A K AP ++F+DE+D+ +GR+
Sbjct: 65 IAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA-VGRQRGAG 123
Query: 931 --GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNL 986
G H+ + N+ +V DG + E ++V+AATNRP LD A++R R R+++V L
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181
Query: 987 PDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
PD RE+I++V + + LA D+D IA G+SG+DL NL AA
Sbjct: 182 PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 229
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 146 bits (369), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 135/232 (58%), Gaps = 10/232 (4%)
Query: 808 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 867
P + VTF D+G E + LKE+V L+ P F + P KGILL GPPGTG T+
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGATL 64
Query: 868 LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 927
LA+AVA EA F +IS S + G G V+ +F+ A AP +VF+DE+D+ +GR
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRH 123
Query: 928 ENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL 982
G H+ + N+ +V DG + KE ++V+AATNRP LD A++R R +++
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDILDPALLRPGRFDKKI 181
Query: 983 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
+V+ PD R+KI+ + + LA DV+LE IA G+ G+DL+NL AA
Sbjct: 182 VVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 136/238 (57%), Gaps = 13/238 (5%)
Query: 802 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 861
++ + +P S T+D +G L +KE++ LP++ PELF + +P KG++L+GPP
Sbjct: 137 MMVEKVPDS----TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPP 191
Query: 862 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 921
GTGKT+LA+AVA FI +S + + K+ GEG + V+ +F +A + APS++F+DE+D
Sbjct: 192 GTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251
Query: 922 SMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR-- 976
S+ R G+ E R M E + DG T + + ++ ATNR LD A++R
Sbjct: 252 SIGSTRVEGSGGGDSEVQRTML-ELLNQLDGFET--SKNIKIIMATNRLDILDPALLRPG 308
Query: 977 RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
R+ R++ P R +I+R+ K L ++L +A +G SG+D+K +C A
Sbjct: 309 RIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAG 366
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 140 bits (352), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 132/224 (58%), Gaps = 9/224 (4%)
Query: 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 874
T+ D+G L+ + L E ++LP++R + F + P KG L++GPPGTGKT+LA+A A
Sbjct: 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARACAA 237
Query: 875 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPG 931
+ A F+ ++ + + GEG K V+ F+LA + AP+++F+DE+D++ +R E G
Sbjct: 238 QTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG 297
Query: 932 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDA 989
+ E R M E + DG + D RV VLAATNR LD A++R RL R++ LP
Sbjct: 298 DREVQRTML-ELLNQLDGFSSDD--RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSE 354
Query: 990 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 1033
+R +I+++ K D++ + +A D ++G+ LK + V A
Sbjct: 355 DSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEA 398
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 133/226 (58%), Gaps = 8/226 (3%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
V F D+ E K+ + E+V L+ PE + P KG+LL GPPGTGKT+LAKAVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAKAVA 65
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-- 931
EA F ++ SS + G G V+ +F A K APS++F+DE+D++ R G
Sbjct: 66 GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125
Query: 932 -EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 988
++ + N+ + DG +++ V+VLAATNRP LD A++R R R+++V+ PD
Sbjct: 126 SGNDEREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 989 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
R +I++V + +LA+DV+L+ +A + G +G+DL N+ AA
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAA 230
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 132/239 (55%), Gaps = 20/239 (8%)
Query: 803 LADVIPP------SDIG------VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTK 850
L D++PP S +G VT+ D+G L+ K ++E V LPL + +L+ + +
Sbjct: 146 LVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-D 204
Query: 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 910
P +G+LL+GPPGTGKTML KAVA A FI ++ S K+ GEG + V+ VF LA +
Sbjct: 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264
Query: 911 APSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968
APS++F+DEVDS+ +R G ++++ E + DG V V+ ATNR
Sbjct: 265 APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF--DQSTNVKVIMATNRAD 322
Query: 969 DLDEAVVR--RLPRRL-MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1024
LD A++R RL R++ +L D R I I +K LA + DL+ + D SG+
Sbjct: 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGA 381
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 9/226 (3%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
VT+ D+G ++ + L+E+V LPL PE F + P KGILL+GPPGTGKT+ A+AVA
Sbjct: 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPP-KGILLYGPPGTGKTLCARAVA 264
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 930
A FI + S + K+ GEG + V+ +F +A ++F DE+D++ G R +
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 931 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 988
G++E R M E + DG + + V+ ATNRP LD A++R R+ R++ +LPD
Sbjct: 325 GDNEVQRTML-ELITQLDGFDPRGN--IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPD 381
Query: 989 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
R I R+ + + E I+ + +G++L+++C A
Sbjct: 382 LEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAG 427
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 128/234 (54%), Gaps = 19/234 (8%)
Query: 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 871
+GV+F D+ + K ++E V L+ PE F + P KG LL GPPG GKT+LAKA
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKA 58
Query: 872 VATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---- 927
VATEA F+ ++ + G G V+++F A AP +V++DE+D++ +R
Sbjct: 59 VATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118
Query: 928 ---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL 982
N E + + N+ +V DG+ T D V+VLA+TNR LD A++R RL R +
Sbjct: 119 SGFSNTEEEQTL----NQLLVEMDGMGTTD--HVIVLASTNRADILDGALMRPGRLDRHV 172
Query: 983 MVNLPDAPNREKIIRVILAKEEL--ASDVDLEGIANMADGYSGSDLKNLCVTAA 1034
++LP R +I L +L +S + +A + G+SG+D+ N+C AA
Sbjct: 173 FIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAA 226
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 94
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 930
EA FI S S + G G V+ +F A + AP +VF+DE+D+ +GR+
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 153
Query: 931 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 988
G ++ + N+ +V DG KD ++V+AATNRP LD A++R R R++ ++ PD
Sbjct: 154 GGNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
Query: 989 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1025
RE+I+R+ + LA DVDL +A G+ G+D
Sbjct: 212 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
Length = 508
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 94
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 930
EA FI S S + G G V+ +F A + AP +VF+DE+D+ +GR+
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 153
Query: 931 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 988
G ++ + N+ +V DG KD ++V+AATNRP LD A++R R R++ ++ PD
Sbjct: 154 GGNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
Query: 989 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1025
RE+I+R+ + LA DVDL +A G+ G+D
Sbjct: 212 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
Length = 499
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 85
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 930
EA FI S S + G G V+ +F A + AP +VF+DE+D+ +GR+
Sbjct: 86 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 144
Query: 931 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 988
G ++ + N+ +V DG KD ++V+AATNRP LD A++R R R++ ++ PD
Sbjct: 145 GGNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202
Query: 989 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1025
RE+I+R+ + LA DVDL +A G+ G+D
Sbjct: 203 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 120 bits (301), Expect = 5e-27, Method: Composition-based stats.
Identities = 86/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 70
Query: 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 930
EA FI S S + G G V+ +F A + AP +VF+DE+D+ +GR+
Sbjct: 71 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 129
Query: 931 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 988
G ++ + N+ +V DG KD ++V+AATNRP LD A++R R R++ ++ PD
Sbjct: 130 GGNDEREQTLNQLLVEMDGFE-KDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 187
Query: 989 APNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1025
RE+I+R+ + LA DVDL +A G+ G+D
Sbjct: 188 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 841 ELFCKGQLTKPCKG--ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI--TSKWFGEG 896
E +LTK KG + L GPPG GKT LAK++A G F+ IS+ + S+ G
Sbjct: 95 EYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154
Query: 897 EKYVKAV-------FSLASKIAPSVVFVDEVDSM 923
YV A+ A K+ P V +DE+D M
Sbjct: 155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKM 187
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 23/173 (13%)
Query: 847 QLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF--GEGEK 898
QL +P K IL+ GP G GKT +A+ +A A A FI + + T + E +
Sbjct: 39 QLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDS 98
Query: 899 YVKAVFSLASKIAPSV-----VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 953
++ + A +V VF+DE+D + + E G + ++ + + +G
Sbjct: 99 IIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158
Query: 954 DK------ERVLVLAA----TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 996
K + +L +A+ RP DL + RLP R+ + A + E+I+
Sbjct: 159 TKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERIL 211
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 850 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 909
+P + +LLFGPPG GKT LA +A E G N S +I EK LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANS 87
Query: 910 IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDKE--RVLVLAATN 965
+ ++F+DE+ L R+ + AM + ++ RT E R ++ AT
Sbjct: 88 LEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 966 RP 967
RP
Sbjct: 147 RP 148
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 850 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 909
+P + +LLFGPPG GKT LA +A E G N S +I EK LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANS 87
Query: 910 IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDKE--RVLVLAATN 965
+ ++F+DE+ L R+ + AM + ++ RT E R ++ AT
Sbjct: 88 LEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 966 RP 967
RP
Sbjct: 147 RP 148
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 850 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 909
+P + +LLFGPPG GKT LA +A E G N S +I EK LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANS 87
Query: 910 IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDKE--RVLVLAATN 965
+ ++F+DE+ L R+ + AM + ++ RT E R ++ AT
Sbjct: 88 LEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 966 RP 967
RP
Sbjct: 147 RP 148
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--YVKAVFSLAS 908
P +LL GPP +GKT LA +A E+ FI I S F E K +K +F A
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC-SPDKMIGFSETAKCQAMKKIFDDAY 120
Query: 909 KIAPSVVFVDEVDSML 924
K S V VD+++ +L
Sbjct: 121 KSQLSCVVVDDIERLL 136
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--YVKAVFSLAS 908
P +LL GPP +GKT LA +A E+ FI I S F E K +K +F A
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC-SPDKMIGFSETAKCQAMKKIFDDAY 121
Query: 909 KIAPSVVFVDEVDSML 924
K S V VD+++ +L
Sbjct: 122 KSQLSCVVVDDIERLL 137
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 855 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSV 914
++L+GPPGTGKT LA+ +A A A+ IS + K E + + + + ++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRR---TI 109
Query: 915 VFVDEV 920
+FVDEV
Sbjct: 110 LFVDEV 115
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 855 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-----EKYVKAVFSLAS 908
ILL GP G+GKT+LA+ +A F +++T + + GE +K ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 909 KIAPSVVFVDEVDSMLGRRENP 930
K +V++D++D + + +NP
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNP 135
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 855 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-----EKYVKAVFSLAS 908
ILL GP G+GKT+LA+ +A F +++T + + GE +K ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 909 KIAPSVVFVDEVDSMLGRRENP 930
K +V++D++D + + +NP
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNP 135
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 856 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 903
+L G PG GKT + + +A G +++ M S+ +K+ GE E+ +KAV
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 904 FS-LASKIAPSVVFVDEVDSMLG 925
+ ++F+DE+ +++G
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVG 140
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 853 KGILLFGPPGTGKTMLAKAVATEAGANF 880
+ +LL GPPGTGKT LA A+A E G+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 853 KGILLFGPPGTGKTMLAKAVATEAGANF 880
+ +LL GPPGTGKT LA A+A E G+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 856 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 903
+L G PG GKT + + +A G +++ M S+ +K+ GE E+ +KAV
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 904 FS-LASKIAPSVVFVDEVDSMLG 925
+ ++F+DE+ +++G
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVG 277
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 37.0 bits (84), Expect = 0.070, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 856 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 903
+L G PG GKT + + +A G + + M ++ +K+ GE E+ +K V
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 904 FS-LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMK 940
+ LA + ++F+DE+ +M+G + G +A +K
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK 144
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 855 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS----KWFGEGEKYVKAVFSLAS-- 908
ILL GP G+GKT++A+ +A I I++S TS + GE + + AS
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLD---IPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 909 ---KIAPSVVFVDEVDSMLGRREN---------PGEHEAMRKMKNEFMVN 946
K +VF+DE+D + EN G +A+ K+ +VN
Sbjct: 132 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 912
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 107
Query: 913 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 947
+V V ++ R E E + + NW
Sbjct: 108 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 142
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 912
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 114
Query: 913 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 947
+V V ++ R E E + + NW
Sbjct: 115 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 149
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 912
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 108
Query: 913 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 947
+V V ++ R E E + + NW
Sbjct: 109 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 143
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 843 FCKGQLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEG 896
+ + QL +P K IL+ GP G GKT +A+ +A A A FI + + T G
Sbjct: 35 WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYV 92
Query: 897 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933
K V ++ + A +V E+ R E+ E
Sbjct: 93 GKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEE 129
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 36.2 bits (82), Expect = 0.099, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 836 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 883
PL PE ILL G PG GKT L K +A+++G +IN+
Sbjct: 2 PLGSPEFML-------LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 855 ILLFGPPGTGKTMLAKAVATEAGANFINI 883
ILL G PG GKT L K +A+++G +IN+
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 843 FCKGQLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEG 896
+ + QL +P K IL GP G GKT +A+ +A A A FI + + T G
Sbjct: 35 WRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYV 92
Query: 897 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAM 936
K V ++ + A +V E+ R E+ E +
Sbjct: 93 GKEVDSIIRDLTDSAXKLVRQQEIAKNRARAEDVAEERIL 132
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891
+ +L+GPPG GKT A VA E G + + + S + SK
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 856 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 903
+L G PG GKT + + +A + G +++ +SS+ +K+ G+ E+ +K++
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 904 FSLASKIAPSVV-FVDEVDSMLG 925
VV F+DE+ +++G
Sbjct: 107 LKEVQDAEGQVVMFIDEIHTVVG 129
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 855 ILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFG--------EGEKYVKAVFS 905
+L +GPPGTGKT A+A E G N+ N+ + S G + + +FS
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS 108
Query: 906 LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 941
K+ + +DE D+M +N R KN
Sbjct: 109 KGFKL----IILDEADAMTNAAQNALRRVIERYTKN 140
>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
Length = 300
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 286 LKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLK 345
L+ D+ +V I ++++D+L +G+L +N S S + + KN + + Y+ ++
Sbjct: 157 LRMLDKYSVCIGGG-ESYRDNLCDGVLIKDNHIASCGSITLAIQRLRKN--LKNEYIAIE 213
Query: 346 CNNFAKYASDLPTMCPRILLSGPAGSEI 373
C+N ++ L ILL + SEI
Sbjct: 214 CDNISQVEESLSNNVDMILLDNMSISEI 241
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 855 ILLFGPPGTGKTMLAKAVATEAGANFINI-SMSSITSKWF 893
+ + GP GTGK+ +AK +A + GA++++ +M I + W
Sbjct: 7 VAVDGPSGTGKSSVAKELARQLGASYLDTGAMYRIVTLWV 46
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
Length = 1155
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 33/146 (22%)
Query: 411 ESSRTEKASMFAKRAALLQHRK-PTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKK 469
ES KASM A + ++++ P SS + + V +A+ E S ++ F
Sbjct: 1012 ESDSLTKASMAAVESEIIKYVSLPDSSEQKKLA---KVPREAILNAESSYVLLRSQRFHL 1068
Query: 470 GDRVKFV---GNV---TSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEG 523
GDRV ++ G V + GT V T G + I V FD I G
Sbjct: 1069 GDRVMYIQDSGKVPLHSKGTVVGYTSIGKNVS----------------IQVLFDNEIIAG 1112
Query: 524 NNLGGFCEDDHGFFCTASSLRLDSSL 549
NN GG + G L LDSS
Sbjct: 1113 NNFGGRLQTRRG-------LGLDSSF 1131
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 811 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 864
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 865 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 924
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 925 GRRENPGEHEAMRKMKNEFMVN 946
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 811 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 864
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 865 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 924
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 925 GRRENPGEHEAMRKMKNEFMVN 946
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 811 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 864
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 865 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 924
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 925 GRRENPGEHEAMRKMKNEFMVN 946
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 811 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 864
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 865 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 924
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 925 GRRENPGEHEAMRKMKNEFMVN 946
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 811 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 864
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 865 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 924
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 925 GRRENPGEHEAMRKMKNEFMVN 946
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 23/186 (12%)
Query: 855 ILLFGPPGTGKTMLAKAVA---------TEAGANFINISMSSITSKWFGEGEKYVKA-VF 904
IL+ G PGT K+ + + ++ T G+ ++ + + K G GE Y++A
Sbjct: 330 ILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREK--GTGEYYLEAGAL 387
Query: 905 SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 964
LA + +DE+D M + HEAM + + G+ K R V+AA
Sbjct: 388 VLADG---GIAVIDEIDKMRD-EDRVAIHEAME--QQTVSIAKAGIVAKLNARAAVIAAG 441
Query: 965 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1024
N F + P +NLP P +I ++ + D E + D +SG
Sbjct: 442 NPKFG---RYISERPVSDNINLP--PTILSRFDLIFILKDQPGEQDRELANYILDVHSGK 496
Query: 1025 DLKNLC 1030
KN+
Sbjct: 497 STKNII 502
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 850 KPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSKWFGEGEKYVKAVFSL 906
+P + GP G GKT LA+A+A + I I MS K G + + V
Sbjct: 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKV--- 575
Query: 907 ASKIAPSVVFVDEVD 921
+ SVV +D ++
Sbjct: 576 -RRKPYSVVLLDAIE 589
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 811 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 864
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 865 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 924
+T LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 RTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 925 GRRENPGEHEAMRKMKNEFMVN 946
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 857 LFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPS--- 913
++G G GK+ + V + G N I +S + S GE K ++ + A++I
Sbjct: 41 IWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNM 100
Query: 914 -VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 946
+F++++D+ GR ++ +M N ++N
Sbjct: 101 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 134
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 855 ILLFGPPGTGKTMLAKAVATE----AGANFI--NISMSSITSK---WFGEGEKYVKAVFS 905
I LFGP TGKT +A+A+A N+ N + K W+ EG+ K V S
Sbjct: 108 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVES 167
Query: 906 LASKIAPSVVFVDE 919
+ + S V VD+
Sbjct: 168 AKAILGGSKVRVDQ 181
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 842 LFCKGQLT-KPCKGILLFGPPGTGKTMLAKAVATEAGANF 880
L+ + +T +P + +++ G G+GKT +A VA E G F
Sbjct: 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 855 ILLFGPPGTGKTMLAKAVATE----AGANFI--NISMSSITSK---WFGEGEKYVKAVFS 905
I LFGP TGKT +A+A+A N+ N + K W+ EG+ K V S
Sbjct: 107 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVES 166
Query: 906 LASKIAPSVVFVDE 919
+ + S V VD+
Sbjct: 167 AKAILGGSKVRVDQ 180
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 853 KGILLFGPPGTGKTMLA-KAVATEAGANFINISMSSITS 890
+GI+L GPPG+GKTM+ A+ + + + I+ S T+
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT 1306
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 853 KGILLFGPPGTGKTMLA-KAVATEAGANFINISMSSITS 890
+GI+L GPPG+GKTM+ A+ + + + I+ S T+
Sbjct: 1049 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT 1087
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 856 LLF-GPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKWFGEGEKYVKAVFSLASK 909
LLF GPPGTGKT A A+A + NFI ++ S G V+ ++
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFAR 94
Query: 910 IAP------SVVFVDEVDSM 923
AP ++F+DE D++
Sbjct: 95 TAPIGGAPFKIIFLDEADAL 114
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 855 ILLFGPPGTGKTMLAKAVA 873
+LL G PGTGK+ML +A+A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|1U6I|A Chain A, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|B Chain B, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|C Chain C, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|D Chain D, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|E Chain E, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|F Chain F, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|G Chain G, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|H Chain H, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|I Chain I, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|J Chain J, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|K Chain K, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|L Chain L, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6J|A Chain A, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|B Chain B, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|C Chain C, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|D Chain D, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|E Chain E, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|F Chain F, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|G Chain G, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|H Chain H, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|I Chain I, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|J Chain J, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|K Chain K, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|L Chain L, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|3IQE|A Chain A, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|B Chain B, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|C Chain C, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|D Chain D, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|E Chain E, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|F Chain F, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQF|A Chain A, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|B Chain B, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|C Chain C, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|D Chain D, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|E Chain E, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|F Chain F, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|G Chain G, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|H Chain H, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|I Chain I, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|J Chain J, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|K Chain K, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|L Chain L, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQZ|A Chain A, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|B Chain B, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|C Chain C, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|D Chain D, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|E Chain E, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|F Chain F, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
Length = 283
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 258 LAGSSSPDFDISGGISKILDEQREIRELLKDSDRPTVLI-SARRQAFKDSLQEGILG 313
+A PDF + GG + + RE+L DS+ P V+I A KD ++E LG
Sbjct: 59 IAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQGLG 115
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 17/80 (21%)
Query: 855 ILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKWFGEGEKYVKAVFSLASK 909
+L GPPGTGKT A A+A + NFI ++ S G V+ ++
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFAR 94
Query: 910 IAP------SVVFVDEVDSM 923
AP ++F+DE D++
Sbjct: 95 TAPIGGAPFKIIFLDEADAL 114
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 855 ILLF-GPPGTGKTMLAKAVATEAGANFINISMSSI 888
IL+F GPPG GK AK +A E G F++IS I
Sbjct: 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDI 34
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 30.0 bits (66), Expect = 8.3, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 846 GQLTKPCKGI--LLFGPPGTGKTMLAKAVATE 875
G + +P KGI L+ G PGTGKT +A+ +A E
Sbjct: 3 GSMEQP-KGINILITGTPGTGKTSMAEMIAAE 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,515,940
Number of Sequences: 62578
Number of extensions: 1286716
Number of successful extensions: 2407
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2213
Number of HSP's gapped (non-prelim): 125
length of query: 1119
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1010
effective length of database: 8,152,335
effective search space: 8233858350
effective search space used: 8233858350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)