Query 001227
Match_columns 1119
No_of_seqs 646 out of 3744
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 19:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 4.4E-65 9.4E-70 584.8 39.3 554 314-1106 182-790 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 2.5E-61 5.3E-66 562.8 31.6 391 571-1090 276-681 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 1.3E-54 2.8E-59 481.0 27.3 377 727-1110 7-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 2.3E-51 5E-56 510.8 39.3 538 317-1105 173-730 (733)
5 KOG0736 Peroxisome assembly fa 100.0 6.1E-49 1.3E-53 461.3 38.2 440 558-1090 479-939 (953)
6 KOG0738 AAA+-type ATPase [Post 100.0 1.5E-45 3.2E-50 407.8 22.9 284 810-1106 205-490 (491)
7 COG0464 SpoVK ATPases of the A 100.0 7.7E-44 1.7E-48 425.6 33.2 452 513-1088 20-488 (494)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 1.3E-44 2.8E-49 416.4 22.9 297 813-1112 186-522 (802)
9 COG1222 RPT1 ATP-dependent 26S 100.0 3E-44 6.4E-49 396.3 23.8 247 811-1086 145-395 (406)
10 KOG0741 AAA+-type ATPase [Post 100.0 2E-41 4.4E-46 384.6 21.9 327 680-1035 383-721 (744)
11 KOG0735 AAA+-type ATPase [Post 100.0 1.1E-39 2.3E-44 380.3 30.9 298 718-1046 595-894 (952)
12 KOG0739 AAA+-type ATPase [Post 100.0 7.2E-41 1.6E-45 359.6 17.9 299 804-1108 120-439 (439)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 3.2E-36 7E-41 356.4 32.6 411 557-1104 67-484 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 4.6E-37 9.9E-42 349.6 20.6 249 811-1090 298-548 (752)
15 KOG0740 AAA+-type ATPase [Post 100.0 1.5E-35 3.2E-40 339.8 18.5 279 812-1108 148-427 (428)
16 KOG0652 26S proteasome regulat 100.0 4.6E-35 9.9E-40 310.1 18.7 245 811-1084 165-413 (424)
17 KOG0727 26S proteasome regulat 100.0 6.7E-34 1.5E-38 300.2 20.1 248 808-1084 146-397 (408)
18 KOG0728 26S proteasome regulat 100.0 1.3E-33 2.9E-38 297.7 20.6 245 813-1086 143-391 (404)
19 KOG0726 26S proteasome regulat 100.0 1.9E-34 4.1E-39 309.5 14.1 246 812-1086 180-429 (440)
20 KOG0730 AAA+-type ATPase [Post 100.0 8.4E-34 1.8E-38 332.5 17.8 263 813-1112 181-445 (693)
21 KOG0731 AAA+-type ATPase conta 100.0 3.1E-33 6.8E-38 336.5 23.2 248 810-1087 304-557 (774)
22 COG1223 Predicted ATPase (AAA+ 100.0 2.2E-33 4.7E-38 298.0 18.5 242 813-1087 117-359 (368)
23 PTZ00454 26S protease regulato 100.0 7.2E-33 1.6E-37 321.6 24.6 246 811-1085 139-388 (398)
24 PRK03992 proteasome-activating 100.0 5.4E-32 1.2E-36 314.6 24.6 250 812-1090 126-379 (389)
25 KOG0729 26S proteasome regulat 100.0 2.2E-32 4.9E-37 290.4 16.0 249 811-1088 171-423 (435)
26 PTZ00361 26 proteosome regulat 100.0 4E-31 8.7E-36 309.2 22.6 246 812-1086 178-427 (438)
27 TIGR01241 FtsH_fam ATP-depende 100.0 5.8E-31 1.3E-35 315.0 24.3 270 809-1108 47-320 (495)
28 COG0465 HflB ATP-dependent Zn 100.0 3.7E-31 8E-36 314.4 20.0 250 811-1090 144-397 (596)
29 KOG0732 AAA+-type ATPase conta 100.0 3.5E-32 7.5E-37 334.4 7.5 354 498-926 288-668 (1080)
30 TIGR01243 CDC48 AAA family ATP 100.0 4E-30 8.6E-35 320.8 21.5 287 813-1111 174-463 (733)
31 TIGR01242 26Sp45 26S proteasom 100.0 3.8E-29 8.3E-34 288.5 23.5 244 811-1083 116-363 (364)
32 TIGR03689 pup_AAA proteasome A 100.0 1.4E-28 3E-33 291.5 25.3 273 811-1109 176-503 (512)
33 CHL00176 ftsH cell division pr 100.0 1.3E-28 2.8E-33 299.9 23.2 244 812-1085 178-425 (638)
34 KOG0732 AAA+-type ATPase conta 100.0 1.8E-28 3.9E-33 301.8 18.9 347 698-1090 176-532 (1080)
35 KOG0651 26S proteasome regulat 100.0 8.2E-29 1.8E-33 269.1 13.6 243 813-1084 128-374 (388)
36 PRK10733 hflB ATP-dependent me 100.0 9.5E-28 2.1E-32 294.7 23.7 249 811-1089 146-398 (644)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 7.2E-27 1.6E-31 297.0 20.4 189 844-1040 1623-1860(2281)
38 KOG0741 AAA+-type ATPase [Post 99.9 2.4E-26 5.1E-31 262.4 10.6 263 813-1089 215-496 (744)
39 PLN00020 ribulose bisphosphate 99.9 3.1E-24 6.7E-29 241.7 24.9 220 814-1040 112-354 (413)
40 COG1222 RPT1 ATP-dependent 26S 99.9 4.4E-24 9.4E-29 237.0 11.8 231 316-783 145-393 (406)
41 KOG0738 AAA+-type ATPase [Post 99.9 3.3E-23 7.2E-28 230.9 12.8 257 307-785 198-472 (491)
42 KOG0736 Peroxisome assembly fa 99.9 1.1E-22 2.3E-27 241.1 16.5 249 853-1111 432-682 (953)
43 KOG0735 AAA+-type ATPase [Post 99.9 3.4E-21 7.3E-26 226.5 14.5 260 818-1111 409-677 (952)
44 TIGR02639 ClpA ATP-dependent C 99.8 3.4E-19 7.4E-24 222.7 32.7 380 557-1039 262-713 (731)
45 PRK11034 clpA ATP-dependent Cl 99.8 6.8E-19 1.5E-23 218.6 32.4 165 818-1002 459-668 (758)
46 KOG0737 AAA+-type ATPase [Post 99.8 1.1E-20 2.4E-25 211.3 12.2 233 302-753 72-317 (386)
47 CHL00181 cbbX CbbX; Provisiona 99.8 7E-19 1.5E-23 197.2 19.4 237 817-1078 23-281 (287)
48 TIGR02880 cbbX_cfxQ probable R 99.8 2E-18 4.3E-23 193.4 18.0 237 818-1079 23-281 (284)
49 KOG0744 AAA+-type ATPase [Post 99.8 5.5E-19 1.2E-23 193.7 11.6 197 804-1002 129-342 (423)
50 TIGR02881 spore_V_K stage V sp 99.8 2.4E-18 5.1E-23 190.3 16.9 216 816-1043 5-244 (261)
51 KOG0742 AAA+-type ATPase [Post 99.8 4.1E-18 8.9E-23 190.7 18.5 208 814-1032 352-587 (630)
52 KOG0739 AAA+-type ATPase [Post 99.8 3.1E-19 6.7E-24 193.5 8.0 223 303-746 115-349 (439)
53 PF00004 AAA: ATPase family as 99.8 2.5E-18 5.5E-23 167.9 12.5 130 855-986 1-132 (132)
54 KOG0734 AAA+-type ATPase conta 99.8 1.6E-18 3.5E-23 199.0 10.7 221 307-749 289-523 (752)
55 TIGR03345 VI_ClpV1 type VI sec 99.7 3.2E-16 6.9E-21 198.0 30.5 201 817-1040 566-833 (852)
56 COG0464 SpoVK ATPases of the A 99.7 5.5E-17 1.2E-21 194.8 18.5 248 836-1111 3-252 (494)
57 CHL00095 clpC Clp protease ATP 99.7 2.5E-15 5.4E-20 190.3 32.7 203 817-1039 509-783 (821)
58 CHL00195 ycf46 Ycf46; Provisio 99.7 2.7E-17 5.9E-22 195.8 13.9 240 310-786 216-467 (489)
59 PRK10865 protein disaggregatio 99.7 1.8E-15 4E-20 191.6 28.1 173 816-1002 567-781 (857)
60 TIGR03346 chaperone_ClpB ATP-d 99.7 1.1E-14 2.4E-19 185.1 34.9 204 817-1040 565-828 (852)
61 CHL00206 ycf2 Ycf2; Provisiona 99.7 4.9E-17 1.1E-21 208.6 12.4 132 555-751 1718-1861(2281)
62 COG0542 clpA ATP-binding subun 99.7 1.5E-15 3.2E-20 186.0 24.0 162 818-1002 492-707 (786)
63 PF05496 RuvB_N: Holliday junc 99.7 4.3E-16 9.2E-21 166.7 14.7 197 814-1033 21-225 (233)
64 KOG0731 AAA+-type ATPase conta 99.7 1.7E-16 3.6E-21 192.8 11.4 221 311-751 300-537 (774)
65 KOG0743 AAA+-type ATPase [Post 99.7 1E-15 2.2E-20 175.9 17.0 219 814-1043 198-429 (457)
66 TIGR02639 ClpA ATP-dependent C 99.7 1.6E-15 3.6E-20 189.9 19.2 185 814-1023 179-386 (731)
67 PRK03992 proteasome-activating 99.6 7.1E-16 1.5E-20 180.1 13.2 234 315-784 124-374 (389)
68 COG2256 MGS1 ATPase related to 99.6 7.5E-15 1.6E-19 166.4 19.1 177 813-1029 20-213 (436)
69 TIGR00635 ruvB Holliday juncti 99.6 1.5E-14 3.2E-19 163.0 21.3 199 815-1036 2-208 (305)
70 PTZ00454 26S protease regulato 99.6 1.1E-15 2.5E-20 178.3 12.4 216 314-750 137-369 (398)
71 PRK00080 ruvB Holliday junctio 99.6 3.9E-14 8.3E-19 161.9 23.8 201 814-1037 22-230 (328)
72 KOG0726 26S proteasome regulat 99.6 3.5E-16 7.6E-21 169.5 6.3 143 556-780 265-424 (440)
73 KOG0728 26S proteasome regulat 99.6 1.5E-15 3.3E-20 161.6 8.4 145 556-781 227-387 (404)
74 KOG0740 AAA+-type ATPase [Post 99.6 1.7E-15 3.6E-20 175.2 8.9 212 317-749 148-373 (428)
75 TIGR01241 FtsH_fam ATP-depende 99.6 3.1E-15 6.6E-20 179.9 9.7 216 312-749 45-277 (495)
76 TIGR02902 spore_lonB ATP-depen 99.6 3.6E-14 7.8E-19 171.7 18.5 218 813-1081 61-330 (531)
77 PRK11034 clpA ATP-dependent Cl 99.6 2.3E-14 5.1E-19 178.5 17.3 197 815-1035 184-407 (758)
78 TIGR00763 lon ATP-dependent pr 99.6 3.3E-14 7.2E-19 179.1 18.9 212 818-1041 321-558 (775)
79 COG0465 HflB ATP-dependent Zn 99.6 1.2E-14 2.6E-19 174.3 12.7 128 559-753 232-376 (596)
80 PTZ00361 26 proteosome regulat 99.6 9.5E-15 2.1E-19 172.0 10.9 128 557-750 264-407 (438)
81 TIGR03345 VI_ClpV1 type VI sec 99.5 1.7E-13 3.7E-18 173.5 21.0 185 814-1023 184-391 (852)
82 CHL00176 ftsH cell division pr 99.5 2.8E-14 6.1E-19 175.0 12.5 219 311-750 172-406 (638)
83 KOG0729 26S proteasome regulat 99.5 2E-14 4.4E-19 154.3 9.2 127 556-749 257-400 (435)
84 COG2255 RuvB Holliday junction 99.5 1.5E-13 3.3E-18 149.8 16.1 189 813-1023 22-218 (332)
85 PRK12323 DNA polymerase III su 99.5 2.2E-13 4.8E-18 164.2 18.4 184 813-1033 12-229 (700)
86 CHL00095 clpC Clp protease ATP 99.5 4.5E-13 9.7E-18 170.0 21.3 185 814-1023 176-382 (821)
87 PRK14956 DNA polymerase III su 99.5 4.2E-13 9.2E-18 158.4 19.2 183 813-1032 14-225 (484)
88 PRK07003 DNA polymerase III su 99.5 5.1E-13 1.1E-17 162.9 18.8 185 813-1034 12-225 (830)
89 KOG2028 ATPase related to the 99.5 7E-13 1.5E-17 147.7 17.8 208 814-1084 135-369 (554)
90 PRK00149 dnaA chromosomal repl 99.5 4.6E-13 9.9E-18 159.4 17.2 168 853-1034 149-327 (450)
91 PRK10865 protein disaggregatio 99.5 3.3E-13 7.1E-18 171.4 16.9 183 814-1021 175-380 (857)
92 KOG0652 26S proteasome regulat 99.5 5.7E-14 1.2E-18 150.5 8.3 128 557-750 252-395 (424)
93 TIGR00362 DnaA chromosomal rep 99.5 7.2E-13 1.6E-17 155.7 18.2 169 853-1035 137-316 (405)
94 TIGR03346 chaperone_ClpB ATP-d 99.5 6.6E-13 1.4E-17 169.0 19.1 185 814-1023 170-377 (852)
95 PRK14961 DNA polymerase III su 99.5 1.9E-12 4.2E-17 150.0 20.9 185 813-1034 12-225 (363)
96 PRK14962 DNA polymerase III su 99.5 1.4E-12 3.1E-17 155.4 20.2 183 813-1032 10-221 (472)
97 PRK10733 hflB ATP-dependent me 99.5 1.3E-13 2.9E-18 170.2 11.5 126 559-750 234-375 (644)
98 PRK13342 recombination factor 99.5 2.3E-12 5.1E-17 151.8 21.4 180 814-1034 9-201 (413)
99 PRK14949 DNA polymerase III su 99.5 1.6E-12 3.5E-17 161.2 20.2 185 813-1034 12-225 (944)
100 PRK12422 chromosomal replicati 99.5 2.1E-12 4.5E-17 153.2 20.4 215 852-1105 141-366 (445)
101 PRK14960 DNA polymerase III su 99.5 1.7E-12 3.7E-17 157.0 19.1 185 813-1034 11-224 (702)
102 TIGR02928 orc1/cdc6 family rep 99.4 6.6E-12 1.4E-16 144.8 23.2 202 817-1039 15-256 (365)
103 TIGR00390 hslU ATP-dependent p 99.4 7.9E-13 1.7E-17 153.1 15.2 179 818-996 13-342 (441)
104 PRK07994 DNA polymerase III su 99.4 2.4E-12 5.1E-17 157.5 19.9 184 813-1033 12-224 (647)
105 PRK04195 replication factor C 99.4 2E-12 4.4E-17 155.2 19.1 188 813-1031 10-205 (482)
106 PLN03025 replication factor C 99.4 2.7E-12 5.8E-17 146.3 18.5 181 813-1031 9-202 (319)
107 PRK14958 DNA polymerase III su 99.4 2.9E-12 6.3E-17 154.3 19.0 186 813-1035 12-226 (509)
108 PRK06645 DNA polymerase III su 99.4 5.1E-12 1.1E-16 151.6 20.7 185 813-1034 17-234 (507)
109 PRK00411 cdc6 cell division co 99.4 9.2E-12 2E-16 145.2 22.1 202 816-1038 29-263 (394)
110 TIGR01242 26Sp45 26S proteasom 99.4 4.6E-13 1E-17 155.2 11.1 128 557-750 203-346 (364)
111 KOG0727 26S proteasome regulat 99.4 6.6E-13 1.4E-17 141.9 11.0 216 313-749 146-378 (408)
112 PRK05342 clpX ATP-dependent pr 99.4 4.4E-12 9.6E-17 148.8 18.5 226 814-1039 67-380 (412)
113 PRK14964 DNA polymerase III su 99.4 5E-12 1.1E-16 150.6 19.1 186 813-1035 9-223 (491)
114 PRK07940 DNA polymerase III su 99.4 4.6E-12 9.9E-17 148.0 18.0 187 815-1031 3-216 (394)
115 COG1223 Predicted ATPase (AAA+ 99.4 7.7E-13 1.7E-17 142.3 10.1 128 556-749 197-337 (368)
116 PRK08691 DNA polymerase III su 99.4 7.9E-12 1.7E-16 152.5 19.8 186 813-1035 12-226 (709)
117 PRK05201 hslU ATP-dependent pr 99.4 4.2E-12 9.1E-17 147.2 16.2 179 818-996 16-344 (443)
118 PRK14951 DNA polymerase III su 99.4 1.6E-11 3.4E-16 150.0 21.3 186 813-1035 12-231 (618)
119 PRK14088 dnaA chromosomal repl 99.4 6.3E-12 1.4E-16 149.2 17.4 168 853-1033 131-309 (440)
120 KOG2004 Mitochondrial ATP-depe 99.4 7.2E-12 1.6E-16 149.3 17.1 174 817-1002 411-598 (906)
121 TIGR02397 dnaX_nterm DNA polym 99.4 2.1E-11 4.6E-16 140.0 20.6 186 813-1035 10-224 (355)
122 COG0466 Lon ATP-dependent Lon 99.4 2.1E-12 4.6E-17 154.8 12.6 172 818-1001 324-509 (782)
123 PRK12402 replication factor C 99.4 1.6E-11 3.4E-16 139.8 19.0 187 813-1031 11-228 (337)
124 PHA02544 44 clamp loader, smal 99.4 1.6E-11 3.4E-16 139.2 18.9 177 813-1021 17-202 (316)
125 KOG0989 Replication factor C, 99.4 8.8E-12 1.9E-16 137.5 15.5 185 813-1031 32-233 (346)
126 PRK14957 DNA polymerase III su 99.4 1.7E-11 3.8E-16 147.9 19.5 185 813-1034 12-225 (546)
127 PRK05563 DNA polymerase III su 99.4 2E-11 4.3E-16 148.8 19.6 184 813-1033 12-224 (559)
128 TIGR03420 DnaA_homol_Hda DnaA 99.3 3.8E-11 8.3E-16 129.1 19.5 185 814-1035 12-207 (226)
129 PRK08903 DnaA regulatory inact 99.3 6.2E-11 1.3E-15 128.3 21.0 178 813-1032 14-202 (227)
130 PRK13341 recombination factor 99.3 2.9E-11 6.3E-16 150.5 20.7 182 813-1035 24-223 (725)
131 PRK14959 DNA polymerase III su 99.3 2.8E-11 6E-16 147.2 19.8 181 813-1029 12-221 (624)
132 PF05673 DUF815: Protein of un 99.3 2.5E-11 5.4E-16 131.9 17.3 189 813-1031 23-243 (249)
133 PRK14086 dnaA chromosomal repl 99.3 1.6E-11 3.5E-16 148.5 17.6 166 853-1032 315-491 (617)
134 PRK14969 DNA polymerase III su 99.3 2.4E-11 5.2E-16 147.1 19.0 185 813-1034 12-225 (527)
135 PRK14087 dnaA chromosomal repl 99.3 2.8E-11 6.2E-16 143.9 19.0 169 853-1036 142-326 (450)
136 PRK14952 DNA polymerase III su 99.3 3.6E-11 7.9E-16 146.3 20.0 183 813-1032 9-222 (584)
137 PLN00020 ribulose bisphosphate 99.3 6.6E-12 1.4E-16 142.8 12.6 128 557-749 195-353 (413)
138 PRK14963 DNA polymerase III su 99.3 3.2E-11 6.9E-16 145.1 19.2 184 813-1033 10-221 (504)
139 PTZ00112 origin recognition co 99.3 7.9E-11 1.7E-15 144.3 22.3 181 817-1019 755-969 (1164)
140 PRK07764 DNA polymerase III su 99.3 3E-11 6.5E-16 152.0 19.3 183 813-1032 11-224 (824)
141 PRK05896 DNA polymerase III su 99.3 4E-11 8.6E-16 145.2 19.6 184 813-1033 12-224 (605)
142 PRK08084 DNA replication initi 99.3 9.7E-11 2.1E-15 128.1 20.8 183 813-1032 18-212 (235)
143 TIGR00382 clpX endopeptidase C 99.3 3.9E-11 8.5E-16 140.5 17.8 184 815-998 74-329 (413)
144 PRK08727 hypothetical protein; 99.3 2E-10 4.3E-15 125.6 21.8 146 853-1021 42-197 (233)
145 PRK06893 DNA replication initi 99.3 1.3E-10 2.8E-15 126.7 20.2 157 853-1031 40-205 (229)
146 TIGR02640 gas_vesic_GvpN gas v 99.3 6.6E-11 1.4E-15 131.5 18.1 141 853-1000 22-198 (262)
147 PRK10787 DNA-binding ATP-depen 99.3 3.1E-11 6.7E-16 151.8 17.2 171 818-1001 323-507 (784)
148 PRK14965 DNA polymerase III su 99.3 6.3E-11 1.4E-15 145.0 18.9 175 813-1023 12-215 (576)
149 PRK06647 DNA polymerase III su 99.3 8E-11 1.7E-15 143.3 19.6 184 813-1033 12-224 (563)
150 KOG0651 26S proteasome regulat 99.3 1E-11 2.2E-16 136.8 10.5 147 557-784 213-375 (388)
151 PRK07133 DNA polymerase III su 99.3 9.4E-11 2E-15 144.4 19.8 189 813-1032 14-222 (725)
152 PRK14970 DNA polymerase III su 99.3 1.2E-10 2.6E-15 135.2 19.6 183 813-1032 13-212 (367)
153 PRK06305 DNA polymerase III su 99.3 1.5E-10 3.3E-15 137.9 20.0 183 813-1032 13-225 (451)
154 TIGR02903 spore_lon_C ATP-depe 99.3 1.9E-10 4.1E-15 141.7 20.9 232 813-1084 150-431 (615)
155 TIGR03689 pup_AAA proteasome A 99.3 1.9E-11 4E-16 146.4 11.2 126 557-749 273-412 (512)
156 PRK14953 DNA polymerase III su 99.2 1.7E-10 3.7E-15 138.4 19.1 184 813-1033 12-224 (486)
157 COG2812 DnaX DNA polymerase II 99.2 3.9E-11 8.5E-16 142.9 13.5 193 813-1036 12-227 (515)
158 PRK08451 DNA polymerase III su 99.2 2E-10 4.3E-15 138.3 19.3 187 813-1036 10-225 (535)
159 CHL00081 chlI Mg-protoporyphyr 99.2 1.7E-10 3.8E-15 132.5 17.0 168 813-1000 13-232 (350)
160 PRK09111 DNA polymerase III su 99.2 2.5E-10 5.5E-15 139.6 19.3 190 813-1033 20-237 (598)
161 PRK14948 DNA polymerase III su 99.2 2.7E-10 5.9E-15 140.1 19.2 182 813-1031 12-224 (620)
162 PRK00440 rfc replication facto 99.2 3.2E-10 6.9E-15 128.0 18.3 184 813-1034 13-208 (319)
163 PRK13407 bchI magnesium chelat 99.2 1.5E-10 3.2E-15 132.6 15.4 166 813-1000 4-216 (334)
164 COG1221 PspF Transcriptional r 99.2 5.3E-11 1.1E-15 137.9 11.4 207 813-1040 74-312 (403)
165 PRK06620 hypothetical protein; 99.2 5.5E-10 1.2E-14 120.7 18.6 143 853-1032 45-192 (214)
166 PRK14955 DNA polymerase III su 99.2 4E-10 8.6E-15 132.4 18.6 183 813-1032 12-231 (397)
167 cd00009 AAA The AAA+ (ATPases 99.2 1.8E-10 3.8E-15 112.4 13.1 141 821-985 2-150 (151)
168 PRK05642 DNA replication initi 99.2 8.9E-10 1.9E-14 120.6 19.8 157 852-1031 45-210 (234)
169 PRK14954 DNA polymerase III su 99.2 6.9E-10 1.5E-14 136.1 20.2 180 813-1023 12-223 (620)
170 PF00308 Bac_DnaA: Bacterial d 99.2 7.9E-10 1.7E-14 119.9 17.6 168 853-1034 35-213 (219)
171 COG3829 RocR Transcriptional r 99.2 2.2E-11 4.8E-16 143.2 5.4 200 813-1035 241-477 (560)
172 PRK14950 DNA polymerase III su 99.2 7.8E-10 1.7E-14 135.9 19.2 183 813-1032 12-224 (585)
173 COG0593 DnaA ATPase involved i 99.1 1.5E-09 3.3E-14 126.3 19.1 167 852-1033 113-290 (408)
174 TIGR01650 PD_CobS cobaltochela 99.1 2.3E-10 5E-15 129.8 11.9 143 853-1001 65-234 (327)
175 PHA02244 ATPase-like protein 99.1 7.3E-10 1.6E-14 127.2 15.6 130 853-989 120-263 (383)
176 PRK14971 DNA polymerase III su 99.1 2.8E-09 6.1E-14 131.2 21.3 182 813-1031 13-224 (614)
177 COG3604 FhlA Transcriptional r 99.1 3.5E-10 7.7E-15 131.6 12.1 202 813-1037 219-456 (550)
178 TIGR02442 Cob-chelat-sub cobal 99.1 8.4E-10 1.8E-14 136.7 15.2 165 815-1001 2-215 (633)
179 COG1474 CDC6 Cdc6-related prot 99.1 4.9E-09 1.1E-13 121.7 20.6 199 818-1040 18-248 (366)
180 COG2204 AtoC Response regulato 99.1 3.1E-10 6.7E-15 133.7 10.7 205 815-1040 139-377 (464)
181 KOG0991 Replication factor C, 99.1 1.1E-09 2.4E-14 116.8 13.5 187 813-1033 23-219 (333)
182 TIGR02030 BchI-ChlI magnesium 99.1 2.2E-09 4.7E-14 123.3 17.0 164 815-1000 2-219 (337)
183 TIGR02974 phageshock_pspF psp 99.1 9.9E-10 2.1E-14 126.0 13.5 176 853-1037 23-233 (329)
184 PRK09087 hypothetical protein; 99.1 4.3E-09 9.4E-14 114.7 17.7 137 853-1020 45-187 (226)
185 PRK11608 pspF phage shock prot 99.1 1.1E-09 2.3E-14 125.6 13.2 201 815-1036 4-239 (326)
186 PRK05564 DNA polymerase III su 99.0 7.4E-09 1.6E-13 117.9 19.0 172 815-1023 2-185 (313)
187 COG0542 clpA ATP-binding subun 99.0 2.5E-09 5.5E-14 132.0 15.1 182 815-1021 168-372 (786)
188 COG1224 TIP49 DNA helicase TIP 99.0 8.9E-09 1.9E-13 115.7 17.6 129 912-1084 292-433 (450)
189 PRK09112 DNA polymerase III su 99.0 8.6E-09 1.9E-13 119.2 18.2 184 813-1027 19-239 (351)
190 TIGR01817 nifA Nif-specific re 99.0 1.1E-09 2.4E-14 133.3 11.3 206 813-1039 192-430 (534)
191 PRK15424 propionate catabolism 99.0 2.3E-09 4.9E-14 129.8 13.4 202 814-1036 216-464 (538)
192 TIGR02329 propionate_PrpR prop 99.0 1.5E-09 3.4E-14 131.2 12.0 202 814-1036 209-449 (526)
193 COG2607 Predicted ATPase (AAA+ 99.0 1.3E-08 2.9E-13 109.4 17.5 189 813-1031 56-275 (287)
194 COG0714 MoxR-like ATPases [Gen 99.0 2E-09 4.2E-14 123.5 12.1 143 853-1000 44-203 (329)
195 PRK15429 formate hydrogenlyase 99.0 4.4E-09 9.5E-14 131.7 15.7 204 814-1038 373-610 (686)
196 PRK05022 anaerobic nitric oxid 99.0 3.5E-09 7.6E-14 128.3 13.9 204 815-1039 185-422 (509)
197 PRK07471 DNA polymerase III su 99.0 1.2E-08 2.6E-13 118.5 16.9 181 813-1026 15-236 (365)
198 PF07728 AAA_5: AAA domain (dy 98.9 2.1E-10 4.6E-15 114.5 1.5 112 854-978 1-139 (139)
199 PRK10820 DNA-binding transcrip 98.9 4.2E-09 9E-14 127.9 12.7 205 813-1038 200-438 (520)
200 smart00382 AAA ATPases associa 98.9 5.2E-09 1.1E-13 100.7 10.7 127 853-987 3-147 (148)
201 TIGR00678 holB DNA polymerase 98.9 1.7E-08 3.7E-13 106.3 15.1 144 851-1021 13-184 (188)
202 PRK11388 DNA-binding transcrip 98.9 3.1E-09 6.8E-14 132.0 11.1 203 814-1037 322-554 (638)
203 KOG1969 DNA replication checkp 98.9 3.1E-08 6.7E-13 119.4 18.1 158 855-1033 329-511 (877)
204 PF01078 Mg_chelatase: Magnesi 98.9 7.5E-10 1.6E-14 118.2 3.8 46 815-876 1-46 (206)
205 smart00350 MCM minichromosome 98.9 2.4E-08 5.2E-13 121.0 17.2 175 818-1002 204-402 (509)
206 TIGR02031 BchD-ChlD magnesium 98.9 1.2E-08 2.6E-13 125.4 14.4 142 852-1001 16-175 (589)
207 PRK07399 DNA polymerase III su 98.9 2.1E-08 4.5E-13 114.5 15.1 181 815-1028 2-221 (314)
208 TIGR03015 pepcterm_ATPase puta 98.9 8.8E-08 1.9E-12 105.8 19.7 192 853-1084 44-267 (269)
209 PF06068 TIP49: TIP49 C-termin 98.9 3.7E-08 8E-13 112.5 16.6 64 816-888 23-88 (398)
210 TIGR00764 lon_rel lon-related 98.9 4.4E-08 9.5E-13 120.8 18.6 50 814-879 15-64 (608)
211 PRK11331 5-methylcytosine-spec 98.9 1.9E-08 4.2E-13 118.3 14.2 143 816-986 174-357 (459)
212 COG0470 HolB ATPase involved i 98.9 1.4E-08 3.1E-13 114.6 12.5 147 818-995 2-176 (325)
213 COG1219 ClpX ATP-dependent pro 98.8 1.4E-08 3.1E-13 112.7 11.3 111 819-929 63-180 (408)
214 PRK04132 replication factor C 98.8 3.1E-08 6.6E-13 124.7 15.5 158 850-1030 562-733 (846)
215 PF00158 Sigma54_activat: Sigm 98.8 3.5E-09 7.6E-14 110.4 5.7 138 819-978 1-154 (168)
216 KOG0745 Putative ATP-dependent 98.8 6.2E-08 1.3E-12 111.1 15.9 73 853-925 227-305 (564)
217 PF07726 AAA_3: ATPase family 98.8 7.1E-09 1.5E-13 102.8 7.3 118 854-979 1-130 (131)
218 PF05621 TniB: Bacterial TniB 98.8 1.1E-07 2.4E-12 106.7 17.6 178 853-1041 62-273 (302)
219 PRK13531 regulatory ATPase Rav 98.8 1.2E-07 2.5E-12 112.7 18.5 160 818-999 21-193 (498)
220 COG1220 HslU ATP-dependent pro 98.8 4.6E-08 1E-12 109.3 14.1 85 912-997 251-346 (444)
221 COG1239 ChlI Mg-chelatase subu 98.8 8.8E-08 1.9E-12 110.8 16.6 166 814-1002 14-234 (423)
222 PRK05707 DNA polymerase III su 98.8 8.2E-08 1.8E-12 110.2 16.1 151 851-1024 21-199 (328)
223 PF07724 AAA_2: AAA domain (Cd 98.8 1.7E-08 3.7E-13 105.6 9.3 114 851-967 2-130 (171)
224 PRK08058 DNA polymerase III su 98.8 1.3E-07 2.9E-12 108.6 17.0 149 815-998 3-180 (329)
225 TIGR02915 PEP_resp_reg putativ 98.7 3.6E-08 7.8E-13 117.1 11.4 202 816-1038 138-373 (445)
226 KOG2035 Replication factor C, 98.7 2.8E-07 6E-12 101.0 16.8 183 814-1027 10-227 (351)
227 TIGR00368 Mg chelatase-related 98.7 4.9E-08 1.1E-12 117.6 11.4 153 814-990 189-394 (499)
228 PRK10923 glnG nitrogen regulat 98.6 2E-07 4.4E-12 111.6 13.8 203 815-1038 136-372 (469)
229 TIGR00602 rad24 checkpoint pro 98.6 4.8E-07 1E-11 111.5 16.5 194 813-1029 80-324 (637)
230 KOG2227 Pre-initiation complex 98.6 1.8E-06 4E-11 100.5 19.7 238 818-1089 151-421 (529)
231 PRK06871 DNA polymerase III su 98.6 1.2E-06 2.7E-11 100.3 17.9 163 823-1023 8-198 (325)
232 PRK07993 DNA polymerase III su 98.6 1.1E-06 2.4E-11 101.2 17.5 153 850-1026 22-202 (334)
233 KOG1514 Origin recognition com 98.6 1.8E-06 3.9E-11 104.4 18.6 228 819-1087 398-659 (767)
234 PF13177 DNA_pol3_delta2: DNA 98.6 3.6E-07 7.7E-12 94.8 11.2 133 821-986 1-160 (162)
235 PRK11361 acetoacetate metaboli 98.6 4.9E-07 1.1E-11 107.7 13.8 176 853-1037 167-376 (457)
236 PRK08769 DNA polymerase III su 98.5 3E-06 6.5E-11 97.0 18.8 171 822-1027 9-207 (319)
237 PF00498 FHA: FHA domain; Int 98.5 3.8E-07 8.2E-12 80.4 8.1 68 22-92 1-68 (68)
238 PRK08116 hypothetical protein; 98.5 5.6E-07 1.2E-11 100.7 11.4 123 852-989 114-251 (268)
239 smart00763 AAA_PrkA PrkA AAA d 98.5 1.4E-06 3E-11 100.5 14.5 63 815-885 48-118 (361)
240 PRK09862 putative ATP-dependen 98.5 1.1E-06 2.3E-11 105.9 13.9 153 814-990 188-391 (506)
241 PTZ00111 DNA replication licen 98.5 4.3E-07 9.4E-12 114.1 10.8 175 818-1000 451-657 (915)
242 PRK06964 DNA polymerase III su 98.5 1.7E-06 3.7E-11 99.8 14.8 133 850-999 19-203 (342)
243 PRK15115 response regulator Gl 98.5 1.6E-06 3.6E-11 103.0 15.2 176 853-1037 158-367 (444)
244 PRK12377 putative replication 98.5 7.5E-07 1.6E-11 98.5 11.4 149 803-978 60-222 (248)
245 PRK13765 ATP-dependent proteas 98.5 1.4E-06 3.1E-11 107.6 14.1 49 813-877 27-75 (637)
246 TIGR01818 ntrC nitrogen regula 98.4 8E-07 1.7E-11 106.1 10.8 202 818-1040 135-370 (463)
247 PRK06090 DNA polymerase III su 98.4 5.3E-06 1.2E-10 94.9 16.9 144 822-998 8-178 (319)
248 COG0606 Predicted ATPase with 98.4 1.3E-07 2.8E-12 110.7 2.8 46 813-874 175-220 (490)
249 PRK07952 DNA replication prote 98.4 2.7E-06 5.8E-11 94.0 12.7 107 803-923 58-174 (244)
250 KOG0742 AAA+-type ATPase [Post 98.3 1.9E-06 4.2E-11 98.3 10.3 139 558-742 431-587 (630)
251 PF14532 Sigma54_activ_2: Sigm 98.3 4.3E-07 9.4E-12 91.2 4.4 106 853-988 22-137 (138)
252 COG3283 TyrR Transcriptional r 98.3 2.7E-06 5.7E-11 96.1 10.8 161 813-994 200-377 (511)
253 KOG0990 Replication factor C, 98.3 1.7E-06 3.6E-11 96.9 9.1 158 813-1004 37-207 (360)
254 cd00060 FHA Forkhead associate 98.3 2.2E-06 4.7E-11 80.4 8.5 88 11-102 12-101 (102)
255 KOG2680 DNA helicase TIP49, TB 98.3 1.1E-05 2.4E-10 89.4 14.9 130 911-1084 288-430 (454)
256 KOG1942 DNA helicase, TBP-inte 98.3 7.5E-06 1.6E-10 90.3 13.4 90 911-1018 296-399 (456)
257 PF01637 Arch_ATPase: Archaeal 98.3 2.1E-06 4.5E-11 91.6 9.2 180 820-1023 2-229 (234)
258 PRK10365 transcriptional regul 98.3 2.9E-06 6.4E-11 100.5 10.8 175 853-1036 163-371 (441)
259 PRK08181 transposase; Validate 98.3 2.8E-06 6.1E-11 95.1 9.3 69 853-923 107-179 (269)
260 PF00004 AAA: ATPase family as 98.2 6.7E-06 1.5E-10 80.2 10.6 55 557-614 45-111 (132)
261 PRK13406 bchD magnesium chelat 98.2 4.7E-06 1E-10 102.3 11.6 131 853-991 26-173 (584)
262 KOG1051 Chaperone HSP104 and r 98.2 2.3E-05 5E-10 98.8 17.8 127 818-966 563-710 (898)
263 PF03215 Rad17: Rad17 cell cyc 98.2 2.5E-05 5.3E-10 94.9 17.3 196 813-1029 15-264 (519)
264 PRK08699 DNA polymerase III su 98.2 9.5E-06 2.1E-10 93.3 11.7 132 850-998 19-183 (325)
265 PF13173 AAA_14: AAA domain 98.1 8.9E-06 1.9E-10 80.7 9.0 69 853-923 3-73 (128)
266 PRK06835 DNA replication prote 98.1 6.5E-06 1.4E-10 94.7 8.4 111 853-978 184-305 (329)
267 PF13401 AAA_22: AAA domain; P 98.1 1.6E-05 3.5E-10 78.0 9.4 72 853-924 5-100 (131)
268 PRK06526 transposase; Provisio 98.0 5.1E-06 1.1E-10 92.4 5.8 70 852-923 98-171 (254)
269 PRK08939 primosomal protein Dn 98.0 2.6E-05 5.7E-10 89.0 11.2 70 852-923 156-229 (306)
270 PF01695 IstB_IS21: IstB-like 98.0 4.1E-06 8.9E-11 88.3 4.2 69 852-922 47-119 (178)
271 COG1484 DnaC DNA replication p 98.0 2.2E-05 4.9E-10 87.3 10.2 70 852-923 105-179 (254)
272 KOG0744 AAA+-type ATPase [Post 98.0 1.1E-05 2.3E-10 90.4 6.6 75 310-389 130-204 (423)
273 COG1241 MCM2 Predicted ATPase 97.9 3.1E-05 6.7E-10 95.7 10.6 171 818-1003 287-486 (682)
274 PRK09183 transposase/IS protei 97.9 2E-05 4.3E-10 87.9 8.0 71 852-923 102-176 (259)
275 PRK06921 hypothetical protein; 97.9 1.8E-05 4E-10 88.5 7.7 68 852-922 117-188 (266)
276 PF12774 AAA_6: Hydrolytic ATP 97.9 6.3E-05 1.4E-09 82.6 11.4 131 853-996 33-176 (231)
277 cd01120 RecA-like_NTPases RecA 97.9 5.3E-05 1.2E-09 76.0 9.6 71 855-925 2-99 (165)
278 PF05729 NACHT: NACHT domain 97.9 8.9E-05 1.9E-09 75.0 10.9 140 854-1002 2-165 (166)
279 COG3284 AcoR Transcriptional a 97.9 2.9E-05 6.4E-10 93.9 8.2 176 853-1036 337-539 (606)
280 PF00493 MCM: MCM2/3/5 family 97.9 3E-06 6.4E-11 97.7 -0.3 174 818-1002 25-223 (331)
281 PRK05917 DNA polymerase III su 97.8 0.00022 4.8E-09 80.7 14.4 121 850-987 17-154 (290)
282 PF12775 AAA_7: P-loop contain 97.8 3.6E-05 7.7E-10 86.5 7.9 139 853-1002 34-195 (272)
283 KOG0482 DNA replication licens 97.8 0.00017 3.7E-09 84.7 12.8 206 818-1037 343-589 (721)
284 PF00931 NB-ARC: NB-ARC domain 97.7 0.00024 5.1E-09 79.3 12.5 157 851-1029 18-202 (287)
285 PRK07132 DNA polymerase III su 97.7 0.001 2.3E-08 75.8 17.4 125 852-998 18-160 (299)
286 KOG0478 DNA replication licens 97.7 0.00021 4.6E-09 86.6 12.1 172 818-999 430-625 (804)
287 PRK07276 DNA polymerase III su 97.7 0.0012 2.6E-08 74.9 17.1 127 850-996 22-171 (290)
288 KOG0480 DNA replication licens 97.6 0.00031 6.7E-09 84.7 12.0 215 795-1034 332-571 (764)
289 KOG1970 Checkpoint RAD17-RFC c 97.6 0.0022 4.7E-08 76.8 18.4 197 814-1033 79-316 (634)
290 COG4650 RtcR Sigma54-dependent 97.6 9.8E-05 2.1E-09 81.6 6.8 133 853-995 209-367 (531)
291 PRK05818 DNA polymerase III su 97.6 0.00076 1.6E-08 75.1 13.6 122 849-987 4-147 (261)
292 COG1618 Predicted nucleotide k 97.5 0.001 2.3E-08 68.7 12.5 25 852-876 5-29 (179)
293 KOG2228 Origin recognition com 97.5 0.00045 9.7E-09 78.3 10.2 161 818-1000 25-219 (408)
294 TIGR00763 lon ATP-dependent pr 97.5 0.0015 3.3E-08 83.6 15.9 34 360-395 347-380 (775)
295 COG3267 ExeA Type II secretory 97.5 0.0028 6E-08 70.0 15.3 174 854-1039 53-255 (269)
296 PLN03210 Resistant to P. syrin 97.4 0.0023 5E-08 85.4 17.0 53 814-878 181-233 (1153)
297 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.0005 1.1E-08 80.3 8.9 103 849-967 59-168 (362)
298 TIGR02237 recomb_radB DNA repa 97.4 0.00073 1.6E-08 72.3 9.4 73 853-925 13-111 (209)
299 cd01124 KaiC KaiC is a circadi 97.3 0.0011 2.4E-08 69.2 10.1 71 855-925 2-109 (187)
300 COG5271 MDN1 AAA ATPase contai 97.3 0.00035 7.7E-09 90.0 6.6 139 853-999 1544-1702(4600)
301 PF00910 RNA_helicase: RNA hel 97.3 0.00024 5.2E-09 68.6 4.2 23 855-877 1-23 (107)
302 PF14516 AAA_35: AAA-like doma 97.3 0.003 6.5E-08 73.0 13.9 164 851-1022 30-233 (331)
303 PHA00729 NTP-binding motif con 97.3 0.00056 1.2E-08 74.7 7.4 27 853-879 18-44 (226)
304 TIGR01618 phage_P_loop phage n 97.3 0.00024 5.2E-09 77.5 4.4 75 849-925 9-95 (220)
305 KOG0477 DNA replication licens 97.3 0.00024 5.2E-09 85.2 4.6 166 795-983 436-628 (854)
306 TIGR03354 VI_FHA type VI secre 97.3 0.00052 1.1E-08 81.0 7.4 77 13-94 17-97 (396)
307 CHL00181 cbbX CbbX; Provisiona 97.2 0.0011 2.4E-08 75.1 9.8 127 574-753 124-260 (287)
308 PF13207 AAA_17: AAA domain; P 97.2 0.00031 6.7E-09 68.2 4.1 31 855-885 2-32 (121)
309 KOG1051 Chaperone HSP104 and r 97.2 0.0024 5.1E-08 81.3 12.4 139 853-1002 209-365 (898)
310 PF05707 Zot: Zonular occluden 97.2 0.00098 2.1E-08 71.1 7.8 121 855-985 3-144 (193)
311 KOG1968 Replication factor C, 97.1 0.00098 2.1E-08 85.0 8.5 161 855-1034 360-533 (871)
312 KOG2170 ATPase of the AAA+ sup 97.1 0.0075 1.6E-07 67.9 14.1 97 819-923 84-190 (344)
313 PRK08118 topology modulation p 97.1 0.0011 2.3E-08 69.3 7.0 33 853-885 2-34 (167)
314 cd01121 Sms Sms (bacterial rad 97.1 0.0024 5.3E-08 75.0 10.5 96 851-946 81-195 (372)
315 PHA02624 large T antigen; Prov 97.1 0.00058 1.2E-08 83.3 5.3 118 853-986 432-561 (647)
316 PRK00771 signal recognition pa 97.1 0.039 8.4E-07 66.3 20.5 201 851-1086 94-335 (437)
317 PRK11823 DNA repair protein Ra 97.1 0.0027 5.8E-08 76.4 10.8 96 851-946 79-193 (446)
318 PF03266 NTPase_1: NTPase; In 97.0 0.00041 8.9E-09 72.7 3.2 27 854-880 1-30 (168)
319 PRK07261 topology modulation p 97.0 0.0017 3.6E-08 68.1 7.3 33 854-886 2-34 (171)
320 PRK00131 aroK shikimate kinase 96.9 0.00086 1.9E-08 68.9 4.6 34 851-884 3-36 (175)
321 PRK09361 radB DNA repair and r 96.9 0.0038 8.2E-08 67.7 9.2 35 852-886 23-60 (225)
322 PRK04841 transcriptional regul 96.9 0.017 3.8E-07 74.7 16.7 153 853-1023 33-220 (903)
323 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0041 8.8E-08 69.8 9.5 93 814-921 57-159 (264)
324 PRK15455 PrkA family serine pr 96.8 0.0016 3.4E-08 79.3 6.4 63 815-885 74-137 (644)
325 PRK08533 flagellar accessory p 96.8 0.0085 1.8E-07 65.8 11.3 73 852-924 24-130 (230)
326 TIGR02880 cbbX_cfxQ probable R 96.8 0.0084 1.8E-07 68.0 11.1 81 573-691 122-208 (284)
327 TIGR02012 tigrfam_recA protein 96.7 0.007 1.5E-07 69.7 10.0 74 853-926 56-148 (321)
328 KOG0479 DNA replication licens 96.7 0.0057 1.2E-07 73.4 9.3 170 818-1000 302-498 (818)
329 cd01131 PilT Pilus retraction 96.7 0.0036 7.8E-08 67.1 6.8 67 854-920 3-83 (198)
330 PRK00080 ruvB Holliday junctio 96.6 0.024 5.3E-07 65.3 13.7 59 320-392 23-81 (328)
331 cd00983 recA RecA is a bacter 96.6 0.0086 1.9E-07 69.1 9.7 74 853-926 56-148 (325)
332 PF13671 AAA_33: AAA domain; P 96.6 0.0039 8.4E-08 62.1 6.1 27 855-881 2-28 (143)
333 PF13191 AAA_16: AAA ATPase do 96.6 0.0021 4.6E-08 66.5 4.4 59 819-888 2-63 (185)
334 PRK13947 shikimate kinase; Pro 96.6 0.0021 4.6E-08 66.4 4.2 31 854-884 3-33 (171)
335 PRK04296 thymidine kinase; Pro 96.5 0.016 3.6E-07 61.7 10.9 69 854-923 4-90 (190)
336 COG1373 Predicted ATPase (AAA+ 96.5 0.016 3.4E-07 68.9 11.7 121 854-994 39-161 (398)
337 TIGR02881 spore_V_K stage V sp 96.5 0.026 5.5E-07 63.0 12.7 34 351-386 33-66 (261)
338 PRK03839 putative kinase; Prov 96.5 0.0022 4.7E-08 67.2 4.0 31 854-884 2-32 (180)
339 PRK13695 putative NTPase; Prov 96.5 0.012 2.6E-07 61.4 9.6 23 854-876 2-24 (174)
340 PF06309 Torsin: Torsin; Inte 96.5 0.011 2.4E-07 59.2 8.5 52 818-876 26-77 (127)
341 cd01394 radB RadB. The archaea 96.5 0.017 3.7E-07 62.3 10.8 34 853-886 20-56 (218)
342 PF13604 AAA_30: AAA domain; P 96.5 0.04 8.6E-07 59.1 13.4 34 853-886 19-55 (196)
343 cd00464 SK Shikimate kinase (S 96.4 0.0028 6E-08 64.0 4.1 31 854-884 1-31 (154)
344 PRK09376 rho transcription ter 96.4 0.0066 1.4E-07 71.3 7.6 72 853-924 170-269 (416)
345 cd00544 CobU Adenosylcobinamid 96.4 0.014 3E-07 61.4 9.3 71 855-927 2-89 (169)
346 PRK00625 shikimate kinase; Pro 96.4 0.003 6.6E-08 66.5 4.2 31 854-884 2-32 (173)
347 PRK13948 shikimate kinase; Pro 96.4 0.0034 7.5E-08 66.7 4.6 36 849-884 7-42 (182)
348 KOG3347 Predicted nucleotide k 96.4 0.0026 5.5E-08 65.0 3.4 32 853-884 8-39 (176)
349 PRK10536 hypothetical protein; 96.4 0.031 6.7E-07 62.5 11.9 45 815-875 53-97 (262)
350 COG5271 MDN1 AAA ATPase contai 96.3 0.0087 1.9E-07 78.1 8.3 136 854-1000 890-1047(4600)
351 smart00240 FHA Forkhead associ 96.3 0.0058 1.3E-07 50.7 4.8 51 22-75 1-52 (52)
352 PF06745 KaiC: KaiC; InterPro 96.3 0.026 5.6E-07 61.3 11.2 73 851-923 18-127 (226)
353 PRK05800 cobU adenosylcobinami 96.3 0.019 4.2E-07 60.3 9.7 68 854-925 3-90 (170)
354 PRK14532 adenylate kinase; Pro 96.3 0.0035 7.5E-08 66.1 4.1 30 854-883 2-31 (188)
355 TIGR00416 sms DNA repair prote 96.3 0.017 3.8E-07 69.6 10.5 75 851-925 93-184 (454)
356 PF00437 T2SE: Type II/IV secr 96.3 0.007 1.5E-07 67.6 6.7 97 813-921 100-207 (270)
357 PRK13949 shikimate kinase; Pro 96.3 0.0035 7.7E-08 65.6 3.9 32 853-884 2-33 (169)
358 PF04665 Pox_A32: Poxvirus A32 96.3 0.048 1.1E-06 60.4 12.9 132 851-999 12-169 (241)
359 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.0035 7.6E-08 65.5 3.9 33 855-889 2-34 (183)
360 PHA02774 E1; Provisional 96.3 0.031 6.8E-07 68.4 12.2 33 853-885 435-468 (613)
361 PRK06217 hypothetical protein; 96.3 0.0041 8.9E-08 65.6 4.3 31 854-884 3-33 (183)
362 COG1485 Predicted ATPase [Gene 96.2 0.036 7.8E-07 63.9 12.0 100 850-966 63-170 (367)
363 PRK14974 cell division protein 96.2 0.033 7.1E-07 64.7 11.9 35 852-886 140-177 (336)
364 PF10236 DAP3: Mitochondrial r 96.2 0.18 4E-06 57.9 17.9 127 900-1027 142-307 (309)
365 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.03 6.6E-07 61.6 11.1 39 846-885 16-57 (237)
366 TIGR02525 plasmid_TraJ plasmid 96.2 0.014 3E-07 68.7 8.7 68 854-921 151-235 (372)
367 PRK12723 flagellar biosynthesi 96.2 0.028 6.1E-07 66.4 11.3 127 852-992 174-327 (388)
368 TIGR02858 spore_III_AA stage I 96.2 0.0092 2E-07 67.3 7.0 68 853-920 112-203 (270)
369 cd01128 rho_factor Transcripti 96.2 0.036 7.9E-07 61.8 11.6 26 853-878 17-42 (249)
370 TIGR02533 type_II_gspE general 96.2 0.017 3.8E-07 70.2 9.8 94 813-921 218-321 (486)
371 KOG0481 DNA replication licens 96.2 0.015 3.1E-07 69.2 8.6 164 818-992 332-519 (729)
372 PRK14531 adenylate kinase; Pro 96.2 0.0049 1.1E-07 65.0 4.4 31 853-883 3-33 (183)
373 COG3854 SpoIIIAA ncharacterize 96.2 0.012 2.7E-07 64.0 7.3 71 853-923 138-230 (308)
374 PRK06067 flagellar accessory p 96.2 0.043 9.3E-07 60.1 11.8 74 851-924 24-133 (234)
375 PRK06762 hypothetical protein; 96.2 0.012 2.5E-07 60.7 7.0 37 853-889 3-39 (166)
376 PRK05973 replicative DNA helic 96.2 0.04 8.6E-07 61.0 11.5 37 850-886 62-101 (237)
377 cd03283 ABC_MutS-like MutS-lik 96.2 0.027 5.8E-07 60.6 9.9 69 853-921 26-115 (199)
378 cd00984 DnaB_C DnaB helicase C 96.1 0.035 7.7E-07 60.6 11.1 36 851-886 12-51 (242)
379 PRK10867 signal recognition pa 96.1 0.14 3.1E-06 61.4 16.9 73 851-923 99-195 (433)
380 PRK14722 flhF flagellar biosyn 96.1 0.015 3.2E-07 68.4 8.4 24 853-876 138-161 (374)
381 PRK13764 ATPase; Provisional 96.1 0.015 3.3E-07 72.0 8.8 68 853-921 258-334 (602)
382 KOG2543 Origin recognition com 96.1 0.032 6.9E-07 64.8 10.7 59 818-887 7-65 (438)
383 cd01428 ADK Adenylate kinase ( 96.1 0.0046 1E-07 64.9 3.8 29 855-883 2-30 (194)
384 cd02020 CMPK Cytidine monophos 96.1 0.005 1.1E-07 61.4 3.9 30 855-884 2-31 (147)
385 PRK09354 recA recombinase A; P 96.1 0.031 6.8E-07 65.1 10.7 73 853-925 61-152 (349)
386 cd00046 DEXDc DEAD-like helica 96.1 0.011 2.4E-07 56.7 5.9 23 854-876 2-24 (144)
387 PRK14530 adenylate kinase; Pro 96.1 0.0058 1.3E-07 66.1 4.3 30 854-883 5-34 (215)
388 TIGR01420 pilT_fam pilus retra 96.1 0.011 2.5E-07 68.6 7.0 68 853-920 123-204 (343)
389 TIGR02782 TrbB_P P-type conjug 96.1 0.02 4.2E-07 65.6 8.8 68 853-920 133-213 (299)
390 cd02021 GntK Gluconate kinase 96.0 0.0056 1.2E-07 61.9 3.9 28 855-882 2-29 (150)
391 COG5245 DYN1 Dynein, heavy cha 96.0 0.035 7.6E-07 72.5 11.2 139 851-1002 1493-1660(3164)
392 PF07693 KAP_NTPase: KAP famil 96.0 0.39 8.5E-06 54.7 19.1 28 850-877 18-45 (325)
393 PRK10436 hypothetical protein; 96.0 0.024 5.2E-07 68.5 9.6 94 813-921 194-297 (462)
394 COG2804 PulE Type II secretory 96.0 0.017 3.8E-07 69.3 8.1 98 808-921 229-337 (500)
395 cd01393 recA_like RecA is a b 96.0 0.033 7.1E-07 60.2 9.7 37 851-887 18-63 (226)
396 PRK13407 bchI magnesium chelat 95.9 0.23 5E-06 57.8 16.7 87 663-750 187-289 (334)
397 PRK06581 DNA polymerase III su 95.9 0.21 4.6E-06 55.4 15.3 133 852-1003 15-164 (263)
398 cd01122 GP4d_helicase GP4d_hel 95.9 0.04 8.7E-07 61.4 10.2 35 851-885 29-67 (271)
399 PTZ00088 adenylate kinase 1; P 95.9 0.0074 1.6E-07 66.4 4.2 32 853-884 7-38 (229)
400 COG0703 AroK Shikimate kinase 95.9 0.0064 1.4E-07 63.9 3.5 32 853-884 3-34 (172)
401 TIGR00635 ruvB Holliday juncti 95.9 0.072 1.6E-06 60.4 12.2 33 360-394 30-62 (305)
402 TIGR01313 therm_gnt_kin carboh 95.8 0.0065 1.4E-07 62.4 3.4 28 855-882 1-28 (163)
403 PRK08233 hypothetical protein; 95.8 0.042 9.1E-07 57.0 9.5 32 853-884 4-36 (182)
404 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.062 1.3E-06 58.4 11.1 21 853-873 30-50 (213)
405 cd01123 Rad51_DMC1_radA Rad51_ 95.8 0.034 7.4E-07 60.5 9.1 73 853-925 20-129 (235)
406 PF00448 SRP54: SRP54-type pro 95.8 0.056 1.2E-06 58.2 10.4 71 852-922 1-94 (196)
407 PRK03731 aroL shikimate kinase 95.8 0.0095 2.1E-07 61.7 4.4 32 853-884 3-34 (171)
408 PRK14528 adenylate kinase; Pro 95.8 0.0087 1.9E-07 63.5 4.2 31 853-883 2-32 (186)
409 TIGR02538 type_IV_pilB type IV 95.8 0.029 6.4E-07 69.5 9.3 94 813-921 292-395 (564)
410 PRK06547 hypothetical protein; 95.8 0.0096 2.1E-07 62.7 4.4 34 851-884 14-47 (172)
411 cd00227 CPT Chloramphenicol (C 95.8 0.0077 1.7E-07 63.0 3.7 34 853-886 3-36 (175)
412 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.063 1.4E-06 60.1 10.9 36 851-886 35-73 (259)
413 TIGR02688 conserved hypothetic 95.7 0.011 2.4E-07 69.9 5.1 23 853-875 210-232 (449)
414 smart00487 DEXDc DEAD-like hel 95.7 0.049 1.1E-06 55.7 9.3 24 853-876 25-49 (201)
415 PRK13900 type IV secretion sys 95.7 0.029 6.2E-07 65.1 8.3 69 853-921 161-245 (332)
416 TIGR01360 aden_kin_iso1 adenyl 95.7 0.01 2.2E-07 62.0 4.2 31 853-883 4-34 (188)
417 cd02027 APSK Adenosine 5'-phos 95.7 0.026 5.7E-07 57.7 7.1 66 855-920 2-79 (149)
418 PRK13946 shikimate kinase; Pro 95.7 0.0093 2E-07 63.0 3.8 32 853-884 11-42 (184)
419 COG0563 Adk Adenylate kinase a 95.7 0.011 2.3E-07 62.8 4.2 28 854-881 2-29 (178)
420 PRK02496 adk adenylate kinase; 95.7 0.01 2.2E-07 62.4 4.1 30 854-883 3-32 (184)
421 PLN02200 adenylate kinase fami 95.7 0.012 2.6E-07 64.9 4.8 38 851-890 42-79 (234)
422 COG1066 Sms Predicted ATP-depe 95.7 0.072 1.6E-06 62.6 11.1 96 851-946 92-205 (456)
423 PRK05057 aroK shikimate kinase 95.7 0.011 2.4E-07 62.0 4.3 33 853-885 5-37 (172)
424 KOG3928 Mitochondrial ribosome 95.6 0.28 6E-06 57.8 15.7 50 981-1031 405-458 (461)
425 PRK08154 anaerobic benzoate ca 95.6 0.02 4.3E-07 65.7 6.3 36 849-884 130-165 (309)
426 TIGR01351 adk adenylate kinase 95.6 0.011 2.4E-07 63.7 3.9 29 855-883 2-30 (210)
427 COG4619 ABC-type uncharacteriz 95.6 0.036 7.7E-07 58.1 7.3 26 851-876 28-53 (223)
428 PRK00279 adk adenylate kinase; 95.5 0.013 2.7E-07 63.5 4.2 30 854-883 2-31 (215)
429 smart00534 MUTSac ATPase domai 95.5 0.096 2.1E-06 55.5 10.8 19 855-873 2-20 (185)
430 TIGR00390 hslU ATP-dependent p 95.5 0.016 3.4E-07 68.8 5.2 77 327-407 15-94 (441)
431 COG1716 FOG: FHA domain [Signa 95.5 0.041 8.8E-07 58.0 7.9 78 13-96 82-159 (191)
432 COG4088 Predicted nucleotide k 95.5 0.057 1.2E-06 58.2 8.7 23 854-876 3-25 (261)
433 KOG2383 Predicted ATPase [Gene 95.5 0.071 1.5E-06 62.3 10.1 28 849-876 111-138 (467)
434 COG1102 Cmk Cytidylate kinase 95.5 0.012 2.7E-07 61.0 3.6 28 855-882 3-30 (179)
435 cd01130 VirB11-like_ATPase Typ 95.5 0.032 6.9E-07 59.1 6.9 68 853-920 26-109 (186)
436 TIGR03574 selen_PSTK L-seryl-t 95.4 0.029 6.2E-07 62.1 6.8 34 855-888 2-38 (249)
437 PRK04328 hypothetical protein; 95.4 0.11 2.5E-06 57.7 11.5 35 851-885 22-59 (249)
438 PRK13894 conjugal transfer ATP 95.4 0.05 1.1E-06 62.8 8.9 68 853-920 149-228 (319)
439 PF13238 AAA_18: AAA domain; P 95.4 0.012 2.6E-07 57.0 3.3 22 855-876 1-22 (129)
440 PRK13833 conjugal transfer pro 95.4 0.05 1.1E-06 62.9 8.8 68 853-920 145-224 (323)
441 PF13481 AAA_25: AAA domain; P 95.4 0.059 1.3E-06 56.7 8.7 73 854-926 34-156 (193)
442 PRK05342 clpX ATP-dependent pr 95.4 0.022 4.7E-07 68.0 6.0 86 311-399 59-145 (412)
443 PRK10416 signal recognition pa 95.4 0.24 5.2E-06 57.3 14.2 35 851-885 113-150 (318)
444 COG2909 MalT ATP-dependent tra 95.4 0.16 3.6E-06 64.1 13.6 153 852-1023 37-228 (894)
445 PF13479 AAA_24: AAA domain 95.4 0.054 1.2E-06 58.7 8.6 20 853-872 4-23 (213)
446 PRK11889 flhF flagellar biosyn 95.4 0.11 2.4E-06 61.4 11.5 72 852-923 241-332 (436)
447 cd03243 ABC_MutS_homologs The 95.4 0.1 2.3E-06 55.8 10.6 21 853-873 30-50 (202)
448 TIGR03880 KaiC_arch_3 KaiC dom 95.4 0.13 2.8E-06 55.9 11.4 37 851-887 15-54 (224)
449 TIGR00064 ftsY signal recognit 95.3 0.4 8.7E-06 54.3 15.4 36 851-886 71-109 (272)
450 PRK14527 adenylate kinase; Pro 95.3 0.015 3.3E-07 61.6 3.8 32 852-883 6-37 (191)
451 cd03115 SRP The signal recogni 95.3 0.066 1.4E-06 55.6 8.5 33 855-887 3-38 (173)
452 cd03280 ABC_MutS2 MutS2 homolo 95.3 0.11 2.4E-06 55.5 10.4 21 853-873 29-49 (200)
453 PRK04040 adenylate kinase; Pro 95.3 0.019 4.1E-07 61.3 4.4 30 852-881 2-33 (188)
454 PRK06696 uridine kinase; Valid 95.2 0.044 9.5E-07 59.8 7.2 38 852-889 22-62 (223)
455 COG2805 PilT Tfp pilus assembl 95.2 0.045 9.8E-07 61.9 7.2 68 855-922 128-209 (353)
456 PF06414 Zeta_toxin: Zeta toxi 95.2 0.055 1.2E-06 57.9 7.7 41 851-891 14-55 (199)
457 TIGR02788 VirB11 P-type DNA tr 95.1 0.03 6.5E-07 64.2 5.9 70 852-921 144-228 (308)
458 PRK04182 cytidylate kinase; Pr 95.1 0.019 4.2E-07 59.4 4.0 29 854-882 2-30 (180)
459 PF00406 ADK: Adenylate kinase 95.1 0.018 4E-07 58.6 3.7 32 857-890 1-32 (151)
460 cd03216 ABC_Carb_Monos_I This 95.1 0.077 1.7E-06 55.0 8.4 71 851-921 25-110 (163)
461 PLN02674 adenylate kinase 95.1 0.021 4.5E-07 63.5 4.4 33 851-883 30-62 (244)
462 COG1936 Predicted nucleotide k 95.1 0.015 3.3E-07 60.9 3.0 30 854-884 2-31 (180)
463 PRK13851 type IV secretion sys 95.1 0.028 6.1E-07 65.5 5.5 69 852-920 162-245 (344)
464 PF09848 DUF2075: Uncharacteri 95.1 0.029 6.2E-07 65.4 5.6 23 854-876 3-25 (352)
465 TIGR00767 rho transcription te 95.1 0.064 1.4E-06 63.4 8.4 25 853-877 169-193 (415)
466 PRK00149 dnaA chromosomal repl 95.0 0.057 1.2E-06 65.1 8.2 57 317-387 117-173 (450)
467 TIGR01448 recD_rel helicase, p 95.0 0.089 1.9E-06 67.1 10.2 98 854-968 340-456 (720)
468 PTZ00202 tuzin; Provisional 95.0 0.45 9.7E-06 57.0 15.0 60 816-886 261-320 (550)
469 PRK01184 hypothetical protein; 95.0 0.021 4.5E-07 60.0 3.8 29 854-883 3-31 (184)
470 TIGR02173 cyt_kin_arch cytidyl 95.0 0.022 4.8E-07 58.5 3.9 29 855-883 3-31 (171)
471 PRK12724 flagellar biosynthesi 95.0 0.27 5.9E-06 58.7 13.2 34 853-886 224-261 (432)
472 COG1855 ATPase (PilT family) [ 95.0 0.025 5.4E-07 66.6 4.5 112 724-876 174-287 (604)
473 TIGR02655 circ_KaiC circadian 94.9 0.12 2.6E-06 62.9 10.6 74 851-924 262-366 (484)
474 TIGR02236 recomb_radA DNA repa 94.9 0.13 2.9E-06 58.8 10.2 35 853-887 96-139 (310)
475 PRK04301 radA DNA repair and r 94.9 0.12 2.5E-06 59.6 9.8 35 853-887 103-146 (317)
476 PF13521 AAA_28: AAA domain; P 94.9 0.024 5.3E-07 58.3 3.9 26 855-881 2-27 (163)
477 PRK09519 recA DNA recombinatio 94.8 0.14 3.1E-06 65.2 11.1 74 852-925 60-152 (790)
478 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.21 4.5E-06 54.4 11.1 35 851-885 19-56 (229)
479 PF01583 APS_kinase: Adenylyls 94.8 0.052 1.1E-06 56.4 6.1 38 853-890 3-43 (156)
480 PF08433 KTI12: Chromatin asso 94.8 0.083 1.8E-06 59.7 8.1 70 854-923 3-82 (270)
481 PF13245 AAA_19: Part of AAA d 94.8 0.046 1E-06 50.0 4.9 23 854-876 12-35 (76)
482 TIGR00382 clpX endopeptidase C 94.8 0.047 1E-06 65.0 6.3 84 312-398 66-152 (413)
483 COG0541 Ffh Signal recognition 94.8 4.8 0.0001 48.2 22.4 204 850-1085 98-341 (451)
484 PHA02530 pseT polynucleotide k 94.7 0.027 5.9E-07 63.7 4.1 30 853-882 3-33 (300)
485 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.12 2.6E-06 52.8 8.5 71 851-922 24-109 (157)
486 KOG0245 Kinesin-like protein [ 94.7 0.058 1.3E-06 68.5 7.0 79 19-104 476-557 (1221)
487 cd02019 NK Nucleoside/nucleoti 94.7 0.035 7.7E-07 49.4 3.9 22 855-876 2-23 (69)
488 TIGR02524 dot_icm_DotB Dot/Icm 94.7 0.085 1.9E-06 61.9 8.2 69 853-921 135-222 (358)
489 PF05272 VirE: Virulence-assoc 94.7 0.057 1.2E-06 58.2 6.1 105 853-978 53-162 (198)
490 PF13086 AAA_11: AAA domain; P 94.7 0.025 5.4E-07 60.2 3.4 22 855-876 20-41 (236)
491 cd01125 repA Hexameric Replica 94.6 0.18 3.9E-06 55.5 10.1 21 855-875 4-24 (239)
492 PF08423 Rad51: Rad51; InterP 94.6 0.082 1.8E-06 59.2 7.5 108 855-964 41-185 (256)
493 PRK14526 adenylate kinase; Pro 94.6 0.034 7.4E-07 60.5 4.3 29 854-882 2-30 (211)
494 PF01745 IPT: Isopentenyl tran 94.6 0.036 7.8E-07 60.1 4.3 38 854-891 3-40 (233)
495 PRK00889 adenylylsulfate kinas 94.6 0.12 2.6E-06 53.9 8.2 36 852-887 4-42 (175)
496 PF02562 PhoH: PhoH-like prote 94.6 0.081 1.8E-06 57.4 7.0 23 854-876 21-43 (205)
497 TIGR03499 FlhF flagellar biosy 94.5 0.18 3.9E-06 57.2 10.0 36 852-887 194-234 (282)
498 PF10443 RNA12: RNA12 protein; 94.5 1.1 2.4E-05 53.4 16.6 34 853-888 18-53 (431)
499 TIGR01526 nadR_NMN_Atrans nico 94.5 0.062 1.3E-06 62.2 6.3 33 853-885 163-195 (325)
500 TIGR01613 primase_Cterm phage/ 94.4 0.17 3.7E-06 57.9 9.7 85 822-921 54-138 (304)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-65 Score=584.82 Aligned_cols=554 Identities=31% Similarity=0.455 Sum_probs=427.4
Q ss_pred CCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001227 314 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 393 (1119)
Q Consensus 314 ~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~l 393 (1119)
....+|+|..+--. +.|-.-|..-. .|++|+++-.|+--.+ .+.+||-||||+ ...+||.|+|.+++++++-+
T Consensus 182 ~~~snv~f~diGG~--d~~~~el~~li-~~i~~Pe~~~~lGv~P--prGvLlHGPPGC--GKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL--DKTLAELCELI-IHIKHPEVFSSLGVRP--PRGVLLHGPPGC--GKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh--HHHHHHHHHHH-HHhcCchhHhhcCCCC--CCceeeeCCCCc--cHHHHHHHHhhhcCCceEee
Confidence 45668899998876 55555555544 4799999855543333 478999999998 79999999999999999988
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce
Q 001227 394 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 473 (1119)
Q Consensus 394 Ds~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 473 (1119)
-...+-+|.+.|+|
T Consensus 255 sApeivSGvSGESE------------------------------------------------------------------ 268 (802)
T KOG0733|consen 255 SAPEIVSGVSGESE------------------------------------------------------------------ 268 (802)
T ss_pred cchhhhcccCcccH------------------------------------------------------------------
Confidence 76665555444332
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001227 474 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 553 (1119)
Q Consensus 474 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 553 (1119)
T Consensus 269 -------------------------------------------------------------------------------- 268 (802)
T KOG0733|consen 269 -------------------------------------------------------------------------------- 268 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-----cChhhHHHHHH----HHhcCC------CCEEEEeeccCCCcc
Q 001227 554 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT-----GNNDAYGALKS----KLENLP------SNVVVIGSHTQLDSR 618 (1119)
Q Consensus 554 ~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~-----~~~~~~~~l~~----~L~~L~------g~vvvIgs~~~~d~~ 618 (1119)
-.|++||+-+.+ ..|.||||||||. +. .+.++-..|++ -++.|. .+||||||||
T Consensus 269 --kkiRelF~~A~~---~aPcivFiDeIDA-I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn----- 337 (802)
T KOG0733|consen 269 --KKIRELFDQAKS---NAPCIVFIDEIDA-ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN----- 337 (802)
T ss_pred --HHHHHHHHHHhc---cCCeEEEeecccc-cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC-----
Confidence 135567777777 8999999999999 55 23444444444 444442 3899999999
Q ss_pred cccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhh
Q 001227 619 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 696 (1119)
Q Consensus 619 k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lp 696 (1119)
+||++|+ |||| ||++++.+..|
T Consensus 338 -------------------------RPDslDp-------------------------------aLRRaGRFdrEI~l~vP 361 (802)
T KOG0733|consen 338 -------------------------RPDSLDP-------------------------------ALRRAGRFDREICLGVP 361 (802)
T ss_pred -------------------------CCcccCH-------------------------------HHhccccccceeeecCC
Confidence 8888998 9999 99999999999
Q ss_pred hhhcccchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCC-CCccccc----------
Q 001227 697 TLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKIS---------- 764 (1119)
Q Consensus 697 d~~gR~~Il~IhT~-l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id---------- 764 (1119)
+..+|..||+|.-+ |+-.+ +.+...||.+|.||-|||+.+||.+|+..|+.|..++... ..+..++
T Consensus 362 ~e~aR~~IL~~~~~~lrl~g--~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~ 439 (802)
T KOG0733|consen 362 SETAREEILRIICRGLRLSG--DFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEE 439 (802)
T ss_pred chHHHHHHHHHHHhhCCCCC--CcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccc
Confidence 99999999999876 65555 7899999999999999999999999999999997664321 1111111
Q ss_pred -ccchhhhHH-----HHH----h-hhhhhhhhhhhhhh--hcchhHHHHhhhcCCCCC-------CCCCCCcccccCcHH
Q 001227 765 -TESIMYGLN-----ILQ----G-IQSESKSLKKSLKD--VVTENEFEKKLLADVIPP-------SDIGVTFDDIGALEN 824 (1119)
Q Consensus 765 -~~si~~~~~-----df~----~-a~~eik~~~~slk~--iv~~~e~~k~ll~~vip~-------~e~~~sfddI~G~e~ 824 (1119)
..+++.... ++. . .++...+....... .+..++|+..+. .+-|. .-+.++|+|||++++
T Consensus 440 d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~-~iQPSakREGF~tVPdVtW~dIGaL~~ 518 (802)
T KOG0733|consen 440 DQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALS-KIQPSAKREGFATVPDVTWDDIGALEE 518 (802)
T ss_pred hhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHH-hcCcchhcccceecCCCChhhcccHHH
Confidence 111211000 000 0 00111111110000 122345555442 11111 123789999999999
Q ss_pred HHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHH
Q 001227 825 VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVF 904 (1119)
Q Consensus 825 ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF 904 (1119)
++.+|..++.+|+++|++|...|+.. |.||||+||||||||.||+|+|++.|.+|+.|.+++|+++|+|++|..++++|
T Consensus 519 vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vF 597 (802)
T KOG0733|consen 519 VRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVF 597 (802)
T ss_pred HHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999765 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--cccccc
Q 001227 905 SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL 982 (1119)
Q Consensus 905 ~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I 982 (1119)
..|+...|||||+||||.|.+.|...+ .....+++++|++.|||+.. +..|.|||+||+|+.+|++++| ||+..+
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlDk~L 674 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLDKLL 674 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcCCCccCcee
Confidence 999999999999999999999887644 66778999999999999964 4789999999999999999999 999999
Q ss_pred ccCCCCHHHHHHHHHHHHh--hcccCChhcHHHHHHHcC--CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccC
Q 001227 983 MVNLPDAPNREKIIRVILA--KEELASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1058 (1119)
Q Consensus 983 ~v~lPd~eeR~eILk~ll~--k~~l~~d~dl~~LA~~Te--Gysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~ 1058 (1119)
++++|+.++|.+||+.+.+ +..+.+++|+++||..+. ||+|+||..||++|...|+++.+...+. +.
T Consensus 675 yV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~--------~~- 745 (802)
T KOG0733|consen 675 YVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDS--------SE- 745 (802)
T ss_pred eecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccc--------cC-
Confidence 9999999999999999999 778889999999998887 9999999999999999999987653221 11
Q ss_pred CCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcC
Q 001227 1059 SPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1106 (1119)
Q Consensus 1059 ~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~ 1106 (1119)
...........+++.||++|+++++||++..-. ..+...+..+|+
T Consensus 746 -~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr--~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 746 -DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDR--KKYDRLNKSRSL 790 (802)
T ss_pred -cccceeeeeeeecHHHHHHHHHhcCCCccHHHH--HHHHHHhhhhcc
Confidence 000000113468999999999999999986533 334444444443
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-61 Score=562.78 Aligned_cols=391 Identities=32% Similarity=0.540 Sum_probs=346.5
Q ss_pred CC-CeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCCCCceeeccCcchhhh
Q 001227 571 SS-PLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTAL 639 (1119)
Q Consensus 571 ~~-p~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L~--g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ 639 (1119)
.+ |.||||+|+|. ++. ..++...+...++.+. +.||||+++|
T Consensus 276 ~~~psii~IdEld~-l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atn-------------------------- 328 (693)
T KOG0730|consen 276 FQVPSIIFIDELDA-LCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATN-------------------------- 328 (693)
T ss_pred cCCCeeEeHHhHhh-hCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecC--------------------------
Confidence 45 99999999999 663 3456666666777776 7999999999
Q ss_pred hcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH-HHHHHHhhhhhhhhcccchhHHHHH-hhhCCCC
Q 001227 640 LDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS-DWKQQLERDVETLKGQSNIISIRSV-LSRNGLD 717 (1119)
Q Consensus 640 ~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR-Rfe~q~e~~Lpd~~gR~~Il~IhT~-l~~~~l~ 717 (1119)
+|+.+|+ +++| ||++++++..|+..+|.+|+++||. |... +
T Consensus 329 ----rp~sld~-------------------------------alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~--~ 371 (693)
T KOG0730|consen 329 ----RPDSLDP-------------------------------ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL--S 371 (693)
T ss_pred ----CccccCh-------------------------------hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc--c
Confidence 6777777 9998 9999999999999999999999997 4433 7
Q ss_pred cccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhhhcchhH
Q 001227 718 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENE 797 (1119)
Q Consensus 718 ~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~iv~~~e 797 (1119)
+++|+.+|..|.||.|+|+..+|++|...++++ ...+|+.++..+.|.--
T Consensus 372 ~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~--------------------~~~~~~~A~~~i~psa~---------- 421 (693)
T KOG0730|consen 372 DVDLEDIAVSTHGYVGADLAALCREASLQATRR--------------------TLEIFQEALMGIRPSAL---------- 421 (693)
T ss_pred hhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------------------hHHHHHHHHhcCCchhh----------
Confidence 899999999999999999999999999998875 45566666555544211
Q ss_pred HHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 798 FEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 798 ~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
..++ .+-++++|+||||++++|.+|++.|.+|+.+|+.|.+.|+ .||+|||||||||||||++|+|+|++++
T Consensus 422 ------Re~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~ 493 (693)
T KOG0730|consen 422 ------REIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAG 493 (693)
T ss_pred ------hhee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhc
Confidence 0111 2234789999999999999999999999999999999994 5779999999999999999999999999
Q ss_pred CcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001227 878 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 957 (1119)
Q Consensus 878 ~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~ 957 (1119)
++|+.+.+++++++|+|++|+.++.+|..|+..+|+|||+||||.+...|..... ....+++++++++|||+... .+
T Consensus 494 ~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~--k~ 570 (693)
T KOG0730|consen 494 MNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMDGLEAL--KN 570 (693)
T ss_pred CCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHccccccc--Cc
Confidence 9999999999999999999999999999999999999999999999998874333 78899999999999999754 68
Q ss_pred EEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001227 958 VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 958 VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~ 1035 (1119)
|+|||+||+|+.||++++| ||++.|+|++|+.+.|.+||+.+++++.+.+++|++.||+.|+||||+||.++|++|+.
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAAL 650 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccc
Q 001227 1036 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1090 (1119)
Q Consensus 1036 ~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e 1090 (1119)
.|+++.++ ...++.+||++|++.++++.+..
T Consensus 651 ~a~~e~i~------------------------a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 651 LALRESIE------------------------ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHHhcc------------------------cccccHHHHHHHHHhhcccCCHH
Confidence 99998543 34689999999999999998665
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-54 Score=480.97 Aligned_cols=377 Identities=60% Similarity=0.932 Sum_probs=340.7
Q ss_pred ccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhh-hcchhHHHHhhhcC
Q 001227 727 KDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKD-VVTENEFEKKLLAD 805 (1119)
Q Consensus 727 ~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~-iv~~~e~~k~ll~~ 805 (1119)
.+..+...-++.++.+|.+|++.++....... ..++..+++.++..+|+....+ .++++ ++..++++..+...
T Consensus 7 ~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~s~ 80 (386)
T KOG0737|consen 7 KDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIASD 80 (386)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhhhc
Confidence 34445567788999999999998765443333 6677888888888777665433 34554 78899999999999
Q ss_pred CCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001227 806 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM 885 (1119)
Q Consensus 806 vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~ 885 (1119)
+++|.++.++|+||+|++.++++|++.+.+|+++|++|+.+++.+|++|||||||||||||++|+|+|++.|.+|+.|.+
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecC
Q 001227 886 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 965 (1119)
Q Consensus 886 s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN 965 (1119)
+.++++|+|+.++.++.+|..|.+.+|+||||||||.+++.| ...++++...+.++||..|||+.++.+.+|+|+||||
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999999 6789999999999999999999999888999999999
Q ss_pred CCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHH
Q 001227 966 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1045 (1119)
Q Consensus 966 ~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~ 1045 (1119)
+|.+||++++||++++++|++|+..+|.+||+.+++.+.+.+++|+.++|.+|+||||+||+++|..|++.++|+++..+
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred --HHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCCCcc
Q 001227 1046 --KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSR 1110 (1119)
Q Consensus 1046 --~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~~R 1110 (1119)
..+.....+.....+.....-..|+++++||.+|+.++.+++..+.+.|....+|++.||++++|
T Consensus 320 ~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 320 TGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred ccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 32333334444555555566678999999999999999999999999999999999999999986
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.3e-51 Score=510.75 Aligned_cols=538 Identities=29% Similarity=0.447 Sum_probs=421.3
Q ss_pred cccccccccccchhhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001227 317 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 395 (1119)
Q Consensus 317 ~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 395 (1119)
-+++|+++--+ +..+..|.+.....++|+++. +++ + ...+.|||.||+|| .+.+||||+|++.+++++.++.
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i-~~~~giLL~GppGt--GKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--I-EPPKGVLLYGPPGT--GKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCceEEEECCCCC--ChHHHHHHHHHHhCCeEEEEec
Confidence 46889997766 888888888888888888764 232 2 33467999999999 7999999999999998877764
Q ss_pred cCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceee
Q 001227 396 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 475 (1119)
Q Consensus 396 ~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~ 475 (1119)
..+.+. |
T Consensus 246 ~~i~~~-------------------------------------------------------------------------~ 252 (733)
T TIGR01243 246 PEIMSK-------------------------------------------------------------------------Y 252 (733)
T ss_pred HHHhcc-------------------------------------------------------------------------c
Confidence 322211 0
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhhH
Q 001227 476 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 555 (1119)
Q Consensus 476 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k 555 (1119)
+|. ..
T Consensus 253 ~g~---------------------------------------------------------------------------~~ 257 (733)
T TIGR01243 253 YGE---------------------------------------------------------------------------SE 257 (733)
T ss_pred ccH---------------------------------------------------------------------------HH
Confidence 000 01
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcC--CCCEEEEeeccCCCcccccCCCC
Q 001227 556 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPG 625 (1119)
Q Consensus 556 ~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~--------~~~~~~l~~~L~~L--~g~vvvIgs~~~~d~~k~k~~~~ 625 (1119)
-.+..+|+.+.. ..|.||||||+|.+.... .++.+.|...++.+ .+.|+|||++|
T Consensus 258 ~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn------------ 322 (733)
T TIGR01243 258 ERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATN------------ 322 (733)
T ss_pred HHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecC------------
Confidence 134556666655 789999999999955421 23344555556655 35899999999
Q ss_pred CceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccc
Q 001227 626 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 703 (1119)
Q Consensus 626 ~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~ 703 (1119)
.|+.+|+ +++| ||++++++++|+...|.+
T Consensus 323 ------------------~~~~ld~-------------------------------al~r~gRfd~~i~i~~P~~~~R~~ 353 (733)
T TIGR01243 323 ------------------RPDALDP-------------------------------ALRRPGRFDREIVIRVPDKRARKE 353 (733)
T ss_pred ------------------ChhhcCH-------------------------------HHhCchhccEEEEeCCcCHHHHHH
Confidence 4455555 8877 999999999999999999
Q ss_pred hhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCC-Cccccc---ccchhhhHHHHHhh
Q 001227 704 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLKIS---TESIMYGLNILQGI 778 (1119)
Q Consensus 704 Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~-~kl~id---~~si~~~~~df~~a 778 (1119)
|+++|+. .-.+ ++++++.++..|.||+++++..+|..|+..++.+..+....+ ....+. .....+...+|..+
T Consensus 354 Il~~~~~--~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~A 431 (733)
T TIGR01243 354 ILKVHTR--NMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEA 431 (733)
T ss_pred HHHHHhc--CCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHH
Confidence 9999865 2233 578899999999999999999999999999998764411100 000011 13345566777777
Q ss_pred hhhhhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEE
Q 001227 779 QSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLF 858 (1119)
Q Consensus 779 ~~eik~~~~slk~iv~~~e~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~ 858 (1119)
+..+.|... .+ .+ ...+.++|++|+|++.+++.|.+.+.+|+.+++.|.+.++ .+++|+|||
T Consensus 432 l~~v~ps~~--~~--------------~~-~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~ 493 (733)
T TIGR01243 432 LKMVEPSAI--RE--------------VL-VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLF 493 (733)
T ss_pred Hhhcccccc--ch--------------hh-ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEE
Confidence 665554221 00 00 0112578999999999999999999999999999998885 466899999
Q ss_pred cCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHH
Q 001227 859 GPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRK 938 (1119)
Q Consensus 859 GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ 938 (1119)
||||||||++|+++|++++++|+.++++++.++|+|++++.++.+|..|+...|+||||||||.|++.+..........+
T Consensus 494 GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~ 573 (733)
T TIGR01243 494 GPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDR 573 (733)
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765545556778
Q ss_pred HHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHH
Q 001227 939 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 1016 (1119)
Q Consensus 939 ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~ 1016 (1119)
++++|+..++++.. ..+++||+|||+++.||++++| ||++.+++++|+.++|.+||+.+..+..+..+++++.||.
T Consensus 574 ~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~ 651 (733)
T TIGR01243 574 IVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAE 651 (733)
T ss_pred HHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 99999999999754 3679999999999999999998 9999999999999999999999999888888999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchh
Q 001227 1017 MADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNE 1096 (1119)
Q Consensus 1017 ~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~ 1096 (1119)
.|+||+|+||.++|++|+..++++.+.....+.... . .........++++||..|+++++||++.+ ....
T Consensus 652 ~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~---~-----~~~~~~~~~i~~~~f~~al~~~~ps~~~~--~~~~ 721 (733)
T TIGR01243 652 MTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV---G-----EEEFLKDLKVEMRHFLEALKKVKPSVSKE--DMLR 721 (733)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc---c-----cccccccCcccHHHHHHHHHHcCCCCCHH--HHHH
Confidence 999999999999999999999998754322111000 0 00011235799999999999999999776 4567
Q ss_pred hhHHHHHhc
Q 001227 1097 LLQWNELYG 1105 (1119)
Q Consensus 1097 ~v~W~DigG 1105 (1119)
+.+|...+|
T Consensus 722 ~~~~~~~~~ 730 (733)
T TIGR01243 722 YERLAKELK 730 (733)
T ss_pred HHHHHHHhc
Confidence 889988776
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-49 Score=461.32 Aligned_cols=440 Identities=27% Similarity=0.448 Sum_probs=334.6
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc-----ChhhHHHHHHHHh----cCC-CCEEEEeeccCCCcccccCCCCCc
Q 001227 558 INELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLE----NLP-SNVVVIGSHTQLDSRKEKSHPGGL 627 (1119)
Q Consensus 558 ~~~l~ev~~~esk~~p~Ilf~~die~~l~~-----~~~~~~~l~~~L~----~L~-g~vvvIgs~~~~d~~k~k~~~~~~ 627 (1119)
+++.|..+.. .+|.||||++.|-+... .-++...|+-.|. +.+ ++++|||+++..++
T Consensus 479 l~~~f~~a~~---~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~---------- 545 (953)
T KOG0736|consen 479 LQAIFSRARR---CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED---------- 545 (953)
T ss_pred HHHHHHHHhh---cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc----------
Confidence 3445555555 68889999988884331 1234444444444 323 48999999996554
Q ss_pred eeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHHhhhhhhhhcccchhHH
Q 001227 628 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISI 707 (1119)
Q Consensus 628 ~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~e~~Lpd~~gR~~Il~I 707 (1119)
.|- .+-.+|.. +++++.|++.-|.+||++
T Consensus 546 ----------------lp~-----------------~i~~~f~~------------------ei~~~~lse~qRl~iLq~ 574 (953)
T KOG0736|consen 546 ----------------LPA-----------------DIQSLFLH------------------EIEVPALSEEQRLEILQW 574 (953)
T ss_pred ----------------CCH-----------------HHHHhhhh------------------hccCCCCCHHHHHHHHHH
Confidence 221 22334444 445555555555555555
Q ss_pred HHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCC-----CCcccccccchhhhHHHHHhhhhh
Q 001227 708 RSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-----DAKLKISTESIMYGLNILQGIQSE 781 (1119)
Q Consensus 708 hT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-----~~kl~id~~si~~~~~df~~a~~e 781 (1119)
-+ ....+ .++.+..+|.+|.||+-.+++.++.-+...+..+-....+. ...-.+-+....+...||..+...
T Consensus 575 y~--~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~ 652 (953)
T KOG0736|consen 575 YL--NHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSR 652 (953)
T ss_pred HH--hccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHH
Confidence 32 12223 56788899999999999999999988755555442211110 011112233345555666554443
Q ss_pred hhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCC
Q 001227 782 SKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 861 (1119)
Q Consensus 782 ik~~~~slk~iv~~~e~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPp 861 (1119)
.+. +|...+.+ |.-++++|+||||++++|.+|.+.+.+|+++|++|..+ .++..||||||||
T Consensus 653 ~~~------------~fs~aiGA----PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPP 714 (953)
T KOG0736|consen 653 LQK------------EFSDAIGA----PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPP 714 (953)
T ss_pred HHH------------hhhhhcCC----CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCC
Confidence 322 33333333 33347999999999999999999999999999999875 4455799999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchh-HHHHHHH
Q 001227 862 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMK 940 (1119)
Q Consensus 862 GTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~-~~l~~ll 940 (1119)
|||||.+|+|+|.++..+|+.|.+++|.++|+|++|++++.+|+.|+..+|||||+||+|+|.++|+..++. ..+.++.
T Consensus 715 GTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVV 794 (953)
T KOG0736|consen 715 GTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVV 794 (953)
T ss_pred CCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876654 4889999
Q ss_pred HhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCC-HHHHHHHHHHHHhhcccCChhcHHHHHHH
Q 001227 941 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD-APNREKIIRVILAKEELASDVDLEGIANM 1017 (1119)
Q Consensus 941 ~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd-~eeR~eILk~ll~k~~l~~d~dl~~LA~~ 1017 (1119)
.+++.++||+.......|.||||||+|+.||++++| ||++-+++.+++ .+.+..+|+.+.+++.+++++|+.++|+.
T Consensus 795 SQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~ 874 (953)
T KOG0736|consen 795 SQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKK 874 (953)
T ss_pred HHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhh
Confidence 999999999997667899999999999999999999 999999999886 56678999999999999999999999999
Q ss_pred cC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccc
Q 001227 1018 AD-GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1090 (1119)
Q Consensus 1018 Te-Gysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e 1090 (1119)
+. .|+|+|+..||..|+..|++|.+...+.-. .+......+.-.|+|+||.+|.++++||++..
T Consensus 875 cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~---------~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~ 939 (953)
T KOG0736|consen 875 CPPNMTGADLYSLCSDAMLAAIKRTIHDIESGT---------ISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQ 939 (953)
T ss_pred CCcCCchhHHHHHHHHHHHHHHHHHHHHhhhcc---------ccccccCCceEEEEHHHHHHHHHhcCCcccHH
Confidence 97 899999999999999999999876544210 01112223445799999999999999999765
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-45 Score=407.81 Aligned_cols=284 Identities=42% Similarity=0.716 Sum_probs=256.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001227 810 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 889 (1119)
Q Consensus 810 ~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~ 889 (1119)
..+++.|+||.|+.++|+-|++.|.+|+..|+.|. |+.+|.+|||++||||||||+||+|+|.+++..|++|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 34578999999999999999999999999999997 5589999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccC--CccEEEEEecCCC
Q 001227 890 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRP 967 (1119)
Q Consensus 890 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~--~~~VlVIaTTN~p 967 (1119)
++|-|++|+.++-+|++|+.++|++|||||||.|+.+|++.++|++.+++.++|+.+|||+.... ...|+|+|+||.|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987643 2349999999999
Q ss_pred CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001227 968 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1047 (1119)
Q Consensus 968 ~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~ 1047 (1119)
|+||++++|||.+.|+|++|+.+.|..+|+..+....+.++++++.||..++||+|+||.++|++|.+.++||.+.....
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654332
Q ss_pred HHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcC
Q 001227 1048 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1106 (1119)
Q Consensus 1048 e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~ 1106 (1119)
+.....+ ..+-..|++++||+.|+.+++||++.. .+..+.+|.+-||.
T Consensus 443 ~ei~~la---------kE~~~~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQLA---------KEEPKMPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhhh---------hhccccccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 2111111 111126899999999999999999754 56788999999996
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-44 Score=425.56 Aligned_cols=452 Identities=33% Similarity=0.485 Sum_probs=364.3
Q ss_pred eeeecCCCCCCCCCCC--CCCCCCCcccccccccccCCCcchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccCh-
Q 001227 513 GVRFDRSIPEGNNLGG--FCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNN- 589 (1119)
Q Consensus 513 gv~fd~~~~~~~~l~~--~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~~- 589 (1119)
||.+..|+..|.++.+ .+.....+ ..-.-..+.+.|.......+..+|+-+.. ..|.|+|+++++.+.....
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~~ 94 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANEGAEF--LSINGPEILSKYVGESELRLRELFEEAEK---LAPSIIFIDEIDALAPKRSS 94 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhccCcc--cccCcchhhhhhhhHHHHHHHHHHHHHHH---hCCCeEeechhhhcccCccc
Confidence 4666667777777762 11111112 12111223467777778888888888888 7889999999999665322
Q ss_pred -------hhHHHHHHHHhcCC-CCEEEEeeccCCCcccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHH
Q 001227 590 -------DAYGALKSKLENLP-SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKA 661 (1119)
Q Consensus 590 -------~~~~~l~~~L~~L~-g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~ 661 (1119)
...+.+...++.+. +.|+++|+++ .|+.+++
T Consensus 95 ~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~------------------------------~~~~~~~----------- 133 (494)
T COG0464 95 DQGEVERRVVAQLLALMDGLKRGQVIVIGATN------------------------------RPDGLDP----------- 133 (494)
T ss_pred cccchhhHHHHHHHHhcccccCCceEEEeecC------------------------------CccccCh-----------
Confidence 23444444444443 4688999888 5555665
Q ss_pred HHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHH
Q 001227 662 LKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKI 739 (1119)
Q Consensus 662 ~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~L 739 (1119)
++++ ||++++++.+|+..+|.+|+.+|+.+...+. ..++..++..+.||.++++..+
T Consensus 134 --------------------a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 134 --------------------AKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP-PGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred --------------------hHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc-cccHHHHHHhcCCccHHHHHHH
Confidence 7877 9999999999999999999999998443322 7889999999999999999999
Q ss_pred HhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccc
Q 001227 740 VGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDI 819 (1119)
Q Consensus 740 v~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~iv~~~e~~k~ll~~vip~~e~~~sfddI 819 (1119)
|+.+...+.++.. ......+.+...+|..+...+.+. ..+....+.++|+++
T Consensus 193 ~~~~~~~~~~r~~---------~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~~~~v~~~di 244 (494)
T COG0464 193 AKEAALRELRRAI---------DLVGEYIGVTEDDFEEALKKVLPS-------------------RGVLFEDEDVTLDDI 244 (494)
T ss_pred HHHHHHHHHHhhh---------ccCcccccccHHHHHHHHHhcCcc-------------------cccccCCCCcceehh
Confidence 9999999998754 122344455555655544333221 011122346899999
Q ss_pred cCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHH
Q 001227 820 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKY 899 (1119)
Q Consensus 820 ~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~ 899 (1119)
+|++..++.+.+.+..|+.+++.|.+.+ .++++++|||||||||||+||+++|++++.+|+.+..+++.++|+|+++++
T Consensus 245 ggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 245 GGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred hcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHH
Confidence 9999999999999999999999998755 456689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--c
Q 001227 900 VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--R 977 (1119)
Q Consensus 900 I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--R 977 (1119)
++.+|..|++.+|+||||||+|.|++.+.... .....+++++++..|+++... .+|+||+|||+|+.+|++++| |
T Consensus 324 ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 324 IRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred HHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCc
Confidence 99999999999999999999999998886533 223368999999999998654 569999999999999999999 9
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhcc--cCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 001227 978 LPRRLMVNLPDAPNREKIIRVILAKEE--LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAE 1055 (1119)
Q Consensus 978 F~~~I~v~lPd~eeR~eILk~ll~k~~--l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~ 1055 (1119)
|+..+++++|+.++|.+||+.++.... +..+++++.++..|+||+|+||..+|++|++.+.++..
T Consensus 401 fd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~------------- 467 (494)
T COG0464 401 FDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR------------- 467 (494)
T ss_pred cceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------------
Confidence 999999999999999999999999644 35789999999999999999999999999999988742
Q ss_pred ccCCCCCCCCCccccccHHHHHHHHHHhccccc
Q 001227 1056 NRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1088 (1119)
Q Consensus 1056 ~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s 1088 (1119)
...++++||..|++++.|+..
T Consensus 468 ------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 468 ------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred ------------cCCccHHHHHHHHHhcCCCCC
Confidence 357999999999999999865
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=416.45 Aligned_cols=297 Identities=33% Similarity=0.573 Sum_probs=262.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
.++|.+|||++....+|.+++.. +.+|+.|...|+ .|++|||||||||||||+||+|||.++++||+.|+.+++.+.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 67999999999999999999998 999999999995 5789999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccC--CccEEEEEecCCCCCC
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDL 970 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~--~~~VlVIaTTN~p~~L 970 (1119)
.|++|+.++.+|+.|+...|||+||||||.+.++|.. ...+..+++..+|+..||++.... ..+|+||||||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999988876 667788899999999999987653 4789999999999999
Q ss_pred cHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH-
Q 001227 971 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK- 1047 (1119)
Q Consensus 971 d~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~- 1047 (1119)
|++++| ||++.|.+.+|+..+|.+||+.++++..+..++|+..||+.|.||.|+||..||.+|+..|++|+++....
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999875431
Q ss_pred -HHH-----------------HH-----------------HhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccc
Q 001227 1048 -ERA-----------------LA-----------------LAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST 1092 (1119)
Q Consensus 1048 -e~~-----------------~a-----------------~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~ 1092 (1119)
... +. ...+...+........-.|+++||.+|+..++||..+++.
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 000 00 0000111111111223468899999999999999999999
Q ss_pred cchhhhHHHHHhcCCCcccc
Q 001227 1093 NMNELLQWNELYGEGGSRKR 1112 (1119)
Q Consensus 1093 ~~~~~v~W~DigG~~~~RKk 1112 (1119)
..+|.|.|+||||+..+|..
T Consensus 503 ~tVPdVtW~dIGaL~~vR~e 522 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLE 522 (802)
T ss_pred eecCCCChhhcccHHHHHHH
Confidence 99999999999999998854
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-44 Score=396.34 Aligned_cols=247 Identities=41% Similarity=0.697 Sum_probs=230.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+.++|+||||+++++++|++.+++|+.+|++|.+.|+ .||+|||||||||||||+||+|+|++.++.|+.+.+++|..
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 34789999999999999999999999999999999996 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
+|+|++...++.+|..|+.++||||||||||.+.++|... +......+.+-+|+.+|||+.+. .+|-||+|||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCcc
Confidence 9999999999999999999999999999999999888653 44555667778899999999764 7899999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.||||++| ||++.|+|++|+.+.|.+||+.+.+++.+..++|++.||..++|+||+||+++|.+|.+.|+|+-
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999962
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccc
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1086 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS 1086 (1119)
...+||+||.+|++++...
T Consensus 377 ---------------------R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 377 ---------------------RDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred ---------------------cCeecHHHHHHHHHHHHhc
Confidence 2469999999999998754
No 10
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-41 Score=384.61 Aligned_cols=327 Identities=22% Similarity=0.245 Sum_probs=245.2
Q ss_pred hhhHHH--HHHHHHhhhhhhhhcccchhHHHHH-hhhCCC--CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCC
Q 001227 680 DEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEA 754 (1119)
Q Consensus 680 DeALLR--Rfe~q~e~~Lpd~~gR~~Il~IhT~-l~~~~l--~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~ 754 (1119)
|||||| |||+|+|++|||++||.+|++|||. |+++++ .++||++||.+||||+||||++||++|.|+|+.|+...
T Consensus 383 DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~ 462 (744)
T KOG0741|consen 383 DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKA 462 (744)
T ss_pred HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhcc
Confidence 349999 9999999999999999999999999 999987 89999999999999999999999999999999998765
Q ss_pred CCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHh
Q 001227 755 PGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVM 834 (1119)
Q Consensus 755 i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~iv~~~e~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~ 834 (1119)
..+........+++++...||..++.+++|+++ ..+++++.....+++.++.+. ..+.+.-.-++.
T Consensus 463 ~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG-----~see~l~~~~~~Gmi~~g~~v---------~~il~~G~llv~ 528 (744)
T KOG0741|consen 463 GGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG-----ISEEDLERFVMNGMINWGPPV---------TRILDDGKLLVQ 528 (744)
T ss_pred CcceecCchhhhheeecHHHHHHHHHhcCcccC-----CCHHHHHHHHhCCceeecccH---------HHHHhhHHHHHH
Confidence 433333456678899999999999999999999 677888999999999886541 222333222333
Q ss_pred cccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc-cccccccchHHHHHHHHHHHHhcCCe
Q 001227 835 LPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-ITSKWFGEGEKYVKAVFSLASKIAPS 913 (1119)
Q Consensus 835 ~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~-L~s~~~G~~e~~I~~lF~~A~k~~Ps 913 (1119)
+ .+.++ ..+..++||+||||+|||+||..+|...++||+.+-.++ +.+......-.+++.+|+.|++.+-+
T Consensus 529 q-vk~s~-------~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~ls 600 (744)
T KOG0741|consen 529 Q-VKNSE-------RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLS 600 (744)
T ss_pred H-hhccc-------cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcce
Confidence 2 22222 456678999999999999999999999999999987665 33322222345799999999999999
Q ss_pred EEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH-HHHhccccccccCCCCH-HH
Q 001227 914 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLPRRLMVNLPDA-PN 991 (1119)
Q Consensus 914 ILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~-aLlrRF~~~I~v~lPd~-ee 991 (1119)
||++|+|++|+ ..-+.+..+.+.+++.|++.+...+++. .+++|++||++...|.+ .+...|+..++++-.+. ++
T Consensus 601 iivvDdiErLi--D~vpIGPRfSN~vlQaL~VllK~~ppkg-~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 601 IIVVDDIERLL--DYVPIGPRFSNLVLQALLVLLKKQPPKG-RKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred EEEEcchhhhh--cccccCchhhHHHHHHHHHHhccCCCCC-ceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 99999999997 3345566778899999999999987764 68999999987665543 45568886666654433 33
Q ss_pred HHHHHHHHHhhcccCChhcHHHHHHHcCC----CcHHHHHHHHHHHHh
Q 001227 992 REKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 992 R~eILk~ll~k~~l~~d~dl~~LA~~TeG----ysg~DL~~L~~~Aa~ 1035 (1119)
-.+++.. .++..+.+...++....+ .-...|-.|+.+|.+
T Consensus 678 ~~~vl~~----~n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q 721 (744)
T KOG0741|consen 678 LLEVLEE----LNIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ 721 (744)
T ss_pred HHHHHHH----ccCCCcchhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence 3343332 233334444444433322 223555566666543
No 11
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=380.32 Aligned_cols=298 Identities=31% Similarity=0.525 Sum_probs=253.2
Q ss_pred cccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhhhcchhH
Q 001227 718 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENE 797 (1119)
Q Consensus 718 ~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~iv~~~e 797 (1119)
..+|+.++.+|.||..-|+.-+|.-|...|+. +.+....| ..+..+|..++....|..-
T Consensus 595 ~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~l---eris~~~k--------lltke~f~ksL~~F~P~aL---------- 653 (952)
T KOG0735|consen 595 MDDLDFLSVKTEGYLATDLVIFVERAIHEAFL---ERISNGPK--------LLTKELFEKSLKDFVPLAL---------- 653 (952)
T ss_pred hHHHHHHHHhcCCccchhHHHHHHHHHHHHHH---HHhccCcc--------cchHHHHHHHHHhcChHHh----------
Confidence 34677799999999999999999999999883 22222222 2344556555444333211
Q ss_pred HHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 798 FEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 798 ~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
.++-.....+..|+||+|+.++++.|++.+++|-++|.+|....+.- +.|||||||||||||+||.++|..++
T Consensus 654 ------R~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~-~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 654 ------RGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL-RTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred ------hhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCccc-ccceEEECCCCCcHHHHHHHHHhhCC
Confidence 11111112247899999999999999999999999999999887544 47999999999999999999999999
Q ss_pred CcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001227 878 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 957 (1119)
Q Consensus 878 ~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~ 957 (1119)
..|+.+.++++.++|+|.+|++++.+|..|+..+|||||+||+|++.++|+.. .-....++.++++.+|||... -..
T Consensus 727 ~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG~Eg--l~G 803 (952)
T KOG0735|consen 727 LRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDGAEG--LDG 803 (952)
T ss_pred eeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-CCCchHHHHHHHHHhhccccc--cce
Confidence 99999999999999999999999999999999999999999999999988653 233567899999999999754 367
Q ss_pred EEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001227 958 VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 958 VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~ 1035 (1119)
|.|+|+|.+|+.+|++++| |+++.++.++|+..+|.+|++.+........++|++.+|..|+||+|+||..|+..|..
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999988888899999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 001227 1036 CPIREILEKEK 1046 (1119)
Q Consensus 1036 ~airrlle~~~ 1046 (1119)
.|+++.+....
T Consensus 884 ~avh~~l~~~~ 894 (952)
T KOG0735|consen 884 AAVHEILKRED 894 (952)
T ss_pred HHHHHHHHhcC
Confidence 99999876543
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-41 Score=359.65 Aligned_cols=299 Identities=36% Similarity=0.638 Sum_probs=255.4
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 804 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 804 ~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+.-|-...+++.|+|+.|++..|+.|++.|.+|+..|++|... .+|.++|||||||||||++||+|+|.+.+..|+.|
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 3444556778999999999999999999999999999999744 67899999999999999999999999999999999
Q ss_pred ecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 001227 884 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 963 (1119)
Q Consensus 884 ~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaT 963 (1119)
+.++|+++|.|++|+.++++|++|+.++|+||||||||.|++.|. .++.+..+++..+|+++|.|+... ...++|+++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~-enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgA 275 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS-ENESEASRRIKTEFLVQMQGVGND-NDGVLVLGA 275 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC-CCchHHHHHHHHHHHHhhhccccC-CCceEEEec
Confidence 999999999999999999999999999999999999999988774 467888999999999999998764 488999999
Q ss_pred cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc-cCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHH
Q 001227 964 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1042 (1119)
Q Consensus 964 TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~-l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrll 1042 (1119)
||-|+.||.+++|||.++|++++|+...|..+|+.++.... ...+.|+.+|+.+|+||+|+||.-+++.|.+.++|++.
T Consensus 276 TNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 276 TNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred CCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 99999999999999999999999999999999999988743 34788999999999999999999999999999999986
Q ss_pred HHHHHHHHHH-----HhhccCCCCCCCC---------------CccccccHHHHHHHHHHhccccccccccchhhhHHHH
Q 001227 1043 EKEKKERALA-----LAENRASPPLYSS---------------VDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNE 1102 (1119)
Q Consensus 1043 e~~~~e~~~a-----~~~~~~~~~~~~~---------------~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~D 1102 (1119)
...+..+.-. .......|...+. .-..+|||.||..++...+|++..+ -.....++..
T Consensus 356 sAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~--Dl~k~~~Ft~ 433 (439)
T KOG0739|consen 356 SATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNED--DLLKHEKFTE 433 (439)
T ss_pred hhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHH--HHHHHHHHHH
Confidence 5544322110 0011111111111 1135899999999999999999765 4456778998
Q ss_pred HhcCCC
Q 001227 1103 LYGEGG 1108 (1119)
Q Consensus 1103 igG~~~ 1108 (1119)
-||.+|
T Consensus 434 dFGqEg 439 (439)
T KOG0739|consen 434 DFGQEG 439 (439)
T ss_pred hhccCC
Confidence 888765
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.2e-36 Score=356.43 Aligned_cols=411 Identities=22% Similarity=0.375 Sum_probs=297.3
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhccChhhHHHHHHH---HhcCCCCEEEEeeccCCCcccccCCCCCceeeccC
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSK---LENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFG 633 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~~~~~~~l~~~---L~~L~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~ 633 (1119)
.+++| +.+......+|.|+.++|.+.++ .+..+...++.. +...+..+|+++....
T Consensus 67 p~~al-~~i~~~~~~~~~~~vl~d~h~~~-~~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~------------------- 125 (489)
T CHL00195 67 PLQAL-EFIEKLTPETPALFLLKDFNRFL-NDISISRKLRNLSRILKTQPKTIIIIASELN------------------- 125 (489)
T ss_pred HHHHH-HHHHhcCCCCCcEEEEecchhhh-cchHHHHHHHHHHHHHHhCCCEEEEEcCCCC-------------------
Confidence 34444 34444333468999999999977 444443333332 2223445555554331
Q ss_pred cchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHHhhhhhhhhcccchhHHHHHhhh
Q 001227 634 SNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSR 713 (1119)
Q Consensus 634 ~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~e~~Lpd~~gR~~Il~IhT~l~~ 713 (1119)
.|..+. +++ -.+++++|+.+.+..-.+.... -..
T Consensus 126 ----------~p~el~-----------------~~~-~~~~~~lP~~~ei~~~l~~~~~------------------~~~ 159 (489)
T CHL00195 126 ----------IPKELK-----------------DLI-TVLEFPLPTESEIKKELTRLIK------------------SLN 159 (489)
T ss_pred ----------CCHHHH-----------------hce-eEEeecCcCHHHHHHHHHHHHH------------------hcC
Confidence 333333 222 3567788877766543322110 001
Q ss_pred CCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhhhc
Q 001227 714 NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVV 793 (1119)
Q Consensus 714 ~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~iv 793 (1119)
..++...++.|+..+.|++-.+++.++..+... .+ .++.+.+...+.. .+. ++
T Consensus 160 ~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~-----------~~--~~~~~~~~~i~~~-------k~q-------~~ 212 (489)
T CHL00195 160 IKIDSELLENLTRACQGLSLERIRRVLSKIIAT-----------YK--TIDENSIPLILEE-------KKQ-------II 212 (489)
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------cC--CCChhhHHHHHHH-------HHH-------HH
Confidence 134677888999999999999999988753321 11 1223322221110 000 01
Q ss_pred chhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 001227 794 TENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873 (1119)
Q Consensus 794 ~~~e~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA 873 (1119)
.. ..++.......+|++|+|++.+|+.+.+..... +......++ .+++||||+||||||||++|+++|
T Consensus 213 ~~--------~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA 280 (489)
T CHL00195 213 SQ--------TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIA 280 (489)
T ss_pred hh--------hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHH
Confidence 00 112222223578999999999999998755421 222334453 466999999999999999999999
Q ss_pred HHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCccc
Q 001227 874 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 953 (1119)
Q Consensus 874 ~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k 953 (1119)
++++.+++.++++.+.+.++|+++..++.+|..|+..+||||||||||.++..+...+......+++.+|+..++.
T Consensus 281 ~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~---- 356 (489)
T CHL00195 281 NDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE---- 356 (489)
T ss_pred HHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc----
Confidence 9999999999999999999999999999999999999999999999999987655545556677888888887764
Q ss_pred CCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccC--ChhcHHHHHHHcCCCcHHHHHHH
Q 001227 954 DKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA--SDVDLEGIANMADGYSGSDLKNL 1029 (1119)
Q Consensus 954 ~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~--~d~dl~~LA~~TeGysg~DL~~L 1029 (1119)
...+++||||||+++.||++++| ||++.+++++|+.++|.+||+.++.+.... .+.+++.||..|+||+|+||.++
T Consensus 357 ~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~l 436 (489)
T CHL00195 357 KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQS 436 (489)
T ss_pred CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHH
Confidence 23679999999999999999998 999999999999999999999999886432 57889999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHh
Q 001227 1030 CVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 1104 (1119)
Q Consensus 1030 ~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~Dig 1104 (1119)
|.+|+..|..+ .++++.+||..|++++.|+..........++.|..-+
T Consensus 437 v~eA~~~A~~~---------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 437 IIEAMYIAFYE---------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHHHHc---------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 99998776542 2569999999999999999877666677889997654
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-37 Score=349.58 Aligned_cols=249 Identities=36% Similarity=0.589 Sum_probs=228.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
..+++|+|+-|.++.|++|++.|.. |+.|+.|.+.| .+-|+||||+||||||||+||+|+|.+.++||+...++++..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 3478999999999999999999985 89999999988 566799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 970 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 970 (1119)
.++|.+.+.++.+|..|++.+||||||||||.+.++|.+...+ ..++.+++|+..|||+..+ ..|+||++||.|+.|
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~L 452 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEAL 452 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcC--CceEEEeccCChhhh
Confidence 9999999999999999999999999999999998888664444 8899999999999999754 689999999999999
Q ss_pred cHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001227 971 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1048 (1119)
Q Consensus 971 d~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e 1048 (1119)
|+++.| ||+++|.++.||..-|.+||+.++.+..+..++|+..||+-|.||+|+||.||++.|+..|..+.
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg------- 525 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG------- 525 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999998776542
Q ss_pred HHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccc
Q 001227 1049 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1090 (1119)
Q Consensus 1049 ~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e 1090 (1119)
...++|.|++-|.+++..-.-+.
T Consensus 526 -------------------a~~VtM~~LE~akDrIlMG~ERk 548 (752)
T KOG0734|consen 526 -------------------AEMVTMKHLEFAKDRILMGPERK 548 (752)
T ss_pred -------------------cccccHHHHhhhhhheeeccccc
Confidence 24699999999999987655444
No 15
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-35 Score=339.78 Aligned_cols=279 Identities=47% Similarity=0.807 Sum_probs=253.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
..+.|+|+.|++.+++.+.+++.+|+.++++|.. +..|.+++||+||||+|||+|++|||.+.++.|+.++++.|.++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3688999999999999999999999999999975 46788999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 971 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 971 (1119)
|.|+.++.++.+|..|+..+|+||||||||+++..| .+..++..+++..+|+..+++.......+|+||||||.|+.+|
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999998 6678888999999999999999988888999999999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhhc-ccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001227 972 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1050 (1119)
Q Consensus 972 ~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~-~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~ 1050 (1119)
++++|||..++++++|+.+.|..+|+.++.+. ....+.+++.|++.|+||+++||.++|..|++..++++......+
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~-- 382 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE-- 382 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh--
Confidence 99999999999999999999999999999987 344678999999999999999999999999999998864321111
Q ss_pred HHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCCC
Q 001227 1051 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1108 (1119)
Q Consensus 1051 ~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~ 1108 (1119)
.......|+++..||+.|.+.+.++++.+ ....+..|+..+|...
T Consensus 383 -----------~~~~~~~r~i~~~df~~a~~~i~~~~s~~--~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 383 -----------FIDADKIRPITYPDFKNAFKNIKPSVSLE--GLEKYEKWDKEFGSSE 427 (428)
T ss_pred -----------hcchhccCCCCcchHHHHHHhhccccCcc--ccchhHHHhhhhcccc
Confidence 12234678999999999999999999887 5577899999999754
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-35 Score=310.09 Aligned_cols=245 Identities=31% Similarity=0.576 Sum_probs=225.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+..+++||||+++++++|.+.+.+|+.+++.|.+.++ +||+|+|+|||||||||.+|+|.|...+..|..+.++.+..
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 44668999999999999999999999999999999995 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.|+|.+.+.++..|..|+...|+||||||+|.+..+|... .+.....+.+.+++.+++|+.+. .+|-|||+||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 9999999999999999999999999999999998888653 23344556677899999999765 6799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
-|||+++| |+++.|+|+.|+.+.|..|++.+.+++.+.+++++++||+-|++|+|++++.+|.+|.+.|+|+-
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~----- 396 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG----- 396 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999972
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhc
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~ 1084 (1119)
...++-+||.+++.+++
T Consensus 397 ---------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ---------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ---------------------cccccHHHHHHHHHHHH
Confidence 23589999999998876
No 17
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-34 Score=300.18 Aligned_cols=248 Identities=37% Similarity=0.628 Sum_probs=227.2
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001227 808 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 887 (1119)
Q Consensus 808 p~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~ 887 (1119)
+...+.+++.||||++-+|+++++.+++|+.+.++|.+.|+ .||+|+|+|||||||||+||+|+|+...+.|+.+.+++
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigi-dpprgvllygppg~gktml~kava~~t~a~firvvgse 224 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGI-DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCC-CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence 33456789999999999999999999999999999999995 57799999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecC
Q 001227 888 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 965 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN 965 (1119)
+..+|.|++...++.+|..|+...|+||||||||.+..+|.. .+......+++-+++.+|+|+... .++-||++||
T Consensus 225 fvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatn 302 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATN 302 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecC
Confidence 999999999999999999999999999999999999988764 244556678889999999999654 6799999999
Q ss_pred CCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHH
Q 001227 966 RPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1043 (1119)
Q Consensus 966 ~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle 1043 (1119)
+.+.|||+++| |+++.|+|++|+..+++-+|..+..++.+.+++|++.+..+-+..+++||..+|++|.+.|+|+-
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n-- 380 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN-- 380 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc--
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999962
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhc
Q 001227 1044 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1044 ~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~ 1084 (1119)
.-.+...||++|.+.+.
T Consensus 381 ------------------------ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 ------------------------RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred ------------------------ceeeeHHHHHHHHHhhc
Confidence 12477889999987654
No 18
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=297.68 Aligned_cols=245 Identities=35% Similarity=0.610 Sum_probs=224.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
..+++-+||++.+++++++.+++|.++|++|...|+..| +|+|||||||||||.||+++|+...+.|+.++.+++..+|
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 457888999999999999999999999999999998876 8999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 970 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 970 (1119)
+|++...++.+|.+|+.++|+|||+||||++...|.. .+......+.+.+++.+++|+... .++-||.+||+.+-|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccccc
Confidence 9999999999999999999999999999999876632 334455566777899999999765 679999999999999
Q ss_pred cHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001227 971 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1048 (1119)
Q Consensus 971 d~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e 1048 (1119)
|++++| |+++.|+|++|+.+.|.+|++.+.+++++....++..+|....|-+|++++.+|.+|.+.|+|+.
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999962
Q ss_pred HHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccc
Q 001227 1049 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1086 (1119)
Q Consensus 1049 ~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS 1086 (1119)
...+|.|||+-|+.++-.-
T Consensus 373 -------------------rvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred -------------------hccccHHHHHHHHHHHHhc
Confidence 1358999999999987543
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-34 Score=309.47 Aligned_cols=246 Identities=38% Similarity=0.638 Sum_probs=225.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
+..+|.||||++.++++|++.+++|+.+|++|...|+ +||+||+|||+||||||.||+|+|+...+.|+.+-.++|..+
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 3568999999999999999999999999999999995 677999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 969 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 969 (1119)
|.|++.+.++++|..|..++|+|+||||||.+..+|.. .+......+.+.+|+++++|+.. +..|-||++||+.+.
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~ 336 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIET 336 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEecccccc
Confidence 99999999999999999999999999999999988754 33444455566689999999975 478999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001227 970 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1047 (1119)
Q Consensus 970 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~ 1047 (1119)
|||+++| |+++.|.|+.||...+..||..+..++.+..+++++.+...-+.+||+||+++|.+|...|.|+.
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------ 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------ 410 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH------
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999873
Q ss_pred HHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccc
Q 001227 1048 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1086 (1119)
Q Consensus 1048 e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS 1086 (1119)
...++++||.+|.+++--+
T Consensus 411 --------------------Rm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 411 --------------------RMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred --------------------HhhccHHHHHHHHHHHHHh
Confidence 1469999999999987543
No 20
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-34 Score=332.54 Aligned_cols=263 Identities=38% Similarity=0.608 Sum_probs=246.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
..+ .+++|.......+++.+..|+..+..|...++ +|++++|+|||||||||++++++|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~-~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGI-KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCC-CCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 345 68999999999999999999999999998884 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 001227 893 FGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 971 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 971 (1119)
.|+++++++.+|+.|.+++ |+||||||+|.+++++..... ...++..+++.+++++.. ..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876444 568899999999999863 37899999999999999
Q ss_pred HHHHh-ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001227 972 EAVVR-RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1050 (1119)
Q Consensus 972 ~aLlr-RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~ 1050 (1119)
++++| ||++.+.+..|+..+|.+|++.+.++++..++.++..+|..|.||+|+||..+|..|+..++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999888899999999999999999999999999988774
Q ss_pred HHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCCCcccc
Q 001227 1051 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKR 1112 (1119)
Q Consensus 1051 ~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~~RKk 1112 (1119)
+++||..|...++||..++.....|+++|+||||++.+|++
T Consensus 405 ---------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 405 ---------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred ---------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHH
Confidence 67899999999999999999988899999999999999864
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-33 Score=336.53 Aligned_cols=248 Identities=42% Similarity=0.695 Sum_probs=226.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001227 810 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 889 (1119)
Q Consensus 810 ~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~ 889 (1119)
.+.+++|.|+.|.++++++|+|+|.. |++|+.|.+.| .+.|+|+||+||||||||.||+|+|.++++||+.+++++++
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 34578999999999999999999985 99999999999 56779999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCC---CCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001227 890 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 966 (1119)
Q Consensus 890 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~---s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~ 966 (1119)
..+.|.....++.+|..|+...|+||||||||.+...|. ..+.+......+++++..|||+... ..|+|+|+||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 999998899999999999999999999999999988874 3345556677899999999999765 77999999999
Q ss_pred CCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHH
Q 001227 967 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1043 (1119)
Q Consensus 967 p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle 1043 (1119)
++.||++++| ||++.|++++|+...|..|++.++++..+. +++++..||.+|.||+|+||.|+|++|+..|.|+
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~--- 536 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK--- 536 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh---
Confidence 9999999999 999999999999999999999999998885 8888999999999999999999999999999886
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcccc
Q 001227 1044 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1087 (1119)
Q Consensus 1044 ~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~ 1087 (1119)
....|+..||..|++++....
T Consensus 537 -----------------------~~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 537 -----------------------GLREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred -----------------------ccCccchhhHHHHHHHHhccc
Confidence 235789999999999877664
No 22
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=297.97 Aligned_cols=242 Identities=31% Similarity=0.485 Sum_probs=213.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
..+|+|++|+++.|...+-++. .|..|+.|.++. |++||+|||||||||++|+|+|++.+.|++.+...+|.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5789999999999988765444 588999998774 58999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 972 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 972 (1119)
+|.+...++.+|+.|++.+|||+||||+|.+.-.|.-+.-......+.|.|++.|||+. .+..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999987544322223345678899999999996 4578999999999999999
Q ss_pred HHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHH-HHHHHHHhhhHHHHHHHHHHHHHH
Q 001227 973 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK-NLCVTAAHCPIREILEKEKKERAL 1051 (1119)
Q Consensus 973 aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~-~L~~~Aa~~airrlle~~~~e~~~ 1051 (1119)
++++||...|+|.+|+.++|.+|++.++++.++.-+.+++.++..|.|+||+||+ .++..|.++|+.+-
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed---------- 339 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED---------- 339 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----------
Confidence 9999999999999999999999999999999999899999999999999999997 57778888887752
Q ss_pred HHhhccCCCCCCCCCccccccHHHHHHHHHHhcccc
Q 001227 1052 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1087 (1119)
Q Consensus 1052 a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~ 1087 (1119)
...++.+||+.|+++-++..
T Consensus 340 ----------------~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 340 ----------------REKVEREDIEKALKKERKRR 359 (368)
T ss_pred ----------------hhhhhHHHHHHHHHhhcccc
Confidence 23578899999999866554
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.2e-33 Score=321.59 Aligned_cols=246 Identities=38% Similarity=0.615 Sum_probs=221.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+.++|+||+|++.++++|++.+.+|+.+|+.|.+.++ .|++++||+||||||||++|+++|++++.+|+.+.++.+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45789999999999999999999999999999999885 46699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.+.|+.+..++.+|..|+...|+||||||||.++..+... +......+++.+++..++++... .+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998776432 22334567778888888887543 5799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.+|++++| ||++.|++++|+.++|.+||+.++.+..+..++++..++..|+||+|+||.++|++|++.|+++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999999888899999999999999999999999999999988752
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcc
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1085 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~p 1085 (1119)
...++++||.+|++++..
T Consensus 371 ---------------------~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 371 ---------------------RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred ---------------------CCccCHHHHHHHHHHHHh
Confidence 136999999999999754
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.4e-32 Score=314.59 Aligned_cols=250 Identities=41% Similarity=0.688 Sum_probs=222.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
+..+|++|+|++++++++.+.+..|+.+++.|...++ .++++|||+||||||||++|+++|++++.+|+.++++++...
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 4679999999999999999999999999999998885 456899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 969 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 969 (1119)
+.|+.+..++.+|..|+...|+||||||||.++..+.... ......+.+.+++..++++.. ..+++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhh
Confidence 9999999999999999999999999999999987664322 123345566677777777643 357999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001227 970 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1047 (1119)
Q Consensus 970 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~ 1047 (1119)
+|++++| ||+..|.|++|+.++|.+||+.++.+..+..+.++..+|..|+||+++||.++|++|++.|+++.
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~------ 356 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD------ 356 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 9999998 99999999999999999999999998888888999999999999999999999999999888751
Q ss_pred HHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccc
Q 001227 1048 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1090 (1119)
Q Consensus 1048 e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e 1090 (1119)
...++++||.+|+++++++...+
T Consensus 357 --------------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 --------------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------------CCCcCHHHHHHHHHHHhcccccc
Confidence 23699999999999999887655
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.2e-32 Score=290.42 Aligned_cols=249 Identities=33% Similarity=0.579 Sum_probs=227.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+.+++.|+||..++++.|++.++.|+.+|+.|.+.|+ .||+|||+|||||||||.+|+|+|+..++.|+.+-.++|..
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgi-dppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGI-DPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCC-CCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 45789999999999999999999999999999999996 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
+|+|++...++.+|++|+..+.||||+||||.+.+.|... +......+.+.+++.+++|+.+. .++-|+++||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCC
Confidence 9999999999999999999999999999999999888654 34445566777899999999654 7899999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.||++++| |+++.++|.+|+.+.|..||+.+.+.+....++-++.||..+..-+|++|+.+|.+|.+.|++..
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar----- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----- 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-----
Confidence 99999999 99999999999999999999999999988899999999999999999999999999999998852
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccc
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1088 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s 1088 (1119)
.+..|-.||.+|+.++...+.
T Consensus 403 ---------------------rk~atekdfl~av~kvvkgy~ 423 (435)
T KOG0729|consen 403 ---------------------RKVATEKDFLDAVNKVVKGYA 423 (435)
T ss_pred ---------------------hhhhhHHHHHHHHHHHHHHHH
Confidence 034677899999999876653
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=4e-31 Score=309.19 Aligned_cols=246 Identities=38% Similarity=0.622 Sum_probs=219.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
+..+|+||+|+++++++|.+.+..|+.+|++|...++. +++++||+||||||||++|+++|++++.+|+.+.++++...
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 35799999999999999999999999999999998854 66899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 969 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 969 (1119)
+.|+.+..++.+|..|....|+||||||||.++..+.. .+......+.+.+++..++++.. ..++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChHH
Confidence 99999999999999999999999999999999876643 22233345566678888888753 357999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001227 970 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1047 (1119)
Q Consensus 970 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~ 1047 (1119)
+|++++| ||++.|+|++|+.++|.+||+.++.+..+..+++++.++..++||+++||.++|++|+..|+++.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------ 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 9999998 99999999999999999999999999888889999999999999999999999999999998852
Q ss_pred HHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccc
Q 001227 1048 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1086 (1119)
Q Consensus 1048 e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS 1086 (1119)
...|+++||..|++++...
T Consensus 409 --------------------r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 409 --------------------RMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred --------------------CCccCHHHHHHHHHHHHhh
Confidence 2469999999999998543
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=5.8e-31 Score=314.96 Aligned_cols=270 Identities=39% Similarity=0.597 Sum_probs=230.9
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001227 809 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 888 (1119)
Q Consensus 809 ~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L 888 (1119)
...+.++|+|++|++++++++.+.+.. +.+++.|.+.+ ..+++++||+||||||||++|+++|.+++.+|+.++++++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 335578999999999999999998875 88899888777 4566899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001227 889 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 966 (1119)
Q Consensus 889 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~ 966 (1119)
...+.|..++.++.+|..|+...|+||||||||.++..+... ........++++|+..++++... .+++||+|||+
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~ 202 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNR 202 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCC
Confidence 988999999999999999999999999999999998766542 22344567888999999987543 56999999999
Q ss_pred CCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHH
Q 001227 967 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1044 (1119)
Q Consensus 967 p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~ 1044 (1119)
++.||++++| ||++.+++++|+.++|.+|++.++....+..+.++..+|..+.||+++||.++|++|+..+.++
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~---- 278 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK---- 278 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----
Confidence 9999999998 9999999999999999999999998877778889999999999999999999999998776553
Q ss_pred HHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCCC
Q 001227 1045 EKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1108 (1119)
Q Consensus 1045 ~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~ 1108 (1119)
....++++||..|++++..........+.+..+|...+.+.|
T Consensus 279 ----------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 279 ----------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred ----------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 124699999999999887654444444566777777665543
No 28
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-31 Score=314.42 Aligned_cols=250 Identities=40% Similarity=0.617 Sum_probs=228.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
...++|.|+.|.++.++++.+.|.. ++.|..|...|. +-|+|+||+||||||||.||+|+|.+.+.||+.++.+++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 3478999999999999999999984 889999998885 66799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.++|-+...++.+|..|++.+||||||||||.+..+|.. .+.+....+.++++++.|||+.. +..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 999999999999999999999999999999999877742 34566667899999999999973 47899999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.||++++| ||+++|.++.||...|++|++.++++..+.+++++..+|+.|.|++|+||.+++++|+..+.|+-
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n----- 374 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN----- 374 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999998862
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccc
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1090 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e 1090 (1119)
...++|.||.+|++++..-..+.
T Consensus 375 ---------------------~~~i~~~~i~ea~drv~~G~erk 397 (596)
T COG0465 375 ---------------------KKEITMRDIEEAIDRVIAGPERK 397 (596)
T ss_pred ---------------------CeeEeccchHHHHHHHhcCcCcC
Confidence 25699999999999987665443
No 29
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-32 Score=334.36 Aligned_cols=354 Identities=20% Similarity=0.219 Sum_probs=272.2
Q ss_pred ceeeeecccCCCCcceeeecCCCCCCCCCC-----CCCCCCCC---cccccccccccCCCcchhhHHHHHHHHHHHhhcc
Q 001227 498 GRVILPFEDNDFSKIGVRFDRSIPEGNNLG-----GFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNES 569 (1119)
Q Consensus 498 g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~-----~~~~~~~~---~~~~~~~~~~d~~~~~~~~k~~~~~l~ev~~~es 569 (1119)
+++...|-.++. =||.|+.|+..|.+|+ +.|..+.. ||......| .+.|.+++.+.+.-|||.+..
T Consensus 288 PE~f~~~~itpP--rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~--lskwvgEaERqlrllFeeA~k-- 361 (1080)
T KOG0732|consen 288 PEFFDNFNITPP--RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC--LSKWVGEAERQLRLLFEEAQK-- 361 (1080)
T ss_pred hhHhhhcccCCC--cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh--hccccCcHHHHHHHHHHHHhc--
Confidence 345444545654 5899999999999987 67776655 888877777 579999999999999999998
Q ss_pred CCCCeEEEEcChhhhhc-----cChhhHHHHHHHHhcC------CCCEEEEeeccCCCcccccCCCCCceeeccCcchhh
Q 001227 570 KSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTA 638 (1119)
Q Consensus 570 k~~p~Ilf~~die~~l~-----~~~~~~~~l~~~L~~L------~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~ 638 (1119)
++|.||||++|++ |+ .+.++|++|+++|.+| +|+||||||||
T Consensus 362 -~qPSIIffdeIdG-lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn------------------------- 414 (1080)
T KOG0732|consen 362 -TQPSIIFFDEIDG-LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN------------------------- 414 (1080)
T ss_pred -cCceEEecccccc-ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC-------------------------
Confidence 9999999999999 55 5799999999999999 67999999999
Q ss_pred hhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC
Q 001227 639 LLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL 716 (1119)
Q Consensus 639 ~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~Il~IhT~l~~~~l 716 (1119)
+||++|| ||+| ||+++|+|+||+..+|..|+.|||+.|.+++
T Consensus 415 -----Rpda~dp-------------------------------aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i 458 (1080)
T KOG0732|consen 415 -----RPDAIDP-------------------------------ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPI 458 (1080)
T ss_pred -----Cccccch-------------------------------hhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCC
Confidence 7888998 9999 9999999999999999999999999999999
Q ss_pred CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCC-CCcccccccchhhhHHHHHhhhhhhhhhhhhhhhhc--
Q 001227 717 DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVV-- 793 (1119)
Q Consensus 717 ~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~si~~~~~df~~a~~eik~~~~slk~iv-- 793 (1119)
.-..+..||..|.||+||||++||++|+..++++.++++|. ..++.+++..+++...+|..++..+.+....-..+.
T Consensus 459 ~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~ 538 (1080)
T KOG0732|consen 459 SRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSR 538 (1080)
T ss_pred CHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCC
Confidence 99999999999999999999999999999999999999998 788999999999999999998877665432110000
Q ss_pred chhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhh-hhcCCCCCCCceEEEEcCCCChHHHHHHHH
Q 001227 794 TENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAV 872 (1119)
Q Consensus 794 ~~~e~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pel-f~k~~l~~P~~gILL~GPpGTGKT~LArAI 872 (1119)
+.....+.+ ++-.........+.-.......+.+...+..+..+. |.-..+.+| .+||.|..|.|.+++..+|
T Consensus 539 Pl~~~~~~l----l~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg~aI 612 (1080)
T KOG0732|consen 539 PLSTYLKPL----LPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLGPAI 612 (1080)
T ss_pred CCCcceecc----cchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCcccHHH
Confidence 000000000 000000001111222222333333322221111111 111222333 5999999999999999999
Q ss_pred HHHh-CCcEEEEecCcccccc-ccchHHHHHHHHHHHHhcCCeEEEEccccccccC
Q 001227 873 ATEA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 926 (1119)
Q Consensus 873 A~el-g~~fi~V~~s~L~s~~-~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 926 (1119)
.+.+ +.++.....+.+.... ....+..+..+|.+|++..||||||.++|.|...
T Consensus 613 lh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~ 668 (1080)
T KOG0732|consen 613 LHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARV 668 (1080)
T ss_pred HHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhc
Confidence 9888 7888888887777765 6777889999999999999999999999999643
No 30
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=4e-30 Score=320.83 Aligned_cols=287 Identities=37% Similarity=0.627 Sum_probs=246.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
.++|+||+|++.+++.+.+.+..|+.+|++|...++ .+++++||+||||||||++|+++|++++.+++.++++++.+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 679999999999999999999999999999998885 4668999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 972 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 972 (1119)
.|..+..++.+|..|....|+||||||||.+++.+.... .....++.++|+..++++.. ...++||++||+++.+|+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCH
Confidence 999999999999999999999999999999987765432 23345677888888888753 367999999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001227 973 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1050 (1119)
Q Consensus 973 aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~ 1050 (1119)
++++ ||+..+.+++|+.++|.+||+.+.....+..+.+++.++..++||+++||..+|+.|+..++++.+.......
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~- 408 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF- 408 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc-
Confidence 9998 9999999999999999999999988887778889999999999999999999999999999988754221100
Q ss_pred HHHhhccCCCCC-CCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCCCccc
Q 001227 1051 LALAENRASPPL-YSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1111 (1119)
Q Consensus 1051 ~a~~~~~~~~~~-~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~~RK 1111 (1119)
..... ........++++||..|++.+.|+...+.....|.+.|+|++|++.+|+
T Consensus 409 -------~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~ 463 (733)
T TIGR01243 409 -------EAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQ 463 (733)
T ss_pred -------ccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHH
Confidence 00000 0111234689999999999999999888777789999999999988875
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=3.8e-29 Score=288.49 Aligned_cols=244 Identities=44% Similarity=0.720 Sum_probs=214.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+..+|++|+|+++++++|.+.+..|+.+++.|...++ .+++++||+||||||||++|+++|++++.+|+.+.++.+..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 34678999999999999999999999999999998885 45689999999999999999999999999999999999888
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.+.|+....++.+|..|+...|+||||||+|.++..+.... ......+.+.+++..++++.. ..++.||+|||.++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 89999999999999999999999999999999986654321 122334556677777777543 25799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.+++++++ ||++.+.++.|+.++|.+||+.++.+..+..+.++..++..++||+|+||.++|++|++.|+++.
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~----- 347 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE----- 347 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 99999999999999999999999988887778899999999999999999999999999988751
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHh
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1083 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv 1083 (1119)
...|+.+||.+|++++
T Consensus 348 ---------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ---------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---------------------CCccCHHHHHHHHHHh
Confidence 2469999999999886
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=1.4e-28 Score=291.54 Aligned_cols=273 Identities=29% Similarity=0.486 Sum_probs=211.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F 880 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~----------f 880 (1119)
.+.++|+||+|++..++++++.+..|+.+++.|...++ .|++|+|||||||||||++|+++|++++.+ |
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 34689999999999999999999999999999998885 466899999999999999999999998544 6
Q ss_pred EEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCc
Q 001227 881 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 956 (1119)
Q Consensus 881 i~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~ 956 (1119)
+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||+|.++..+...........++++|+..++++... .
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--D 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--C
Confidence 677778889999999999999999998864 6999999999999987765444455577889999999998643 5
Q ss_pred cEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhc-ccC---------ChhcHHHHHHH-------
Q 001227 957 RVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE-ELA---------SDVDLEGIANM------- 1017 (1119)
Q Consensus 957 ~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~-~l~---------~d~dl~~LA~~------- 1017 (1119)
+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... .+. ...++..++..
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999 999999999999999999999998652 221 11112222211
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHH
Q 001227 1018 ----------------------ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDD 1075 (1119)
Q Consensus 1018 ----------------------TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eD 1075 (1119)
++.+||++|.++|..|...|+++.++ ...+.++++|
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~----------------------~~~~~~~~~~ 470 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT----------------------GGQVGLRIEH 470 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh----------------------cCCcCcCHHH
Confidence 33456666666666666666655431 0124799999
Q ss_pred HHHHHHHhccccccccccchhhhHHHHHhcCCCc
Q 001227 1076 FKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 1109 (1119)
Q Consensus 1076 F~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~~ 1109 (1119)
+..|+..--.-. .+..+...-..|..|.|..|-
T Consensus 471 l~~a~~~e~~~~-~~~~~~~~~~~w~~~~~~~~~ 503 (512)
T TIGR03689 471 LLAAVLDEFRES-EDLPNTTNPDDWARISGKKGE 503 (512)
T ss_pred HHHHHHHhhccc-ccCCCCCCHHHHhhhhCCCCC
Confidence 999988643221 222233334679999887653
No 33
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.3e-28 Score=299.90 Aligned_cols=244 Identities=39% Similarity=0.599 Sum_probs=213.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
...+|+|++|++++++++.+.+.. +..++.|...+. .+++++||+||||||||++|+++|.+++.||+.++++++...
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 367999999999999999998765 788888887774 556899999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 969 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 969 (1119)
+.|.....++.+|..|+...|+||||||||.+...+.. .+.+.....+++.++..++++.. +.+++||+|||+++.
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVDI 333 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchHh
Confidence 88888889999999999999999999999999866543 22344556778889989988754 367999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001227 970 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1047 (1119)
Q Consensus 970 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~ 1047 (1119)
+|++++| ||++.+.+++|+.++|.+||+.++....+..+.++..+|..|.||+++||.++|++|+..+.++
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~------- 406 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR------- 406 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 9999999999999999999999999877788899999999999999999999999998877654
Q ss_pred HHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcc
Q 001227 1048 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1085 (1119)
Q Consensus 1048 e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~p 1085 (1119)
....++++||..|++++..
T Consensus 407 -------------------~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 407 -------------------KKATITMKEIDTAIDRVIA 425 (638)
T ss_pred -------------------CCCCcCHHHHHHHHHHHHh
Confidence 1246899999999988743
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-28 Score=301.81 Aligned_cols=347 Identities=29% Similarity=0.400 Sum_probs=263.8
Q ss_pred hhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCC-CCcccccccchhhhHHHHH
Q 001227 698 LKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQ 776 (1119)
Q Consensus 698 ~~gR~~Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl~id~~si~~~~~df~ 776 (1119)
...+..+.++|++-|. ..+...+..+.++.+..+...+..+......+.+..++. ..++..+.........+++
T Consensus 176 ~~~s~~~~~~~p~~~~-----~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~ 250 (1080)
T KOG0732|consen 176 INDSDSRDHVPPGGRQ-----LTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKE 250 (1080)
T ss_pred cccccchhccCCCCch-----hhhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcCccccchhhcccc
Confidence 4456667777765443 455667777777887777777777666665555554443 2333222222222111111
Q ss_pred hhhhhhhhhhhhhhhhcchhHHHHhhhcCC-CCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceE
Q 001227 777 GIQSESKSLKKSLKDVVTENEFEKKLLADV-IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGI 855 (1119)
Q Consensus 777 ~a~~eik~~~~slk~iv~~~e~~k~ll~~v-ip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gI 855 (1119)
++. .+..+..+.|+++||++.++.+|++.|..|+.+|+.|...++. ||+|+
T Consensus 251 ---------------------------~d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgv 302 (1080)
T KOG0732|consen 251 ---------------------------ADSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGV 302 (1080)
T ss_pred ---------------------------cccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcce
Confidence 011 1112346789999999999999999999999999999998864 66999
Q ss_pred EEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC
Q 001227 856 LLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 930 (1119)
Q Consensus 856 LL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~ 930 (1119)
|++||||||||..|+|+|..+ ...|+.-..++..++|+|+.+..++.+|+.|++.+|+|||+||||-|.+.|...
T Consensus 303 L~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk 382 (1080)
T KOG0732|consen 303 LFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK 382 (1080)
T ss_pred eecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch
Confidence 999999999999999999887 456777778899999999999999999999999999999999999998887654
Q ss_pred chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcc-cCC
Q 001227 931 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE-LAS 1007 (1119)
Q Consensus 931 ~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~-l~~ 1007 (1119)
.+ .....+..+++..|+|+... +.|+||+|||+++.++++++| ||++.++|++|+.+.|.+|+..+..+.. ...
T Consensus 383 qE-qih~SIvSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 383 QE-QIHASIVSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred HH-HhhhhHHHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 33 34567889999999999764 789999999999999999999 9999999999999999999999877643 234
Q ss_pred hhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcccc
Q 001227 1008 DVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1087 (1119)
Q Consensus 1008 d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~ 1087 (1119)
...+..||..|.||.|+||+.||.+|+..++++-.-..-. .. ....-......+..+||..|+.++.|+.
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~-------s~---~kl~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS-------SS---DKLLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec-------cc---ccccccchhhhhhhHhhhhhhhccCCCC
Confidence 5568899999999999999999999999998873211000 00 0000112233488999999999998887
Q ss_pred ccc
Q 001227 1088 SSE 1090 (1119)
Q Consensus 1088 s~e 1090 (1119)
.+.
T Consensus 530 ~R~ 532 (1080)
T KOG0732|consen 530 RRS 532 (1080)
T ss_pred Ccc
Confidence 664
No 35
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.2e-29 Score=269.12 Aligned_cols=243 Identities=35% Similarity=0.667 Sum_probs=216.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
..+|++++|.-.+..++++.+..|+.+|++|.+.++ +||.+++||||||||||.+|+++|..+|++|+.+..+.+.+++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 579999999999999999999999999999999885 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 970 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 970 (1119)
.|++...+++.|..|+.+.|||||+||||...+.+.+.+ ......+.+-+++..|+++.. ..+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 999999999999999999999999999999988875432 233445555667778888754 3789999999999999
Q ss_pred cHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001227 971 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1048 (1119)
Q Consensus 971 d~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e 1048 (1119)
+++++| |.++.+.+++|+...|..|++.+.+.....-+.+.+++.+..+|++|.|+++.|++|-+.++++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~------- 357 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE------- 357 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh-------
Confidence 999999 99999999999999999999999888888888999999999999999999999999998887752
Q ss_pred HHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhc
Q 001227 1049 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1049 ~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~ 1084 (1119)
.-.+.+|||..++.++.
T Consensus 358 -------------------~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 358 -------------------RDEVLHEDFMKLVRKQA 374 (388)
T ss_pred -------------------hHHHhHHHHHHHHHHHH
Confidence 12367889999888764
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=9.5e-28 Score=294.66 Aligned_cols=249 Identities=39% Similarity=0.604 Sum_probs=216.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
....+|+++.|.+..++.+.+.+.. +..++.|...+. ..++|+||+||||||||++|+++|.+++.+|+.++++++..
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 3457899999999999999998876 556666665553 44578999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.+.+.....++.+|..|+...|+||||||||.+...+.. .+.+.....+++.++..++++.. +..++||+|||+++
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p~ 301 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 301 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCChh
Confidence 888999999999999999999999999999999877653 23344556788999999998854 36799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.||++++| ||++.+.+++|+.++|.+||+.++.+..+..+.++..+|..|.||+++||.++|++|+..|+++
T Consensus 302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~------ 375 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 375 (644)
T ss_pred hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999988888999999999999999999999999999888764
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcccccc
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1089 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~ 1089 (1119)
....++++||.+|++++.+....
T Consensus 376 --------------------~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 376 --------------------NKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred --------------------CCCcccHHHHHHHHHHHhccccc
Confidence 12468999999999988765443
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=7.2e-27 Score=296.96 Aligned_cols=189 Identities=20% Similarity=0.284 Sum_probs=155.9
Q ss_pred hcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc-------------------------------
Q 001227 844 CKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW------------------------------- 892 (1119)
Q Consensus 844 ~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~------------------------------- 892 (1119)
.+.| ..|++||||+||||||||+||+|+|.++++||+.|+++++...+
T Consensus 1623 lrLG-l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1623 LRLA-LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHcC-CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 3444 36789999999999999999999999999999999999887543
Q ss_pred ----------ccchHH--HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcc-cCCccEE
Q 001227 893 ----------FGEGEK--YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVL 959 (1119)
Q Consensus 893 ----------~G~~e~--~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~-k~~~~Vl 959 (1119)
.+..+. .++.+|+.|++.+||||||||||.+..... ....+++++..|++... ....+|+
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VI 1774 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNIL 1774 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEE
Confidence 111222 388899999999999999999999964421 11236778888887642 2346799
Q ss_pred EEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHh--hcccCC-hhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 001227 960 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA--KEELAS-DVDLEGIANMADGYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 960 VIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~--k~~l~~-d~dl~~LA~~TeGysg~DL~~L~~~Aa 1034 (1119)
||||||+|+.||+|++| ||++.|.++.|+..+|.+++..++. +..+.. .++++.+|..|.||+|+||.+||++|+
T Consensus 1775 VIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1775 VIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEAL 1854 (2281)
T ss_pred EEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999886543 334443 367999999999999999999999999
Q ss_pred hhhHHH
Q 001227 1035 HCPIRE 1040 (1119)
Q Consensus 1035 ~~airr 1040 (1119)
..|+++
T Consensus 1855 liAirq 1860 (2281)
T CHL00206 1855 SISITQ 1860 (2281)
T ss_pred HHHHHc
Confidence 999987
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-26 Score=262.45 Aligned_cols=263 Identities=27% Similarity=0.439 Sum_probs=215.5
Q ss_pred CCCccc--ccCcHHHHHHH-HHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecCcc
Q 001227 813 GVTFDD--IGALENVKDTL-KELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSI 888 (1119)
Q Consensus 813 ~~sfdd--I~G~e~ik~~L-~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-~fi~V~~s~L 888 (1119)
.-.|++ |||++.--..+ ++....-.--|+...+.|+ +..+|+|||||||||||.+||.|.+-+++ +--.||++++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi-~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI-KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCc-cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 346666 88988665554 4455545566888888884 45689999999999999999999998864 4556899999
Q ss_pred ccccccchHHHHHHHHHHHHhc--------CCeEEEEccccccccCCCCCch-hHHHHHHHHhhhhhccCCcccCCccEE
Q 001227 889 TSKWFGEGEKYVKAVFSLASKI--------APSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVL 959 (1119)
Q Consensus 889 ~s~~~G~~e~~I~~lF~~A~k~--------~PsILfIDEID~L~~~r~s~~~-~~~l~~ll~~Ll~~ldgl~~k~~~~Vl 959 (1119)
.++|+|++|.+++.+|..|... .--||++||||.++.+|++..+ ......+.++|+..|||...- .+++
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEE
Confidence 9999999999999999999642 2359999999999998877544 456678999999999998654 6799
Q ss_pred EEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhc----ccCChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 001227 960 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTA 1033 (1119)
Q Consensus 960 VIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~----~l~~d~dl~~LA~~TeGysg~DL~~L~~~A 1033 (1119)
||+-||+.+.+|++++| ||...+++.+||...|.+|++.+.+++ .+..++|+++||..|..|+|++|..|++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999999988764 356899999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcccccc
Q 001227 1034 AHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1089 (1119)
Q Consensus 1034 a~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~ 1089 (1119)
...|..|.+...-.. .......+...++++||.+|++.++|.+-.
T Consensus 452 ~S~A~nR~vk~~~~~-----------~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~ 496 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKV-----------EVDPVAIENLKVTRGDFLNALEDVKPAFGI 496 (744)
T ss_pred HHHHHHhhhccCcce-----------ecCchhhhheeecHHHHHHHHHhcCcccCC
Confidence 999988865433110 011122344579999999999999999843
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=3.1e-24 Score=241.72 Aligned_cols=220 Identities=18% Similarity=0.251 Sum_probs=165.3
Q ss_pred CCcccc-cCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 814 VTFDDI-GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 814 ~sfddI-~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
.+|+++ +|+--...-+.+.+...-+. .....+ .++|.+++||||||||||++|++||+++|++++.+++++|.++|
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~-ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKN--FLALPN-IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhh--hhhccC-CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 466666 55544444444433221111 111123 46789999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhc-----CCeEEEEccccccccCCCCCchhHHHHHH-HHhhhhhccCCc----------ccCCc
Q 001227 893 FGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDKE 956 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~s~~~~~~l~~l-l~~Ll~~ldgl~----------~k~~~ 956 (1119)
.|++|+.++.+|..|... +||||||||||.+++.+... ......++ ..+|+..+|+.. .....
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 999999999999999754 69999999999999888642 23333344 478888887631 12356
Q ss_pred cEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCC----CcHHHHHHHH
Q 001227 957 RVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKNLC 1030 (1119)
Q Consensus 957 ~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeG----ysg~DL~~L~ 1030 (1119)
+|.||+|||+|+.|+++++| ||++.+ .+|+.++|.+|++.++++..+. ..++..|+..+.| |.|+--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 79999999999999999999 999754 5899999999999999998765 6788888888876 3444334444
Q ss_pred HHHHhhhHHH
Q 001227 1031 VTAAHCPIRE 1040 (1119)
Q Consensus 1031 ~~Aa~~airr 1040 (1119)
.++...-+.+
T Consensus 345 d~~v~~~i~~ 354 (413)
T PLN00020 345 DDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 40
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.4e-24 Score=237.05 Aligned_cols=231 Identities=23% Similarity=0.301 Sum_probs=182.2
Q ss_pred ccccccccccccchhhHHHHHHHhhhhhccccccccccC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 316 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 316 ~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~-~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
.-+|||+..--. |....=|.++.-..|+|++. |-+ .+.| -..+||.||||| ...+||||.||+-+|.++=+=
T Consensus 145 ~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PEl--F~~~GI~P-PKGVLLYGPPGT--GKTLLAkAVA~~T~AtFIrvv 217 (406)
T COG1222 145 KPDVTYEDIGGL--DEQIQEIREVVELPLKNPEL--FEELGIDP-PKGVLLYGPPGT--GKTLLAKAVANQTDATFIRVV 217 (406)
T ss_pred CCCCChhhccCH--HHHHHHHHHHhcccccCHHH--HHHcCCCC-CCceEeeCCCCC--cHHHHHHHHHhccCceEEEec
Confidence 456788877776 77777889999999999998 433 3333 467999999999 799999999999999987543
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce-
Q 001227 395 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV- 473 (1119)
Q Consensus 395 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv- 473 (1119)
.+ .-|
T Consensus 218 gS--------------------------------------------------------------------------ElVq 223 (406)
T COG1222 218 GS--------------------------------------------------------------------------ELVQ 223 (406)
T ss_pred cH--------------------------------------------------------------------------HHHH
Confidence 21 112
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001227 474 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 553 (1119)
Q Consensus 474 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 553 (1119)
||+|.+
T Consensus 224 KYiGEG-------------------------------------------------------------------------- 229 (406)
T COG1222 224 KYIGEG-------------------------------------------------------------------------- 229 (406)
T ss_pred HHhccc--------------------------------------------------------------------------
Confidence 677641
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcC-----CCCEEEEeeccCCCcccc
Q 001227 554 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKE 620 (1119)
Q Consensus 554 ~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~--------~~~~~~~~l~~~L~~L-----~g~vvvIgs~~~~d~~k~ 620 (1119)
-+++.+||+++.+ +.|.|||||+||..=+ +..|.-..+...|..| +|+|-||.|||
T Consensus 230 -aRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN------- 298 (406)
T COG1222 230 -ARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN------- 298 (406)
T ss_pred -hHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC-------
Confidence 1378899999999 9999999999999433 2344444444444444 45999999999
Q ss_pred cCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhh
Q 001227 621 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 698 (1119)
Q Consensus 621 k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~ 698 (1119)
+||-+|| |||| ||+|.+|||+||+
T Consensus 299 -----------------------R~D~LDP-------------------------------ALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 299 -----------------------RPDILDP-------------------------------ALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred -----------------------CccccCh-------------------------------hhcCCCcccceeecCCCCH
Confidence 6667777 9999 9999999999999
Q ss_pred hcccchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHh
Q 001227 699 KGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 777 (1119)
Q Consensus 699 ~gR~~Il~IhT~-l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~ 777 (1119)
.||.+||+|||+ |. --+++|++.||..|.|++||||+++|++|--+|+... ...+...||+.
T Consensus 325 ~gR~~Il~IHtrkM~--l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~---------------R~~Vt~~DF~~ 387 (406)
T COG1222 325 EGRAEILKIHTRKMN--LADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER---------------RDEVTMEDFLK 387 (406)
T ss_pred HHHHHHHHHHhhhcc--CccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc---------------cCeecHHHHHH
Confidence 999999999997 53 2278999999999999999999999999999999732 12456788887
Q ss_pred hhhhhh
Q 001227 778 IQSESK 783 (1119)
Q Consensus 778 a~~eik 783 (1119)
+..++.
T Consensus 388 Av~KV~ 393 (406)
T COG1222 388 AVEKVV 393 (406)
T ss_pred HHHHHH
Confidence 766554
No 41
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.3e-23 Score=230.88 Aligned_cols=257 Identities=19% Similarity=0.253 Sum_probs=201.4
Q ss_pred HHhcccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001227 307 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 386 (1119)
Q Consensus 307 l~~~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f 386 (1119)
|.+-|+. ++.+|.||..--. ++.|.+|-+|+...+..++|. ..+...++.+||-||||| ...|||||+|.+.
T Consensus 198 lerdIl~-~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F---~GirrPWkgvLm~GPPGT--GKTlLAKAvATEc 269 (491)
T KOG0738|consen 198 LERDILQ-RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFF---KGIRRPWKGVLMVGPPGT--GKTLLAKAVATEC 269 (491)
T ss_pred HHHHHhc-cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHH---hhcccccceeeeeCCCCC--cHHHHHHHHHHhh
Confidence 3333433 4667999987777 899999999999999988764 477889999999999999 7999999999999
Q ss_pred CCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccc
Q 001227 387 SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYT 466 (1119)
Q Consensus 387 ~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 466 (1119)
|..+.-+-|+.+...|..|+
T Consensus 270 ~tTFFNVSsstltSKwRGeS------------------------------------------------------------ 289 (491)
T KOG0738|consen 270 GTTFFNVSSSTLTSKWRGES------------------------------------------------------------ 289 (491)
T ss_pred cCeEEEechhhhhhhhccch------------------------------------------------------------
Confidence 98887777655544333222
Q ss_pred cccCCceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCccccccccccc
Q 001227 467 FKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLD 546 (1119)
Q Consensus 467 ~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d 546 (1119)
T Consensus 290 -------------------------------------------------------------------------------- 289 (491)
T KOG0738|consen 290 -------------------------------------------------------------------------------- 289 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--c-------ChhhHHHHHHHHhcCCC---C---EEEEee
Q 001227 547 SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--G-------NNDAYGALKSKLENLPS---N---VVVIGS 611 (1119)
Q Consensus 547 ~~~~~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~--~-------~~~~~~~l~~~L~~L~g---~---vvvIgs 611 (1119)
.-++..|||++.- ..|.+||||+||.+-. | +.++.+-|.-.++.+.+ + |.|++|
T Consensus 290 --------EKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 290 --------EKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred --------HHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 2356678888877 8999999999999433 1 23333333333444432 5 999999
Q ss_pred ccCCCcccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHH
Q 001227 612 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 691 (1119)
Q Consensus 612 ~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~ 691 (1119)
|| +|+++|+ |||||||..+
T Consensus 359 TN------------------------------~PWdiDE-------------------------------AlrRRlEKRI 377 (491)
T KOG0738|consen 359 TN------------------------------FPWDIDE-------------------------------ALRRRLEKRI 377 (491)
T ss_pred cC------------------------------CCcchHH-------------------------------HHHHHHhhhe
Confidence 99 8999997 9999999999
Q ss_pred hhhhhhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchh-
Q 001227 692 ERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIM- 769 (1119)
Q Consensus 692 e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~- 769 (1119)
|++|||.++|..+++|- |+.-.+ ++++++.||..+.||+|+||.-+|+.|.-+++.|+..-........+..+.+.
T Consensus 378 yIPLP~~~~R~~Li~~~--l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~ 455 (491)
T KOG0738|consen 378 YIPLPDAEARSALIKIL--LRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKM 455 (491)
T ss_pred eeeCCCHHHHHHHHHHh--hccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhcccc
Confidence 99999999999999996 777666 88999999999999999999999999999999987654433444445555555
Q ss_pred -hhHHHHHhhhhhhhhh
Q 001227 770 -YGLNILQGIQSESKSL 785 (1119)
Q Consensus 770 -~~~~df~~a~~eik~~ 785 (1119)
+...||+.++..+.+.
T Consensus 456 pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 456 PVTNEDFEEALRKVRPS 472 (491)
T ss_pred ccchhhHHHHHHHcCcC
Confidence 7788888888777664
No 42
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-22 Score=241.14 Aligned_cols=249 Identities=23% Similarity=0.320 Sum_probs=198.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 932 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 932 (1119)
..+||+|+||||||++++++|.++|.++++++|.++.....+..+..+..+|..|++.+|+||||-++|.+...... +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999998744433 33
Q ss_pred hHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcHH
Q 001227 933 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 1012 (1119)
Q Consensus 933 ~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~ 1012 (1119)
.......++.++. .+.. .....+++||++|+..+.+++.+++.|...|.++.|+.++|.+||+.++....+..++...
T Consensus 511 d~rl~~~i~~~ls-~e~~-~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDF-KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-cccc-cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 3333344444443 2222 2234789999999999999999999888899999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCC-CCCCCCccccccHHHHHHHHHHhcccccccc
Q 001227 1013 GIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASP-PLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1091 (1119)
Q Consensus 1013 ~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~-~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~ 1091 (1119)
.+|..|.||+.+|+..++..+-..+..++.++. ++ ...... .-.--.....++++||.+|+.+++..++...
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~-----l~--g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG-----LA--GGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc-----cc--ccchhccccccccccceecHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999998887443333332211 00 000000 0001122368999999999999999988766
Q ss_pred cc-chhhhHHHHHhcCCCccc
Q 001227 1092 TN-MNELLQWNELYGEGGSRK 1111 (1119)
Q Consensus 1092 ~~-~~~~v~W~DigG~~~~RK 1111 (1119)
.+ ..|+|.|+||||++.+|+
T Consensus 662 GAPKIPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKT 682 (953)
T ss_pred CCCCCCccchhcccCHHHHHH
Confidence 65 569999999999999875
No 43
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.4e-21 Score=226.54 Aligned_cols=260 Identities=21% Similarity=0.286 Sum_probs=205.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWF 893 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s~L~s~~~ 893 (1119)
|++-...++++..+....|. .++ .+|||+||+|+|||.||+++++++ -+++..++|+.+....+
T Consensus 409 d~i~~~s~kke~~n~~~spv-----------~~~-~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSPV-----------FRH-GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred ceeecchhhhhhhhhhcccc-----------ccc-ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45556666666655333321 222 479999999999999999999987 46778899999998888
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC-chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 001227 894 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 972 (1119)
Q Consensus 894 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~-~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 972 (1119)
....+.+..+|..|.+++|+||++|++|.|++...+. +........+..++..+.....+.+..+.+||+.+....+++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 8888899999999999999999999999999743332 222333444555554444444455677899999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001227 973 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1049 (1119)
Q Consensus 973 aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~ 1049 (1119)
.+.+ +|+.++.++.|+..+|.+||+.++++.... ...|++-++..|+||...||..++.+|.+.+..+.+..
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~----- 631 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN----- 631 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-----
Confidence 9888 799999999999999999999999885522 34456669999999999999999999999888543211
Q ss_pred HHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhh-hHHHHHhcCCCccc
Q 001227 1050 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL-LQWNELYGEGGSRK 1111 (1119)
Q Consensus 1050 ~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~-v~W~DigG~~~~RK 1111 (1119)
....+|.+||.++++.+.|...++...-.+- ..|.||||....|+
T Consensus 632 -----------------~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 632 -----------------GPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred -----------------CcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH
Confidence 1126999999999999999999888776654 89999999988775
No 44
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.85 E-value=3.4e-19 Score=222.70 Aligned_cols=380 Identities=19% Similarity=0.236 Sum_probs=213.1
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceee
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFT 630 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~------~~~~~~~~l~~~L~~L~g~vvvIgs~~~~d~~k~k~~~~~~~~~ 630 (1119)
.+..+++.+.. ..|.||||||++.++. ++.+..+.|+..|+ +|.+.|||+||..++
T Consensus 262 ~l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~------------- 323 (731)
T TIGR02639 262 RLKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEY------------- 323 (731)
T ss_pred HHHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHH-------------
Confidence 44555555544 5799999999999764 23567888998887 799999999994222
Q ss_pred ccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHHhhhhhhhhcccchhHHHHH
Q 001227 631 KFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSV 710 (1119)
Q Consensus 631 ~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~e~~Lpd~~gR~~Il~IhT~ 710 (1119)
+...+.+.++.++| .+|+|.+|+.+.++..+...... .. ..|
T Consensus 324 -------------------------~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~-~e---------~~~-- 365 (731)
T TIGR02639 324 -------------------------KNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEK-YE---------EFH-- 365 (731)
T ss_pred -------------------------HHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHH-HH---------hcc--
Confidence 01122345677777 47788888777765544432111 00 000
Q ss_pred hhhCCCCcccchhhhcccCCCC------HHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhh
Q 001227 711 LSRNGLDCVDLESLCIKDQTLT------TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 784 (1119)
Q Consensus 711 l~~~~l~~~~L~~LA~~tkg~s------gadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~eik~ 784 (1119)
.-.+.+..+..++..+..|- +..|. |+.+|.+..-.+... ..+ ..+...++.........
T Consensus 366 --~v~i~~~al~~~~~ls~ryi~~r~~P~kai~-lld~a~a~~~~~~~~----~~~-------~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 366 --HVKYSDEALEAAVELSARYINDRFLPDKAID-VIDEAGASFRLRPKA----KKK-------ANVSVKDIENVVAKMAH 431 (731)
T ss_pred --CcccCHHHHHHHHHhhhcccccccCCHHHHH-HHHHhhhhhhcCccc----ccc-------cccCHHHHHHHHHHHhC
Confidence 01223444444444444332 22222 233333221111000 011 12333333333222221
Q ss_pred hh--hhh-hhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEE
Q 001227 785 LK--KSL-KDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLF 858 (1119)
Q Consensus 785 ~~--~sl-k~iv~~~e~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l---~~P~~gILL~ 858 (1119)
.. .-. .+..........+ -..++|++++++.+.+.+... +.++ .+|...+||+
T Consensus 432 iP~~~~~~~~~~~l~~l~~~l-------------~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~ 490 (731)
T TIGR02639 432 IPVKTVSVDDREKLKNLEKNL-------------KAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFT 490 (731)
T ss_pred CChhhhhhHHHHHHHHHHHHH-------------hcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEE
Confidence 11 000 0000001111111 125789999999998877631 2222 2344458999
Q ss_pred cCCCChHHHHHHHHHHHhCCcEEEEecCccccc-----cccchHH-----HHHHHHHHHHhcCCeEEEEccccccccCCC
Q 001227 859 GPPGTGKTMLAKAVATEAGANFINISMSSITSK-----WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRRE 928 (1119)
Q Consensus 859 GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~-----~~G~~e~-----~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 928 (1119)
||+|||||++|+++|+.++.+++.++++++... .+|.... ....+....+..+.+||||||||.+-
T Consensus 491 Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~---- 566 (731)
T TIGR02639 491 GPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH---- 566 (731)
T ss_pred CCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC----
Confidence 999999999999999999999999999875432 1221111 11223444455667999999999772
Q ss_pred CCchhHHHHHHHHhhhhhccCCc-------ccCCccEEEEEecCCCC-------------------------CCcHHHHh
Q 001227 929 NPGEHEAMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNRPF-------------------------DLDEAVVR 976 (1119)
Q Consensus 929 s~~~~~~l~~ll~~Ll~~ldgl~-------~k~~~~VlVIaTTN~p~-------------------------~Ld~aLlr 976 (1119)
+. +.+.|+..++... .-+-.++++|+|||... .+.|+|+.
T Consensus 567 -~~-------~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~ 638 (731)
T TIGR02639 567 -PD-------IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN 638 (731)
T ss_pred -HH-------HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh
Confidence 22 3333444443211 11124678999987531 25678888
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhhcc---------cC-ChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhHH
Q 001227 977 RLPRRLMVNLPDAPNREKIIRVILAKEE---------LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIR 1039 (1119)
Q Consensus 977 RF~~~I~v~lPd~eeR~eILk~ll~k~~---------l~-~d~dl~~LA~~T--eGysg~DL~~L~~~Aa~~air 1039 (1119)
|++.++.|.+.+.++..+|++..+.+.. +. ++..++.|+... ..|..+.|+.+++.-...++.
T Consensus 639 Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~ 713 (731)
T TIGR02639 639 RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLS 713 (731)
T ss_pred cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHH
Confidence 9999999999999999999998886411 11 333455566542 345556666666555444433
No 45
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.84 E-value=6.8e-19 Score=218.57 Aligned_cols=165 Identities=18% Similarity=0.279 Sum_probs=115.7
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc----
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS---- 890 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l---~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s---- 890 (1119)
.++|++++++.|.+.+.... .++ .+|...+||+||||||||++|+++|..++.+++.++|+++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 58999999999999886421 121 345557999999999999999999999999999999987543
Q ss_pred -ccccchHHHH----HHHH-HHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCc-------ccCCcc
Q 001227 891 -KWFGEGEKYV----KAVF-SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKER 957 (1119)
Q Consensus 891 -~~~G~~e~~I----~~lF-~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~-------~k~~~~ 957 (1119)
.++|....++ ...+ ...++.+.+||||||||.+- ..+.+.|+..++.-. .-+-.+
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------PDVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------HHHHHHHHHHHhcCeeecCCCceecCCC
Confidence 2333221111 1223 33345566999999999872 223444444444211 111257
Q ss_pred EEEEEecCCC-------------------------CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001227 958 VLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 958 VlVIaTTN~p-------------------------~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
+++|+|||.- ..+.|+|+.|++.++.|+..+.++..+|+..++.+
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 8899999831 13568899999999999999999999999887754
No 46
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.1e-20 Score=211.31 Aligned_cols=233 Identities=20% Similarity=0.313 Sum_probs=190.0
Q ss_pred HHHHHHHhcccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHH
Q 001227 302 AFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKA 381 (1119)
Q Consensus 302 ~~~~~l~~~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakA 381 (1119)
-|+.-+.-.+|.+++|.|+|++.--. |.+|+.|-+..-..|+++++.++ ..|...+..|||.||||| -..|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~-g~Ll~p~kGiLL~GPpG~--GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAK-GKLLRPPKGILLYGPPGT--GKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhcc-cccccCCccceecCCCCc--hHHHHHHH
Confidence 36667788999999999999999888 99999999999999999999764 467779999999999999 79999999
Q ss_pred HHhhcCCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccc
Q 001227 382 LAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 461 (1119)
Q Consensus 382 LA~~f~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 461 (1119)
+|+.-||.+.-|+.+.+-+.|-.|+
T Consensus 147 ~Akeaga~fInv~~s~lt~KWfgE~------------------------------------------------------- 171 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLTSKWFGEA------------------------------------------------------- 171 (386)
T ss_pred HHHHcCCCcceeeccccchhhHHHH-------------------------------------------------------
Confidence 9999999988888766655333222
Q ss_pred ccccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccc
Q 001227 462 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 541 (1119)
Q Consensus 462 ~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~ 541 (1119)
T Consensus 172 -------------------------------------------------------------------------------- 171 (386)
T KOG0737|consen 172 -------------------------------------------------------------------------------- 171 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----Chh----hHHHHHHHHhcCC----CCEEEE
Q 001227 542 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NND----AYGALKSKLENLP----SNVVVI 609 (1119)
Q Consensus 542 ~~~~d~~~~~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~----~~~----~~~~l~~~L~~L~----g~vvvI 609 (1119)
.=++.++|-++. |-+|.|||||+||.+|.. .-| +-+-|...++.|. ..|+|+
T Consensus 172 -------------eKlv~AvFslAs---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 172 -------------QKLVKAVFSLAS---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred -------------HHHHHHHHhhhh---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 113334444443 589999999999998862 122 2334556677773 269999
Q ss_pred eeccCCCcccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHH
Q 001227 610 GSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQ 689 (1119)
Q Consensus 610 gs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~ 689 (1119)
|||| +|-++|. |.+||+.+
T Consensus 236 gATN------------------------------RP~DlDe-------------------------------AiiRR~p~ 254 (386)
T KOG0737|consen 236 GATN------------------------------RPFDLDE-------------------------------AIIRRLPR 254 (386)
T ss_pred eCCC------------------------------CCccHHH-------------------------------HHHHhCcc
Confidence 9999 5656664 99999999
Q ss_pred HHhhhhhhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCC
Q 001227 690 QLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 753 (1119)
Q Consensus 690 q~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~ 753 (1119)
.|.+++|+...|..||++- +..-.+ +++|+.++|.+|+||||.||..+|+.|+...++....
T Consensus 255 rf~V~lP~~~qR~kILkvi--Lk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 255 RFHVGLPDAEQRRKILKVI--LKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred eeeeCCCchhhHHHHHHHH--hcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999999999999985 666666 8899999999999999999999999999988775443
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=7e-19 Score=197.24 Aligned_cols=237 Identities=16% Similarity=0.256 Sum_probs=170.3
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh---C----CcEEEEecCc
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA---G----ANFINISMSS 887 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P--~~gILL~GPpGTGKT~LArAIA~el---g----~~fi~V~~s~ 887 (1119)
.+++|++.+|+++.+++.+ +..++.+.+.++..+ ..++||+||||||||++|+++|+.+ | .+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3799999999999998876 334455555555433 3459999999999999999999875 2 3689999999
Q ss_pred cccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 001227 888 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 967 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p 967 (1119)
+.+.++|+.+..+..+|..|. ++||||||++.|...+.. ......+.+.|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 999999988877788888764 489999999998643321 122345556666666542 2557888887642
Q ss_pred -----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHH----c--CCCc-HHHHHHHHHHHH
Q 001227 968 -----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANM----A--DGYS-GSDLKNLCVTAA 1034 (1119)
Q Consensus 968 -----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~----T--eGys-g~DL~~L~~~Aa 1034 (1119)
..+++++.+||+..|.|+.++.+++.+|++.++.+.... ++.....+... . +.|. +++++++++.|.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 245699999999999999999999999999999875432 22223333332 1 2343 899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHH
Q 001227 1035 HCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKY 1078 (1119)
Q Consensus 1035 ~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~ 1078 (1119)
.+...|+..... ...+.+++..++.+||.+
T Consensus 252 ~~~~~r~~~~~~--------------~~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGG--------------RVLTKADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCC--------------CCCCHHHHhCCCHHHHhH
Confidence 887777654311 112334667888888864
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.79 E-value=2e-18 Score=193.39 Aligned_cols=237 Identities=16% Similarity=0.216 Sum_probs=171.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecCcc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 888 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~--P~~gILL~GPpGTGKT~LArAIA~elg-------~~fi~V~~s~L 888 (1119)
+++|++++|+++.+++.+ +..++.+.+.++.. |..++||+||||||||++|+++|+.+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998876 54556666555543 455899999999999999999988762 37999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-
Q 001227 889 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 967 (1119)
Q Consensus 889 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p- 967 (1119)
.+.++|..+..+..+|..|.. +||||||++.|...+.. ......+.+.|+..++.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 888999888888888888754 89999999998643321 122334555566666532 2567888887542
Q ss_pred -C---CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc------C-CCcHHHHHHHHHHHHh
Q 001227 968 -F---DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA------D-GYSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 968 -~---~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~T------e-Gysg~DL~~L~~~Aa~ 1035 (1119)
+ .+++++.+||+..|.|+.++.+++.+|++.++.+.... ++..+..++... + --++++++++++.|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 35799999999999999999999999999999885432 233344444431 1 2367899999999988
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHH
Q 001227 1036 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 1079 (1119)
Q Consensus 1036 ~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~A 1079 (1119)
+...|+..... ......++..++.+|+..+
T Consensus 252 ~~~~r~~~~~~--------------~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLD--------------RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcC--------------CCCCHHHHhCCCHHHHhhc
Confidence 77777643211 0112345677888888654
No 49
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.5e-19 Score=193.65 Aligned_cols=197 Identities=28% Similarity=0.390 Sum_probs=159.2
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------
Q 001227 804 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ 877 (1119)
Q Consensus 804 ~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg------ 877 (1119)
.+++|..+-.--|+.++--..+|+.|..++...+...+.-....+..-.+-||||||||||||+|++|+|+.+.
T Consensus 129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 35566666566788888888999999999887666554433333333345599999999999999999999983
Q ss_pred ---CcEEEEecCccccccccchHHHHHHHHHHHHhcC---C--eEEEEccccccccCCCC---CchhHHHHHHHHhhhhh
Q 001227 878 ---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIA---P--SVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVN 946 (1119)
Q Consensus 878 ---~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~---P--sILfIDEID~L~~~r~s---~~~~~~l~~ll~~Ll~~ 946 (1119)
...+++++..++++||+++.+.+..+|......- . -.++|||++.|...|.+ ..+....-++.+.++.+
T Consensus 209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 4578999999999999999999999998876532 2 35669999999876632 23334445788999999
Q ss_pred ccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001227 947 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 947 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
+|.+... .+|++++|+|-.+.+|.++..|-+-+.++..|+...|.+|++..+.+
T Consensus 289 lDrlK~~--~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 289 LDRLKRY--PNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HHHhccC--CCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 9998654 67999999999999999999999999999999999999999998876
No 50
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=2.4e-18 Score=190.32 Aligned_cols=216 Identities=15% Similarity=0.224 Sum_probs=155.4
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecC
Q 001227 816 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 886 (1119)
Q Consensus 816 fddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~--P~~gILL~GPpGTGKT~LArAIA~el-------g~~fi~V~~s 886 (1119)
+++++|++++|+++.+++.++..... ..+.|... ...++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~-~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEK-RKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 56899999999999998876544322 22233322 23579999999999999999999875 2478899999
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001227 887 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 966 (1119)
Q Consensus 887 ~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~ 966 (1119)
++.+.++|+.+..++.+|..|. ++||||||+|.|..... .......++.++..++.. ..++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 9999999999888999998775 48999999999853111 112234556666666543 244666666543
Q ss_pred C-----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc---------CCCcHHHHHHHHH
Q 001227 967 P-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA---------DGYSGSDLKNLCV 1031 (1119)
Q Consensus 967 p-----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~T---------eGysg~DL~~L~~ 1031 (1119)
. ..+++++.+||+..+.++.++.+++.+|++.++...... ++..+..|+... ..-+++.+++++.
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2 246789999999889999999999999999999875432 333344443321 1236788889998
Q ss_pred HHHhhhHHHHHH
Q 001227 1032 TAAHCPIREILE 1043 (1119)
Q Consensus 1032 ~Aa~~airrlle 1043 (1119)
.|..+...+++.
T Consensus 233 ~a~~~~~~r~~~ 244 (261)
T TIGR02881 233 KAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHhc
Confidence 888777666543
No 51
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.1e-18 Score=190.70 Aligned_cols=208 Identities=25% Similarity=0.443 Sum_probs=165.4
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 893 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~ 893 (1119)
..|++++-.......|+++...- .+. + ....|.++||+|||||||||++|+.||...|..+-.+.+.++.. .-
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aT-aNT----K-~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIAT-ANT----K-KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHh-ccc----c-cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 45788888888888888865431 111 1 11346688999999999999999999999999998888777543 22
Q ss_pred cchHHHHHHHHHHHHhcCCe-EEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 001227 894 GEGEKYVKAVFSLASKIAPS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 972 (1119)
Q Consensus 894 G~~e~~I~~lF~~A~k~~Ps-ILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 972 (1119)
......|..+|+.|++...+ +|||||.|.++..|......+..+..+|.|+..--. ....++++.+||+|.++|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhH
Confidence 33456899999999998765 778999999998888777788888899998865332 2367899999999999999
Q ss_pred HHHhccccccccCCCCHHHHHHHHHHHHhhcccC---------------------------ChhcHHHHHHHcCCCcHHH
Q 001227 973 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA---------------------------SDVDLEGIANMADGYSGSD 1025 (1119)
Q Consensus 973 aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~---------------------------~d~dl~~LA~~TeGysg~D 1025 (1119)
++-.||+.+++|++|..++|.+++..++.++-.. .+..+.+.|+.|+||+|++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 9999999999999999999999999988763211 1123678999999999999
Q ss_pred HHHHHHH
Q 001227 1026 LKNLCVT 1032 (1119)
Q Consensus 1026 L~~L~~~ 1032 (1119)
|..|+.-
T Consensus 581 iakLva~ 587 (630)
T KOG0742|consen 581 IAKLVAS 587 (630)
T ss_pred HHHHHHH
Confidence 9988653
No 52
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.1e-19 Score=193.48 Aligned_cols=223 Identities=20% Similarity=0.293 Sum_probs=175.7
Q ss_pred HHHHHHhcccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001227 303 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 382 (1119)
Q Consensus 303 ~~~~l~~~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakAL 382 (1119)
++..|.-.|| -|+-+|-|+.---. |..|.+|-+|+-..+|.+.+.. .=....+.|||.||||| ..-.||||.
T Consensus 115 Lr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFt---GkR~PwrgiLLyGPPGT--GKSYLAKAV 186 (439)
T KOG0739|consen 115 LRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFT---GKRKPWRGILLYGPPGT--GKSYLAKAV 186 (439)
T ss_pred HHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhhc---CCCCcceeEEEeCCCCC--cHHHHHHHH
Confidence 4445555555 36678999988888 9999999999999999887732 22345789999999999 699999999
Q ss_pred HhhcCCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 001227 383 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 462 (1119)
Q Consensus 383 A~~f~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 462 (1119)
|.+-+..+.-+.|++|-..
T Consensus 187 ATEAnSTFFSvSSSDLvSK------------------------------------------------------------- 205 (439)
T KOG0739|consen 187 ATEANSTFFSVSSSDLVSK------------------------------------------------------------- 205 (439)
T ss_pred HhhcCCceEEeehHHHHHH-------------------------------------------------------------
Confidence 9988776666655544332
Q ss_pred cccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCccccccc
Q 001227 463 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 542 (1119)
Q Consensus 463 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~ 542 (1119)
T Consensus 206 -------------------------------------------------------------------------------- 205 (439)
T KOG0739|consen 206 -------------------------------------------------------------------------------- 205 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc-----ChhhHHHHHHHHh-cC------CCCEEEEe
Q 001227 543 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLE-NL------PSNVVVIG 610 (1119)
Q Consensus 543 ~~~d~~~~~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~-----~~~~~~~l~~~L~-~L------~g~vvvIg 610 (1119)
|-....-++..|||++.+ +.|.|||||+||. +|+ -.+.-..|+..|. ++ ...|+|+|
T Consensus 206 -------WmGESEkLVknLFemARe---~kPSIIFiDEiDs-lcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 206 -------WMGESEKLVKNLFEMARE---NKPSIIFIDEIDS-LCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred -------HhccHHHHHHHHHHHHHh---cCCcEEEeehhhh-hccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 222234467789999999 9999999999995 883 2344445554443 22 34999999
Q ss_pred eccCCCcccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHH
Q 001227 611 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 690 (1119)
Q Consensus 611 s~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q 690 (1119)
||| .|+.+|. |+||||++.
T Consensus 275 ATN------------------------------iPw~LDs-------------------------------AIRRRFekR 293 (439)
T KOG0739|consen 275 ATN------------------------------IPWVLDS-------------------------------AIRRRFEKR 293 (439)
T ss_pred cCC------------------------------CchhHHH-------------------------------HHHHHhhcc
Confidence 999 7777775 999999999
Q ss_pred HhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhh
Q 001227 691 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSH 746 (1119)
Q Consensus 691 ~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~ 746 (1119)
+|||||+..+|..+++||---..+.|...|+.+|+.+|.||+|+||.-+|+.|.--
T Consensus 294 IYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalme 349 (439)
T KOG0739|consen 294 IYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALME 349 (439)
T ss_pred eeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhh
Confidence 99999999999999999955566778999999999999999999999888876543
No 53
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.77 E-value=2.5e-18 Score=167.87 Aligned_cols=130 Identities=38% Similarity=0.644 Sum_probs=113.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCchh
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEH 933 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~s~~~~ 933 (1119)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+..++.+..+|..+.... |+||||||+|.+++.. +....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998888999999999999999888 9999999999998776 33445
Q ss_pred HHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHH-hccccccccCC
Q 001227 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRLMVNL 986 (1119)
Q Consensus 934 ~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLl-rRF~~~I~v~l 986 (1119)
.....+++.++..++..... ..+++||+|||.++.++++++ +||+..+.+++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55667788888888876543 367999999999999999999 99998887763
No 54
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.6e-18 Score=199.04 Aligned_cols=221 Identities=22% Similarity=0.367 Sum_probs=172.2
Q ss_pred HHhcccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001227 307 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 386 (1119)
Q Consensus 307 l~~~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f 386 (1119)
|...|.|-+.++|+|+.---- |+.|.=|-+-+- .||.+. ||++-=--.-+.|||.||||| ...+||||.|-+-
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPGT--GKTlLARAvAGEA 361 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPGT--GKTLLARAVAGEA 361 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCCC--chhHHHHHhhccc
Confidence 457788888899999987666 999999999876 677764 466544666789999999999 7999999999999
Q ss_pred CCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccc
Q 001227 387 SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYT 466 (1119)
Q Consensus 387 ~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 466 (1119)
++++.-- .| +|+.
T Consensus 362 ~VPFF~~-----sG-----SEFd--------------------------------------------------------- 374 (752)
T KOG0734|consen 362 GVPFFYA-----SG-----SEFD--------------------------------------------------------- 374 (752)
T ss_pred CCCeEec-----cc-----cchh---------------------------------------------------------
Confidence 9886421 11 1110
Q ss_pred cccCCceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCccccccccccc
Q 001227 467 FKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLD 546 (1119)
Q Consensus 467 ~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d 546 (1119)
- .|||-
T Consensus 375 -----E-m~VGv-------------------------------------------------------------------- 380 (752)
T KOG0734|consen 375 -----E-MFVGV-------------------------------------------------------------------- 380 (752)
T ss_pred -----h-hhhcc--------------------------------------------------------------------
Confidence 0 12321
Q ss_pred CCCcchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc---Chhh------HHHHHHHHhcCC--CCEEEEeeccCC
Q 001227 547 SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG---NNDA------YGALKSKLENLP--SNVVVIGSHTQL 615 (1119)
Q Consensus 547 ~~~~~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~---~~~~------~~~l~~~L~~L~--g~vvvIgs~~~~ 615 (1119)
.-.-+..||..++. +.|+|||||++|. +++ +.+. .+.+...|+.+. .+||||||||
T Consensus 381 -------GArRVRdLF~aAk~---~APcIIFIDEiDa-vG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN-- 447 (752)
T KOG0734|consen 381 -------GARRVRDLFAAAKA---RAPCIIFIDEIDA-VGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN-- 447 (752)
T ss_pred -------cHHHHHHHHHHHHh---cCCeEEEEechhh-hcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC--
Confidence 01235678888888 8999999999999 662 2222 223333333332 3999999999
Q ss_pred CcccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhh
Q 001227 616 DSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLER 693 (1119)
Q Consensus 616 d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~ 693 (1119)
|||++|+ ||.| ||++|+-.
T Consensus 448 ----------------------------fpe~LD~-------------------------------AL~RPGRFD~~v~V 468 (752)
T KOG0734|consen 448 ----------------------------FPEALDK-------------------------------ALTRPGRFDRHVTV 468 (752)
T ss_pred ----------------------------ChhhhhH-------------------------------HhcCCCccceeEec
Confidence 8899998 9999 99999999
Q ss_pred hhhhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhh
Q 001227 694 DVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 749 (1119)
Q Consensus 694 ~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~ 749 (1119)
|+||..||.+||+.| |..-.+ .++|+.-+|.-|.||+||||+.+|+.|+.+|-.
T Consensus 469 p~PDv~GR~eIL~~y--l~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 469 PLPDVRGRTEILKLY--LSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred CCCCcccHHHHHHHH--HhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 999999999999999 565566 689999999999999999999999999999887
No 55
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.75 E-value=3.2e-16 Score=198.03 Aligned_cols=201 Identities=22% Similarity=0.266 Sum_probs=127.8
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 890 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~---~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s 890 (1119)
..++|++...+.+.+.+... +.++. +|...+||+||+|+|||++|+++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 35899999999998887642 12222 333348999999999999999999998 45789999876532
Q ss_pred c------------cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCc-------
Q 001227 891 K------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR------- 951 (1119)
Q Consensus 891 ~------------~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~------- 951 (1119)
. |+|..+. ..+....++.+.+||+|||||.. .+. +.+.|+..++.-.
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----~~~-------v~~~Llq~ld~g~l~d~~Gr 703 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----HPD-------VLELFYQVFDKGVMEDGEGR 703 (852)
T ss_pred hhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----CHH-------HHHHHHHHhhcceeecCCCc
Confidence 2 2232211 11334445667799999999865 222 2233333333211
Q ss_pred ccCCccEEEEEecCCCC-----------------------------CCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001227 952 TKDKERVLVLAATNRPF-----------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 952 ~k~~~~VlVIaTTN~p~-----------------------------~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
.-+-.+.+||+|||... .+.++|++|++ +|.|...+.++..+|+...+..
T Consensus 704 ~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 704 EIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred EEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 01125688999988411 14567788886 8889999999999999887654
Q ss_pred c--------cc---CChhcHHHHHHHcCC--CcHHHHHHHHHHHHhhhHHH
Q 001227 1003 E--------EL---ASDVDLEGIANMADG--YSGSDLKNLCVTAAHCPIRE 1040 (1119)
Q Consensus 1003 ~--------~l---~~d~dl~~LA~~TeG--ysg~DL~~L~~~Aa~~airr 1040 (1119)
. ++ .++...+.|+....+ |-.+.|+++++.-...++.+
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 1 11 133345666666542 45667777666655544443
No 56
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.5e-17 Score=194.81 Aligned_cols=248 Identities=36% Similarity=0.537 Sum_probs=216.6
Q ss_pred ccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEE
Q 001227 836 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVV 915 (1119)
Q Consensus 836 pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsIL 915 (1119)
|+..++.+...+ ..++.+++++||||+|||.++++++.. +..+..++.+...+++.+..+...+.+|..+....|+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 3 PLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 566777777776 456799999999999999999999999 766688899999999999999999999999999999999
Q ss_pred EEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHH
Q 001227 916 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNRE 993 (1119)
Q Consensus 916 fIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~ 993 (1119)
++||++.+.+.+.. ........+..+++..++++. ... +++++.||++..+++++++ ||+..+.+..|+...|.
T Consensus 81 ~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 99999999988766 555567788899999999987 345 9999999999999999999 99999999999999999
Q ss_pred HHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccH
Q 001227 994 KIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKM 1073 (1119)
Q Consensus 994 eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~ 1073 (1119)
+++...........+.+...++..+.|+.++++..+|..+...++++.+ ........+++
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------------------~~~~~~~~~~~ 216 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------------------DLVGEYIGVTE 216 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------------------ccCcccccccH
Confidence 9999988887777788999999999999999999999999988888753 01112356899
Q ss_pred HHHHHHHHHhccccccccccchhhhHHHHHhcCCCccc
Q 001227 1074 DDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1111 (1119)
Q Consensus 1074 eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~~RK 1111 (1119)
+||.++++++.++ .+.....+.+.|.|+||++..|.
T Consensus 217 ~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~ 252 (494)
T COG0464 217 DDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKE 252 (494)
T ss_pred HHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHH
Confidence 9999999999998 67777889999999999887764
No 57
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.72 E-value=2.5e-15 Score=190.29 Aligned_cols=203 Identities=20% Similarity=0.239 Sum_probs=128.4
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 890 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l---~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s 890 (1119)
+.++|++.+++.+.+.+... +.++ .+|...+||+||+|+|||++|+++|+.+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 35899999999998877631 1121 3444558999999999999999999987 46899999887532
Q ss_pred c-----cccchHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCc-------cc
Q 001227 891 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 953 (1119)
Q Consensus 891 ~-----~~G~~e~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~-------~k 953 (1119)
. .+|....+ ...+....++.+.+||+|||||.+ . ..+.+.|+..++... .-
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----~-------~~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----H-------PDIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----C-------HHHHHHHHHHhccCceecCCCcEE
Confidence 2 12211111 123445555556699999999977 2 223344444444211 11
Q ss_pred CCccEEEEEecCCCCC-------------------------------------CcHHHHhccccccccCCCCHHHHHHHH
Q 001227 954 DKERVLVLAATNRPFD-------------------------------------LDEAVVRRLPRRLMVNLPDAPNREKII 996 (1119)
Q Consensus 954 ~~~~VlVIaTTN~p~~-------------------------------------Ld~aLlrRF~~~I~v~lPd~eeR~eIL 996 (1119)
+-.+.++|+|||.... +.|+|+.|++.++.|.+.+.++..+|+
T Consensus 649 ~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 649 DFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred ecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHH
Confidence 2257899999874210 235678899999999999999999998
Q ss_pred HHHHhhcc---------cC-ChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhHH
Q 001227 997 RVILAKEE---------LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIR 1039 (1119)
Q Consensus 997 k~ll~k~~---------l~-~d~dl~~LA~~T--eGysg~DL~~L~~~Aa~~air 1039 (1119)
+..+.+.. +. ++...+.|+... ..|..+.|+.+++.-...++.
T Consensus 729 ~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 729 EIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred HHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Confidence 88776421 11 233345566542 234455565555544444433
No 58
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.72 E-value=2.7e-17 Score=195.79 Aligned_cols=240 Identities=19% Similarity=0.219 Sum_probs=175.1
Q ss_pred cccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 001227 310 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 389 (1119)
Q Consensus 310 ~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~ 389 (1119)
++++-...+++|++.--+ ++.|.-|....-.+.. ....|+ + +..+.|||.||||| .+.+||||+|++++++
T Consensus 216 ~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpGT--GKTllAkaiA~e~~~~ 286 (489)
T CHL00195 216 EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQGT--GKSLTAKAIANDWQLP 286 (489)
T ss_pred ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCCC--cHHHHHHHHHHHhCCC
Confidence 456666678889888886 8888888764322211 122343 3 34578999999999 7999999999999999
Q ss_pred EEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccccccccc
Q 001227 390 LLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKK 469 (1119)
Q Consensus 390 LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1119)
++.+|...+++++-.|+
T Consensus 287 ~~~l~~~~l~~~~vGes--------------------------------------------------------------- 303 (489)
T CHL00195 287 LLRLDVGKLFGGIVGES--------------------------------------------------------------- 303 (489)
T ss_pred EEEEEhHHhcccccChH---------------------------------------------------------------
Confidence 99999755544221111
Q ss_pred CCceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCC
Q 001227 470 GDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSL 549 (1119)
Q Consensus 470 gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 549 (1119)
T Consensus 304 -------------------------------------------------------------------------------- 303 (489)
T CHL00195 304 -------------------------------------------------------------------------------- 303 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC---------hhhHHHHHHHHhcCCCCEEEEeeccCCCcccc
Q 001227 550 GDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN---------NDAYGALKSKLENLPSNVVVIGSHTQLDSRKE 620 (1119)
Q Consensus 550 ~~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~---------~~~~~~l~~~L~~L~g~vvvIgs~~~~d~~k~ 620 (1119)
...+..+|+.+.. .+|.||||||+|+++.+. .++...|-..|+.-..+|+|||+||
T Consensus 304 -----e~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN------- 368 (489)
T CHL00195 304 -----ESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN------- 368 (489)
T ss_pred -----HHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC-------
Confidence 1134566666665 789999999999977631 2334444444454567999999999
Q ss_pred cCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhh
Q 001227 621 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 698 (1119)
Q Consensus 621 k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~ 698 (1119)
.|+.+|+ |++| ||++.+++++|+.
T Consensus 369 -----------------------~~~~Ld~-------------------------------allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 369 -----------------------NIDLLPL-------------------------------EILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred -----------------------ChhhCCH-------------------------------HHhCCCcCCeEEEeCCcCH
Confidence 4555665 8888 9999999999999
Q ss_pred hcccchhHHHHHh-hhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHh
Q 001227 699 KGQSNIISIRSVL-SRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 777 (1119)
Q Consensus 699 ~gR~~Il~IhT~l-~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~ 777 (1119)
..|.+|+++|... ......+.+++.||..|.||+|+||+.+|.+|...|+.... .+...+|..
T Consensus 395 ~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~----------------~lt~~dl~~ 458 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR----------------EFTTDDILL 458 (489)
T ss_pred HHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC----------------CcCHHHHHH
Confidence 9999999999763 32334688999999999999999999999999988875211 134667777
Q ss_pred hhhhhhhhh
Q 001227 778 IQSESKSLK 786 (1119)
Q Consensus 778 a~~eik~~~ 786 (1119)
+...++|+.
T Consensus 459 a~~~~~Pls 467 (489)
T CHL00195 459 ALKQFIPLA 467 (489)
T ss_pred HHHhcCCCc
Confidence 766666653
No 59
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.70 E-value=1.8e-15 Score=191.64 Aligned_cols=173 Identities=21% Similarity=0.348 Sum_probs=109.0
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001227 816 FDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 889 (1119)
Q Consensus 816 fddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l---~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~ 889 (1119)
+..++|++.+++.+.+.+... +.++ .+|...+||+||+|||||++|++||..+ +.+++.++|+++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 346889999999998887641 1122 2333468999999999999999999887 5679999998754
Q ss_pred cc-----cccchHHH----HHHHHHHH-HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCC-cccCCccE
Q 001227 890 SK-----WFGEGEKY----VKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERV 958 (1119)
Q Consensus 890 s~-----~~G~~e~~----I~~lF~~A-~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl-~~k~~~~V 958 (1119)
.. .+|....+ -...+..+ +..+.+|||||||+.+ ++..+..+..++..-... ++. ...+-.+.
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----~~~v~~~Ll~ile~g~l~-d~~gr~vd~rn~ 712 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----HPDVFNILLQVLDDGRLT-DGQGRTVDFRNT 712 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----CHHHHHHHHHHHhhCcee-cCCceEEeeccc
Confidence 32 12211000 01223333 3344489999999976 222222222222111000 110 00112456
Q ss_pred EEEEecCCC-------------------------CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001227 959 LVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 959 lVIaTTN~p-------------------------~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
+||+|||.. ..+.++|+.|++.++.|.+++.++..+|++.++.+
T Consensus 713 iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 713 VVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 789999862 12456888999999999999999999998888765
No 60
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.70 E-value=1.1e-14 Score=185.05 Aligned_cols=204 Identities=22% Similarity=0.326 Sum_probs=131.2
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 890 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l---~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s 890 (1119)
..++|++.+++.+.+.+... ..++ .+|...+||+||+|||||++|++||..+ +.+++.++++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 45899999999998887642 1121 2455569999999999999999999987 56899999987543
Q ss_pred cc-----ccchHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCc-------cc
Q 001227 891 KW-----FGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 953 (1119)
Q Consensus 891 ~~-----~G~~e~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~-------~k 953 (1119)
.. +|....+ ...+....++.+.+||||||||.+ ++. +.+.|+..++.-. ..
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----~~~-------v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----HPD-------VFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----CHH-------HHHHHHHHHhcCceecCCCeEE
Confidence 21 1111000 112333344555689999999977 222 2233333332111 01
Q ss_pred CCccEEEEEecCCCC-------------------------CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc-----
Q 001227 954 DKERVLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----- 1003 (1119)
Q Consensus 954 ~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~----- 1003 (1119)
+-.+.+||+|||... .+.+.|+.|++.++.|.+++.++..+|+...+...
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 125678999998621 13356777999999999999999999988877531
Q ss_pred --c--c-CChhcHHHHHHHcC--CCcHHHHHHHHHHHHhhhHHH
Q 001227 1004 --E--L-ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIRE 1040 (1119)
Q Consensus 1004 --~--l-~~d~dl~~LA~~Te--Gysg~DL~~L~~~Aa~~airr 1040 (1119)
. + .++..++.|+...- .+..+.|+++++.....++.+
T Consensus 785 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 785 ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 1 1 13334556666532 466778888877777666554
No 61
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.69 E-value=4.9e-17 Score=208.61 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhccCh---hhHHHHHHHHhcC-----CCCEEEEeeccCCCcccccCCCCC
Q 001227 555 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGNN---DAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGG 626 (1119)
Q Consensus 555 k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~~---~~~~~l~~~L~~L-----~g~vvvIgs~~~~d~~k~k~~~~~ 626 (1119)
..-+..+|+.+.. .+|+||||||||. |+.+. ...+.|...|+.. ..+||||||||
T Consensus 1718 ~~rIr~lFelARk---~SPCIIFIDEIDa-L~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATN------------- 1780 (2281)
T CHL00206 1718 RFYITLQFELAKA---MSPCIIWIPNIHD-LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTH------------- 1780 (2281)
T ss_pred HHHHHHHHHHHHH---CCCeEEEEEchhh-cCCCccceehHHHHHHHhccccccCCCCCEEEEEeCC-------------
Confidence 3458899999988 8999999999999 66432 2355666666654 23799999999
Q ss_pred ceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccch
Q 001227 627 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 704 (1119)
Q Consensus 627 ~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~I 704 (1119)
+||.+|| ||+| ||++++++++|+..+|..|
T Consensus 1781 -----------------RPD~LDP-------------------------------ALLRPGRFDR~I~Ir~Pd~p~R~ki 1812 (2281)
T CHL00206 1781 -----------------IPQKVDP-------------------------------ALIAPNKLNTCIKIRRLLIPQQRKH 1812 (2281)
T ss_pred -----------------CcccCCH-------------------------------hHcCCCCCCeEEEeCCCCchhHHHH
Confidence 7888888 9999 9999999999999999999
Q ss_pred hHHHHHhhhCCC--CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhc
Q 001227 705 ISIRSVLSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 751 (1119)
Q Consensus 705 l~IhT~l~~~~l--~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~ 751 (1119)
+.|+...+.-.+ .+++++.+|..|.||+||||+.||.+|++.|+.+.
T Consensus 1813 L~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1813 FFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 998643333333 34689999999999999999999999999999854
No 62
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.5e-15 Score=185.95 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=119.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSK 891 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l---~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~~s~L~s~ 891 (1119)
.++|++++...+.+.+.. .+.|+ .+|...+||.||+|+|||.||+++|..+. -.++.+++++++.+
T Consensus 492 rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 589999999999988874 23343 34555689999999999999999999995 78999999986544
Q ss_pred ------------cccchHHHHHHHHHHHH-hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccC----
Q 001227 892 ------------WFGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD---- 954 (1119)
Q Consensus 892 ------------~~G~~e~~I~~lF~~A~-k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~---- 954 (1119)
|+|..+ ...+.+|- +.+.+||++|||+.- ...+++.|+..+|.-.-.+
T Consensus 564 HsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred HHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCC
Confidence 333332 23444554 445699999999854 2457777777776432221
Q ss_pred ---CccEEEEEecCCC----------------------------CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001227 955 ---KERVLVLAATNRP----------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 955 ---~~~VlVIaTTN~p----------------------------~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
-.+.+||+|||-- ..+.|+|+.|++.+|.|...+.+...+|+...+.+
T Consensus 629 ~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 629 TVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred EEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 2578999999731 12346888899999999999999999999888765
No 63
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.68 E-value=4.3e-16 Score=166.74 Aligned_cols=197 Identities=22% Similarity=0.295 Sum_probs=126.6
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 893 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~ 893 (1119)
.+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++++.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 58999999999999988776642221 234568999999999999999999999999999988765422
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhh-hccCCccc------CCccEEEEEecCC
Q 001227 894 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTK------DKERVLVLAATNR 966 (1119)
Q Consensus 894 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~-~ldgl~~k------~~~~VlVIaTTN~ 966 (1119)
...+..++.... ...||||||||+| +...++.+...++.+.. .+-|..+. +-.++-+|+||++
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 122334444332 3579999999988 44555555555555443 12222211 1146899999999
Q ss_pred CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 001227 967 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1033 (1119)
Q Consensus 967 p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~A 1033 (1119)
...|...++.||.....+..++.++..+|++.-....++. ++....+||..+.| +++-..+|++.+
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 9999999999999888899999999999998776665544 44557889999887 454545555443
No 64
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.7e-16 Score=192.81 Aligned_cols=221 Identities=23% Similarity=0.326 Sum_probs=172.5
Q ss_pred ccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001227 311 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 390 (1119)
Q Consensus 311 i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~L 390 (1119)
+-+-.++.|+|+++--- |..|.-|.+-+- .||+++. |.+-=.-.-+.+||+||||| -...||||.|-+-|+++
T Consensus 300 ~~~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPGT--GKTLLAKAiAGEAgVPF 372 (774)
T KOG0731|consen 300 FKNEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPGT--GKTLLAKAIAGEAGVPF 372 (774)
T ss_pred eccCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCCC--cHHHHHHHHhcccCCce
Confidence 33467888999999988 999999999876 7999875 54433555688999999999 79999999999999998
Q ss_pred EEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccC
Q 001227 391 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 470 (1119)
Q Consensus 391 L~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 470 (1119)
+-+-.+. +. |
T Consensus 373 ~svSGSE----------Fv------E------------------------------------------------------ 382 (774)
T KOG0731|consen 373 FSVSGSE----------FV------E------------------------------------------------------ 382 (774)
T ss_pred eeechHH----------HH------H------------------------------------------------------
Confidence 7654321 11 0
Q ss_pred CceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCc
Q 001227 471 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 550 (1119)
Q Consensus 471 drv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 550 (1119)
.|+|.. +
T Consensus 383 ---~~~g~~----------------------------a------------------------------------------ 389 (774)
T KOG0731|consen 383 ---MFVGVG----------------------------A------------------------------------------ 389 (774)
T ss_pred ---Hhcccc----------------------------h------------------------------------------
Confidence 111110 0
Q ss_pred chhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc----------cC---hhhHHHHHHHHhcC--CCCEEEEeeccCC
Q 001227 551 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT----------GN---NDAYGALKSKLENL--PSNVVVIGSHTQL 615 (1119)
Q Consensus 551 ~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~----------~~---~~~~~~l~~~L~~L--~g~vvvIgs~~~~ 615 (1119)
-.++.||..+.. ..|.||||||+|. ++ +| .+..+.+--.++.+ .+.||||++||
T Consensus 390 -----srvr~lf~~ar~---~aP~iifideida-~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn-- 458 (774)
T KOG0731|consen 390 -----SRVRDLFPLARK---NAPSIIFIDEIDA-VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN-- 458 (774)
T ss_pred -----HHHHHHHHHhhc---cCCeEEEeccccc-ccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccC--
Confidence 035678888887 8999999999998 44 22 34555555556655 34899999999
Q ss_pred CcccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhh
Q 001227 616 DSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLER 693 (1119)
Q Consensus 616 d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~ 693 (1119)
+||-+|+ |||| ||+|++.+
T Consensus 459 ----------------------------r~d~ld~-------------------------------allrpGRfdr~i~i 479 (774)
T KOG0731|consen 459 ----------------------------RPDILDP-------------------------------ALLRPGRFDRQIQI 479 (774)
T ss_pred ----------------------------CccccCH-------------------------------HhcCCCccccceec
Confidence 5666676 9999 99999999
Q ss_pred hhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhc
Q 001227 694 DVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 751 (1119)
Q Consensus 694 ~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~ 751 (1119)
++||+++|.+|+++|-+-..-..+++++..||.+|.||+||||.-+|++|+..|..+.
T Consensus 480 ~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~ 537 (774)
T KOG0731|consen 480 DLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG 537 (774)
T ss_pred cCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc
Confidence 9999999999999996522222588999999999999999999999999999999753
No 65
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-15 Score=175.93 Aligned_cols=219 Identities=16% Similarity=0.298 Sum_probs=168.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 893 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~ 893 (1119)
.+|+.++-..+.|+.|.+-+...+...+.|.+.|.... +|.|||||||||||+++.|||+++++.++.++.++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK-RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK-RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh-ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 78999999999999999999999999999998875544 899999999999999999999999999999998765432
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch-----hH-HHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 001227 894 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-----HE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 967 (1119)
Q Consensus 894 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~-----~~-~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p 967 (1119)
.. ++.+...+. ..+||+|.+||.-+.-+..... +. ...-.+.-|++.+||+......--+||+|||.+
T Consensus 275 ---~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 ---SD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred ---HH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 12 666655443 3489999999987643322111 11 123457789999999988776677899999999
Q ss_pred CCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCC--CcHHHHHHH-HHH--HHhhhHHH
Q 001227 968 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG--YSGSDLKNL-CVT--AAHCPIRE 1040 (1119)
Q Consensus 968 ~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeG--ysg~DL~~L-~~~--Aa~~airr 1040 (1119)
+.||||++| |.+.+|++..-+.+.-+.+++.++.-.. +..-+.++.+..++ .+++|+... +.. .+..++++
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999986643 22334455544443 589998643 332 35556666
Q ss_pred HHH
Q 001227 1041 ILE 1043 (1119)
Q Consensus 1041 lle 1043 (1119)
+++
T Consensus 427 Lv~ 429 (457)
T KOG0743|consen 427 LVE 429 (457)
T ss_pred HHH
Confidence 654
No 66
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.66 E-value=1.6e-15 Score=189.87 Aligned_cols=185 Identities=25% Similarity=0.389 Sum_probs=141.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 883 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V 883 (1119)
..+++++|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3677899999999887776642 123589999999999999999999987 6788999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch-hHHHHHHHHhhhhhccCCcccCCccEEE
Q 001227 884 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 960 (1119)
Q Consensus 884 ~~s~L~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~-~~~l~~ll~~Ll~~ldgl~~k~~~~VlV 960 (1119)
++..+. ..+.|+.+..++.+|..+.+..+.||||||||.|++.....+. .... .++.. .+ .++.+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~-~~L~~---~l------~~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS-NLLKP---AL------SSGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH-HHHHH---HH------hCCCeEE
Confidence 988876 4678999999999999998888999999999999865432222 2222 22222 11 2367999
Q ss_pred EEecCCC-----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc----c-CChhcHHHHHHHcCCCcH
Q 001227 961 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 961 IaTTN~p-----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~----l-~~d~dl~~LA~~TeGysg 1023 (1119)
|++||.. ...|+++.|||. .+.++.|+.+++.+|++....... + ..+..+..++..+..|-+
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 9999863 467999999995 799999999999999998776521 1 245567777777776644
No 67
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.64 E-value=7.1e-16 Score=180.06 Aligned_cols=234 Identities=22% Similarity=0.269 Sum_probs=170.9
Q ss_pred CccccccccccccchhhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001227 315 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 393 (1119)
Q Consensus 315 ~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~l 393 (1119)
+..+++|+++... |..+.-|.++....+++++.. +++ +. ..+.|||+||||| ...+||||+|++.+++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g--~~-~p~gvLL~GppGt--GKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG--IE-PPKGVLLYGPPGT--GKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC--CC-CCCceEEECCCCC--ChHHHHHHHHHHhCCCEEEe
Confidence 4567899999888 888999999988888887753 332 22 2357999999999 79999999999999887776
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce
Q 001227 394 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 473 (1119)
Q Consensus 394 Ds~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 473 (1119)
+.+.+..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 5422211
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001227 474 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 553 (1119)
Q Consensus 474 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 553 (1119)
+|+|.
T Consensus 204 ~~~g~--------------------------------------------------------------------------- 208 (389)
T PRK03992 204 KFIGE--------------------------------------------------------------------------- 208 (389)
T ss_pred hhccc---------------------------------------------------------------------------
Confidence 01110
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC-----CCEEEEeeccCCCcccc
Q 001227 554 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKE 620 (1119)
Q Consensus 554 ~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L~-----g~vvvIgs~~~~d~~k~ 620 (1119)
....+..+|+.+.. ..|.||||||+|.++.. ..+.-..+...|..+. ++|+|||++|
T Consensus 209 ~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn------- 278 (389)
T PRK03992 209 GARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATN------- 278 (389)
T ss_pred hHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecC-------
Confidence 01235567777766 78999999999996542 1222223333333332 4899999999
Q ss_pred cCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhh
Q 001227 621 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 698 (1119)
Q Consensus 621 k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~ 698 (1119)
.||.+|+ |++| ||++.+++++|+.
T Consensus 279 -----------------------~~~~ld~-------------------------------allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 279 -----------------------RIDILDP-------------------------------AILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred -----------------------ChhhCCH-------------------------------HHcCCccCceEEEECCCCH
Confidence 3444555 8888 9999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHh
Q 001227 699 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 777 (1119)
Q Consensus 699 ~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~ 777 (1119)
..|.+|+++|+. ...+ .+.++..||..|.||+|+||+.+|++|...|+.+.. -.+...||+.
T Consensus 305 ~~R~~Il~~~~~--~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~---------------~~i~~~d~~~ 367 (389)
T PRK03992 305 EGRLEILKIHTR--KMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR---------------TEVTMEDFLK 367 (389)
T ss_pred HHHHHHHHHHhc--cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHH
Confidence 999999999964 3344 458899999999999999999999999999987421 1245677877
Q ss_pred hhhhhhh
Q 001227 778 IQSESKS 784 (1119)
Q Consensus 778 a~~eik~ 784 (1119)
+...+.+
T Consensus 368 A~~~~~~ 374 (389)
T PRK03992 368 AIEKVMG 374 (389)
T ss_pred HHHHHhc
Confidence 7666554
No 68
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63 E-value=7.5e-15 Score=166.38 Aligned_cols=177 Identities=24% Similarity=0.448 Sum_probs=131.7
Q ss_pred CCCcccccCcHHHHH---HHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001227 813 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 889 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~---~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~ 889 (1119)
..++++++|++.+.. .|.+++. .....+++||||||||||+||+.||...+.+|..++...
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~--------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE--------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh--------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 357889999988763 3555554 123468999999999999999999999999999998643
Q ss_pred cccccchHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec-
Q 001227 890 SKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT- 964 (1119)
Q Consensus 890 s~~~G~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTT- 964 (1119)
.+.+-++.+++.|++.. ..|||||||+++ +...|.. |+-.+ +++.+++||||
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD~-------lLp~v------E~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQDA-------LLPHV------ENGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhhh-------hhhhh------cCCeEEEEeccC
Confidence 34567899999996543 489999999987 3222322 22222 34678888887
Q ss_pred -CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh--cccC------ChhcHHHHHHHcCCCcHHHHHHH
Q 001227 965 -NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELA------SDVDLEGIANMADGYSGSDLKNL 1029 (1119)
Q Consensus 965 -N~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k--~~l~------~d~dl~~LA~~TeGysg~DL~~L 1029 (1119)
|+...+.+++++|. +++.+...+.++..++++..+.. ..+. ++.-.+.|+..++|-..+.|..|
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~L 213 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLL 213 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHH
Confidence 77789999999999 78899999999999999884433 2222 34557788898888766555433
No 69
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=1.5e-14 Score=162.97 Aligned_cols=199 Identities=21% Similarity=0.247 Sum_probs=136.5
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccc
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 894 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G 894 (1119)
+|++++|++++++.|..++.....+ ..++.+++|+||||||||+||+++|++++.++..+.++.+.. .
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--P- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--c-
Confidence 6899999999999999887532211 233468999999999999999999999998877766543221 1
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhc--cC-Ccc----cCCccEEEEEecCCC
Q 001227 895 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DG-LRT----KDKERVLVLAATNRP 967 (1119)
Q Consensus 895 ~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~l--dg-l~~----k~~~~VlVIaTTN~p 967 (1119)
..+...+... ..+.||||||||.+- ...++.+..+++.....+ .. ... ....++.+|++|+++
T Consensus 70 ---~~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 70 ---GDLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred ---hhHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 1122222222 246899999999883 222333333333222110 00 000 011347899999999
Q ss_pred CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001227 968 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1036 (1119)
Q Consensus 968 ~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~ 1036 (1119)
..+++++++||...+.++.|+.+++.++++..+....+. ++..++.|+..+.|+. +.+.+++..++..
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 999999999998888999999999999999888765443 4556788999998865 4556677665533
No 70
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.63 E-value=1.1e-15 Score=178.32 Aligned_cols=216 Identities=21% Similarity=0.339 Sum_probs=163.3
Q ss_pred CCccccccccccccchhhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001227 314 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 392 (1119)
Q Consensus 314 ~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~ 392 (1119)
-+.-+|+|++.--+ |..|.-|..+.-..|++++.. +++ +. ..+.|||.||||| .+.+||||+|++.++.++-
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l~-~pkgvLL~GppGT--GKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--ID-PPRGVLLYGPPGT--GKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--CC-CCceEEEECCCCC--CHHHHHHHHHHhcCCCEEE
Confidence 34678999998887 999999999998899998763 332 33 4578999999999 7999999999998877665
Q ss_pred EeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCc
Q 001227 393 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 472 (1119)
Q Consensus 393 lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdr 472 (1119)
+..+.+..
T Consensus 210 i~~s~l~~------------------------------------------------------------------------ 217 (398)
T PTZ00454 210 VVGSEFVQ------------------------------------------------------------------------ 217 (398)
T ss_pred EehHHHHH------------------------------------------------------------------------
Confidence 53211100
Q ss_pred eeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcch
Q 001227 473 VKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 552 (1119)
Q Consensus 473 v~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~ 552 (1119)
+|+|.
T Consensus 218 -k~~ge-------------------------------------------------------------------------- 222 (398)
T PTZ00454 218 -KYLGE-------------------------------------------------------------------------- 222 (398)
T ss_pred -Hhcch--------------------------------------------------------------------------
Confidence 11110
Q ss_pred hhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhh---HHHHHHHHhcCC--CCEEEEeeccCCCccc
Q 001227 553 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDA---YGALKSKLENLP--SNVVVIGSHTQLDSRK 619 (1119)
Q Consensus 553 ~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~--------~~~---~~~l~~~L~~L~--g~vvvIgs~~~~d~~k 619 (1119)
....+..+|+.+.. .+|.||||||+|.++... .+. ...+...++.+. .+|+||++||
T Consensus 223 -~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN------ 292 (398)
T PTZ00454 223 -GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN------ 292 (398)
T ss_pred -hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC------
Confidence 11245667777766 899999999999965421 122 223333344432 4899999999
Q ss_pred ccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhh
Q 001227 620 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 697 (1119)
Q Consensus 620 ~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd 697 (1119)
.||.+|+ |++| ||++++++++|+
T Consensus 293 ------------------------~~d~LDp-------------------------------AllR~GRfd~~I~~~~P~ 317 (398)
T PTZ00454 293 ------------------------RADTLDP-------------------------------ALLRPGRLDRKIEFPLPD 317 (398)
T ss_pred ------------------------CchhCCH-------------------------------HHcCCCcccEEEEeCCcC
Confidence 5666776 8888 999999999999
Q ss_pred hhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhh
Q 001227 698 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 698 ~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r 750 (1119)
...|..|+++|+. ..++ .++++++++..|.||+|+||+.+|++|...|+.+
T Consensus 318 ~~~R~~Il~~~~~--~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 318 RRQKRLIFQTITS--KMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHHh--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999975 2344 6789999999999999999999999999999864
No 71
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=3.9e-14 Score=161.87 Aligned_cols=201 Identities=21% Similarity=0.265 Sum_probs=140.1
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 893 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~ 893 (1119)
.+|++++|+++.++.+..++..... . ..++.++||+||||||||++|+++|++++..+..++.+.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 4799999999999999887753111 1 235578999999999999999999999999888776554321
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhh--ccC-Cccc----CCccEEEEEecCC
Q 001227 894 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDG-LRTK----DKERVLVLAATNR 966 (1119)
Q Consensus 894 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~--ldg-l~~k----~~~~VlVIaTTN~ 966 (1119)
...+..++... ..++||||||||.+- ...++.+..+++..... ++. .... .-.++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12334444433 246899999999882 22233333333322111 111 0000 1134788999999
Q ss_pred CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001227 967 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 967 p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~a 1037 (1119)
+..+++.+++||...+.++.|+.+++.+|++.......+. ++..++.|+..+.|+. +.+..++..+...+
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a 230 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFA 230 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 9999999999998889999999999999999988876544 4555888999998865 56666666554433
No 72
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.5e-16 Score=169.50 Aligned_cols=143 Identities=22% Similarity=0.336 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc---------cChhhHHHHHHHHhcC-----CCCEEEEeeccCCCccccc
Q 001227 556 LAINELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEK 621 (1119)
Q Consensus 556 ~~~~~l~ev~~~esk~~p~Ilf~~die~~l~---------~~~~~~~~l~~~L~~L-----~g~vvvIgs~~~~d~~k~k 621 (1119)
.++.+||.|+.+ +.|.|+|||+||. +. +..++-....+.|..| +|-|-||-|||+.++
T Consensus 265 klvRqlF~vA~e---~apSIvFiDEIdA-iGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~---- 336 (440)
T KOG0726|consen 265 KLVRELFRVAEE---HAPSIVFIDEIDA-IGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET---- 336 (440)
T ss_pred HHHHHHHHHHHh---cCCceEEeehhhh-hccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc----
Confidence 378899999999 9999999999999 54 3355555555666666 459999999997665
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhh
Q 001227 622 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 699 (1119)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~ 699 (1119)
+|| ||.| |.+|.++|++||++
T Consensus 337 ------------------LDP---------------------------------------aLiRPGrIDrKIef~~pDe~ 359 (440)
T KOG0726|consen 337 ------------------LDP---------------------------------------ALIRPGRIDRKIEFPLPDEK 359 (440)
T ss_pred ------------------cCH---------------------------------------hhcCCCccccccccCCCchh
Confidence 333 9999 99999999999999
Q ss_pred cccchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhh
Q 001227 700 GQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 778 (1119)
Q Consensus 700 gR~~Il~IhT~-l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a 778 (1119)
.++.|+.|||. |.- -.+++|++|-....-++||||.++|++|-..|+.. +.+.++..||..+
T Consensus 360 TkkkIf~IHTs~Mtl--~~dVnle~li~~kddlSGAdIkAictEaGllAlRe---------------rRm~vt~~DF~ka 422 (440)
T KOG0726|consen 360 TKKKIFQIHTSRMTL--AEDVNLEELIMTKDDLSGADIKAICTEAGLLALRE---------------RRMKVTMEDFKKA 422 (440)
T ss_pred hhceeEEEeecccch--hccccHHHHhhcccccccccHHHHHHHHhHHHHHH---------------HHhhccHHHHHHH
Confidence 99999999995 431 27899999999999999999999999999999973 3345677788765
Q ss_pred hh
Q 001227 779 QS 780 (1119)
Q Consensus 779 ~~ 780 (1119)
..
T Consensus 423 ~e 424 (440)
T KOG0726|consen 423 KE 424 (440)
T ss_pred HH
Confidence 43
No 73
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.5e-15 Score=161.64 Aligned_cols=145 Identities=19% Similarity=0.236 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEeeccCCCcccccC
Q 001227 556 LAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKS 622 (1119)
Q Consensus 556 ~~~~~l~ev~~~esk~~p~Ilf~~die~~l~--------~~~~~~~~l~~~L~~L~g-----~vvvIgs~~~~d~~k~k~ 622 (1119)
+.+.+||=++.+ +.|.|||+|+||.+=. +..+.-....+.|.+|.| ++-||-|||+.|-
T Consensus 227 rmvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi----- 298 (404)
T KOG0728|consen 227 RMVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI----- 298 (404)
T ss_pred HHHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc-----
Confidence 367889999999 9999999999998422 345555556666777766 9999999997554
Q ss_pred CCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhc
Q 001227 623 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 700 (1119)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~g 700 (1119)
+ |+ |||| |.+|.+|||-|++++
T Consensus 299 -----------------l--------d~-------------------------------allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 299 -----------------L--------DP-------------------------------ALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred -----------------c--------cH-------------------------------hhcCCCcccccccCCCCCHHH
Confidence 3 33 9999 999999999999999
Q ss_pred ccchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhh
Q 001227 701 QSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQ 779 (1119)
Q Consensus 701 R~~Il~IhT~-l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~ 779 (1119)
|.+|++||++ |. -.-..+|..+|++..|-+||++.++|++|--+|+.. +.+-++..||+.+.
T Consensus 323 r~~ilkihsrkmn--l~rgi~l~kiaekm~gasgaevk~vcteagm~alre---------------rrvhvtqedfemav 385 (404)
T KOG0728|consen 323 RLDILKIHSRKMN--LTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRE---------------RRVHVTQEDFEMAV 385 (404)
T ss_pred HHHHHHHhhhhhc--hhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHH---------------hhccccHHHHHHHH
Confidence 9999999987 32 225678999999999999999999999999999972 23345566776664
Q ss_pred hh
Q 001227 780 SE 781 (1119)
Q Consensus 780 ~e 781 (1119)
.+
T Consensus 386 ~k 387 (404)
T KOG0728|consen 386 AK 387 (404)
T ss_pred HH
Confidence 43
No 74
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.7e-15 Score=175.21 Aligned_cols=212 Identities=20% Similarity=0.274 Sum_probs=163.3
Q ss_pred cccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001227 317 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 396 (1119)
Q Consensus 317 ~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~ 396 (1119)
-+|-|+.||.- +..|..|.+++-..+..++.. .+|.+.-+.|||.||+|| -..||+||+|-+.+|.+.-+-.+
T Consensus 148 ~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F---~glr~p~rglLLfGPpgt--GKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 148 RNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLF---LGLREPVRGLLLFGPPGT--GKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred CcccccCCcch--hhHHHHhhhhhhhcccchHhh---hccccccchhheecCCCC--chHHHHHHHHhhhcceEeeccHH
Confidence 35789999998 899999999999888887763 488888899999999999 79999999999999987655544
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceeee
Q 001227 397 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 476 (1119)
Q Consensus 397 ~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~ 476 (1119)
.|++. |+
T Consensus 221 sLtsK-------------------------------------------------------------------------~~ 227 (428)
T KOG0740|consen 221 SLTSK-------------------------------------------------------------------------YV 227 (428)
T ss_pred Hhhhh-------------------------------------------------------------------------cc
Confidence 44332 22
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhhHH
Q 001227 477 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 556 (1119)
Q Consensus 477 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k~ 556 (1119)
| +..-
T Consensus 228 G---------------------------------------------------------------------------e~eK 232 (428)
T KOG0740|consen 228 G---------------------------------------------------------------------------ESEK 232 (428)
T ss_pred C---------------------------------------------------------------------------hHHH
Confidence 2 1223
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC----CCCEEEEeeccCCCcccccCCC
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHP 624 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L----~g~vvvIgs~~~~d~~k~k~~~ 624 (1119)
++.+||+|+.. .+|.|+||+|+|.+|+. +.++...|.-.++.. ..+|+||||||
T Consensus 233 ~vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN----------- 298 (428)
T KOG0740|consen 233 LVRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN----------- 298 (428)
T ss_pred HHHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC-----------
Confidence 67889999999 99999999999999982 222222222122211 34999999999
Q ss_pred CCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHHhhhhhhhhcccch
Q 001227 625 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 704 (1119)
Q Consensus 625 ~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~e~~Lpd~~gR~~I 704 (1119)
+|+.+|. |.+|||-+-+|+++||..+|..+
T Consensus 299 -------------------~P~e~De-------------------------------a~~Rrf~kr~yiplPd~etr~~~ 328 (428)
T KOG0740|consen 299 -------------------RPWELDE-------------------------------AARRRFVKRLYIPLPDYETRSLL 328 (428)
T ss_pred -------------------CchHHHH-------------------------------HHHHHhhceeeecCCCHHHHHHH
Confidence 6777775 88888888888888888888766
Q ss_pred hHHHHHhhh--CCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhh
Q 001227 705 ISIRSVLSR--NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 749 (1119)
Q Consensus 705 l~IhT~l~~--~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~ 749 (1119)
++= .|.+ +.+.+.+++.|+..|.||+|.||..+|.+|+..-+.
T Consensus 329 ~~~--ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 329 WKQ--LLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred HHH--HHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 542 2333 456888999999999999999999999999876554
No 75
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.58 E-value=3.1e-15 Score=179.90 Aligned_cols=216 Identities=24% Similarity=0.373 Sum_probs=158.4
Q ss_pred cCCCccccccccccccchhhHHHHHHHhhhhhccccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001227 312 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 390 (1119)
Q Consensus 312 ~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~-~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~L 390 (1119)
...+..+++|++++-+ ++.|.-|..... .|++++ |.+++. ...+.|||.||||| -+.+||||||++.++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~-~l~~~~~~~~~g~---~~~~giLL~GppGt--GKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVD-FLKNPSKFTKLGA---KIPKGVLLVGPPGT--GKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHH-HHHCHHHHHhcCC---CCCCcEEEECCCCC--CHHHHHHHHHHHcCCCe
Confidence 3455779999999877 999988887766 477765 333432 33467999999999 79999999999998887
Q ss_pred EEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccC
Q 001227 391 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 470 (1119)
Q Consensus 391 L~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 470 (1119)
+.++.+.+..
T Consensus 117 ~~i~~~~~~~---------------------------------------------------------------------- 126 (495)
T TIGR01241 117 FSISGSDFVE---------------------------------------------------------------------- 126 (495)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6554322110
Q ss_pred CceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCc
Q 001227 471 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 550 (1119)
Q Consensus 471 drv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 550 (1119)
.|+|.
T Consensus 127 ---~~~g~------------------------------------------------------------------------ 131 (495)
T TIGR01241 127 ---MFVGV------------------------------------------------------------------------ 131 (495)
T ss_pred ---HHhcc------------------------------------------------------------------------
Confidence 00000
Q ss_pred chhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCc
Q 001227 551 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDS 617 (1119)
Q Consensus 551 ~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~---~~~~~~l~~~L~~L~--g~vvvIgs~~~~d~ 617 (1119)
..-.+..+|+.+.. ..|.||||||+|.+... + .+..+.|...++.+. ++|+|||+||
T Consensus 132 ---~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn---- 201 (495)
T TIGR01241 132 ---GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATN---- 201 (495)
T ss_pred ---cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecC----
Confidence 00134556666655 78999999999996541 1 123333444445443 3799999999
Q ss_pred ccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhh
Q 001227 618 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 695 (1119)
Q Consensus 618 ~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~L 695 (1119)
.|+.+|+ |++| ||++++++++
T Consensus 202 --------------------------~~~~ld~-------------------------------al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 202 --------------------------RPDVLDP-------------------------------ALLRPGRFDRQVVVDL 224 (495)
T ss_pred --------------------------ChhhcCH-------------------------------HHhcCCcceEEEEcCC
Confidence 5666776 9988 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhh
Q 001227 696 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 749 (1119)
Q Consensus 696 pd~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~ 749 (1119)
|+...|.+|+++|.. ..++ ++.++..+|..|.||+++||+.+|++|+..+..
T Consensus 225 Pd~~~R~~il~~~l~--~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 225 PDIKGREEILKVHAK--NKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAAR 277 (495)
T ss_pred CCHHHHHHHHHHHHh--cCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999864 2233 678899999999999999999999999887765
No 76
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.57 E-value=3.6e-14 Score=171.71 Aligned_cols=218 Identities=22% Similarity=0.305 Sum_probs=144.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 882 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~ 882 (1119)
..+|++++|.+..++.++..+.. ..+.++||+||||||||++|+++.+.+ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 46899999999999888865421 123589999999999999999998653 368999
Q ss_pred EecCcc-------ccccccchHHH----------------HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHH
Q 001227 883 ISMSSI-------TSKWFGEGEKY----------------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 939 (1119)
Q Consensus 883 V~~s~L-------~s~~~G~~e~~----------------I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~l 939 (1119)
++|... ....++..... -...+..| ..++||||||+.| +...+..+.++
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L-----~~~~q~~LL~~ 198 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGEL-----HPVQMNKLLKV 198 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhC-----CHHHHHHHHHH
Confidence 998642 11111110000 00122222 3489999999998 33445555555
Q ss_pred HHhhhhhccC-----C------------cccCCccEEEE-EecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHh
Q 001227 940 KNEFMVNWDG-----L------------RTKDKERVLVL-AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1001 (1119)
Q Consensus 940 l~~Ll~~ldg-----l------------~~k~~~~VlVI-aTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~ 1001 (1119)
+++....+.+ . ...-+..+.+| +||+.++.+++++++|+ ..+.++.++.+++.+|++..++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHH
Confidence 5443222211 0 00012234555 55678999999999998 5678888899999999999998
Q ss_pred hcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHH
Q 001227 1002 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAH 1080 (1119)
Q Consensus 1002 k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al 1080 (1119)
+..+. ++..++.|+..+ .+++++.++++.|+..+..+ ....|+.+|+..++
T Consensus 278 k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~--------------------------~~~~It~~dI~~vl 329 (531)
T TIGR02902 278 KIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGE--------------------------GRKRILAEDIEWVA 329 (531)
T ss_pred HcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhC--------------------------CCcEEcHHHHHHHh
Confidence 86644 444566676665 37899999999888655332 11358888888887
Q ss_pred H
Q 001227 1081 E 1081 (1119)
Q Consensus 1081 ~ 1081 (1119)
.
T Consensus 330 ~ 330 (531)
T TIGR02902 330 E 330 (531)
T ss_pred C
Confidence 6
No 77
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.57 E-value=2.3e-14 Score=178.47 Aligned_cols=197 Identities=19% Similarity=0.285 Sum_probs=143.2
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 884 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V~ 884 (1119)
.++.++|.++....+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 456789999999988887652 123578999999999999999999875 44556666
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 001227 885 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 962 (1119)
Q Consensus 885 ~s~L~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIa 962 (1119)
...+. ..+.|+.+..++.+|..+.+..++||||||||.|++.+...+.+.....++..++ .+..+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 55554 3467888899999999998888899999999999876643333322223333332 236799999
Q ss_pred ecCCCC-----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCC-----hhcHHHHHHHcCC-----CcHHHHH
Q 001227 963 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-----DVDLEGIANMADG-----YSGSDLK 1027 (1119)
Q Consensus 963 TTN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~-----d~dl~~LA~~TeG-----ysg~DL~ 1027 (1119)
+|+.++ ..|+++.||| ..|.++.|+.+++.+||+.+..++.... +..+..++..+.. +.+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998754 6799999999 4799999999999999998876644332 3334444444443 3455666
Q ss_pred HHHHHHHh
Q 001227 1028 NLCVTAAH 1035 (1119)
Q Consensus 1028 ~L~~~Aa~ 1035 (1119)
.++.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 77777764
No 78
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.57 E-value=3.3e-14 Score=179.14 Aligned_cols=212 Identities=18% Similarity=0.250 Sum_probs=140.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--------
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 889 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~-------- 889 (1119)
++.|++++++.+.+++.....+. . .....+||+||||||||++|++||+.++.+++.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------K--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------C--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 58899999999999876433211 1 1224799999999999999999999999999999876432
Q ss_pred -cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHh-----hhhhccCCcccCCccEEEEEe
Q 001227 890 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 963 (1119)
Q Consensus 890 -s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~-----Ll~~ldgl~~k~~~~VlVIaT 963 (1119)
..|.|.....+.+.|..+....| ||||||||.+...... .....+..++.. |+....+.. -+..++++|+|
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~~aLl~~ld~~~~~~f~d~~~~~~-~d~s~v~~I~T 469 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPASALLEVLDPEQNNAFSDHYLDVP-FDLSKVIFIAT 469 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHHHHHHHhcCHHhcCccccccCCce-eccCCEEEEEe
Confidence 23556666677788888766555 8999999999643221 111222222211 111110111 11257899999
Q ss_pred cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh-----cccC------ChhcHHHHHH-HcCCCcHHHHHHHHH
Q 001227 964 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EELA------SDVDLEGIAN-MADGYSGSDLKNLCV 1031 (1119)
Q Consensus 964 TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k-----~~l~------~d~dl~~LA~-~TeGysg~DL~~L~~ 1031 (1119)
||..+.+++++++|| .+|.++.|+.+++.+|++.++.. ..+. ++..+..|+. .+..+..++|+..+.
T Consensus 470 tN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 470 ANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred cCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 999999999999999 57899999999999999887632 1121 2333444444 223344466666655
Q ss_pred HHHhhhHHHH
Q 001227 1032 TAAHCPIREI 1041 (1119)
Q Consensus 1032 ~Aa~~airrl 1041 (1119)
..+..+.+++
T Consensus 549 ~~~~~~~~~~ 558 (775)
T TIGR00763 549 KICRKAAVKL 558 (775)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 79
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-14 Score=174.25 Aligned_cols=128 Identities=21% Similarity=0.396 Sum_probs=106.2
Q ss_pred HHHHHHHhhccCCCCeEEEEcChhhhhcc---------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCC
Q 001227 559 NELFEVALNESKSSPLIVFVKDIEKSLTG---------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 624 (1119)
Q Consensus 559 ~~l~ev~~~esk~~p~Ilf~~die~~l~~---------~---~~~~~~l~~~L~~L~--g~vvvIgs~~~~d~~k~k~~~ 624 (1119)
..||+-+.+ +.|.|||||++|. +.+ | ++..+.+...++.+. .+||||+|||
T Consensus 232 RdLF~qAkk---~aP~IIFIDEiDA-vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTN----------- 296 (596)
T COG0465 232 RDLFEQAKK---NAPCIIFIDEIDA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATN----------- 296 (596)
T ss_pred HHHHHHhhc---cCCCeEEEehhhh-cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCC-----------
Confidence 456666666 8999999999999 652 2 245566666666665 3899999999
Q ss_pred CCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhccc
Q 001227 625 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 702 (1119)
Q Consensus 625 ~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~ 702 (1119)
+||-.|+ ||+| ||+||+-.++||+++|.
T Consensus 297 -------------------RpdVlD~-------------------------------ALlRpgRFDRqI~V~~PDi~gRe 326 (596)
T COG0465 297 -------------------RPDVLDP-------------------------------ALLRPGRFDRQILVELPDIKGRE 326 (596)
T ss_pred -------------------CcccchH-------------------------------hhcCCCCcceeeecCCcchhhHH
Confidence 6666776 9999 99999999999999999
Q ss_pred chhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCC
Q 001227 703 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 753 (1119)
Q Consensus 703 ~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~ 753 (1119)
+|+++|. +.-++ +++++..+|..|.||+||+++.++.+|+.+|.++...
T Consensus 327 ~IlkvH~--~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 327 QILKVHA--KNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred HHHHHHh--hcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 9999995 44444 8999999999999999999999999999999986543
No 80
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.56 E-value=9.5e-15 Score=171.96 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC-----CCCEEEEeeccCCCcccccCC
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSH 623 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L-----~g~vvvIgs~~~~d~~k~k~~ 623 (1119)
.+..+|+.+.. ..|.||||||+|.++.. ..+....+...|..+ .++|.||++||+
T Consensus 264 ~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr--------- 331 (438)
T PTZ00361 264 LVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNR--------- 331 (438)
T ss_pred HHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCC---------
Confidence 45667777766 78999999999996642 123333333444333 358999999993
Q ss_pred CCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcc
Q 001227 624 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 701 (1119)
Q Consensus 624 ~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR 701 (1119)
||.+|+ |++| ||++++++++||...|
T Consensus 332 ---------------------~d~LDp-------------------------------aLlRpGRfd~~I~~~~Pd~~~R 359 (438)
T PTZ00361 332 ---------------------IESLDP-------------------------------ALIRPGRIDRKIEFPNPDEKTK 359 (438)
T ss_pred ---------------------hHHhhH-------------------------------HhccCCeeEEEEEeCCCCHHHH
Confidence 344554 8888 9999999999999999
Q ss_pred cchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhh
Q 001227 702 SNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 702 ~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r 750 (1119)
.+|+++|+. .-.+ ++++++.++..+.||+|+||+.+|++|...|+.+
T Consensus 360 ~~Il~~~~~--k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 360 RRIFEIHTS--KMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRE 407 (438)
T ss_pred HHHHHHHHh--cCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999975 2234 6789999999999999999999999999999974
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.54 E-value=1.7e-13 Score=173.49 Aligned_cols=185 Identities=19% Similarity=0.338 Sum_probs=138.4
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 883 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V 883 (1119)
..+++++|.++....+.+.+.. +...+++|+||||||||++|+.+|+.+ +.+++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4677899999987777665542 223579999999999999999999886 3557788
Q ss_pred ecCcccc--ccccchHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001227 884 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 960 (1119)
Q Consensus 884 ~~s~L~s--~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlV 960 (1119)
+.+.+.. .+.|+.+..++.+|..++.. .+.||||||||.|.+.+...+.+...+ + |.-.+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n-~---Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN-L---LKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH-H---hhHHh------hCCCeEE
Confidence 8877653 57788899999999999754 578999999999987554333332221 2 21111 2367899
Q ss_pred EEecCCC-----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc----c-CChhcHHHHHHHcCCCcH
Q 001227 961 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 961 IaTTN~p-----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~----l-~~d~dl~~LA~~TeGysg 1023 (1119)
||||+.. ..+|+++.||| ..|.++.|+.+++.+||+.+..... + ..+..+..++..+.+|..
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 9999753 46899999999 5899999999999999877765432 1 256678889999988844
No 82
>CHL00176 ftsH cell division protein; Validated
Probab=99.53 E-value=2.8e-14 Score=175.00 Aligned_cols=219 Identities=20% Similarity=0.298 Sum_probs=158.2
Q ss_pred ccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001227 311 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 390 (1119)
Q Consensus 311 i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~L 390 (1119)
+....+..++|+++.-+ +..|.-|.+... .|++++. |..-=....+.|||.||||| -+.+||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~-~lk~~~~--~~~~g~~~p~gVLL~GPpGT--GKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVS-FLKKPER--FTAVGAKIPKGVLLVGPPGT--GKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHH-HHhCHHH--HhhccCCCCceEEEECCCCC--CHHHHHHHHHHHhCCCe
Confidence 34556788999999888 888888888765 4777654 33322344577999999999 79999999999998887
Q ss_pred EEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccC
Q 001227 391 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 470 (1119)
Q Consensus 391 L~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 470 (1119)
+-++.+.+..
T Consensus 245 i~is~s~f~~---------------------------------------------------------------------- 254 (638)
T CHL00176 245 FSISGSEFVE---------------------------------------------------------------------- 254 (638)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6654322110
Q ss_pred CceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCc
Q 001227 471 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 550 (1119)
Q Consensus 471 drv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 550 (1119)
.|+|.
T Consensus 255 ---~~~g~------------------------------------------------------------------------ 259 (638)
T CHL00176 255 ---MFVGV------------------------------------------------------------------------ 259 (638)
T ss_pred ---Hhhhh------------------------------------------------------------------------
Confidence 00000
Q ss_pred chhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChh---hHHHHHHHHhcCC--CCEEEEeeccCCCc
Q 001227 551 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNND---AYGALKSKLENLP--SNVVVIGSHTQLDS 617 (1119)
Q Consensus 551 ~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~--------~~~~---~~~~l~~~L~~L~--g~vvvIgs~~~~d~ 617 (1119)
..-.+..+|+.+.. ..|.||||||+|.+.. ++.+ ..+.|...++.+. .+|+|||+||
T Consensus 260 ---~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN---- 329 (638)
T CHL00176 260 ---GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATN---- 329 (638)
T ss_pred ---hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecC----
Confidence 00123455666554 7899999999999542 1222 2333333334333 3899999999
Q ss_pred ccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhh
Q 001227 618 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 695 (1119)
Q Consensus 618 ~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~L 695 (1119)
.|+.+|+ ||+| ||++++++++
T Consensus 330 --------------------------~~~~LD~-------------------------------ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 330 --------------------------RVDILDA-------------------------------ALLRPGRFDRQITVSL 352 (638)
T ss_pred --------------------------chHhhhh-------------------------------hhhccccCceEEEECC
Confidence 4445555 8988 9999999999
Q ss_pred hhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhh
Q 001227 696 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 696 pd~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r 750 (1119)
|+.+.|.+|++.|... ..+ +++++..||..|.||+|+||+.+|++|+..+..+
T Consensus 353 Pd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 353 PDREGRLDILKVHARN--KKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred CCHHHHHHHHHHHHhh--cccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999653 333 6889999999999999999999999998887653
No 83
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2e-14 Score=154.27 Aligned_cols=127 Identities=22% Similarity=0.332 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc---------cChhhHHHHHHHHhcC-----CCCEEEEeeccCCCccccc
Q 001227 556 LAINELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEK 621 (1119)
Q Consensus 556 ~~~~~l~ev~~~esk~~p~Ilf~~die~~l~---------~~~~~~~~l~~~L~~L-----~g~vvvIgs~~~~d~~k~k 621 (1119)
+.+.+||+++.. +...||||++||. +. +.++.-....+.+.+| +||+-|+-|||
T Consensus 257 rmvrelf~mart---kkaciiffdeida-iggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatn-------- 324 (435)
T KOG0729|consen 257 RMVRELFEMART---KKACIIFFDEIDA-IGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATN-------- 324 (435)
T ss_pred HHHHHHHHHhcc---cceEEEEeecccc-ccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecC--------
Confidence 367899999999 8999999999999 54 3455544444444444 56999999999
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhh
Q 001227 622 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 699 (1119)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~ 699 (1119)
+||.+|| ||+| |++|.+||.|||++
T Consensus 325 ----------------------rpdtldp-------------------------------allrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 325 ----------------------RPDTLDP-------------------------------ALLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred ----------------------CCCCcCH-------------------------------hhcCCcccccceeccCCccc
Confidence 7888887 9999 99999999999999
Q ss_pred cccchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhh
Q 001227 700 GQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 749 (1119)
Q Consensus 700 gR~~Il~IhT~-l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~ 749 (1119)
||.+|++||++ |.-. .+.-.+-||.++.+-+||+|+.+|++|--+|+.
T Consensus 352 grt~i~kihaksmsve--rdir~ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 352 GRTHIFKIHAKSMSVE--RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred ccceeEEEeccccccc--cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 99999999997 5421 344566799999999999999999999999986
No 84
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.5e-13 Score=149.83 Aligned_cols=189 Identities=23% Similarity=0.316 Sum_probs=141.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
...|++.+|+++++++|.=++.....+. ...-++||+||||.|||+||..||+++|.++...+++.+...
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~---------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG---------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC---------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh-
Confidence 3579999999999999998887644432 244689999999999999999999999999988887765321
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhcc-CCccc------CCccEEEEEecC
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTK------DKERVLVLAATN 965 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ld-gl~~k------~~~~VlVIaTTN 965 (1119)
.-+..++.... ...|||||||++| ++...+.+--.+..|...+- |..+. +-.++-+|++|.
T Consensus 92 -----gDlaaiLt~Le--~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 92 -----GDLAAILTNLE--EGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -----hhHHHHHhcCC--cCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 23334444332 2479999999998 44445555555555543221 11111 125788999999
Q ss_pred CCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 966 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 966 ~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
+...|...++.||+....+..++.++..+|+........+. .+....++|+.+.|...
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 99999999999999999999999999999999987776655 44557889999988543
No 85
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.2e-13 Score=164.21 Aligned_cols=184 Identities=21% Similarity=0.244 Sum_probs=133.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 878 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 878 (1119)
..+|++|+|++.+++.|.+.+.. .+.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 46899999999999999998863 233456899999999999999999999876
Q ss_pred ---------------cEEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHH
Q 001227 879 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKM 939 (1119)
Q Consensus 879 ---------------~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~l 939 (1119)
.+++++... ......++.+.+.+.. ....|+||||+|.|- ...
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~A 140 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHA 140 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHH
Confidence 223333221 1123345555554432 234799999999882 224
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc
Q 001227 940 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1018 (1119)
Q Consensus 940 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~T 1018 (1119)
.|.|+..|+. ...++++|.+|+.++.|.+.+++|| ..+.|..++.++..+.++.++..+.+. ++..++.|+..+
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4566666654 3366888999999999999999999 789999999999999999888776654 334467788888
Q ss_pred CCCcHHHHHHHHHHH
Q 001227 1019 DGYSGSDLKNLCVTA 1033 (1119)
Q Consensus 1019 eGysg~DL~~L~~~A 1033 (1119)
+|- .++..+++..+
T Consensus 216 ~Gs-~RdALsLLdQa 229 (700)
T PRK12323 216 QGS-MRDALSLTDQA 229 (700)
T ss_pred CCC-HHHHHHHHHHH
Confidence 875 44555555543
No 86
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.51 E-value=4.5e-13 Score=169.97 Aligned_cols=185 Identities=22% Similarity=0.347 Sum_probs=141.1
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 883 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V 883 (1119)
..++.++|.++..+.+.+.+.. +..+++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3577899999999999887752 234589999999999999999999886 4789999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001227 884 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 961 (1119)
Q Consensus 884 ~~s~L~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVI 961 (1119)
++..+. ..+.|+.+..++.+|+.+....+.||||||||.|++.....+..... .++...+ .++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a-~lLkp~l---------~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA-NILKPAL---------ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH-HHhHHHH---------hCCCcEEE
Confidence 988776 35778889999999999988888999999999998765433322211 1221111 23678999
Q ss_pred EecCCCC-----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhh----ccc-CChhcHHHHHHHcCCCcH
Q 001227 962 AATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 962 aTTN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k----~~l-~~d~dl~~LA~~TeGysg 1023 (1119)
++|+..+ ..++++.+||. .+.++.|+.++...|++.+... ..+ .++..+..++..+.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 9998653 57899999994 6789999999999999876543 122 255567888888888754
No 87
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.2e-13 Score=158.39 Aligned_cols=183 Identities=17% Similarity=0.234 Sum_probs=132.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++++|++.+...|...+.. .+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 46899999999999999888762 2233469999999999999999999998653
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
++.++.+. ..+...++.+.+.+. .....|+||||+|.|- ....+.|+
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 23333211 111234455444443 2234699999999882 22445555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++. .+..+++|++|+.++.+.+++++|+ ..+.|..++.++-.++++.++..+++. ++..+..|+..++|...
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHH
Confidence 55544 3467889999999999999999999 678899999999999999998877654 56668889999888654
Q ss_pred HHHHHHHHH
Q 001227 1024 SDLKNLCVT 1032 (1119)
Q Consensus 1024 ~DL~~L~~~ 1032 (1119)
+..+++..
T Consensus 218 -dAL~lLeq 225 (484)
T PRK14956 218 -DMLSFMEQ 225 (484)
T ss_pred -HHHHHHHH
Confidence 44444443
No 88
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=5.1e-13 Score=162.86 Aligned_cols=185 Identities=21% Similarity=0.239 Sum_probs=133.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 46899999999999999998762 2334568999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
+++++..+ ......++.+++.+.. ....|+||||+|.|- ....+.|+
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALL 140 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAML 140 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHH
Confidence 33333221 1122345566655542 234799999999882 12234445
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..|+. ....+.+|.+||.++.|.+.+++|| ..+.|..++.++..++|+.++..+++. ++..+..|++.++|-..
T Consensus 141 KtLEE----PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 141 KTLEE----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred HHHHh----cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 44443 2356889999999999999999999 789999999999999999998887654 55668888999988654
Q ss_pred HHHHHHHHHHH
Q 001227 1024 SDLKNLCVTAA 1034 (1119)
Q Consensus 1024 ~DL~~L~~~Aa 1034 (1119)
+..+++..+.
T Consensus 216 -dALsLLdQAi 225 (830)
T PRK07003 216 -DALSLTDQAI 225 (830)
T ss_pred -HHHHHHHHHH
Confidence 4444444443
No 89
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.49 E-value=7e-13 Score=147.72 Aligned_cols=208 Identities=24% Similarity=0.410 Sum_probs=140.6
Q ss_pred CCcccccCcHHHHHH---HHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCc
Q 001227 814 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSS 887 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~---L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~---fi~V~~s~ 887 (1119)
.+++|.+|++.+..+ |+.+++ ....++++|+||||||||+||+.|+.....+ |++++...
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ie--------------q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIE--------------QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHH--------------cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 467777777766543 333333 1234589999999999999999999988655 77776543
Q ss_pred cccccccchHHHHHHHHHHHHhc-----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 001227 888 ITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 962 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIa 962 (1119)
...+.++.+|+.+++. ...|||||||+++ +...| ..|+-. -+++.|++|+
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----NksQQ-------D~fLP~------VE~G~I~lIG 255 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKSQQ-------DTFLPH------VENGDITLIG 255 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhhhh-------hcccce------eccCceEEEe
Confidence 2345789999998754 3589999999976 21111 223322 2347789998
Q ss_pred ec--CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh----c----cc------CChhcHHHHHHHcCCCcHHHH
Q 001227 963 AT--NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----E----EL------ASDVDLEGIANMADGYSGSDL 1026 (1119)
Q Consensus 963 TT--N~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k----~----~l------~~d~dl~~LA~~TeGysg~DL 1026 (1119)
+| |+...|..++++|+ +++.+.....++...||..-+.- . .+ .++.-++.|+..++|-....|
T Consensus 256 ATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 87 67789999999999 67888888888888888875541 1 11 123447889999999887777
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhc
Q 001227 1027 KNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1027 ~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~ 1084 (1119)
..|-..+.+...|. +..+...|+.+|+++++..-.
T Consensus 335 N~Lems~~m~~tr~-----------------------g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 335 NALEMSLSMFCTRS-----------------------GQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHHHHHHHHHhhc-----------------------CCcccceecHHHHHHHHhhcc
Confidence 65533222111111 111334688899988887644
No 90
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.48 E-value=4.6e-13 Score=159.41 Aligned_cols=168 Identities=19% Similarity=0.290 Sum_probs=113.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 927 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 927 (1119)
.+++||||+|+|||+|++++++++ +..++++++.++...+...........|....+ .+.+|+||||+.+.++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 567889998877655433222111122333222 46899999999884322
Q ss_pred CCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001227 928 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 928 ~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
..++.+..+++.+... ...+||+++..|.. +++.+.+||. ..+.+..|+.++|..|++..+..
T Consensus 228 ---~~~~~l~~~~n~l~~~---------~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ---RTQEEFFHTFNALHEA---------GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ---HHHHHHHHHHHHHHHC---------CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1233333444444311 23456666666554 6788999995 47889999999999999999887
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 001227 1003 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 1003 ~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa 1034 (1119)
..+. ++..++.||....| +.++|..++....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHH
Confidence 5543 55668888888766 4556655555443
No 91
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.48 E-value=3.3e-13 Score=171.36 Aligned_cols=183 Identities=22% Similarity=0.368 Sum_probs=135.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 883 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V 883 (1119)
..+++++|.+.....+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3577899999987777776642 123579999999999999999999987 6889999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001227 884 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 960 (1119)
Q Consensus 884 ~~s~L~--s~~~G~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlV 960 (1119)
+...+. ..+.|+.+..++.+|..+.+ ..+.||||||+|.|.+.....+.....+ ++...+ .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~-~lkp~l---------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN-MLKPAL---------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHH-Hhcchh---------hcCCCeE
Confidence 888765 35778889999999998654 4689999999999986654433333222 221111 3467999
Q ss_pred EEecCCCC-----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-----ChhcHHHHHHHcCCC
Q 001227 961 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1021 (1119)
Q Consensus 961 IaTTN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-----~d~dl~~LA~~TeGy 1021 (1119)
||||+..+ .+|+++.|||. .|.+..|+.+++..|++.+....... .+..+...+..+.+|
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 99998765 58999999995 68899999999999999887653322 334445555555555
No 92
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.7e-14 Score=150.47 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=105.4
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEeeccCCCcccccCC
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 623 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~--------~~~~~~~~l~~~L~~L~g-----~vvvIgs~~~~d~~k~k~~ 623 (1119)
++...|..+++ +.|.||||+++|.+=. |..+.-......|..|.| .|-||+|||+.|-
T Consensus 252 LVRDAFaLAKE---kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi------ 322 (424)
T KOG0652|consen 252 LVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI------ 322 (424)
T ss_pred HHHHHHHHhhc---cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc------
Confidence 45566778888 9999999999998422 455555555556666654 8999999996554
Q ss_pred CCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcc
Q 001227 624 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 701 (1119)
Q Consensus 624 ~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR 701 (1119)
+|| |||| |++|.+|||+|++.+|
T Consensus 323 ------------------------LDP-------------------------------ALlRSGRLDRKIEfP~Pne~aR 347 (424)
T KOG0652|consen 323 ------------------------LDP-------------------------------ALLRSGRLDRKIEFPHPNEEAR 347 (424)
T ss_pred ------------------------cCH-------------------------------HHhhcccccccccCCCCChHHH
Confidence 444 9999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhh
Q 001227 702 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 702 ~~Il~IhT~-l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r 750 (1119)
..|++||.+ |.- -+|++.++||..|..|.||...++|-+|--.|+.|
T Consensus 348 arIlQIHsRKMnv--~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 348 ARILQIHSRKMNV--SDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRR 395 (424)
T ss_pred HHHHHHhhhhcCC--CCCCCHHHHhhcccccCchhheeeehhhhHHHHhc
Confidence 999999986 432 27899999999999999999999999999999875
No 93
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.48 E-value=7.2e-13 Score=155.66 Aligned_cols=169 Identities=20% Similarity=0.287 Sum_probs=111.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 927 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 927 (1119)
..++||||+|+|||+|++++++++ +..++++++.++...+...........|....+ .+.+|+||||+.+.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 469999999999999999999887 577889998776554332211101112222222 35799999999885322
Q ss_pred CCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001227 928 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 928 ~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
..++.+..+++.+.. ....+||+++..|. .+++.+++||. ..+.++.|+.++|..|++..+..
T Consensus 216 ---~~~~~l~~~~n~~~~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ---RTQEEFFHTFNALHE---------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---HHHHHHHHHHHHHHH---------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 123333344443321 12345565555554 35688899995 46899999999999999999987
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001227 1003 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 1003 ~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~ 1035 (1119)
..+. ++..++.||....+ +.++|..+++....
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLA 316 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 6554 56668888988765 55666666655443
No 94
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.48 E-value=6.6e-13 Score=168.98 Aligned_cols=185 Identities=21% Similarity=0.356 Sum_probs=138.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 883 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V 883 (1119)
..++.++|.++....+.+.+.. +...+++|+||||+|||++|+++|..+ +.+++.+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3567899999987777776642 223578999999999999999999886 6788888
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001227 884 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 960 (1119)
Q Consensus 884 ~~s~L~--s~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlV 960 (1119)
+...+. ..+.|+.+..++.+|..+.+. .+.||||||||.|++.....+..... +.|...+ .+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----~~Lk~~l------~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAG----NMLKPAL------ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHH----HHhchhh------hcCceEE
Confidence 887765 357788889999999998764 58999999999998644332222222 2222111 2367999
Q ss_pred EEecCCC-----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-----ChhcHHHHHHHcCCCcH
Q 001227 961 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 961 IaTTN~p-----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-----~d~dl~~LA~~TeGysg 1023 (1119)
|++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+..+.... .+..+..++..+.+|..
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 9999865 468999999995 68899999999999999887764432 45567777888877743
No 95
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.9e-12 Score=150.05 Aligned_cols=185 Identities=21% Similarity=0.253 Sum_probs=131.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999887752 2234568999999999999999999998642
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
++.++.+. ......++.+.+.+... ...|++|||+|.+- ....+.++
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLL 140 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALL 140 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHH
Confidence 22222111 01223456666554422 23699999999882 11233445
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l-~~d~dl~~LA~~TeGysg 1023 (1119)
..++.. +..+.+|.+|+.++.+.+++++|+ ..+.+..|+.++..++++..++..+. .++..++.++..+.| +.
T Consensus 141 k~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEEP----PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhcC----CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 444432 345677777787888999999998 67899999999999999998888664 355667888888877 55
Q ss_pred HHHHHHHHHHH
Q 001227 1024 SDLKNLCVTAA 1034 (1119)
Q Consensus 1024 ~DL~~L~~~Aa 1034 (1119)
+++.++++.++
T Consensus 215 R~al~~l~~~~ 225 (363)
T PRK14961 215 RDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 96
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.4e-12 Score=155.43 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=128.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 878 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 878 (1119)
..+|++++|++.+++.|...+.. .+.+.++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 46899999999999988887652 234467999999999999999999999865
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 879 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 879 ----------~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
.++.++.+. ..+-..++.+...+... ...||||||+|.|. ....+.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHH
Confidence 344554432 11223455555555422 24699999999882 11233444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++. .+..+++|++|+.+..+.+++++|+ ..+.+..++.++...+++..+...++. ++..++.|+..+.|-.+
T Consensus 139 k~LE~----p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR 213 (472)
T PRK14962 139 KTLEE----PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLR 213 (472)
T ss_pred HHHHh----CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 44443 2245777777777789999999999 588999999999999999988775543 55567888888876544
Q ss_pred HHHHHHHHH
Q 001227 1024 SDLKNLCVT 1032 (1119)
Q Consensus 1024 ~DL~~L~~~ 1032 (1119)
. +.++++.
T Consensus 214 ~-aln~Le~ 221 (472)
T PRK14962 214 D-ALTMLEQ 221 (472)
T ss_pred H-HHHHHHH
Confidence 3 3333333
No 97
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.47 E-value=1.3e-13 Score=170.24 Aligned_cols=126 Identities=17% Similarity=0.334 Sum_probs=99.5
Q ss_pred HHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCCC--CEEEEeeccCCCcccccCCCC
Q 001227 559 NELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHPG 625 (1119)
Q Consensus 559 ~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~---~~~~~~l~~~L~~L~g--~vvvIgs~~~~d~~k~k~~~~ 625 (1119)
..+|+.+.. ..|.||||||+|.+..+ + .+..+.+-..++.+.+ .|||||+||
T Consensus 234 ~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN------------ 298 (644)
T PRK10733 234 RDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN------------ 298 (644)
T ss_pred HHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecC------------
Confidence 445555544 68999999999996431 1 1234444444555543 799999999
Q ss_pred CceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccc
Q 001227 626 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 703 (1119)
Q Consensus 626 ~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~ 703 (1119)
+||.+|+ |++| ||++++++++||..+|..
T Consensus 299 ------------------~p~~lD~-------------------------------Al~RpgRfdr~i~v~~Pd~~~R~~ 329 (644)
T PRK10733 299 ------------------RPDVLDP-------------------------------ALLRPGRFDRQVVVGLPDVRGREQ 329 (644)
T ss_pred ------------------ChhhcCH-------------------------------HHhCCcccceEEEcCCCCHHHHHH
Confidence 6677776 9998 999999999999999999
Q ss_pred hhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhh
Q 001227 704 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 704 Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r 750 (1119)
|++.|. ...++ .++++..||..|.||+|+||+.+|++|+..|...
T Consensus 330 Il~~~~--~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 330 ILKVHM--RRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred HHHHHh--hcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999995 44445 6788999999999999999999999999998863
No 98
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.47 E-value=2.3e-12 Score=151.79 Aligned_cols=180 Identities=24% Similarity=0.427 Sum_probs=126.6
Q ss_pred CCcccccCcHHHHHH---HHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 814 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~---L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+|++++|++.+... |.+.+.. ....++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 578999999998666 7776642 123489999999999999999999999999999987542
Q ss_pred ccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec--
Q 001227 891 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 964 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTT-- 964 (1119)
....++.++..+.. ....||||||||.+. ...+ +.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----~~~q-------~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----KAQQ-------DALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----HHHH-------HHHHHHhhc------CcEEEEEeCCC
Confidence 22345556665532 245899999999872 1111 223333322 346666655
Q ss_pred CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc--cc--CChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 001227 965 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--EL--ASDVDLEGIANMADGYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 965 N~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~--~l--~~d~dl~~LA~~TeGysg~DL~~L~~~Aa 1034 (1119)
|....+++++++|| ..+.+..++.++...+++..+... .+ .++..++.++..+.| ..+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44568999999999 788999999999999999887652 11 244557788888765 4455556666554
No 99
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.6e-12 Score=161.19 Aligned_cols=185 Identities=22% Similarity=0.240 Sum_probs=131.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 880 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~f------------ 880 (1119)
..+|++|+|++.+++.|+..+.. .+.+..+||+||||||||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 46899999999999999987762 22345579999999999999999999997641
Q ss_pred ------------EEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 881 ------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 881 ------------i~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
+.++... ......++.+...+.. ....|+||||+|.|- ...++.|+
T Consensus 79 C~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALL 140 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALL 140 (944)
T ss_pred HHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHH
Confidence 1111110 0122345555544432 234699999999882 23445555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..|+. .+..+++|++|+.+..|.+.+++|+ .++.|..++.++..++|+..+..+.+. .+..+..|+..+.|..
T Consensus 141 KtLEE----PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~- 214 (944)
T PRK14949 141 KTLEE----PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSM- 214 (944)
T ss_pred HHHhc----cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-
Confidence 55554 2356778888888888999999998 789999999999999999988776543 4556788888888754
Q ss_pred HHHHHHHHHHH
Q 001227 1024 SDLKNLCVTAA 1034 (1119)
Q Consensus 1024 ~DL~~L~~~Aa 1034 (1119)
+++.+++..+.
T Consensus 215 R~ALnLLdQal 225 (944)
T PRK14949 215 RDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHH
Confidence 45556655443
No 100
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=2.1e-12 Score=153.24 Aligned_cols=215 Identities=16% Similarity=0.244 Sum_probs=135.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 928 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 928 (1119)
.++++||||+|+|||+|++++++++ +..++++++..+...+.......-...|...++ ...+|+||||+.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999876 688888887665443222111111123443333 45799999999874322
Q ss_pred CCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhc
Q 001227 929 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKE 1003 (1119)
Q Consensus 929 s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k~ 1003 (1119)
..++....+++.+... ...+|++++..|. .+++.+++||. ..+.+..|+.++|..|++..+...
T Consensus 219 --~~qeelf~l~N~l~~~---------~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 219 --ATQEEFFHTFNSLHTE---------GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred --hhHHHHHHHHHHHHHC---------CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 2344455555555421 2345555555453 56789999995 678889999999999999998876
Q ss_pred ccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHH
Q 001227 1004 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH-CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHE 1081 (1119)
Q Consensus 1004 ~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~-~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~ 1081 (1119)
++. ++..++.|+....+ +.++|...++..+. .+..++ ..+++++++.+.++.
T Consensus 288 ~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~-------------------------~~~~i~~~~~~~~l~ 341 (445)
T PRK12422 288 SIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL-------------------------SHQLLYVDDIKALLH 341 (445)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh-------------------------hCCCCCHHHHHHHHH
Confidence 543 45556667777664 34455544444322 122221 124688999999888
Q ss_pred Hhccccc-cccccchhhhHHHHHhc
Q 001227 1082 QVCASVS-SESTNMNELLQWNELYG 1105 (1119)
Q Consensus 1082 kv~pS~s-~e~~~~~~~v~W~DigG 1105 (1119)
.+..... ...+...-...|.+.||
T Consensus 342 ~~~~~~~~~~~t~~~I~~~Va~~~~ 366 (445)
T PRK12422 342 DVLEAAESVRLTPSKIIRAVAQYYG 366 (445)
T ss_pred HhhhcccCCCCCHHHHHHHHHHHhC
Confidence 7633221 12333445567888888
No 101
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.7e-12 Score=157.02 Aligned_cols=185 Identities=23% Similarity=0.242 Sum_probs=133.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 878 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 878 (1119)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 46899999999999999998762 234467899999999999999999999865
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 879 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 879 ----------~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
.++.++.++- ..-..++.+...+.. .+..|+||||+|.|- ....+.|+
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALL 139 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALL 139 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHH
Confidence 2344443221 123345555554432 234699999999882 11334455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++.. +..+.+|++|+.+..+...+++|+ .++.|..++.++..+.++.++.++++. ++..+..|+..+.| +.
T Consensus 140 KtLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555442 355677778888888889999999 688999999999999999999887654 55567888888877 55
Q ss_pred HHHHHHHHHHH
Q 001227 1024 SDLKNLCVTAA 1034 (1119)
Q Consensus 1024 ~DL~~L~~~Aa 1034 (1119)
+++.+++..+.
T Consensus 214 RdALnLLDQaI 224 (702)
T PRK14960 214 RDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHH
Confidence 56666655544
No 102
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.45 E-value=6.6e-12 Score=144.80 Aligned_cols=202 Identities=18% Similarity=0.214 Sum_probs=128.5
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecCc
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 887 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg---------~~fi~V~~s~ 887 (1119)
+++.|.++.++.|...+...+. ...+.+++|+||||||||++++++++++. +.+++++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~----------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR----------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4789999999999887763221 12335799999999999999999987652 6788999865
Q ss_pred cccc----------cc--c--------chHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhh
Q 001227 888 ITSK----------WF--G--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 946 (1119)
Q Consensus 888 L~s~----------~~--G--------~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ 946 (1119)
..+. .. + ...+....++..... ..+.||+|||+|.|.... + .++..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~----~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----D----DLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----c----HHHHhHhcc
Confidence 3221 10 1 112234445554433 346799999999996211 1 133333322
Q ss_pred ccCCcccCCccEEEEEecCCCC---CCcHHHHhccc-cccccCCCCHHHHHHHHHHHHhh---cccCChhcHHHH---HH
Q 001227 947 WDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGI---AN 1016 (1119)
Q Consensus 947 ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~-~~I~v~lPd~eeR~eILk~ll~k---~~l~~d~dl~~L---A~ 1016 (1119)
... ......++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+.. ....++..++.+ +.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111235788999998875 57788888885 57899999999999999998863 111223323333 34
Q ss_pred HcCCCcHHHHHHHHHHHHhhhHH
Q 001227 1017 MADGYSGSDLKNLCVTAAHCPIR 1039 (1119)
Q Consensus 1017 ~TeGysg~DL~~L~~~Aa~~air 1039 (1119)
.+.|... ...++|..|+..+..
T Consensus 235 ~~~Gd~R-~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 235 QEHGDAR-KAIDLLRVAGEIAER 256 (365)
T ss_pred HhcCCHH-HHHHHHHHHHHHHHH
Confidence 4456544 445567777665544
No 103
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.45 E-value=7.9e-13 Score=153.07 Aligned_cols=179 Identities=24% Similarity=0.372 Sum_probs=128.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccc-c
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 895 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s-~~~G-~ 895 (1119)
.|+|++++++.+...+.....+..+.....-..++++|||+||||||||++|+++|..++.+|+.+++..+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 3899999999998877654333322111111234589999999999999999999999999999999987763 6777 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 001227 896 GEKYVKAVFSLAS------------------------------------------------------------------- 908 (1119)
Q Consensus 896 ~e~~I~~lF~~A~------------------------------------------------------------------- 908 (1119)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5666666665550
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 001227 909 ------------------------------------------------------------------------KIAPSVVF 916 (1119)
Q Consensus 909 ------------------------------------------------------------------------k~~PsILf 916 (1119)
..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 12347999
Q ss_pred EccccccccCCCCCchhHHHHHHHHhhhhhccCCcc------cCCccEEEEEec----CCCCCCcHHHHhccccccccCC
Q 001227 917 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNL 986 (1119)
Q Consensus 917 IDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~v~l 986 (1119)
|||||.++.+..+.+....-.-+.+.|+..++|-.. -+..++++|++. ..|.+|-|.|.-||+.++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 999999986542211111122356667777766321 123678999886 3577888999999999999999
Q ss_pred CCHHHHHHHH
Q 001227 987 PDAPNREKII 996 (1119)
Q Consensus 987 Pd~eeR~eIL 996 (1119)
++.++-..||
T Consensus 333 L~~edL~rIL 342 (441)
T TIGR00390 333 LTTDDFERIL 342 (441)
T ss_pred CCHHHHHHHh
Confidence 9999988887
No 104
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.4e-12 Score=157.46 Aligned_cols=184 Identities=23% Similarity=0.275 Sum_probs=132.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++|+|++.+++.|...+.. .+-+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 46899999999999999987763 2233558999999999999999999998662
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
++.++... ......++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALL 140 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALL 140 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHH
Confidence 23333221 0122345555544432 234699999999882 22345555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++. .+..+.+|.+|+.+..|.+.+++|+ ..+.|..++.++-...|+..+..+++. ++..+..|+..++|..+
T Consensus 141 KtLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred HHHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 55554 3356788888888899999999998 789999999999999999988776654 44557788888888554
Q ss_pred HHHHHHHHHH
Q 001227 1024 SDLKNLCVTA 1033 (1119)
Q Consensus 1024 ~DL~~L~~~A 1033 (1119)
+..+++..|
T Consensus 216 -~Al~lldqa 224 (647)
T PRK07994 216 -DALSLTDQA 224 (647)
T ss_pred -HHHHHHHHH
Confidence 444555444
No 105
>PRK04195 replication factor C large subunit; Provisional
Probab=99.44 E-value=2e-12 Score=155.20 Aligned_cols=188 Identities=25% Similarity=0.366 Sum_probs=132.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
..+|++++|++++++.|..++.... + ..+++++||+||||+|||++|+++|++++++++.+++++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 4689999999999999999886311 1 234678999999999999999999999999999999876432
Q ss_pred ccchHHHHHHHHHHHHh------cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001227 893 FGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 966 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k------~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~ 966 (1119)
...+..+...+.. ..+.||+|||+|.|..... ... .+.++..++. .+..+|+++|.
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~~----~~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RGG----ARAILELIKK------AKQPIILTAND 139 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hhH----HHHHHHHHHc------CCCCEEEeccC
Confidence 1233333333322 2467999999999853211 111 1222222221 22346667888
Q ss_pred CCCCcH-HHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHH
Q 001227 967 PFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1031 (1119)
Q Consensus 967 p~~Ld~-aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~ 1031 (1119)
+..+.. .+++|+ ..+.|+.|+..+...+++.++...++. ++..++.|+..+.|.....+..|..
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~ 205 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQA 205 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888877 566566 679999999999999999999876653 5566888998887755555544433
No 106
>PLN03025 replication factor C subunit; Provisional
Probab=99.44 E-value=2.7e-12 Score=146.29 Aligned_cols=181 Identities=23% Similarity=0.242 Sum_probs=124.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 887 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg-----~~fi~V~~s~ 887 (1119)
..+|++++|++++.+.|+.++.. . ..+++||+||||||||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 46899999999999999887652 1 124799999999999999999999972 2466666654
Q ss_pred cccccccchHHHHHHHHHHH-Hh------cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001227 888 ITSKWFGEGEKYVKAVFSLA-SK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 960 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A-~k------~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlV 960 (1119)
..+ ...++...... .. ....||+|||+|.|. ...+..+.+++ +.. .....+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~aL~~~l-------E~~----~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQALRRTM-------EIY----SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHHHHHHH-------hcc----cCCceE
Confidence 321 11233332221 11 235799999999983 22233333222 221 133456
Q ss_pred EEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHH
Q 001227 961 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1031 (1119)
Q Consensus 961 IaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~ 1031 (1119)
|.+||....+.+++++|+ ..+.|..|+.++....++..+.++++. ++..++.++..+.|-.. .+.+.++
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR-~aln~Lq 202 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMR-QALNNLQ 202 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHH
Confidence 778888888999999998 678999999999999999998886654 56668888888776443 3333334
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.9e-12 Score=154.25 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=134.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 46899999999999999998863 2334568999999999999999999998653
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
+++++.+. ...-..++.+.+.+... ...|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLL 140 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALL 140 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHH
Confidence 44444332 11233455555544321 23699999999882 12334555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-.+.++.++.++++. ++..+..++..+.| +.
T Consensus 141 k~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 555542 355777777788888988999998 678899999999889999888887654 45557788888876 56
Q ss_pred HHHHHHHHHHHh
Q 001227 1024 SDLKNLCVTAAH 1035 (1119)
Q Consensus 1024 ~DL~~L~~~Aa~ 1035 (1119)
+++.+++..+..
T Consensus 215 R~al~lLdq~ia 226 (509)
T PRK14958 215 RDALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHHh
Confidence 677777765543
No 108
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=5.1e-12 Score=151.55 Aligned_cols=185 Identities=20% Similarity=0.257 Sum_probs=134.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|+|++|++.+.+.|...+.. .+.+.++||+||+|||||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 46899999999999999887652 2345689999999999999999999998652
Q ss_pred ---------------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHH
Q 001227 880 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMK 940 (1119)
Q Consensus 880 ---------------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll 940 (1119)
++.++... ......++.+++.+... ...|+||||+|.|. ...+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 12222111 12345677777776533 24699999999882 1223
Q ss_pred HhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcC
Q 001227 941 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1019 (1119)
Q Consensus 941 ~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~Te 1019 (1119)
+.|+..++. .+..+++|++|+.++.+.+++++|+ ..+.+..++.++...+++..+++++.. ++..++.|+..++
T Consensus 146 naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 444544443 2356777777888888999999999 678899999999999999999887754 4455788898888
Q ss_pred CCcHHHHHHHHHHHH
Q 001227 1020 GYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 1020 Gysg~DL~~L~~~Aa 1034 (1119)
| +.+++.++++.++
T Consensus 221 G-slR~al~~Ldkai 234 (507)
T PRK06645 221 G-SARDAVSILDQAA 234 (507)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 5556666665553
No 109
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=9.2e-12 Score=145.19 Aligned_cols=202 Identities=16% Similarity=0.203 Sum_probs=129.5
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccc
Q 001227 816 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS 890 (1119)
Q Consensus 816 fddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s 890 (1119)
.+.+.|.++..++|...+...+. ...+.+++|+||||||||++++.+++++ ++.+++++|....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 35688999999999887753221 1233579999999999999999999877 57899999864321
Q ss_pred ----------cccc--------chHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCc
Q 001227 891 ----------KWFG--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 951 (1119)
Q Consensus 891 ----------~~~G--------~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~ 951 (1119)
...+ ..+..+..++..... ..+.||+|||+|.+.... . . ..+..++..+....
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~---~----~~l~~l~~~~~~~~ 170 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G---N----DVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C---c----hHHHHHHHhhhccC
Confidence 1111 112334444444433 345799999999986211 1 1 23344444443332
Q ss_pred ccCCccEEEEEecCCC---CCCcHHHHhccc-cccccCCCCHHHHHHHHHHHHhhc---ccCChhcHHHHHHHcCCCc--
Q 001227 952 TKDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYS-- 1022 (1119)
Q Consensus 952 ~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~v~lPd~eeR~eILk~ll~k~---~l~~d~dl~~LA~~TeGys-- 1022 (1119)
..++.+|+++|.. +.+++.+.+||. ..+.+++++.++..+|++..+... ...++..++.++..+.+.+
T Consensus 171 ---~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 ---GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred ---CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2368888888765 357788888774 568999999999999999887642 1234455677777774322
Q ss_pred HHHHHHHHHHHHhhhH
Q 001227 1023 GSDLKNLCVTAAHCPI 1038 (1119)
Q Consensus 1023 g~DL~~L~~~Aa~~ai 1038 (1119)
.+.+..+|..|+..|.
T Consensus 248 ~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 248 ARVAIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2334456666655443
No 110
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.42 E-value=4.6e-13 Score=155.18 Aligned_cols=128 Identities=23% Similarity=0.380 Sum_probs=96.4
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------Chh---hHHHHHHHHhcC--CCCEEEEeeccCCCcccccCC
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NND---AYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSH 623 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~~~---~~~~l~~~L~~L--~g~vvvIgs~~~~d~~k~k~~ 623 (1119)
.+..+|+.+.. ..|.||||||+|.+... ..+ ....+-..++.+ .++|+||+++|
T Consensus 203 ~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn---------- 269 (364)
T TIGR01242 203 LVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN---------- 269 (364)
T ss_pred HHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecC----------
Confidence 34556666655 78999999999996542 111 222233334444 35899999999
Q ss_pred CCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcc
Q 001227 624 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 701 (1119)
Q Consensus 624 ~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR 701 (1119)
.|+.+|+ +++| ||++.+++++|+...|
T Consensus 270 --------------------~~~~ld~-------------------------------al~r~grfd~~i~v~~P~~~~r 298 (364)
T TIGR01242 270 --------------------RPDILDP-------------------------------ALLRPGRFDRIIEVPLPDFEGR 298 (364)
T ss_pred --------------------ChhhCCh-------------------------------hhcCcccCceEEEeCCcCHHHH
Confidence 3444554 7777 8999999999999999
Q ss_pred cchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhh
Q 001227 702 SNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 702 ~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r 750 (1119)
.+|+++|+. ...+ ++++++.|+..|.||+|+||+.+|++|...|+.+
T Consensus 299 ~~Il~~~~~--~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 299 LEILKIHTR--KMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHh--cCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999974 2233 4578999999999999999999999999999874
No 111
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.6e-13 Score=141.94 Aligned_cols=216 Identities=25% Similarity=0.343 Sum_probs=159.8
Q ss_pred CCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001227 313 GPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 392 (1119)
Q Consensus 313 ~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~ 392 (1119)
+-++-+||+...--. +-.|+-..+|.-..|-|.++-+.. .+. .-+.+||.||||| ...|||||.||+--|.++=
T Consensus 146 ~~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qi-gid-pprgvllygppg~--gktml~kava~~t~a~fir 219 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQI-GID-PPRGVLLYGPPGT--GKTMLAKAVANHTTAAFIR 219 (408)
T ss_pred CCCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHh-CCC-CCcceEEeCCCCC--cHHHHHHHHhhccchheee
Confidence 345667787777666 888999999999999999883321 233 3478999999999 7999999999998887654
Q ss_pred EeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCc
Q 001227 393 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 472 (1119)
Q Consensus 393 lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdr 472 (1119)
+-.+ | .
T Consensus 220 vvgs----------e----------------------------------------------------------------f 225 (408)
T KOG0727|consen 220 VVGS----------E----------------------------------------------------------------F 225 (408)
T ss_pred eccH----------H----------------------------------------------------------------H
Confidence 4321 1 0
Q ss_pred e-eeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcc
Q 001227 473 V-KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGD 551 (1119)
Q Consensus 473 v-~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~ 551 (1119)
| ||.|..
T Consensus 226 vqkylgeg------------------------------------------------------------------------ 233 (408)
T KOG0727|consen 226 VQKYLGEG------------------------------------------------------------------------ 233 (408)
T ss_pred HHHHhccC------------------------------------------------------------------------
Confidence 1 343320
Q ss_pred hhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-------c-ChhhHHHHHHHHhcCCC-----CEEEEeeccCCCcc
Q 001227 552 EVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-------G-NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSR 618 (1119)
Q Consensus 552 ~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~-------~-~~~~~~~l~~~L~~L~g-----~vvvIgs~~~~d~~ 618 (1119)
-+.+..+|.++.+ ..|.|||||+||.+-. | ..+.-..+-+.|..+.| ||-||.|||+.|.
T Consensus 234 ---prmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt- 306 (408)
T KOG0727|consen 234 ---PRMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT- 306 (408)
T ss_pred ---cHHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc-
Confidence 0134556777777 8999999999999543 1 24444445556666655 9999999996554
Q ss_pred cccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhh
Q 001227 619 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 696 (1119)
Q Consensus 619 k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lp 696 (1119)
+|| |||| |++|.+||+||
T Consensus 307 -----------------------------ldp-------------------------------allrpgrldrkiefplp 326 (408)
T KOG0727|consen 307 -----------------------------LDP-------------------------------ALLRPGRLDRKIEFPLP 326 (408)
T ss_pred -----------------------------cCH-------------------------------hhcCCccccccccCCCC
Confidence 454 9999 99999999999
Q ss_pred hhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhh
Q 001227 697 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 749 (1119)
Q Consensus 697 d~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~ 749 (1119)
|..-++=++.-.| ..-.+ +++||+++.......+||+|.++|.+|-.+|..
T Consensus 327 drrqkrlvf~tit--skm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 327 DRRQKRLVFSTIT--SKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred chhhhhhhHHhhh--hcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH
Confidence 9766655554443 22234 789999999999999999999999999999886
No 112
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.41 E-value=4.4e-12 Score=148.85 Aligned_cols=226 Identities=22% Similarity=0.314 Sum_probs=135.3
Q ss_pred CCccc-ccCcHHHHHHHHHHHhcccCChhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 814 VTFDD-IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 814 ~sfdd-I~G~e~ik~~L~e~v~~pL~~pelf~k--~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
..+++ |+|++.+++.|...+..++.+...... .....+..++||+||||||||++|+++|..++.||+.+++..+..
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 34444 899999999998777544333211100 012234568999999999999999999999999999999988753
Q ss_pred -ccccch-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCch-hH-HHHHHHHhhhhhccCCc---------cc
Q 001227 891 -KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGE-HE-AMRKMKNEFMVNWDGLR---------TK 953 (1119)
Q Consensus 891 -~~~G~~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~s~~~-~~-~l~~ll~~Ll~~ldgl~---------~k 953 (1119)
.|.|.. +..+..++..+ .+..++||||||||.+...+.++.. .. ....+.+.|+..|++-. ..
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 566664 33444444332 3456799999999999755332210 00 00123444555554321 11
Q ss_pred CCccEEEEEecCCCC----------------------------------------------------CCcHHHHhccccc
Q 001227 954 DKERVLVLAATNRPF----------------------------------------------------DLDEAVVRRLPRR 981 (1119)
Q Consensus 954 ~~~~VlVIaTTN~p~----------------------------------------------------~Ld~aLlrRF~~~ 981 (1119)
.....++|.|+|..+ -+.|+|+.|++.+
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~i 306 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVV 306 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCee
Confidence 123455666655411 0356777788888
Q ss_pred cccCCCCHHHHHHHHHH----HHhh-------cccC---ChhcHHHHHHH--cCCCcHHHHHHHHHHHHhhhHH
Q 001227 982 LMVNLPDAPNREKIIRV----ILAK-------EELA---SDVDLEGIANM--ADGYSGSDLKNLCVTAAHCPIR 1039 (1119)
Q Consensus 982 I~v~lPd~eeR~eILk~----ll~k-------~~l~---~d~dl~~LA~~--TeGysg~DL~~L~~~Aa~~air 1039 (1119)
+.|...+.++..+|+.. ++++ ..+. ++..++.|++. ..++-.+.|+.+++......+.
T Consensus 307 v~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 307 ATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 88888898888888862 3322 1111 33345556654 2344455555555555444443
No 113
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=5e-12 Score=150.63 Aligned_cols=186 Identities=21% Similarity=0.234 Sum_probs=137.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 878 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 878 (1119)
..+|+|++|++.+.+.|...+.. .+.+.++||+||+|+|||++|+.+|+.+.+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 46899999999999999887652 334568999999999999999999987632
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 879 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 879 ----------~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
.+++++.++- .+...++.+.+.+... ...|++|||+|.|- ...++.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHH
Confidence 3455554321 1234567776666433 24699999999882 12344555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++.. +..+.+|.+|+.+..+.+.+++|+ ..+.+..++.++..+.++..+.+++.. ++..++.|+..++| +.
T Consensus 138 K~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555542 355777778888888999999999 678999999999999999998887654 55667888888876 55
Q ss_pred HHHHHHHHHHHh
Q 001227 1024 SDLKNLCVTAAH 1035 (1119)
Q Consensus 1024 ~DL~~L~~~Aa~ 1035 (1119)
+++.+++..++.
T Consensus 212 R~alslLdqli~ 223 (491)
T PRK14964 212 RNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 114
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=4.6e-12 Score=148.03 Aligned_cols=187 Identities=16% Similarity=0.240 Sum_probs=126.9
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE--------------
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------- 880 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~f-------------- 880 (1119)
.|++|+|++.+++.|++.+..+...+..+ + .+.+..+||+||+|+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999998644322211 1 12356799999999999999999999875431
Q ss_pred ---------EEEecCccccccccchHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhc
Q 001227 881 ---------INISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 947 (1119)
Q Consensus 881 ---------i~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~l 947 (1119)
..+.... ....-..++.+++.+...+ ..|+||||+|.|- ....+.|+..+
T Consensus 79 ~~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~L 141 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAV 141 (394)
T ss_pred HhcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHh
Confidence 1111110 1112345778888776532 3699999999982 11224455555
Q ss_pred cCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHH
Q 001227 948 DGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 1027 (1119)
Q Consensus 948 dgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~ 1027 (1119)
+.. +.++++|.+|+.++.+.+++++|+ ..+.|+.|+.++..+++.. ...+ ++.....++..+.|..+..+.
T Consensus 142 Eep----~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~-~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP----PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGV-DPETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC----CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 542 234455555555899999999999 6899999999988777753 2233 345567889999998887766
Q ss_pred HHHH
Q 001227 1028 NLCV 1031 (1119)
Q Consensus 1028 ~L~~ 1031 (1119)
.+..
T Consensus 213 l~~~ 216 (394)
T PRK07940 213 LATD 216 (394)
T ss_pred HhcC
Confidence 5443
No 115
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.40 E-value=7.7e-13 Score=142.27 Aligned_cols=128 Identities=22% Similarity=0.351 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------c-ChhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCC
Q 001227 556 LAINELFEVALNESKSSPLIVFVKDIEKSLT--------G-NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 624 (1119)
Q Consensus 556 ~~~~~l~ev~~~esk~~p~Ilf~~die~~l~--------~-~~~~~~~l~~~L~~L~--g~vvvIgs~~~~d~~k~k~~~ 624 (1119)
..|.+||+-+.. ..|+|+|||+.|.+-. | =.++.+.|...|+.+- .+|+-|||||
T Consensus 197 r~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN----------- 262 (368)
T COG1223 197 RRIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN----------- 262 (368)
T ss_pred HHHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC-----------
Confidence 467888988877 9999999999998422 2 2456666666666553 3899999999
Q ss_pred CCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHHhhhhhhhhcccch
Q 001227 625 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 704 (1119)
Q Consensus 625 ~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~e~~Lpd~~gR~~I 704 (1119)
.|+-+|+ |.+.||+.++||.||+.+-|..|
T Consensus 263 -------------------~p~~LD~-------------------------------aiRsRFEeEIEF~LP~~eEr~~i 292 (368)
T COG1223 263 -------------------RPELLDP-------------------------------AIRSRFEEEIEFKLPNDEERLEI 292 (368)
T ss_pred -------------------ChhhcCH-------------------------------HHHhhhhheeeeeCCChHHHHHH
Confidence 4555555 88889999999999998888877
Q ss_pred hHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHH-HHhhhhhhhhh
Q 001227 705 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEK-IVGWALSHHFM 749 (1119)
Q Consensus 705 l~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~-Lv~~A~s~al~ 749 (1119)
+..- ...-++ -+.+++.++.+|+|++|-||.+ ++..|..-|+.
T Consensus 293 le~y--~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 293 LEYY--AKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred HHHH--HHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 7765 444455 6778999999999999999976 55666655654
No 116
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=7.9e-12 Score=152.53 Aligned_cols=186 Identities=23% Similarity=0.276 Sum_probs=135.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 46899999999999999998763 2345679999999999999999999988543
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
++.++.+. ......++.++..+.. ....||||||+|.|- ....+.|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHH
Confidence 12222211 1223456666665432 234799999999872 12334455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++.. +..+.+|++|+.+..+...+++|| ..+.|..++.++...+++.++.++++. ++..+..|+..+.| +.
T Consensus 141 KtLEEP----p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEEP----PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHhC----CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 555442 355778888888889999999998 678889999999999999999887654 45557888888876 56
Q ss_pred HHHHHHHHHHHh
Q 001227 1024 SDLKNLCVTAAH 1035 (1119)
Q Consensus 1024 ~DL~~L~~~Aa~ 1035 (1119)
+++.+++..+..
T Consensus 215 RdAlnLLDqaia 226 (709)
T PRK08691 215 RDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHH
Confidence 677777766554
No 117
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.39 E-value=4.2e-12 Score=147.20 Aligned_cols=179 Identities=22% Similarity=0.360 Sum_probs=128.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccc-c
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 895 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s-~~~G-~ 895 (1119)
.|+|++++++.+...+....++..+........++.++||+||||+|||++|+++|+.++.+|+.+++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999998877643332222111111123578999999999999999999999999999999987774 5777 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 001227 896 GEKYVKAVFSLAS------------------------------------------------------------------- 908 (1119)
Q Consensus 896 ~e~~I~~lF~~A~------------------------------------------------------------------- 908 (1119)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4566666666661
Q ss_pred ---------------------------------------------------------------------h--cCCeEEEE
Q 001227 909 ---------------------------------------------------------------------K--IAPSVVFV 917 (1119)
Q Consensus 909 ---------------------------------------------------------------------k--~~PsILfI 917 (1119)
. ..-+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13479999
Q ss_pred ccccccccCCCCCchhHHHHHHHHhhhhhccCCcc------cCCccEEEEEec----CCCCCCcHHHHhccccccccCCC
Q 001227 918 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 987 (1119)
Q Consensus 918 DEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~v~lP 987 (1119)
||||.++....+.+......-+.+.|+..++|-.. -+..++++||+. ..|.+|-|.|..||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999986643322111122366677777776321 123678999886 45778889999999999999999
Q ss_pred CHHHHHHHH
Q 001227 988 DAPNREKII 996 (1119)
Q Consensus 988 d~eeR~eIL 996 (1119)
+.++-..||
T Consensus 336 ~~~dL~~IL 344 (443)
T PRK05201 336 TEEDFVRIL 344 (443)
T ss_pred CHHHHHHHh
Confidence 999988887
No 118
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.6e-11 Score=150.00 Aligned_cols=186 Identities=20% Similarity=0.245 Sum_probs=132.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 46899999999999999998763 2234568999999999999999999998652
Q ss_pred ----------------EEEEecCccccccccchHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHH
Q 001227 880 ----------------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKM 939 (1119)
Q Consensus 880 ----------------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~~~l~~l 939 (1119)
++.++... ......++.+.+.+...+ -.|++|||+|.|. ...
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a 140 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTA 140 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHH
Confidence 22222211 112334666665553322 3599999999882 122
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc
Q 001227 940 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1018 (1119)
Q Consensus 940 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~T 1018 (1119)
.+.|+..++. .+..+.+|.+|+.+..+...+++|+ ..+.|..++.++..+.++..+.++++. ++..+..|+..+
T Consensus 141 ~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4455555544 2356777777778888888999998 789999999999999999988887655 445578888888
Q ss_pred CCCcHHHHHHHHHHHHh
Q 001227 1019 DGYSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 1019 eGysg~DL~~L~~~Aa~ 1035 (1119)
+| +.+++.+++..+..
T Consensus 216 ~G-slR~al~lLdq~ia 231 (618)
T PRK14951 216 RG-SMRDALSLTDQAIA 231 (618)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 87 55666666655443
No 119
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=6.3e-12 Score=149.21 Aligned_cols=168 Identities=18% Similarity=0.286 Sum_probs=110.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 927 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 927 (1119)
.+++||||+|+|||+|++++++++ +..++++++.++...+.......-..-|...++..+.+|+|||++.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 469999999999999999999986 467888888776554332111101112333344467899999999885432
Q ss_pred CCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001227 928 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 928 ~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
..++.+..+++.+.. ....+||++...|.. +.+.+.+||. ..+.+..|+.+.|.+|++..+..
T Consensus 211 ---~~q~elf~~~n~l~~---------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 211 ---GVQTELFHTFNELHD---------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred ---HHHHHHHHHHHHHHH---------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 122333344444431 123455555566654 4567888884 46779999999999999999876
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 001227 1003 EELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1033 (1119)
Q Consensus 1003 ~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~A 1033 (1119)
..+. ++..++.||....| +.++|..++...
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 5443 55567888888765 455666555543
No 120
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.2e-12 Score=149.31 Aligned_cols=174 Identities=21% Similarity=0.341 Sum_probs=122.3
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc------
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------ 890 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s------ 890 (1119)
+|-.|++++|+.+.+++..-..+ + ....+-+.|+||||+|||++++.||+.++..|+.++..-+..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr------g--s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR------G--SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc------c--cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 46789999999999988642211 1 112234889999999999999999999999999998754322
Q ss_pred ---ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHH-----hhhhhccCCcccCCccEEEEE
Q 001227 891 ---KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLA 962 (1119)
Q Consensus 891 ---~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~-----~Ll~~ldgl~~k~~~~VlVIa 962 (1119)
.|+|.+...+-+......-.. -+++|||||.+.. ........++..++. .|+...-.++- +-.+|++||
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~N-PliLiDEvDKlG~-g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFic 559 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTEN-PLILIDEVDKLGS-GHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFIC 559 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCC-ceEEeehhhhhCC-CCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEE
Confidence 266766666666666665555 4888999999962 111122222222221 12211112211 236899999
Q ss_pred ecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001227 963 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 963 TTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
|+|..+.+++.++.|+ .+|.+.=+..+|..+|-+.++-.
T Consensus 560 TAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred eccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh
Confidence 9999999999999999 78899999999999999988743
No 121
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.37 E-value=2.1e-11 Score=140.00 Aligned_cols=186 Identities=26% Similarity=0.338 Sum_probs=131.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++++|++.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+.++
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999987752 2344679999999999999999999987432
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
++.++... ......++.++..+...+ ..||+|||+|.+- ....+.++
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 33333221 112334667777665432 3699999999872 12234455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++.. +..+++|.+|+.++.+.+++++|+ ..+.++.|+.++..++++..+++.++. ++..+..++..+.| +.
T Consensus 139 ~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 555442 345777778888888889999998 578999999999999999998876643 44557778888766 45
Q ss_pred HHHHHHHHHHHh
Q 001227 1024 SDLKNLCVTAAH 1035 (1119)
Q Consensus 1024 ~DL~~L~~~Aa~ 1035 (1119)
+.+.+.++.+..
T Consensus 213 ~~a~~~lekl~~ 224 (355)
T TIGR02397 213 RDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
No 122
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.1e-12 Score=154.77 Aligned_cols=172 Identities=23% Similarity=0.328 Sum_probs=125.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-------
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 890 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s------- 890 (1119)
|-.|++++|+.+.+++....... .+. ..=++|+||||+|||+|++.||+.++..|+.++..-+..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~------~~k--GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK------KLK--GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc------cCC--CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 56799999999999887422221 111 124899999999999999999999999999999854322
Q ss_pred --ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHH-----hhhhhccCCcccCCccEEEEEe
Q 001227 891 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLAA 963 (1119)
Q Consensus 891 --~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~-----~Ll~~ldgl~~k~~~~VlVIaT 963 (1119)
.|+|.....+-+-...|....| +++|||||.+... .......++..++. .|..+.-.+.- +-.+|++|+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEee
Confidence 2777777777777788877665 8889999999532 22222233333321 12211111111 2367999999
Q ss_pred cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHh
Q 001227 964 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1001 (1119)
Q Consensus 964 TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~ 1001 (1119)
+|..+.++..++.|. .+|.+.-++.+|..+|.+.++-
T Consensus 473 ANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 473 ANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999999 7899999999999999988763
No 123
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.37 E-value=1.6e-11 Score=139.77 Aligned_cols=187 Identities=20% Similarity=0.243 Sum_probs=122.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 887 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg-----~~fi~V~~s~ 887 (1119)
..+|++++|.+.+++.|.+++.. . ..+++||+||||||||++|+++++++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-------------~-~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-------------P-NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-------------C-CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 45799999999999999887752 1 123799999999999999999999883 3577888776
Q ss_pred ccccc-------------ccc-------hHHHHHHHHHHHHhc-----CCeEEEEccccccccCCCCCchhHHHHHHHHh
Q 001227 888 ITSKW-------------FGE-------GEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 942 (1119)
Q Consensus 888 L~s~~-------------~G~-------~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~ 942 (1119)
+.... .+. ....++.+....... .+.+|+|||+|.+- ...+. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~~~~-------~ 144 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----EDAQQ-------A 144 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HHHHH-------H
Confidence 53221 000 112233333333222 24699999999872 11122 2
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 001227 943 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1021 (1119)
Q Consensus 943 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGy 1021 (1119)
+...++... ....+|.+++.+..+.+.+.+|+ ..+.+.+|+.++..++++..+.+.++. ++..++.|+..+.|
T Consensus 145 L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 145 LRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred HHHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 222222221 22445556666667778888887 578899999999999999988876654 56667888888754
Q ss_pred cHHHHHHHHH
Q 001227 1022 SGSDLKNLCV 1031 (1119)
Q Consensus 1022 sg~DL~~L~~ 1031 (1119)
+.+++.+.++
T Consensus 219 dlr~l~~~l~ 228 (337)
T PRK12402 219 DLRKAILTLQ 228 (337)
T ss_pred CHHHHHHHHH
Confidence 3344444333
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.37 E-value=1.6e-11 Score=139.17 Aligned_cols=177 Identities=19% Similarity=0.216 Sum_probs=116.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
..+|++++|.+.+++.+...+.. ...+..+||+||||+|||++|++++++.+.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 46899999999999999988752 123345677999999999999999999999999999876 21
Q ss_pred ccchHHHHHHHHHHHH-hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 001227 893 FGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 971 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~-k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 971 (1119)
.......+........ ...+.||||||+|.+.. ...+. .+..+ ++.. ...+.+|++||.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----~~~~~----~L~~~---le~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----ADAQR----HLRSF---MEAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----HHHHH----HHHHH---HHhc----CCCceEEEEcCChhhch
Confidence 1111111222111111 12468999999998721 11111 22222 2221 24567888999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhh-------cccC-ChhcHHHHHHHcCCC
Q 001227 972 EAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EELA-SDVDLEGIANMADGY 1021 (1119)
Q Consensus 972 ~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k-------~~l~-~d~dl~~LA~~TeGy 1021 (1119)
+++++|| ..+.++.|+.+++.++++.++.. .+.. ++..+..++....|-
T Consensus 146 ~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d 202 (316)
T PHA02544 146 EPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPD 202 (316)
T ss_pred HHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC
Confidence 9999999 57889999999998887765433 2221 223346666655443
No 125
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.36 E-value=8.8e-12 Score=137.48 Aligned_cols=185 Identities=24% Similarity=0.332 Sum_probs=129.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------cEEEEecC
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA------NFINISMS 886 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~------~fi~V~~s 886 (1119)
..+|+++.|++.+.+.|...+.. +-..++|||||||||||+.|+++|+++.. .+.+.+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 46899999999999999997762 12358999999999999999999999865 23444555
Q ss_pred ccccccccchHHHHHHHHHHHHh---------cCC-eEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCc
Q 001227 887 SITSKWFGEGEKYVKAVFSLASK---------IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 956 (1119)
Q Consensus 887 ~L~s~~~G~~e~~I~~lF~~A~k---------~~P-sILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~ 956 (1119)
+..+..++. ..++ -|....- .+| .||+|||.|.|. ...+.++++++..+ ..
T Consensus 98 derGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq~aLrr~mE~~-----------s~ 158 (346)
T KOG0989|consen 98 DERGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQAALRRTMEDF-----------SR 158 (346)
T ss_pred ccccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh-----HHHHHHHHHHHhcc-----------cc
Confidence 544433221 1111 1222211 122 699999999983 33455555555432 25
Q ss_pred cEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHH
Q 001227 957 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1031 (1119)
Q Consensus 957 ~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~ 1031 (1119)
.+++|..||..+.+...+.+|+ ..+.|+....+.....|+.+..++++. ++..++.|+..++|--...+..|-.
T Consensus 159 ~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6889999999999999999998 467777777777788888888888776 4455788888888866555544433
No 126
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.7e-11 Score=147.90 Aligned_cols=185 Identities=23% Similarity=0.275 Sum_probs=128.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 878 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 878 (1119)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 36899999999999999987762 233456999999999999999999998854
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 879 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 879 ----------~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
.++.++...- .+...++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLL 140 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALL 140 (546)
T ss_pred HHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHH
Confidence 2333332110 112234555554432 234699999999882 12334455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++.. +..+.+|++|+.+..+.+.+++|+ ..+.|..++.++....++..+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555442 345667777777888888899999 789999999999999999988876654 45557788888866 44
Q ss_pred HHHHHHHHHHH
Q 001227 1024 SDLKNLCVTAA 1034 (1119)
Q Consensus 1024 ~DL~~L~~~Aa 1034 (1119)
+++.++++.++
T Consensus 215 R~alnlLek~i 225 (546)
T PRK14957 215 RDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 127
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2e-11 Score=148.79 Aligned_cols=184 Identities=25% Similarity=0.328 Sum_probs=132.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 878 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 878 (1119)
..+|++++|++.+.+.|...+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999998763 234466999999999999999999998753
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 879 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 879 ----------~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
+++.++.+. ..+...++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 234444321 12334566776665532 24699999999882 12344555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++.. +..+++|.+|+.++.+.+++++|+ ..+.|..|+.++....++..+.+.++. ++..+..++..+.| +.
T Consensus 141 KtLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555542 355777777778899999999998 578899999999999999998887654 44557788888877 44
Q ss_pred HHHHHHHHHH
Q 001227 1024 SDLKNLCVTA 1033 (1119)
Q Consensus 1024 ~DL~~L~~~A 1033 (1119)
++..+++..+
T Consensus 215 R~al~~Ldq~ 224 (559)
T PRK05563 215 RDALSILDQA 224 (559)
T ss_pred HHHHHHHHHH
Confidence 4544444433
No 128
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.35 E-value=3.8e-11 Score=129.11 Aligned_cols=185 Identities=19% Similarity=0.236 Sum_probs=118.0
Q ss_pred CCccccc--CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc
Q 001227 814 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 888 (1119)
Q Consensus 814 ~sfddI~--G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L 888 (1119)
.+|+++. +.....+.+++++. .....+++|+||+|||||++|+++++++ +.+++.++|..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 5677754 45667777777543 1234689999999999999999999876 578889998776
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 889 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 889 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.... ..++.... ...+|+|||+|.+-... ..++.+..+++... . ....+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~~----~-----~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRVR----E-----AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHHH----H-----cCCeEEEECCCChH
Confidence 5321 22333222 24699999999873110 11333333332221 1 12234444443443
Q ss_pred CCc---HHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001227 969 DLD---EAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 969 ~Ld---~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~ 1035 (1119)
.+. +.+.+|+. ..+.++.|+.+++..+++.++.+..+. ++..++.|+... +.+.+++.++++.+..
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDR 207 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHH
Confidence 332 77888873 678899999999999999887665443 455577777753 4577788888776553
No 129
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.35 E-value=6.2e-11 Score=128.32 Aligned_cols=178 Identities=19% Similarity=0.215 Sum_probs=113.2
Q ss_pred CCCccccc--CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001227 813 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 887 (1119)
Q Consensus 813 ~~sfddI~--G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~ 887 (1119)
..+|+++. +.+.+...+.++... .....+++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 46788854 345566666554431 1233579999999999999999999876 67888888766
Q ss_pred cccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCcc-EEEEEecCC
Q 001227 888 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 966 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~-VlVIaTTN~ 966 (1119)
+... + .......+|+|||+|.+- ...+..+..+++.+. .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l~-----~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERLD-----DAQQIALFNLFNRVR---------AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhcC-----chHHHHHHHHHHHHH---------HcCCcEEEEeCCCC
Confidence 4321 1 112235799999999872 222333333333321 1123 344444433
Q ss_pred C--CCCcHHHHhcc--ccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 001227 967 P--FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1032 (1119)
Q Consensus 967 p--~~Ld~aLlrRF--~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~ 1032 (1119)
+ ..+.+.+.+|| ...+.+++|+.+++..+++.+.....+. ++..++.|+....| +.+++.++++.
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 3 23567888887 4678899999988889998877665443 45557777775444 56676666654
No 130
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.34 E-value=2.9e-11 Score=150.51 Aligned_cols=182 Identities=20% Similarity=0.358 Sum_probs=123.4
Q ss_pred CCCcccccCcHHHHH---HHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001227 813 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 889 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~---~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~ 889 (1119)
..+|++++|++.+.. .|.+.+.. ....++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 368999999999885 45554431 123589999999999999999999999999998887531
Q ss_pred cccccchHHHHHHHHHHHH-----hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 001227 890 SKWFGEGEKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 964 (1119)
Q Consensus 890 s~~~G~~e~~I~~lF~~A~-----k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTT 964 (1119)
..+.++.++..+. .....+|||||||.|- ...+. .|+..++ ...+++|++|
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----~~qQd-------aLL~~lE------~g~IiLI~aT 144 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----KAQQD-------ALLPWVE------NGTITLIGAT 144 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----HHHHH-------HHHHHhc------CceEEEEEec
Confidence 1122333333331 1235799999999882 11222 2222222 2456777665
Q ss_pred --CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh-------ccc-CChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 001227 965 --NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EEL-ASDVDLEGIANMADGYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 965 --N~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k-------~~l-~~d~dl~~LA~~TeGysg~DL~~L~~~Aa 1034 (1119)
|....+++++++|+ ..+.++.++.+++..+++.++.. ..+ .++..++.|+..+.| ..+.+.++++.|+
T Consensus 145 Tenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 145 TENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33467889999997 67899999999999999998872 222 245557888888755 4566666666655
Q ss_pred h
Q 001227 1035 H 1035 (1119)
Q Consensus 1035 ~ 1035 (1119)
.
T Consensus 223 ~ 223 (725)
T PRK13341 223 E 223 (725)
T ss_pred H
Confidence 3
No 131
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.8e-11 Score=147.16 Aligned_cols=181 Identities=21% Similarity=0.260 Sum_probs=127.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++|+|++.+++.|..++.. .+-+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 46899999999999999998762 1224589999999999999999999998653
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
++.++...- ..-..++.+...+. .....||||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 333432210 11223333332222 2234799999999882 12334555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l-~~d~dl~~LA~~TeGysg 1023 (1119)
..++.. ...+++|++|+.+..+.+.+++|+ ..+.|..++.++..++|+..+.++.+ .++..++.|+..+.|...
T Consensus 141 k~LEEP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEEP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhcc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 555442 246788888888888989999998 57899999999999999988887665 356668888888887655
Q ss_pred HHHHHH
Q 001227 1024 SDLKNL 1029 (1119)
Q Consensus 1024 ~DL~~L 1029 (1119)
..+..|
T Consensus 216 ~Al~lL 221 (624)
T PRK14959 216 DSMSLL 221 (624)
T ss_pred HHHHHH
Confidence 444443
No 132
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.34 E-value=2.5e-11 Score=131.94 Aligned_cols=189 Identities=24% Similarity=0.338 Sum_probs=135.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 889 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~ 889 (1119)
.+.+++++|++.+++.|.+.... |.+ ..|..++||+|++|||||++++++..+. |..+|.|...++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~---G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQ---GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHc---CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 46899999999999999987764 333 3477899999999999999999999876 7788888765543
Q ss_pred cccccchHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 890 SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 890 s~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.+..++...+.. .+-|||+|++- | ...+. -...|...++|-....+.+|+|.||+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d~-----~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F----EEGDT-----EYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C----CCCcH-----HHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 345566665533 35799999974 2 11111 124556667776666679999999999743
Q ss_pred CCcH-----------------------HHHhccccccccCCCCHHHHHHHHHHHHhhcccCCh-hcH----HHHHHHcCC
Q 001227 969 DLDE-----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDL----EGIANMADG 1020 (1119)
Q Consensus 969 ~Ld~-----------------------aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d-~dl----~~LA~~TeG 1020 (1119)
.+.+ ++..||+..+.|..|+.++-.+|++.++.+.++.-+ ..+ ...|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 2221 344499999999999999999999999988776533 222 233445557
Q ss_pred CcHHHHHHHHH
Q 001227 1021 YSGSDLKNLCV 1031 (1119)
Q Consensus 1021 ysg~DL~~L~~ 1031 (1119)
.||+--.+.+.
T Consensus 233 RSGRtA~QF~~ 243 (249)
T PF05673_consen 233 RSGRTARQFID 243 (249)
T ss_pred CCHHHHHHHHH
Confidence 78865554443
No 133
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=1.6e-11 Score=148.55 Aligned_cols=166 Identities=20% Similarity=0.286 Sum_probs=111.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 927 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 927 (1119)
+.++|||++|+|||+|+++|++++ +..++++++.++...+...........|...++ ...+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 359999999999999999999986 578899998887665543322212223443333 46899999999885332
Q ss_pred CCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC---CCCcHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001227 928 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP---FDLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 928 ~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
..++.+..+++.+... .+-+||++...| ..+++.+++||. .++.+..|+.+.|.+||+..+..
T Consensus 394 ---~tqeeLF~l~N~l~e~---------gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 ---STQEEFFHTFNTLHNA---------NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred ---HHHHHHHHHHHHHHhc---------CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 2244455555555411 223444333333 357789999984 56688999999999999999887
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 001227 1003 EELA-SDVDLEGIANMADGYSGSDLKNLCVT 1032 (1119)
Q Consensus 1003 ~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~ 1032 (1119)
..+. ++..++.|+....+ +.++|..++..
T Consensus 462 r~l~l~~eVi~yLa~r~~r-nvR~LegaL~r 491 (617)
T PRK14086 462 EQLNAPPEVLEFIASRISR-NIRELEGALIR 491 (617)
T ss_pred cCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 6655 45557778877654 45566555544
No 134
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.4e-11 Score=147.12 Aligned_cols=185 Identities=22% Similarity=0.266 Sum_probs=132.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 36899999999999999988763 2344568999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
++.++.+. ......++.+...+... ...|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLL 140 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAML 140 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHH
Confidence 22222211 11234566666666432 23699999999882 12344555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-.+.+...+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555552 356777777777888888899998 789999999999999999888876654 44456778888776 45
Q ss_pred HHHHHHHHHHH
Q 001227 1024 SDLKNLCVTAA 1034 (1119)
Q Consensus 1024 ~DL~~L~~~Aa 1034 (1119)
+++.+++..|.
T Consensus 215 r~al~lldqai 225 (527)
T PRK14969 215 RDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHH
Confidence 56666665544
No 135
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=2.8e-11 Score=143.94 Aligned_cols=169 Identities=17% Similarity=0.261 Sum_probs=112.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHH---HHHHHHHHHHhcCCeEEEEccccccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVVFVDEVDSML 924 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s~~~G~~e~---~I~~lF~~A~k~~PsILfIDEID~L~ 924 (1119)
.+++|||++|+|||+|++++++++ +..++++++.++...+...... .+.. |.... ....+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 469999999999999999999865 5778889887766554332211 1111 11111 245799999999884
Q ss_pred cCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHH
Q 001227 925 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVI 999 (1119)
Q Consensus 925 ~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~l 999 (1119)
++. ..++.+..+++.+... .+.+||++...|. .+++.+.+||. ..+.+..|+.++|.+|++..
T Consensus 220 ~k~---~~~e~lf~l~N~~~~~---------~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFIEN---------DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH---HHHHHHHHHHHHHHHc---------CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 221 2344555555555421 2234444444443 45788999984 56778999999999999999
Q ss_pred Hhhccc---CChhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001227 1000 LAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1036 (1119)
Q Consensus 1000 l~k~~l---~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~ 1036 (1119)
+...++ .++..++.|+..+.| +.+.|..++..+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 887543 355567888888876 566777777666533
No 136
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=3.6e-11 Score=146.31 Aligned_cols=183 Identities=18% Similarity=0.191 Sum_probs=127.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 46899999999999999998863 2334558999999999999999999988642
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHh
Q 001227 880 -------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 942 (1119)
Q Consensus 880 -------------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~ 942 (1119)
++.++.+.. .+-..++.+.+.+.. ....|+||||+|.|- ....+.
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHH
Confidence 222322110 122344444444422 234699999999882 123455
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 001227 943 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1021 (1119)
Q Consensus 943 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGy 1021 (1119)
|+..++. .+..+++|.+|+.++.+.+++++|+ .++.|..++.++..++++.++.++++. ++..+..++..+.|-
T Consensus 138 LLK~LEE----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~Gd 212 (584)
T PRK14952 138 LLKIVEE----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGS 212 (584)
T ss_pred HHHHHhc----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 5555554 2356788888888899999999997 689999999999999999988887653 444566677766653
Q ss_pred cHHHHHHHHHH
Q 001227 1022 SGSDLKNLCVT 1032 (1119)
Q Consensus 1022 sg~DL~~L~~~ 1032 (1119)
.+++.++++.
T Consensus 213 -lR~aln~Ldq 222 (584)
T PRK14952 213 -PRDTLSVLDQ 222 (584)
T ss_pred -HHHHHHHHHH
Confidence 3444444433
No 137
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.33 E-value=6.6e-12 Score=142.81 Aligned_cols=128 Identities=13% Similarity=0.061 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhcc--CCCCeEEEEcChhhhhccC--------hhhH-HHHHHHHhcC--------------CCCEEEEee
Q 001227 557 AINELFEVALNES--KSSPLIVFVKDIEKSLTGN--------NDAY-GALKSKLENL--------------PSNVVVIGS 611 (1119)
Q Consensus 557 ~~~~l~ev~~~es--k~~p~Ilf~~die~~l~~~--------~~~~-~~l~~~L~~L--------------~g~vvvIgs 611 (1119)
+|.++|+.+...+ +.+|.||||||||..+.+. +++. ..|...++.+ ...|+||++
T Consensus 195 ~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaT 274 (413)
T PLN00020 195 LIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVT 274 (413)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEe
Confidence 4556666665543 5689999999999955521 2332 3444544432 347999999
Q ss_pred ccCCCcccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHH
Q 001227 612 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQ 689 (1119)
Q Consensus 612 ~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~ 689 (1119)
+| .||.+|+ ||+| ||++
T Consensus 275 TN------------------------------rpd~LDp-------------------------------ALlRpGRfDk 293 (413)
T PLN00020 275 GN------------------------------DFSTLYA-------------------------------PLIRDGRMEK 293 (413)
T ss_pred CC------------------------------CcccCCH-------------------------------hHcCCCCCCc
Confidence 99 6777777 9999 9999
Q ss_pred HHhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCC----CCHHHHHHHHhhhhhhhhh
Q 001227 690 QLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQT----LTTEGVEKIVGWALSHHFM 749 (1119)
Q Consensus 690 q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~LA~~tkg----~sgadI~~Lv~~A~s~al~ 749 (1119)
.+ .+|+.+.|.+|+++|++. .+++.+++..|+..+.| |.||--+.+...++...+.
T Consensus 294 ~i--~lPd~e~R~eIL~~~~r~--~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 294 FY--WAPTREDRIGVVHGIFRD--DGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIA 353 (413)
T ss_pred ee--CCCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 65 589999999999999753 47778999999998876 5666656555555554443
No 138
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=3.2e-11 Score=145.11 Aligned_cols=184 Identities=22% Similarity=0.282 Sum_probs=129.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++++|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 46899999999999999998763 2234557999999999999999999988531
Q ss_pred ----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhh
Q 001227 880 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 945 (1119)
Q Consensus 880 ----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~ 945 (1119)
++.++... ......++.+...+.. ..+.||||||+|.+. ...++.|+.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 34444321 1122345555444432 235799999999772 123344444
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHH
Q 001227 946 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1024 (1119)
Q Consensus 946 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~ 1024 (1119)
.++. ....+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++..+.+.++. ++..+..|+..+.|..+
T Consensus 139 ~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR- 212 (504)
T PRK14963 139 TLEE----PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMR- 212 (504)
T ss_pred HHHh----CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-
Confidence 4443 2245777778888899999999998 578999999999999999999887654 45567888888877543
Q ss_pred HHHHHHHHH
Q 001227 1025 DLKNLCVTA 1033 (1119)
Q Consensus 1025 DL~~L~~~A 1033 (1119)
++.++++.+
T Consensus 213 ~aln~Lekl 221 (504)
T PRK14963 213 DAESLLERL 221 (504)
T ss_pred HHHHHHHHH
Confidence 444444443
No 139
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.33 E-value=7.9e-11 Score=144.27 Aligned_cols=181 Identities=19% Similarity=0.239 Sum_probs=120.4
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecC
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 886 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V~~s 886 (1119)
+.|.+.++.+++|..++...+.. ..|...++|+|+||||||++++.+.+++ .+.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 47889999999999888643321 1232335799999999999999998765 2668899995
Q ss_pred ccccc----------ccc-------chHHHHHHHHHHHHh--cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhc
Q 001227 887 SITSK----------WFG-------EGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 947 (1119)
Q Consensus 887 ~L~s~----------~~G-------~~e~~I~~lF~~A~k--~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~l 947 (1119)
.+... ..+ .....+..+|..... ....||+|||||.|... .+..+ ..|+...
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVL----YnLFR~~ 896 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVL----FTLFDWP 896 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHH----HHHHHHh
Confidence 43221 101 123456666765532 23469999999999532 22222 2222221
Q ss_pred cCCcccCCccEEEEEecCC---CCCCcHHHHhcccc-ccccCCCCHHHHHHHHHHHHhhc-ccCChhcHHHHHHHcC
Q 001227 948 DGLRTKDKERVLVLAATNR---PFDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMAD 1019 (1119)
Q Consensus 948 dgl~~k~~~~VlVIaTTN~---p~~Ld~aLlrRF~~-~I~v~lPd~eeR~eILk~ll~k~-~l~~d~dl~~LA~~Te 1019 (1119)
. ....++.|||++|. ++.|++.+.+||.. .+.|++++.+++.+||+..+... .+.++..++.+|+...
T Consensus 897 -~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 897 -T---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred -h---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 1 12357999999986 45677888888854 48899999999999999988753 2334555667776443
No 140
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=3e-11 Score=152.02 Aligned_cols=183 Identities=19% Similarity=0.168 Sum_probs=126.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|||||++|+.||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 46899999999999999998762 2333568999999999999999999999642
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCchhHHHHHHHHh
Q 001227 880 -------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 942 (1119)
Q Consensus 880 -------------fi~V~~s~L~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~ 942 (1119)
|+.++.... ..-..++.+-+.+ ......|+||||+|.|- ....+.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~Na 139 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNA 139 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHH
Confidence 222322110 0122344433332 22345799999999982 123445
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 001227 943 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1021 (1119)
Q Consensus 943 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGy 1021 (1119)
|+..|+.. ...+++|++|+.++.|.+.+++|+ ..+.|..++.++..++|+.++.++++. ++..+..|+..+.|
T Consensus 140 LLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 55555543 356778888888888999999998 688999999999999999998877654 34446667777766
Q ss_pred cHHHHHHHHHH
Q 001227 1022 SGSDLKNLCVT 1032 (1119)
Q Consensus 1022 sg~DL~~L~~~ 1032 (1119)
+.+++.++++.
T Consensus 214 dlR~Al~eLEK 224 (824)
T PRK07764 214 SVRDSLSVLDQ 224 (824)
T ss_pred CHHHHHHHHHH
Confidence 44444444443
No 141
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=4e-11 Score=145.17 Aligned_cols=184 Identities=20% Similarity=0.293 Sum_probs=129.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 878 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 878 (1119)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999887752 233467999999999999999999998843
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 879 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 879 ----------~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
.++.++.+. ..+-..++.+...+... ...|++|||+|.|- . ...+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----~-------~A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----T-------SAWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----H-------HHHHHHH
Confidence 123333211 01223466666555433 23699999999882 1 1234455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l-~~d~dl~~LA~~TeGysg 1023 (1119)
..++. ++..+++|++|+.+..+.+++++|+ ..+.|..|+.++...+++..+.+.+. .++..+..++..+.|. .
T Consensus 141 KtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd-l 214 (605)
T PRK05896 141 KTLEE----PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS-L 214 (605)
T ss_pred HHHHh----CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-H
Confidence 55544 2345777888888899999999998 57999999999999999998887664 3455678888888774 4
Q ss_pred HHHHHHHHHH
Q 001227 1024 SDLKNLCVTA 1033 (1119)
Q Consensus 1024 ~DL~~L~~~A 1033 (1119)
+++.++++.+
T Consensus 215 R~AlnlLekL 224 (605)
T PRK05896 215 RDGLSILDQL 224 (605)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 142
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.32 E-value=9.7e-11 Score=128.13 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=113.6
Q ss_pred CCCccccc-C-cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001227 813 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 887 (1119)
Q Consensus 813 ~~sfddI~-G-~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~ 887 (1119)
..+|++.+ | ...+...+.+.... .....++|+||+|||||+|++++++++ +..+.+++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45788844 3 45555555554331 122479999999999999999999876 34455555433
Q ss_pred cccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCcc-EEEEEecCC
Q 001227 888 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 966 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~-VlVIaTTN~ 966 (1119)
... ....+...... ..+|+||||+.+-+. ...++.+..+++.+.. ..+ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~---~~~~~~lf~l~n~~~e---------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD---ELWEMAIFDLYNRILE---------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---HHHHHHHHHHHHHHHH---------cCCCeEEEeCCCC
Confidence 211 11122222222 268999999988321 1223344445444431 123 345555566
Q ss_pred CCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 001227 967 PFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1032 (1119)
Q Consensus 967 p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~ 1032 (1119)
|.. +.+.+++|+. .++.+..|+.++|.++++.......+. ++..++.|+...+| +.+.+.++++.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 655 5799999985 678899999999999999866665443 56667888888776 34455555443
No 143
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.31 E-value=3.9e-11 Score=140.48 Aligned_cols=184 Identities=22% Similarity=0.339 Sum_probs=116.3
Q ss_pred Cccc-ccCcHHHHHHHHHHHhcccCChhhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001227 815 TFDD-IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 889 (1119)
Q Consensus 815 sfdd-I~G~e~ik~~L~e~v~~pL~~pelf-~k---~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~ 889 (1119)
.+++ ++|++++++.+...+.....+.... .. .++.....++||+||||||||++|+++|..++.||..+++..+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 3444 7999999999987774322221110 00 01112235899999999999999999999999999999988765
Q ss_pred c-ccccch-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCchhH--HHHHHHHhhhhhccCCcc---------
Q 001227 890 S-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHE--AMRKMKNEFMVNWDGLRT--------- 952 (1119)
Q Consensus 890 s-~~~G~~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~s~~~~~--~l~~ll~~Ll~~ldgl~~--------- 952 (1119)
. .|+|.. +..+..++..+ ....++||||||||.+..++.++.... ....+.+.|+..++|...
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~ 233 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK 233 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCcc
Confidence 3 466764 34444444322 234678999999999976443321100 001234445555544321
Q ss_pred cCCccEEEEEecCCCC--------------------------------------------------CCcHHHHhcccccc
Q 001227 953 KDKERVLVLAATNRPF--------------------------------------------------DLDEAVVRRLPRRL 982 (1119)
Q Consensus 953 k~~~~VlVIaTTN~p~--------------------------------------------------~Ld~aLlrRF~~~I 982 (1119)
.+..+.++|.|+|-.. -+.|+|+.|++.++
T Consensus 234 ~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv 313 (413)
T TIGR00382 234 HPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIA 313 (413)
T ss_pred ccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEe
Confidence 1224567788877510 03356666888888
Q ss_pred ccCCCCHHHHHHHHHH
Q 001227 983 MVNLPDAPNREKIIRV 998 (1119)
Q Consensus 983 ~v~lPd~eeR~eILk~ 998 (1119)
.|...+.++..+|+..
T Consensus 314 ~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 314 TLEKLDEEALIAILTK 329 (413)
T ss_pred ecCCCCHHHHHHHHHH
Confidence 8888888888888765
No 144
>PRK08727 hypothetical protein; Validated
Probab=99.30 E-value=2e-10 Score=125.58 Aligned_cols=146 Identities=22% Similarity=0.308 Sum_probs=96.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 929 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s 929 (1119)
..++|+||+|||||+|+.++++++ +..+++++..++.. .+...+.... ...+|+|||++.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999997765 66677776544221 2333443332 34699999999884322
Q ss_pred CchhHHHHHHHHhhhhhccCCcccCCccEEEEEec-CCCCCC---cHHHHhcc--ccccccCCCCHHHHHHHHHHHHhhc
Q 001227 930 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-NRPFDL---DEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKE 1003 (1119)
Q Consensus 930 ~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTT-N~p~~L---d~aLlrRF--~~~I~v~lPd~eeR~eILk~ll~k~ 1003 (1119)
..+..+..+++.+. . .+..||.|+ ..|..+ ++.+.+|| ...+.++.|+.++|.++++..+...
T Consensus 110 -~~~~~lf~l~n~~~---------~-~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 -EDEVALFDFHNRAR---------A-AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -HHHHHHHHHHHHHH---------H-cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 12333333333332 1 122344444 455544 68999996 4678899999999999999877654
Q ss_pred ccC-ChhcHHHHHHHcCCC
Q 001227 1004 ELA-SDVDLEGIANMADGY 1021 (1119)
Q Consensus 1004 ~l~-~d~dl~~LA~~TeGy 1021 (1119)
.+. ++..++.|+..+.|-
T Consensus 179 ~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 179 GLALDEAAIDWLLTHGERE 197 (233)
T ss_pred CCCCCHHHHHHHHHhCCCC
Confidence 443 556678888887753
No 145
>PRK06893 DNA replication initiation factor; Validated
Probab=99.30 E-value=1.3e-10 Score=126.70 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=99.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 929 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s 929 (1119)
+.++|+||||||||+|++++|+++ +....+++..... .....++.... +..+|+||||+.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 368999999999999999999886 4455555543211 11112233222 34799999999874322
Q ss_pred CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc---HHHHhcc--ccccccCCCCHHHHHHHHHHHHhhcc
Q 001227 930 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 1004 (1119)
Q Consensus 930 ~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld---~aLlrRF--~~~I~v~lPd~eeR~eILk~ll~k~~ 1004 (1119)
..+..+..+++.+.. .+..++|++++..|..++ +.+.+|+ +..+.++.|+.++|.+|++..+....
T Consensus 108 -~~~~~l~~l~n~~~~--------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 -EWELAIFDLFNRIKE--------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred -HHHHHHHHHHHHHHH--------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 112233333333321 113345566666666554 7888876 46788999999999999998887655
Q ss_pred cC-ChhcHHHHHHHcCCCcHHHHHHHHH
Q 001227 1005 LA-SDVDLEGIANMADGYSGSDLKNLCV 1031 (1119)
Q Consensus 1005 l~-~d~dl~~LA~~TeGysg~DL~~L~~ 1031 (1119)
+. ++..++.|+...+|- .+.+..+++
T Consensus 179 l~l~~~v~~~L~~~~~~d-~r~l~~~l~ 205 (229)
T PRK06893 179 IELSDEVANFLLKRLDRD-MHTLFDALD 205 (229)
T ss_pred CCCCHHHHHHHHHhccCC-HHHHHHHHH
Confidence 43 566678888887753 334444433
No 146
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.30 E-value=6.6e-11 Score=131.50 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=93.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------cccccccchHHH-HH-------------------HHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKY-VK-------------------AVFSL 906 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~------L~s~~~G~~e~~-I~-------------------~lF~~ 906 (1119)
.++||+||||||||++|+++|+.+|.+++.++|.. +.+.+.+..... .. ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999998854 233222211111 11 11222
Q ss_pred HHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCccc-----CCccEEEEEecCCC-----CCCcHHHHh
Q 001227 907 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----DKERVLVLAATNRP-----FDLDEAVVR 976 (1119)
Q Consensus 907 A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k-----~~~~VlVIaTTN~p-----~~Ld~aLlr 976 (1119)
|.+ .+.+|+||||+++ ++..+..+..++++....+.+.... ...++.||+|+|+. ..+++++.+
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 333 3479999999986 3333444444443322222221110 12467899999975 367899999
Q ss_pred ccccccccCCCCHHHHHHHHHHHH
Q 001227 977 RLPRRLMVNLPDAPNREKIIRVIL 1000 (1119)
Q Consensus 977 RF~~~I~v~lPd~eeR~eILk~ll 1000 (1119)
|| ..+.++.|+.++..+|++...
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 678999999999999998764
No 147
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.30 E-value=3.1e-11 Score=151.82 Aligned_cols=171 Identities=19% Similarity=0.306 Sum_probs=115.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-------
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 890 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s------- 890 (1119)
+..|++++|+.+.+++....... ......++|+||||+|||++++.+|..++.+++.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~--------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN--------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc--------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 48999999999998876422211 112346999999999999999999999999999998765322
Q ss_pred --ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHh-----hhhhccCCcccCCccEEEEEe
Q 001227 891 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 963 (1119)
Q Consensus 891 --~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~-----Ll~~ldgl~~k~~~~VlVIaT 963 (1119)
.|.|.....+.+.+..+.... .||+|||||.+..... ......+..++.. |....-.+ +-+-.++++|+|
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-g~~~~aLlevld~~~~~~~~d~~~~~-~~dls~v~~i~T 471 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-GDPASALLEVLDPEQNVAFSDHYLEV-DYDLSDVMFVAT 471 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-CCHHHHHHHHhccccEEEEecccccc-cccCCceEEEEc
Confidence 244444444555555544333 4899999999853321 1112222222221 00000001 112367999999
Q ss_pred cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHh
Q 001227 964 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1001 (1119)
Q Consensus 964 TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~ 1001 (1119)
+|.. .+++++++|| ..|.+..++.++..+|.+.++-
T Consensus 472 aN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 472 SNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 9886 5999999999 5789999999999999988874
No 148
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=6.3e-11 Score=144.96 Aligned_cols=175 Identities=21% Similarity=0.280 Sum_probs=126.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 46899999999999999998763 2344668999999999999999999998542
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
++.++... ......++.+...+... ...|+||||+|.|- ....+.|+
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLL 140 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALL 140 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHH
Confidence 33333221 11233466666555432 23599999999882 12334555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++. .+..+++|.+|+.++.|.+.+++|+ ..+.|..++.++....+..++.++++. ++..+..|+..+.|-.+
T Consensus 141 k~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr 215 (576)
T PRK14965 141 KTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMR 215 (576)
T ss_pred HHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 55544 2356788888888899999999998 688999999999998998888877654 45567778888877443
No 149
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=8e-11 Score=143.26 Aligned_cols=184 Identities=20% Similarity=0.220 Sum_probs=129.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 46899999999999999998862 2234569999999999999999999998642
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
++.++... ...-..++.+.+.+.. ....|++|||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222111 0122345555444332 234699999999882 12345556
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++. .+..+++|++|+.+..+.+++++|+ ..+.|..++.++..++++..+...++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred Hhhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55554 2356778888887888999999998 578899999999999999888776644 45567778888777 45
Q ss_pred HHHHHHHHHH
Q 001227 1024 SDLKNLCVTA 1033 (1119)
Q Consensus 1024 ~DL~~L~~~A 1033 (1119)
+++.+++..+
T Consensus 215 R~alslLdkl 224 (563)
T PRK06647 215 RDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 150
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1e-11 Score=136.80 Aligned_cols=147 Identities=16% Similarity=0.190 Sum_probs=112.9
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEeeccCCCcccccCC
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSH 623 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~--------~~~~~~~~l~~~L~~L~g-----~vvvIgs~~~~d~~k~k~~ 623 (1119)
+|.+-|.-+.. .+|+|||++|||.... .++++-..|.+.|+.+.| .|-+|+|+|
T Consensus 213 lIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatN---------- 279 (388)
T KOG0651|consen 213 LIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATN---------- 279 (388)
T ss_pred HHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecC----------
Confidence 56666666666 8999999999999554 356677777777777754 999999999
Q ss_pred CCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcc
Q 001227 624 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 701 (1119)
Q Consensus 624 ~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR 701 (1119)
.||.+|| ||+| |.++.+++|+|++.+|
T Consensus 280 --------------------rpdtLdp-------------------------------aLlRpGRldrk~~iPlpne~~r 308 (388)
T KOG0651|consen 280 --------------------RPDTLDP-------------------------------ALLRPGRLDRKVEIPLPNEQAR 308 (388)
T ss_pred --------------------Cccccch-------------------------------hhcCCccccceeccCCcchhhc
Confidence 6777787 9999 9999999999999999
Q ss_pred cchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhh
Q 001227 702 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 780 (1119)
Q Consensus 702 ~~Il~IhT~-l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~ 780 (1119)
..|++||.. +...+- .+-+.+.....+|+|+|++..|++|--+++.. +...+...+|+.+..
T Consensus 309 ~~I~Kih~~~i~~~Ge--id~eaivK~~d~f~gad~rn~~tEag~Fa~~~---------------~~~~vl~Ed~~k~vr 371 (388)
T KOG0651|consen 309 LGILKIHVQPIDFHGE--IDDEAILKLVDGFNGADLRNVCTEAGMFAIPE---------------ERDEVLHEDFMKLVR 371 (388)
T ss_pred eeeEeecccccccccc--ccHHHHHHHHhccChHHHhhhcccccccccch---------------hhHHHhHHHHHHHHH
Confidence 999999987 554443 22456777788999999999999998776641 222344567776655
Q ss_pred hhhh
Q 001227 781 ESKS 784 (1119)
Q Consensus 781 eik~ 784 (1119)
++..
T Consensus 372 k~~~ 375 (388)
T KOG0651|consen 372 KQAD 375 (388)
T ss_pred HHHH
Confidence 5444
No 151
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=9.4e-11 Score=144.41 Aligned_cols=189 Identities=21% Similarity=0.290 Sum_probs=131.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec----
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM---- 885 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V---~~---- 885 (1119)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 46899999999999999998863 23446789999999999999999999886531100 00
Q ss_pred ------Cccc-ccc-ccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCccc
Q 001227 886 ------SSIT-SKW-FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 953 (1119)
Q Consensus 886 ------s~L~-s~~-~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k 953 (1119)
.++. ... ...+...++.+.+.+... ...|++|||+|.|- ....+.|+..++..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEP--- 145 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEP--- 145 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcC---
Confidence 0000 000 001234577777666543 34699999999882 12345566665542
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 001227 954 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1032 (1119)
Q Consensus 954 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~ 1032 (1119)
+..+++|.+|+.++.|.+++++|+ .++.|..|+.++...+++..+.+.++. ++..+..+|..+.|-. +++..++..
T Consensus 146 -P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl-R~AlslLek 222 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL-RDALSIAEQ 222 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 356778888888899999999999 589999999999999999888876654 3444777888887744 444444443
No 152
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.2e-10 Score=135.17 Aligned_cols=183 Identities=19% Similarity=0.236 Sum_probs=126.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 880 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~f------------ 880 (1119)
..+|++++|++.+.+.+.+.+.. ...++++|||||||+|||++|+++|+.+..+.
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 46899999999999999988762 23446899999999999999999999875421
Q ss_pred EEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCc
Q 001227 881 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 956 (1119)
Q Consensus 881 i~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~ 956 (1119)
+.++.. .......++.++..+... ...||+|||+|.+.. ...+.++..++.. +.
T Consensus 80 ~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~----~~ 137 (367)
T PRK14970 80 FELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP----PA 137 (367)
T ss_pred EEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC----CC
Confidence 112111 111234566777666432 246999999998721 1234444444432 23
Q ss_pred cEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHH
Q 001227 957 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1032 (1119)
Q Consensus 957 ~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~ 1032 (1119)
..++|.+|+.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++. ++..++.|+..+.| +.+.+.+.++.
T Consensus 138 ~~~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred ceEEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4566666777788999999998 568899999999999999888887653 55667788887765 44444444443
No 153
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.5e-10 Score=137.86 Aligned_cols=183 Identities=21% Similarity=0.253 Sum_probs=126.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 46899999999999999988762 2344679999999999999999999988442
Q ss_pred ------------EEEEecCccccccccchHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhh
Q 001227 880 ------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 943 (1119)
Q Consensus 880 ------------fi~V~~s~L~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~L 943 (1119)
++.++.... . +-..++.+-+.+ ......||+|||+|.|. ....+.|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~L 141 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSL 141 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHH
Confidence 333332111 0 112333332222 22345899999999882 1123445
Q ss_pred hhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCc
Q 001227 944 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1022 (1119)
Q Consensus 944 l~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGys 1022 (1119)
+..++.. +..+++|++|+.+..+.+++++|+ ..+.+..++.++...+++..+++.+.. ++..++.|+..+.|-
T Consensus 142 Lk~lEep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gd- 215 (451)
T PRK06305 142 LKTLEEP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGS- 215 (451)
T ss_pred HHHhhcC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 5555542 246777778888889999999999 578999999999999999888776643 555678888888763
Q ss_pred HHHHHHHHHH
Q 001227 1023 GSDLKNLCVT 1032 (1119)
Q Consensus 1023 g~DL~~L~~~ 1032 (1119)
.+++.++++.
T Consensus 216 lr~a~~~Lek 225 (451)
T PRK06305 216 LRDAESLYDY 225 (451)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 154
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.26 E-value=1.9e-10 Score=141.73 Aligned_cols=232 Identities=19% Similarity=0.227 Sum_probs=136.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 882 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~ 882 (1119)
..+|++++|.+..+..+.+.+.. . .+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~-~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------P-FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------C-CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 46899999999998887665531 1 13579999999999999999997655 357899
Q ss_pred EecCcccc-------ccccchHHH----HHHHHHH----------HHhcCCeEEEEccccccccCCCCCchhHHHHHHHH
Q 001227 883 ISMSSITS-------KWFGEGEKY----VKAVFSL----------ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 941 (1119)
Q Consensus 883 V~~s~L~s-------~~~G~~e~~----I~~lF~~----------A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~ 941 (1119)
++|..+.. .+++..... .+..+.. ......++|||||++.| +...+..+..+++
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHh
Confidence 99876521 122211100 0000100 01223479999999988 3333444444443
Q ss_pred hhhhhccC-----------------CcccCCccEEEEEe-cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc
Q 001227 942 EFMVNWDG-----------------LRTKDKERVLVLAA-TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1003 (1119)
Q Consensus 942 ~Ll~~ldg-----------------l~~k~~~~VlVIaT-TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~ 1003 (1119)
.-...+.+ +....+..+++|++ |+.+..+++++++||. .+.++.++.++...|++.++.+.
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 32111000 00111234566655 4668889999999995 67888899999999999998875
Q ss_pred ccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHH
Q 001227 1004 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 1082 (1119)
Q Consensus 1004 ~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~k 1082 (1119)
.+. ++..++.|+..+. .++...+++..+...+..+.. .. . .......|+.+|+.+++..
T Consensus 370 ~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~--------~~-~---------~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 370 NVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAA--------EA-G---------KENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHH--------Hh-c---------cCCCCeeECHHHHHHHhCC
Confidence 432 3444555666543 333333444444322222110 00 0 0112257899999999876
Q ss_pred hc
Q 001227 1083 VC 1084 (1119)
Q Consensus 1083 v~ 1084 (1119)
-+
T Consensus 430 ~r 431 (615)
T TIGR02903 430 SR 431 (615)
T ss_pred Cc
Confidence 43
No 155
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.25 E-value=1.9e-11 Score=146.36 Aligned_cols=126 Identities=19% Similarity=0.260 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhcc-CCCCeEEEEcChhhhhcc-----Chh----hHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCC
Q 001227 557 AINELFEVALNES-KSSPLIVFVKDIEKSLTG-----NND----AYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 624 (1119)
Q Consensus 557 ~~~~l~ev~~~es-k~~p~Ilf~~die~~l~~-----~~~----~~~~l~~~L~~L~--g~vvvIgs~~~~d~~k~k~~~ 624 (1119)
.+..+|+.+...+ ...|+||||||+|.++.. +.+ +.+.|...|+.+. ++|+|||+||
T Consensus 273 ~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN----------- 341 (512)
T TIGR03689 273 QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASN----------- 341 (512)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccC-----------
Confidence 4566777665533 347999999999997652 122 2344445555554 5899999999
Q ss_pred CCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhccc
Q 001227 625 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 702 (1119)
Q Consensus 625 ~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~ 702 (1119)
.||.+|+ |++| ||++++++++|+.++|.
T Consensus 342 -------------------~~d~LDp-------------------------------ALlRpGRfD~~I~~~~Pd~e~r~ 371 (512)
T TIGR03689 342 -------------------REDMIDP-------------------------------AILRPGRLDVKIRIERPDAEAAA 371 (512)
T ss_pred -------------------ChhhCCH-------------------------------hhcCccccceEEEeCCCCHHHHH
Confidence 5556666 9998 99999999999999999
Q ss_pred chhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhh
Q 001227 703 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 749 (1119)
Q Consensus 703 ~Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~ 749 (1119)
+|++.|..- ..++ + .....+.|+.++++.++|..|....+.
T Consensus 372 ~Il~~~l~~-~l~l-~----~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 372 DIFSKYLTD-SLPL-D----ADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred HHHHHHhhc-cCCc-h----HHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 999998421 1122 2 223346899999999999999766654
No 156
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.7e-10 Score=138.39 Aligned_cols=184 Identities=21% Similarity=0.299 Sum_probs=126.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++++|++.+.+.|...+.. .+.++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 46899999999999999998862 2234568999999999999999999988531
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 880 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 880 -----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
++.++.+. ......++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLL 140 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALL 140 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHH
Confidence 12222111 11233455555555432 34699999999872 11234455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++.. +..+++|.+|+.++.+.+++.+|+ ..+.+..|+.++...+++.+++..++. ++..+..|+..+.|- .
T Consensus 141 k~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~-l 214 (486)
T PRK14953 141 KTLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG-M 214 (486)
T ss_pred HHHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 555442 234566666677788888999998 478999999999999999998887654 445577788887764 4
Q ss_pred HHHHHHHHHH
Q 001227 1024 SDLKNLCVTA 1033 (1119)
Q Consensus 1024 ~DL~~L~~~A 1033 (1119)
+++.++++.+
T Consensus 215 r~al~~Ldkl 224 (486)
T PRK14953 215 RDAASLLDQA 224 (486)
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 157
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.25 E-value=3.9e-11 Score=142.88 Aligned_cols=193 Identities=23% Similarity=0.270 Sum_probs=141.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 884 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~f-------i~V~- 884 (1119)
..+|+|++|++.+...|...+.. .+-..+.||.||.|+|||++||.+|+.+++.- ..|.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 46899999999999999998874 33446799999999999999999999986542 1111
Q ss_pred cCccccc-cc---------cchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCC
Q 001227 885 MSSITSK-WF---------GEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 950 (1119)
Q Consensus 885 ~s~L~s~-~~---------G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl 950 (1119)
|-.+... +. ..+-..++.+.+.+.- .+..|.+|||+|.|- ...+|.|+..++.
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc-
Confidence 1111111 11 1123456666666543 234699999999872 4566777777665
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCC-hhcHHHHHHHcCCCcHHHHHHH
Q 001227 951 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDLEGIANMADGYSGSDLKNL 1029 (1119)
Q Consensus 951 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~-d~dl~~LA~~TeGysg~DL~~L 1029 (1119)
++..|.+|.+|..++.++..+++|+ .++.|...+.++....|..++.++.+.- +..+..+|+..+| +.+|...|
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 4578999999999999999999999 6788999999999999999999988764 4447778888877 45566666
Q ss_pred HHHHHhh
Q 001227 1030 CVTAAHC 1036 (1119)
Q Consensus 1030 ~~~Aa~~ 1036 (1119)
...|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 5555443
No 158
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=2e-10 Score=138.32 Aligned_cols=187 Identities=21% Similarity=0.240 Sum_probs=131.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 878 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 878 (1119)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999998762 223456799999999999999999998732
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 879 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 879 ----------~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
.++.++.+.- ..-..++.+...+... ...|++|||+|.|- ....+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 1233332110 1123455555443322 12599999999882 12334445
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 945 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 945 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
..++.. +..+.+|.+|+.+..+.+++++|+ ..+.|..++.++....++..+.++++. ++..+..|+..+.| +.
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 555442 245667777777899999999997 688999999999999999888887654 45667888888876 56
Q ss_pred HHHHHHHHHHHhh
Q 001227 1024 SDLKNLCVTAAHC 1036 (1119)
Q Consensus 1024 ~DL~~L~~~Aa~~ 1036 (1119)
+++.+++..|...
T Consensus 213 R~alnlLdqai~~ 225 (535)
T PRK08451 213 RDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHHh
Confidence 6777777665544
No 159
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.23 E-value=1.7e-10 Score=132.46 Aligned_cols=168 Identities=18% Similarity=0.231 Sum_probs=106.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEec
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISM 885 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg-------~~fi~V~~ 885 (1119)
...|.+|+|++++|..|.-.+.. ....++||.|++|||||++|++++..+. .||. .+.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 45799999999999998775542 1235899999999999999999977662 2332 111
Q ss_pred C--c-----cccc---------------c----ccchHHH------HHHHHHHHH---------hcCCeEEEEccccccc
Q 001227 886 S--S-----ITSK---------------W----FGEGEKY------VKAVFSLAS---------KIAPSVVFVDEVDSML 924 (1119)
Q Consensus 886 s--~-----L~s~---------------~----~G~~e~~------I~~lF~~A~---------k~~PsILfIDEID~L~ 924 (1119)
. + +... + .+.++.. +...|.... +...++||||||+.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 0 0 0000 0 0111111 111222111 112379999999988
Q ss_pred cCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCCC-CCcHHHHhccccccccCCCC-HHHHHHHHHHHH
Q 001227 925 GRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPD-APNREKIIRVIL 1000 (1119)
Q Consensus 925 ~~r~s~~~~~~l~~ll~~Ll~~l--dgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~v~lPd-~eeR~eILk~ll 1000 (1119)
++..+..+...+.+-...+ +|.....+.++++|+|.|..+ .+.++++.||...+.+..|+ .+.|.+|++...
T Consensus 157 ----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 157 ----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred ----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 3333444433333322222 344333456899999888765 69999999999999999997 599999998754
No 160
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=2.5e-10 Score=139.63 Aligned_cols=190 Identities=22% Similarity=0.170 Sum_probs=131.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-------c
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------M 885 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~-------~ 885 (1119)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.....+ |
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 46899999999999999997763 234568999999999999999999999865422111 0
Q ss_pred --------------Cccccc--cccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhh
Q 001227 886 --------------SSITSK--WFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 945 (1119)
Q Consensus 886 --------------s~L~s~--~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~ 945 (1119)
.++... .....-..++.+.+.+... ...|+||||+|.|- ....+.|+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLK 154 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLK 154 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHH
Confidence 011000 0011234567777666533 24799999999882 122345555
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHH
Q 001227 946 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1024 (1119)
Q Consensus 946 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~ 1024 (1119)
.++.. +..+.+|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++..+.+++.. ++..++.|+..+.|. .+
T Consensus 155 tLEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd-lr 228 (598)
T PRK09111 155 TLEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS-VR 228 (598)
T ss_pred HHHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 55442 345677777777778888999998 678999999999999999998887654 445577778888764 45
Q ss_pred HHHHHHHHH
Q 001227 1025 DLKNLCVTA 1033 (1119)
Q Consensus 1025 DL~~L~~~A 1033 (1119)
++.+++..+
T Consensus 229 ~al~~Ldkl 237 (598)
T PRK09111 229 DGLSLLDQA 237 (598)
T ss_pred HHHHHHHHH
Confidence 555555444
No 161
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=2.7e-10 Score=140.11 Aligned_cols=182 Identities=21% Similarity=0.254 Sum_probs=128.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++++|++.+++.|...+.. .+-..++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~-------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS-------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 46899999999999999998763 1223579999999999999999999998652
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHh
Q 001227 880 -------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 942 (1119)
Q Consensus 880 -------------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~ 942 (1119)
++.++.. .......++.+...+... ...||||||+|.|- ....+.
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~na 140 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNA 140 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHH
Confidence 1222211 122345677777766532 23699999999882 123455
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCC
Q 001227 943 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1021 (1119)
Q Consensus 943 Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGy 1021 (1119)
|+..++. ....+++|++|+.+..+.+++++|+ ..+.|..++.++-...+..++.+++.. ++..+..|+..+.|.
T Consensus 141 LLK~LEe----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~ 215 (620)
T PRK14948 141 LLKTLEE----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG 215 (620)
T ss_pred HHHHHhc----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 5665554 2355777777778888999999998 678888888888888888877775433 345578888888875
Q ss_pred cHHHHHHHHH
Q 001227 1022 SGSDLKNLCV 1031 (1119)
Q Consensus 1022 sg~DL~~L~~ 1031 (1119)
. +++.++++
T Consensus 216 l-r~A~~lLe 224 (620)
T PRK14948 216 L-RDAESLLD 224 (620)
T ss_pred H-HHHHHHHH
Confidence 4 33333333
No 162
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.22 E-value=3.2e-10 Score=128.03 Aligned_cols=184 Identities=22% Similarity=0.276 Sum_probs=122.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 887 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg-----~~fi~V~~s~ 887 (1119)
..+|+++.|.+++++.+..++.. . ..+++||+||||+|||++++++++++. .+++.+++++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~----------~----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE----------K----NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 46899999999999999987752 1 123699999999999999999999872 3456665543
Q ss_pred cccccccchHHHHHHH-HHHHHh-----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001227 888 ITSKWFGEGEKYVKAV-FSLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 961 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~l-F~~A~k-----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVI 961 (1119)
... ...+... ...+.. ..+.+|+|||+|.+.. ..+ +.+...++... ....+|
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----~~~-------~~L~~~le~~~----~~~~lI 136 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----DAQ-------QALRRTMEMYS----QNTRFI 136 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----HHH-------HHHHHHHhcCC----CCCeEE
Confidence 211 1122222 222221 2346999999998821 111 22222333221 234566
Q ss_pred EecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 001227 962 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 962 aTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa 1034 (1119)
.++|.+..+.+.+.+|+. .+.++.++.++...+++.++.+.++. ++..++.++..+.|.... +.+.++.++
T Consensus 137 l~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~-~~~~l~~~~ 208 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRK-AINALQAAA 208 (319)
T ss_pred EEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 677777788888888984 68999999999999999998876653 566688888888775443 333334433
No 163
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.21 E-value=1.5e-10 Score=132.62 Aligned_cols=166 Identities=20% Similarity=0.271 Sum_probs=103.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEE
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINI 883 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-------g~~--fi~V 883 (1119)
...|.+|+|+++++..|.-.+.. ....++||+|+||||||++|++++.-+ +++ +..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 35789999999999988653321 112479999999999999999999988 332 1111
Q ss_pred ec-Ccc--------c---------------cccccch--HHH--------HHHHHHHHHhcCCeEEEEccccccccCCCC
Q 001227 884 SM-SSI--------T---------------SKWFGEG--EKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRREN 929 (1119)
Q Consensus 884 ~~-s~L--------~---------------s~~~G~~--e~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~s 929 (1119)
.+ .++ . ...+|.. +.. -...+..| ..++||||||+.+ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl-----~ 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLL-----E 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhC-----C
Confidence 10 000 0 0012210 000 00111111 2279999999987 3
Q ss_pred CchhHHHHHHHHhhh--hhccCCcccCCccEEEEEecCCCC-CCcHHHHhccccccccCCCCH-HHHHHHHHHHH
Q 001227 930 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1000 (1119)
Q Consensus 930 ~~~~~~l~~ll~~Ll--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~v~lPd~-eeR~eILk~ll 1000 (1119)
+..+..+...+++-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.++++...
T Consensus 142 ~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 333444444443322 122444434457899999999754 689999999998888888776 89999998754
No 164
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.20 E-value=5.3e-11 Score=137.91 Aligned_cols=207 Identities=23% Similarity=0.295 Sum_probs=134.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecCcc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINISMSSI 888 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~e----lg~~fi~V~~s~L 888 (1119)
...+.+++|.....+.+.+.+.. +. ....+|||+|++||||+.+|++|... .+.|||.+||+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~a-----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------YA-----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------hC-----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 34678899998888888887763 11 12246999999999999999999633 3679999999875
Q ss_pred ccc-----cccch-------HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCc
Q 001227 889 TSK-----WFGEG-------EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 956 (1119)
Q Consensus 889 ~s~-----~~G~~-------e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~ 956 (1119)
... .||.. ...-..+|+.|.. ++||+|||..| ++..++.+.++++.....--|-......
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~~~~~ 213 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQPRPV 213 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCCCcCC
Confidence 433 33321 2223346666655 89999999988 6677888888887765553343334457
Q ss_pred cEEEEEecCCC--CCCcH--HHHhccccccccCCCCHHHHHH----HHHHHHhh----cccCChhc----HHHHHHHcCC
Q 001227 957 RVLVLAATNRP--FDLDE--AVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELASDVD----LEGIANMADG 1020 (1119)
Q Consensus 957 ~VlVIaTTN~p--~~Ld~--aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k----~~l~~d~d----l~~LA~~TeG 1020 (1119)
+|++|+||+.. +.+-. .+.+|. ..+.+.+|+..+|.. ++++++.. .......+ +..|-...--
T Consensus 214 dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~p 292 (403)
T COG1221 214 DVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWP 292 (403)
T ss_pred CceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 89999999742 22222 344422 236778888887753 44444443 33222222 2223332222
Q ss_pred CcHHHHHHHHHHHHhhhHHH
Q 001227 1021 YSGSDLKNLCVTAAHCPIRE 1040 (1119)
Q Consensus 1021 ysg~DL~~L~~~Aa~~airr 1040 (1119)
-+.++|+++++.++..+..+
T Consensus 293 GNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 293 GNIRELKNLVERAVAQASGE 312 (403)
T ss_pred CcHHHHHHHHHHHHHHhccc
Confidence 36789999999998877544
No 165
>PRK06620 hypothetical protein; Validated
Probab=99.20 E-value=5.5e-10 Score=120.69 Aligned_cols=143 Identities=16% Similarity=0.236 Sum_probs=95.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 932 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 932 (1119)
+.++||||||+|||+|++++++..+..++. .... ....+ + ...+|+|||||.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~----~-~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL----E-KYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH----h-cCCEEEEeccccc--------h
Confidence 579999999999999999999988754322 1000 01111 1 2379999999965 1
Q ss_pred hHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC--CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-C
Q 001227 933 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD--LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-S 1007 (1119)
Q Consensus 933 ~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~--Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k~~l~-~ 1007 (1119)
...+..+++.+. +.+..+||+++..|.. + +.+++|+. .++.+..|+.+.+..+++..+....+. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 233444444443 1244677777755543 5 88999984 368899999999999999888765543 5
Q ss_pred hhcHHHHHHHcCCCcHHHHHHHHHH
Q 001227 1008 DVDLEGIANMADGYSGSDLKNLCVT 1032 (1119)
Q Consensus 1008 d~dl~~LA~~TeGysg~DL~~L~~~ 1032 (1119)
+..++.|+....| +.+.+.++++.
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHH
Confidence 6667888888765 34455444443
No 166
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=4e-10 Score=132.41 Aligned_cols=183 Identities=17% Similarity=0.206 Sum_probs=123.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------------- 879 (1119)
..+|++|+|++.+++.|...+.. .+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 46899999999999999887762 2344569999999999999999999999652
Q ss_pred -------------------EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHH
Q 001227 880 -------------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAM 936 (1119)
Q Consensus 880 -------------------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l 936 (1119)
++.++... ......++.+.+.+... ...|+||||+|.|-.
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----------- 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----------- 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-----------
Confidence 11121110 01123455554444321 236999999998821
Q ss_pred HHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhcHHHHH
Q 001227 937 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 1015 (1119)
Q Consensus 937 ~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l-~~d~dl~~LA 1015 (1119)
...+.|+..++. .+...++|.+|+.+..+.+++.+|+ ..+.+..++.++-.++++..++.... .++..++.|+
T Consensus 142 -~~~~~LLk~LEe----p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 142 -AAFNAFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred -HHHHHHHHHHhc----CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 122334444443 2234566666667788888999998 57889999999988888888877654 3566678888
Q ss_pred HHcCCCcHHHHHHHHHH
Q 001227 1016 NMADGYSGSDLKNLCVT 1032 (1119)
Q Consensus 1016 ~~TeGysg~DL~~L~~~ 1032 (1119)
..+.|. .+.+.++++.
T Consensus 216 ~~s~g~-lr~a~~~L~k 231 (397)
T PRK14955 216 RKAQGS-MRDAQSILDQ 231 (397)
T ss_pred HHcCCC-HHHHHHHHHH
Confidence 888774 3444444443
No 167
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.20 E-value=1.8e-10 Score=112.38 Aligned_cols=141 Identities=40% Similarity=0.619 Sum_probs=88.6
Q ss_pred CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchH
Q 001227 821 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGE 897 (1119)
Q Consensus 821 G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~e 897 (1119)
|.+...+.+...+.. ....+++|+||||+|||++++.+++.+ +.+++.+++............
T Consensus 2 ~~~~~~~~i~~~~~~--------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 2 GQEEAIEALREALEL--------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred chHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH
Confidence 445566666665431 133579999999999999999999998 899999998775543222111
Q ss_pred HH---HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC--CCcH
Q 001227 898 KY---VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDE 972 (1119)
Q Consensus 898 ~~---I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~ 972 (1119)
.. ....+..+....+.+|+|||++.+. .........++..+. ... ....++.+|++++... .+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-----~~~~~~~~~~i~~~~---~~~--~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 68 FGHFLVRLLFELAEKAKPGVLFIDEIDSLS-----RGAQNALLRVLETLN---DLR--IDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhhHhHHHHhhccCCCeEEEEeChhhhh-----HHHHHHHHHHHHhcC---cee--ccCCCeEEEEecCccccCCcCh
Confidence 11 1222334445567999999999761 111122222222221 111 1235688889998776 7888
Q ss_pred HHHhccccccccC
Q 001227 973 AVVRRLPRRLMVN 985 (1119)
Q Consensus 973 aLlrRF~~~I~v~ 985 (1119)
.+.+||+.++.++
T Consensus 138 ~~~~r~~~~i~~~ 150 (151)
T cd00009 138 ALYDRLDIRIVIP 150 (151)
T ss_pred hHHhhhccEeecC
Confidence 8999998665554
No 168
>PRK05642 DNA replication initiation factor; Validated
Probab=99.19 E-value=8.9e-10 Score=120.56 Aligned_cols=157 Identities=20% Similarity=0.238 Sum_probs=103.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 928 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 928 (1119)
...++|+||+|+|||+|++++++++ +..+++++..++... ...+.+.... ..+|+|||++.+.+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 3579999999999999999998765 677888887665432 1122222222 2589999999774221
Q ss_pred CCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhc
Q 001227 929 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKE 1003 (1119)
Q Consensus 929 s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k~ 1003 (1119)
..++.+..+++.+. ...+.+||+++..|.. +.+.+++||. ..+.+..|+.++|.++++..+...
T Consensus 114 --~~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~ 182 (234)
T PRK05642 114 --DWEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR 182 (234)
T ss_pred --HHHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 22344555555443 1244567776655533 3688999984 567789999999999999665554
Q ss_pred cc-CChhcHHHHHHHcCCCcHHHHHHHHH
Q 001227 1004 EL-ASDVDLEGIANMADGYSGSDLKNLCV 1031 (1119)
Q Consensus 1004 ~l-~~d~dl~~LA~~TeGysg~DL~~L~~ 1031 (1119)
.+ .++..++.|+...++ +.+.+..+++
T Consensus 183 ~~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 183 GLHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 43 355567778887765 4445544444
No 169
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=6.9e-10 Score=136.11 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=122.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------- 882 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~---------- 882 (1119)
..+|++|+|++.+++.|...+.. .+-+..+||+||+|+|||++|+.+|+.+.+.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 46899999999999999987752 2334579999999999999999999999762100
Q ss_pred EecC--------------cccccccc---chHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHH
Q 001227 883 ISMS--------------SITSKWFG---EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 941 (1119)
Q Consensus 883 V~~s--------------~L~s~~~G---~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~ 941 (1119)
-.|. ++. .+-+ .....++.+.+.+.. ....|++|||+|.|. . ...+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~----~a~n 145 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------T----AAFN 145 (620)
T ss_pred CCCccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------H----HHHH
Confidence 0010 000 0001 112345555444421 224699999999882 1 1234
Q ss_pred hhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCC
Q 001227 942 EFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADG 1020 (1119)
Q Consensus 942 ~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l-~~d~dl~~LA~~TeG 1020 (1119)
.|+..++.. +..+++|.+|+.+..+.+++.+|+ ..+.|..++.++-...++..+..++. .++..++.|+..+.|
T Consensus 146 aLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 455555442 234566666677788889999998 68899999999998888888877664 356668888888887
Q ss_pred CcH
Q 001227 1021 YSG 1023 (1119)
Q Consensus 1021 ysg 1023 (1119)
..+
T Consensus 221 dlr 223 (620)
T PRK14954 221 SMR 223 (620)
T ss_pred CHH
Confidence 444
No 170
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.17 E-value=7.9e-10 Score=119.85 Aligned_cols=168 Identities=19% Similarity=0.317 Sum_probs=103.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 927 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 927 (1119)
..++||||+|+|||+|.+|+++++ +..++++++.++...+.......-..-|....+ ...+|+||+++.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK- 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc-
Confidence 359999999999999999998875 577889988776554322111100111222222 3479999999998422
Q ss_pred CCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhh
Q 001227 928 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 928 ~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
...++.+..+++.+.. ..+.+||++...|.. +++.+.+||. ..+.+..|+.+.|.+|++..+..
T Consensus 113 --~~~q~~lf~l~n~~~~---------~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 113 --QRTQEELFHLFNRLIE---------SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp --HHHHHHHHHHHHHHHH---------TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHh---------hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 1234455555555542 134456666555543 5688999874 47888999999999999999888
Q ss_pred cccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 001227 1003 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 1003 ~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa 1034 (1119)
..+. ++..++.|+....+ +.++|..+++.-.
T Consensus 182 ~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 182 RGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp TT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 6655 44456677777654 5666666655443
No 171
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.16 E-value=2.2e-11 Score=143.20 Aligned_cols=200 Identities=25% Similarity=0.313 Sum_probs=130.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc-
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 888 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L- 888 (1119)
..+|++|+|....+..+.+.+.. .......|||.|++||||..+|++|-+.. +.|||.+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 56899999999988888887652 12334679999999999999999997766 789999999763
Q ss_pred ----ccccccchHHH--------HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCc
Q 001227 889 ----TSKWFGEGEKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 956 (1119)
Q Consensus 889 ----~s~~~G~~e~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~ 956 (1119)
.+..||..... -...|+.|.. +.||||||..| +..-|..+.+++++-...--|-....+.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCceee
Confidence 44455532211 2234444444 79999999887 4456667777777655444444333467
Q ss_pred cEEEEEecCCCCCCcHHHHh---------ccccccccCCCCHHHHHH----HHHHHHhhc----ccC----ChhcHHHHH
Q 001227 957 RVLVLAATNRPFDLDEAVVR---------RLPRRLMVNLPDAPNREK----IIRVILAKE----ELA----SDVDLEGIA 1015 (1119)
Q Consensus 957 ~VlVIaTTN~p~~Ld~aLlr---------RF~~~I~v~lPd~eeR~e----ILk~ll~k~----~l~----~d~dl~~LA 1015 (1119)
+|.||||||+. +.+++.. |+ .++.+.+|...+|.+ +..+++.+. +.. ++..+..|.
T Consensus 381 DVRIIAATN~n--L~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~ 457 (560)
T COG3829 381 DVRIIAATNRN--LEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLL 457 (560)
T ss_pred EEEEEeccCcC--HHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHH
Confidence 89999999973 3333332 45 467788999888865 344444431 111 122223333
Q ss_pred HHcCCCcHHHHHHHHHHHHh
Q 001227 1016 NMADGYSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 1016 ~~TeGysg~DL~~L~~~Aa~ 1035 (1119)
+..=--+.++|.|++.+|+.
T Consensus 458 ~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 458 RYDWPGNVRELENVIERAVN 477 (560)
T ss_pred hCCCCchHHHHHHHHHHHHh
Confidence 32212245677777777764
No 172
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=7.8e-10 Score=135.88 Aligned_cols=183 Identities=22% Similarity=0.279 Sum_probs=124.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 880 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~f------------ 880 (1119)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 46899999999999999887762 12335689999999999999999999885421
Q ss_pred -------------EEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhh
Q 001227 881 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 943 (1119)
Q Consensus 881 -------------i~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~L 943 (1119)
+.++... ......++.+...+.. ....||||||+|.|- ....+.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHH
Confidence 2222110 1112334554443332 224699999999882 1223445
Q ss_pred hhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCc
Q 001227 944 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1022 (1119)
Q Consensus 944 l~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGys 1022 (1119)
+..++.. ...+++|.+++..+.+.+.+++|+ ..+.|..++..+...++...+.+.++. ++..+..|+..+.| +
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 5555442 245666777777778888899998 568899999999999999888776643 45557788888876 4
Q ss_pred HHHHHHHHHH
Q 001227 1023 GSDLKNLCVT 1032 (1119)
Q Consensus 1023 g~DL~~L~~~ 1032 (1119)
.+++.++++.
T Consensus 215 lr~al~~Lek 224 (585)
T PRK14950 215 MRDAENLLQQ 224 (585)
T ss_pred HHHHHHHHHH
Confidence 4455444443
No 173
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.5e-09 Score=126.29 Aligned_cols=167 Identities=20% Similarity=0.312 Sum_probs=113.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 926 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 926 (1119)
...++||||.|.|||+|++|++++. +..++++....++..++......-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4569999999999999999999887 34577777766655544332222223455555 4479999999998644
Q ss_pred CCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHh
Q 001227 927 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 1001 (1119)
Q Consensus 927 r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~ 1001 (1119)
.. .++....+++.+.. ..+-+|+.+...|.. +.+.+++||. ..+.+..|+.+.|..||+....
T Consensus 191 ~~---~qeefFh~FN~l~~---------~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ER---TQEEFFHTFNALLE---------NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hh---HHHHHHHHHHHHHh---------cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 32 35666677776652 233455555556654 4589999985 4677899999999999999777
Q ss_pred hcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 001227 1002 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1033 (1119)
Q Consensus 1002 k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~A 1033 (1119)
...+. ++..+.-+|..... +.++|..++...
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l 290 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRL 290 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHH
Confidence 76554 45556677776553 445555444433
No 174
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.13 E-value=2.3e-10 Score=129.81 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=99.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc--cccchH----------HHHHHHHHHHHhcCCeEEEEccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVVFVDEV 920 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~--~~G~~e----------~~I~~lF~~A~k~~PsILfIDEI 920 (1119)
++|||.||||||||++|+.+|..++.+++.+++...... .+|... ......+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999998653332 334311 122334555554 4588999999
Q ss_pred cccccCCCCCchhHHHHHHHHh-hhhhccCC--cccCCccEEEEEecCCCC------------CCcHHHHhccccccccC
Q 001227 921 DSMLGRRENPGEHEAMRKMKNE-FMVNWDGL--RTKDKERVLVLAATNRPF------------DLDEAVVRRLPRRLMVN 985 (1119)
Q Consensus 921 D~L~~~r~s~~~~~~l~~ll~~-Ll~~ldgl--~~k~~~~VlVIaTTN~p~------------~Ld~aLlrRF~~~I~v~ 985 (1119)
|.. ++..+..+..+++. -...+.+. .-.....++||||+|+.. .++++++.||..++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 976 33444455555542 11112111 111235799999999853 57899999997778899
Q ss_pred CCCHHHHHHHHHHHHh
Q 001227 986 LPDAPNREKIIRVILA 1001 (1119)
Q Consensus 986 lPd~eeR~eILk~ll~ 1001 (1119)
.|+.++-.+|+.....
T Consensus 219 Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 219 YLEHDNEAAIVLAKAK 234 (327)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 9999999999887643
No 175
>PHA02244 ATPase-like protein
Probab=99.12 E-value=7.3e-10 Score=127.17 Aligned_cols=130 Identities=19% Similarity=0.261 Sum_probs=83.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc---cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF---GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 929 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~---G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s 929 (1119)
.+|||+||||||||++|+++|..++.+|+.++.-.-..... .........-|..|.+ ..++||||||+.+ +
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a-----~ 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDAS-----I 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcC-----C
Confidence 46999999999999999999999999999998421000111 1111122223444433 4589999999977 2
Q ss_pred CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-----------CCCcHHHHhccccccccCCCCH
Q 001227 930 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----------FDLDEAVVRRLPRRLMVNLPDA 989 (1119)
Q Consensus 930 ~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p-----------~~Ld~aLlrRF~~~I~v~lPd~ 989 (1119)
+..+..+..++......+.+-......++.+|+|+|.+ ..|++++++|| ..+.++.|+.
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 23333444444322211112111224678999999973 57899999999 5789999883
No 176
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2.8e-09 Score=131.20 Aligned_cols=182 Identities=20% Similarity=0.256 Sum_probs=128.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 878 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 878 (1119)
..+|++|+|++.+++.|...+.. .+.+..+|||||+|+|||++|+.+|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 46899999999999999998762 233456999999999999999999998753
Q ss_pred -----------cEEEEecCccccccccchHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHHHHhh
Q 001227 879 -----------NFINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 943 (1119)
Q Consensus 879 -----------~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~~~l~~ll~~L 943 (1119)
+++.+++.. ......++.+...+...+ ..|++|||+|.|- ....+.|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naL 141 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAF 141 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHH
Confidence 233333321 111345666666554322 3599999999882 1233455
Q ss_pred hhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCc
Q 001227 944 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1022 (1119)
Q Consensus 944 l~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGys 1022 (1119)
+..++.. +...++|.+|+.+..+-+++++|+ ..+.|..++.++-..+++..+.++++. ++..++.|+..+.|-
T Consensus 142 LK~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gd- 215 (614)
T PRK14971 142 LKTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGG- 215 (614)
T ss_pred HHHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 5555542 245667777777788999999998 679999999999999999988887765 444578888888764
Q ss_pred HHHHHHHHH
Q 001227 1023 GSDLKNLCV 1031 (1119)
Q Consensus 1023 g~DL~~L~~ 1031 (1119)
.+++.+++.
T Consensus 216 lr~al~~Le 224 (614)
T PRK14971 216 MRDALSIFD 224 (614)
T ss_pred HHHHHHHHH
Confidence 344444433
No 177
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.11 E-value=3.5e-10 Score=131.63 Aligned_cols=202 Identities=23% Similarity=0.273 Sum_probs=137.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc-
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 888 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L- 888 (1119)
...+.+|+|....+.++.+.+.. . ......|||.|++||||..+|++|-+.. +.||+++||+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-------V-----A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-------V-----AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-------H-----hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 56778999999999999887763 1 2233579999999999999999998776 689999999764
Q ss_pred ----ccccccchHHHHHHHHHHHHhcC--------CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCc
Q 001227 889 ----TSKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 956 (1119)
Q Consensus 889 ----~s~~~G~~e~~I~~lF~~A~k~~--------PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~ 956 (1119)
.++.||+ .+..|.-|.... .+.||+|||..| +...|..+.+++++--.+--|-...-+.
T Consensus 287 esLlESELFGH----eKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 287 ESLLESELFGH----EKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred hHHHHHHHhcc----cccccccchhccCcceeecCCCeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 4455664 344444444332 279999999887 5566777777777654443333333357
Q ss_pred cEEEEEecCCCCCCcHHHHh-ccc-------cccccCCCCHHHHHH----HHHHHHhh----cccC----ChhcHHHHHH
Q 001227 957 RVLVLAATNRPFDLDEAVVR-RLP-------RRLMVNLPDAPNREK----IIRVILAK----EELA----SDVDLEGIAN 1016 (1119)
Q Consensus 957 ~VlVIaTTN~p~~Ld~aLlr-RF~-------~~I~v~lPd~eeR~e----ILk~ll~k----~~l~----~d~dl~~LA~ 1016 (1119)
.|.|||+||+ +|.+++.. +|. .++.+.+|...+|.+ +.++|+++ .+.. +...++.|..
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 8999999997 45555555 332 356677888888764 34444444 2221 2223444444
Q ss_pred HcCCCcHHHHHHHHHHHHhhh
Q 001227 1017 MADGYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 1017 ~TeGysg~DL~~L~~~Aa~~a 1037 (1119)
..---+.++|+++++.|+..|
T Consensus 436 y~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 443447789999999999855
No 178
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.09 E-value=8.4e-10 Score=136.71 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=106.0
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------------------
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 876 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el------------------ 876 (1119)
.|.+|+|++.++..|.-.... ....+|||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~--------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD--------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC--------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 377899999999887654431 112479999999999999999999887
Q ss_pred -----------------CCcEEEEecCccccccccch--HHHH--------HHHHHHHHhcCCeEEEEccccccccCCCC
Q 001227 877 -----------------GANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEVDSMLGRREN 929 (1119)
Q Consensus 877 -----------------g~~fi~V~~s~L~s~~~G~~--e~~I--------~~lF~~A~k~~PsILfIDEID~L~~~r~s 929 (1119)
..||+.+.+.......+|.. +..+ ..++..| ..+|||||||+.+ +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-----~ 139 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-----D 139 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-----C
Confidence 35677766654444444432 1111 1111122 2379999999988 3
Q ss_pred CchhHHHHHHHHhhh--hhccCCcccCCccEEEEEecCCC-CCCcHHHHhccccccccCCCC-HHHHHHHHHHHHh
Q 001227 930 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLPD-APNREKIIRVILA 1001 (1119)
Q Consensus 930 ~~~~~~l~~ll~~Ll--~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~v~lPd-~eeR~eILk~ll~ 1001 (1119)
...+..+..++++-. ....+.....+.++++|+|+|.. ..+.++++.||+..+.++.|. .+++.++++..+.
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 333333333333221 11233333334679999999864 468899999999777776654 6778888876543
No 179
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.9e-09 Score=121.73 Aligned_cols=199 Identities=22% Similarity=0.282 Sum_probs=128.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecCcccccc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKW 892 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-----~fi~V~~s~L~s~~ 892 (1119)
.+.+.++.++++...+...+. ...|.+++++||||||||.+++.+++++.- .++++||..+.+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~----------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR----------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc----------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 478889999999887664332 123356999999999999999999998843 38999996533221
Q ss_pred ---------------ccc-hHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCC
Q 001227 893 ---------------FGE-GEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 955 (1119)
Q Consensus 893 ---------------~G~-~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~ 955 (1119)
.|- ..+....+++...+ ...-||+|||+|.|....+ .++..|....... .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~----~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGEN----K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcccc----c
Confidence 111 12233344444433 3356888999999974432 2334443332222 4
Q ss_pred ccEEEEEecCCC---CCCcHHHHhccc-cccccCCCCHHHHHHHHHHHHhhc---ccCChhcHHHHHHHc---CCCcHHH
Q 001227 956 ERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMA---DGYSGSD 1025 (1119)
Q Consensus 956 ~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~v~lPd~eeR~eILk~ll~k~---~l~~d~dl~~LA~~T---eGysg~D 1025 (1119)
.++.+|+.+|.. +.+++.+.++|. ..|.|++.+.+|..+|++...... ...++.-++.+|... .| ..+-
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 678999999875 478888888763 458999999999999999987652 122333344444333 33 2233
Q ss_pred HHHHHHHHHhhhHHH
Q 001227 1026 LKNLCVTAAHCPIRE 1040 (1119)
Q Consensus 1026 L~~L~~~Aa~~airr 1040 (1119)
-..+|+.|+..|-++
T Consensus 234 aidilr~A~eiAe~~ 248 (366)
T COG1474 234 AIDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHHHhh
Confidence 345677777766654
No 180
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.09 E-value=3.1e-10 Score=133.70 Aligned_cols=205 Identities=21% Similarity=0.275 Sum_probs=134.1
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 889 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~-- 889 (1119)
.+.+++|....++++.+.+.. +......|||+|++||||..+|++|-... +.||+.+||+.+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~k------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK------------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 466899999999999887763 12233579999999999999999997766 6799999997643
Q ss_pred ---cccccchHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEE
Q 001227 890 ---SKWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 959 (1119)
Q Consensus 890 ---s~~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~Vl 959 (1119)
+..||+... .-...|+.|.. +.||||||..| +...|..+.+++++-....-|-...-+.+|.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 335553321 12235666655 89999999988 4455666666666554444444334457899
Q ss_pred EEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhh----ccc-CChhcHHHHHHHcC-CC-
Q 001227 960 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EEL-ASDVDLEGIANMAD-GY- 1021 (1119)
Q Consensus 960 VIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k----~~l-~~d~dl~~LA~~Te-Gy- 1021 (1119)
||++||.. ..+-+.+.-|+ .++.+.+|...+|.+ ++++++++ .+. .....-+.++.+.. .|
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 357 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWP 357 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999863 12223333466 578899999999876 45555544 211 13333444444333 22
Q ss_pred -cHHHHHHHHHHHHhhhHHH
Q 001227 1022 -SGSDLKNLCVTAAHCPIRE 1040 (1119)
Q Consensus 1022 -sg~DL~~L~~~Aa~~airr 1040 (1119)
+.++|+|+++.++..+-..
T Consensus 358 GNVREL~N~ver~~il~~~~ 377 (464)
T COG2204 358 GNVRELENVVERAVILSEGP 377 (464)
T ss_pred hHHHHHHHHHHHHHhcCCcc
Confidence 4467777777776655443
No 181
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.08 E-value=1.1e-09 Score=116.80 Aligned_cols=187 Identities=23% Similarity=0.301 Sum_probs=127.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CC----cEEEEecCc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GA----NFINISMSS 887 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-g~----~fi~V~~s~ 887 (1119)
...+.||+|.++..+.|.-... .| ..++++|.||||||||+-+.++|+++ |- -+.++|.++
T Consensus 23 P~~l~dIVGNe~tv~rl~via~-----------~g---nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK-----------EG---NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH-----------cC---CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 3467899999999999877554 22 22489999999999999999999997 32 356777766
Q ss_pred cccccccchHHHHHHHHHHHHh-cCC---eEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 001227 888 ITSKWFGEGEKYVKAVFSLASK-IAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 963 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A~k-~~P---sILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaT 963 (1119)
-.+- +.....+ ..|..-+- .+| .||++||+|++ ..+.++++++.+.-.. ....+..+
T Consensus 89 eRGI--DvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFala 149 (333)
T KOG0991|consen 89 ERGI--DVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALA 149 (333)
T ss_pred cccc--HHHHHHH-HHHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhh
Confidence 3221 1111122 23333322 233 59999999998 4567888888876542 33567778
Q ss_pred cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 001227 964 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1033 (1119)
Q Consensus 964 TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~A 1033 (1119)
+|..+.+-+.+.+|+ -.+.+...+..+...-+....+.+.+. .+.-++.+.-..+|.....|.+|....
T Consensus 150 CN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 150 CNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTV 219 (333)
T ss_pred hcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHh
Confidence 899889989999988 455566666665554444444554443 555678888888888887777775544
No 182
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.08 E-value=2.2e-09 Score=123.34 Aligned_cols=164 Identities=17% Similarity=0.258 Sum_probs=100.9
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 881 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-------g~~fi------ 881 (1119)
.|..|+|+++++..|.-.+.. ....++||.|++|+|||+|+++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 477899999999887554431 113579999999999999999999776 22221
Q ss_pred ---EEec-------------------Ccc-----ccccccchH--HH--------HHHHHHHHHhcCCeEEEEccccccc
Q 001227 882 ---NISM-------------------SSI-----TSKWFGEGE--KY--------VKAVFSLASKIAPSVVFVDEVDSML 924 (1119)
Q Consensus 882 ---~V~~-------------------s~L-----~s~~~G~~e--~~--------I~~lF~~A~k~~PsILfIDEID~L~ 924 (1119)
..+| .++ ....+|... .. -..++..| ..++||||||+.|
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L- 143 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLL- 143 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhC-
Confidence 0000 000 011222210 00 00122222 2389999999987
Q ss_pred cCCCCCchhHHHHHHHHhhh--hhccCCcccCCccEEEEEecCCCC-CCcHHHHhccccccccCCCCH-HHHHHHHHHHH
Q 001227 925 GRRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1000 (1119)
Q Consensus 925 ~~r~s~~~~~~l~~ll~~Ll--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~v~lPd~-eeR~eILk~ll 1000 (1119)
++..+..+..++.+-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.+..|.. ++|.+|++...
T Consensus 144 ----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 144 ----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred ----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 3233333333332211 112333333346789999998755 799999999998888888875 88999998743
No 183
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.07 E-value=9.9e-10 Score=126.02 Aligned_cols=176 Identities=17% Similarity=0.208 Sum_probs=104.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-----cccchHH-------HHHHHHHHHHhcCCeEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVVFV 917 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~-----~~G~~e~-------~I~~lF~~A~k~~PsILfI 917 (1119)
..|||+|++||||+++|++|.... +.||+.++|..+... .||.... .-...|..|. .++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEEe
Confidence 469999999999999999997665 579999999875332 2221100 1112344443 489999
Q ss_pred ccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhccccccccCCCCHH
Q 001227 918 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 990 (1119)
Q Consensus 918 DEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~e 990 (1119)
|||+.| +...+..+.++++.-.....+.....+.++.+|++|+.. ..+.+.+..|+. .+.+.+|...
T Consensus 100 dei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLR 173 (329)
T TIGR02974 100 DELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLR 173 (329)
T ss_pred CChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchh
Confidence 999988 333444444444332111111111223568999999753 234566667773 5678888888
Q ss_pred HHHH----HHHHHHhhc----cc-----CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001227 991 NREK----IIRVILAKE----EL-----ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 991 eR~e----ILk~ll~k~----~l-----~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~a 1037 (1119)
+|.+ +++.++.+. .. .++..++.|....=.-+.++|+++++.|+..+
T Consensus 174 eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 174 ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 8765 444444331 11 12222333333332335678888887776644
No 184
>PRK09087 hypothetical protein; Validated
Probab=99.06 E-value=4.3e-09 Score=114.69 Aligned_cols=137 Identities=19% Similarity=0.216 Sum_probs=93.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 932 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 932 (1119)
+.++|+||+|+|||+|++++++..++.++.. ..+.. .++..... .+|+|||++.+- ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCC------CC
Confidence 3599999999999999999998876654333 22111 11111111 589999999761 22
Q ss_pred hHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-
Q 001227 933 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA- 1006 (1119)
Q Consensus 933 ~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k~~l~- 1006 (1119)
++.+..+++.+.. .++.+||+++..|.. ..+.+++||. ..+.+..|+.++|.++++..+....+.
T Consensus 103 ~~~lf~l~n~~~~---------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVRQ---------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHHh---------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4445555555541 234566666655432 3578898884 678899999999999999999876553
Q ss_pred ChhcHHHHHHHcCC
Q 001227 1007 SDVDLEGIANMADG 1020 (1119)
Q Consensus 1007 ~d~dl~~LA~~TeG 1020 (1119)
++..++.|+....|
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 56667888887764
No 185
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.05 E-value=1.1e-09 Score=125.58 Aligned_cols=201 Identities=19% Similarity=0.177 Sum_probs=118.9
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 890 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s- 890 (1119)
.+++++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.||+.++|..+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 3567888888888888877631 1123469999999999999999997665 57999999987632
Q ss_pred ----ccccchHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEE
Q 001227 891 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 959 (1119)
Q Consensus 891 ----~~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~Vl 959 (1119)
.+||.... .....|..|. .++|||||||.| +...+..+..+++.-.....+-....+.++.
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATA-----PMLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccC---CCeEEeCChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 22332110 0112343333 489999999998 3333333333333211111111111124688
Q ss_pred EEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----ccC--Chhc---HHHHHHHcC
Q 001227 960 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELA--SDVD---LEGIANMAD 1019 (1119)
Q Consensus 960 VIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k~----~l~--~d~d---l~~LA~~Te 1019 (1119)
||+||+.. ..+.+.+..||. .+.+.+|...+|.+ ++..++... ... ..++ +..|....=
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~W 222 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRW 222 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCC
Confidence 99988753 345567777883 46788899888865 444444332 111 1222 333333332
Q ss_pred CCcHHHHHHHHHHHHhh
Q 001227 1020 GYSGSDLKNLCVTAAHC 1036 (1119)
Q Consensus 1020 Gysg~DL~~L~~~Aa~~ 1036 (1119)
--+.++|+++++.|+..
T Consensus 223 PGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 223 PGNIRELKNVVERSVYR 239 (326)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 33557788887777654
No 186
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=7.4e-09 Score=117.91 Aligned_cols=172 Identities=18% Similarity=0.283 Sum_probs=115.8
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecC
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMS 886 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~--------fi~V~~s 886 (1119)
+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+-+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 689999999999999887752 2344678999999999999999999987332 2233221
Q ss_pred ccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 001227 887 SITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 962 (1119)
Q Consensus 887 ~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIa 962 (1119)
.+.. -.-..++.+...+.. ....|++||++|.|- ....+.|+..++. ++..+++|.
T Consensus 69 --~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEe----pp~~t~~il 128 (313)
T PRK05564 69 --NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEE----PPKGVFIIL 128 (313)
T ss_pred --cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCCCeEEEE
Confidence 1111 112345555554432 234699999999881 1234455666554 234566666
Q ss_pred ecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 001227 963 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 963 TTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg 1023 (1119)
+|+.++.+.+++++|+ ..+.+..|+.++...+++..+.. .++..++.++..+.|-.+
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHH
Confidence 7777899999999999 68899999999887777655431 234445667777766444
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.5e-09 Score=131.99 Aligned_cols=182 Identities=22% Similarity=0.384 Sum_probs=137.0
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 884 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V~ 884 (1119)
.++-++|.++-+..+.+.+.. +..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 456689999888888887762 223467899999999999999999876 56788888
Q ss_pred cCcccc--ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch-hHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001227 885 MSSITS--KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVL 961 (1119)
Q Consensus 885 ~s~L~s--~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~-~~~l~~ll~~Ll~~ldgl~~k~~~~VlVI 961 (1119)
++.+.. +|-|+.|..++.+.....+..+.||||||||.+.+.....+. ..+.+-+.-.| .++.+.+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----------hcCCeEEE
Confidence 887764 578999999999999999988999999999999876654332 22222222221 23668889
Q ss_pred EecCC-----CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-----ChhcHHHHHHHcCCC
Q 001227 962 AATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1021 (1119)
Q Consensus 962 aTTN~-----p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-----~d~dl~~LA~~TeGy 1021 (1119)
|+|.- .-.-|+++-||| ..|.+.-|+.++-..||+.+-.++... .|..+...+..+..|
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 88853 346689999999 678999999999999999887664322 344466666666555
No 188
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.01 E-value=8.9e-09 Score=115.72 Aligned_cols=129 Identities=22% Similarity=0.314 Sum_probs=83.1
Q ss_pred CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC------------CCCCcHHHHhccc
Q 001227 912 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 979 (1119)
Q Consensus 912 PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF~ 979 (1119)
|+||||||++.| .-....++++. ++. +-.+ +||.+||+ |+-++..++.|.
T Consensus 292 pGVLFIDEvHmL-----DIE~FsFlnrA-------lEs----e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHML-----DIECFSFLNRA-------LES----ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhh-----hHHHHHHHHHH-------hhc----ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 789999999877 11111222222 221 1133 55556664 788899999998
Q ss_pred cccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccC
Q 001227 980 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1058 (1119)
Q Consensus 980 ~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~ 1058 (1119)
.+|...+.+.++.++|++.....+.+. ++..++.|+.....-+-+--.+|+.-|...|-++
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------------------ 415 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------------------ 415 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------------------
Confidence 678888899999999999998887655 4555777777665545444445555444444332
Q ss_pred CCCCCCCCccccccHHHHHHHHHHhc
Q 001227 1059 SPPLYSSVDVRPLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1059 ~~~~~~~~~~r~Lt~eDF~~Al~kv~ 1084 (1119)
....+..+|++.|.+-+.
T Consensus 416 --------g~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 416 --------GSKRVEVEDVERAKELFL 433 (450)
T ss_pred --------CCCeeehhHHHHHHHHHh
Confidence 124678888888876554
No 189
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=8.6e-09 Score=119.20 Aligned_cols=184 Identities=17% Similarity=0.156 Sum_probs=120.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEE--
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINI-- 883 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------~fi~V-- 883 (1119)
...|++++|++.+.+.|...+.. .+-+..+||+||+|+|||++|+.+|+.+.+ +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 35788999999999999998763 233467999999999999999999998854 11100
Q ss_pred --ec-----------Cccc--cccccc---------hHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchhHH
Q 001227 884 --SM-----------SSIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEA 935 (1119)
Q Consensus 884 --~~-----------s~L~--s~~~G~---------~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~~~~~ 935 (1119)
.| +++. ..-.+. ....++.+..... .....|++|||+|.| +
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----~------ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----N------ 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----C------
Confidence 11 0111 000000 1123444333322 223469999999988 2
Q ss_pred HHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHH
Q 001227 936 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1015 (1119)
Q Consensus 936 l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA 1015 (1119)
....+.++..++.. +.+.++|..|+.++.+.+.+++|+ ..+.++.|+.++-.++++....... .++..+..++
T Consensus 155 -~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 155 -RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred -HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 12234455555542 244566666777888899999999 6899999999999999987543322 2244467788
Q ss_pred HHcCCCcHHHHH
Q 001227 1016 NMADGYSGSDLK 1027 (1119)
Q Consensus 1016 ~~TeGysg~DL~ 1027 (1119)
..+.|.....+.
T Consensus 228 ~~s~G~pr~Al~ 239 (351)
T PRK09112 228 QRSKGSVRKALL 239 (351)
T ss_pred HHcCCCHHHHHH
Confidence 888776554443
No 190
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.00 E-value=1.1e-09 Score=133.27 Aligned_cols=206 Identities=20% Similarity=0.227 Sum_probs=123.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 889 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~ 889 (1119)
..+|++++|....++.+.+.+... ......|||+|++||||+++|++|.... +.||+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 357889999999998888877631 1223469999999999999999998875 5799999998763
Q ss_pred cc-----cccchHHH-------HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001227 890 SK-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 957 (1119)
Q Consensus 890 s~-----~~G~~e~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~ 957 (1119)
.. .||..... ....|..| ..++||||||+.| +...+..+.+++++-.....+-....+.+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----SPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----CHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 32 12211100 01113333 3489999999998 33334333333322111101111111246
Q ss_pred EEEEEecCCC-------CCCcHHHHhccccccccCCCCHHHHH----HHHHHHHhhcc----c---CChhcHHHHHHHcC
Q 001227 958 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEE----L---ASDVDLEGIANMAD 1019 (1119)
Q Consensus 958 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~----eILk~ll~k~~----l---~~d~dl~~LA~~Te 1019 (1119)
+.+|++|+.. ..+.+.+..|+. .+.+.+|...+|. .++..++.+.. . .++..++.|....=
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~W 410 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKW 410 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCC
Confidence 8899998753 234455666663 5667788877764 35555655421 1 12223444444432
Q ss_pred CCcHHHHHHHHHHHHhhhHH
Q 001227 1020 GYSGSDLKNLCVTAAHCPIR 1039 (1119)
Q Consensus 1020 Gysg~DL~~L~~~Aa~~air 1039 (1119)
.-+.++|+++++.|+..+-.
T Consensus 411 PGNvrEL~~v~~~a~~~~~~ 430 (534)
T TIGR01817 411 PGNVRELENCLERTATLSRS 430 (534)
T ss_pred CChHHHHHHHHHHHHHhCCC
Confidence 34668888888888765433
No 191
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.00 E-value=2.3e-09 Score=129.80 Aligned_cols=202 Identities=20% Similarity=0.274 Sum_probs=121.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 882 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~e-----------lg~~fi~ 882 (1119)
.+|++++|....++.+.+.+.. +. .....|||+|++||||+++|++|-+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------YA-----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 3688999999988888887753 11 12357999999999999999999876 3679999
Q ss_pred EecCcccc-----ccccchHH--------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccC
Q 001227 883 ISMSSITS-----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 949 (1119)
Q Consensus 883 V~~s~L~s-----~~~G~~e~--------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldg 949 (1119)
+||+.+.. ..||..+. .-..+|+.|.. +.||||||+.| +...+..+.+++++-....-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 99987533 23332211 11235555543 89999999988 334444444444332211111
Q ss_pred CcccCCccEEEEEecCCCC-------CCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----ccC-ChhcH--
Q 001227 950 LRTKDKERVLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELA-SDVDL-- 1011 (1119)
Q Consensus 950 l~~k~~~~VlVIaTTN~p~-------~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k~----~l~-~d~dl-- 1011 (1119)
-....+.++.+|++|+..- .+.+.+.-|+ ..+.+.+|...+|.+ +++.++.+. ... +...+
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 1111235679999997631 1223344455 357788999888864 455555542 111 11111
Q ss_pred -----HHHHHHcCCCcHHHHHHHHHHHHhh
Q 001227 1012 -----EGIANMADGYSGSDLKNLCVTAAHC 1036 (1119)
Q Consensus 1012 -----~~LA~~TeGysg~DL~~L~~~Aa~~ 1036 (1119)
+.|....=-.+.++|+++++.++..
T Consensus 435 ~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 435 LQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 1122222123567888888887753
No 192
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.00 E-value=1.5e-09 Score=131.21 Aligned_cols=202 Identities=22% Similarity=0.285 Sum_probs=120.6
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 890 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s 890 (1119)
.+|++++|....++.+.+.+.. +. .....|||+|++||||+++|++|.+.. +.||+.+||..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YA-----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5688999999988888887753 11 123579999999999999999998765 67999999987532
Q ss_pred -----ccccchHH--------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001227 891 -----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 957 (1119)
Q Consensus 891 -----~~~G~~e~--------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~ 957 (1119)
..||..+. .-..+|+.|.. +.||||||+.| +...+..+.+++++-....-|-....+.+
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 23332111 11234555543 89999999988 33444444444443221111111112346
Q ss_pred EEEEEecCCCC-------CCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----cC-ChhcHHH-------H
Q 001227 958 VLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA-SDVDLEG-------I 1014 (1119)
Q Consensus 958 VlVIaTTN~p~-------~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k~~----l~-~d~dl~~-------L 1014 (1119)
+.+|++|+..- .+.+.+..|+ ..+.+.+|...+|.+ ++..++.+.. +. ++..+.. |
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHH
Confidence 78999997641 2223333455 357788999888865 4455554421 11 1111222 2
Q ss_pred HHHcCCCcHHHHHHHHHHHHhh
Q 001227 1015 ANMADGYSGSDLKNLCVTAAHC 1036 (1119)
Q Consensus 1015 A~~TeGysg~DL~~L~~~Aa~~ 1036 (1119)
....=-.+.++|+++++.++..
T Consensus 428 ~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 428 QRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HhCCCCchHHHHHHHHHHHHHh
Confidence 2222223557888888877653
No 193
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.99 E-value=1.3e-08 Score=109.40 Aligned_cols=189 Identities=22% Similarity=0.301 Sum_probs=133.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 889 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~ 889 (1119)
.+.+.+|.|.+.+++.|.+.... |.+ ..|..+|||+|..||||++|++|+.++. +..+++|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 36788999999999999886653 333 3477899999999999999999998877 6778888866643
Q ss_pred cccccchHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 890 SKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 890 s~~~G~~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.+-.+++..+..+ .-|||+|++- | ..+ .. ....|...++|-....+.+|++.||+|+.+
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLS--F----e~g-d~----~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLS--F----EEG-DD----AYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCC--C----CCC-ch----HHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 2445666665543 4699999983 1 111 11 122344556776666778999999999865
Q ss_pred CCcH----------------------HHHhccccccccCCCCHHHHHHHHHHHHhhcccCC-hhcH--H--HHHHHcCCC
Q 001227 969 DLDE----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDL--E--GIANMADGY 1021 (1119)
Q Consensus 969 ~Ld~----------------------aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~-d~dl--~--~LA~~TeGy 1021 (1119)
.|++ .+-.||+..+.|..++.++-.+|+..+.+...+.- +..+ + +-|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4442 22338999999999999999999999999887663 2222 2 234444567
Q ss_pred cHHHHHHHHH
Q 001227 1022 SGSDLKNLCV 1031 (1119)
Q Consensus 1022 sg~DL~~L~~ 1031 (1119)
||+--.+.++
T Consensus 266 SGR~A~QF~~ 275 (287)
T COG2607 266 SGRVAWQFIR 275 (287)
T ss_pred ccHhHHHHHH
Confidence 7754444433
No 194
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.99 E-value=2e-09 Score=123.46 Aligned_cols=143 Identities=26% Similarity=0.406 Sum_probs=97.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc--ccccchHHHHH----HHHHHHHh-cCC---eEEEEccccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGEKYVK----AVFSLASK-IAP---SVVFVDEVDS 922 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s--~~~G~~e~~I~----~lF~~A~k-~~P---sILfIDEID~ 922 (1119)
.++||.||||||||+||+++|..++.+|+.+.|..-+. +.+|...-... ..|..... ... +|+++|||++
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 47999999999999999999999999999999964221 22232111110 00000000 001 4999999986
Q ss_pred cccCCCCCchhHHHHHHHHhhhhhccCCc-ccCCccEEEEEecC-----CCCCCcHHHHhccccccccCCC-CHHHHHHH
Q 001227 923 MLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATN-----RPFDLDEAVVRRLPRRLMVNLP-DAPNREKI 995 (1119)
Q Consensus 923 L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~-~k~~~~VlVIaTTN-----~p~~Ld~aLlrRF~~~I~v~lP-d~eeR~eI 995 (1119)
. ++..+..+..++++....+.+.. ..-+.+++||+|+| ....+++++++||...+.++.| +..+...+
T Consensus 124 a-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 124 A-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred C-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence 5 45566666677777666666666 55567899999999 4567899999999888999999 45555555
Q ss_pred HHHHH
Q 001227 996 IRVIL 1000 (1119)
Q Consensus 996 Lk~ll 1000 (1119)
+....
T Consensus 199 ~~~~~ 203 (329)
T COG0714 199 LARVG 203 (329)
T ss_pred HHhCc
Confidence 54443
No 195
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.98 E-value=4.4e-09 Score=131.74 Aligned_cols=204 Identities=21% Similarity=0.274 Sum_probs=123.6
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 890 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s 890 (1119)
..|++++|....++.+.+.+... .....+|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV------------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 46788999998888888766531 1123479999999999999999998765 67999999987532
Q ss_pred -----ccccchH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccE
Q 001227 891 -----KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 958 (1119)
Q Consensus 891 -----~~~G~~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~V 958 (1119)
..+|... ......|+.|. .++||||||+.| +...+..+.+++++-.....+-....+.++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 2333211 11123444443 489999999988 333344444444332111111111123578
Q ss_pred EEEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----c----CChhcHHHHHHHcC
Q 001227 959 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMAD 1019 (1119)
Q Consensus 959 lVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k~~----l----~~d~dl~~LA~~Te 1019 (1119)
.+|++|+.. ..+...+..|+ ..+.+.+|...+|.+ +++.++.+.. . .++..++.|....=
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~W 591 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEW 591 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 999999763 12334444455 356788999888865 4455544321 1 12223344444332
Q ss_pred CCcHHHHHHHHHHHHhhhH
Q 001227 1020 GYSGSDLKNLCVTAAHCPI 1038 (1119)
Q Consensus 1020 Gysg~DL~~L~~~Aa~~ai 1038 (1119)
-.+.++|+++++.|+..+-
T Consensus 592 PGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 592 PGNVRELENVIERAVLLTR 610 (686)
T ss_pred CCcHHHHHHHHHHHHHhCC
Confidence 3366788888888876443
No 196
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.97 E-value=3.5e-09 Score=128.26 Aligned_cols=204 Identities=17% Similarity=0.223 Sum_probs=124.3
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 891 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~ 891 (1119)
.+.+++|....++.+.+.+.. . ......|||+|++||||+++|++|.... +.||+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~----------~--a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV----------V--AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH----------H--hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 456789998888888887763 1 1223579999999999999999998875 579999999876432
Q ss_pred -----cccchHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEE
Q 001227 892 -----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 959 (1119)
Q Consensus 892 -----~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~Vl 959 (1119)
.||.... .....|..|. .++|||||||.| +...+..+.+++++-....-+-....+.++.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----PLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----CHHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 2332111 0112344443 489999999998 3333444444333221111111111235789
Q ss_pred EEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----c----CChhcHHHHHHHcCC
Q 001227 960 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMADG 1020 (1119)
Q Consensus 960 VIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k~~----l----~~d~dl~~LA~~TeG 1020 (1119)
+|++|+.. ..+.+.+..|+ ..+.+.+|...+|.+ ++++++.+.. . .++..+..|....=-
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 403 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWP 403 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999763 23555565666 357788999888864 4444444321 1 122223444444333
Q ss_pred CcHHHHHHHHHHHHhhhHH
Q 001227 1021 YSGSDLKNLCVTAAHCPIR 1039 (1119)
Q Consensus 1021 ysg~DL~~L~~~Aa~~air 1039 (1119)
.+.++|+++++.|+..+..
T Consensus 404 GNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 404 GNVRELEHVISRAALLARA 422 (509)
T ss_pred CcHHHHHHHHHHHHHhcCC
Confidence 4668899988888775543
No 197
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=1.2e-08 Score=118.53 Aligned_cols=181 Identities=20% Similarity=0.191 Sum_probs=118.4
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-----------E
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-----------I 881 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~f-----------i 881 (1119)
..++++|+|++.+++.|.+.+.. .+.+..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 45789999999999999988763 23456799999999999999999999873210 0
Q ss_pred E---E-ec-----------Cccccc---cccc--------hHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCc
Q 001227 882 N---I-SM-----------SSITSK---WFGE--------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPG 931 (1119)
Q Consensus 882 ~---V-~~-----------s~L~s~---~~G~--------~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~ 931 (1119)
. + .| +++.-- +.+. .-..++.+-..+. ...+.|++|||+|.+ +
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~-- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----N-- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----C--
Confidence 0 0 00 111000 0000 1233555444433 234679999999987 2
Q ss_pred hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcH
Q 001227 932 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL 1011 (1119)
Q Consensus 932 ~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl 1011 (1119)
....+.|+..++.. +...++|.+|+.++.+.+.+++|+ ..+.++.|+.++-.+++...... ..+..+
T Consensus 155 -----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 22334555555542 245677788888888999999998 68899999999998888765321 222233
Q ss_pred HHHHHHcCCCcHHHH
Q 001227 1012 EGIANMADGYSGSDL 1026 (1119)
Q Consensus 1012 ~~LA~~TeGysg~DL 1026 (1119)
..++..+.|-.+..+
T Consensus 222 ~~l~~~s~Gsp~~Al 236 (365)
T PRK07471 222 AALAALAEGSVGRAL 236 (365)
T ss_pred HHHHHHcCCCHHHHH
Confidence 567777777555433
No 198
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.94 E-value=2.1e-10 Score=114.47 Aligned_cols=112 Identities=27% Similarity=0.412 Sum_probs=67.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc--cccch------HHHHHHHHHHHHhcCCeEEEEcccccccc
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEG------EKYVKAVFSLASKIAPSVVFVDEVDSMLG 925 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~--~~G~~------e~~I~~lF~~A~k~~PsILfIDEID~L~~ 925 (1119)
+|||+||||||||++|+.+|+.++.+++.+++...... .+|.. .......+..|.+ .+.|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 58999999999999999999999999999988652211 11110 0000011111111 4689999999865
Q ss_pred CCCCCchhHHHHHHHHhhhhhccCCc---------ccCCc------cEEEEEecCCCC----CCcHHHHhcc
Q 001227 926 RRENPGEHEAMRKMKNEFMVNWDGLR---------TKDKE------RVLVLAATNRPF----DLDEAVVRRL 978 (1119)
Q Consensus 926 ~r~s~~~~~~l~~ll~~Ll~~ldgl~---------~k~~~------~VlVIaTTN~p~----~Ld~aLlrRF 978 (1119)
+ ..++..++..++.-. ..... ++.+|+|+|+.. .+++++++||
T Consensus 78 ---~-------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---P-------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---C-------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 1 122333333322110 00111 499999999988 8999999998
No 199
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.94 E-value=4.2e-09 Score=127.89 Aligned_cols=205 Identities=22% Similarity=0.268 Sum_probs=121.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 889 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~ 889 (1119)
..+|++++|.....+.+.+.+.. +. .....|||+|++||||+++|+++-... +.||+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~-------~A-----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK-------LA-----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH-------Hh-----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 46899999998887777776642 11 112459999999999999999986654 4799999998764
Q ss_pred cc-----cccchH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001227 890 SK-----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 957 (1119)
Q Consensus 890 s~-----~~G~~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~ 957 (1119)
.. .||... .....+|+.|. .+.||||||+.| +...+..+.++++.-...-.+-......+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----SPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----CHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 32 233211 11123455544 389999999988 33344444444332111001111112356
Q ss_pred EEEEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhh----cccC-ChhcHHHHHHHcC--
Q 001227 958 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELA-SDVDLEGIANMAD-- 1019 (1119)
Q Consensus 958 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k----~~l~-~d~dl~~LA~~Te-- 1019 (1119)
+.||+||+.. ..+.+.+..|+. .+.+.+|...+|.+ +++.++.+ .... .....+.+.....
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~ 418 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG 418 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC
Confidence 8899988653 234456666773 47888898888764 33344433 2211 1223333332222
Q ss_pred -CCcHHHHHHHHHHHHhhhH
Q 001227 1020 -GYSGSDLKNLCVTAAHCPI 1038 (1119)
Q Consensus 1020 -Gysg~DL~~L~~~Aa~~ai 1038 (1119)
.-+.++|++++..|+..+-
T Consensus 419 WPGNvreL~nvl~~a~~~~~ 438 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQLE 438 (520)
T ss_pred CCCHHHHHHHHHHHHHHhCC
Confidence 2256788888888876543
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.93 E-value=5.2e-09 Score=100.72 Aligned_cols=127 Identities=33% Similarity=0.464 Sum_probs=81.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCccccc--------------cccchHHHHHHHHHHHHhcCCeEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVV 915 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~---fi~V~~s~L~s~--------------~~G~~e~~I~~lF~~A~k~~PsIL 915 (1119)
..++|+||||||||++++++|..+... ++.+++...... ...........++..|+...+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 888887654322 122345567788999998888999
Q ss_pred EEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-CCCCcHHHHhccccccccCCC
Q 001227 916 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNLP 987 (1119)
Q Consensus 916 fIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrRF~~~I~v~lP 987 (1119)
+|||++.+..... ............... ........+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ-----EALLLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH-----HHHHHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999998842211 111000000000000 012255788888886 344555555577766665543
No 201
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.92 E-value=1.7e-08 Score=106.31 Aligned_cols=144 Identities=18% Similarity=0.212 Sum_probs=97.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 906 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~------------------------fi~V~~s~L~s~~~G~~e~~I~~lF~~ 906 (1119)
.+..+||+||+|+|||++|+++++.+... +..+.... . ......++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 44679999999999999999999987432 22221110 0 0123455555666
Q ss_pred HHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccc
Q 001227 907 ASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 982 (1119)
Q Consensus 907 A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I 982 (1119)
+... ...||+|||+|.|- ....+.|+..++.. +....+|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 5542 34799999999882 11234455555542 234667777777789999999998 589
Q ss_pred ccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCC
Q 001227 983 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGY 1021 (1119)
Q Consensus 983 ~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGy 1021 (1119)
.+..|+.++..++++.. ++ ++..++.++..+.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGS 184 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCC
Confidence 99999999988888776 23 345577777777664
No 202
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.92 E-value=3.1e-09 Score=132.01 Aligned_cols=203 Identities=19% Similarity=0.238 Sum_probs=120.8
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc-
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 889 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~- 889 (1119)
.+|++++|.......+.+.+.... .....|||+|++||||+++|++|.+.. +.||+.+||..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 468899999888888777665311 122469999999999999999998875 4799999998753
Q ss_pred ----cccccch----HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001227 890 ----SKWFGEG----EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 961 (1119)
Q Consensus 890 ----s~~~G~~----e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVI 961 (1119)
+.++|.. .......|+.| ..++||||||+.| +...+..+.+++++-....-+-....+.++.||
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 2234321 00001123333 3489999999988 333444444444322111111111112468899
Q ss_pred EecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----c---CChhcHHHHHHHcCCCcH
Q 001227 962 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L---ASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 962 aTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k~~----l---~~d~dl~~LA~~TeGysg 1023 (1119)
+||+.. ..+.+.+.-|+ ..+.+.+|...+|.+ +++.++.+.. . .++..++.|....=.-+.
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 540 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChH
Confidence 999763 23334444455 357788999888854 4445544321 1 122334444444323466
Q ss_pred HHHHHHHHHHHhhh
Q 001227 1024 SDLKNLCVTAAHCP 1037 (1119)
Q Consensus 1024 ~DL~~L~~~Aa~~a 1037 (1119)
++|+++++.|+..+
T Consensus 541 reL~~~l~~~~~~~ 554 (638)
T PRK11388 541 FELRSVIENLALSS 554 (638)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877543
No 203
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.91 E-value=3.1e-08 Score=119.38 Aligned_cols=158 Identities=22% Similarity=0.335 Sum_probs=98.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHH--------HhcCCeEEEEccccccccC
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA--------SKIAPSVVFVDEVDSMLGR 926 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A--------~k~~PsILfIDEID~L~~~ 926 (1119)
+||+||||-|||+||+.||+++|+.++++|+++-.+. ..++.....| ...+|.+|+|||||--
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~------~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa--- 399 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA------PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA--- 399 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccH------HHHHHHHHHHHhhccccccCCCcceEEEecccCC---
Confidence 7999999999999999999999999999999874331 1222222222 1257899999999832
Q ss_pred CCCCchhHHHHHHHHhhhh----hccCCcccC----------CccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHH
Q 001227 927 RENPGEHEAMRKMKNEFMV----NWDGLRTKD----------KERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAP 990 (1119)
Q Consensus 927 r~s~~~~~~l~~ll~~Ll~----~ldgl~~k~----------~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~e 990 (1119)
...+.+ ++..++. +..|-.... .-.--||+.+|... .|+++. -|...++|..|...
T Consensus 400 -----~~~~Vd-vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s 471 (877)
T KOG1969|consen 400 -----PRAAVD-VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQS 471 (877)
T ss_pred -----cHHHHH-HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChh
Confidence 122222 2222222 111111100 01235788888654 355554 57888999999988
Q ss_pred HHHHHHHHHHhhcccCC-hhcHHHHHHHcCCCcHHHHHHHHHHH
Q 001227 991 NREKIIRVILAKEELAS-DVDLEGIANMADGYSGSDLKNLCVTA 1033 (1119)
Q Consensus 991 eR~eILk~ll~k~~l~~-d~dl~~LA~~TeGysg~DL~~L~~~A 1033 (1119)
-..+=|+.++..+++.- ...+..|+..|++ ||+.-++..
T Consensus 472 ~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtL 511 (877)
T KOG1969|consen 472 RLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTL 511 (877)
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHH
Confidence 87888888888877652 2335556666555 454444433
No 204
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.90 E-value=7.5e-10 Score=118.19 Aligned_cols=46 Identities=43% Similarity=0.666 Sum_probs=36.2
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.|.||.|++..|..|.-... + ..++||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999977554 1 2589999999999999999998655
No 205
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.90 E-value=2.4e-08 Score=121.04 Aligned_cols=175 Identities=23% Similarity=0.287 Sum_probs=101.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEE---EecCccccccc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFIN---ISMSSITSKWF 893 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-~fi~---V~~s~L~s~~~ 893 (1119)
+|.|++.++..+.-.+..-.. + ....+...+...+|||+|+||||||++|+++++.+.. .|+. .++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-K-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-c-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 578999988777554432110 0 0011111223347999999999999999999988743 2322 12222211111
Q ss_pred cc---hHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCC
Q 001227 894 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 967 (1119)
Q Consensus 894 G~---~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~l--dgl~~k~~~~VlVIaTTN~p 967 (1119)
.. .+..+ ...+..| ..++++|||++.+ +...+..+..++++-...+ .|....-+.++.||||+|+.
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 00 00000 0112222 2489999999988 3333444433333222111 23333345789999999975
Q ss_pred C-------------CCcHHHHhccccccc-cCCCCHHHHHHHHHHHHhh
Q 001227 968 F-------------DLDEAVVRRLPRRLM-VNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 968 ~-------------~Ld~aLlrRF~~~I~-v~lPd~eeR~eILk~ll~k 1002 (1119)
+ .|++++++||+..+. .+.|+.+.+.+|.++.+..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 3 689999999987544 5789999999999887643
No 206
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.89 E-value=1.2e-08 Score=125.37 Aligned_cols=142 Identities=19% Similarity=0.308 Sum_probs=93.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccchH--HHHH--------HHHHHHHhcCCeEEEEcc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK--------AVFSLASKIAPSVVFVDE 919 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~s~L~s~~~G~~e--~~I~--------~lF~~A~k~~PsILfIDE 919 (1119)
..+|||.|+||||||++|++++..+. .+|+.+.........+|... ..+. ..+..| ..++|||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccc
Confidence 35799999999999999999999875 46888876433333444321 0000 011112 237999999
Q ss_pred ccccccCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCCC---CCcHHHHhcccccccc-CCCCHHHHH
Q 001227 920 VDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRRLMV-NLPDAPNRE 993 (1119)
Q Consensus 920 ID~L~~~r~s~~~~~~l~~ll~~Ll~~l--dgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~~I~v-~lPd~eeR~ 993 (1119)
|+.+ ++..+..+..++++-...+ .|.....+.++.||+|+|..+ .|.++++.||...+.+ .+|+.++|.
T Consensus 93 i~rl-----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~ 167 (589)
T TIGR02031 93 ANLL-----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRV 167 (589)
T ss_pred hhhC-----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHH
Confidence 9988 3333444444443322212 233333346789999999865 7899999999876665 456788899
Q ss_pred HHHHHHHh
Q 001227 994 KIIRVILA 1001 (1119)
Q Consensus 994 eILk~ll~ 1001 (1119)
+|++.++.
T Consensus 168 eil~~~~~ 175 (589)
T TIGR02031 168 EIVRRERC 175 (589)
T ss_pred HHHHHHHH
Confidence 99988763
No 207
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=2.1e-08 Score=114.51 Aligned_cols=181 Identities=15% Similarity=0.234 Sum_probs=120.1
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEe
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 884 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~----------fi~V~ 884 (1119)
.|++|+|++.+++.|.+.+.. .+-+..+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 488999999999999998863 2334689999999999999999999887321 11111
Q ss_pred cCccc---------ccc--------cc--------chHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHH
Q 001227 885 MSSIT---------SKW--------FG--------EGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEA 935 (1119)
Q Consensus 885 ~s~L~---------s~~--------~G--------~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~ 935 (1119)
.+++. ++. .| -.-..++.+...+... ...|++||++|.| +
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----~------ 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----N------ 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----C------
Confidence 12211 000 00 0012455555554432 3479999999988 2
Q ss_pred HHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHH
Q 001227 936 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1015 (1119)
Q Consensus 936 l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA 1015 (1119)
....+.|+..++.. + +.++|.+|+.++.|.+++++|+ ..+.|+.|+.++..++++........ +.+...++
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 12334555555542 2 3466777788899999999999 78999999999998888876432211 22356788
Q ss_pred HHcCCCcHHHHHH
Q 001227 1016 NMADGYSGSDLKN 1028 (1119)
Q Consensus 1016 ~~TeGysg~DL~~ 1028 (1119)
....|-.+..+..
T Consensus 209 ~~a~Gs~~~al~~ 221 (314)
T PRK07399 209 ALAQGSPGAAIAN 221 (314)
T ss_pred HHcCCCHHHHHHH
Confidence 8887766555443
No 208
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.88 E-value=8.8e-08 Score=105.84 Aligned_cols=192 Identities=14% Similarity=0.178 Sum_probs=115.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEe--cCcc-----c---ccccc-----ch-HHHHHHHH----HHHHhcC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGA-NFINIS--MSSI-----T---SKWFG-----EG-EKYVKAVF----SLASKIA 911 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~-~fi~V~--~s~L-----~---s~~~G-----~~-e~~I~~lF----~~A~k~~ 911 (1119)
.-++|+||+|+|||++++.++..+.. .++.+. ...+ . ...+| .. ......+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998752 222211 1110 0 00111 11 11122221 2233456
Q ss_pred CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC--CCCC----cHHHHhccccccccC
Q 001227 912 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDL----DEAVVRRLPRRLMVN 985 (1119)
Q Consensus 912 PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~--p~~L----d~aLlrRF~~~I~v~ 985 (1119)
+.+|+|||++.+- .... ..+..+... .......+.|+.+... ...+ ...+.+|+...+.++
T Consensus 124 ~~vliiDe~~~l~--------~~~~-~~l~~l~~~----~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PELL-EELRMLSNF----QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHHH-HHHHHHhCc----ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 6899999999872 1111 111122111 1111223333443322 1111 134666877788999
Q ss_pred CCCHHHHHHHHHHHHhhcc-----cCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCC
Q 001227 986 LPDAPNREKIIRVILAKEE-----LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASP 1060 (1119)
Q Consensus 986 lPd~eeR~eILk~ll~k~~-----l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~ 1060 (1119)
..+.++..+++...+.... ..++..++.|+..+.|+.. .|..+|..|...+..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~-------------------- 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE-------------------- 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc--------------------
Confidence 9999999999998886532 2355678899999999865 5999999888776553
Q ss_pred CCCCCCccccccHHHHHHHHHHhc
Q 001227 1061 PLYSSVDVRPLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1061 ~~~~~~~~r~Lt~eDF~~Al~kv~ 1084 (1119)
....|+.+++..++..++
T Consensus 250 ------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 ------EKREIGGEEVREVIAEID 267 (269)
T ss_pred ------CCCCCCHHHHHHHHHHhh
Confidence 224699999999998865
No 209
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.88 E-value=3.7e-08 Score=112.51 Aligned_cols=64 Identities=39% Similarity=0.556 Sum_probs=44.3
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcc
Q 001227 816 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSI 888 (1119)
Q Consensus 816 fddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~s~L 888 (1119)
.+.++|+.++.++.--.+.+- ..+ ....+++||.||||||||.||-+||+++| .||+.++++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~mI-------k~~--K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMI-------KEG--KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHH-------HTT----TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred cccccChHHHHHHHHHHHHHH-------hcc--cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 457999999988876555431 111 11347899999999999999999999996 78877776553
No 210
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.88 E-value=4.4e-08 Score=120.78 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=42.1
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 879 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~ 879 (1119)
.-|++++|+++++..+...+.. ..+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4578899999999988887752 1489999999999999999999988543
No 211
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.87 E-value=1.9e-08 Score=118.29 Aligned_cols=143 Identities=22% Similarity=0.303 Sum_probs=84.9
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEecC--
Q 001227 816 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--N-----FINISMS-- 886 (1119)
Q Consensus 816 fddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~--~-----fi~V~~s-- 886 (1119)
++++.+.+...+.+...+.. .++++|+||||||||++|+++|..+.. . ++.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~~----------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 34555556666666554431 258999999999999999999998742 1 2233321
Q ss_pred --cccccc----ccch--HHHHHHHHHHHHhc--CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccC-------
Q 001227 887 --SITSKW----FGEG--EKYVKAVFSLASKI--APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG------- 949 (1119)
Q Consensus 887 --~L~s~~----~G~~--e~~I~~lF~~A~k~--~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldg------- 949 (1119)
+++..+ .|.. ...+..+...|... .|.|||||||++-- ..+++.+++..++.
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC-----------HHHhhhhhhhhcccccccccc
Confidence 122111 1100 11233445566543 47999999998651 12222333332221
Q ss_pred -C----------cccCCccEEEEEecCCCC----CCcHHHHhccccccccCC
Q 001227 950 -L----------RTKDKERVLVLAATNRPF----DLDEAVVRRLPRRLMVNL 986 (1119)
Q Consensus 950 -l----------~~k~~~~VlVIaTTN~p~----~Ld~aLlrRF~~~I~v~l 986 (1119)
+ .-..+.++.||||+|..+ .+|.|++||| ..+.+.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 0 012357899999999876 7999999999 4455553
No 212
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.4e-08 Score=114.65 Aligned_cols=147 Identities=20% Similarity=0.270 Sum_probs=97.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 877 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg-------------------- 877 (1119)
++.+.+.....+...+.. . .+-+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~----------~--~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE----------S--GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh----------c--CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 455666666666665542 1 12223599999999999999999999986
Q ss_pred ----CcEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccC
Q 001227 878 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 949 (1119)
Q Consensus 878 ----~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldg 949 (1119)
..++.++.++..... .....++.+-...... +..||+|||+|.|.. ...+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhcc
Confidence 467777776643321 1233455544444333 347999999999831 233444444433
Q ss_pred CcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHH
Q 001227 950 LRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKI 995 (1119)
Q Consensus 950 l~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eI 995 (1119)
++.+..+|.+||.+..+-+.+++|+ ..+.|.+|+...+...
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHH
Confidence 3467899999999999999999998 5677777554444433
No 213
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.4e-08 Score=112.66 Aligned_cols=111 Identities=25% Similarity=0.405 Sum_probs=75.4
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccch
Q 001227 819 IGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 896 (1119)
Q Consensus 819 I~G~e~ik~~L~e~v~~pL~~pelf~k-~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s-~~~G~~ 896 (1119)
++|++..|+.|.-.+....+|-..... ..+.-...+|||.||+|||||.||+.+|+.+++||..-++..|.. .|+|+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 778888877765444322221111100 111112357999999999999999999999999999999988764 577775
Q ss_pred -HHHHHHHHHHHH----hcCCeEEEEccccccccCCCC
Q 001227 897 -EKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRREN 929 (1119)
Q Consensus 897 -e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s 929 (1119)
|..+..+...|. +...+||||||||.+..+..+
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN 180 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSEN 180 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCC
Confidence 344455554442 334599999999999866544
No 214
>PRK04132 replication factor C small subunit; Provisional
Probab=98.84 E-value=3.1e-08 Score=124.67 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=118.2
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHHhcC------CeEEE
Q 001227 850 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVVF 916 (1119)
Q Consensus 850 ~P~~gILL~G--PpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~------PsILf 916 (1119)
-|.-+-++.| |++.|||++|+++|+++ +.+++++|+++..+ -..++.+...+.... ..|+|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 3445567788 99999999999999998 56899999987432 235666555443322 25999
Q ss_pred EccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHH
Q 001227 917 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 996 (1119)
Q Consensus 917 IDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eIL 996 (1119)
|||+|.| +...+ +.|+..++. .+..+.+|++||.++.+.+++++|+ ..+.|..|+.++-...+
T Consensus 636 IDEaD~L-----t~~AQ-------nALLk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADAL-----TQDAQ-------QALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccC-----CHHHH-------HHHHHHhhC----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 9999998 22223 333333333 2356889999999999999999998 78999999999999999
Q ss_pred HHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHH
Q 001227 997 RVILAKEELA-SDVDLEGIANMADGYSGSDLKNLC 1030 (1119)
Q Consensus 997 k~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~ 1030 (1119)
+.++.++++. ++..+..++..++|-....|..|-
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9888876654 566789999999987766665553
No 215
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.83 E-value=3.5e-09 Score=110.41 Aligned_cols=138 Identities=22% Similarity=0.362 Sum_probs=81.3
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----
Q 001227 819 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---- 891 (1119)
Q Consensus 819 I~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~---- 891 (1119)
|+|.+..++.+.+.+.... ..+..|||+|++||||+++|++|-+.. +.||+.++|+.+..+
T Consensus 1 liG~s~~m~~~~~~~~~~a------------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA------------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT------------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh------------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 3556666666666655311 123579999999999999999998765 579999999876433
Q ss_pred -cccchH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 001227 892 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 963 (1119)
Q Consensus 892 -~~G~~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaT 963 (1119)
.||... ..-..+|+.|.. ++||||||+.| +...|..+.+++++-....-+-....+.++.||++
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred hhhccccccccccccccCCceeeccc---eEEeecchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 333211 112356777766 99999999998 44445555444443222222211122458999999
Q ss_pred cCCCCCCcHHHHh-cc
Q 001227 964 TNRPFDLDEAVVR-RL 978 (1119)
Q Consensus 964 TN~p~~Ld~aLlr-RF 978 (1119)
|+. ++.+.+.. +|
T Consensus 141 t~~--~l~~~v~~g~f 154 (168)
T PF00158_consen 141 TSK--DLEELVEQGRF 154 (168)
T ss_dssp ESS---HHHHHHTTSS
T ss_pred cCc--CHHHHHHcCCC
Confidence 985 34444443 44
No 216
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.2e-08 Score=111.12 Aligned_cols=73 Identities=33% Similarity=0.587 Sum_probs=61.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccch-HHHHHHHHHHHH----hcCCeEEEEcccccccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLAS----KIAPSVVFVDEVDSMLG 925 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s-~~~G~~-e~~I~~lF~~A~----k~~PsILfIDEID~L~~ 925 (1119)
.+|||.||+|+|||.||+.+|+-+++||..++|..|.. .|+|+. |..+..++..|. +.+.+|+||||+|.+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 47999999999999999999999999999999999875 477765 556667776663 44569999999999973
No 217
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.82 E-value=7.1e-09 Score=102.84 Aligned_cols=118 Identities=31% Similarity=0.415 Sum_probs=69.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC-ccc-cccccch----HHHHHHHHHHHH-hcCCeEEEEccccccccC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGEG----EKYVKAVFSLAS-KIAPSVVFVDEVDSMLGR 926 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s-~L~-s~~~G~~----e~~I~~lF~~A~-k~~PsILfIDEID~L~~~ 926 (1119)
++||+|+||+|||++|+++|+.++..|..|.+. ++. ++..|.. +. ..|...+ ..-..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 589999999999999999999999999988774 322 1222210 00 0000000 000269999999765
Q ss_pred CCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC-----CCcHHHHhccc
Q 001227 927 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-----DLDEAVVRRLP 979 (1119)
Q Consensus 927 r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~-----~Ld~aLlrRF~ 979 (1119)
++..|.++..++.+....+++....-+.+++||||.|+.+ .|+++++.||-
T Consensus 75 --ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 --PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp ---HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred --CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 5566777778888877777776655668899999999865 78899999983
No 218
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.82 E-value=1.1e-07 Score=106.71 Aligned_cols=178 Identities=17% Similarity=0.223 Sum_probs=111.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcc------ccc--------c--ccchHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSI------TSK--------W--FGEGEKYVKAVFSLA 907 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~V~~s~L------~s~--------~--~G~~e~~I~~lF~~A 907 (1119)
+++||+|++|+|||++++..+... .+|++.+.++.- ... + -....+.-..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998765 257888887541 110 0 011233444566777
Q ss_pred HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC--CCCCcHHHHhccccccccC
Q 001227 908 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDLDEAVVRRLPRRLMVN 985 (1119)
Q Consensus 908 ~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~--p~~Ld~aLlrRF~~~I~v~ 985 (1119)
+..++.+|+|||++.++..... ..+.+++.+.. +...-.-+++.+||-.- .-.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~~-----~qr~~Ln~LK~----L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSYR-----KQREFLNALKF----LGNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccHH-----HHHHHHHHHHH----HhhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 8888999999999998643321 22333333322 22222345666665432 2345688999994 34444
Q ss_pred CCC-HHHHHHHHHHHHhhcccC------ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHH
Q 001227 986 LPD-APNREKIIRVILAKEELA------SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1041 (1119)
Q Consensus 986 lPd-~eeR~eILk~ll~k~~l~------~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrl 1041 (1119)
... -++-..++..+-....+. ...-...|-..++|..| ++..|+..|+..|++..
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcC
Confidence 332 344555666665543332 33334667788888766 89999999999988864
No 219
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.81 E-value=1.2e-07 Score=112.70 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=92.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecC-cccccccc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFG 894 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~--~fi~V~~s-~L~s~~~G 894 (1119)
.+.|.+++.+.+...+.. ..++||+||||||||++|++++...+. +|..+.+. ....+.+|
T Consensus 21 ~i~gre~vI~lll~aala----------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHcc----------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 467788888777665531 247999999999999999999997742 45544432 11223344
Q ss_pred ch-HHHH--HHHHHHHHhc---CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 895 EG-EKYV--KAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 895 ~~-e~~I--~~lF~~A~k~---~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.. -... ..-|...... ...+||+|||.++ ++..+..+..++++-.....+-..+-+.++++++| |...
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LP 158 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELP 158 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCc
Confidence 21 0000 1223211111 1249999999765 44445555555544443333322222344555444 6432
Q ss_pred ---CCcHHHHhccccccccCCCC-HHHHHHHHHHH
Q 001227 969 ---DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 999 (1119)
Q Consensus 969 ---~Ld~aLlrRF~~~I~v~lPd-~eeR~eILk~l 999 (1119)
...+++..||...+.++.|+ .++-.+++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 23358999997788888886 45556777653
No 220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.6e-08 Score=109.33 Aligned_cols=85 Identities=25% Similarity=0.460 Sum_probs=59.2
Q ss_pred CeEEEEccccccccCCCCCchhHHHH-HHHHhhhhhccCCc--cc----CCccEEEEEec----CCCCCCcHHHHhcccc
Q 001227 912 PSVVFVDEVDSMLGRRENPGEHEAMR-KMKNEFMVNWDGLR--TK----DKERVLVLAAT----NRPFDLDEAVVRRLPR 980 (1119)
Q Consensus 912 PsILfIDEID~L~~~r~s~~~~~~l~-~ll~~Ll~~ldgl~--~k----~~~~VlVIaTT----N~p~~Ld~aLlrRF~~ 980 (1119)
.+||||||||.++.+....+. ...+ -+...++-.++|-. ++ ....+++||+. ..|.+|-|.+.-||+.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 469999999999865542221 2222 23344555555432 11 23679999986 5789999999999999
Q ss_pred ccccCCCCHHHHHHHHH
Q 001227 981 RLMVNLPDAPNREKIIR 997 (1119)
Q Consensus 981 ~I~v~lPd~eeR~eILk 997 (1119)
++++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999888777664
No 221
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.80 E-value=8.8e-08 Score=110.76 Aligned_cols=166 Identities=23% Similarity=0.310 Sum_probs=106.9
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEec------C
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISM------S 886 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg-~~fi~V~~------s 886 (1119)
..|.-+.|++..+..|.-... ...-.|+||.|+.|||||+++++|+.-+. ...+. .| .
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 457788999999888754322 22235799999999999999999998872 11111 11 0
Q ss_pred c--------------------------cccccccchHH----------HHHH--------HHHHHHhcCCeEEEEccccc
Q 001227 887 S--------------------------ITSKWFGEGEK----------YVKA--------VFSLASKIAPSVVFVDEVDS 922 (1119)
Q Consensus 887 ~--------------------------L~s~~~G~~e~----------~I~~--------lF~~A~k~~PsILfIDEID~ 922 (1119)
+ +...-.+.++. .++. ++..|. .+||||||+..
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An---RGIlYvDEvnl 155 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN---RGILYVDEVNL 155 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc---CCEEEEecccc
Confidence 0 11111122222 1111 111222 27999999987
Q ss_pred cccCCCCCchhHHHHHHHHhh--hhhccCCcccCCccEEEEEecCCC-CCCcHHHHhccccccccCCC-CHHHHHHHHHH
Q 001227 923 MLGRRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLP-DAPNREKIIRV 998 (1119)
Q Consensus 923 L~~~r~s~~~~~~l~~ll~~L--l~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~v~lP-d~eeR~eILk~ 998 (1119)
| ...-+..+..++.+- ....+|+.-..+.++++|||+|+. ..|-+.++.||...+.+..| +.++|.+|++.
T Consensus 156 L-----~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 156 L-----DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred c-----cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHH
Confidence 7 222233333344332 334567666667899999999986 47889999999988888665 58889999988
Q ss_pred HHhh
Q 001227 999 ILAK 1002 (1119)
Q Consensus 999 ll~k 1002 (1119)
.+.-
T Consensus 231 ~~~f 234 (423)
T COG1239 231 RLAF 234 (423)
T ss_pred HHHh
Confidence 7665
No 222
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=8.2e-08 Score=110.23 Aligned_cols=151 Identities=18% Similarity=0.253 Sum_probs=101.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 906 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~------------------------fi~V~~s~L~s~~~G~~e~~I~~lF~~ 906 (1119)
.+..+||+||+|+|||++|+++|+.+.+. ++.+....- +. .-.-..++.+...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 45679999999999999999999988542 222211100 00 0123456666655
Q ss_pred HHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccc
Q 001227 907 ASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 982 (1119)
Q Consensus 907 A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I 982 (1119)
+... ...|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-eee
Confidence 5432 35699999999982 2344566666655 3367888899999999999999999 568
Q ss_pred ccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHH
Q 001227 983 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1024 (1119)
Q Consensus 983 ~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~ 1024 (1119)
.|.+|+.++-.+.+..... ...+.+...++..+.|-.+.
T Consensus 161 ~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPLR 199 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHHH
Confidence 9999999988887765431 12334455666677665443
No 223
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.79 E-value=1.7e-08 Score=105.59 Aligned_cols=114 Identities=26% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecCccccccccchHHHHHHHHHHH----HhcCCeEEEEccccc
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDS 922 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~----~fi~V~~s~L~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID~ 922 (1119)
|...+||.||+|+|||.+|+++|..+.. +++.++++.+... +..+..+...+..+ .....+||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5567999999999999999999999996 9999999987661 01111122222111 111125999999999
Q ss_pred cccCCCCCchhHHHHHHHHhhhhhccCCcc-------cCCccEEEEEecCCC
Q 001227 923 MLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKERVLVLAATNRP 967 (1119)
Q Consensus 923 L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~-------k~~~~VlVIaTTN~p 967 (1119)
..+. .+......-..+.+.|+..+++-.- -+-.++++|+|+|--
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 8654 2223333334566666666653221 123679999999853
No 224
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=1.3e-07 Score=108.60 Aligned_cols=149 Identities=13% Similarity=0.107 Sum_probs=101.9
Q ss_pred CcccccC-cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001227 815 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 879 (1119)
Q Consensus 815 sfddI~G-~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~-------------- 879 (1119)
.|+.|.| ++.+++.|...+.. .+.+..+||+||+|+||+++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4677777 88899999887752 3345678999999999999999999887332
Q ss_pred ----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhh
Q 001227 880 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 945 (1119)
Q Consensus 880 ----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~ 945 (1119)
+..+... +.. -.-..++.+.+.+.. ....|++|||+|.+- ....+.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHH
Confidence 1111110 000 112345555444432 224699999999882 223455666
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHH
Q 001227 946 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 998 (1119)
Q Consensus 946 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ 998 (1119)
.++. ++..+++|.+|+.+..+.+++++|+ ..+.+..|+.++-.++++.
T Consensus 133 ~LEE----Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE----PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC----CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 6655 3356777778888889999999999 7889999998887666653
No 225
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.74 E-value=3.6e-08 Score=117.11 Aligned_cols=202 Identities=18% Similarity=0.233 Sum_probs=117.4
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-
Q 001227 816 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 891 (1119)
Q Consensus 816 fddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~- 891 (1119)
+.+++|.....+.+.+.+.. . ......++|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 138 ~~~lig~s~~~~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEK-------I-----APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 34566666666666665532 0 1123469999999999999999998765 578999999876332
Q ss_pred ----cccchHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001227 892 ----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 960 (1119)
Q Consensus 892 ----~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlV 960 (1119)
.+|.... .....|..| ..++||||||+.| +...+..+.+++++-.....+.....+.++.+
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRI 277 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEE
Confidence 1221100 001112222 3489999999998 33344444444433221111111112346899
Q ss_pred EEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----cc----CChhcHHHHHHHcCCC
Q 001227 961 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL----ASDVDLEGIANMADGY 1021 (1119)
Q Consensus 961 IaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k~----~l----~~d~dl~~LA~~TeGy 1021 (1119)
|+||+.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.+. .. .++..+..|....=..
T Consensus 278 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 356 (445)
T TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPG 356 (445)
T ss_pred EEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCC
Confidence 9999764 34555566666 457788999888875 444444432 11 1222344444444334
Q ss_pred cHHHHHHHHHHHHhhhH
Q 001227 1022 SGSDLKNLCVTAAHCPI 1038 (1119)
Q Consensus 1022 sg~DL~~L~~~Aa~~ai 1038 (1119)
+.++|+++++.|+..+-
T Consensus 357 NvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 357 NVRELENKVKRAVIMAE 373 (445)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 66788888888876443
No 226
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.74 E-value=2.8e-07 Score=101.04 Aligned_cols=183 Identities=20% Similarity=0.293 Sum_probs=130.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEecCc---
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSS--- 887 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-g--~~fi~V~~s~--- 887 (1119)
.+++.+.+.++....|..+.. ....+++|+|||+|+||-+.+.++.+++ | .+=..+...+
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 466778888888888877553 1223599999999999999999999887 3 2111111100
Q ss_pred ----------cccc--------cccch-HHHHHHHHHHHHhcCC---------eEEEEccccccccCCCCCchhHHHHHH
Q 001227 888 ----------ITSK--------WFGEG-EKYVKAVFSLASKIAP---------SVVFVDEVDSMLGRRENPGEHEAMRKM 939 (1119)
Q Consensus 888 ----------L~s~--------~~G~~-e~~I~~lF~~A~k~~P---------sILfIDEID~L~~~r~s~~~~~~l~~l 939 (1119)
+.+. -.|.. .-.++.+.....+.+| .|++|-|+|.| ....|.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHH
Confidence 1111 12222 2244555555444332 59999999999 34567788888
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc
Q 001227 940 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1018 (1119)
Q Consensus 940 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~T 1018 (1119)
+.... ..+.+|..+|....+-+.+++|+ ..+.++.|+.++...++...++++.+. +..-+..+|+.+
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 87664 56788889999999999999997 668999999999999999999998876 455578899988
Q ss_pred CCCcHHHHH
Q 001227 1019 DGYSGSDLK 1027 (1119)
Q Consensus 1019 eGysg~DL~ 1027 (1119)
+|--.+.|-
T Consensus 219 ~~nLRrAll 227 (351)
T KOG2035|consen 219 NRNLRRALL 227 (351)
T ss_pred cccHHHHHH
Confidence 876665553
No 227
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.72 E-value=4.9e-08 Score=117.60 Aligned_cols=153 Identities=25% Similarity=0.311 Sum_probs=90.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 877 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg---------------- 877 (1119)
..|+++.|+..+++.+.-.+. ...+++|.||||||||++|+.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999888776654332 235799999999999999999986431
Q ss_pred ------------CcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhh
Q 001227 878 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 945 (1119)
Q Consensus 878 ------------~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~ 945 (1119)
.||...+++......+|.....-...+..|.. ++|||||++.+ +...++.+...++.-..
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 22333222221111222211111223444443 89999999977 32334444443333221
Q ss_pred hc--cCCcccCCccEEEEEecCCC-----C------------------CCcHHHHhccccccccCCCCHH
Q 001227 946 NW--DGLRTKDKERVLVLAATNRP-----F------------------DLDEAVVRRLPRRLMVNLPDAP 990 (1119)
Q Consensus 946 ~l--dgl~~k~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRF~~~I~v~lPd~e 990 (1119)
.+ .+.....+.++.+|+++|+. . .+...++.||+..+.++.++..
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 11 11112224679999999863 1 4777888899977777666543
No 228
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.65 E-value=2e-07 Score=111.57 Aligned_cols=203 Identities=21% Similarity=0.255 Sum_probs=118.4
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 891 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~ 891 (1119)
.+.+++|.......+.+.+.. . ......+||+|++|||||++|++|.... +.||+.++|+.+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~----------~--~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR----------L--SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHH----------H--hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH
Confidence 345677777666666665542 0 1123469999999999999999998876 579999999876332
Q ss_pred -----cccchHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEE
Q 001227 892 -----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 959 (1119)
Q Consensus 892 -----~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~Vl 959 (1119)
.+|.... .....|..| ..+.||||||+.| +...+..+.+++++-.....+-....+.++.
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 275 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDM-----PLDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccC-----CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEE
Confidence 1221100 001112222 3479999999988 3233333333332211111111111135678
Q ss_pred EEEecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----c----CChhcHHHHHHHcCC
Q 001227 960 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMADG 1020 (1119)
Q Consensus 960 VIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k~~----l----~~d~dl~~LA~~TeG 1020 (1119)
+|+||+.. ..+.+.+..|| ..+.+.+|...+|.+ ++..++.+.. . .++..+..|....=.
T Consensus 276 ii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wp 354 (469)
T PRK10923 276 IIAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWP 354 (469)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCC
Confidence 99999753 24556777777 357788888777765 5555554421 1 122334444444434
Q ss_pred CcHHHHHHHHHHHHhhhH
Q 001227 1021 YSGSDLKNLCVTAAHCPI 1038 (1119)
Q Consensus 1021 ysg~DL~~L~~~Aa~~ai 1038 (1119)
.+.++|+++++.|+..+-
T Consensus 355 gNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 355 GNVRQLENTCRWLTVMAA 372 (469)
T ss_pred ChHHHHHHHHHHHHHhCC
Confidence 466888888888876543
No 229
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=4.8e-07 Score=111.49 Aligned_cols=194 Identities=14% Similarity=0.190 Sum_probs=115.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EecC---cc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMS---SI 888 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~-V~~s---~L 888 (1119)
..++++++++++..+.+..++..... . ..+..-++|+||||+|||++++.+|.+++..+++ ++.. ..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 46889999999999999887763111 0 1233459999999999999999999999876544 1111 00
Q ss_pred c----------cc--cccchHHHHHHHHHHHHh----------cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhh
Q 001227 889 T----------SK--WFGEGEKYVKAVFSLASK----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 946 (1119)
Q Consensus 889 ~----------s~--~~G~~e~~I~~lF~~A~k----------~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ 946 (1119)
. .. .+......+..++..|.. ....|||||||+.++.. . ......++... .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----~~~lq~lLr~~--~ 223 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----TRALHEILRWK--Y 223 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----HHHHHHHHHHH--h
Confidence 0 00 011223344555555542 23579999999987632 1 11222222200 1
Q ss_pred ccCCcccCCccEEEEE-ecCCCC----------C----CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhccc----
Q 001227 947 WDGLRTKDKERVLVLA-ATNRPF----------D----LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL---- 1005 (1119)
Q Consensus 947 ldgl~~k~~~~VlVIa-TTN~p~----------~----Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l---- 1005 (1119)
.+ . ..+.+|+ +|..+. . |.+++++ |. .+|.|++.+..+..+.|+.++..+..
T Consensus 224 ~e----~--~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 224 VS----I--GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred hc----C--CCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 11 1 2233333 332221 1 3367775 44 46889999999988888888876421
Q ss_pred ----CChhcHHHHHHHcCCCcHHHHHHH
Q 001227 1006 ----ASDVDLEGIANMADGYSGSDLKNL 1029 (1119)
Q Consensus 1006 ----~~d~dl~~LA~~TeGysg~DL~~L 1029 (1119)
..+..+..|+....|-....|..|
T Consensus 297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred ccccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 123457778887777666666555
No 230
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=1.8e-06 Score=100.52 Aligned_cols=238 Identities=21% Similarity=0.243 Sum_probs=147.5
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccc-
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK- 891 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s~- 891 (1119)
.+.|.+..+..+++++..++. ...+.++.+.|.||||||.+...+.... ....++++|..+...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 578899999999998886554 2234679999999999999998776554 335688998753221
Q ss_pred -----ccc---------chHHHHHHHHHHHH-hc-CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCC
Q 001227 892 -----WFG---------EGEKYVKAVFSLAS-KI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 955 (1119)
Q Consensus 892 -----~~G---------~~e~~I~~lF~~A~-k~-~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~ 955 (1119)
.++ ..+......|+.-. +. .+-||++||+|.|+.... .++.++ .+|..+ ..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~---------~vLy~l-Fewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ---------TVLYTL-FEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---------ceeeee-hhcccC---Cc
Confidence 111 11122223333222 22 367999999999973322 122221 234443 45
Q ss_pred ccEEEEEecCCCCCCcHHHHh---c---cccccccCCCCHHHHHHHHHHHHhhcccCCh--hcHHHHHHHcCCCcHHHHH
Q 001227 956 ERVLVLAATNRPFDLDEAVVR---R---LPRRLMVNLPDAPNREKIIRVILAKEELASD--VDLEGIANMADGYSGSDLK 1027 (1119)
Q Consensus 956 ~~VlVIaTTN~p~~Ld~aLlr---R---F~~~I~v~lPd~eeR~eILk~ll~k~~l~~d--~dl~~LA~~TeGysg~DL~ 1027 (1119)
.++++||.+|..+.-|..+-+ | -+..+.|++++.++..+||...+........ ..++-.|+...|.+| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987655544333 2 2567889999999999999999888654433 346777888888777 665
Q ss_pred HH---HHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcccccc
Q 001227 1028 NL---CVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1089 (1119)
Q Consensus 1028 ~L---~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~ 1089 (1119)
.+ |+.|...+-. +.+ .. .....++....+...+|.++++..++.++-.+.+.
T Consensus 367 kaLdv~R~aiEI~E~-----e~r---~~--~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~ 421 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEI-----EKR---KI--LDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSA 421 (529)
T ss_pred HHHHHHHHHHHHHHH-----HHh---hc--cccCCCCCCCcccccccchHHHHHHhhhhccChhh
Confidence 44 4444322211 111 00 01111222222333678899999999988665443
No 231
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.2e-06 Score=100.29 Aligned_cols=163 Identities=12% Similarity=0.142 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----------------------
Q 001227 823 ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------------------- 879 (1119)
Q Consensus 823 e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~----------------------- 879 (1119)
....+.|.+.+.. .+-+..+||+||+|+||+++|+++|+.+-+.
T Consensus 8 ~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 8 QPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred HHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 4555666665542 2345789999999999999999999887431
Q ss_pred -EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccC
Q 001227 880 -FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 954 (1119)
Q Consensus 880 -fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~ 954 (1119)
++.+... .++. -....++.+-..+... .-.|++||++|.|- ....|.|+..++. +
T Consensus 75 D~~~i~p~--~~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE----P 134 (325)
T PRK06871 75 DFHILEPI--DNKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE----P 134 (325)
T ss_pred CEEEEccc--cCCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC----C
Confidence 1112110 0111 1234566655554432 33699999999882 2344566666655 4
Q ss_pred CccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 001227 955 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 955 ~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg 1023 (1119)
+.++++|.+|+.++.|.+++++|+ ..+.|..|+.++..+.|..... .+......++..+.|-.+
T Consensus 135 p~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred CCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 467889999999999999999999 6789999999888877765431 122234455555655444
No 232
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.1e-06 Score=101.20 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=100.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHH
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 905 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~elg~~------------------------fi~V~~s~L~s~~~G~~e~~I~~lF~ 905 (1119)
+.+..+||+||+|+||+++|.++|+.+-+. ++.+.... ... .-.-..++.+-.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKS--SLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-ccc--cCCHHHHHHHHH
Confidence 445789999999999999999999987331 11121100 000 012335555555
Q ss_pred HHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccc
Q 001227 906 LASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 981 (1119)
Q Consensus 906 ~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~ 981 (1119)
.+.. ....|++||++|.|- ....|.|+..++. ++.+.++|.+|+.++.|.+++++|+ ..
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~ 161 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RL 161 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-cc
Confidence 4443 234699999999982 2344666666665 4567899999999999999999999 46
Q ss_pred cccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHH
Q 001227 982 LMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 1026 (1119)
Q Consensus 982 I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL 1026 (1119)
+.++.|+.++..+.+... ... +......++..+.|-.+..+
T Consensus 162 ~~~~~~~~~~~~~~L~~~---~~~-~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSRE---VTM-SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHc---cCC-CHHHHHHHHHHcCCCHHHHH
Confidence 899999988877766532 122 23335566677776555433
No 233
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.57 E-value=1.8e-06 Score=104.43 Aligned_cols=228 Identities=20% Similarity=0.224 Sum_probs=141.8
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcc
Q 001227 819 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 888 (1119)
Q Consensus 819 I~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V~~s~L 888 (1119)
+-+.+.-..+|..++...+... . -...+.|.|-||||||.++..+.+++ .+.|+.||+-.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~-----~----~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ-----G----LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC-----C----CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 4556777777877776533320 1 11359999999999999999997765 478899997554
Q ss_pred ccc----------cccchH------HHHHHHHHHH-HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCc
Q 001227 889 TSK----------WFGEGE------KYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 951 (1119)
Q Consensus 889 ~s~----------~~G~~e------~~I~~lF~~A-~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~ 951 (1119)
.+. +.|+.. ..+..-|... .+..++||+|||+|.|+.+.+ .++..| -..+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q---------dVlYn~----fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ---------DVLYNI----FDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH---------HHHHHH----hcCC
Confidence 332 122211 1223333311 233468999999999975442 233322 2334
Q ss_pred ccCCccEEEEEecCCCCCCcH----HHHhccc-cccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHH--
Q 001227 952 TKDKERVLVLAATNRPFDLDE----AVVRRLP-RRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS-- 1024 (1119)
Q Consensus 952 ~k~~~~VlVIaTTN~p~~Ld~----aLlrRF~-~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~-- 1024 (1119)
+.++.+++||+.+|..+.... .+-+|++ .++.|.+.+..+..+|+...+..........++-+|+.-...+|.
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 445688999999887543222 2233553 468899999999999999998876444444455555555544542
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcccc
Q 001227 1025 DLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1087 (1119)
Q Consensus 1025 DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~ 1087 (1119)
.-..+|++|+..+..+.. +. ...-...|++-|+.+|+..+..+.
T Consensus 616 raldic~RA~Eia~~~~~-~~------------------k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV-KG------------------KLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHHhhhhcc-cc------------------cccccceeehHHHHHHHHHHhhhh
Confidence 234677777766655432 10 111224688999999999886553
No 234
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.57 E-value=3.6e-07 Score=94.76 Aligned_cols=133 Identities=21% Similarity=0.307 Sum_probs=85.3
Q ss_pred CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 001227 821 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 878 (1119)
Q Consensus 821 G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~---------------------- 878 (1119)
|++++.+.|.+.+.. .+-+..+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677888888887763 234567999999999999999999988722
Q ss_pred -cEEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCccc
Q 001227 879 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 953 (1119)
Q Consensus 879 -~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k 953 (1119)
.++.+....-.. .-....++.+...+... ...|++|||+|.|- ....+.|+..|+.
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEe---- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEE---- 128 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS----
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcC----
Confidence 133333222100 01234566666555433 34699999999982 2334555555554
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccccccccCC
Q 001227 954 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 986 (1119)
Q Consensus 954 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~l 986 (1119)
++.++.+|.+|+.++.+.+.+++|+ ..+.++.
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 3467899999999999999999998 4555543
No 235
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.56 E-value=4.9e-07 Score=107.70 Aligned_cols=176 Identities=20% Similarity=0.271 Sum_probs=102.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-----cccchHHH-------HHHHHHHHHhcCCeEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVVFV 917 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~-----~~G~~e~~-------I~~lF~~A~k~~PsILfI 917 (1119)
..+|++|++||||+++|+++.... +.+|+.++|..+... .+|..... ....|..| ..++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEE
Confidence 479999999999999999997765 579999999876432 12211000 01122222 2489999
Q ss_pred ccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhccccccccCCCCHH
Q 001227 918 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 990 (1119)
Q Consensus 918 DEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~e 990 (1119)
||||.| +...+..+..++..-.....+.....+.++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 244 d~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEM-----PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLR 317 (457)
T ss_pred echhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 322333333333221111111111123468999999764 23445555566 34778889988
Q ss_pred HHHH----HHHHHHhhccc--------CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001227 991 NREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 991 eR~e----ILk~ll~k~~l--------~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~a 1037 (1119)
+|.+ ++..++.+... .++..++.|....=..+.++|+++++.|+..+
T Consensus 318 eR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 318 DRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred hchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 8865 44444443211 12222334444433446688888888887644
No 236
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=3e-06 Score=96.99 Aligned_cols=171 Identities=19% Similarity=0.202 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-E---EEec---------Ccc
Q 001227 822 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I---NISM---------SSI 888 (1119)
Q Consensus 822 ~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~f-i---~V~~---------s~L 888 (1119)
+..+.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+.- . .+.+ +++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 34566666665542 23446799999999999999999998873310 0 0000 111
Q ss_pred cc-----cccc------chHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCccc
Q 001227 889 TS-----KWFG------EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 953 (1119)
Q Consensus 889 ~s-----~~~G------~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k 953 (1119)
.- ...| -.-..++.+...+...+ -.|++||++|.|- ....|.|+..++.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhC----
Confidence 10 0001 11335666665554433 3699999999982 2234556665554
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHH
Q 001227 954 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 1027 (1119)
Q Consensus 954 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~ 1027 (1119)
++.++++|.+|+.++.|.+++++|+ ..+.|..|+.++-...+... .. +..+...++..+.|-.+..+.
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHHHHH
Confidence 3456788888999999999999999 67889999988777666532 22 233345667777776554443
No 237
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=98.51 E-value=3.8e-07 Score=80.40 Aligned_cols=68 Identities=31% Similarity=0.475 Sum_probs=57.2
Q ss_pred eeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEec
Q 001227 22 FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFS 92 (1119)
Q Consensus 22 ~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~ 92 (1119)
++||++..||+.|.|+.+|..||.|..-.. .. ..|+-.++..-++|||+.+.++..+.|+.||+|.||
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~--~~-~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD--GQ-FYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT--EE-EEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece--ee-EEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 589999999999999999999999986633 22 566766655569999999999999999999999996
No 238
>PRK08116 hypothetical protein; Validated
Probab=98.50 E-value=5.6e-07 Score=100.69 Aligned_cols=123 Identities=18% Similarity=0.277 Sum_probs=71.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccccc----chHHHHHHHHHHHHhcCCeEEEEccccccc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG----EGEKYVKAVFSLASKIAPSVVFVDEVDSML 924 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G----~~e~~I~~lF~~A~k~~PsILfIDEID~L~ 924 (1119)
..+++|+|++|||||+||.+||+++ +.+++.++.+++...... ........++.... ...+|+|||+...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 3579999999999999999999986 788899988776543211 11111122332222 3469999999542
Q ss_pred cCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-CC----CcHHHHhcc---ccccccCCCCH
Q 001227 925 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDEAVVRRL---PRRLMVNLPDA 989 (1119)
Q Consensus 925 ~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p-~~----Ld~aLlrRF---~~~I~v~lPd~ 989 (1119)
..+...++.+..+++.... ....+|.|||.+ .. ++..+.+|+ ...+.+.-|+.
T Consensus 191 --~~t~~~~~~l~~iin~r~~----------~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 --RDTEWAREKVYNIIDSRYR----------KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred --CCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 1122223333334443321 123466777754 33 456777774 23345555553
No 239
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.49 E-value=1.4e-06 Score=100.50 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=48.3
Q ss_pred Ccc-cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 001227 815 TFD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 885 (1119)
Q Consensus 815 sfd-dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------~fi~V~~ 885 (1119)
-|+ ++.|+++.+.++.+++..... +.....+-++|+||||+|||+||++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 366 799999999999887764221 11223356899999999999999999999865 7777655
No 240
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.48 E-value=1.1e-06 Score=105.93 Aligned_cols=153 Identities=24% Similarity=0.303 Sum_probs=89.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec----
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISM---- 885 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg----~~fi~V~~---- 885 (1119)
..|.++.|...+++.+.-.+ ....+++|+||||+|||++++.++..+. -..+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 36778888877666543211 1335799999999999999999986552 11111110
Q ss_pred --C-----cc-----c--------cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhh
Q 001227 886 --S-----SI-----T--------SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 945 (1119)
Q Consensus 886 --s-----~L-----~--------s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~ 945 (1119)
. .+ . ...+|.....-...+..|.. ++|||||++.+ +...++.+.+.+++-..
T Consensus 252 ~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 252 VNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQI 323 (506)
T ss_pred hccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcE
Confidence 0 00 0 00112111112234555555 89999999876 32333444443333222
Q ss_pred hccC--CcccCCccEEEEEecCCCC---------------------CCcHHHHhccccccccCCCCHH
Q 001227 946 NWDG--LRTKDKERVLVLAATNRPF---------------------DLDEAVVRRLPRRLMVNLPDAP 990 (1119)
Q Consensus 946 ~ldg--l~~k~~~~VlVIaTTN~p~---------------------~Ld~aLlrRF~~~I~v~lPd~e 990 (1119)
.+.. .....+.++.+|+|+|+.. .+...++.||+..+.++.|+.+
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 2221 1222346899999999752 4777899999988888887644
No 241
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.48 E-value=4.3e-07 Score=114.13 Aligned_cols=175 Identities=19% Similarity=0.199 Sum_probs=97.7
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhh---cC----CCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEE
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINI 883 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~---k~----~l~~P~~gILL~GPpGTGKT~LArAIA~el-------g~~fi~V 883 (1119)
.|.|++.+|..|.-.+..-......+. .+ .-.+...+|||.|+||||||.+|+++++.. |.++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 688999999887443322111100000 00 112334579999999999999999998864 2344444
Q ss_pred ecCcccccc-ccchHHH-HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhh--ccCCcccCCccEE
Q 001227 884 SMSSITSKW-FGEGEKY-VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTKDKERVL 959 (1119)
Q Consensus 884 ~~s~L~s~~-~G~~e~~-I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~--ldgl~~k~~~~Vl 959 (1119)
.+....... ....+.. -...+..|. .++++|||++.+ +...+..+..++++-... -.|+...-+.++.
T Consensus 531 gLTa~~~~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkm-----s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~r 602 (915)
T PTZ00111 531 GLTASIKFNESDNGRAMIQPGAVVLAN---GGVCCIDELDKC-----HNESRLSLYEVMEQQTVTIAKAGIVATLKAETA 602 (915)
T ss_pred cccchhhhcccccCcccccCCcEEEcC---CCeEEecchhhC-----CHHHHHHHHHHHhCCEEEEecCCcceecCCCeE
Confidence 443321100 0000000 001222222 389999999988 223333333333222111 1233333457899
Q ss_pred EEEecCCC-------------CCCcHHHHhccccccc-cCCCCHHHHHHHHHHHH
Q 001227 960 VLAATNRP-------------FDLDEAVVRRLPRRLM-VNLPDAPNREKIIRVIL 1000 (1119)
Q Consensus 960 VIaTTN~p-------------~~Ld~aLlrRF~~~I~-v~lPd~eeR~eILk~ll 1000 (1119)
||||+|+. -.|++.+++||+.++. ++.|+.+.-..|-++++
T Consensus 603 VIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 603 ILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred EEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 99999984 2577999999986644 57777666666655554
No 242
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=1.7e-06 Score=99.82 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=91.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------------------EEEecCccc---------------
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------------------INISMSSIT--------------- 889 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~elg~~f-------------------------i~V~~s~L~--------------- 889 (1119)
+.+..+||+||+|+||+++|+++|+.+.+.. +.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4457899999999999999999998884421 111111000
Q ss_pred ---ccc-----ccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001227 890 ---SKW-----FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 957 (1119)
Q Consensus 890 ---s~~-----~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~ 957 (1119)
+.. -.-.-..++.+...+... .-.|++||++|.|- ....|.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 000 001123455555544322 23599999999982 2344666666664 4567
Q ss_pred EEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHH
Q 001227 958 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 999 (1119)
Q Consensus 958 VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~l 999 (1119)
+++|.+|++++.|.+++++|+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999999999999 68999999999888887653
No 243
>PRK15115 response regulator GlrR; Provisional
Probab=98.48 E-value=1.6e-06 Score=103.00 Aligned_cols=176 Identities=20% Similarity=0.278 Sum_probs=101.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccchHH-------HHHHHHHHHHhcCCeEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEK-------YVKAVFSLASKIAPSVVFV 917 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~-----~G~~e~-------~I~~lF~~A~k~~PsILfI 917 (1119)
..++|+|++|||||++|+++.+.. +.+|+.++|..+.... +|.... ....+|.. ...++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA---AEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEE---CCCCEEEE
Confidence 469999999999999999998775 5799999998763321 111000 00011222 23479999
Q ss_pred ccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhccccccccCCCCHH
Q 001227 918 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 990 (1119)
Q Consensus 918 DEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~e 990 (1119)
||||.| +...+..+.+++.+-....-+.......++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 235 ~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 999998 333344443333322111111111123478999999753 12333344444 34678889998
Q ss_pred HHHH----HHHHHHhhccc--------CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001227 991 NREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 991 eR~e----ILk~ll~k~~l--------~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~a 1037 (1119)
+|.+ +++.++.+... .++.-+..|....=.-+.++|+++++.|+..+
T Consensus 309 ~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred hccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 8864 44555544210 12333455555443446678888888877543
No 244
>PRK12377 putative replication protein; Provisional
Probab=98.48 E-value=7.5e-07 Score=98.53 Aligned_cols=149 Identities=19% Similarity=0.243 Sum_probs=82.7
Q ss_pred hcCCCCCCCCCCCcccccC----cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh--
Q 001227 803 LADVIPPSDIGVTFDDIGA----LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-- 876 (1119)
Q Consensus 803 l~~vip~~e~~~sfddI~G----~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-- 876 (1119)
...-+++.....+|++... ...+...+.+++.. |.. ...+++|+||||||||+||.|||+++
T Consensus 60 ~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 60 NRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred HHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444566555678888643 22234444443331 211 23589999999999999999999887
Q ss_pred -CCcEEEEecCccccccccch--HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCccc
Q 001227 877 -GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 953 (1119)
Q Consensus 877 -g~~fi~V~~s~L~s~~~G~~--e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k 953 (1119)
+..++.++.+++....-... ......++... ....+|+|||+... +.+...++.+..+++..+.
T Consensus 128 ~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~---~~s~~~~~~l~~ii~~R~~-------- 194 (248)
T PRK12377 128 KGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ---RETKNEQVVLNQIIDRRTA-------- 194 (248)
T ss_pred cCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC---CCCHHHHHHHHHHHHHHHh--------
Confidence 67788888777655321100 00111222222 34579999999654 2222233334444443321
Q ss_pred CCccEEEEEecCCC-----CCCcHHHHhcc
Q 001227 954 DKERVLVLAATNRP-----FDLDEAVVRRL 978 (1119)
Q Consensus 954 ~~~~VlVIaTTN~p-----~~Ld~aLlrRF 978 (1119)
...-+|.|||.. ..+.+.+.+|+
T Consensus 195 --~~~ptiitSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 195 --SMRSVGMLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred --cCCCEEEEcCCCHHHHHHHhhHHHHHHH
Confidence 123456678853 13444555554
No 245
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.45 E-value=1.4e-06 Score=107.61 Aligned_cols=49 Identities=31% Similarity=0.460 Sum_probs=41.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
...|+++.|+++++..|...+.. .+++||+||||||||++|+++++.+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 35789999999999998886652 13799999999999999999988764
No 246
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.43 E-value=8e-07 Score=106.15 Aligned_cols=202 Identities=21% Similarity=0.288 Sum_probs=112.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc--
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-- 892 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~-- 892 (1119)
.+.|.......+.+.+.. + ......++|.|++||||+++|+++.... +.+|+.++|..+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~-~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-L-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ceeecCHHHHHHHHHHHH-H-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 466666666666555432 0 1123469999999999999999998765 5799999998764322
Q ss_pred ---ccchHHH-------HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 001227 893 ---FGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 962 (1119)
Q Consensus 893 ---~G~~e~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIa 962 (1119)
+|..... ....|. ....++||||||+.| +...+..+.+++.+-....-+-......++.||+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l-----~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDM-----PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhC-----CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 2211000 001122 223589999999988 2223333333322211110011111124678899
Q ss_pred ecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhcc----c----CChhcHHHHHHHcCCCcH
Q 001227 963 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 963 TTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k~~----l----~~d~dl~~LA~~TeGysg 1023 (1119)
+|+.. ..+.+.+..|+ ..+.+.+|...+|.+ ++..++.... . .++..+..|....=--+.
T Consensus 275 ~~~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 353 (463)
T TIGR01818 275 ATHQNLEALVRQGKFREDLFHRL-NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNV 353 (463)
T ss_pred eCCCCHHHHHHcCCcHHHHHHHh-CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChH
Confidence 88753 24555666676 346777787766653 4555544321 1 122233444444222355
Q ss_pred HHHHHHHHHHHhhhHHH
Q 001227 1024 SDLKNLCVTAAHCPIRE 1040 (1119)
Q Consensus 1024 ~DL~~L~~~Aa~~airr 1040 (1119)
++|+++++.|+..+-..
T Consensus 354 reL~~~~~~~~~~~~~~ 370 (463)
T TIGR01818 354 RQLENLCRWLTVMASGD 370 (463)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 88889988887655443
No 247
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=5.3e-06 Score=94.94 Aligned_cols=144 Identities=16% Similarity=0.147 Sum_probs=97.5
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 001227 822 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 879 (1119)
Q Consensus 822 ~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~---------------------- 879 (1119)
+....+.+...+.. .+.+..+||+||.|+||+.+|.++|+.+-+.
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 34566666665542 3445789999999999999999999887321
Q ss_pred -EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccC
Q 001227 880 -FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 954 (1119)
Q Consensus 880 -fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~ 954 (1119)
|+.+.... .++. -....++.+-..+... .-.|++||++|.|- ....|.|+..++. +
T Consensus 75 D~~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----P 135 (319)
T PRK06090 75 DLHVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE----P 135 (319)
T ss_pred CEEEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----C
Confidence 22222110 0011 1233455555444332 24699999999882 2344566666665 3
Q ss_pred CccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHH
Q 001227 955 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 998 (1119)
Q Consensus 955 ~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ 998 (1119)
+.++++|.+|+.++.|.+++++|+ ..+.|+.|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999999 6889999998887777654
No 248
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.3e-07 Score=110.69 Aligned_cols=46 Identities=41% Similarity=0.662 Sum_probs=38.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 874 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~ 874 (1119)
...|.|+.|++..|..+.-... + .+++|++|||||||||||+.+..
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------G-----gHnLl~~GpPGtGKTmla~Rl~~ 220 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------G-----GHNLLLVGPPGTGKTMLASRLPG 220 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------c-----CCcEEEecCCCCchHHhhhhhcc
Confidence 3479999999999999977553 2 36899999999999999998854
No 249
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.38 E-value=2.7e-06 Score=94.01 Aligned_cols=107 Identities=22% Similarity=0.311 Sum_probs=66.2
Q ss_pred hcCCCCCCCCCCCcccccCc-HH---HHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh--
Q 001227 803 LADVIPPSDIGVTFDDIGAL-EN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-- 876 (1119)
Q Consensus 803 l~~vip~~e~~~sfddI~G~-e~---ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-- 876 (1119)
....+++.....+|+++... +. +...+.+++.. |. ....+++|+|+||||||+|+.+||+++
T Consensus 58 ~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 58 NRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred HHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34456665556789886532 22 33333333321 11 112489999999999999999999988
Q ss_pred -CCcEEEEecCccccccccc---hHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001227 877 -GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 877 -g~~fi~V~~s~L~s~~~G~---~e~~I~~lF~~A~k~~PsILfIDEID~L 923 (1119)
+..++.++.+++....-.. .......++.... ...+|+|||++..
T Consensus 126 ~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 126 RGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred cCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7788888887766432211 1111223333332 4689999999865
No 250
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.9e-06 Score=98.29 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=93.5
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhccC--hhhHHHHHHHHhcC-------CCCEEEEeeccCCCcccccCCCCCce
Q 001227 558 INELFEVALNESKSSPLIVFVKDIEKSLTGN--NDAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGLL 628 (1119)
Q Consensus 558 ~~~l~ev~~~esk~~p~Ilf~~die~~l~~~--~~~~~~l~~~L~~L-------~g~vvvIgs~~~~d~~k~k~~~~~~~ 628 (1119)
|..||.-.+. | ..-++||||+.|.+||.. +.+-...++.|.+| +..+|++-|+|
T Consensus 431 iH~lFDWakk-S-~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtN--------------- 493 (630)
T KOG0742|consen 431 IHKLFDWAKK-S-RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATN--------------- 493 (630)
T ss_pred HHHHHHHHhh-c-ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccC---------------
Confidence 4444444432 1 466899999999999943 44555678888888 45788888999
Q ss_pred eeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccchhH
Q 001227 629 FTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIIS 706 (1119)
Q Consensus 629 ~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~Il~ 706 (1119)
.|-++| -+++.+|-.+|++++|..|...+ ...-.-|+..|+.++.- -+.
T Consensus 494 ---------------rpgdlD-------------sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~-~~~ 544 (630)
T KOG0742|consen 494 ---------------RPGDLD-------------SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKP-GKW 544 (630)
T ss_pred ---------------Cccchh-------------HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCC-chh
Confidence 444455 56777888899999999998866 44444556666655531 111
Q ss_pred HHHH------hhhCC-CCcccchhhhcccCCCCHHHHHHHHhh
Q 001227 707 IRSV------LSRNG-LDCVDLESLCIKDQTLTTEGVEKIVGW 742 (1119)
Q Consensus 707 IhT~------l~~~~-l~~~~L~~LA~~tkg~sgadI~~Lv~~ 742 (1119)
-|-. +.--+ +.+..+.+.|.+|.||+|-+|+.|+-.
T Consensus 545 ~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 545 SHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred hHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 1111 11112 244567889999999999999998754
No 251
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.32 E-value=4.3e-07 Score=91.23 Aligned_cols=106 Identities=24% Similarity=0.492 Sum_probs=63.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 929 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s 929 (1119)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..+++.+ ..+.|||+|||.| +
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L-----~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL-----S 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-----C
Confidence 4699999999999999999988774 466767766533 3344444 5689999999998 2
Q ss_pred CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-C------CCcHHHHhccccccccCCCC
Q 001227 930 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-F------DLDEAVVRRLPRRLMVNLPD 988 (1119)
Q Consensus 930 ~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p-~------~Ld~aLlrRF~~~I~v~lPd 988 (1119)
...+..+.. ++.. . +..++.+|+++..+ . .+++.+..||. .+.+.+|+
T Consensus 83 ~~~Q~~L~~----~l~~---~---~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lPp 137 (138)
T PF14532_consen 83 PEAQRRLLD----LLKR---Q---ERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLPP 137 (138)
T ss_dssp HHHHHHHHH----HHHH---C---TTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE--
T ss_pred HHHHHHHHH----HHHh---c---CCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCCC
Confidence 222222222 2211 1 12456777776542 2 45566766774 34555553
No 252
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.32 E-value=2.7e-06 Score=96.08 Aligned_cols=161 Identities=26% Similarity=0.350 Sum_probs=102.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 889 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~ 889 (1119)
...|+.+++....++.+.+.... ++. +. ..+||+|..||||-.+|++.-... ..||+.+||+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k-------~Am--lD---APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK-------LAM--LD---APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH-------hhc--cC---CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 45688888887777666554331 111 11 249999999999999999975554 7899999997653
Q ss_pred -----cccccchH--HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 001227 890 -----SKWFGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 962 (1119)
Q Consensus 890 -----s~~~G~~e--~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIa 962 (1119)
++.||... +--..+|+.|.. +.+|+|||..+ ++.-|..+.++++.-....-|-...-..+|.||+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 23444332 334578888877 89999999877 3344444444444332222222112235799999
Q ss_pred ecCCC--C-----CCcHHHHhccccccccCCCCHHHHHH
Q 001227 963 ATNRP--F-----DLDEAVVRRLPRRLMVNLPDAPNREK 994 (1119)
Q Consensus 963 TTN~p--~-----~Ld~aLlrRF~~~I~v~lPd~eeR~e 994 (1119)
||..+ + .+-+.+.-|. .++.+.+|...+|..
T Consensus 340 atq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~ 377 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQ 377 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcc
Confidence 99653 1 2223333366 467888998888754
No 253
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.31 E-value=1.7e-06 Score=96.93 Aligned_cols=158 Identities=19% Similarity=0.230 Sum_probs=103.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecC
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 886 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~------fi~V~~s 886 (1119)
...++++++.+++...+.++... .+ -+++|+|||||||||....+.|..+-.+ +..++.+
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~-lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PG-LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CC-CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 44677899999999888886432 11 2389999999999999999999988543 1223333
Q ss_pred ccccccccchHHHHHHHHHHHHh-------cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEE
Q 001227 887 SITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 959 (1119)
Q Consensus 887 ~L~s~~~G~~e~~I~~lF~~A~k-------~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~Vl 959 (1119)
+-.+ .+ ....--..|..++. ..+..+++||.|.+. ...|.++++++..+. .++.
T Consensus 103 d~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~t-----------~n~r 163 (360)
T KOG0990|consen 103 DDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKYT-----------ANTR 163 (360)
T ss_pred CccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHhc-----------cceE
Confidence 2111 11 11122234554442 256799999999883 344556666555442 4566
Q ss_pred EEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc
Q 001227 960 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE 1004 (1119)
Q Consensus 960 VIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~ 1004 (1119)
++..+|.+..+.+++++||. .+.+...+..+-...+.+++..+.
T Consensus 164 F~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred EEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHhcch
Confidence 66778999999999999984 566666666666666666665543
No 254
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=98.31 E-value=2.2e-06 Score=80.38 Aligned_cols=88 Identities=24% Similarity=0.405 Sum_probs=73.1
Q ss_pred CCCceeeec-ceeeeeccccc-ceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCe
Q 001227 11 GNSHLSMTG-AVFTVGHNRQC-DLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 88 (1119)
Q Consensus 11 ~~~~~~~~~-~~~tvg~~~~~-~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde 88 (1119)
..+...|.. ..++||++..| |+.|.|..+|..||.|.....+ .+.+++..+.. -++|||+.+.++..+.|..||+
T Consensus 12 ~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~--~~~~~~~~s~~-g~~vn~~~~~~~~~~~l~~gd~ 88 (102)
T cd00060 12 SGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG--GVVLIDLGSTN-GTFVNGQRVSPGEPVRLRDGDV 88 (102)
T ss_pred ceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC--CEEEEECCCCC-CeEECCEECCCCCcEECCCCCE
Confidence 678888998 99999999999 9999999999999999966422 22455555544 5889999999988999999999
Q ss_pred EEecCCCCcceeee
Q 001227 89 LVFSPSGKHSYIFQ 102 (1119)
Q Consensus 89 ~vf~~~~~~~yi~~ 102 (1119)
+.|+. +.+.|.|+
T Consensus 89 i~ig~-~~~~~~~~ 101 (102)
T cd00060 89 IRLGN-TSISFRFE 101 (102)
T ss_pred EEECC-eEEEEEEe
Confidence 99987 56677665
No 255
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.30 E-value=1.1e-05 Score=89.36 Aligned_cols=130 Identities=18% Similarity=0.274 Sum_probs=83.1
Q ss_pred CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC------------CCCCcHHHHhcc
Q 001227 911 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRL 978 (1119)
Q Consensus 911 ~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF 978 (1119)
-|+||||||++.| .-....++++.+.. +-.++++ .+||+ |+-++-.++.|.
T Consensus 288 vpGVLFIDEvHML-----DIEcFsFlNrAlE~-----------d~~Piii-maTNrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----DIECFSFLNRALEN-----------DMAPIII-MATNRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred ccceEEEeeehhh-----hhHHHHHHHHHhhh-----------ccCcEEE-EEcCCceEEeecCCCCCCCCCcHHHhhhh
Confidence 3789999999877 21222233333221 1133444 44443 678888899987
Q ss_pred ccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 001227 979 PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENR 1057 (1119)
Q Consensus 979 ~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~ 1057 (1119)
.+|.-.+.+.++.++||+..+.++.+. .+..++.|......-+-+--.+|+..|...+.++-
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk---------------- 413 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK---------------- 413 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc----------------
Confidence 567778889999999999999887655 33334555555444455555677777777666651
Q ss_pred CCCCCCCCCccccccHHHHHHHHHHhc
Q 001227 1058 ASPPLYSSVDVRPLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1058 ~~~~~~~~~~~r~Lt~eDF~~Al~kv~ 1084 (1119)
...+..+|++.|.+-+-
T Consensus 414 ----------~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 414 ----------GKVVEVDDIERVYRLFL 430 (454)
T ss_pred ----------CceeehhHHHHHHHHHh
Confidence 24577788888776543
No 256
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.30 E-value=7.5e-06 Score=90.33 Aligned_cols=90 Identities=23% Similarity=0.332 Sum_probs=58.0
Q ss_pred CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-------------CCCCcHHHHhc
Q 001227 911 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------------PFDLDEAVVRR 977 (1119)
Q Consensus 911 ~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~-------------p~~Ld~aLlrR 977 (1119)
-|+||||||++.| . -+ .+.-|...+++ +-.-+||.+||+ |+-+++.++.|
T Consensus 296 vPGVLFIDEVhML-----D---iE----cFTyL~kalES-----~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----D---IE----CFTYLHKALES-----PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----h---hH----HHHHHHHHhcC-----CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 4889999999877 1 11 11112222222 122356666664 67888999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc
Q 001227 978 LPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1018 (1119)
Q Consensus 978 F~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~T 1018 (1119)
+ .+|..-+.+.++.++|++...+.+.+. ++..+..++...
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIG 399 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhc
Confidence 8 566677778888899999988877665 344455666554
No 257
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.30 E-value=2.1e-06 Score=91.56 Aligned_cols=180 Identities=19% Similarity=0.286 Sum_probs=92.9
Q ss_pred cCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEecCc-cc------
Q 001227 820 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISMSS-IT------ 889 (1119)
Q Consensus 820 ~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~---~fi~V~~s~-L~------ 889 (1119)
.|.++..+.|.+.+.. .+...++|+||.|+|||+|++.+.+.+.- ..+.+.... ..
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 4566666777665541 13467999999999999999999998832 222222111 00
Q ss_pred ---------------cc-------------cccchHHHHHHHHHHHHhcC-CeEEEEccccccc-cCCCCCchhHHHHHH
Q 001227 890 ---------------SK-------------WFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSML-GRRENPGEHEAMRKM 939 (1119)
Q Consensus 890 ---------------s~-------------~~G~~e~~I~~lF~~A~k~~-PsILfIDEID~L~-~~r~s~~~~~~l~~l 939 (1119)
.. ........+..++....+.. ..||+|||++.+. .... ... +
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~---~~~----~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE---DKD----F 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT---THH----H
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc---hHH----H
Confidence 00 00112334556666655543 4899999999996 2221 122 2
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCC------CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc-c-CChhcH
Q 001227 940 KNEFMVNWDGLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-L-ASDVDL 1011 (1119)
Q Consensus 940 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~-l-~~d~dl 1011 (1119)
+..+...++..... .++.+|.++.... .-...+..|+.. +.++..+.++..++++..+.... + .++.++
T Consensus 141 ~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhcccc--CCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 23333333332222 3344444333211 111224446655 88999999999999999877651 1 267788
Q ss_pred HHHHHHcCCCcH
Q 001227 1012 EGIANMADGYSG 1023 (1119)
Q Consensus 1012 ~~LA~~TeGysg 1023 (1119)
+.+...+.|+.+
T Consensus 218 ~~i~~~~gG~P~ 229 (234)
T PF01637_consen 218 EEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHTT-HH
T ss_pred HHHHHHhCCCHH
Confidence 999999988643
No 258
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.28 E-value=2.9e-06 Score=100.53 Aligned_cols=175 Identities=18% Similarity=0.259 Sum_probs=96.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccchHHH-------HHHHHHHHHhcCCeEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVVFV 917 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~-----~G~~e~~-------I~~lF~~A~k~~PsILfI 917 (1119)
..++++|.+||||+++|+++.... +.+|+.++|..+.... +|..... ....|. ....++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEEE
Confidence 579999999999999999997665 5799999998754322 1211000 001122 223589999
Q ss_pred ccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhccccccccCCCCHH
Q 001227 918 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 990 (1119)
Q Consensus 918 DEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~e 990 (1119)
|||+.| +...+..+..++..-.....+.....+.++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 240 dei~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLr 313 (441)
T PRK10365 240 DEIGDI-----SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLR 313 (441)
T ss_pred eccccC-----CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 323333333332221111111111123467888888653 12344444455 35778889988
Q ss_pred HHHH----HHHHHHhhcc----c----CChhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001227 991 NREK----IIRVILAKEE----L----ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1036 (1119)
Q Consensus 991 eR~e----ILk~ll~k~~----l----~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~ 1036 (1119)
+|.+ +++.++.+.. . .++..+..|....=.-+.++|+++++.|+..
T Consensus 314 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 314 QRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 8765 4455544321 0 1222233333333223456666666666543
No 259
>PRK08181 transposase; Validated
Probab=98.25 E-value=2.8e-06 Score=95.13 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=48.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L 923 (1119)
.+++|+||||||||+||.++++++ |..++.++..++....... .+......+... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 579999999999999999999765 7888888887766543111 011122333332 24579999999876
No 260
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.24 E-value=6.7e-06 Score=80.23 Aligned_cols=55 Identities=29% Similarity=0.494 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhccCC-CCeEEEEcChhhhhccC--------hhhHHHHHHHHhcCCC---CEEEEeeccC
Q 001227 557 AINELFEVALNESKS-SPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLPS---NVVVIGSHTQ 614 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~-~p~Ilf~~die~~l~~~--------~~~~~~l~~~L~~L~g---~vvvIgs~~~ 614 (1119)
.+..+|+.+.. . .|.||||||+|.+.... ....+.|.+.+++... +++||+++|.
T Consensus 45 ~i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 45 KIRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HHHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ccccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 34445555544 4 49999999999977765 6777888888888865 6999999994
No 261
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.24 E-value=4.7e-06 Score=102.32 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=91.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccch--HHHH--------HHHHHHHHhcCCeEEEEccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEV 920 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~s~L~s~~~G~~--e~~I--------~~lF~~A~k~~PsILfIDEI 920 (1119)
.||||.|++||||++++++++.-+. .||+.+..+.-....+|.. +..+ ..++..|.. +||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5899999999999999999999874 5888877655444445543 1111 122333332 89999999
Q ss_pred cccccCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCC---CCCcHHHHhccccccccCCCCHHH
Q 001227 921 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPN 991 (1119)
Q Consensus 921 D~L~~~r~s~~~~~~l~~ll~~Ll~~l--dgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~v~lPd~ee 991 (1119)
..+ ++...+.+...+.+-.+.+ ++....-+.++++|++-|.. ..|.+.++.||+..+.+..|+..+
T Consensus 103 n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 103 ERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred ccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 876 4445555566665555555 56665566889999985432 458899999999888888877554
No 262
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.3e-05 Score=98.81 Aligned_cols=127 Identities=23% Similarity=0.320 Sum_probs=88.5
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc---
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--- 889 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~--P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~--- 889 (1119)
.++|++++...+-+.+.. ++.++.+ |...+||.||.|+|||-||+++|..+ .-.++.++++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~--------sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRR--------SRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHh--------hhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 588999999999998875 2334444 56679999999999999999999988 4578999998632
Q ss_pred ---cc---cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCccc-------CCc
Q 001227 890 ---SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKE 956 (1119)
Q Consensus 890 ---s~---~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k-------~~~ 956 (1119)
+. |.|.. ....+.+..++.+-+||+|||||.- ...+++.|+..++...-. .-.
T Consensus 635 kligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 635 KLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred hccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 21 33332 3445666666666799999999854 123444455555433221 236
Q ss_pred cEEEEEecCC
Q 001227 957 RVLVLAATNR 966 (1119)
Q Consensus 957 ~VlVIaTTN~ 966 (1119)
+++||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 7999999874
No 263
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.23 E-value=2.5e-05 Score=94.88 Aligned_cols=196 Identities=17% Similarity=0.256 Sum_probs=113.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc---
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--- 889 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~--- 889 (1119)
..+.+|+.-..+..++++.++...+. . ..+.+-+||+||+|||||++++.+|+++|+.+++...+...
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~------~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS------G---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc------c---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 35678888888888888888764221 1 12334588999999999999999999999988876433220
Q ss_pred ----cccccch---H---H---HHHHH-HHHHHh-----------cCCeEEEEccccccccCCCCCchhHHHHHHHHhhh
Q 001227 890 ----SKWFGEG---E---K---YVKAV-FSLASK-----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 944 (1119)
Q Consensus 890 ----s~~~G~~---e---~---~I~~l-F~~A~k-----------~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll 944 (1119)
..+.+.. + . ....+ +..++. ..+.||+|+|+-.++... ....+.++.+++
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-----~~~f~~~L~~~l 160 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-----TSRFREALRQYL 160 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-----HHHHHHHHHHHH
Confidence 0111100 0 0 11111 111111 245799999997654211 133444444444
Q ss_pred hhccCCcccCCc-cEEEEEec-------CCCC--------CCcHHHHhcc-ccccccCCCCHHHHHHHHHHHHhhc----
Q 001227 945 VNWDGLRTKDKE-RVLVLAAT-------NRPF--------DLDEAVVRRL-PRRLMVNLPDAPNREKIIRVILAKE---- 1003 (1119)
Q Consensus 945 ~~ldgl~~k~~~-~VlVIaTT-------N~p~--------~Ld~aLlrRF-~~~I~v~lPd~eeR~eILk~ll~k~---- 1003 (1119)
.. ... ++++|.|- +... .+.+.++... -.+|.|.+-...-..+.|+.++..+
T Consensus 161 ~~-------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 161 RS-------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred Hc-------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 32 112 67777771 1111 3456666522 2567888878777777787777765
Q ss_pred ----ccCChh-cHHHHHHHcCCCcHHHHHHH
Q 001227 1004 ----ELASDV-DLEGIANMADGYSGSDLKNL 1029 (1119)
Q Consensus 1004 ----~l~~d~-dl~~LA~~TeGysg~DL~~L 1029 (1119)
...... .++.|+..+.|--...|.+|
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~L 264 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNGDIRSAINNL 264 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCchHHHHHHHH
Confidence 111222 37788887766555555444
No 264
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=9.5e-06 Score=93.30 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=86.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecCcc---cccc-ccchHHHH
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSI---TSKW-FGEGEKYV 900 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~elg~-------------------------~fi~V~~s~L---~s~~-~G~~e~~I 900 (1119)
+-+..+||+||+|+|||++|+++|+.+.+ .|+.+....- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34567999999999999999999988732 1333332110 0000 00124456
Q ss_pred HHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh
Q 001227 901 KAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 976 (1119)
Q Consensus 901 ~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr 976 (1119)
+.+.+.+... ...|++||+++.| +. ...+.++..++... ..+.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----d~-------~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----NL-------QAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----CH-------HHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 7776666542 2469999999988 21 22233444444432 235677788888899999999
Q ss_pred ccccccccCCCCHHHHHHHHHH
Q 001227 977 RLPRRLMVNLPDAPNREKIIRV 998 (1119)
Q Consensus 977 RF~~~I~v~lPd~eeR~eILk~ 998 (1119)
|+ ..+.|+.|+.++..+.+..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 6788999999887777654
No 265
>PF13173 AAA_14: AAA domain
Probab=98.13 E-value=8.9e-06 Score=80.70 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=47.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L 923 (1119)
+-++|+||+|+|||++++.+++.+. -+++.+++.+.........+ +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3589999999999999999998886 77888887764332111111 222222222225689999999877
No 266
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.10 E-value=6.5e-06 Score=94.70 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=66.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc---hHHHHHHHHHHHHhcCCeEEEEccccccccC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 926 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~---~e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 926 (1119)
.+++|+||+|||||+||.+||+++ |..++.++..++....... ........+... ....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC--
Confidence 689999999999999999999987 7888899887765543110 000111112222 234799999997652
Q ss_pred CCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-CCC----CcHHHHhcc
Q 001227 927 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFD----LDEAVVRRL 978 (1119)
Q Consensus 927 r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~-p~~----Ld~aLlrRF 978 (1119)
.++...+.+..+++..+.. +-.+|.|||. +.. +++.+.+|+
T Consensus 260 -~t~~~~~~Lf~iin~R~~~----------~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 260 -ITEFSKSELFNLINKRLLR----------QKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred -CCHHHHHHHHHHHHHHHHC----------CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 1222333444444444311 1235666664 333 455677775
No 267
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.07 E-value=1.6e-05 Score=77.96 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=48.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecCccccc--------------cc--cchHHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITSK--------------WF--GEGEKYVKAVFSLAS 908 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el--------g~~fi~V~~s~L~s~--------------~~--G~~e~~I~~lF~~A~ 908 (1119)
+.++|+||+|+|||++++.++..+ ..+++.++++..... .. .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 569999999999999999999887 678888887542210 01 122334445555555
Q ss_pred hcCCeEEEEccccccc
Q 001227 909 KIAPSVVFVDEVDSML 924 (1119)
Q Consensus 909 k~~PsILfIDEID~L~ 924 (1119)
+....+|+|||+|.|.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999974
No 268
>PRK06526 transposase; Provisional
Probab=98.04 E-value=5.1e-06 Score=92.37 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=46.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L 923 (1119)
..+++|+||||||||+||.+|+.++ |..++.+++.+++...... ........+... ..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 3689999999999999999998876 6777666666554432110 001112222221 34689999999876
No 269
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.02 E-value=2.6e-05 Score=88.99 Aligned_cols=70 Identities=23% Similarity=0.374 Sum_probs=48.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~-e~~I~~lF~~A~k~~PsILfIDEID~L 923 (1119)
.+|++|+||+|||||+||.|||+++ |.++..+..++++...-... .......+.... ...+|+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 4689999999999999999999998 78888888877654421110 011222333322 3579999999643
No 270
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.01 E-value=4.1e-06 Score=88.29 Aligned_cols=69 Identities=28% Similarity=0.472 Sum_probs=45.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHHhcCCeEEEEccccc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 922 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~-e~~I~~lF~~A~k~~PsILfIDEID~ 922 (1119)
..+++|+||+|||||+||.+|++++ |.++..++.++++...-... .......+.... ...+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 4689999999999999999999876 88899999887765432110 011222333333 347999999964
No 271
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.01 E-value=2.2e-05 Score=87.29 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=48.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHH-HHH-HHHHHHHhcCCeEEEEcccccc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-YVK-AVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~e~-~I~-~lF~~A~k~~PsILfIDEID~L 923 (1119)
..+++|+||||+|||+||.||++++ |..++.+..++++...-..... ... .+.... ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 4689999999999999999999887 7899999988877653221110 111 111112 23479999999754
No 272
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.1e-05 Score=90.43 Aligned_cols=75 Identities=31% Similarity=0.336 Sum_probs=60.6
Q ss_pred cccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 001227 310 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 389 (1119)
Q Consensus 310 ~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~ 389 (1119)
-++|+.+..=-||+-=|= -+-|+-|++=|.+-|+-.++ +-..+|=+-+|=|||-||||| ....|.||||+++.+|
T Consensus 130 w~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPGT--GKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPGT--GKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCCC--ChhHHHHHHHHhheee
Confidence 356777777778885443 67788888877777776655 456799999999999999999 7999999999999888
No 273
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.95 E-value=3.1e-05 Score=95.73 Aligned_cols=171 Identities=29% Similarity=0.356 Sum_probs=100.6
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EecCc---cc----
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSS---IT---- 889 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~-V~~s~---L~---- 889 (1119)
.|.|++.+|+.|.=.+.-.. ......+...+.--+|||.|.||||||.|.+.+++-+-..++. -.++. |.
T Consensus 287 sIyG~e~VKkAilLqLfgGv--~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGV--KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCC--cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 57899999988754433211 1111112112233579999999999999999999877433221 11111 11
Q ss_pred -----cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEE
Q 001227 890 -----SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLA 962 (1119)
Q Consensus 890 -----s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~l--dgl~~k~~~~VlVIa 962 (1119)
++|.-+. .++..| .++|+.|||+|.+ +.....++...+.+-...+ .|+...-+.+.-|+|
T Consensus 365 rd~~tge~~Lea-----GALVlA---D~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLA 431 (682)
T COG1241 365 RDKVTGEWVLEA-----GALVLA---DGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLA 431 (682)
T ss_pred EccCCCeEEEeC-----CEEEEe---cCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhh
Confidence 1111110 111222 2489999999987 3333444444444333333 244444457788999
Q ss_pred ecCCCC-------------CCcHHHHhcccccccc-CCCCHHHHHHHHHHHHhhc
Q 001227 963 ATNRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1003 (1119)
Q Consensus 963 TTN~p~-------------~Ld~aLlrRF~~~I~v-~lPd~eeR~eILk~ll~k~ 1003 (1119)
|+|+.. +|++.+++|||..+.+ ..|+.+.-+.+.++.+...
T Consensus 432 AaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 432 AANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred hhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 999754 5788999999966554 5677776666666666553
No 274
>PRK09183 transposase/IS protein; Provisional
Probab=97.93 E-value=2e-05 Score=87.92 Aligned_cols=71 Identities=27% Similarity=0.414 Sum_probs=48.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L 923 (1119)
..+++|+||||||||+||.+++..+ |..+..+++.++...+... ....+..++... ...+.+++|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3579999999999999999997664 7778888776655332110 011233344433 235689999999865
No 275
>PRK06921 hypothetical protein; Provisional
Probab=97.93 E-value=1.8e-05 Score=88.55 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=44.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDS 922 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~ 922 (1119)
..+++|+||+|+|||+|+.+||+++ +..++.+...++....... .......+... ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 3579999999999999999999876 5677888765544321110 00111111221 2457999999953
No 276
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.92 E-value=6.3e-05 Score=82.61 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=76.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 932 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 932 (1119)
.+-.++||+|||||..++++|+.+|.+++.++|++.++ ...+.++|.-+.... +.+++||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhh-----hHHH
Confidence 46678999999999999999999999999999988543 346777777766654 89999999988 2122
Q ss_pred hHHHHHHHHhhhhhccCC---------cccCCccEEEEEecCC----CCCCcHHHHhccccccccCCCCHHHHHHHH
Q 001227 933 HEAMRKMKNEFMVNWDGL---------RTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKII 996 (1119)
Q Consensus 933 ~~~l~~ll~~Ll~~ldgl---------~~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~v~lPd~eeR~eIL 996 (1119)
-......+..+...+..- .-.-+...-+..|.|+ ...|++.++.-| +.+.+..||.....+++
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 222222222222222111 0011123445556663 357888888777 77888899977655543
No 277
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.89 E-value=5.3e-05 Score=75.98 Aligned_cols=71 Identities=23% Similarity=0.419 Sum_probs=48.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------------cc--cchHHHHHHHHHHH
Q 001227 855 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WF--GEGEKYVKAVFSLA 907 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~----------------------~~--G~~e~~I~~lF~~A 907 (1119)
++|+||||+|||+++..++... +.+++.++....... .. .........+...+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 567777766432210 00 01111222345556
Q ss_pred HhcCCeEEEEcccccccc
Q 001227 908 SKIAPSVVFVDEVDSMLG 925 (1119)
Q Consensus 908 ~k~~PsILfIDEID~L~~ 925 (1119)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667889999999998863
No 278
>PF05729 NACHT: NACHT domain
Probab=97.87 E-value=8.9e-05 Score=75.00 Aligned_cols=140 Identities=16% Similarity=0.257 Sum_probs=73.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-EEEEecCcccccc------------ccchHHHHHH-HHHHHHhcC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAG--------AN-FINISMSSITSKW------------FGEGEKYVKA-VFSLASKIA 911 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg--------~~-fi~V~~s~L~s~~------------~G~~e~~I~~-lF~~A~k~~ 911 (1119)
-++|+|+||+|||++++.++..+. .+ ++.+.+.+..... .......+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987761 12 2233333321110 0011111121 222333445
Q ss_pred CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccc--cccccCCCCH
Q 001227 912 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP--RRLMVNLPDA 989 (1119)
Q Consensus 912 PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~--~~I~v~lPd~ 989 (1119)
..+|+||.+|.+...... .........+..++.. .. ..++.+|.|+.+ ..... +.+++. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~--~~----~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQ--AL----PPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhh--cc----CCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 678999999998532211 0111222233333321 01 123444444432 22221 444332 3477888899
Q ss_pred HHHHHHHHHHHhh
Q 001227 990 PNREKIIRVILAK 1002 (1119)
Q Consensus 990 eeR~eILk~ll~k 1002 (1119)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988753
No 279
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.86 E-value=2.9e-05 Score=93.86 Aligned_cols=176 Identities=24% Similarity=0.320 Sum_probs=105.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCcc-----ccccccchHHHHHHHHHHHHhc-----CCeEEEEccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSI-----TSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEV 920 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el--g~~fi~V~~s~L-----~s~~~G~~e~~I~~lF~~A~k~-----~PsILfIDEI 920 (1119)
-.+||.|.+||||-.||++|-... .-||+.+||..+ .+++||.........+.+-++- ..+.+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 369999999999999999997665 579999999764 3345554332222222221111 1279999999
Q ss_pred cccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh-ccc-------cccccCCCCHHHH
Q 001227 921 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR-RLP-------RRLMVNLPDAPNR 992 (1119)
Q Consensus 921 D~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr-RF~-------~~I~v~lPd~eeR 992 (1119)
..| +-..|..+.+++++-.+.--|-.. .+..|.||+||++. |..-+.. ||. ..+.+.+|...+|
T Consensus 417 gd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~d--l~~lv~~g~fredLyyrL~~~~i~lP~lr~R 488 (606)
T COG3284 417 GDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRD--LAQLVEQGRFREDLYYRLNAFVITLPPLRER 488 (606)
T ss_pred hhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcC--HHHHHHcCCchHHHHHHhcCeeeccCchhcc
Confidence 887 334566666777666555444443 56889999999873 2222222 332 2456788888777
Q ss_pred HH---HHHHHHhhcccC-ChhcHHHHHHHcC-CC--cHHHHHHHHHHHHhh
Q 001227 993 EK---IIRVILAKEELA-SDVDLEGIANMAD-GY--SGSDLKNLCVTAAHC 1036 (1119)
Q Consensus 993 ~e---ILk~ll~k~~l~-~d~dl~~LA~~Te-Gy--sg~DL~~L~~~Aa~~ 1036 (1119)
.+ +|..++.+..-. -..+-+.++.... .| +.++|.++++.++..
T Consensus 489 ~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 489 SDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred cccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Confidence 54 445555443221 1222223332221 12 456777777776643
No 280
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.85 E-value=3e-06 Score=97.69 Aligned_cols=174 Identities=26% Similarity=0.341 Sum_probs=85.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc-----ccccc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-----ITSKW 892 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~-----L~s~~ 892 (1119)
.|.|++.+|..+.=.+....... ...+...+..-+|||.|.||||||.|.+.+++-....+ ++++.. |....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~--~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKN--DPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCC--CCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhccccc--cccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 57888887776632211111100 00001123345799999999999999998865543322 333211 11110
Q ss_pred c---cchHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhcc--CCcccCCccEEEEEecCC
Q 001227 893 F---GEGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNR 966 (1119)
Q Consensus 893 ~---G~~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ld--gl~~k~~~~VlVIaTTN~ 966 (1119)
. ...+..+ ...+-.|.+ +|++|||+|.+ .......+..++++-...+. |+...-+.+.-|+|++|+
T Consensus 102 ~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--
T ss_pred ccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhh
Confidence 0 0011111 124455554 99999999988 22334444444443322222 222233567899999987
Q ss_pred CC-------------CCcHHHHhcccccccc-CCCCHHHHHHHHHHHHhh
Q 001227 967 PF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 967 p~-------------~Ld~aLlrRF~~~I~v-~lPd~eeR~eILk~ll~k 1002 (1119)
.. .+++.+++|||..+.+ +.|+.+.-..+.++++..
T Consensus 174 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 174 KFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 54 4677899999977654 677777667777776655
No 281
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00022 Score=80.65 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=77.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--------Ccccccc-cc----chHHHHHHHHHHHHhc----CC
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM--------SSITSKW-FG----EGEKYVKAVFSLASKI----AP 912 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~--------s~L~s~~-~G----~~e~~I~~lF~~A~k~----~P 912 (1119)
+-+..+||+||.|+||+.+|.++|..+-+.-..-.| +++.--. .+ -.-..++.+...+... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 345689999999999999999999887432100001 1211000 01 1233455555555433 23
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCC
Q 001227 913 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 987 (1119)
Q Consensus 913 sILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lP 987 (1119)
.|++||++|.|- ....|.|+..++. ++.++++|..|+.++.+.+++++|+ ..+.|+.+
T Consensus 97 kv~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 699999999982 2234555555554 3467889999999999999999998 45566544
No 282
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.84 E-value=3.6e-05 Score=86.53 Aligned_cols=139 Identities=21% Similarity=0.345 Sum_probs=78.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEecCccccccccchHHHHHHHHHHH----Hh-------cCCeEEEEc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA----SK-------IAPSVVFVD 918 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg-~~--fi~V~~s~L~s~~~G~~e~~I~~lF~~A----~k-------~~PsILfID 918 (1119)
+++||+||+|||||++++.....+. .. ...++++... ....++.+.+.. .+ .+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5799999999999999998876653 22 3345543311 112222222111 00 123599999
Q ss_pred cccccccCCCCCchhHHHHHHHHhhhhhccCCccc------CCccEEEEEecCCC---CCCcHHHHhccccccccCCCCH
Q 001227 919 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDA 989 (1119)
Q Consensus 919 EID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k------~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~v~lPd~ 989 (1119)
|+..- ..+.-+.+.. ..++.+++.. .|.... .=.++.+||++++. ..+++.+.|.| .++.++.|+.
T Consensus 108 DlN~p--~~d~ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMP--QPDKYGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCC--CCCCCCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 99843 2222233332 2344444422 122111 11568889998764 35788888888 6888999999
Q ss_pred HHHHHHHHHHHhh
Q 001227 990 PNREKIIRVILAK 1002 (1119)
Q Consensus 990 eeR~eILk~ll~k 1002 (1119)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998888765
No 283
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.80 E-value=0.00017 Score=84.75 Aligned_cols=206 Identities=21% Similarity=0.272 Sum_probs=118.0
Q ss_pred cccCcHHHHHHHHHHHhccc-CChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE---------EecC
Q 001227 818 DIGALENVKDTLKELVMLPL-QRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------ISMS 886 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL-~~pelf~k~~l-~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~---------V~~s 886 (1119)
+|.|++++|+.|.-++.-.. +.+ ..|. .+..-+|+|.|.||+-|+-|.++|.+-.-...+. +..+
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~----~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSP----GDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCC----CCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchh
Confidence 68999999999866553211 111 1111 1234569999999999999999998766332222 1111
Q ss_pred ccccccccchHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhh--hccCCcccCCccEEEEEe
Q 001227 887 SITSKWFGEGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV--NWDGLRTKDKERVLVLAA 963 (1119)
Q Consensus 887 ~L~s~~~G~~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~--~ldgl~~k~~~~VlVIaT 963 (1119)
-+.....|+. .+ ...+..|.. +|..|||+|.+... ...+.-.++.+-.. .-.|+.+.-+.+.-|+|+
T Consensus 419 VmkDpvTgEM--~LEGGALVLAD~---GICCIDEfDKM~e~-----DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaA 488 (721)
T KOG0482|consen 419 VMKDPVTGEM--VLEGGALVLADG---GICCIDEFDKMDES-----DRTAIHEVMEQQTISIAKAGINTTLNARTSILAA 488 (721)
T ss_pred hhcCCCCCee--EeccceEEEccC---ceEeehhhhhhhhh-----hhHHHHHHHHhhhhhhhhhccccchhhhHHhhhh
Confidence 1111111111 00 012223333 89999999998422 23333344433332 234566666778899999
Q ss_pred cCCCC-------------CCcHHHHhcccccccc-CCCCHHHHHHHHHHHHhh--cccCCh-----hcH------HHHHH
Q 001227 964 TNRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAK--EELASD-----VDL------EGIAN 1016 (1119)
Q Consensus 964 TN~p~-------------~Ld~aLlrRF~~~I~v-~lPd~eeR~eILk~ll~k--~~l~~d-----~dl------~~LA~ 1016 (1119)
+|+.. .|+.++++||+..+-+ +.|+.+.-..+.+++..- ..-.+. .+. -.+|+
T Consensus 489 ANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak 568 (721)
T KOG0482|consen 489 ANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAK 568 (721)
T ss_pred cCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHh
Confidence 98632 6889999999976554 778887777766665421 111111 222 22445
Q ss_pred HcCCCcHHHHHHHHHHHHhhh
Q 001227 1017 MADGYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 1017 ~TeGysg~DL~~L~~~Aa~~a 1037 (1119)
.-.-+.+.+|..-+..|-...
T Consensus 569 ~~~P~vp~~l~dyi~~AYv~~ 589 (721)
T KOG0482|consen 569 RKNPVVPEALADYITGAYVEL 589 (721)
T ss_pred hcCCCCCHHHHHHHHHHHHHH
Confidence 555667777777666654443
No 284
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.74 E-value=0.00024 Score=79.25 Aligned_cols=157 Identities=16% Similarity=0.086 Sum_probs=82.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hC--CcE-EEEecCc----------cccc---c------ccchHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATE--AG--ANF-INISMSS----------ITSK---W------FGEGEKYVKAVFSL 906 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~e--lg--~~f-i~V~~s~----------L~s~---~------~G~~e~~I~~lF~~ 906 (1119)
..+-|.|+|++|+|||+||..+++. .. +.. +.++... +... . ....+.....+..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~- 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE- 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH-
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh-
Confidence 4467999999999999999999977 32 221 2233221 0000 0 0112333333443
Q ss_pred HHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCC
Q 001227 907 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 986 (1119)
Q Consensus 907 A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~l 986 (1119)
.-...+.+|+||+++... .+..+...+.. ...+..||.||...... ...... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc--------------ccccccccccc----ccccccccccccccccc-cccccc-cccccccc
Confidence 334448999999997541 11122211111 11245667777654322 111111 35688888
Q ss_pred CCHHHHHHHHHHHHhhcc----cCChhcHHHHHHHcCCCcHHHHHHH
Q 001227 987 PDAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNL 1029 (1119)
Q Consensus 987 Pd~eeR~eILk~ll~k~~----l~~d~dl~~LA~~TeGysg~DL~~L 1029 (1119)
.+.++-.++|........ ...+.....|+..+.|+ +-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 999999999998875543 11233467888888764 4455444
No 285
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.001 Score=75.77 Aligned_cols=125 Identities=10% Similarity=0.053 Sum_probs=82.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEecCccccccccchHHHHHHHHHHHHh-----cCCe
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPS 913 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~-------------~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k-----~~Ps 913 (1119)
.+.+||+|+.|.||+.+|+++++.+-+ .++.++.. +.. -.-..++.+.+.+.. ....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCce
Confidence 457899999999999999999988722 12223210 110 112234444444322 2447
Q ss_pred EEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHH
Q 001227 914 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 993 (1119)
Q Consensus 914 ILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~ 993 (1119)
|++||++|.+- ....+.|+..++. ++..+++|.+|+.++.+-+++++|+ ..+.+..|+.++..
T Consensus 93 vvII~~~e~m~------------~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTS------------NSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccC------------HHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 99999998872 1233455655555 3356777777778899999999999 67889999888777
Q ss_pred HHHHH
Q 001227 994 KIIRV 998 (1119)
Q Consensus 994 eILk~ 998 (1119)
+.+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 66654
No 286
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.71 E-value=0.00021 Score=86.63 Aligned_cols=172 Identities=21% Similarity=0.229 Sum_probs=93.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EecCcccc--ccc-
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITS--KWF- 893 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~-V~~s~L~s--~~~- 893 (1119)
.|.+++++|+.|.-.+.- .....+.+++-.+.--+|||+|.||||||.+.+.+++-+..-.+. =..+.-.+ -++
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 578899999887443321 222223333333444679999999999999999998876221111 00000000 000
Q ss_pred --cchHHHHH--HHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHh--hhhhccCCcccCCccEEEEEecCCC
Q 001227 894 --GEGEKYVK--AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE--FMVNWDGLRTKDKERVLVLAATNRP 967 (1119)
Q Consensus 894 --G~~e~~I~--~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~--Ll~~ldgl~~k~~~~VlVIaTTN~p 967 (1119)
+.+.+.+- .+.-. ...+|..|||+|.|- ......+-.++++ +-....|+-..-+.+.-|||++|+.
T Consensus 508 rd~dtkqlVLesGALVL---SD~GiCCIDEFDKM~-----dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~ 579 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVL---SDNGICCIDEFDKMS-----DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPI 579 (804)
T ss_pred ecCccceeeeecCcEEE---cCCceEEchhhhhhh-----HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccc
Confidence 00000000 00111 123799999999982 2223333333332 2233345554556778899999853
Q ss_pred C-------------CCcHHHHhccccccc-cCCCCHHHHHHHHHHH
Q 001227 968 F-------------DLDEAVVRRLPRRLM-VNLPDAPNREKIIRVI 999 (1119)
Q Consensus 968 ~-------------~Ld~aLlrRF~~~I~-v~lPd~eeR~eILk~l 999 (1119)
. .|++.+++||+.++- ++.||...-+.+-.++
T Consensus 580 ~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 580 RSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred cccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHH
Confidence 2 578999999986543 5777765334444433
No 287
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0012 Score=74.91 Aligned_cols=127 Identities=12% Similarity=0.099 Sum_probs=78.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------EE---------ecCcccccc-cc--chHHHHHHHHHHHHhc
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------NI---------SMSSITSKW-FG--EGEKYVKAVFSLASKI 910 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~elg~~fi-------~V---------~~s~L~s~~-~G--~~e~~I~~lF~~A~k~ 910 (1119)
+.+..+||+|| .||+.+|.++|..+-+.-- .+ +-+++.--. .| -.-..++.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 44578999996 6899999999987732110 00 001211000 01 1234566665555432
Q ss_pred ----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCC
Q 001227 911 ----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 986 (1119)
Q Consensus 911 ----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~l 986 (1119)
...|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 23699999999982 2234566666655 3456888889988999999999999 5677754
Q ss_pred CCHHHHHHHH
Q 001227 987 PDAPNREKII 996 (1119)
Q Consensus 987 Pd~eeR~eIL 996 (1119)
+.++..+++
T Consensus 163 -~~~~~~~~L 171 (290)
T PRK07276 163 -NEAYLIQLL 171 (290)
T ss_pred -cHHHHHHHH
Confidence 433333333
No 288
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.64 E-value=0.00031 Score=84.68 Aligned_cols=215 Identities=18% Similarity=0.223 Sum_probs=120.9
Q ss_pred hhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHH
Q 001227 795 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVA 873 (1119)
Q Consensus 795 ~~e~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l-~~P~~gILL~GPpGTGKT~LArAIA 873 (1119)
.....+.+...+.| .|.|.+.+|.-|.=.+.--.... ...+. .+.-.+|+|.|.|||||+-+.++++
T Consensus 332 ~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K~---a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~ 399 (764)
T KOG0480|consen 332 DENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHKS---AGEGTSLRGDINVCIVGDPGTGKSQFLKAVC 399 (764)
T ss_pred CchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCcccc---CCCCccccCCceEEEeCCCCccHHHHHHHHh
Confidence 34444445454444 68899999988754443211111 11111 1223469999999999999999998
Q ss_pred HHhCCcEEEEecCc----cccccccc--h-HHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhh
Q 001227 874 TEAGANFINISMSS----ITSKWFGE--G-EKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 945 (1119)
Q Consensus 874 ~elg~~fi~V~~s~----L~s~~~G~--~-e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~ 945 (1119)
.-+-..++..--+. |....... + +-.+ ..+.-.|. .+|..|||+|.+ ...+|.++...+++-..
T Consensus 400 ~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLAD---nGICCIDEFDKM-----d~~dqvAihEAMEQQtI 471 (764)
T KOG0480|consen 400 AFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLAD---NGICCIDEFDKM-----DVKDQVAIHEAMEQQTI 471 (764)
T ss_pred ccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEcc---CceEEechhccc-----ChHhHHHHHHHHHhhee
Confidence 76643333221111 11100000 0 0000 01122222 389999999998 22234444444443332
Q ss_pred hc--cCCcccCCccEEEEEecCCCC-------------CCcHHHHhcccccc-ccCCCCHHHHHHHHHHHHhhcccCChh
Q 001227 946 NW--DGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILAKEELASDV 1009 (1119)
Q Consensus 946 ~l--dgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRF~~~I-~v~lPd~eeR~eILk~ll~k~~l~~d~ 1009 (1119)
.+ .|+...-+.+.-||||+|+.. .|..++++||+..+ -++-|+...-..|-++++......++
T Consensus 472 SIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~- 550 (764)
T KOG0480|consen 472 SIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD- 550 (764)
T ss_pred hheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc-
Confidence 22 234333456778899998742 57789999998654 45888888888888887765332211
Q ss_pred cHHHHHHHcCCCcHHHHHHHHHHHH
Q 001227 1010 DLEGIANMADGYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 1010 dl~~LA~~TeGysg~DL~~L~~~Aa 1034 (1119)
-......|+..+++..+..|.
T Consensus 551 ----~~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 551 ----ATERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred ----cccccccccHHHHHHHHHHHH
Confidence 111125677778877777665
No 289
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.62 E-value=0.0022 Score=76.82 Aligned_cols=197 Identities=15% Similarity=0.208 Sum_probs=104.6
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ 887 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~------ 887 (1119)
.+.+++.-+.+-+.++++++.. + ..+.. .-+.+-+||+||+|||||+.++.+++++|..+++..-+.
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~-~---~~~~~---~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQ-V---AEFTP---KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHH-H---HHhcc---CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 4566777776666667666651 1 11111 112245899999999999999999999999988765221
Q ss_pred -cccccccchH------HHHHHHHHHHHh------------cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhcc
Q 001227 888 -ITSKWFGEGE------KYVKAVFSLASK------------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 948 (1119)
Q Consensus 888 -L~s~~~G~~e------~~I~~lF~~A~k------------~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ld 948 (1119)
+.....+-+. .........+.+ ..+.+|+|||+=..+... ..+..+.++..+. ..
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y~-s~- 225 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLYV-SI- 225 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHHH-hc-
Confidence 1111111111 111122222311 235699999997665321 2333444444222 11
Q ss_pred CCcccCCccEEEEEec-CCCCCCcHHHHh--------ccccccccCCCCHHHHHHHHHHHHhhcccC-------ChhcHH
Q 001227 949 GLRTKDKERVLVLAAT-NRPFDLDEAVVR--------RLPRRLMVNLPDAPNREKIIRVILAKEELA-------SDVDLE 1012 (1119)
Q Consensus 949 gl~~k~~~~VlVIaTT-N~p~~Ld~aLlr--------RF~~~I~v~lPd~eeR~eILk~ll~k~~l~-------~d~dl~ 1012 (1119)
..-++++|.|- ..++..++..+. |. ..|.|.+-...-..+.|+.++..+... ....++
T Consensus 226 -----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 226 -----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred -----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 12333443332 222333221111 44 357777777777788888887764322 233455
Q ss_pred HHHHHcCCCcHHHHHHHHHHH
Q 001227 1013 GIANMADGYSGSDLKNLCVTA 1033 (1119)
Q Consensus 1013 ~LA~~TeGysg~DL~~L~~~A 1033 (1119)
.++..+.| ||+..++..
T Consensus 300 ~i~~~s~G----DIRsAInsL 316 (634)
T KOG1970|consen 300 LICQGSGG----DIRSAINSL 316 (634)
T ss_pred HHHHhcCc----cHHHHHhHh
Confidence 56665555 555544443
No 290
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.62 E-value=9.8e-05 Score=81.63 Aligned_cols=133 Identities=24% Similarity=0.358 Sum_probs=79.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH------HHhCCcEEEEecCccccc-----cccchHHHHHHHHHHHHh--------cCCe
Q 001227 853 KGILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSK-----WFGEGEKYVKAVFSLASK--------IAPS 913 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA------~elg~~fi~V~~s~L~s~-----~~G~~e~~I~~lF~~A~k--------~~Ps 913 (1119)
..+||.||.|.||+.||+.|. +++.-+|+++||+.+.++ .+| .++..|.-|+. ...+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg----hvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG----HVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh----hhccccccchhhhhhhhccCCCc
Confidence 359999999999999999984 345789999999987654 222 23444444432 2347
Q ss_pred EEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhccccccccCC
Q 001227 914 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNL 986 (1119)
Q Consensus 914 ILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~l 986 (1119)
+||+|||..|. ..++..+.+.+.+-...--|....-...+-+|+-|-+. ...-+.+..|+ ..+.|.+
T Consensus 285 mlfldeigelg-----adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~l 358 (531)
T COG4650 285 MLFLDEIGELG-----ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTL 358 (531)
T ss_pred eEehHhhhhcC-----ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeec
Confidence 99999998883 23444444444432221111111112445566655321 12233444455 3577888
Q ss_pred CCHHHHHHH
Q 001227 987 PDAPNREKI 995 (1119)
Q Consensus 987 Pd~eeR~eI 995 (1119)
|...+|.+=
T Consensus 359 pgl~qr~ed 367 (531)
T COG4650 359 PGLRQRQED 367 (531)
T ss_pred cccccCccc
Confidence 888877653
No 291
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.00076 Score=75.08 Aligned_cols=122 Identities=7% Similarity=0.022 Sum_probs=77.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--------------Cccccccc---cchHHHHHHHHHHHHh--
Q 001227 849 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM--------------SSITSKWF---GEGEKYVKAVFSLASK-- 909 (1119)
Q Consensus 849 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~--------------s~L~s~~~---G~~e~~I~~lF~~A~k-- 909 (1119)
..++..+||+||.|+||..+|.++|+.+-+.--.-.| +++.--+. .-....++.+-.....
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc
Confidence 3466789999999999999999999887321000001 11111000 0112334444433321
Q ss_pred ---cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCC
Q 001227 910 ---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 986 (1119)
Q Consensus 910 ---~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~l 986 (1119)
....|++|+++|.|- ....|.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+.++.
T Consensus 84 ~e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~ 146 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLS 146 (261)
T ss_pred hhcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCC
Confidence 124799999999882 2345666666665 4567899999999999999999998 3455655
Q ss_pred C
Q 001227 987 P 987 (1119)
Q Consensus 987 P 987 (1119)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 5
No 292
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.001 Score=68.67 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
...++++|+||+|||+++..|+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3579999999999999999999777
No 293
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.50 E-value=0.00045 Score=78.33 Aligned_cols=161 Identities=21% Similarity=0.363 Sum_probs=93.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCcEEEEecCc--cc---
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT---EAGANFINISMSS--IT--- 889 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~---elg~~fi~V~~s~--L~--- 889 (1119)
.+.|..+..+.+.+++.+-. +......+++.||.|+|||++...... +.|-+|+.|...- ..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~----------~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTI----------LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHH----------HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 46677777788877776422 123446899999999999997665533 5566666554322 11
Q ss_pred ----------------cccccchHHHHHHHHHHHHhc---C-CeEEE-EccccccccCCCCCchhHHHHHHHHhhhhhcc
Q 001227 890 ----------------SKWFGEGEKYVKAVFSLASKI---A-PSVVF-VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 948 (1119)
Q Consensus 890 ----------------s~~~G~~e~~I~~lF~~A~k~---~-PsILf-IDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ld 948 (1119)
.+.+|.....+..+....+.. . -.||| +||||..++... ++++..+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r------------QtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR------------QTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh------------hHHHHHHH
Confidence 112233333344444333321 1 12555 589997754321 22333222
Q ss_pred CCcccCCccEEEEEecCCCC---CCcHHHHhccccc-ccc-CCCCHHHHHHHHHHHH
Q 001227 949 GLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRR-LMV-NLPDAPNREKIIRVIL 1000 (1119)
Q Consensus 949 gl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~~-I~v-~lPd~eeR~eILk~ll 1000 (1119)
.+....+.++.||+.|.+.+ .|...+.+||..+ |++ +.....+-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 22333457899999997765 4557778899765 443 3335777777877776
No 294
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.48 E-value=0.0015 Score=83.58 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=30.1
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001227 360 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 395 (1119)
Q Consensus 360 s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 395 (1119)
.+.+||.||||+ -..+|||+||+.++.++.-++.
T Consensus 347 ~~~lll~GppG~--GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPGV--GKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CceEEEECCCCC--CHHHHHHHHHHHhcCCeEEEeC
Confidence 357999999999 7999999999999999887774
No 295
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0028 Score=69.96 Aligned_cols=174 Identities=20% Similarity=0.217 Sum_probs=102.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCcccc---------ccccc--------hHHHHHHHHHHHHhc-CC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS---------KWFGE--------GEKYVKAVFSLASKI-AP 912 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg---~~fi~V~~s~L~s---------~~~G~--------~e~~I~~lF~~A~k~-~P 912 (1119)
-+.++|+-|+|||++.++++..+. .-.+.++...+.. ..... .++.-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 488999999999999997776663 2233444433211 11111 122223334444443 46
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC-c---HHHHhccccccccCCCC
Q 001227 913 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL-D---EAVVRRLPRRLMVNLPD 988 (1119)
Q Consensus 913 sILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L-d---~aLlrRF~~~I~v~lPd 988 (1119)
-++++||.+.|. ....+.++.+.+ +. .++. ..-.+++||-..-...+ - ..+..|++..|.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~n-l~--~~~~---~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTN-LE--EDSS---KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHh-hc--cccc---CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999883 223333333222 11 1111 11345555544211111 1 23334887668888889
Q ss_pred HHHHHHHHHHHHhhc----ccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHH
Q 001227 989 APNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1039 (1119)
Q Consensus 989 ~eeR~eILk~ll~k~----~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~air 1039 (1119)
.++-..+++..++.. .+.++.-+..+...+.| .+.-+.++|..|...+..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 998999999998873 34456667888888888 466888888877765544
No 296
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.41 E-value=0.0023 Score=85.39 Aligned_cols=53 Identities=23% Similarity=0.427 Sum_probs=41.9
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 878 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~ 878 (1119)
..+++++|++..++++.+++... ....+-+-|+|++|+|||+||+++++.+..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 45788999999999998877521 123356899999999999999999887743
No 297
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.37 E-value=0.0005 Score=80.33 Aligned_cols=103 Identities=21% Similarity=0.344 Sum_probs=57.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecCccccccccch------HHHHHHHHHHHHhcCCeEEEEcccc
Q 001227 849 TKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSITSKWFGEG------EKYVKAVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 849 ~~P~~gILL~GPpGTGKT~LArAIA~elg~-~fi~V~~s~L~s~~~G~~------e~~I~~lF~~A~k~~PsILfIDEID 921 (1119)
..+++|+.|+|++|+|||+|.-.....+.. .-..+.-..++....... ..-+..+-....+ .-.+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 346799999999999999999999887743 111122112221111100 0111222111111 22499999997
Q ss_pred ccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 001227 922 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 967 (1119)
Q Consensus 922 ~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p 967 (1119)
.- ..+.-..+.+++..+. ...+++|+|+|.+
T Consensus 138 V~-----DiaDAmil~rLf~~l~----------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----DIADAMILKRLFEALF----------KRGVVLVATSNRP 168 (362)
T ss_pred cc-----chhHHHHHHHHHHHHH----------HCCCEEEecCCCC
Confidence 43 2333344555555553 1568999999864
No 298
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.36 E-value=0.00073 Score=72.29 Aligned_cols=73 Identities=23% Similarity=0.434 Sum_probs=49.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccc-----------------------cchHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKYVKAVFSL 906 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~-----------------------G~~e~~I~~lF~~ 906 (1119)
.-++|+||||+|||+++..++... +..+++++...+....+ .+....+..+...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 92 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKF 92 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHHH
Confidence 458999999999999999987654 66788888764211100 0111224444555
Q ss_pred HHhcCCeEEEEcccccccc
Q 001227 907 ASKIAPSVVFVDEVDSMLG 925 (1119)
Q Consensus 907 A~k~~PsILfIDEID~L~~ 925 (1119)
+.+..+.+|+||-+..++.
T Consensus 93 ~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 93 IDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HhhcCccEEEEeCcHHHhH
Confidence 5566789999999998863
No 299
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.33 E-value=0.0011 Score=69.18 Aligned_cols=71 Identities=24% Similarity=0.374 Sum_probs=46.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc------cc-----------------------chH-----
Q 001227 855 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG-----------------------EGE----- 897 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~------~G-----------------------~~e----- 897 (1119)
+||+||||||||+|+..++.+. |.+++.++..+-.... +| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887654 6677777653211100 00 000
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccccccc
Q 001227 898 KYVKAVFSLASKIAPSVVFVDEVDSMLG 925 (1119)
Q Consensus 898 ~~I~~lF~~A~k~~PsILfIDEID~L~~ 925 (1119)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1134455555667899999999987753
No 300
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.28 E-value=0.00035 Score=90.00 Aligned_cols=139 Identities=25% Similarity=0.327 Sum_probs=83.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------cccc-cccc--hHH-HHHHHHHHHHhcCCeEEEEccccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSK-WFGE--GEK-YVKAVFSLASKIAPSVVFVDEVDS 922 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~------L~s~-~~G~--~e~-~I~~lF~~A~k~~PsILfIDEID~ 922 (1119)
+++||.|.||+|||+|..|+|+..|-.++.+|.++ +++. ..++ ++- ....-|-.|.+.. .-+++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehhhh
Confidence 46999999999999999999999999999999876 2221 1121 111 2333455555433 7899999963
Q ss_pred cccCCCCCchhHHHHHHHH----hhhhhccCCcccCCccEEEEEecCCC------CCCcHHHHhccccccccCCCCHHHH
Q 001227 923 MLGRRENPGEHEAMRKMKN----EFMVNWDGLRTKDKERVLVLAATNRP------FDLDEAVVRRLPRRLMVNLPDAPNR 992 (1119)
Q Consensus 923 L~~~r~s~~~~~~l~~ll~----~Ll~~ldgl~~k~~~~VlVIaTTN~p------~~Ld~aLlrRF~~~I~v~lPd~eeR 992 (1119)
- +...-+-++..+. .++-.++.. -+...+++|.||-|+. ..|+..++.|| .++.+...+.++.
T Consensus 1623 a-----SQSVlEGLNacLDhR~eayIPEld~~-f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~dDi 1695 (4600)
T COG5271 1623 A-----SQSVLEGLNACLDHRREAYIPELDKT-FDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTTDDI 1695 (4600)
T ss_pred h-----HHHHHHHHHHHHhhccccccccccce-eeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecccccchH
Confidence 2 1111111111111 111111111 1123678899988874 47999999999 4566666555554
Q ss_pred HHHHHHH
Q 001227 993 EKIIRVI 999 (1119)
Q Consensus 993 ~eILk~l 999 (1119)
..|....
T Consensus 1696 ~~Ia~~~ 1702 (4600)
T COG5271 1696 THIANKM 1702 (4600)
T ss_pred HHHHHhh
Confidence 4444443
No 301
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.28 E-value=0.00024 Score=68.61 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg 877 (1119)
|.|+||||+|||++|+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988774
No 302
>PF14516 AAA_35: AAA-like domain
Probab=97.28 E-value=0.003 Score=73.04 Aligned_cols=164 Identities=14% Similarity=0.144 Sum_probs=87.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-------------------------------
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG------------------------------- 896 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~------------------------------- 896 (1119)
|..-+.|+||..+|||+|...+.+.+ |...+.+++..+....+...
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44579999999999999999887655 78888888865432211111
Q ss_pred HHHHHHHHHHH---HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHH
Q 001227 897 EKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 973 (1119)
Q Consensus 897 e~~I~~lF~~A---~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~a 973 (1119)
.......|+.. .-..|-||+|||||.++.... ...+. ..++..+...-.. .....++.+|.+......+...
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~--~~~dF-~~~LR~~~~~~~~--~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ--IADDF-FGLLRSWYEQRKN--NPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc--hHHHH-HHHHHHHHHhccc--CcccceEEEEEecCcccccccC
Confidence 11122233321 123578999999999974321 01111 1112222111110 1112334444433222112111
Q ss_pred H-Hhcc--ccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCc
Q 001227 974 V-VRRL--PRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 1022 (1119)
Q Consensus 974 L-lrRF--~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGys 1022 (1119)
. .+-| ...+.++.-+.++-..+++.+-.. . ....++.|-..|.|..
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHP 233 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCH
Confidence 1 1123 344566666788888887766322 2 2334888999998864
No 303
>PHA00729 NTP-binding motif containing protein
Probab=97.27 E-value=0.00056 Score=74.75 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGAN 879 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~ 879 (1119)
.+++|+|+||||||+||.+|++.++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 479999999999999999999987633
No 304
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.26 E-value=0.00024 Score=77.48 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=42.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc--cccc--------cccchHHHHHHHHHHHHh--cCCeEEE
Q 001227 849 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLASK--IAPSVVF 916 (1119)
Q Consensus 849 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~--L~s~--------~~G~~e~~I~~lF~~A~k--~~PsILf 916 (1119)
.+.+..+||||+||+|||++|+.++. ..-++..+... +.+. .....-+.+...+..+.. ....+|+
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 34346699999999999999999862 12233333321 1100 001111223333333322 3357999
Q ss_pred Ecccccccc
Q 001227 917 VDEVDSMLG 925 (1119)
Q Consensus 917 IDEID~L~~ 925 (1119)
||+|+.|..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999998753
No 305
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.25 E-value=0.00024 Score=85.19 Aligned_cols=166 Identities=25% Similarity=0.393 Sum_probs=89.8
Q ss_pred hhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCC-hhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 001227 795 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQR-PELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 873 (1119)
Q Consensus 795 ~~e~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~-pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA 873 (1119)
...+..++++.+.| .|.|++.+|..+.-.+.--..+ +. .+.. .+.-.++||.|.|||||+-+.+.++
T Consensus 436 d~~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn~~--~khk-vRGDinvLL~GDPGTaKSQFLKY~e 503 (854)
T KOG0477|consen 436 DPPIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKNPG--GKHK-VRGDINVLLLGDPGTAKSQFLKYAE 503 (854)
T ss_pred CccHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccCCC--CCce-eccceeEEEecCCCccHHHHHHHHH
Confidence 33444455555555 5789999998886554321111 10 0000 1122459999999999999999998
Q ss_pred HHhCCcEEE---------EecCc----cccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHH
Q 001227 874 TEAGANFIN---------ISMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMK 940 (1119)
Q Consensus 874 ~elg~~fi~---------V~~s~----L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll 940 (1119)
+.....++. +.+.. +...|.-+. .++..|.+ +|.+|||+|.+-.+... .-++++.+
T Consensus 504 K~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEa-----GALVLADk---GvClIDEFDKMndqDRt-SIHEAMEQ-- 572 (854)
T KOG0477|consen 504 KTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEA-----GALVLADK---GVCLIDEFDKMNDQDRT-SIHEAMEQ-- 572 (854)
T ss_pred hcCcceeEeccCCccccceeEEEeeCCccceeeecc-----CeEEEccC---ceEEeehhhhhcccccc-hHHHHHHh--
Confidence 876433332 22111 122232211 12334444 89999999998433221 22332221
Q ss_pred HhhhhhccCCcccCCccEEEEEecCCC-----------C--CCcHHHHhccccccc
Q 001227 941 NEFMVNWDGLRTKDKERVLVLAATNRP-----------F--DLDEAVVRRLPRRLM 983 (1119)
Q Consensus 941 ~~Ll~~ldgl~~k~~~~VlVIaTTN~p-----------~--~Ld~aLlrRF~~~I~ 983 (1119)
+..-..-.|+.+.-..++.||||+|+. + +|.+.+++||+....
T Consensus 573 QSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcV 628 (854)
T KOG0477|consen 573 QSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCV 628 (854)
T ss_pred cchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeee
Confidence 001111112222234678999999872 1 566788999975433
No 306
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=97.25 E-value=0.00052 Score=81.03 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=64.4
Q ss_pred CceeeecceeeeecccccceeecCCC--CcccceEEeEeecCCcceeEEEEecCcceEEEc--CeecCCCceEEeecCCe
Q 001227 13 SHLSMTGAVFTVGHNRQCDLYLKDPS--ISKNLCRLRRIENGGPSGALLEITGGKGEVEVN--GNVHPKDSQVVLRGGDE 88 (1119)
Q Consensus 13 ~~~~~~~~~~tvg~~~~~~~~l~d~~--~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vn--g~~~~~~~~~~l~~gde 88 (1119)
....+....++||++..||+.|.|+. ||..||.|..- + ....+-+.+.|+ ++|| |..+.++..+.|+.||+
T Consensus 17 ~~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~-g~~~l~DlStNG--T~VN~sg~~l~~~~~~~L~~GD~ 91 (396)
T TIGR03354 17 AQKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--D-GAYLLTDLSTNG--VFLNGSGSPLGRGNPVRLEQGDR 91 (396)
T ss_pred eEEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--C-CEEEEEECCCCC--eEECCCCCCCCCCCceEcCCCCE
Confidence 35677788899999999999999999 99999999853 3 345666763344 8999 89999998999999999
Q ss_pred EEecCC
Q 001227 89 LVFSPS 94 (1119)
Q Consensus 89 ~vf~~~ 94 (1119)
|.+|..
T Consensus 92 I~iG~~ 97 (396)
T TIGR03354 92 LRLGDY 97 (396)
T ss_pred EEECCE
Confidence 999765
No 307
>CHL00181 cbbX CbbX; Provisional
Probab=97.25 E-value=0.0011 Score=75.13 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=78.2
Q ss_pred eEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCcchhhhhcccCCCC
Q 001227 574 LIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 647 (1119)
Q Consensus 574 ~Ilf~~die~~l~~------~~~~~~~l~~~L~~L~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~ 647 (1119)
-||||||++.+... ..+....|...++...++++||++++. +. .+.+++
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~-~~------------------~~~~~~------ 178 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYK-DR------------------MDKFYE------ 178 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc-HH------------------HHHHHh------
Confidence 49999999984321 245556666667777788999999761 00 001111
Q ss_pred ccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHHh---hhhhhhhcccchhHHHHHhhhCCCCcccchhh
Q 001227 648 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE---RDVETLKGQSNIISIRSVLSRNGLDCVDLESL 724 (1119)
Q Consensus 648 ~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~e---~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~L 724 (1119)
....|..+|+..|.++++..+.+...|...+. ..+.... ...+... .. ..
T Consensus 179 -------------~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~---i~----------~~ 231 (287)
T CHL00181 179 -------------SNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDY---IK----------KR 231 (287)
T ss_pred -------------cCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHH---HH----------Hh
Confidence 11467889999999999999888876665443 3332221 1111111 00 00
Q ss_pred hcccCCCC-HHHHHHHHhhhhhhhhhhcCC
Q 001227 725 CIKDQTLT-TEGVEKIVGWALSHHFMHCSE 753 (1119)
Q Consensus 725 A~~tkg~s-gadI~~Lv~~A~s~al~r~~~ 753 (1119)
.....|+ +-+++.++..|.....+|...
T Consensus 232 -~~~~~~GNaR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 232 -MEQPLFANARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred -CCCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 1134577 789999999988888777654
No 308
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.21 E-value=0.00031 Score=68.22 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFINISM 885 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~V~~ 885 (1119)
|+|.|+||+||||+|+.+|+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988877663
No 309
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0024 Score=81.28 Aligned_cols=139 Identities=22% Similarity=0.334 Sum_probs=97.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHHHhc-CCeEEEEcc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDE 919 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V~~s~L~s--~~~G~~e~~I~~lF~~A~k~-~PsILfIDE 919 (1119)
++-+|.|.||+|||.++.-+|+.. +..++.++...+.. ++-|+.+..++.+...+... ...||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 578999999999999999999876 34566777665443 35577788999999988844 456889999
Q ss_pred ccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-----CCCCcHHHHhccccccccCCCCHHHHHH
Q 001227 920 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREK 994 (1119)
Q Consensus 920 ID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~-----p~~Ld~aLlrRF~~~I~v~lPd~eeR~e 994 (1119)
++.+.+...+.+.. ...+.|.-.+ .+..+.+|+||.. ...-+|++-+||+ .+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~~~----d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYGAI----DAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcchHH----HHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 99987665442211 1222222111 1234899998853 2355789999994 57789999888777
Q ss_pred HHHHHHhh
Q 001227 995 IIRVILAK 1002 (1119)
Q Consensus 995 ILk~ll~k 1002 (1119)
||..+-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77766555
No 310
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.16 E-value=0.00098 Score=71.05 Aligned_cols=121 Identities=16% Similarity=0.213 Sum_probs=56.2
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEecCccccccccc----hHH-------------HHHHHHHHHHhcCCe
Q 001227 855 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 913 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAI-A~el---g~~fi~V~~s~L~s~~~G~----~e~-------------~I~~lF~~A~k~~Ps 913 (1119)
.|++|.||+|||+.|-.. .... |.+++. |...|.-..+.. .-. ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999977655 4333 666555 544222111111 000 001111111111468
Q ss_pred EEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccC
Q 001227 914 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 985 (1119)
Q Consensus 914 ILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~ 985 (1119)
+|+|||++.+++.+..... .....+ +++...+ ...+-||.+|-.+..++..+++..+..+++.
T Consensus 82 liviDEa~~~~~~r~~~~~--~~~~~~-~~l~~hR------h~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK--KVPEII-EFLAQHR------HYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGCC------CTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCccccc--cchHHH-HHHHHhC------cCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 9999999999987765211 112223 2222222 2457888899999999999988666555544
No 311
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.13 E-value=0.00098 Score=85.03 Aligned_cols=161 Identities=24% Similarity=0.279 Sum_probs=100.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccc-----c--hHHHHHHHH---HH--HHhcCCeEEEEccccc
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG-----E--GEKYVKAVF---SL--ASKIAPSVVFVDEVDS 922 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G-----~--~e~~I~~lF---~~--A~k~~PsILfIDEID~ 922 (1119)
+|++||||.|||+.+.++|.++|+.++++|.++..++... . ....+...| .. .......||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 6999999999999999999999999999999876554321 1 112233333 00 0111124999999999
Q ss_pred cccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001227 923 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 923 L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
+++ ... ..+..+..... ...+-+|+++|........-+.|....++|..|+.+.+..-+..++..
T Consensus 440 ~~~-~dR--------g~v~~l~~l~~------ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-EDR--------GGVSKLSSLCK------KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-hhh--------hhHHHHHHHHH------hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 875 111 12222222211 123456677776555544344443355899999999988877777765
Q ss_pred ccc-CChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 001227 1003 EEL-ASDVDLEGIANMADGYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 1003 ~~l-~~d~dl~~LA~~TeGysg~DL~~L~~~Aa 1034 (1119)
+.+ ..+..++++...+ ++||++.+..-.
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 443 3455677777776 556666555433
No 312
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.11 E-value=0.0075 Score=67.92 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=59.8
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEE-----EecCcc
Q 001227 819 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFIN-----ISMSSI 888 (1119)
Q Consensus 819 I~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~-----V~~s~L 888 (1119)
+.|+.-+++.+...+...+..+ . .+.|--+=|||++||||.+.++.||+.+ ..+++. .+++.-
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------N-PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------C-CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 6777777777777776433322 1 2233457789999999999999999887 223322 122210
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001227 889 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 889 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L 923 (1119)
+......++..+.+-..+...+.++.++||+|.|
T Consensus 157 -~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 157 -SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 0000112333444555556667799999999998
No 313
>PRK08118 topology modulation protein; Reviewed
Probab=97.10 E-value=0.0011 Score=69.35 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~ 885 (1119)
..|+|+||||+||||+|+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999998874
No 314
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.08 E-value=0.0024 Score=74.96 Aligned_cols=96 Identities=24% Similarity=0.429 Sum_probs=61.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc--------chHHHHHHHHHHHHhcCCe
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAPS 913 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~------~~G--------~~e~~I~~lF~~A~k~~Ps 913 (1119)
+..-+||+|+||+|||+|+..+|... +.++++++..+-... .++ ..+..+..++..+....|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 33568999999999999999998765 457778876542111 011 1122355666777778899
Q ss_pred EEEEccccccccCCC--CCchhHHHHHHHHhhhhh
Q 001227 914 VVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVN 946 (1119)
Q Consensus 914 ILfIDEID~L~~~r~--s~~~~~~l~~ll~~Ll~~ 946 (1119)
+|+||+|..++.... .++.....+.++..|...
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~l 195 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRF 195 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHH
Confidence 999999998864332 123333445555555443
No 315
>PHA02624 large T antigen; Provisional
Probab=97.07 E-value=0.00058 Score=83.27 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=66.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCC--CCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENP 930 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r--~s~ 930 (1119)
+.+||+||||||||+++.+|++.++...+.++++.-.+. |...-...-.+.+||++-.-.-.. -++
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 469999999999999999999999777788887652221 111111112578888884221100 000
Q ss_pred chhHHHHHHHHhhhhhccCC-cc----cCCcc-----EEEEEecCCCCCCcHHHHhccccccccCC
Q 001227 931 GEHEAMRKMKNEFMVNWDGL-RT----KDKER-----VLVLAATNRPFDLDEAVVRRLPRRLMVNL 986 (1119)
Q Consensus 931 ~~~~~l~~ll~~Ll~~ldgl-~~----k~~~~-----VlVIaTTN~p~~Ld~aLlrRF~~~I~v~l 986 (1119)
+ +- +. -+..+...+||- .- +...+ --+|.|||. ..++..+.-||..++.|..
T Consensus 500 G-~~-~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 G-QG-MN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred c-cc-cc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 0 00 00 012233344443 10 00011 123556665 5788888889988888753
No 316
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.06 E-value=0.039 Score=66.28 Aligned_cols=201 Identities=17% Similarity=0.220 Sum_probs=100.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---------------ccc-----chHHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---------------WFG-----EGEKYVKAVFSLA 907 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~---------------~~G-----~~e~~I~~lF~~A 907 (1119)
+|..++|+|++|+|||+++..+|..+ |..+..+++..+... .++ .....+......+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45779999999999999999998776 566666665432110 111 1122234444444
Q ss_pred HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccc-----c
Q 001227 908 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR-----L 982 (1119)
Q Consensus 908 ~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~-----I 982 (1119)
... .+|+||..-++. .. ..++.++.....-.. +..-++|+-++...+.++. .++|... +
T Consensus 174 ~~~--DvVIIDTAGr~~------~d----~~lm~El~~l~~~~~--pdevlLVvda~~gq~av~~--a~~F~~~l~i~gv 237 (437)
T PRK00771 174 KKA--DVIIVDTAGRHA------LE----EDLIEEMKEIKEAVK--PDEVLLVIDATIGQQAKNQ--AKAFHEAVGIGGI 237 (437)
T ss_pred hcC--CEEEEECCCccc------ch----HHHHHHHHHHHHHhc--ccceeEEEeccccHHHHHH--HHHHHhcCCCCEE
Confidence 443 799999986551 11 122333322222111 1234555554443322221 2234321 2
Q ss_pred ccCCCCHHHHH-HHHHHHHhh----------ccc--CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001227 983 MVNLPDAPNRE-KIIRVILAK----------EEL--ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1049 (1119)
Q Consensus 983 ~v~lPd~eeR~-eILk~ll~k----------~~l--~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~ 1049 (1119)
.+.-.|...|. .+|...... ..+ ....+.+.++...-|. +|+..|++.|....-.+- ..+...
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~--~~~~~~ 313 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEE--EEKDVE 313 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHH--HHHHHH
Confidence 33444444443 233332221 111 1234567777776443 588888887764311110 000000
Q ss_pred HHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccc
Q 001227 1050 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1086 (1119)
Q Consensus 1050 ~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS 1086 (1119)
... ....+++||..-+++++..
T Consensus 314 --~~~-------------~~~f~l~d~~~q~~~~~km 335 (437)
T PRK00771 314 --KMM-------------KGKFTLKDMYKQLEAMNKM 335 (437)
T ss_pred --HHH-------------cCCcCHHHHHHHHHHHHhc
Confidence 110 1248899999988877543
No 317
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.05 E-value=0.0027 Score=76.36 Aligned_cols=96 Identities=26% Similarity=0.433 Sum_probs=61.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc------cc--------chHHHHHHHHHHHHhcCCe
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG--------EGEKYVKAVFSLASKIAPS 913 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~------~G--------~~e~~I~~lF~~A~k~~Ps 913 (1119)
+..-+||+|+||+|||+|+..+|... +.++++++..+-.... ++ ..+..+..++.......|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 33568999999999999999998765 6788888875422111 11 0112355666677777899
Q ss_pred EEEEccccccccCCCC--CchhHHHHHHHHhhhhh
Q 001227 914 VVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVN 946 (1119)
Q Consensus 914 ILfIDEID~L~~~r~s--~~~~~~l~~ll~~Ll~~ 946 (1119)
+|+||+|..++..... ++.....+.++..|...
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ 193 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRL 193 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHH
Confidence 9999999988643211 22333344444444443
No 318
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.02 E-value=0.00041 Score=72.67 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA---GANF 880 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el---g~~f 880 (1119)
+++|+|+||+||||+++.++..+ +.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 58999999999999999998887 5553
No 319
>PRK07261 topology modulation protein; Provisional
Probab=96.98 E-value=0.0017 Score=68.06 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=29.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 886 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s 886 (1119)
.|+|.|+||+|||+||+.|+..++.+++.++.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 589999999999999999999999998877643
No 320
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.94 E-value=0.00086 Score=68.88 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
++..|+|+|+||||||++|+++|+.++++++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3468999999999999999999999999888644
No 321
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.88 E-value=0.0038 Score=67.74 Aligned_cols=35 Identities=37% Similarity=0.613 Sum_probs=29.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
..-++|+||||+|||+++..+|.+. +.+++++++.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3458999999999999999998654 7788888876
No 322
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.86 E-value=0.017 Score=74.74 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=82.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--Ccccc-cc------------cc---------------chHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISM--SSITS-KW------------FG---------------EGEKYVKA 902 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~--s~L~s-~~------------~G---------------~~e~~I~~ 902 (1119)
+-++|+||+|.|||+++...++..+ ++.-++. .+-.. .+ .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4699999999999999999887766 5544444 22000 00 00 00112233
Q ss_pred HHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccc
Q 001227 903 VFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 981 (1119)
Q Consensus 903 lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~ 981 (1119)
++..... ..|.+|+|||++.+- + ......+..++.. . +..+.+|.++...-.+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~~~---~----~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFLRH---Q----PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHHHh---C----CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333333 568999999999761 1 1122233333322 2 133444445543222321111111223
Q ss_pred cccC----CCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 001227 982 LMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 982 I~v~----lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg 1023 (1119)
+.+. ..+.++-.+++...+... .+..++..|...|+|+..
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHH
Confidence 4444 557888888887654322 245667889999998753
No 323
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.86 E-value=0.0041 Score=69.80 Aligned_cols=93 Identities=18% Similarity=0.295 Sum_probs=61.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-ccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SIT 889 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~~s-~L~ 889 (1119)
.++++++-.+...+.|.+++.. +...++|.||+|+|||++++++..... ..++.+.-+ ++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4677888777777777776542 223589999999999999999977763 334444221 111
Q ss_pred -----c-ccccchHHHHHHHHHHHHhcCCeEEEEcccc
Q 001227 890 -----S-KWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 890 -----s-~~~G~~e~~I~~lF~~A~k~~PsILfIDEID 921 (1119)
. ............+...+.+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 0 0011111235667777788999999999994
No 324
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.84 E-value=0.0016 Score=79.29 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.8
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 885 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-g~~fi~V~~ 885 (1119)
-|+|+.|++++++.+.+++..... ++....+-++|.||||+|||+||+.||+.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 578999999999999988743221 112233569999999999999999999887 456666543
No 325
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.80 E-value=0.0085 Score=65.84 Aligned_cols=73 Identities=25% Similarity=0.377 Sum_probs=47.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------cc-----------------------c--chH
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WF-----------------------G--EGE 897 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~------~~-----------------------G--~~e 897 (1119)
..-++|.||||||||+++..++... |.+.++++..+-... .+ + ..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKR 103 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHH
Confidence 3569999999999999986665433 566666664321000 00 0 013
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccc
Q 001227 898 KYVKAVFSLASKIAPSVVFVDEVDSML 924 (1119)
Q Consensus 898 ~~I~~lF~~A~k~~PsILfIDEID~L~ 924 (1119)
..+..+...+....|.+++||++-.++
T Consensus 104 ~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 104 KFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 344555666666678999999998764
No 326
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.76 E-value=0.0084 Score=67.98 Aligned_cols=81 Identities=17% Similarity=0.100 Sum_probs=51.6
Q ss_pred CeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCcchhhhhcccCCC
Q 001227 573 PLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 646 (1119)
Q Consensus 573 p~Ilf~~die~~l~~------~~~~~~~l~~~L~~L~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd 646 (1119)
+-||||||++.+... ..+..+.|-..|+.-.+.++||++++.. . ++
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~-~----------------------~~----- 173 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD-R----------------------MD----- 173 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-H----------------------HH-----
Confidence 359999999984221 2334445556666667789999987720 0 00
Q ss_pred CccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHH
Q 001227 647 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 691 (1119)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~ 691 (1119)
. .......+..+|+..|+++++.++.+...|...+
T Consensus 174 ~----------~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 174 S----------FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred H----------HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 0 1112256778889999999998888877555443
No 327
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.70 E-value=0.007 Score=69.70 Aligned_cols=74 Identities=26% Similarity=0.342 Sum_probs=50.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------------ccccchHHHHHHHHHHHHhcCCe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAPS 913 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s----------------~~~G~~e~~I~~lF~~A~k~~Ps 913 (1119)
+-++|+||||||||+||..++.+. +.+++.++...... ......++.+..+....+...+.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 458999999999999988776544 67777777643111 01122344455555555666789
Q ss_pred EEEEccccccccC
Q 001227 914 VVFVDEVDSMLGR 926 (1119)
Q Consensus 914 ILfIDEID~L~~~ 926 (1119)
+|+||-+..|.+.
T Consensus 136 lIVIDSv~al~~~ 148 (321)
T TIGR02012 136 IIVVDSVAALVPK 148 (321)
T ss_pred EEEEcchhhhccc
Confidence 9999999998753
No 328
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.69 E-value=0.0057 Score=73.41 Aligned_cols=170 Identities=25% Similarity=0.315 Sum_probs=101.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhh-hhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------EEEEecCc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------FINISMSS 887 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pel-f~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~---------fi~V~~s~ 887 (1119)
.|.|.+.+|+.|.-++.- --|. ...+.-.+.--+|||.|.|-+-|+-|.+++.+..... =+-+..+-
T Consensus 302 SI~GH~~vKkAillLLlG---GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG---GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred ccccHHHHHHHHHHHHhc---cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 578999999998765532 1111 1122222333569999999999999999997765221 11122111
Q ss_pred cccccccchHHHHH-HHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhc--cCCcccCCccEEEEEec
Q 001227 888 ITSKWFGEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAAT 964 (1119)
Q Consensus 888 L~s~~~G~~e~~I~-~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~l--dgl~~k~~~~VlVIaTT 964 (1119)
...+ ..+|..+. .....|.+ +|++|||+|.+ +.....+.-.++.+-.+.+ .|+...-+.++-|||++
T Consensus 379 TtD~--eTGERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAA 448 (818)
T KOG0479|consen 379 TTDQ--ETGERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAA 448 (818)
T ss_pred eecc--ccchhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeec
Confidence 1111 12233332 23344444 89999999998 3344445555555544444 36666667899999999
Q ss_pred CCCC-------------CCcHHHHhcccccccc-CCCCHHHHHHHHHHHH
Q 001227 965 NRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVIL 1000 (1119)
Q Consensus 965 N~p~-------------~Ld~aLlrRF~~~I~v-~lPd~eeR~eILk~ll 1000 (1119)
|+.+ .|++.+++||+..+.+ +--+...-..|-.+.+
T Consensus 449 NPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 449 NPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred CccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHH
Confidence 9743 5788999999865443 3334333333433333
No 329
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.65 E-value=0.0036 Score=67.09 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=43.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecC-cccc---------ccccchHHHHHHHHHHHHhcCCeEEEEcc
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGA----NFINISMS-SITS---------KWFGEGEKYVKAVFSLASKIAPSVVFVDE 919 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~----~fi~V~~s-~L~s---------~~~G~~e~~I~~lF~~A~k~~PsILfIDE 919 (1119)
-++|.||+|+|||+++++++..+.. .++.+..+ ++.. ...+.....+...+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3899999999999999999887742 22332221 1110 01122222345566677777899999999
Q ss_pred c
Q 001227 920 V 920 (1119)
Q Consensus 920 I 920 (1119)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 330
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.60 E-value=0.024 Score=65.33 Aligned_cols=59 Identities=25% Similarity=0.258 Sum_probs=40.2
Q ss_pred ccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001227 320 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 392 (1119)
Q Consensus 320 sfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~ 392 (1119)
+|++|-.- ++.+..|..+.-..... ....+.+||+||+|| ....||+++|+++++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG~--GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPGL--GKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCCc--cHHHHHHHHHHHhCCCeEE
Confidence 57776555 66666665444322111 123457999999999 7999999999999876543
No 331
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.59 E-value=0.0086 Score=69.07 Aligned_cols=74 Identities=27% Similarity=0.348 Sum_probs=50.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------------ccccchHHHHHHHHHHHHhcCCe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAPS 913 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s----------------~~~G~~e~~I~~lF~~A~k~~Ps 913 (1119)
+-++|+||||+|||+||-.++.+. +..++.++...-.. ......++.+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 458999999999999999876543 67788887643111 01122344444444455666789
Q ss_pred EEEEccccccccC
Q 001227 914 VVFVDEVDSMLGR 926 (1119)
Q Consensus 914 ILfIDEID~L~~~ 926 (1119)
+|+||-+-.|++.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999998753
No 332
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.58 E-value=0.0039 Score=62.14 Aligned_cols=27 Identities=56% Similarity=0.913 Sum_probs=23.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFI 881 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi 881 (1119)
|++.||||+|||++|+.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 789999999999999999999994443
No 333
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.58 E-value=0.0021 Score=66.47 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=36.9
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCcc
Q 001227 819 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 888 (1119)
Q Consensus 819 I~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~---fi~V~~s~L 888 (1119)
++|.++..+++...+.. .. ...++.++|+|++|+|||+|+++++..+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~----------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ----------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS----------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH----------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46888888888887641 11 2234789999999999999999987766322 777776553
No 334
>PRK13947 shikimate kinase; Provisional
Probab=96.56 E-value=0.0021 Score=66.41 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
+|+|.|+||+|||++|+.+|+.++++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997755
No 335
>PRK04296 thymidine kinase; Provisional
Probab=96.54 E-value=0.016 Score=61.68 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=40.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC----c----cccccccch-----HHHHHHHHHHHH--hcCCeEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS----S----ITSKWFGEG-----EKYVKAVFSLAS--KIAPSVV 915 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s----~----L~s~~~G~~-----e~~I~~lF~~A~--k~~PsIL 915 (1119)
-+|++||+|+|||+++..++..+ +..++.+... . +.+. .|.. ......++..+. ...+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 37899999999999998887765 5566655431 1 1111 1110 011223333332 2356899
Q ss_pred EEcccccc
Q 001227 916 FVDEVDSM 923 (1119)
Q Consensus 916 fIDEID~L 923 (1119)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999765
No 336
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.53 E-value=0.016 Score=68.92 Aligned_cols=121 Identities=20% Similarity=0.238 Sum_probs=69.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchh
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 933 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~ 933 (1119)
-++|+||.++|||++++.+.....-.++.++..++......- ......+..++......||||||+.+ ++-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v------~~W~ 110 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV------PDWE 110 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc------hhHH
Confidence 799999999999999988888775556666665544332221 12223333333334579999999876 1222
Q ss_pred HHHHHHHHhhhhhccCCcccCCccEEEEEecCCC--CCCcHHHHhccccccccCCCCHHHHHH
Q 001227 934 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP--FDLDEAVVRRLPRRLMVNLPDAPNREK 994 (1119)
Q Consensus 934 ~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p--~~Ld~aLlrRF~~~I~v~lPd~eeR~e 994 (1119)
..+ ..+ .+.. +.++++.+++... ..+.+.+..|. ..+.+.+.+..|...
T Consensus 111 ~~l----k~l---~d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 111 RAL----KYL---YDRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred HHH----HHH---Hccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 222 222 2221 1134544444321 23345555574 567777778877754
No 337
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.52 E-value=0.026 Score=63.05 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=28.5
Q ss_pred cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001227 351 KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 386 (1119)
Q Consensus 351 k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f 386 (1119)
+.+....+..+.|||.||||| ...+|||++|+.+
T Consensus 33 ~~g~~~~~~~~~vll~GppGt--GKTtlA~~ia~~l 66 (261)
T TIGR02881 33 EEGLKTSKQVLHMIFKGNPGT--GKTTVARILGKLF 66 (261)
T ss_pred HcCCCCCCCcceEEEEcCCCC--CHHHHHHHHHHHH
Confidence 344555666788999999999 7999999999987
No 338
>PRK03839 putative kinase; Provisional
Probab=96.52 E-value=0.0022 Score=67.21 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987764
No 339
>PRK13695 putative NTPase; Provisional
Probab=96.52 E-value=0.012 Score=61.37 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el 876 (1119)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987765
No 340
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.49 E-value=0.011 Score=59.17 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=38.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
++.|+.-+.+.+.+.+...+..+ . .+.|.-+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~-p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------N-PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------C-CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 57888888888877776543322 1 1222446799999999999999999986
No 341
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.48 E-value=0.017 Score=62.27 Aligned_cols=34 Identities=38% Similarity=0.616 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
.-++|+|+||+|||+++..+|.+. +.++++++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 458999999999999999998765 5677777654
No 342
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.48 E-value=0.04 Score=59.11 Aligned_cols=34 Identities=41% Similarity=0.602 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
+-.+|.||||||||++++.++..+ +..++.+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 458899999999999999987555 6677776653
No 343
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.44 E-value=0.0028 Score=64.03 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988655
No 344
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.44 E-value=0.0066 Score=71.29 Aligned_cols=72 Identities=22% Similarity=0.420 Sum_probs=44.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecCc----------------cccccccchHHHHH---HHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSS----------------ITSKWFGEGEKYVK---AVFSLAS 908 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~-----~fi~V~~s~----------------L~s~~~G~~e~~I~---~lF~~A~ 908 (1119)
...||+||||+|||+|++.|++.... ..+.+...+ +.+.+-...+..++ .+++.|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999987632 222222211 11222222333333 3444444
Q ss_pred hc----CCeEEEEccccccc
Q 001227 909 KI----APSVVFVDEVDSML 924 (1119)
Q Consensus 909 k~----~PsILfIDEID~L~ 924 (1119)
.. ...+||||||++|.
T Consensus 250 ~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHcCCCEEEEEEChHHHH
Confidence 32 45799999999986
No 345
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.42 E-value=0.014 Score=61.39 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=46.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc-----------------ccchHHHHHHHHHHHHhcCCeEEEE
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-----------------FGEGEKYVKAVFSLASKIAPSVVFV 917 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~-----------------~G~~e~~I~~lF~~A~k~~PsILfI 917 (1119)
+|+.|++|+|||++|..++...+.+++++....-...- ..+....+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 68999999999999999998888788888765422110 0111123333332211 4679999
Q ss_pred ccccccccCC
Q 001227 918 DEVDSMLGRR 927 (1119)
Q Consensus 918 DEID~L~~~r 927 (1119)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887543
No 346
>PRK00625 shikimate kinase; Provisional
Probab=96.40 E-value=0.003 Score=66.49 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
.|+|.|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 347
>PRK13948 shikimate kinase; Provisional
Probab=96.40 E-value=0.0034 Score=66.65 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 849 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 849 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
..++..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456688999999999999999999999999998665
No 348
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.0026 Score=65.01 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
++||++|-||||||+++..||...+++++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999988775
No 349
>PRK10536 hypothetical protein; Provisional
Probab=96.35 E-value=0.031 Score=62.47 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=31.7
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~e 875 (1119)
.+..|-+.......+...+.. ..-+++.||+|||||+||.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~----------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES----------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc----------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 334455565666665554431 126999999999999999999875
No 350
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.35 E-value=0.0087 Score=78.11 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=86.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--cccccc----h---HHHHHHHHHHHHhcCCeEEEEccccccc
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGE----G---EKYVKAVFSLASKIAPSVVFVDEVDSML 924 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~--s~~~G~----~---e~~I~~lF~~A~k~~PsILfIDEID~L~ 924 (1119)
.+||.||..+|||+....+|++.|..|+.+|-.+.. ..|+|. . -..-..+...|.+.. --|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 599999999999999999999999999999975421 122221 1 011223444554433 57899999632
Q ss_pred cCCCCCchhHHHHHHHHhhhhhccCCc-------ccCCccEEEEEecCCCC------CCcHHHHhccccccccCCCCHHH
Q 001227 925 GRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPN 991 (1119)
Q Consensus 925 ~~r~s~~~~~~l~~ll~~Ll~~ldgl~-------~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~v~lPd~ee 991 (1119)
+...-+++++++ ..-+.+. -.+...+++.||-|+|. -|..|++.|| ..++|.--..++
T Consensus 968 ----pTDVLEaLNRLL----DDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedE 1038 (4600)
T COG5271 968 ----PTDVLEALNRLL----DDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDE 1038 (4600)
T ss_pred ----cHHHHHHHHHhh----ccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHH
Confidence 112233333333 2211111 12346788888889874 5778999999 567777666777
Q ss_pred HHHHHHHHH
Q 001227 992 REKIIRVIL 1000 (1119)
Q Consensus 992 R~eILk~ll 1000 (1119)
...||+..+
T Consensus 1039 le~ILh~rc 1047 (4600)
T COG5271 1039 LEEILHGRC 1047 (4600)
T ss_pred HHHHHhccC
Confidence 777776543
No 351
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=96.35 E-value=0.0058 Score=50.67 Aligned_cols=51 Identities=31% Similarity=0.439 Sum_probs=40.6
Q ss_pred eeeeccc-ccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeec
Q 001227 22 FTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVH 75 (1119)
Q Consensus 22 ~tvg~~~-~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~ 75 (1119)
++||+.. .|++.|.|+.+|..+|+|..-. .+ ...++-.++..-++|||+.+
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~-~~--~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDG-GG--RFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECC-CC--eEEEEECCCCCCeeECCEEC
Confidence 5899999 9999999999999999998543 23 35567677555689999864
No 352
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.34 E-value=0.026 Score=61.31 Aligned_cols=73 Identities=22% Similarity=0.417 Sum_probs=49.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccc--------------------------c-------c
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK--------------------------W-------F 893 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s~L~s~--------------------------~-------~ 893 (1119)
+..-+||.||||+|||.|+..++.+. |-+++.++..+-... . .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 33569999999999999999875433 778777776431000 0 0
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001227 894 GEGEKYVKAVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 894 G~~e~~I~~lF~~A~k~~PsILfIDEID~L 923 (1119)
...+..+..+...+....+.+++||.+..+
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 122445556666667778899999999998
No 353
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.32 E-value=0.019 Score=60.29 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=46.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHH--------------------HHHHHHHHHHhcCCe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 913 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~--------------------~I~~lF~~A~k~~Ps 913 (1119)
.+|+.|+||+|||++|..++..++.+++++........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 58999999999999999999998888777765442211 1111 123333221 23357
Q ss_pred EEEEcccccccc
Q 001227 914 VVFVDEVDSMLG 925 (1119)
Q Consensus 914 ILfIDEID~L~~ 925 (1119)
+++||-+..|..
T Consensus 79 ~VlID~Lt~~~~ 90 (170)
T PRK05800 79 CVLVDCLTTWVT 90 (170)
T ss_pred EEEehhHHHHHH
Confidence 899999998864
No 354
>PRK14532 adenylate kinase; Provisional
Probab=96.31 E-value=0.0035 Score=66.05 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+|+|.||||+|||++|+.||+.+|++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999998766543
No 355
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.30 E-value=0.017 Score=69.60 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=51.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------cccc--------hHHHHHHHHHHHHhcCCe
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAPS 913 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~------~~G~--------~e~~I~~lF~~A~k~~Ps 913 (1119)
+..-+||.|+||+|||+|+..++... +.++++++..+-... .++- .+..+..+...+.+..|.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~ 172 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQ 172 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCc
Confidence 43558999999999999999987655 457778876442111 0110 112345566666777899
Q ss_pred EEEEcccccccc
Q 001227 914 VVFVDEVDSMLG 925 (1119)
Q Consensus 914 ILfIDEID~L~~ 925 (1119)
+|+||.|..++.
T Consensus 173 ~vVIDSIq~l~~ 184 (454)
T TIGR00416 173 ACVIDSIQTLYS 184 (454)
T ss_pred EEEEecchhhcc
Confidence 999999998864
No 356
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.30 E-value=0.007 Score=67.57 Aligned_cols=97 Identities=21% Similarity=0.368 Sum_probs=59.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-Ccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI 888 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~~-s~L 888 (1119)
..++++++-.....+.+.+++...+ +...++|+.||+|+|||+++++++.... ..++.+.- .++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3467777766666666666655311 1235799999999999999999998873 34444432 111
Q ss_pred ccc------ccc-chHHHHHHHHHHHHhcCCeEEEEcccc
Q 001227 889 TSK------WFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 889 ~s~------~~G-~~e~~I~~lF~~A~k~~PsILfIDEID 921 (1119)
.-. ... ........++..+.+..|.+|+|.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 110 011 123346677788888999999999994
No 357
>PRK13949 shikimate kinase; Provisional
Probab=96.28 E-value=0.0035 Score=65.59 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
+.|+|.|+||+|||++++.+|+.++++++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988876
No 358
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.28 E-value=0.048 Score=60.45 Aligned_cols=132 Identities=16% Similarity=0.238 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcccccc--------c-c-----chHHHHHH----HHHHHH--
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKW--------F-G-----EGEKYVKA----VFSLAS-- 908 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~s~L~s~~--------~-G-----~~e~~I~~----lF~~A~-- 908 (1119)
.+-++.+.|++|||||+++..+...+. +..+.+-++.....+ + . +.+..+.. +-..+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 345799999999999999999987763 333333333221111 0 0 00111111 111111
Q ss_pred -h---cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccc
Q 001227 909 -K---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 984 (1119)
Q Consensus 909 -k---~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v 984 (1119)
. .++.+|++|++..- ..-...+..+... | ..-++-+|..+.....+++.++.-.+..+.+
T Consensus 92 ~~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~ 155 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRSNIDYFIIF 155 (241)
T ss_pred cccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhhcceEEEEe
Confidence 1 22579999997420 0112233344322 1 2245788888888889999987766666656
Q ss_pred CCCCHHHHHHHHHHH
Q 001227 985 NLPDAPNREKIIRVI 999 (1119)
Q Consensus 985 ~lPd~eeR~eILk~l 999 (1119)
+ -+..+...+++.+
T Consensus 156 ~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 156 N-NSKRDLENIYRNM 169 (241)
T ss_pred c-CcHHHHHHHHHhc
Confidence 5 3555555555544
No 359
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.28 E-value=0.0035 Score=65.48 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 889 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~ 889 (1119)
|+|+||||+|||++|+.||..+++.+ +++.++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHH
Confidence 78999999999999999999998655 4444443
No 360
>PHA02774 E1; Provisional
Probab=96.27 E-value=0.031 Score=68.42 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~-V~~ 885 (1119)
+.++|+||||||||++|.+|++.++..++. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 479999999999999999999999655544 553
No 361
>PRK06217 hypothetical protein; Validated
Probab=96.26 E-value=0.0041 Score=65.56 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
.|+|.|+||+|||++|++|++.++++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999987665
No 362
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.25 E-value=0.036 Score=63.92 Aligned_cols=100 Identities=17% Similarity=0.314 Sum_probs=55.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEecCccccc-------cccchHHHHHHHHHHHHhcCCeEEEEcccc
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITSK-------WFGEGEKYVKAVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~elg~~f-i~V~~s~L~s~-------~~G~~e~~I~~lF~~A~k~~PsILfIDEID 921 (1119)
.+++|+.|+|+-|.|||+|.-..-..+..+- ..+..-.++.. ..|+. .-+..+-.... ..-.||+|||++
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeeee
Confidence 4779999999999999999999887764322 11211111111 11111 00111111111 112599999996
Q ss_pred ccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001227 922 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 966 (1119)
Q Consensus 922 ~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~ 966 (1119)
.= ..+.-..+.++++.|+. ..|.+++|+|.
T Consensus 141 Vt-----DI~DAMiL~rL~~~Lf~----------~GV~lvaTSN~ 170 (367)
T COG1485 141 VT-----DIADAMILGRLLEALFA----------RGVVLVATSNT 170 (367)
T ss_pred ec-----ChHHHHHHHHHHHHHHH----------CCcEEEEeCCC
Confidence 32 22334455566666652 46899999986
No 363
>PRK14974 cell division protein FtsY; Provisional
Probab=96.24 E-value=0.033 Score=64.73 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
+.-++|.||+|+|||+++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4679999999999999999888765 5566556544
No 364
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.24 E-value=0.18 Score=57.95 Aligned_cols=127 Identities=19% Similarity=0.173 Sum_probs=67.2
Q ss_pred HHHHHHHHHhc---CCeEEEEccccccccCCC-----CCchhHHHHHHHHhhhhhccCCcccCCccEE-EEEecCC---C
Q 001227 900 VKAVFSLASKI---APSVVFVDEVDSMLGRRE-----NPGEHEAMRKMKNEFMVNWDGLRTKDKERVL-VLAATNR---P 967 (1119)
Q Consensus 900 I~~lF~~A~k~---~PsILfIDEID~L~~~r~-----s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~Vl-VIaTTN~---p 967 (1119)
+..++.+.... .|.++-||++..|+.... ....+..-..+...|+..+.+-..-.++.++ .+++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 44455555432 366777999999996531 0111222334555555554433322233332 2555522 2
Q ss_pred C--CCcHHHHhccc---------------------cccccCCCCHHHHHHHHHHHHhhcccCC----hhcHHHHHHHcCC
Q 001227 968 F--DLDEAVVRRLP---------------------RRLMVNLPDAPNREKIIRVILAKEELAS----DVDLEGIANMADG 1020 (1119)
Q Consensus 968 ~--~Ld~aLlrRF~---------------------~~I~v~lPd~eeR~eILk~ll~k~~l~~----d~dl~~LA~~TeG 1020 (1119)
. .++.++..+-. ..+.++..+.+|-..+++.+....-+.. ....+.+...+.
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~- 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN- 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-
Confidence 2 45555554321 1567888889999999999877644332 222344444444
Q ss_pred CcHHHHH
Q 001227 1021 YSGSDLK 1027 (1119)
Q Consensus 1021 ysg~DL~ 1027 (1119)
.+++++.
T Consensus 301 GNp~el~ 307 (309)
T PF10236_consen 301 GNPRELE 307 (309)
T ss_pred CCHHHhc
Confidence 4566654
No 365
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.24 E-value=0.03 Score=61.61 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=28.6
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEec
Q 001227 846 GQLTKPCKGILLFGPPGTGKTMLAKAVATE---AGANFINISM 885 (1119)
Q Consensus 846 ~~l~~P~~gILL~GPpGTGKT~LArAIA~e---lg~~fi~V~~ 885 (1119)
+|+ .+...+||+||||+|||++|..++.+ .|-+.++++.
T Consensus 16 GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 453 34567999999999999999877654 2666666654
No 366
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.21 E-value=0.014 Score=68.66 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=45.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-ccc-----------cccccchHHHHHHHHHHHHhcCCeEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVVF 916 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg-----~~fi~V~~s-~L~-----------s~~~G~~e~~I~~lF~~A~k~~PsILf 916 (1119)
.+|++||+|+|||+++++++.+.. ..++.+.-+ ++. ..-.|............+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999987762 344544322 110 011122222355667778888999999
Q ss_pred Ecccc
Q 001227 917 VDEVD 921 (1119)
Q Consensus 917 IDEID 921 (1119)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99994
No 367
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.028 Score=66.43 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=66.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecCcccc----------c------cccchHHHHHHHHHHHH
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSITS----------K------WFGEGEKYVKAVFSLAS 908 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el-------g~~fi~V~~s~L~s----------~------~~G~~e~~I~~lF~~A~ 908 (1119)
+..++|+||+|+|||+++..+|..+ +..+..+++..... . ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4579999999999999999998765 23443333322110 0 0111122233333332
Q ss_pred hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccc----ccccc
Q 001227 909 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP----RRLMV 984 (1119)
Q Consensus 909 k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~----~~I~v 984 (1119)
..-.+|+||.+.+.. ..... +.++...++.... +...++|+.+|.....+...+ .+|. ..+.+
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~~~-~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVKEIF-HQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHHH-HHhcCCCCCEEEE
Confidence 234799999998662 11111 2222222222221 225678888887766666433 4331 23444
Q ss_pred CCCCHHHH
Q 001227 985 NLPDAPNR 992 (1119)
Q Consensus 985 ~lPd~eeR 992 (1119)
.-.|...+
T Consensus 320 TKlDet~~ 327 (388)
T PRK12723 320 TKLDETTC 327 (388)
T ss_pred EeccCCCc
Confidence 44454444
No 368
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.21 E-value=0.0092 Score=67.26 Aligned_cols=68 Identities=26% Similarity=0.380 Sum_probs=43.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-cCccccc-------cccc------hHHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSK-------WFGE------GEKYVKAVFSLAS 908 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~----------~fi~V~-~s~L~s~-------~~G~------~e~~I~~lF~~A~ 908 (1119)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++... ..+. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999987732 222221 0111110 0110 1112345677777
Q ss_pred hcCCeEEEEccc
Q 001227 909 KIAPSVVFVDEV 920 (1119)
Q Consensus 909 k~~PsILfIDEI 920 (1119)
.+.|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999997
No 369
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.20 E-value=0.036 Score=61.80 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGA 878 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~ 878 (1119)
..++|+||+|+|||+|++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46999999999999999999988743
No 370
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.20 E-value=0.017 Score=70.16 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=61.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-cc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 888 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~~s-~L 888 (1119)
..++++++-.++..+.+.+++.. +..-+|++||+|+|||++.+++..++. .+++.+.-+ ++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45778888788888888776542 222379999999999999998877763 345444321 11
Q ss_pred c-----ccccc-chHHHHHHHHHHHHhcCCeEEEEcccc
Q 001227 889 T-----SKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 889 ~-----s~~~G-~~e~~I~~lF~~A~k~~PsILfIDEID 921 (1119)
. ...+. ............+.++.|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 10011 111234456666778899999999994
No 371
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.20 E-value=0.015 Score=69.21 Aligned_cols=164 Identities=24% Similarity=0.313 Sum_probs=89.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec----Ccccccc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM----SSITSKW 892 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l-~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~----s~L~s~~ 892 (1119)
.|.|.+++|+.+.-++.---+. .+ ..|+ .+..-+|||-|.|||-|+-|.+-+-+-.-.-++.--- +-|....
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK--~L-pDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV 408 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRK--RL-PDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASV 408 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccc--cC-CCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeE
Confidence 5789999999987765421110 01 1111 1223469999999999999999886654322221100 0011000
Q ss_pred ccch---HHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHH--hhhhhccCCcccCCccEEEEEecCC
Q 001227 893 FGEG---EKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN--EFMVNWDGLRTKDKERVLVLAATNR 966 (1119)
Q Consensus 893 ~G~~---e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~--~Ll~~ldgl~~k~~~~VlVIaTTN~ 966 (1119)
.... +-++ ......|. .+|+.|||+|.+= ..+.-+.-..+. +.-..-.|+.+.-+.+.-|+|++|+
T Consensus 409 ~RD~~tReFylEGGAMVLAD---gGVvCIDEFDKMr-----e~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 409 IRDPSTREFYLEGGAMVLAD---GGVVCIDEFDKMR-----EDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred EecCCcceEEEecceEEEec---CCEEEeehhhccC-----chhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCC
Confidence 0000 0000 00112222 3899999999982 122222222222 2233344666656678889999987
Q ss_pred CC-------------CCcHHHHhccccccccCCCCHHHH
Q 001227 967 PF-------------DLDEAVVRRLPRRLMVNLPDAPNR 992 (1119)
Q Consensus 967 p~-------------~Ld~aLlrRF~~~I~v~lPd~eeR 992 (1119)
+. ++.+.+++||+.++.+.--..++|
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~ 519 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEER 519 (729)
T ss_pred ccccccccCCcccccchhhhHhhhccEEEEEeccCcchh
Confidence 42 234899999998877765444433
No 372
>PRK14531 adenylate kinase; Provisional
Probab=96.18 E-value=0.0049 Score=65.03 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
..|+|+||||+|||++++.||..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999877653
No 373
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=0.012 Score=64.00 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=47.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEecC-ccccccccc-------------hHHHHHHHHHHHHhc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISMS-SITSKWFGE-------------GEKYVKAVFSLASKI 910 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el--g------~~fi~V~~s-~L~s~~~G~-------------~e~~I~~lF~~A~k~ 910 (1119)
.+.||.||||+|||++.+-||+-+ | ..+..++-. ++.+...|. ..-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 479999999999999999999876 2 234444432 222221111 112334466777889
Q ss_pred CCeEEEEcccccc
Q 001227 911 APSVVFVDEVDSM 923 (1119)
Q Consensus 911 ~PsILfIDEID~L 923 (1119)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999644
No 374
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.17 E-value=0.043 Score=60.05 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--------------c-------------------cc
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--------------W-------------------FG 894 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~--------------~-------------------~G 894 (1119)
+..-++++|+||+|||+++..++.+. +.++++++..+-... + ..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 33569999999999999999997553 667777665331100 0 00
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEccccccc
Q 001227 895 EGEKYVKAVFSLASKIAPSVVFVDEVDSML 924 (1119)
Q Consensus 895 ~~e~~I~~lF~~A~k~~PsILfIDEID~L~ 924 (1119)
..+..+..+........|.+|+||++..+.
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 112334444445555688999999998663
No 375
>PRK06762 hypothetical protein; Provisional
Probab=96.16 E-value=0.012 Score=60.74 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 889 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~ 889 (1119)
.-|+|+|+||+|||++|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4589999999999999999999996666666654443
No 376
>PRK05973 replicative DNA helicase; Provisional
Probab=96.16 E-value=0.04 Score=61.05 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
.+..-+||.|+||+|||+++-.++.+. |.++++++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 344569999999999999999886654 7777776654
No 377
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.16 E-value=0.027 Score=60.62 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=40.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcEE-------------EEecCc-cccc--cccchHHHHHHHHHHHHhcC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE-----AGANFI-------------NISMSS-ITSK--WFGEGEKYVKAVFSLASKIA 911 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e-----lg~~fi-------------~V~~s~-L~s~--~~G~~e~~I~~lF~~A~k~~ 911 (1119)
+-++|+||+|+|||+|.+.|+.. .|.++- .+...+ +... .+......+..++..+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 46899999999999999999743 344321 111111 0000 01111134555666665457
Q ss_pred CeEEEEcccc
Q 001227 912 PSVVFVDEVD 921 (1119)
Q Consensus 912 PsILfIDEID 921 (1119)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999974
No 378
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.15 E-value=0.035 Score=60.61 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 886 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s 886 (1119)
+..-++|.|+||+|||+++..++... +.+++.+++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 44568999999999999999886544 7788887753
No 379
>PRK10867 signal recognition particle protein; Provisional
Probab=96.15 E-value=0.14 Score=61.42 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccc---------------cc-----cchHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK---------------WF-----GEGEKYVKAVFSL 906 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s~L~s~---------------~~-----G~~e~~I~~lF~~ 906 (1119)
++.-+++.|++|+|||+++..+|..+ |..+..+++...... ++ .............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45679999999999999888887654 566766666432111 01 1123334455566
Q ss_pred HHhcCCeEEEEcccccc
Q 001227 907 ASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 907 A~k~~PsILfIDEID~L 923 (1119)
++.....+|+||=.-++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66666789999988655
No 380
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.015 Score=68.41 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..++|.||+|+|||+++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999998764
No 381
>PRK13764 ATPase; Provisional
Probab=96.13 E-value=0.015 Score=72.01 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=41.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe------cCccccccccchHHHHHHHHHHHHhcCCeEEEEcccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS------MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~------~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID 921 (1119)
.++|++||+|+||||++++++..+. ..+..+. .......+. ............+.+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998773 3332332 111111111 000112223333457789999999994
No 382
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.12 E-value=0.032 Score=64.75 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=44.5
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 887 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~ 887 (1119)
.+.+.+.+...|..++-. .. ..-|..+.|+|..|||||++.+.+.+.++.+.+.++|-+
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 345567777777776541 11 123456899999999999999999999999999888744
No 383
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.12 E-value=0.0046 Score=64.94 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
|+|+||||+|||++|+.||..++++++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998776554
No 384
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.11 E-value=0.005 Score=61.44 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
|.|.|+||+|||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 385
>PRK09354 recA recombinase A; Provisional
Probab=96.10 E-value=0.031 Score=65.06 Aligned_cols=73 Identities=25% Similarity=0.322 Sum_probs=49.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------------ccccchHHHHHHHHHHHHhcCCe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAPS 913 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s----------------~~~G~~e~~I~~lF~~A~k~~Ps 913 (1119)
+-++|+||+|||||+|+-.++.+. |...++++...-.. ......++.+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 458999999999999999876443 77777777654111 01122344444444445566789
Q ss_pred EEEEcccccccc
Q 001227 914 VVFVDEVDSMLG 925 (1119)
Q Consensus 914 ILfIDEID~L~~ 925 (1119)
+|+||-|-.|.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999999875
No 386
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.06 E-value=0.011 Score=56.69 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el 876 (1119)
+++|+||+|+|||+++..++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888776655
No 387
>PRK14530 adenylate kinase; Provisional
Probab=96.06 E-value=0.0058 Score=66.10 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.|+|.||||+|||++|+.||+.++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999887754
No 388
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.06 E-value=0.011 Score=68.62 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=44.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC-ccc---------cccccchHHHHHHHHHHHHhcCCeEEEEc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 918 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg----~~fi~V~~s-~L~---------s~~~G~~e~~I~~lF~~A~k~~PsILfID 918 (1119)
..+||.||+|+|||+++++++..+. ..++.+.-+ ++. ....+.........+..+.+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4689999999999999999988764 233333211 110 11112222235556677778899999999
Q ss_pred cc
Q 001227 919 EV 920 (1119)
Q Consensus 919 EI 920 (1119)
|+
T Consensus 203 Ei 204 (343)
T TIGR01420 203 EM 204 (343)
T ss_pred CC
Confidence 99
No 389
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.06 E-value=0.02 Score=65.55 Aligned_cols=68 Identities=25% Similarity=0.393 Sum_probs=46.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-cc-------ccccccchHHHHHHHHHHHHhcCCeEEEEcc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SI-------TSKWFGEGEKYVKAVFSLASKIAPSVVFVDE 919 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg-----~~fi~V~~s-~L-------~s~~~G~~e~~I~~lF~~A~k~~PsILfIDE 919 (1119)
.++|+.||+|+|||+++++++.... ..++.+.-. ++ ..-..+........++..+.+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5899999999999999999998762 233333211 11 0000111111566788888899999999999
Q ss_pred c
Q 001227 920 V 920 (1119)
Q Consensus 920 I 920 (1119)
+
T Consensus 213 i 213 (299)
T TIGR02782 213 V 213 (299)
T ss_pred c
Confidence 9
No 390
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.03 E-value=0.0056 Score=61.92 Aligned_cols=28 Identities=43% Similarity=0.782 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
++|.|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 391
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.02 E-value=0.035 Score=72.47 Aligned_cols=139 Identities=19% Similarity=0.280 Sum_probs=81.9
Q ss_pred CCceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhc--------------CCeEE
Q 001227 851 PCKGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI--------------APSVV 915 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~L-ArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~--------------~PsIL 915 (1119)
..++++++||||+|||+| ..++-.++...++.+|.+.-.. ++..+..+-...... +-.||
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheEE
Confidence 347899999999999995 5577777877888777543111 111222222221111 11499
Q ss_pred EEccccccccCCCCCchhH---HHHHHHHh------hhhhccCCcccCCccEEEEEecCCCCC-----CcHHHHhccccc
Q 001227 916 FVDEVDSMLGRRENPGEHE---AMRKMKNE------FMVNWDGLRTKDKERVLVLAATNRPFD-----LDEAVVRRLPRR 981 (1119)
Q Consensus 916 fIDEID~L~~~r~s~~~~~---~l~~ll~~------Ll~~ldgl~~k~~~~VlVIaTTN~p~~-----Ld~aLlrRF~~~ 981 (1119)
|.|||+ | +....-..+. .++.++.. +-..|..+ .++.+.|++|++.+ ..+.++|+- ..
T Consensus 1568 FcDeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-----~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~ 1639 (3164)
T COG5245 1568 FCDEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-----CGIILYGACNPGTDEGRVKYYERFIRKP-VF 1639 (3164)
T ss_pred EeeccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHhhh-----cceEEEccCCCCCCcccCccHHHHhcCc-eE
Confidence 999998 3 3322211111 22222221 11111111 57899999998754 345666653 45
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q 001227 982 LMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 982 I~v~lPd~eeR~eILk~ll~k 1002 (1119)
+.+..|.......|.+.++..
T Consensus 1640 vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1640 VFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EEecCcchhhHHHHHHHHHHH
Confidence 778899998888888887765
No 392
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.00 E-value=0.39 Score=54.73 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
.++..|-|+|+=|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3557899999999999999999987773
No 393
>PRK10436 hypothetical protein; Provisional
Probab=96.00 E-value=0.024 Score=68.48 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=61.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-cc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 888 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~~s-~L 888 (1119)
..++++++-.+...+.+.+++.. +..-+|++||+|+|||++..++..++. .+++.+--+ ++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 34778888888888888776642 323589999999999999888777763 334443321 11
Q ss_pred -----cccccc-chHHHHHHHHHHHHhcCCeEEEEcccc
Q 001227 889 -----TSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 889 -----~s~~~G-~~e~~I~~lF~~A~k~~PsILfIDEID 921 (1119)
....++ ............+.++.|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 100011 111235566777788999999999993
No 394
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.99 E-value=0.017 Score=69.28 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=64.4
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCce-EEEEcCCCChHHHHHHHHHHHhCCcEE---EE
Q 001227 808 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG-ILLFGPPGTGKTMLAKAVATEAGANFI---NI 883 (1119)
Q Consensus 808 p~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~g-ILL~GPpGTGKT~LArAIA~elg~~fi---~V 883 (1119)
+......+|++++......+.+.+++.. | .| +|++||.|+|||+...++..+++.+.. .+
T Consensus 229 ~~~~~~l~l~~Lg~~~~~~~~~~~~~~~---------------p-~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 229 DKDQVILDLEKLGMSPFQLARLLRLLNR---------------P-QGLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred ccccccCCHHHhCCCHHHHHHHHHHHhC---------------C-CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence 3333456788999999999888887652 3 34 899999999999999999988855433 22
Q ss_pred ecC------cccccccc-chHHHHHHHHHHHHhcCCeEEEEcccc
Q 001227 884 SMS------SITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 884 ~~s------~L~s~~~G-~~e~~I~~lF~~A~k~~PsILfIDEID 921 (1119)
.-+ .+..--+. ...-.....+...-++.|.||.|.||-
T Consensus 293 EDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 293 EDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 211 11100000 001123445566678899999999994
No 395
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.98 E-value=0.033 Score=60.23 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEecCc
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 887 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g------~~fi~V~~s~ 887 (1119)
+..-+.|+||||+|||+++..+|... + ..+++++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 33458999999999999999997653 3 5667777654
No 396
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.91 E-value=0.23 Score=57.76 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=50.4
Q ss_pred HHhhhhCCCeEEEeCCCh-hhHHHHHHHHHhh--h---------hhhhhcccchhHHHHHhhhCCCCcccchhhhc---c
Q 001227 663 KQISRLFPNKVTIQLPQD-EALLSDWKQQLER--D---------VETLKGQSNIISIRSVLSRNGLDCVDLESLCI---K 727 (1119)
Q Consensus 663 ~~l~~lf~~~i~i~~P~D-eALLRRfe~q~e~--~---------Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~LA~---~ 727 (1119)
+++..+|.-.|.+.+|.+ +....-..+...+ + ......+.+|...+..+..-.+++..++.++. .
T Consensus 187 ~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~ 266 (334)
T PRK13407 187 PQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIA 266 (334)
T ss_pred HHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHH
Confidence 678889999999999977 3322222221111 1 12233456777777766666666655554433 3
Q ss_pred cCC-CCHHHHHHHHhhhhhhhhhh
Q 001227 728 DQT-LTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 728 tkg-~sgadI~~Lv~~A~s~al~r 750 (1119)
+.. =.-++|. +++.|+.+|+..
T Consensus 267 ~~~~s~Ra~i~-l~~aA~a~A~l~ 289 (334)
T PRK13407 267 LGSDGLRGELT-LLRAARALAAFE 289 (334)
T ss_pred HCCCCchHHHH-HHHHHHHHHHHc
Confidence 321 1235555 888888888864
No 397
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.90 E-value=0.21 Score=55.39 Aligned_cols=133 Identities=11% Similarity=0.054 Sum_probs=90.0
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHHhCCc---------EEEEecCccc---cccccchHHHHHHHHHHHHhc----CCeE
Q 001227 852 CKGILLFGPPG-TGKTMLAKAVATEAGAN---------FINISMSSIT---SKWFGEGEKYVKAVFSLASKI----APSV 914 (1119)
Q Consensus 852 ~~gILL~GPpG-TGKT~LArAIA~elg~~---------fi~V~~s~L~---s~~~G~~e~~I~~lF~~A~k~----~PsI 914 (1119)
....||.|..+ +||..++.-+++.+-+. ++.+....-. +.. -.-..++.+-..+... ...|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~--I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKN--ISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCc--ccHHHHHHHHHHHhhCcccCCcEE
Confidence 35799999998 99999999888776322 2333221100 011 1234566655555432 3469
Q ss_pred EEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHH
Q 001227 915 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREK 994 (1119)
Q Consensus 915 LfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~e 994 (1119)
++|+++|.|- ....+.|+..++. ++.++++|..|..++.+.+.+++|+ ..+.++.|....-.+
T Consensus 93 iII~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 93 AIIYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEEechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHH
Confidence 9999999882 2344566666655 3466788888888999999999999 678899999888777
Q ss_pred HHHHHHhhc
Q 001227 995 IIRVILAKE 1003 (1119)
Q Consensus 995 ILk~ll~k~ 1003 (1119)
+...++...
T Consensus 156 ~~~~~~~p~ 164 (263)
T PRK06581 156 LYSQFIQPI 164 (263)
T ss_pred HHHHhcccc
Confidence 777766543
No 398
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.90 E-value=0.04 Score=61.39 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 885 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~ 885 (1119)
+..-++|.|+||+|||+++..++... +.+++.++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44568999999999999999886653 667777665
No 399
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.89 E-value=0.0074 Score=66.43 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
..|+|.||||+|||++|+.+|+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 46999999999999999999999998777654
No 400
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.89 E-value=0.0064 Score=63.90 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
++|.|.|++|+|||++.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47999999999999999999999999998876
No 401
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.85 E-value=0.072 Score=60.41 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=27.4
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 360 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 360 s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
.+-+||+||+|+ .+.+||+++|+.++.++.+++
T Consensus 30 ~~~~ll~Gp~G~--GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 30 LDHLLLYGPPGL--GKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CCeEEEECCCCC--CHHHHHHHHHHHhCCCEEEec
Confidence 355899999999 799999999999887665543
No 402
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.85 E-value=0.0065 Score=62.42 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
|+|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876653
No 403
>PRK08233 hypothetical protein; Provisional
Probab=95.85 E-value=0.042 Score=57.01 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG-ANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg-~~fi~V~ 884 (1119)
.-|.|.|+||+||||+|+.|+..++ .+++.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3578899999999999999999985 4444444
No 404
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.84 E-value=0.062 Score=58.43 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVA 873 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA 873 (1119)
+.++|+||.|+|||++.+.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 679999999999999999987
No 405
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.83 E-value=0.034 Score=60.46 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=45.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccc-ccc--------------------------cch
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS-KWF--------------------------GEG 896 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~V~~s~L~s-~~~--------------------------G~~ 896 (1119)
.-+.|+||||+|||+++..++... +..+++++...-.. ..+ .+.
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 99 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNSDHQ 99 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCCHHHH
Confidence 458999999999999999997543 25677777644111 000 000
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEcccccccc
Q 001227 897 EKYVKAVFSLASKI-APSVVFVDEVDSMLG 925 (1119)
Q Consensus 897 e~~I~~lF~~A~k~-~PsILfIDEID~L~~ 925 (1119)
...+..+-...... .+.+|+||-+..++.
T Consensus 100 ~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 100 LQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred HHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 11222233333445 789999999998753
No 406
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.81 E-value=0.056 Score=58.16 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=40.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---------------cc----c-chHHHHHHHHHHHH
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---------------WF----G-EGEKYVKAVFSLAS 908 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~---------------~~----G-~~e~~I~~lF~~A~ 908 (1119)
|+-++|.||+|+|||+.+..+|..+ +..+--+++...... ++ . .....+...++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999988888766 444433433221100 00 0 12233444555555
Q ss_pred hcCCeEEEEccccc
Q 001227 909 KIAPSVVFVDEVDS 922 (1119)
Q Consensus 909 k~~PsILfIDEID~ 922 (1119)
...-.+|+||-..+
T Consensus 81 ~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR 94 (196)
T ss_dssp HTTSSEEEEEE-SS
T ss_pred hcCCCEEEEecCCc
Confidence 44457999998753
No 407
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.79 E-value=0.0095 Score=61.72 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
..++|.|++|+|||++++.+|..+|++++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999988654
No 408
>PRK14528 adenylate kinase; Provisional
Probab=95.79 E-value=0.0087 Score=63.51 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+.+++.||||+|||++|+.+++.++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4699999999999999999999999887654
No 409
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.79 E-value=0.029 Score=69.49 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=62.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC---
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS--- 886 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~~s--- 886 (1119)
..++++++-.+...+.+.+++.. +..-||++||+|+|||++..++...++ .+++.+--+
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35688888888888888776642 223489999999999999988877774 334433221
Q ss_pred ---cccccccc-chHHHHHHHHHHHHhcCCeEEEEcccc
Q 001227 887 ---SITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 887 ---~L~s~~~G-~~e~~I~~lF~~A~k~~PsILfIDEID 921 (1119)
.+..-.+. ............+.+..|.||+|.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 11110011 111235566777788999999999994
No 410
>PRK06547 hypothetical protein; Provisional
Probab=95.78 E-value=0.0096 Score=62.68 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
++.-|+|.|++|+|||++|+.+++.++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4467999999999999999999999988877654
No 411
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.78 E-value=0.0077 Score=62.97 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 886 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s 886 (1119)
+-|+|.|+||+|||++|++++..++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4589999999999999999999998877765543
No 412
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.74 E-value=0.063 Score=60.11 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
+..-+|++||||||||+++..+|... |-++++++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 33558999999999999999886543 5566666643
No 413
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.74 E-value=0.011 Score=69.94 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
.++++.||+|||||+++.+++..
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHH
Confidence 58999999999999999999776
No 414
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.72 E-value=0.049 Score=55.65 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.7
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTM-LAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~-LArAIA~el 876 (1119)
..+++.||+|+|||. ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555544
No 415
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.72 E-value=0.029 Score=65.13 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=47.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEe-cCcccc-----------cc--ccchHHHHHHHHHHHHhcCCeEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG--ANFINIS-MSSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVVF 916 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~-~s~L~s-----------~~--~G~~e~~I~~lF~~A~k~~PsILf 916 (1119)
.++|+.|++|+|||+++++++.... ..++.+. ..++.- .. .+...-....++..+.+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 5899999999999999999998874 2333321 111110 00 111222456788888999999999
Q ss_pred Ecccc
Q 001227 917 VDEVD 921 (1119)
Q Consensus 917 IDEID 921 (1119)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99994
No 416
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.70 E-value=0.01 Score=61.97 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+-++|.||||+|||++++.++..+|+.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3689999999999999999999998765543
No 417
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.69 E-value=0.026 Score=57.74 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=41.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc---c----cchHHHHHHHHHHHHhc--CCeEEEEccc
Q 001227 855 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW---F----GEGEKYVKAVFSLASKI--APSVVFVDEV 920 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~---~----G~~e~~I~~lF~~A~k~--~PsILfIDEI 920 (1119)
++|.|+||+|||++|+.++..+ +.+.+.++...+.... . ......++.+...+... ...++++|..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~ 79 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFI 79 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccC
Confidence 6899999999999999999988 6677777654332111 1 11223334444433322 3467777765
No 418
>PRK13946 shikimate kinase; Provisional
Probab=95.68 E-value=0.0093 Score=63.04 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999998766
No 419
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.011 Score=62.77 Aligned_cols=28 Identities=46% Similarity=0.859 Sum_probs=24.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFI 881 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi 881 (1119)
.|+|.||||+||||+|+.||+.++++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999655543
No 420
>PRK02496 adk adenylate kinase; Provisional
Probab=95.67 E-value=0.01 Score=62.37 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.++|.||||+|||++|+.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999999877654
No 421
>PLN02200 adenylate kinase family protein
Probab=95.66 E-value=0.012 Score=64.94 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+.-|+|.|+||+|||++|+.||+.+|++. +++.++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdllR 79 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLLR 79 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHHH
Confidence 345789999999999999999999998764 55555543
No 422
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.072 Score=62.59 Aligned_cols=96 Identities=22% Similarity=0.359 Sum_probs=68.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCccccc--------------cccchHHHHHHHHHHHHhcCCeE
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSV 914 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el--g~~fi~V~~s~L~s~--------------~~G~~e~~I~~lF~~A~k~~PsI 914 (1119)
|..-+||-|.||.|||+|.-.++..+ ..++++++..+-..+ ..--.|..+..+...+...+|.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~l 171 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDL 171 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCE
Confidence 44559999999999999888877665 237999988652211 11224567888999999999999
Q ss_pred EEEccccccccCCC--CCchhHHHHHHHHhhhhh
Q 001227 915 VFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVN 946 (1119)
Q Consensus 915 LfIDEID~L~~~r~--s~~~~~~l~~ll~~Ll~~ 946 (1119)
++||-|..++...- .++.-...+....+|+..
T Consensus 172 vVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 172 VVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred EEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 99999999986542 234444455555555543
No 423
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.65 E-value=0.011 Score=61.96 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~ 885 (1119)
..|+|.|++|+|||++++.+|..++++++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 479999999999999999999999999877763
No 424
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.28 Score=57.76 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=35.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhhcc----cCChhcHHHHHHHcCCCcHHHHHHHHH
Q 001227 981 RLMVNLPDAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNLCV 1031 (1119)
Q Consensus 981 ~I~v~lPd~eeR~eILk~ll~k~~----l~~d~dl~~LA~~TeGysg~DL~~L~~ 1031 (1119)
.|+++..+.+|-..++.++++..- ...+...+++--++ +.+++-++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 477888899999999999887633 23344566666666 557777777764
No 425
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.59 E-value=0.02 Score=65.75 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=31.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 849 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 849 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
..+...|+|+|++|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 445678999999999999999999999999999544
No 426
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.56 E-value=0.011 Score=63.68 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
|+|.||||+|||++|+.||..+|++++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998877654
No 427
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.55 E-value=0.036 Score=58.08 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
+.-.++|+||+||||++|.+++|.-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44569999999999999999999754
No 428
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.52 E-value=0.013 Score=63.50 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.|+++||||+|||++|+.||..++++++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999776654
No 429
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.51 E-value=0.096 Score=55.47 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001227 855 ILLFGPPGTGKTMLAKAVA 873 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA 873 (1119)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999987
No 430
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.50 E-value=0.016 Score=68.77 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=59.4
Q ss_pred cchhhHHHHHHHhhhhhccccccccccC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccCCC-CCCC-
Q 001227 327 YLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP-GGSS- 403 (1119)
Q Consensus 327 ylse~tk~~L~~~~~~hL~~~~~~k~~~-~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~~~-g~~~- 403 (1119)
+--++.|.+|.-|.|.|.+...+.+-.+ ...+ +.|||.||+|+ -..+||||||+.++++++-+|.+.+. .+|.
T Consensus 15 iGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p--~~ILLiGppG~--GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 15 IGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP--KNILMIGPTGV--GKTEIARRLAKLANAPFIKVEATKFTEVGYVG 90 (441)
T ss_pred cCHHHHHHHHHHHHHhhhhhhccccccccccCC--ceEEEECCCCC--CHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence 3358999999999999977765532222 2333 78999999999 79999999999999999999998775 3454
Q ss_pred cccc
Q 001227 404 KEAD 407 (1119)
Q Consensus 404 ~e~~ 407 (1119)
.+.|
T Consensus 91 ~dvE 94 (441)
T TIGR00390 91 RDVE 94 (441)
T ss_pred CCHH
Confidence 3443
No 431
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=95.50 E-value=0.041 Score=58.00 Aligned_cols=78 Identities=28% Similarity=0.394 Sum_probs=65.0
Q ss_pred CceeeecceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEec
Q 001227 13 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFS 92 (1119)
Q Consensus 13 ~~~~~~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~ 92 (1119)
+-.....+.+|+|++..+|++|.|+.+|-.||.|+..+.. ..+|=.|+..-++|||..+.. .+.|.-||.+.|+
T Consensus 82 ~~~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt~vn~~~v~~--~~~l~~gd~i~i~ 155 (191)
T COG1716 82 SVIVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGTYVNGEKVRQ--RVLLQDGDVIRLG 155 (191)
T ss_pred cccccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcceEECCeEccC--cEEcCCCCEEEEC
Confidence 3344555699999999999999999999999999976444 566777776669999999988 7999999999998
Q ss_pred CCCC
Q 001227 93 PSGK 96 (1119)
Q Consensus 93 ~~~~ 96 (1119)
....
T Consensus 156 ~~~~ 159 (191)
T COG1716 156 GTLA 159 (191)
T ss_pred ccce
Confidence 7754
No 432
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.057 Score=58.23 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el 876 (1119)
=|+|+|+||+|||++|+.+|+.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 48999999999999999999998
No 433
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.47 E-value=0.071 Score=62.32 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 849 TKPCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 849 ~~P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..||+|+.|||.-|||||+|.-..-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 5578999999999999999998776443
No 434
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.012 Score=61.02 Aligned_cols=28 Identities=36% Similarity=0.676 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
|-+.||||||||++|+.||..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999875
No 435
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.46 E-value=0.032 Score=59.10 Aligned_cols=68 Identities=31% Similarity=0.507 Sum_probs=44.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecC-cccc---ccc----------cchHHHHHHHHHHHHhcCCeEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KWF----------GEGEKYVKAVFSLASKIAPSVVF 916 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~s-~L~s---~~~----------G~~e~~I~~lF~~A~k~~PsILf 916 (1119)
..++|.||+|+|||+++++++.... ...+.+... ++.. .+. +........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998763 222322211 1100 000 11123456677778888999999
Q ss_pred Eccc
Q 001227 917 VDEV 920 (1119)
Q Consensus 917 IDEI 920 (1119)
+.|+
T Consensus 106 igEi 109 (186)
T cd01130 106 VGEV 109 (186)
T ss_pred EEcc
Confidence 9999
No 436
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.44 E-value=0.029 Score=62.11 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc
Q 001227 855 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 888 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L 888 (1119)
|+|+|+||+|||++|++++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999887 567777765433
No 437
>PRK04328 hypothetical protein; Provisional
Probab=95.43 E-value=0.11 Score=57.69 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
+...+||+||||+|||.|+..++.+. |-+.++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 34569999999999999998876442 555555554
No 438
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.42 E-value=0.05 Score=62.81 Aligned_cols=68 Identities=25% Similarity=0.422 Sum_probs=45.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec-Cccc---cc---cccchHHHHHHHHHHHHhcCCeEEEEccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISM-SSIT---SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEV 920 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~-s~L~---s~---~~G~~e~~I~~lF~~A~k~~PsILfIDEI 920 (1119)
.++++.|++|+|||+++++++... ...++.+.- .++. .. +....+-....++..+.+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 589999999999999999999764 122332221 1111 00 11111224677888889999999999999
No 439
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.41 E-value=0.012 Score=57.02 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001227 855 ILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~el 876 (1119)
|+|.|+||+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 440
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.40 E-value=0.05 Score=62.87 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=45.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cCcccc------ccccchHHHHHHHHHHHHhcCCeEEEEccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 920 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~-~s~L~s------~~~G~~e~~I~~lF~~A~k~~PsILfIDEI 920 (1119)
.++|+.|++|+|||+++++++... +..++.+. ..++.- .+.....-....++..+.+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 579999999999999999998876 22333322 112110 011111224667778888999999999999
No 441
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.40 E-value=0.059 Score=56.65 Aligned_cols=73 Identities=25% Similarity=0.394 Sum_probs=42.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEecCccc-----------ccc-------cc--------
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSIT-----------SKW-------FG-------- 894 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el-------------g~~fi~V~~s~L~-----------s~~-------~G-------- 894 (1119)
-++|+||||+|||+++..++..+ +.+++.++...-. ..+ +-
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48999999999999999887654 2366777764310 000 00
Q ss_pred ----------chHHHHHHHHHHHHh-cCCeEEEEccccccccC
Q 001227 895 ----------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGR 926 (1119)
Q Consensus 895 ----------~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~ 926 (1119)
.....+..+...+.. ..+.+|+||.+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 012234455666666 57899999999999765
No 442
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.40 E-value=0.022 Score=67.96 Aligned_cols=86 Identities=27% Similarity=0.387 Sum_probs=62.3
Q ss_pred ccCCCccccccccccccchhhHHHHHHHhhhhhcccccccccc-CCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 001227 311 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 389 (1119)
Q Consensus 311 i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~-~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~ 389 (1119)
+..+++|.-..|++ .+=-|+.|.+|..|+|-|.+.-...... .+.....+.|||.||+|| -+.+|||+||+.++++
T Consensus 59 ~~~p~~i~~~L~~~-ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~Gt--GKT~lAr~lA~~l~~p 135 (412)
T PRK05342 59 LPTPKEIKAHLDQY-VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGS--GKTLLAQTLARILDVP 135 (412)
T ss_pred CCCHHHHHHHHhhH-eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCC--CHHHHHHHHHHHhCCC
Confidence 44444555444442 1224889999999999888775332111 134445678999999999 7999999999999999
Q ss_pred EEEEeccCCC
Q 001227 390 LLIVDSLLLP 399 (1119)
Q Consensus 390 LL~lDs~~~~ 399 (1119)
+..+|.+.+.
T Consensus 136 f~~id~~~l~ 145 (412)
T PRK05342 136 FAIADATTLT 145 (412)
T ss_pred ceecchhhcc
Confidence 9999987654
No 443
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.39 E-value=0.24 Score=57.30 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
++.-++|.||+|+|||+++..+|..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34568999999999999999998776 455555554
No 444
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.39 E-value=0.16 Score=64.11 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=86.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcE--EEEecCccccc------------c---ccc-------------hHHH
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA--GANF--INISMSSITSK------------W---FGE-------------GEKY 899 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el--g~~f--i~V~~s~L~s~------------~---~G~-------------~e~~ 899 (1119)
.+-+||.-|.|.|||+++...+..+ +..+ +.++-++.... + .+. .+..
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l 116 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESL 116 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHH
Confidence 3569999999999999999997633 4444 44443331100 0 011 1224
Q ss_pred HHHHHHH-HHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-CC-CCcHHHHh
Q 001227 900 VKAVFSL-ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PF-DLDEAVVR 976 (1119)
Q Consensus 900 I~~lF~~-A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~-p~-~Ld~aLlr 976 (1119)
+..+|.+ +....|..||||+.+.+- ++.-++.++.+++ . .+.++.+|.+|.. |. .+..--++
T Consensus 117 ~~~L~~Ela~~~~pl~LVlDDyHli~----~~~l~~~l~fLl~----~-------~P~~l~lvv~SR~rP~l~la~lRlr 181 (894)
T COG2909 117 LSSLLNELASYEGPLYLVLDDYHLIS----DPALHEALRFLLK----H-------APENLTLVVTSRSRPQLGLARLRLR 181 (894)
T ss_pred HHHHHHHHHhhcCceEEEeccccccC----cccHHHHHHHHHH----h-------CCCCeEEEEEeccCCCCcccceeeh
Confidence 4555554 455678999999999772 2233444433333 2 2366777777743 32 22211111
Q ss_pred ccccccccC----CCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 001227 977 RLPRRLMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 977 RF~~~I~v~----lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg 1023 (1119)
+..+++. ..+.+|-.++++...... .+..+++.|-..++|+..
T Consensus 182 --~~llEi~~~~Lrf~~eE~~~fl~~~~~l~--Ld~~~~~~L~~~teGW~~ 228 (894)
T COG2909 182 --DELLEIGSEELRFDTEEAAAFLNDRGSLP--LDAADLKALYDRTEGWAA 228 (894)
T ss_pred --hhHHhcChHhhcCChHHHHHHHHHcCCCC--CChHHHHHHHhhcccHHH
Confidence 1112222 236777778877664221 245678888899998855
No 445
>PF13479 AAA_24: AAA domain
Probab=95.38 E-value=0.054 Score=58.73 Aligned_cols=20 Identities=55% Similarity=1.052 Sum_probs=18.6
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAV 872 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAI 872 (1119)
..+||||+||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 57999999999999999888
No 446
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.11 Score=61.45 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=43.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----c---c---------ccchHHHHHHHHHHHHh-cC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----K---W---------FGEGEKYVKAVFSLASK-IA 911 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s----~---~---------~G~~e~~I~~lF~~A~k-~~ 911 (1119)
++.|+|.||+|+|||+++..||..+ +..+..+++..... . + .......+......+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3679999999999999999998776 45555555432210 0 0 01223334444444433 23
Q ss_pred CeEEEEcccccc
Q 001227 912 PSVVFVDEVDSM 923 (1119)
Q Consensus 912 PsILfIDEID~L 923 (1119)
-.+||||-..+.
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 478888877543
No 447
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.37 E-value=0.1 Score=55.84 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVA 873 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA 873 (1119)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 569999999999999999998
No 448
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.37 E-value=0.13 Score=55.92 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 887 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~ 887 (1119)
+..-++|.|+||+|||.++..++.+. +-++++++..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34569999999999999999887543 66777777643
No 449
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.29 E-value=0.4 Score=54.25 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
+++-++|.||+|+|||+++..+|..+ |..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44678899999999999999998766 5566666554
No 450
>PRK14527 adenylate kinase; Provisional
Probab=95.28 E-value=0.015 Score=61.61 Aligned_cols=32 Identities=34% Similarity=0.616 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+.-++++||||+|||++|+.+|..+++..+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 35699999999999999999999998765543
No 451
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.28 E-value=0.066 Score=55.61 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001227 855 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 887 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~ 887 (1119)
+++.||||+|||+++..+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998765 66777777653
No 452
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.26 E-value=0.11 Score=55.55 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVA 873 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA 873 (1119)
+.++|+||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 459999999999999999987
No 453
>PRK04040 adenylate kinase; Provisional
Probab=95.26 E-value=0.019 Score=61.29 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=26.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA--GANFI 881 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el--g~~fi 881 (1119)
+.-|+|+|+||+|||++++.++..+ +++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3569999999999999999999999 56554
No 454
>PRK06696 uridine kinase; Validated
Probab=95.21 E-value=0.044 Score=59.75 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=31.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 889 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~ 889 (1119)
+.-|.|.|++|+|||+||+.|+..+ |.+++.+++.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3569999999999999999999998 6778877766543
No 455
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.19 E-value=0.045 Score=61.92 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=46.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCc----------cccccccchHHHHHHHHHHHHhcCCeEEEEccc
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS----------ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEV 920 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg----~~fi~V~~s~----------L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEI 920 (1119)
||++||.|+|||+...++-.+.+ .+++.+.-+- +...-+|............|-+..|.||++-|+
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEm 207 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGEM 207 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEecc
Confidence 89999999999998888887774 3334433211 111223444445566677778888999999999
Q ss_pred cc
Q 001227 921 DS 922 (1119)
Q Consensus 921 D~ 922 (1119)
-.
T Consensus 208 RD 209 (353)
T COG2805 208 RD 209 (353)
T ss_pred cc
Confidence 43
No 456
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.17 E-value=0.055 Score=57.87 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCccccc
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSK 891 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el-g~~fi~V~~s~L~s~ 891 (1119)
.|.-+++.|+||+|||+++..+...+ +-.++.++..++...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 34679999999999999999999988 778889987776544
No 457
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.15 E-value=0.03 Score=64.24 Aligned_cols=70 Identities=23% Similarity=0.397 Sum_probs=45.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEec-Ccccc---cc----c-----cchHHHHHHHHHHHHhcCCeEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISM-SSITS---KW----F-----GEGEKYVKAVFSLASKIAPSVVF 916 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~-s~L~s---~~----~-----G~~e~~I~~lF~~A~k~~PsILf 916 (1119)
..+++|.||+|+|||+++++++..+. ...+.+.- .++.- .. . +...-....++..+.+..|.+|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 36899999999999999999987763 22222221 11100 00 0 11122456677788889999999
Q ss_pred Ecccc
Q 001227 917 VDEVD 921 (1119)
Q Consensus 917 IDEID 921 (1119)
+||+-
T Consensus 224 ~gE~r 228 (308)
T TIGR02788 224 LGELR 228 (308)
T ss_pred EeccC
Confidence 99994
No 458
>PRK04182 cytidylate kinase; Provisional
Probab=95.14 E-value=0.019 Score=59.36 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
.|+|.|++|+|||++|+.+|+.++++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999998765
No 459
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.13 E-value=0.018 Score=58.56 Aligned_cols=32 Identities=38% Similarity=0.658 Sum_probs=25.5
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 857 LFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 857 L~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
|.||||+|||++|+.||.++++. .++..++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHH
Confidence 68999999999999999999865 445445443
No 460
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.13 E-value=0.077 Score=55.02 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=42.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCccc--------ccccc-----chHHHHHHHHHHHHhcCCeEE
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSIT--------SKWFG-----EGEKYVKAVFSLASKIAPSVV 915 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~--~fi~V~~s~L~--------s~~~G-----~~e~~I~~lF~~A~k~~PsIL 915 (1119)
+...+.|.||+|+|||+|.+.|+..... --+.++...+. ....+ ...+.-+-.+..|--..|.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 4456899999999999999999866421 11222221111 00011 011223334556666789999
Q ss_pred EEcccc
Q 001227 916 FVDEVD 921 (1119)
Q Consensus 916 fIDEID 921 (1119)
++||--
T Consensus 105 llDEP~ 110 (163)
T cd03216 105 ILDEPT 110 (163)
T ss_pred EEECCC
Confidence 999985
No 461
>PLN02674 adenylate kinase
Probab=95.11 E-value=0.021 Score=63.50 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+...|+|.||||+||+++|+.||+.++++++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 346799999999999999999999998765543
No 462
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.10 E-value=0.015 Score=60.95 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
.|+|+|.||+|||++++.++ ++|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 58999999999999999999 9999888775
No 463
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.07 E-value=0.028 Score=65.47 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=46.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-Ccccc----------c--cccchHHHHHHHHHHHHhcCCeEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSITS----------K--WFGEGEKYVKAVFSLASKIAPSVVF 916 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~--~fi~V~~-s~L~s----------~--~~G~~e~~I~~lF~~A~k~~PsILf 916 (1119)
..++|+.||+|+|||+++++++..... .++.+.- .++.- . ..+...-....++..+.+..|..|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 358999999999999999999987632 2332221 11100 0 0011122456788888899999999
Q ss_pred Eccc
Q 001227 917 VDEV 920 (1119)
Q Consensus 917 IDEI 920 (1119)
+.|+
T Consensus 242 vGEi 245 (344)
T PRK13851 242 LGEM 245 (344)
T ss_pred EEee
Confidence 9999
No 464
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.07 E-value=0.029 Score=65.44 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el 876 (1119)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 465
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.07 E-value=0.064 Score=63.44 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
..++|.||+|+|||+|++.|++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4699999999999999999998763
No 466
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.04 E-value=0.057 Score=65.11 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=36.8
Q ss_pred cccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcC
Q 001227 317 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 387 (1119)
Q Consensus 317 ~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~ 387 (1119)
-..|||+|- ..+..+.++..|-.+ + .+-....+.++|+||+|+ ....|++|+|++..
T Consensus 117 ~~~tfd~fv--~g~~n~~a~~~~~~~-------~---~~~~~~~~~l~l~G~~G~--GKThL~~ai~~~~~ 173 (450)
T PRK00149 117 PKYTFDNFV--VGKSNRLAHAAALAV-------A---ENPGKAYNPLFIYGGVGL--GKTHLLHAIGNYIL 173 (450)
T ss_pred CCCcccccc--cCCCcHHHHHHHHHH-------H---hCcCccCCeEEEECCCCC--CHHHHHHHHHHHHH
Confidence 345899984 345555544443332 1 111123355999999999 79999999998863
No 467
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.03 E-value=0.089 Score=67.10 Aligned_cols=98 Identities=21% Similarity=0.277 Sum_probs=53.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEecCc----cccccccchHHHHHHHHHHH----------HhcCCeE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS----ITSKWFGEGEKYVKAVFSLA----------SKIAPSV 914 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el---g--~~fi~V~~s~----L~s~~~G~~e~~I~~lF~~A----------~k~~PsI 914 (1119)
-++|.|+||||||++++++...+ + .+++-+.... -+....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999986654 4 4444443321 11111222223333433221 0123579
Q ss_pred EEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 915 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 915 LfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
|+|||+..+- ..++..++..+ . ...+++++|=.+..-
T Consensus 420 lIvDEaSMvd------------~~~~~~Ll~~~---~--~~~rlilvGD~~QLp 456 (720)
T TIGR01448 420 LIVDESSMMD------------TWLALSLLAAL---P--DHARLLLVGDTDQLP 456 (720)
T ss_pred EEEeccccCC------------HHHHHHHHHhC---C--CCCEEEEECcccccc
Confidence 9999997661 12333333322 2 235688877665543
No 468
>PTZ00202 tuzin; Provisional
Probab=95.03 E-value=0.45 Score=57.02 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=46.3
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001227 816 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 886 (1119)
Q Consensus 816 fddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s 886 (1119)
..+..|.+....+|.+.+.. .... .++-+.|+||+|+|||+|++.++..++.+.+.+|..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~----------~d~~-~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR----------LDTA-HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc----------cCCC-CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34789999999999887752 1111 234689999999999999999999998777777654
No 469
>PRK01184 hypothetical protein; Provisional
Probab=95.01 E-value=0.021 Score=59.96 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
-|+|+|+||+||||+++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58999999999999987 788999887655
No 470
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.00 E-value=0.022 Score=58.51 Aligned_cols=29 Identities=41% Similarity=0.702 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
|.|+|++|+|||++|+.+++.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887653
No 471
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.27 Score=58.69 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 886 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s 886 (1119)
.-++|.||+|+|||+++..+|... |..+..+++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 458999999999999999998654 4455555543
No 472
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.95 E-value=0.025 Score=66.59 Aligned_cols=112 Identities=21% Similarity=0.348 Sum_probs=66.0
Q ss_pred hhcccCCCCHHHHHHHHhhhhhhhhhhcCC--CCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhhhcchhHHHHh
Q 001227 724 LCIKDQTLTTEGVEKIVGWALSHHFMHCSE--APGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKK 801 (1119)
Q Consensus 724 LA~~tkg~sgadI~~Lv~~A~s~al~r~~~--~i~~~~kl~id~~si~~~~~df~~a~~eik~~~~slk~iv~~~e~~k~ 801 (1119)
+...++-++-++++.+.++-...|-+.... .+.+.....+.-+.+++.. ...|+...+. +
T Consensus 174 v~l~d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvI--------arPPfSd~~E--I-------- 235 (604)
T COG1855 174 VRLSDKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVI--------ARPPFSDRWE--I-------- 235 (604)
T ss_pred EEcCCccCCHHHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEE--------ecCCCCCceE--E--------
Confidence 444466778888888888777766653211 1112233333333333322 1112221111 0
Q ss_pred hhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 802 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 802 ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..+-| -...+++|..-.+++++.|.+. ..|||+.||||.|||++|+|+|..+
T Consensus 236 --TavRP--vvk~~ledY~L~dkl~eRL~er-------------------aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 236 --TAVRP--VVKLSLEDYGLSDKLKERLEER-------------------AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred --EEEee--eEEechhhcCCCHHHHHHHHhh-------------------hcceEEecCCCCChhHHHHHHHHHH
Confidence 00001 0145778888888998888772 2589999999999999999999876
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.92 E-value=0.12 Score=62.94 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=52.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc----------------------chHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG----------------------EGEKY 899 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~------~~G----------------------~~e~~ 899 (1119)
+...+||.||||+|||+|+..++.+. |-+.+++...+-... .+| ..+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 34569999999999999999887655 556777665431110 000 12556
Q ss_pred HHHHHHHHHhcCCeEEEEccccccc
Q 001227 900 VKAVFSLASKIAPSVVFVDEVDSML 924 (1119)
Q Consensus 900 I~~lF~~A~k~~PsILfIDEID~L~ 924 (1119)
+..+.+......|.+|+||-+..+.
T Consensus 342 ~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 342 LQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 7777788888889999999998774
No 474
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.89 E-value=0.13 Score=58.79 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 887 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~V~~s~ 887 (1119)
.-++|+||||+|||+++..+|... +..+++++...
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 457999999999999999998663 23778888655
No 475
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.89 E-value=0.12 Score=59.62 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 887 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~V~~s~ 887 (1119)
.-++|+||||+|||.++..+|... +..+++++...
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 458999999999999999998653 33677777654
No 476
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.88 E-value=0.024 Score=58.35 Aligned_cols=26 Identities=42% Similarity=0.671 Sum_probs=21.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFI 881 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi 881 (1119)
|.|+|++|||||+|+++|+.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999988 88876
No 477
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.84 E-value=0.14 Score=65.23 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=47.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecCcccc----------------ccccchHHHHHHHHHHHHhcCC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAP 912 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~e---lg~~fi~V~~s~L~s----------------~~~G~~e~~I~~lF~~A~k~~P 912 (1119)
..-++|+||+|+|||+|+..++.. .|-.+++++...-.. ......+..+..+-...+...+
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~ 139 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGAL 139 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 355899999999999999765433 366777777644111 0011223333333333445578
Q ss_pred eEEEEcccccccc
Q 001227 913 SVVFVDEVDSMLG 925 (1119)
Q Consensus 913 sILfIDEID~L~~ 925 (1119)
.+|+||-|..|++
T Consensus 140 ~LVVIDSI~aL~~ 152 (790)
T PRK09519 140 DIVVIDSVAALVP 152 (790)
T ss_pred eEEEEcchhhhcc
Confidence 9999999999985
No 478
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.84 E-value=0.21 Score=54.36 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
+...++|.||||+|||+|+..++.+. +-+.+.++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 44669999999999999999876432 555666654
No 479
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.84 E-value=0.052 Score=56.43 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=31.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 890 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s 890 (1119)
.-|+|+|.||+|||+||+++.+.+ +.+++.++...+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 358999999999999999998877 78889898765543
No 480
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.80 E-value=0.083 Score=59.67 Aligned_cols=70 Identities=26% Similarity=0.335 Sum_probs=37.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--c-cc-ccchHHHHHHHHHHHHh---cCCeEEEEcccccc
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--S-KW-FGEGEKYVKAVFSLASK---IAPSVVFVDEVDSM 923 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~--s-~~-~G~~e~~I~~lF~~A~k---~~PsILfIDEID~L 923 (1119)
=|+|+|-||+|||++|+.|+..+ +..++.++-..+. . .| -...|+.++..+..+-. ....||++|+...+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 38999999999999999998875 5677777643332 1 11 12335555544333211 23479999998765
No 481
>PF13245 AAA_19: Part of AAA domain
Probab=94.78 E-value=0.046 Score=49.98 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=16.9
Q ss_pred eEEEEcCCCChHHH-HHHHHHHHh
Q 001227 854 GILLFGPPGTGKTM-LAKAVATEA 876 (1119)
Q Consensus 854 gILL~GPpGTGKT~-LArAIA~el 876 (1119)
-+++.||||||||+ +++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 46669999999995 555555554
No 482
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.76 E-value=0.047 Score=65.04 Aligned_cols=84 Identities=30% Similarity=0.426 Sum_probs=60.3
Q ss_pred cCCCccccccccccccchhhHHHHHHHhhhhhccccccc--ccc-CCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCC
Q 001227 312 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA--KYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 388 (1119)
Q Consensus 312 ~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~--k~~-~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a 388 (1119)
..+++|.-.++++ .+--|+.|.+|.-|.|-|.+.-... +.. .+..-....|||.||+|| -..+|||+||+.+++
T Consensus 66 ~~p~~i~~~L~~~-ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~Gs--GKT~lAraLA~~l~~ 142 (413)
T TIGR00382 66 PTPKEIKAHLDEY-VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGS--GKTLLAQTLARILNV 142 (413)
T ss_pred CCHHHHHHHhcce-ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCc--CHHHHHHHHHHhcCC
Confidence 3444444444443 2335899999999999998874331 110 122334578999999999 799999999999999
Q ss_pred eEEEEeccCC
Q 001227 389 RLLIVDSLLL 398 (1119)
Q Consensus 389 ~LL~lDs~~~ 398 (1119)
++.++|.+.+
T Consensus 143 pf~~~da~~L 152 (413)
T TIGR00382 143 PFAIADATTL 152 (413)
T ss_pred CeEEechhhc
Confidence 9999997765
No 483
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.76 E-value=4.8 Score=48.23 Aligned_cols=204 Identities=23% Similarity=0.255 Sum_probs=114.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc---------------cccccc-----hHHHHHHHHHH
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT---------------SKWFGE-----GEKYVKAVFSL 906 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~---------------s~~~G~-----~e~~I~~lF~~ 906 (1119)
+||.-||+.|=-|+||||.+..+|..+ +..+..+.|.... -.+++. .....+...+.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 466779999999999999999999887 5666555553311 112222 23466788888
Q ss_pred HHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC--cHHHHhcccc-ccc
Q 001227 907 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL--DEAVVRRLPR-RLM 983 (1119)
Q Consensus 907 A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L--d~aLlrRF~~-~I~ 983 (1119)
|+...-.||++|=..++- .-..+++++...-+-+.+ .+-++|+=++.-.+.. ..+|-.+.+. -+.
T Consensus 178 ak~~~~DvvIvDTAGRl~----------ide~Lm~El~~Ik~~~~P--~E~llVvDam~GQdA~~~A~aF~e~l~itGvI 245 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLH----------IDEELMDELKEIKEVINP--DETLLVVDAMIGQDAVNTAKAFNEALGITGVI 245 (451)
T ss_pred HHHcCCCEEEEeCCCccc----------ccHHHHHHHHHHHhhcCC--CeEEEEEecccchHHHHHHHHHhhhcCCceEE
Confidence 888888999999997762 112344444433333332 2445555444332222 2333333321 133
Q ss_pred cCCCCHHHHHHH---HHHHHhh--------ccc--CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH-
Q 001227 984 VNLPDAPNREKI---IRVILAK--------EEL--ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER- 1049 (1119)
Q Consensus 984 v~lPd~eeR~eI---Lk~ll~k--------~~l--~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~- 1049 (1119)
+.-.|-+.|--- ++..... +.+ .+.++.+.+|.+.=|. +|+..|++.|...--.+ +.+.
T Consensus 246 lTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGM--GDv~sLvEk~~~~~d~e-----~a~~~ 318 (451)
T COG0541 246 LTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGM--GDVLSLIEKAEEVVDEE-----EAEKL 318 (451)
T ss_pred EEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCc--ccHHHHHHHHHHhhhHH-----HHHHH
Confidence 444554444221 1112111 111 2455678888887553 59999998876543221 1111
Q ss_pred HHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcc
Q 001227 1050 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1085 (1119)
Q Consensus 1050 ~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~p 1085 (1119)
..... .-..+.+||.+-+++++.
T Consensus 319 ~~kl~-------------~g~FtL~Df~~Ql~~m~k 341 (451)
T COG0541 319 AEKLK-------------KGKFTLEDFLEQLEQMKK 341 (451)
T ss_pred HHHHH-------------hCCCCHHHHHHHHHHHHc
Confidence 00111 124889999998887753
No 484
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.73 E-value=0.027 Score=63.67 Aligned_cols=30 Identities=40% Similarity=0.534 Sum_probs=25.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-GANFIN 882 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-g~~fi~ 882 (1119)
.-|+|.|+||||||++|+.+++.+ ++.++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 358899999999999999999998 555444
No 485
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.12 Score=52.84 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=42.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCcccc-------c---c---ccchHHHHHHHHHHHHhcCCeEE
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITS-------K---W---FGEGEKYVKAVFSLASKIAPSVV 915 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~--fi~V~~s~L~s-------~---~---~G~~e~~I~~lF~~A~k~~PsIL 915 (1119)
+...+.|.||+|+|||+|+++|+..+... -+.++...+.. . + +..++ .-+-.+..+--..|.++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALLLNPDLL 102 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHhcCCCEE
Confidence 34568999999999999999998765321 12333221110 0 0 11122 22223444445578999
Q ss_pred EEccccc
Q 001227 916 FVDEVDS 922 (1119)
Q Consensus 916 fIDEID~ 922 (1119)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999963
No 486
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.70 E-value=0.058 Score=68.45 Aligned_cols=79 Identities=28% Similarity=0.472 Sum_probs=66.6
Q ss_pred cceeeeec---ccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEecCCC
Q 001227 19 GAVFTVGH---NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG 95 (1119)
Q Consensus 19 ~~~~tvg~---~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~~~~ 95 (1119)
.-.-+||+ +..-|+.|..+.|---||-+++. ||+.|.+|+-.+.- ..+||||.+.- -.+|+.||.||+| |
T Consensus 476 eG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~--~g~~~vtl~p~e~a-etyVNGk~v~e--p~qL~~GdRiilG--~ 548 (1221)
T KOG0245|consen 476 EGETRVGREDASSRQDIVLSGQLIREQHCSIRNE--GGNDVVTLEPCEDA-ETYVNGKLVTE--PTQLRSGDRIILG--G 548 (1221)
T ss_pred cCceecCCCCcccCCceEecchhhhhhceEEEec--CCCceEEeccCCcc-ceeEccEEcCC--cceeccCCEEEEc--C
Confidence 34457884 46789999999999999999977 77778888888776 89999999987 5789999999996 4
Q ss_pred Ccceeeecc
Q 001227 96 KHSYIFQQL 104 (1119)
Q Consensus 96 ~~~yi~~~~ 104 (1119)
+|-|-|-++
T Consensus 549 ~H~frfn~P 557 (1221)
T KOG0245|consen 549 NHVFRFNHP 557 (1221)
T ss_pred ceeEEecCH
Confidence 799988766
No 487
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.70 E-value=0.035 Score=49.43 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001227 855 ILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~el 876 (1119)
+.|.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 488
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.69 E-value=0.085 Score=61.88 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=42.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecC-ccccc------------cccchHHHHHHHHHHHHhcCCe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS-SITSK------------WFGEGEKYVKAVFSLASKIAPS 913 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg------~~fi~V~~s-~L~s~------------~~G~~e~~I~~lF~~A~k~~Ps 913 (1119)
..++++||+|+|||+++++++..+. ..++.+.-+ ++.-. ..+............+.+..|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4599999999999999999988762 233332211 11000 0011111234455567788999
Q ss_pred EEEEcccc
Q 001227 914 VVFVDEVD 921 (1119)
Q Consensus 914 ILfIDEID 921 (1119)
+|++.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999984
No 489
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=94.67 E-value=0.057 Score=58.23 Aligned_cols=105 Identities=22% Similarity=0.322 Sum_probs=57.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 932 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 932 (1119)
.-++|.|+.|+|||++.+.|+.+. +.-+ +.. ... ..... ..... -|+.|||++.+. ...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~---~~~--~~~-kd~~~---~l~~~---~iveldEl~~~~-----k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDS---IND--FDD-KDFLE---QLQGK---WIVELDELDGLS-----KKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCc---ccc--CCC-cHHHH---HHHHh---HheeHHHHhhcc-----hhh
Confidence 458999999999999999997652 1101 100 011 11111 11111 588899999873 222
Q ss_pred hHHHHHHHHhhhhhccCC----cccCCccEEEEEecCCCCCCc-HHHHhcc
Q 001227 933 HEAMRKMKNEFMVNWDGL----RTKDKERVLVLAATNRPFDLD-EAVVRRL 978 (1119)
Q Consensus 933 ~~~l~~ll~~Ll~~ldgl----~~k~~~~VlVIaTTN~p~~Ld-~aLlrRF 978 (1119)
.+.+..++..-...++.. ...-+....+|||||..+-|. +.--|||
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf 162 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF 162 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE
Confidence 334444433322222211 111246678899999877554 3455677
No 490
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.66 E-value=0.025 Score=60.25 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001227 855 ILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~el 876 (1119)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777766555
No 491
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.64 E-value=0.18 Score=55.48 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 001227 855 ILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~e 875 (1119)
-+|.||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999988764
No 492
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.63 E-value=0.082 Score=59.19 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=59.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccc-c-------ccc-c------------------hHH
Q 001227 855 ILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS-K-------WFG-E------------------GEK 898 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~el---------g~~fi~V~~s~L~s-~-------~~G-~------------------~e~ 898 (1119)
.=|+||||+|||.|+..+|-.. +..+++++...-+. . .++ . -..
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 5699999999999999887654 34588888644110 0 000 0 011
Q ss_pred HHHHHHHHHHhcCCeEEEEccccccccCCCCC-chhHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 001227 899 YVKAVFSLASKIAPSVVFVDEVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 964 (1119)
Q Consensus 899 ~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~-~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTT 964 (1119)
.+..+-......+-.+|+||-|-.++...... +....-...+..++..+..+..+ .++.||.|.
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~--~~iaVvvTN 185 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARK--YNIAVVVTN 185 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHH--TT-EEEEEE
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHh--CCceEEeec
Confidence 22222233334456899999999998543221 11122234445555555544333 456666554
No 493
>PRK14526 adenylate kinase; Provisional
Probab=94.61 E-value=0.034 Score=60.48 Aligned_cols=29 Identities=34% Similarity=0.696 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
.++|.||||+|||++++.+|..++++++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48999999999999999999999876654
No 494
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.59 E-value=0.036 Score=60.15 Aligned_cols=38 Identities=39% Similarity=0.547 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
-++|.||+|||||.+|-++|+..|.|++..+.-....+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 37999999999999999999999999999987554433
No 495
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.59 E-value=0.12 Score=53.89 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=28.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 887 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~ 887 (1119)
..-+.|.|+||+|||++|++++..+ +..+..++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 3468999999999999999999887 44566666544
No 496
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.57 E-value=0.081 Score=57.39 Aligned_cols=23 Identities=52% Similarity=0.696 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el 876 (1119)
-+.+.||.|||||+||-+.|.++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998665
No 497
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.50 E-value=0.18 Score=57.21 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEecCc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 887 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el----g-~~fi~V~~s~ 887 (1119)
+..++|.||+|+|||+++..+|..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3569999999999999999998765 3 5666666544
No 498
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.49 E-value=1.1 Score=53.42 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=24.4
Q ss_pred ceEEEEcCCCChHHHHH--HHHHHHhCCcEEEEecCcc
Q 001227 853 KGILLFGPPGTGKTMLA--KAVATEAGANFINISMSSI 888 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LA--rAIA~elg~~fi~V~~s~L 888 (1119)
.=|+++||.|+||+.|+ +++.. ..+++.++|..+
T Consensus 18 TFIvV~GPrGSGK~elV~d~~L~~--r~~vL~IDC~~i 53 (431)
T PF10443_consen 18 TFIVVQGPRGSGKRELVMDHVLKD--RKNVLVIDCDQI 53 (431)
T ss_pred eEEEEECCCCCCccHHHHHHHHhC--CCCEEEEEChHh
Confidence 34899999999999999 44443 233777777543
No 499
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.47 E-value=0.062 Score=62.21 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~ 885 (1119)
..|.|.|++|+|||+|++.++..++.+++.--.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~ 195 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYA 195 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehh
Confidence 479999999999999999999999988865443
No 500
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=94.44 E-value=0.17 Score=57.86 Aligned_cols=85 Identities=22% Similarity=0.257 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHH
Q 001227 822 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVK 901 (1119)
Q Consensus 822 ~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~ 901 (1119)
..+..+.+.+++-..+... .....-++|+|+.|+|||+++..|..-+|-..+....+..... ++..
T Consensus 54 d~~~~~~l~~~lg~~L~~~--------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~-~~~~----- 119 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN--------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNE-FQEH----- 119 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC--------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhh-ccCC-----
Confidence 3456666777665433321 1223569999999999999999998888765433332222222 1110
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q 001227 902 AVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 902 ~lF~~A~k~~PsILfIDEID 921 (1119)
-|..|.-...-+++.||++
T Consensus 120 -~f~~a~l~gk~l~~~~E~~ 138 (304)
T TIGR01613 120 -RFGLARLEGKRAVIGDEVQ 138 (304)
T ss_pred -CchhhhhcCCEEEEecCCC
Confidence 2444444445788999986
Done!