Query 001227
Match_columns 1119
No_of_seqs 646 out of 3744
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.1E-64 3.9E-69 627.1 12.1 546 317-1105 199-763 (806)
2 4b4t_J 26S protease regulatory 100.0 9.7E-42 3.3E-46 393.0 26.1 247 812-1087 143-393 (405)
3 1ypw_A Transitional endoplasmi 100.0 7.4E-44 2.5E-48 446.1 4.2 544 318-1105 200-763 (806)
4 4b4t_H 26S protease regulatory 100.0 1.7E-40 5.7E-45 387.1 26.1 261 811-1101 203-467 (467)
5 4b4t_I 26S protease regulatory 100.0 6.8E-41 2.3E-45 387.2 22.4 251 811-1090 176-430 (437)
6 4b4t_M 26S protease regulatory 100.0 2E-40 6.8E-45 386.7 24.0 251 811-1090 175-429 (434)
7 4b4t_L 26S protease subunit RP 100.0 3.8E-40 1.3E-44 384.7 23.5 250 811-1089 175-428 (437)
8 4b4t_K 26S protease regulatory 100.0 9.6E-39 3.3E-43 372.2 25.5 247 811-1086 166-418 (428)
9 3cf2_A TER ATPase, transitiona 100.0 3.5E-39 1.2E-43 399.7 12.1 287 812-1111 199-487 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.7E-35 9.2E-40 332.2 28.9 291 812-1108 7-322 (322)
11 3eie_A Vacuolar protein sortin 100.0 9.4E-35 3.2E-39 327.0 24.4 292 812-1109 13-322 (322)
12 2qp9_X Vacuolar protein sortin 100.0 3.4E-34 1.2E-38 327.3 23.8 294 810-1109 44-355 (355)
13 2zan_A Vacuolar protein sortin 100.0 2.6E-33 8.9E-38 329.2 22.4 294 809-1108 126-444 (444)
14 3cf0_A Transitional endoplasmi 100.0 1.2E-33 4.1E-38 315.3 17.7 287 812-1104 10-300 (301)
15 3hu3_A Transitional endoplasmi 100.0 2.8E-33 9.4E-38 332.5 19.2 280 813-1107 200-483 (489)
16 3d8b_A Fidgetin-like protein 1 100.0 4.3E-32 1.5E-36 310.0 25.2 276 813-1107 80-356 (357)
17 2x8a_A Nuclear valosin-contain 100.0 3.7E-32 1.3E-36 300.3 20.6 259 813-1090 6-271 (274)
18 3b9p_A CG5977-PA, isoform A; A 100.0 2.7E-31 9.2E-36 293.5 20.9 279 811-1108 15-295 (297)
19 3vfd_A Spastin; ATPase, microt 100.0 2.3E-30 7.9E-35 298.5 24.2 277 812-1107 110-387 (389)
20 3h4m_A Proteasome-activating n 100.0 6.9E-30 2.4E-34 280.2 24.7 267 813-1108 13-283 (285)
21 2ce7_A Cell division protein F 100.0 3.9E-29 1.3E-33 295.5 25.7 265 811-1105 10-282 (476)
22 1lv7_A FTSH; alpha/beta domain 100.0 9.7E-29 3.3E-33 268.0 23.8 245 811-1085 6-254 (257)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.3E-28 4.3E-33 266.0 18.0 247 813-1089 2-255 (262)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 1.3E-27 4.4E-32 284.1 20.1 264 812-1105 26-297 (499)
25 2r62_A Cell division protease 99.9 8.4E-29 2.9E-33 269.6 1.7 252 810-1090 4-260 (268)
26 1ixz_A ATP-dependent metallopr 99.9 3.6E-26 1.2E-30 247.5 21.6 241 810-1080 9-253 (254)
27 1ypw_A Transitional endoplasmi 99.9 1.9E-26 6.6E-31 288.8 13.1 286 813-1111 200-487 (806)
28 1iy2_A ATP-dependent metallopr 99.9 9.8E-25 3.4E-29 239.9 24.7 239 812-1080 35-277 (278)
29 4b4t_J 26S protease regulatory 99.9 2.1E-23 7.3E-28 240.7 13.1 233 316-783 142-390 (405)
30 4b4t_I 26S protease regulatory 99.9 3.1E-23 1.1E-27 240.1 11.4 234 315-783 175-424 (437)
31 4b4t_M 26S protease regulatory 99.9 9E-23 3.1E-27 238.2 10.3 236 314-784 173-424 (434)
32 3pxi_A Negative regulator of g 99.9 4.3E-21 1.5E-25 239.2 23.9 210 817-1040 491-727 (758)
33 4b4t_L 26S protease subunit RP 99.9 2.3E-22 8E-27 234.9 11.5 235 315-784 174-424 (437)
34 4b4t_H 26S protease regulatory 99.9 6.9E-22 2.3E-26 230.8 14.1 234 315-783 202-451 (467)
35 1r6b_X CLPA protein; AAA+, N-t 99.9 3.6E-21 1.2E-25 239.7 21.1 203 818-1040 459-718 (758)
36 3t15_A Ribulose bisphosphate c 99.8 3.5E-21 1.2E-25 214.3 15.1 175 849-1029 33-223 (293)
37 4b4t_K 26S protease regulatory 99.8 2.2E-21 7.6E-26 226.3 12.5 216 315-750 165-397 (428)
38 1qvr_A CLPB protein; coiled co 99.8 3.1E-19 1.1E-23 225.3 22.9 209 817-1042 558-824 (854)
39 3syl_A Protein CBBX; photosynt 99.8 1.5E-18 5.2E-23 192.0 18.6 215 818-1043 32-268 (309)
40 2c9o_A RUVB-like 1; hexameric 99.8 1.2E-20 4E-25 222.3 -1.5 202 812-1032 32-262 (456)
41 1ofh_A ATP-dependent HSL prote 99.7 7.8E-18 2.7E-22 185.4 14.6 247 818-1084 16-300 (310)
42 3uk6_A RUVB-like 2; hexameric 99.7 4.7E-17 1.6E-21 184.5 20.8 219 813-1083 40-330 (368)
43 3pfi_A Holliday junction ATP-d 99.7 2.4E-16 8.3E-21 177.0 22.7 200 814-1037 26-234 (338)
44 1d2n_A N-ethylmaleimide-sensit 99.7 3E-17 1E-21 179.3 14.3 181 850-1037 62-249 (272)
45 1xwi_A SKD1 protein; VPS4B, AA 99.7 6.7E-17 2.3E-21 182.2 15.6 218 315-751 5-234 (322)
46 1hqc_A RUVB; extended AAA-ATPa 99.7 1.1E-15 3.9E-20 169.9 17.7 202 814-1037 9-218 (324)
47 2qp9_X Vacuolar protein sortin 99.7 2.6E-16 9E-21 179.6 12.8 229 303-751 33-272 (355)
48 3hws_A ATP-dependent CLP prote 99.7 2.2E-16 7.6E-21 180.0 11.6 223 818-1040 16-325 (363)
49 3m6a_A ATP-dependent protease 99.7 3.3E-16 1.1E-20 188.5 13.6 231 816-1084 80-342 (543)
50 3eie_A Vacuolar protein sortin 99.7 2.9E-16 1E-20 176.4 12.2 219 315-752 11-240 (322)
51 2chg_A Replication factor C sm 99.6 3E-14 1E-18 147.2 23.6 184 813-1034 13-208 (226)
52 2v1u_A Cell division control p 99.6 1.7E-14 5.8E-19 163.0 23.1 203 815-1037 17-256 (387)
53 2z4s_A Chromosomal replication 99.6 1.2E-14 4E-19 170.7 21.0 199 813-1037 101-313 (440)
54 3bos_A Putative DNA replicatio 99.6 4E-14 1.4E-18 149.2 22.0 205 813-1081 24-241 (242)
55 3pvs_A Replication-associated 99.6 9.2E-15 3.1E-19 172.0 18.4 182 814-1036 23-221 (447)
56 1jbk_A CLPB protein; beta barr 99.6 1.2E-15 4E-20 154.2 9.3 158 814-996 19-194 (195)
57 1njg_A DNA polymerase III subu 99.6 3.2E-14 1.1E-18 148.4 20.5 184 814-1034 20-232 (250)
58 4fcw_A Chaperone protein CLPB; 99.6 1E-14 3.5E-19 161.2 17.6 215 818-1042 18-283 (311)
59 2zan_A Vacuolar protein sortin 99.6 1.3E-15 4.4E-20 179.0 10.3 229 303-751 116-356 (444)
60 1g41_A Heat shock protein HSLU 99.6 1.8E-14 6E-19 168.8 19.5 180 818-997 16-346 (444)
61 1r6b_X CLPA protein; AAA+, N-t 99.6 1.2E-14 4.1E-19 181.0 19.0 225 814-1084 183-434 (758)
62 1g8p_A Magnesium-chelatase 38 99.6 1.9E-14 6.6E-19 161.5 18.0 167 813-1000 20-232 (350)
63 1l8q_A Chromosomal replication 99.6 6E-14 2E-18 157.1 21.8 196 813-1036 7-214 (324)
64 2r44_A Uncharacterized protein 99.6 1E-14 3.6E-19 163.6 15.1 164 816-1002 26-200 (331)
65 2qby_B CDC6 homolog 3, cell di 99.6 4.7E-14 1.6E-18 160.1 20.4 194 817-1037 20-252 (384)
66 3u61_B DNA polymerase accessor 99.6 2.7E-14 9.1E-19 159.6 17.8 184 814-1034 23-220 (324)
67 3pxg_A Negative regulator of g 99.6 9.1E-15 3.1E-19 172.9 14.8 182 814-1035 177-383 (468)
68 2x8a_A Nuclear valosin-contain 99.6 6E-15 2.1E-19 162.8 12.1 246 317-784 5-266 (274)
69 3hu3_A Transitional endoplasmi 99.5 1.2E-14 4E-19 172.9 10.8 270 318-825 200-485 (489)
70 2p65_A Hypothetical protein PF 99.5 1.4E-14 4.8E-19 146.4 9.7 150 814-988 19-187 (187)
71 1um8_A ATP-dependent CLP prote 99.5 5.3E-14 1.8E-18 161.0 15.0 223 818-1040 22-342 (376)
72 1fnn_A CDC6P, cell division co 99.5 8.9E-13 3E-17 149.5 24.2 200 816-1038 16-255 (389)
73 2qby_A CDC6 homolog 1, cell di 99.5 3.8E-13 1.3E-17 151.6 21.1 201 815-1037 18-252 (386)
74 3b9p_A CG5977-PA, isoform A; A 99.5 1.5E-13 5.3E-18 151.4 16.9 258 304-784 4-274 (297)
75 1qvr_A CLPB protein; coiled co 99.5 4.7E-14 1.6E-18 178.2 14.5 199 814-1037 167-392 (854)
76 3cf0_A Transitional endoplasmi 99.5 5.9E-15 2E-19 164.4 5.5 216 316-752 9-241 (301)
77 1sxj_D Activator 1 41 kDa subu 99.5 3.3E-13 1.1E-17 151.4 19.5 185 813-1035 33-240 (353)
78 3te6_A Regulatory protein SIR3 99.5 4.4E-13 1.5E-17 151.0 19.9 160 819-1003 22-214 (318)
79 2c9o_A RUVB-like 1; hexameric 99.5 4.3E-14 1.5E-18 166.5 12.2 128 913-1084 297-438 (456)
80 1sxj_A Activator 1 95 kDa subu 99.5 7.6E-14 2.6E-18 166.9 14.5 200 813-1027 35-250 (516)
81 3pxi_A Negative regulator of g 99.5 1.4E-13 4.7E-18 171.7 14.6 183 814-1036 177-384 (758)
82 1in4_A RUVB, holliday junction 99.5 2.9E-12 9.9E-17 144.8 23.1 201 814-1037 22-230 (334)
83 3d8b_A Fidgetin-like protein 1 99.5 5E-13 1.7E-17 152.5 16.8 255 307-784 70-336 (357)
84 2chq_A Replication factor C sm 99.5 6.6E-13 2.3E-17 146.4 17.3 188 813-1034 13-208 (319)
85 2bjv_A PSP operon transcriptio 99.5 2.9E-13 9.8E-18 147.1 13.7 201 814-1035 3-238 (265)
86 1sxj_B Activator 1 37 kDa subu 99.4 1.4E-12 4.7E-17 144.1 18.4 183 813-1033 17-212 (323)
87 1iqp_A RFCS; clamp loader, ext 99.4 1.7E-12 5.8E-17 143.6 19.0 189 813-1035 21-217 (327)
88 1jr3_A DNA polymerase III subu 99.4 2.3E-12 7.7E-17 145.7 19.3 184 814-1034 13-225 (373)
89 1ojl_A Transcriptional regulat 99.4 3.2E-13 1.1E-17 151.1 11.3 199 818-1037 3-235 (304)
90 2ce7_A Cell division protein F 99.4 6.6E-13 2.3E-17 157.2 12.5 127 558-750 97-239 (476)
91 3vfd_A Spastin; ATPase, microt 99.4 7.2E-13 2.5E-17 152.6 12.0 89 303-399 97-185 (389)
92 1sxj_E Activator 1 40 kDa subu 99.4 6.3E-12 2.2E-16 141.6 16.5 188 813-1035 10-242 (354)
93 1lv7_A FTSH; alpha/beta domain 99.3 6E-12 2.1E-16 136.1 14.4 75 313-395 3-78 (257)
94 3h4m_A Proteasome-activating n 99.3 3.7E-12 1.3E-16 139.3 12.1 74 316-396 11-85 (285)
95 3f9v_A Minichromosome maintena 99.3 3.9E-13 1.3E-17 163.4 4.0 173 818-1002 296-492 (595)
96 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 3.4E-12 1.2E-16 152.0 10.2 161 818-1000 23-196 (500)
97 2qz4_A Paraplegin; AAA+, SPG7, 99.3 1.2E-11 4.2E-16 133.0 11.8 73 318-398 2-75 (262)
98 1sxj_C Activator 1 40 kDa subu 99.3 1.1E-10 3.6E-15 131.8 19.9 174 813-1023 21-206 (340)
99 2dhr_A FTSH; AAA+ protein, hex 99.3 4.7E-12 1.6E-16 150.7 8.8 66 682-749 185-253 (499)
100 3n70_A Transport activator; si 99.2 6.4E-12 2.2E-16 125.0 7.6 132 818-988 2-143 (145)
101 3co5_A Putative two-component 99.2 2.6E-12 8.8E-17 127.7 3.5 132 818-988 5-141 (143)
102 2r62_A Cell division protease 99.2 4.4E-12 1.5E-16 137.7 4.2 74 312-393 1-75 (268)
103 1a5t_A Delta prime, HOLB; zinc 99.2 3.4E-10 1.2E-14 127.8 19.6 166 822-1024 7-200 (334)
104 3k1j_A LON protease, ATP-depen 99.1 1.4E-10 4.7E-15 141.3 12.4 223 813-1082 37-374 (604)
105 1w5s_A Origin recognition comp 99.1 1.2E-09 4E-14 124.9 18.9 206 816-1037 21-273 (412)
106 1ixz_A ATP-dependent metallopr 99.1 1.1E-10 3.7E-15 126.0 8.3 67 682-750 170-239 (254)
107 2gno_A DNA polymerase III, gam 99.1 2.6E-09 8.7E-14 119.8 18.0 142 821-1000 1-152 (305)
108 3cmw_A Protein RECA, recombina 99.0 3E-10 1E-14 150.2 9.7 153 811-966 1014-1217(1706)
109 1gxc_A CHK2, CDS1, serine/thre 99.0 9.1E-10 3.1E-14 111.1 10.7 103 4-108 32-145 (149)
110 1iy2_A ATP-dependent metallopr 99.0 9.4E-10 3.2E-14 120.6 11.1 125 559-749 122-262 (278)
111 3vlf_B 26S protease regulatory 99.0 1E-09 3.5E-14 101.1 8.3 87 988-1101 2-88 (88)
112 2krk_A 26S protease regulatory 98.9 9.4E-10 3.2E-14 101.0 7.1 78 983-1086 7-84 (86)
113 3kw6_A 26S protease regulatory 98.9 1.4E-09 4.9E-14 97.5 8.2 76 985-1086 1-76 (78)
114 1ny5_A Transcriptional regulat 98.9 3E-09 1E-13 122.8 12.8 197 818-1035 138-368 (387)
115 3t15_A Ribulose bisphosphate c 98.8 3.2E-09 1.1E-13 118.0 6.5 101 570-738 97-222 (293)
116 3aji_B S6C, proteasome (prosom 98.8 5.7E-09 2E-13 94.6 7.0 75 988-1088 2-76 (83)
117 1lgp_A Cell cycle checkpoint p 98.8 8.9E-09 3E-13 99.3 7.9 101 4-107 6-114 (116)
118 4akg_A Glutathione S-transfera 98.8 2E-08 6.7E-13 138.3 13.0 139 853-1002 1268-1433(2695)
119 3dzd_A Transcriptional regulat 98.7 2.3E-08 7.8E-13 114.8 10.8 197 818-1035 130-359 (368)
120 4h87_A Kanadaptin; FHA domain 98.7 2.5E-08 8.5E-13 98.4 9.0 81 19-102 40-129 (130)
121 1g6g_A Protein kinase RAD53; b 98.7 3.8E-08 1.3E-12 96.6 9.3 96 4-103 7-119 (127)
122 2kjq_A DNAA-related protein; s 98.6 1.2E-07 4.2E-12 95.1 11.6 106 852-985 36-146 (149)
123 3ec2_A DNA replication protein 98.6 5.8E-08 2E-12 99.2 8.5 98 813-923 6-112 (180)
124 3f8t_A Predicted ATPase involv 98.6 1.8E-07 6.2E-12 109.8 13.1 152 819-991 215-385 (506)
125 2fna_A Conserved hypothetical 98.6 1.4E-06 4.7E-11 96.9 18.8 185 815-1032 11-252 (357)
126 2jqj_A DNA damage response pro 98.5 2.5E-07 8.5E-12 93.4 10.5 88 14-106 31-124 (151)
127 2w58_A DNAI, primosome compone 98.5 1.3E-07 4.5E-12 98.0 8.6 69 853-923 55-127 (202)
128 2qen_A Walker-type ATPase; unk 98.5 2.5E-06 8.5E-11 94.7 17.2 188 815-1031 10-247 (350)
129 2dzn_B 26S protease regulatory 98.4 6.2E-08 2.1E-12 87.8 2.1 69 990-1084 1-69 (82)
130 2krk_A 26S protease regulatory 98.4 1E-07 3.5E-12 87.4 3.4 75 694-784 9-83 (86)
131 3hx1_A SLR1951 protein; P74513 98.3 9.7E-07 3.3E-11 87.1 8.6 83 14-104 24-114 (131)
132 2pie_A E3 ubiquitin-protein li 98.3 1.7E-06 5.7E-11 86.0 10.4 88 12-103 19-116 (138)
133 1g3g_A Protien kinase SPK1; FH 98.3 1.4E-06 4.9E-11 89.1 9.9 80 21-104 65-148 (164)
134 2vhj_A Ntpase P4, P4; non- hyd 98.3 3.2E-07 1.1E-11 103.3 5.0 111 853-972 124-240 (331)
135 2r2a_A Uncharacterized protein 98.3 5.6E-07 1.9E-11 94.9 6.4 127 853-990 6-156 (199)
136 4akg_A Glutathione S-transfera 98.3 2.5E-06 8.6E-11 117.9 14.0 132 853-997 646-790 (2695)
137 1dmz_A Protein (protein kinase 98.3 1.8E-06 6.1E-11 87.9 9.3 90 12-103 17-122 (158)
138 4ejq_A Kinesin-like protein KI 98.3 2.2E-06 7.4E-11 86.9 9.9 83 17-104 58-144 (154)
139 3kw6_A 26S protease regulatory 98.2 6E-07 2E-11 80.4 3.6 55 694-750 1-56 (78)
140 3po8_A RV0020C protein, putati 98.2 3.5E-06 1.2E-10 79.0 8.4 81 12-102 15-95 (100)
141 2qgz_A Helicase loader, putati 98.2 1.2E-06 4.2E-11 98.0 5.8 70 852-923 152-226 (308)
142 2xt9_B Putative signal transdu 98.2 6.2E-06 2.1E-10 79.3 9.8 84 12-105 23-106 (115)
143 3vlf_B 26S protease regulatory 98.1 1.4E-06 4.9E-11 80.0 4.5 71 697-784 2-73 (88)
144 2kb3_A Oxoglutarate dehydrogen 98.1 4.5E-06 1.5E-10 83.7 8.5 82 13-104 59-140 (143)
145 1uht_A Expressed protein; FHA 98.1 4.4E-06 1.5E-10 80.7 8.1 84 14-104 26-111 (118)
146 1r21_A Antigen KI-67; beta san 98.1 3.5E-06 1.2E-10 82.6 7.4 82 14-104 27-108 (128)
147 1mzk_A Kinase associated prote 98.1 3.7E-06 1.3E-10 83.7 7.5 79 21-104 33-119 (139)
148 2csw_A Ubiquitin ligase protei 98.1 3.3E-06 1.1E-10 84.6 7.2 77 15-94 30-111 (145)
149 1qu5_A Protein kinase SPK1; FH 98.1 2.5E-06 8.6E-11 88.8 5.6 88 13-102 42-145 (182)
150 1wln_A Afadin; beta sandwich, 98.1 9.5E-06 3.2E-10 78.7 9.1 81 15-103 31-113 (120)
151 3i6u_A CDS1, serine/threonine- 98.1 6.3E-06 2.2E-10 95.4 9.2 101 4-106 12-123 (419)
152 3els_A PRE-mRNA leakage protei 98.1 7.5E-06 2.6E-10 83.3 8.5 87 14-102 49-156 (158)
153 3aji_B S6C, proteasome (prosom 98.1 2.5E-06 8.4E-11 77.2 4.4 71 697-784 2-73 (83)
154 2kfu_A RV1827 PThr 22; FHA dom 98.0 1.5E-05 5.2E-10 81.4 9.8 82 13-104 68-149 (162)
155 3va4_A Mediator of DNA damage 98.0 1E-05 3.4E-10 80.0 8.1 86 13-103 38-125 (132)
156 2jpe_A Nuclear inhibitor of pr 98.0 5E-06 1.7E-10 82.8 5.6 85 15-102 49-135 (140)
157 3syl_A Protein CBBX; photosynt 98.0 2.5E-05 8.5E-10 86.0 11.0 125 572-752 130-267 (309)
158 1tue_A Replication protein E1; 97.9 1E-05 3.4E-10 85.8 7.3 29 853-881 59-87 (212)
159 3fm8_A Kinesin-like protein KI 97.9 3.2E-05 1.1E-09 75.6 10.1 73 21-101 49-121 (124)
160 1g41_A Heat shock protein HSLU 97.9 4.9E-06 1.7E-10 97.6 4.8 68 330-400 21-88 (444)
161 4egx_A Kinesin-like protein KI 97.9 3.7E-05 1.3E-09 80.2 9.9 82 18-104 89-174 (184)
162 3gqs_A Adenylate cyclase-like 97.9 2.5E-05 8.5E-10 74.0 7.9 80 15-102 19-100 (106)
163 3uk6_A RUVB-like 2; hexameric 97.9 1.5E-05 5.3E-10 89.8 7.5 141 556-750 171-313 (368)
164 3oun_A Putative uncharacterize 97.9 2.5E-05 8.5E-10 79.4 8.1 73 14-93 79-151 (157)
165 3elv_A PRE-mRNA leakage protei 97.9 3E-05 1E-09 81.8 8.7 80 14-95 96-193 (205)
166 3vkg_A Dynein heavy chain, cyt 97.8 3.5E-05 1.2E-09 107.5 11.2 140 853-1002 1305-1471(3245)
167 3vkg_A Dynein heavy chain, cyt 97.8 9.2E-05 3.1E-09 103.4 14.2 131 853-996 605-749 (3245)
168 3cmu_A Protein RECA, recombina 97.7 4.9E-05 1.7E-09 102.4 10.0 78 849-926 1424-1520(2050)
169 3uv0_A Mutator 2, isoform B; F 97.7 7.3E-05 2.5E-09 69.8 8.2 63 18-88 19-81 (102)
170 1u0j_A DNA replication protein 97.7 4.6E-05 1.6E-09 83.8 8.0 27 852-878 104-130 (267)
171 1d2n_A N-ethylmaleimide-sensit 97.7 0.00014 4.9E-09 78.9 11.3 36 358-395 62-97 (272)
172 2dzn_B 26S protease regulatory 97.7 2.5E-05 8.5E-10 70.6 3.9 67 699-782 1-68 (82)
173 3m6a_A ATP-dependent protease 97.6 3.6E-05 1.2E-09 92.7 6.0 35 359-395 107-141 (543)
174 2ff4_A Probable regulatory pro 97.6 0.00013 4.5E-09 84.1 9.8 82 13-103 299-380 (388)
175 1jr3_D DNA polymerase III, del 97.5 0.00095 3.3E-08 74.9 15.4 154 852-1031 18-186 (343)
176 3kt9_A Aprataxin; FHA domain, 97.5 0.00028 9.6E-09 66.7 8.8 93 4-102 6-99 (102)
177 2brf_A Bifunctional polynucleo 97.5 0.00023 7.9E-09 68.0 8.3 93 4-102 11-105 (110)
178 1ye8_A Protein THEP1, hypothet 97.5 0.00056 1.9E-08 70.5 11.6 28 854-881 2-29 (178)
179 1yj5_C 5' polynucleotide kinas 97.3 0.00073 2.5E-08 67.0 9.3 94 4-103 11-106 (143)
180 1ujx_A Polynucleotide kinase 3 97.2 0.00044 1.5E-08 66.9 6.6 93 4-102 18-112 (119)
181 1ofh_A ATP-dependent HSL prote 97.1 0.00097 3.3E-08 72.8 9.4 68 329-399 20-87 (310)
182 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0034 1.2E-07 65.2 13.0 74 851-924 22-136 (235)
183 1svm_A Large T antigen; AAA+ f 97.1 0.00022 7.5E-09 82.2 4.1 112 851-984 168-282 (377)
184 1z6t_A APAF-1, apoptotic prote 97.1 0.0038 1.3E-07 74.9 15.0 171 817-1029 124-327 (591)
185 3pxg_A Negative regulator of g 97.0 0.00021 7.1E-09 84.4 3.1 46 559-616 257-302 (468)
186 3pfi_A Holliday junction ATP-d 97.0 0.0026 8.8E-08 70.9 11.5 62 320-395 27-88 (338)
187 2cvh_A DNA repair and recombin 97.0 0.0028 9.5E-08 65.6 10.5 37 851-887 19-55 (220)
188 2r8r_A Sensor protein; KDPD, P 97.0 0.012 4.1E-07 63.2 15.5 33 853-885 7-42 (228)
189 1xp8_A RECA protein, recombina 97.0 0.0027 9.3E-08 72.8 11.1 75 851-925 73-166 (366)
190 3hr8_A Protein RECA; alpha and 96.9 0.0028 9.5E-08 72.5 11.0 75 851-925 60-153 (356)
191 1n0w_A DNA repair protein RAD5 96.9 0.0024 8.2E-08 67.2 9.6 76 851-926 23-134 (243)
192 2zr9_A Protein RECA, recombina 96.9 0.0033 1.1E-07 71.5 11.3 75 851-925 60-153 (349)
193 3bos_A Putative DNA replicatio 96.9 0.005 1.7E-07 64.1 11.7 26 360-387 52-77 (242)
194 1sxj_A Activator 1 95 kDa subu 96.9 0.016 5.4E-07 69.2 17.4 77 320-400 37-115 (516)
195 2r44_A Uncharacterized protein 96.8 0.021 7.1E-07 63.5 16.8 33 361-395 47-79 (331)
196 1l8q_A Chromosomal replication 96.8 0.0025 8.6E-08 70.8 9.2 35 359-395 36-73 (324)
197 1jbk_A CLPB protein; beta barr 96.8 0.0068 2.3E-07 60.2 11.2 53 557-613 102-159 (195)
198 3sfz_A APAF-1, apoptotic pepti 96.8 0.015 5.2E-07 75.1 17.5 172 817-1028 124-326 (1249)
199 3trf_A Shikimate kinase, SK; a 96.7 0.00082 2.8E-08 68.2 3.8 33 852-884 5-37 (185)
200 1qhx_A CPT, protein (chloramph 96.7 0.0014 4.9E-08 65.8 5.2 34 853-886 4-37 (178)
201 1u94_A RECA protein, recombina 96.6 0.0075 2.6E-07 68.9 11.3 75 851-925 62-155 (356)
202 1hqc_A RUVB; extended AAA-ATPa 96.6 0.0029 1E-07 69.7 7.7 33 360-394 38-70 (324)
203 2orw_A Thymidine kinase; TMTK, 96.6 0.0022 7.6E-08 66.2 6.1 30 854-883 5-37 (184)
204 3dm5_A SRP54, signal recogniti 96.6 0.058 2E-06 63.3 18.6 73 851-923 99-194 (443)
205 1v5w_A DMC1, meiotic recombina 96.5 0.0061 2.1E-07 69.0 9.9 76 851-926 121-234 (343)
206 2v1u_A Cell division control p 96.5 0.019 6.5E-07 64.2 13.8 134 557-749 117-258 (387)
207 2chg_A Replication factor C sm 96.5 0.018 6.1E-07 58.6 12.4 40 571-613 101-140 (226)
208 4a0e_A YSCD, type III secretio 96.5 0.0047 1.6E-07 60.1 7.4 76 11-94 15-91 (123)
209 3cmu_A Protein RECA, recombina 96.5 0.0036 1.2E-07 84.7 8.9 77 849-925 729-824 (2050)
210 2b8t_A Thymidine kinase; deoxy 96.5 0.013 4.3E-07 62.8 11.4 70 853-923 13-101 (223)
211 2z43_A DNA repair and recombin 96.5 0.0048 1.7E-07 69.1 8.3 75 851-925 106-217 (324)
212 3u61_B DNA polymerase accessor 96.5 0.008 2.7E-07 66.6 10.1 59 320-396 24-82 (324)
213 3vaa_A Shikimate kinase, SK; s 96.5 0.0015 5.2E-08 67.5 3.9 34 851-884 24-57 (199)
214 3kb2_A SPBC2 prophage-derived 96.4 0.002 6.8E-08 64.0 4.2 31 854-884 3-33 (173)
215 2dr3_A UPF0273 protein PH0284; 96.4 0.013 4.5E-07 61.5 10.5 36 851-886 22-60 (247)
216 3io5_A Recombination and repai 96.3 0.0087 3E-07 67.4 9.3 73 854-926 30-126 (333)
217 2iut_A DNA translocase FTSK; n 96.3 0.033 1.1E-06 67.2 14.6 74 913-997 345-420 (574)
218 3iij_A Coilin-interacting nucl 96.3 0.0023 7.7E-08 64.8 3.8 31 853-883 12-42 (180)
219 2iyv_A Shikimate kinase, SK; t 96.3 0.0021 7.2E-08 65.2 3.5 31 854-884 4-34 (184)
220 2rhm_A Putative kinase; P-loop 96.2 0.0037 1.3E-07 63.4 5.1 32 852-883 5-36 (193)
221 1via_A Shikimate kinase; struc 96.2 0.0031 1E-07 63.6 4.4 30 854-883 6-35 (175)
222 4a74_A DNA repair and recombin 96.2 0.012 4E-07 61.3 8.9 37 851-887 24-69 (231)
223 2p5t_B PEZT; postsegregational 96.2 0.015 5E-07 62.7 9.9 38 851-888 31-68 (253)
224 1wv3_A Similar to DNA segregat 96.1 0.0066 2.3E-07 65.6 6.8 64 21-92 93-160 (238)
225 1zuh_A Shikimate kinase; alpha 96.1 0.004 1.4E-07 62.2 4.7 32 853-884 8-39 (168)
226 2ehv_A Hypothetical protein PH 96.1 0.028 9.5E-07 59.2 11.4 35 851-885 29-67 (251)
227 1y63_A LMAJ004144AAA protein; 96.1 0.0027 9.2E-08 64.9 3.4 32 853-884 11-43 (184)
228 3lda_A DNA repair protein RAD5 96.1 0.011 3.8E-07 68.6 8.8 76 851-926 177-288 (400)
229 1vma_A Cell division protein F 96.1 0.06 2.1E-06 60.2 14.3 72 851-922 103-197 (306)
230 1kag_A SKI, shikimate kinase I 96.0 0.0044 1.5E-07 61.9 4.6 30 853-882 5-34 (173)
231 1aky_A Adenylate kinase; ATP:A 96.0 0.0047 1.6E-07 64.7 5.0 32 852-883 4-35 (220)
232 3upu_A ATP-dependent DNA helic 96.0 0.01 3.4E-07 69.7 8.2 23 854-876 47-69 (459)
233 1tev_A UMP-CMP kinase; ploop, 96.0 0.0048 1.6E-07 62.4 4.8 31 853-883 4-34 (196)
234 2a5y_B CED-4; apoptosis; HET: 96.0 0.037 1.3E-06 66.3 13.3 172 820-1029 131-336 (549)
235 4fcw_A Chaperone protein CLPB; 96.0 0.029 9.9E-07 61.3 11.3 36 361-398 48-86 (311)
236 3lw7_A Adenylate kinase relate 96.0 0.0044 1.5E-07 61.1 4.3 29 854-883 3-31 (179)
237 2ze6_A Isopentenyl transferase 96.0 0.0039 1.3E-07 67.5 4.2 32 854-885 3-34 (253)
238 2cdn_A Adenylate kinase; phosp 96.0 0.0058 2E-07 63.0 5.2 31 853-883 21-51 (201)
239 2c95_A Adenylate kinase 1; tra 95.9 0.0054 1.9E-07 62.3 4.8 33 852-884 9-41 (196)
240 1e6c_A Shikimate kinase; phosp 95.9 0.0049 1.7E-07 61.5 4.4 30 854-883 4-33 (173)
241 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.012 4.2E-07 63.6 7.5 35 853-887 5-42 (260)
242 2zts_A Putative uncharacterize 95.8 0.041 1.4E-06 57.7 11.2 75 851-925 29-149 (251)
243 3cm0_A Adenylate kinase; ATP-b 95.8 0.0053 1.8E-07 62.1 4.1 31 853-883 5-35 (186)
244 3t61_A Gluconokinase; PSI-biol 95.8 0.007 2.4E-07 62.4 5.0 32 852-883 18-49 (202)
245 3bh0_A DNAB-like replicative h 95.8 0.055 1.9E-06 60.3 12.6 37 850-886 66-105 (315)
246 2p65_A Hypothetical protein PF 95.8 0.013 4.6E-07 58.2 6.7 53 557-613 102-160 (187)
247 1gvn_B Zeta; postsegregational 95.7 0.013 4.6E-07 64.6 7.3 37 852-888 33-69 (287)
248 2vli_A Antibiotic resistance p 95.7 0.0049 1.7E-07 62.1 3.4 29 853-881 6-34 (183)
249 2ius_A DNA translocase FTSK; n 95.7 0.072 2.5E-06 63.6 13.9 76 912-998 297-375 (512)
250 2pt5_A Shikimate kinase, SK; a 95.7 0.0075 2.6E-07 59.9 4.7 31 854-884 2-32 (168)
251 1ly1_A Polynucleotide kinase; 95.7 0.0049 1.7E-07 61.6 3.3 29 853-881 3-32 (181)
252 2qby_B CDC6 homolog 3, cell di 95.7 0.085 2.9E-06 59.2 13.9 36 360-397 45-91 (384)
253 3dl0_A Adenylate kinase; phosp 95.7 0.0067 2.3E-07 63.2 4.5 30 854-883 2-31 (216)
254 3tlx_A Adenylate kinase 2; str 95.7 0.0081 2.8E-07 64.5 5.2 33 851-883 28-60 (243)
255 2fz4_A DNA repair protein RAD2 95.7 0.037 1.3E-06 59.1 10.4 33 854-886 110-142 (237)
256 1qf9_A UMP/CMP kinase, protein 95.7 0.0074 2.5E-07 60.9 4.6 31 853-883 7-37 (194)
257 3fb4_A Adenylate kinase; psych 95.7 0.0071 2.4E-07 62.9 4.6 30 854-883 2-31 (216)
258 2bwj_A Adenylate kinase 5; pho 95.7 0.0073 2.5E-07 61.5 4.6 31 853-883 13-43 (199)
259 2i1q_A DNA repair and recombin 95.7 0.014 4.8E-07 65.0 7.2 75 851-925 97-218 (322)
260 1ak2_A Adenylate kinase isoenz 95.7 0.0082 2.8E-07 63.6 5.1 32 852-883 16-47 (233)
261 1pzn_A RAD51, DNA repair and r 95.7 0.026 8.7E-07 64.1 9.4 37 851-887 130-175 (349)
262 1kht_A Adenylate kinase; phosp 95.7 0.0065 2.2E-07 61.3 4.1 25 853-877 4-28 (192)
263 3e1s_A Exodeoxyribonuclease V, 95.7 0.0076 2.6E-07 73.1 5.3 33 853-885 205-240 (574)
264 1zd8_A GTP:AMP phosphotransfer 95.6 0.0073 2.5E-07 63.6 4.5 32 852-883 7-38 (227)
265 1knq_A Gluconate kinase; ALFA/ 95.6 0.0098 3.4E-07 59.7 5.0 31 852-882 8-38 (175)
266 3jvv_A Twitching mobility prot 95.6 0.015 5E-07 66.5 7.0 69 853-921 124-206 (356)
267 1ukz_A Uridylate kinase; trans 95.6 0.0096 3.3E-07 61.2 4.9 33 852-884 15-47 (203)
268 3be4_A Adenylate kinase; malar 95.5 0.0081 2.8E-07 63.0 4.3 31 853-883 6-36 (217)
269 1zp6_A Hypothetical protein AT 95.5 0.0066 2.3E-07 61.6 3.5 36 852-887 9-44 (191)
270 1nlf_A Regulatory protein REPA 95.5 0.05 1.7E-06 59.2 10.7 25 852-876 30-54 (279)
271 3sr0_A Adenylate kinase; phosp 95.5 0.0092 3.1E-07 62.9 4.5 29 854-882 2-30 (206)
272 3umf_A Adenylate kinase; rossm 95.4 0.011 3.6E-07 63.1 4.8 30 852-881 29-58 (217)
273 2r6a_A DNAB helicase, replicat 95.4 0.045 1.6E-06 64.1 10.7 37 850-886 201-241 (454)
274 2pbr_A DTMP kinase, thymidylat 95.4 0.012 4E-07 59.6 5.0 32 854-885 2-36 (195)
275 1zak_A Adenylate kinase; ATP:A 95.4 0.0085 2.9E-07 62.8 3.9 30 853-882 6-35 (222)
276 4eun_A Thermoresistant glucoki 95.4 0.012 4.1E-07 60.8 5.0 31 851-881 28-58 (200)
277 1cr0_A DNA primase/helicase; R 95.3 0.063 2.2E-06 58.7 10.8 35 851-885 34-72 (296)
278 2pez_A Bifunctional 3'-phospho 95.3 0.015 5.3E-07 58.6 5.4 35 852-886 5-42 (179)
279 1e4v_A Adenylate kinase; trans 95.3 0.012 4E-07 61.5 4.6 30 854-883 2-31 (214)
280 2q6t_A DNAB replication FORK h 95.3 0.063 2.1E-06 62.8 11.2 37 850-886 198-238 (444)
281 3crm_A TRNA delta(2)-isopenten 95.3 0.031 1.1E-06 63.0 8.2 34 853-886 6-39 (323)
282 3cmw_A Protein RECA, recombina 95.3 0.032 1.1E-06 74.9 9.4 75 854-928 1433-1526(1706)
283 2i3b_A HCR-ntpase, human cance 95.2 0.073 2.5E-06 55.2 10.1 23 854-876 3-25 (189)
284 2jaq_A Deoxyguanosine kinase; 95.2 0.012 4.3E-07 59.9 4.2 29 854-882 2-30 (205)
285 2v54_A DTMP kinase, thymidylat 95.1 0.014 4.7E-07 59.8 4.5 34 852-885 4-38 (204)
286 2ga8_A Hypothetical 39.9 kDa p 95.1 0.011 3.9E-07 67.4 4.1 30 853-882 25-54 (359)
287 1cke_A CK, MSSA, protein (cyti 95.1 0.015 5.2E-07 60.6 4.7 30 853-882 6-35 (227)
288 1nks_A Adenylate kinase; therm 95.1 0.0088 3E-07 60.3 2.8 31 854-884 3-36 (194)
289 3kl4_A SRP54, signal recogniti 95.1 0.14 4.9E-06 59.8 13.3 73 851-923 96-191 (433)
290 2xb4_A Adenylate kinase; ATP-b 95.1 0.014 4.9E-07 61.5 4.4 30 854-883 2-31 (223)
291 2z0h_A DTMP kinase, thymidylat 95.1 0.018 6E-07 58.6 4.9 31 855-885 3-36 (197)
292 2eyu_A Twitching motility prot 95.0 0.031 1.1E-06 60.9 7.1 70 851-920 24-107 (261)
293 2if2_A Dephospho-COA kinase; a 94.9 0.011 3.8E-07 60.8 3.0 30 854-884 3-32 (204)
294 3ake_A Cytidylate kinase; CMP 94.8 0.019 6.5E-07 58.8 4.5 31 854-884 4-34 (208)
295 3b6e_A Interferon-induced heli 94.8 0.081 2.8E-06 54.1 9.3 24 853-876 49-72 (216)
296 1g5t_A COB(I)alamin adenosyltr 94.8 0.15 5.3E-06 53.4 11.3 113 853-981 29-174 (196)
297 1q57_A DNA primase/helicase; d 94.8 0.097 3.3E-06 62.0 11.1 36 851-886 241-280 (503)
298 2plr_A DTMP kinase, probable t 94.8 0.029 9.9E-07 57.5 5.6 32 853-884 5-38 (213)
299 3uie_A Adenylyl-sulfate kinase 94.7 0.029 1E-06 57.9 5.6 36 851-886 24-62 (200)
300 3pvs_A Replication-associated 94.7 0.1 3.4E-06 61.3 10.8 32 361-394 51-82 (447)
301 3bgw_A DNAB-like replicative h 94.7 0.14 4.6E-06 60.2 11.9 37 850-886 195-234 (444)
302 1uf9_A TT1252 protein; P-loop, 94.7 0.021 7.1E-07 58.3 4.4 32 852-884 8-39 (203)
303 4e22_A Cytidylate kinase; P-lo 94.7 0.026 9E-07 60.8 5.2 31 852-882 27-57 (252)
304 2bbw_A Adenylate kinase 4, AK4 94.6 0.023 7.9E-07 60.6 4.6 30 852-881 27-56 (246)
305 2wwf_A Thymidilate kinase, put 94.6 0.011 3.9E-07 60.8 2.1 28 852-879 10-37 (212)
306 3r20_A Cytidylate kinase; stru 94.5 0.026 9E-07 60.7 4.8 30 853-882 10-39 (233)
307 2ewv_A Twitching motility prot 94.5 0.039 1.3E-06 63.2 6.3 70 851-920 135-218 (372)
308 1fnn_A CDC6P, cell division co 94.4 0.33 1.1E-05 54.2 13.9 52 557-613 112-167 (389)
309 2grj_A Dephospho-COA kinase; T 94.4 0.019 6.6E-07 59.7 3.4 31 854-884 14-44 (192)
310 3hws_A ATP-dependent CLP prote 94.4 0.036 1.2E-06 62.6 5.9 67 330-398 21-87 (363)
311 1jjv_A Dephospho-COA kinase; P 94.4 0.023 7.8E-07 58.6 3.9 29 854-883 4-32 (206)
312 2gxq_A Heat resistant RNA depe 94.4 0.11 3.7E-06 53.1 8.9 23 853-875 39-62 (207)
313 1nn5_A Similar to deoxythymidy 94.4 0.014 4.8E-07 60.2 2.1 26 852-877 9-34 (215)
314 1p9r_A General secretion pathw 94.3 0.14 4.7E-06 59.7 10.7 93 814-921 144-246 (418)
315 3pie_A 5'->3' exoribonuclease 94.3 0.022 7.4E-07 72.9 4.1 77 451-537 1050-1126(1155)
316 3nwj_A ATSK2; P loop, shikimat 94.3 0.03 1E-06 60.8 4.7 32 853-884 49-80 (250)
317 1uj2_A Uridine-cytidine kinase 94.2 0.04 1.4E-06 59.1 5.4 39 852-890 22-68 (252)
318 2chq_A Replication factor C sm 94.2 0.07 2.4E-06 58.1 7.4 40 571-613 101-140 (319)
319 3a8t_A Adenylate isopentenyltr 94.0 0.023 8E-07 64.4 3.2 34 853-886 41-74 (339)
320 1vt4_I APAF-1 related killer D 94.0 0.2 6.7E-06 64.5 11.7 43 820-875 131-173 (1221)
321 2yvu_A Probable adenylyl-sulfa 94.0 0.054 1.8E-06 54.9 5.6 35 851-885 12-49 (186)
322 4gp7_A Metallophosphoesterase; 94.0 0.13 4.5E-06 51.8 8.4 19 853-871 10-28 (171)
323 1vht_A Dephospho-COA kinase; s 93.9 0.044 1.5E-06 57.1 4.9 30 853-883 5-34 (218)
324 2px0_A Flagellar biosynthesis 93.9 0.21 7.3E-06 55.3 10.6 36 851-886 104-143 (296)
325 1q3t_A Cytidylate kinase; nucl 93.8 0.048 1.7E-06 57.8 5.1 31 852-882 16-46 (236)
326 2h92_A Cytidylate kinase; ross 93.8 0.045 1.5E-06 56.9 4.6 31 853-883 4-34 (219)
327 3foz_A TRNA delta(2)-isopenten 93.7 0.039 1.3E-06 61.9 4.2 36 852-887 10-45 (316)
328 4a1f_A DNAB helicase, replicat 93.6 0.16 5.3E-06 57.6 9.0 37 850-886 44-83 (338)
329 1qde_A EIF4A, translation init 93.6 0.2 6.7E-06 52.0 9.2 60 813-875 13-75 (224)
330 2pt7_A CAG-ALFA; ATPase, prote 93.6 0.05 1.7E-06 61.3 4.8 69 853-921 172-250 (330)
331 2pl3_A Probable ATP-dependent 93.5 0.23 8E-06 52.0 9.7 55 813-870 24-80 (236)
332 1ltq_A Polynucleotide kinase; 93.5 0.041 1.4E-06 60.1 3.9 30 853-882 3-33 (301)
333 2qor_A Guanylate kinase; phosp 93.5 0.041 1.4E-06 56.9 3.7 27 851-877 11-37 (204)
334 3f9v_A Minichromosome maintena 93.5 0.094 3.2E-06 63.8 7.4 55 329-389 300-354 (595)
335 1xx6_A Thymidine kinase; NESG, 93.4 0.16 5.6E-06 52.8 8.0 69 853-923 9-93 (191)
336 2xau_A PRE-mRNA-splicing facto 93.3 0.27 9.1E-06 61.6 11.2 59 814-875 72-132 (773)
337 2qt1_A Nicotinamide riboside k 93.3 0.031 1.1E-06 57.7 2.4 31 852-882 21-52 (207)
338 3d3q_A TRNA delta(2)-isopenten 93.3 0.042 1.4E-06 62.4 3.6 33 853-885 8-40 (340)
339 2f6r_A COA synthase, bifunctio 93.2 0.063 2.2E-06 58.9 4.9 31 852-883 75-105 (281)
340 4b3f_X DNA-binding protein smu 93.2 0.34 1.2E-05 59.3 11.7 70 822-917 191-263 (646)
341 1hv8_A Putative ATP-dependent 93.1 0.2 6.8E-06 55.2 8.8 23 853-875 45-67 (367)
342 1m7g_A Adenylylsulfate kinase; 93.1 0.066 2.3E-06 55.6 4.6 35 852-886 25-63 (211)
343 3zvl_A Bifunctional polynucleo 93.1 0.069 2.4E-06 62.0 5.2 31 852-882 258-288 (416)
344 3fdi_A Uncharacterized protein 93.0 0.061 2.1E-06 56.2 4.1 29 854-882 8-36 (201)
345 1t6n_A Probable ATP-dependent 93.0 0.58 2E-05 48.3 11.6 59 814-875 14-74 (220)
346 2bdt_A BH3686; alpha-beta prot 92.9 0.064 2.2E-06 54.5 4.1 25 854-878 4-28 (189)
347 1um8_A ATP-dependent CLP prote 92.9 0.092 3.1E-06 59.5 5.7 68 330-399 27-109 (376)
348 2z4s_A Chromosomal replication 92.8 0.11 3.9E-06 60.6 6.6 33 360-394 130-167 (440)
349 3exa_A TRNA delta(2)-isopenten 92.7 0.057 2E-06 60.7 3.6 34 853-886 4-37 (322)
350 3huf_A DNA repair and telomere 92.7 0.31 1.1E-05 54.4 9.3 81 15-96 16-107 (325)
351 2oap_1 GSPE-2, type II secreti 92.6 0.079 2.7E-06 63.3 4.8 69 853-921 261-343 (511)
352 2j41_A Guanylate kinase; GMP, 92.5 0.073 2.5E-06 54.4 3.9 25 852-876 6-30 (207)
353 3eph_A TRNA isopentenyltransfe 92.5 0.074 2.5E-06 61.7 4.3 33 853-885 3-35 (409)
354 1kgd_A CASK, peripheral plasma 92.4 0.078 2.7E-06 53.8 3.9 25 853-877 6-30 (180)
355 3llm_A ATP-dependent RNA helic 92.4 0.5 1.7E-05 49.8 10.3 21 853-873 77-97 (235)
356 3tau_A Guanylate kinase, GMP k 92.4 0.069 2.4E-06 55.6 3.5 27 851-877 7-33 (208)
357 1vec_A ATP-dependent RNA helic 92.4 0.32 1.1E-05 49.5 8.5 18 853-870 41-58 (206)
358 1w4r_A Thymidine kinase; type 92.3 0.1 3.4E-06 54.8 4.5 34 853-886 21-57 (195)
359 3asz_A Uridine kinase; cytidin 92.3 0.083 2.8E-06 54.5 3.9 26 852-877 6-31 (211)
360 2yhs_A FTSY, cell division pro 92.3 1.1 3.6E-05 53.4 13.7 26 851-876 292-317 (503)
361 2axn_A 6-phosphofructo-2-kinas 92.2 0.19 6.4E-06 60.2 7.4 35 853-887 36-73 (520)
362 1ex7_A Guanylate kinase; subst 92.1 0.094 3.2E-06 54.4 4.1 25 854-878 3-27 (186)
363 2j37_W Signal recognition part 92.0 0.32 1.1E-05 58.0 9.1 73 851-923 100-195 (504)
364 3tr0_A Guanylate kinase, GMP k 92.0 0.098 3.3E-06 53.4 4.0 24 853-876 8-31 (205)
365 2qmh_A HPR kinase/phosphorylas 92.0 0.061 2.1E-06 56.7 2.5 32 852-884 34-65 (205)
366 1rz3_A Hypothetical protein rb 91.6 0.17 5.8E-06 52.2 5.4 35 852-886 22-59 (201)
367 2xxa_A Signal recognition part 91.6 0.41 1.4E-05 56.0 9.2 74 850-923 98-195 (433)
368 2j9r_A Thymidine kinase; TK1, 91.6 0.45 1.6E-05 50.5 8.7 31 855-885 31-64 (214)
369 3c8u_A Fructokinase; YP_612366 91.4 0.1 3.5E-06 54.1 3.5 27 851-877 21-47 (208)
370 1j8m_F SRP54, signal recogniti 91.4 0.68 2.3E-05 51.3 10.2 72 852-923 98-192 (297)
371 1lvg_A Guanylate kinase, GMP k 91.4 0.11 3.6E-06 53.9 3.5 26 852-877 4-29 (198)
372 3e70_C DPA, signal recognition 91.4 0.46 1.6E-05 53.5 9.0 26 851-876 128-153 (328)
373 1q0u_A Bstdead; DEAD protein, 91.3 0.36 1.2E-05 50.0 7.6 18 853-870 42-59 (219)
374 1gtv_A TMK, thymidylate kinase 91.3 0.06 2.1E-06 55.4 1.5 24 854-877 2-25 (214)
375 1x6v_B Bifunctional 3'-phospho 91.2 0.15 5.3E-06 62.2 5.1 33 853-885 53-88 (630)
376 1c9k_A COBU, adenosylcobinamid 91.0 0.12 4.2E-06 53.4 3.5 32 855-887 2-33 (180)
377 3a00_A Guanylate kinase, GMP k 91.0 0.13 4.3E-06 52.5 3.6 24 854-877 3-26 (186)
378 3iuy_A Probable ATP-dependent 91.0 0.49 1.7E-05 49.3 8.2 18 853-870 58-75 (228)
379 3hdt_A Putative kinase; struct 90.9 0.14 4.8E-06 54.6 4.0 30 853-882 15-44 (223)
380 1zu4_A FTSY; GTPase, signal re 90.9 2.2 7.4E-05 47.8 13.9 36 851-886 104-142 (320)
381 1ls1_A Signal recognition part 90.9 0.61 2.1E-05 51.6 9.3 73 851-923 97-192 (295)
382 3thx_B DNA mismatch repair pro 90.8 0.52 1.8E-05 60.1 9.6 22 853-874 674-695 (918)
383 3gmt_A Adenylate kinase; ssgci 90.7 0.17 5.8E-06 54.3 4.4 31 853-883 9-39 (230)
384 1tf7_A KAIC; homohexamer, hexa 90.7 1 3.5E-05 53.6 11.7 74 851-924 280-384 (525)
385 3fe2_A Probable ATP-dependent 90.7 0.44 1.5E-05 50.3 7.6 55 813-870 28-84 (242)
386 1sky_E F1-ATPase, F1-ATP synth 90.6 0.2 6.8E-06 59.2 5.2 24 853-876 152-175 (473)
387 2v3c_C SRP54, signal recogniti 90.5 0.31 1.1E-05 57.0 6.8 36 851-886 98-136 (432)
388 3ber_A Probable ATP-dependent 90.4 0.56 1.9E-05 50.1 8.2 54 814-870 43-98 (249)
389 2ffh_A Protein (FFH); SRP54, s 90.4 1.2 4.1E-05 52.0 11.5 73 851-923 97-192 (425)
390 1tf7_A KAIC; homohexamer, hexa 90.1 1.3 4.4E-05 52.8 11.8 35 851-885 38-76 (525)
391 3ney_A 55 kDa erythrocyte memb 89.9 0.19 6.5E-06 52.6 3.9 25 853-877 20-44 (197)
392 4eaq_A DTMP kinase, thymidylat 89.8 0.22 7.5E-06 52.9 4.3 32 852-883 26-59 (229)
393 1njg_A DNA polymerase III subu 89.7 0.25 8.7E-06 50.4 4.6 41 570-613 124-164 (250)
394 3tbk_A RIG-I helicase domain; 89.6 1.1 3.9E-05 52.2 10.7 23 853-875 20-42 (555)
395 3lxx_A GTPase IMAP family memb 89.6 1.1 3.6E-05 47.2 9.4 23 853-875 30-52 (239)
396 1a7j_A Phosphoribulokinase; tr 89.3 0.13 4.6E-06 56.7 2.2 37 853-889 6-45 (290)
397 1htw_A HI0065; nucleotide-bind 89.2 0.26 8.8E-06 49.6 4.1 24 853-876 34-57 (158)
398 3ice_A Transcription terminati 89.1 0.73 2.5E-05 53.3 8.2 32 853-884 175-211 (422)
399 3p32_A Probable GTPase RV1496/ 89.1 0.84 2.9E-05 51.6 8.7 33 852-884 79-114 (355)
400 2oxc_A Probable ATP-dependent 89.1 0.98 3.4E-05 47.2 8.7 54 813-869 23-78 (230)
401 2gza_A Type IV secretion syste 89.1 0.38 1.3E-05 54.7 5.9 69 853-921 176-262 (361)
402 1z6g_A Guanylate kinase; struc 89.0 0.23 8E-06 52.1 3.8 24 853-876 24-47 (218)
403 3b9q_A Chloroplast SRP recepto 89.0 0.43 1.5E-05 53.0 6.1 26 851-876 99-124 (302)
404 1odf_A YGR205W, hypothetical 3 88.9 0.18 6E-06 55.8 2.9 27 851-877 30-56 (290)
405 1znw_A Guanylate kinase, GMP k 88.9 0.25 8.7E-06 51.1 3.9 25 853-877 21-45 (207)
406 2jeo_A Uridine-cytidine kinase 88.9 0.26 9E-06 52.4 4.2 27 853-879 26-52 (245)
407 3tqf_A HPR(Ser) kinase; transf 88.9 0.3 1E-05 50.5 4.3 28 852-880 16-43 (181)
408 1xti_A Probable ATP-dependent 88.8 2.7 9.4E-05 46.7 12.6 21 853-873 46-66 (391)
409 2zj8_A DNA helicase, putative 88.7 1.7 5.9E-05 53.5 11.8 34 852-885 39-76 (720)
410 2ged_A SR-beta, signal recogni 88.6 0.45 1.5E-05 47.7 5.4 26 851-876 47-72 (193)
411 1s96_A Guanylate kinase, GMP k 88.5 0.27 9.4E-06 52.0 3.9 27 851-877 15-41 (219)
412 1xjc_A MOBB protein homolog; s 88.5 0.48 1.6E-05 48.4 5.5 32 853-884 5-39 (169)
413 1s2m_A Putative ATP-dependent 88.5 1.6 5.5E-05 48.9 10.5 57 813-872 20-78 (400)
414 3lxw_A GTPase IMAP family memb 88.5 1.6 5.4E-05 46.6 9.9 24 851-874 20-43 (247)
415 3thx_A DNA mismatch repair pro 88.5 0.92 3.1E-05 58.0 9.3 21 853-873 663-683 (934)
416 2ocp_A DGK, deoxyguanosine kin 88.4 0.32 1.1E-05 51.5 4.4 26 853-878 3-29 (241)
417 1p5z_B DCK, deoxycytidine kina 88.3 0.13 4.5E-06 55.3 1.3 30 851-880 23-53 (263)
418 1m8p_A Sulfate adenylyltransfe 88.3 0.33 1.1E-05 58.8 4.8 36 852-887 396-435 (573)
419 1wp9_A ATP-dependent RNA helic 88.1 1.2 4.3E-05 50.3 9.3 33 854-886 25-61 (494)
420 1wb9_A DNA mismatch repair pro 88.1 2.1 7.1E-05 53.9 12.0 24 852-875 607-630 (800)
421 2fwr_A DNA repair protein RAD2 87.9 0.35 1.2E-05 56.1 4.7 33 854-886 110-142 (472)
422 4edh_A DTMP kinase, thymidylat 87.7 0.49 1.7E-05 49.9 5.2 33 853-885 7-42 (213)
423 2v9p_A Replication protein E1; 87.6 0.34 1.2E-05 54.1 4.1 27 851-877 125-151 (305)
424 2w58_A DNAI, primosome compone 87.5 0.47 1.6E-05 48.4 4.9 80 304-394 7-89 (202)
425 2va8_A SSO2462, SKI2-type heli 87.5 2.1 7.1E-05 52.7 11.4 20 852-871 46-65 (715)
426 3kta_A Chromosome segregation 87.5 0.31 1.1E-05 48.9 3.4 24 854-877 28-51 (182)
427 3k53_A Ferrous iron transport 87.4 0.71 2.4E-05 49.8 6.4 23 853-875 4-26 (271)
428 3oiy_A Reverse gyrase helicase 87.2 0.59 2E-05 53.2 5.9 20 853-872 37-56 (414)
429 3lnc_A Guanylate kinase, GMP k 87.2 0.22 7.4E-06 52.4 2.2 24 853-876 28-52 (231)
430 2gj8_A MNME, tRNA modification 87.2 0.85 2.9E-05 45.4 6.4 24 852-875 4-27 (172)
431 2j0s_A ATP-dependent RNA helic 87.0 2.9 9.8E-05 47.1 11.4 57 813-872 36-94 (410)
432 2og2_A Putative signal recogni 86.8 0.72 2.5E-05 52.6 6.3 26 851-876 156-181 (359)
433 3eiq_A Eukaryotic initiation f 86.8 1.1 3.8E-05 50.4 7.8 57 812-871 38-96 (414)
434 1rj9_A FTSY, signal recognitio 86.5 0.43 1.5E-05 53.1 4.1 25 852-876 102-126 (304)
435 2qby_A CDC6 homolog 1, cell di 86.5 3 0.0001 46.1 11.1 55 557-613 115-171 (386)
436 3h1t_A Type I site-specific re 86.4 0.98 3.3E-05 54.2 7.5 24 853-876 199-222 (590)
437 1g8p_A Magnesium-chelatase 38 86.3 2.5 8.6E-05 46.5 10.3 52 318-388 20-71 (350)
438 1sq5_A Pantothenate kinase; P- 86.2 0.38 1.3E-05 53.3 3.5 25 853-877 81-105 (308)
439 1bif_A 6-phosphofructo-2-kinas 86.1 0.25 8.6E-06 58.0 2.1 33 852-884 39-74 (469)
440 3aez_A Pantothenate kinase; tr 86.1 0.45 1.6E-05 53.1 4.1 26 851-876 89-114 (312)
441 2dyk_A GTP-binding protein; GT 85.9 0.45 1.5E-05 45.8 3.4 23 853-875 2-24 (161)
442 3n70_A Transport activator; si 85.9 0.53 1.8E-05 45.9 4.0 39 359-400 23-64 (145)
443 1upt_A ARL1, ADP-ribosylation 85.8 0.55 1.9E-05 45.6 4.1 25 851-875 6-30 (171)
444 1np6_A Molybdopterin-guanine d 85.8 0.44 1.5E-05 48.8 3.5 24 853-876 7-30 (174)
445 1nrj_B SR-beta, signal recogni 85.8 0.5 1.7E-05 48.5 3.9 25 852-876 12-36 (218)
446 2bjv_A PSP operon transcriptio 85.6 1 3.4E-05 48.1 6.3 64 318-398 2-68 (265)
447 3tqc_A Pantothenate kinase; bi 85.4 0.64 2.2E-05 52.2 4.8 27 851-877 91-117 (321)
448 2hf9_A Probable hydrogenase ni 85.4 0.84 2.9E-05 47.1 5.4 25 852-876 38-62 (226)
449 1zd9_A ADP-ribosylation factor 85.3 3 0.0001 41.7 9.4 23 853-875 23-45 (188)
450 2gk6_A Regulator of nonsense t 85.3 0.41 1.4E-05 58.4 3.5 23 854-876 197-219 (624)
451 2wsm_A Hydrogenase expression/ 85.3 0.57 2E-05 48.2 4.1 25 853-877 31-55 (221)
452 3v9p_A DTMP kinase, thymidylat 85.2 0.71 2.4E-05 49.3 4.9 32 853-884 26-64 (227)
453 3tif_A Uncharacterized ABC tra 85.1 0.43 1.5E-05 50.9 3.2 25 852-876 31-55 (235)
454 3fmp_B ATP-dependent RNA helic 85.1 0.95 3.3E-05 52.6 6.3 54 813-869 91-148 (479)
455 4i1u_A Dephospho-COA kinase; s 85.1 0.44 1.5E-05 50.4 3.2 30 854-884 11-40 (210)
456 2qm8_A GTPase/ATPase; G protei 85.0 1.5 5.3E-05 49.2 7.8 25 852-876 55-79 (337)
457 2cbz_A Multidrug resistance-as 85.0 0.44 1.5E-05 50.9 3.2 26 851-876 30-55 (237)
458 3tmk_A Thymidylate kinase; pho 84.8 1 3.4E-05 47.8 5.7 32 853-884 6-37 (216)
459 2v6i_A RNA helicase; membrane, 84.6 0.76 2.6E-05 53.3 5.2 33 853-885 3-39 (431)
460 3ly5_A ATP-dependent RNA helic 84.6 1.1 3.8E-05 48.1 6.2 18 853-870 92-109 (262)
461 1z2a_A RAS-related protein RAB 84.4 0.57 2E-05 45.3 3.5 23 853-875 6-28 (168)
462 2pcj_A ABC transporter, lipopr 84.4 0.41 1.4E-05 50.7 2.6 24 853-876 31-54 (224)
463 2onk_A Molybdate/tungstate ABC 84.3 0.54 1.9E-05 50.4 3.5 24 853-876 25-48 (240)
464 1u8z_A RAS-related protein RAL 84.3 0.55 1.9E-05 45.2 3.3 23 853-875 5-27 (168)
465 2f9l_A RAB11B, member RAS onco 84.2 0.54 1.8E-05 47.8 3.3 23 853-875 6-28 (199)
466 2lkc_A Translation initiation 84.2 0.75 2.6E-05 45.1 4.2 24 851-874 7-30 (178)
467 3iby_A Ferrous iron transport 84.2 1.2 4.2E-05 48.0 6.2 23 853-875 2-24 (256)
468 2p67_A LAO/AO transport system 84.2 2.4 8.1E-05 47.6 8.9 25 852-876 56-80 (341)
469 1g8f_A Sulfate adenylyltransfe 84.2 0.5 1.7E-05 56.4 3.4 26 853-878 396-421 (511)
470 1oix_A RAS-related protein RAB 84.0 0.52 1.8E-05 47.7 3.1 24 853-876 30-53 (191)
471 1mv5_A LMRA, multidrug resista 83.9 0.52 1.8E-05 50.5 3.1 26 851-876 27-52 (243)
472 2ce2_X GTPase HRAS; signaling 83.9 0.59 2E-05 44.7 3.3 24 853-876 4-27 (166)
473 1kao_A RAP2A; GTP-binding prot 83.9 0.62 2.1E-05 44.7 3.4 23 853-875 4-26 (167)
474 2f1r_A Molybdopterin-guanine d 83.9 0.44 1.5E-05 48.6 2.4 24 853-876 3-26 (171)
475 1ko7_A HPR kinase/phosphatase; 83.9 0.59 2E-05 52.4 3.6 30 851-881 143-172 (314)
476 3b85_A Phosphate starvation-in 83.8 0.39 1.3E-05 50.5 2.0 22 854-875 24-45 (208)
477 1lw7_A Transcriptional regulat 83.7 0.62 2.1E-05 52.7 3.8 27 853-879 171-197 (365)
478 4ag6_A VIRB4 ATPase, type IV s 83.6 0.98 3.4E-05 51.4 5.4 34 852-885 35-71 (392)
479 1ek0_A Protein (GTP-binding pr 83.5 0.66 2.3E-05 44.8 3.5 24 853-876 4-27 (170)
480 1w36_D RECD, exodeoxyribonucle 83.5 0.59 2E-05 56.8 3.7 24 853-876 165-188 (608)
481 1b0u_A Histidine permease; ABC 83.5 0.55 1.9E-05 51.0 3.1 25 853-877 33-57 (262)
482 4a2p_A RIG-I, retinoic acid in 83.4 2.8 9.7E-05 49.0 9.5 23 853-875 23-45 (556)
483 2wjg_A FEOB, ferrous iron tran 83.4 0.7 2.4E-05 45.9 3.7 23 853-875 8-30 (188)
484 1sgw_A Putative ABC transporte 83.4 0.48 1.6E-05 50.0 2.6 24 853-876 36-59 (214)
485 1ky3_A GTP-binding protein YPT 83.3 0.63 2.2E-05 45.6 3.2 24 852-875 8-31 (182)
486 3cr8_A Sulfate adenylyltranfer 83.2 0.53 1.8E-05 56.8 3.1 36 852-887 369-408 (552)
487 2zu0_C Probable ATP-dependent 83.2 0.67 2.3E-05 50.5 3.7 23 853-875 47-69 (267)
488 2ghi_A Transport protein; mult 83.2 0.58 2E-05 50.8 3.2 26 851-876 45-70 (260)
489 2d2e_A SUFC protein; ABC-ATPas 83.1 0.62 2.1E-05 50.1 3.3 23 853-875 30-52 (250)
490 1z0j_A RAB-22, RAS-related pro 83.0 0.71 2.4E-05 44.7 3.4 24 853-876 7-30 (170)
491 2nzj_A GTP-binding protein REM 82.9 0.66 2.3E-05 45.2 3.2 22 853-874 5-26 (175)
492 1wms_A RAB-9, RAB9, RAS-relate 82.8 0.72 2.5E-05 45.2 3.4 23 853-875 8-30 (177)
493 2pze_A Cystic fibrosis transme 82.8 0.56 1.9E-05 49.8 2.8 24 853-876 35-58 (229)
494 2ixe_A Antigen peptide transpo 82.8 0.61 2.1E-05 50.9 3.2 26 851-876 44-69 (271)
495 3sop_A Neuronal-specific septi 82.8 0.67 2.3E-05 50.6 3.5 23 854-876 4-26 (270)
496 1ji0_A ABC transporter; ATP bi 82.7 0.53 1.8E-05 50.4 2.6 24 853-876 33-56 (240)
497 3lv8_A DTMP kinase, thymidylat 82.7 0.65 2.2E-05 49.8 3.3 32 853-884 28-63 (236)
498 3l9o_A ATP-dependent RNA helic 82.7 2.2 7.6E-05 55.5 8.8 33 853-885 200-235 (1108)
499 1g6h_A High-affinity branched- 82.6 0.57 1.9E-05 50.7 2.8 24 853-876 34-57 (257)
500 1g16_A RAS-related protein SEC 82.6 0.72 2.4E-05 44.7 3.3 23 853-875 4-26 (170)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.1e-64 Score=627.05 Aligned_cols=546 Identities=27% Similarity=0.421 Sum_probs=386.0
Q ss_pred cccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001227 317 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 396 (1119)
Q Consensus 317 ~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~ 396 (1119)
-+|+|+..--+ ++.|..|.+.....|+|++. |.+-=-...+.|||.||||| ...+||||+|+++++.++.+|.+
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~--f~~~g~~~p~GILL~GPPGT--GKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPAL--FKAIGVKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGG--GTSCCCCCCCEEEEECCTTS--CHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCChhhhcCH--HHHHHHHHHHHHHHccCHHH--HhhcCCCCCCeEEEECCCCC--CHHHHHHHHHHHhCCeEEEEEhH
Confidence 36899998888 99999999999889999987 43322345588999999999 79999999999999999998865
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceeee
Q 001227 397 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 476 (1119)
Q Consensus 397 ~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~ 476 (1119)
++.+.+.
T Consensus 273 ~l~sk~~------------------------------------------------------------------------- 279 (806)
T 3cf2_A 273 EIMSKLA------------------------------------------------------------------------- 279 (806)
T ss_dssp HHHSSCT-------------------------------------------------------------------------
T ss_pred Hhhcccc-------------------------------------------------------------------------
Confidence 4433211
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhhHH
Q 001227 477 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 556 (1119)
Q Consensus 477 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k~ 556 (1119)
.+...
T Consensus 280 ---------------------------------------------------------------------------gese~ 284 (806)
T 3cf2_A 280 ---------------------------------------------------------------------------GESES 284 (806)
T ss_dssp ---------------------------------------------------------------------------THHHH
T ss_pred ---------------------------------------------------------------------------hHHHH
Confidence 11223
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc----C----hhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCCCC
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGG 626 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~~----~----~~~~~~l~~~L~~L~--g~vvvIgs~~~~d~~k~k~~~~~ 626 (1119)
.+..+|+.+.. .+|.||||||+|.++.. + .++.+.|...++.+. ++|+|||+||
T Consensus 285 ~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN------------- 348 (806)
T 3cf2_A 285 NLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN------------- 348 (806)
T ss_dssp HHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS-------------
T ss_pred HHHHHHHHHHH---cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC-------------
Confidence 45667777765 89999999999996542 1 234455556666663 5899999999
Q ss_pred ceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccch
Q 001227 627 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 704 (1119)
Q Consensus 627 ~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~I 704 (1119)
.||.+|+ ||+| ||++++++++||..+|.+|
T Consensus 349 -----------------~~d~LD~-------------------------------ALrR~GRFd~~I~i~~Pd~~~R~~I 380 (806)
T 3cf2_A 349 -----------------RPNSIDP-------------------------------ALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp -----------------STTTSCT-------------------------------TTTSTTSSCEEEECCCCCHHHHHHH
T ss_pred -----------------ChhhcCH-------------------------------HHhCCcccceEEecCCCCHHHHHHH
Confidence 5666776 8988 9999999999999999999
Q ss_pred hHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCC-CCcc-cccccchhhhHHHHHhhhhh
Q 001227 705 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKL-KISTESIMYGLNILQGIQSE 781 (1119)
Q Consensus 705 l~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~-~~kl-~id~~si~~~~~df~~a~~e 781 (1119)
+++|+. ...+ +++++..||..|.||+|+||+.||+.|+..|+.|..+.+.. .... .-..+++.+...||..++.+
T Consensus 381 L~~~l~--~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~ 458 (806)
T 3cf2_A 381 LQIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458 (806)
T ss_dssp HHHTCS--SSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSS
T ss_pred HHHHhc--CCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHh
Confidence 999975 2222 78899999999999999999999999999999886554322 1111 11123456667788877776
Q ss_pred hhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCC
Q 001227 782 SKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 861 (1119)
Q Consensus 782 ik~~~~slk~iv~~~e~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPp 861 (1119)
++|... . .. ....+.++|++|+|++++++.|.+.+.+|+.+|+.|.+.+ ..|++|+||||||
T Consensus 459 ~~ps~~--r--------------~~-~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPP 520 (806)
T 3cf2_A 459 SNPSAL--R--------------ET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPP 520 (806)
T ss_dssp SSCCCC--C--------------CC-CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESST
T ss_pred CCCccc--c--------------cc-cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEecCC
Confidence 665321 0 01 1122368999999999999999999999999999999888 4567999999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHH
Q 001227 862 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKM 939 (1119)
Q Consensus 862 GTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~l 939 (1119)
|||||++|+++|++++.+|+.+++++++++|+|++++.++.+|..|++.+||||||||||.|++.|... ......+++
T Consensus 521 GtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv 600 (806)
T 3cf2_A 521 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600 (806)
T ss_dssp TSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHH
T ss_pred CCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887542 334567789
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHH
Q 001227 940 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANM 1017 (1119)
Q Consensus 940 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~ 1017 (1119)
+++|+..|+++... .+|+||||||+|+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++|++.||+.
T Consensus 601 ~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~ 678 (806)
T 3cf2_A 601 INQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678 (806)
T ss_dssp HHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------
T ss_pred HHHHHHHHhCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHh
Confidence 99999999998654 679999999999999999999 99999999999999999999999999888899999999999
Q ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhh
Q 001227 1018 ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL 1097 (1119)
Q Consensus 1018 TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~ 1097 (1119)
|+||||+||.++|++|++.|+++.++............ ............++|+++||.+|+++++||++.+ ....+
T Consensus 679 t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~--~l~~y 755 (806)
T 3cf2_A 679 TNGFSGADLTEICQRACKLAIRESIESEIRRERERQTN-PSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKY 755 (806)
T ss_dssp -------CHHHHHHHHHHHHHHHHHC------------------------CCC----CCTTTC-----------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC-ccccccccccccCccCHHHHHHHHHhCCCCCCHH--HHHHH
Confidence 99999999999999999999999876543211100000 0000111223456899999999999999999876 34556
Q ss_pred hHHHHHhc
Q 001227 1098 LQWNELYG 1105 (1119)
Q Consensus 1098 v~W~DigG 1105 (1119)
.+|...++
T Consensus 756 ~~~~~~f~ 763 (806)
T 3cf2_A 756 EMFAQTLQ 763 (806)
T ss_dssp CCCC----
T ss_pred HHHHHHHh
Confidence 66665554
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-42 Score=393.02 Aligned_cols=247 Identities=34% Similarity=0.591 Sum_probs=227.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
+.++|+||+|+++++++|++.+.+|+.+|++|.+.++ .|++|+|||||||||||+||+|+|++++++|+.++++++.++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 4789999999999999999999999999999999884 567999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 969 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 969 (1119)
|.|++++.++.+|..|+..+||||||||||.+++.|... +......+++++|+..|+++... .+|+||||||+|+.
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLDI 299 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSSS
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCChhh
Confidence 999999999999999999999999999999999877543 33445677889999999998643 67999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001227 970 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1047 (1119)
Q Consensus 970 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~ 1047 (1119)
||++++| ||++.|+|++|+.++|.+||+.++++..+..++|++.||..|+||+|+||.++|++|++.|+++
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~------- 372 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE------- 372 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT-------
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc-------
Confidence 9999999 9999999999999999999999999999889999999999999999999999999999998874
Q ss_pred HHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcccc
Q 001227 1048 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1087 (1119)
Q Consensus 1048 e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~ 1087 (1119)
....|+++||..|++++.+..
T Consensus 373 -------------------~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 373 -------------------RRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp -------------------TCSBCCHHHHHHHHHHHHHHH
T ss_pred -------------------CCCCcCHHHHHHHHHHHhCcc
Confidence 124699999999999987654
No 3
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=7.4e-44 Score=446.07 Aligned_cols=544 Identities=28% Similarity=0.428 Sum_probs=373.3
Q ss_pred ccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccC
Q 001227 318 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 397 (1119)
Q Consensus 318 ~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~ 397 (1119)
.|+|++.--+ +..+..|.+.....++|+++. .+---.....|||.||+|| -..+||||||+..+..++.++...
T Consensus 200 ~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~--~~l~i~~~~~vLL~Gp~Gt--GKTtLarala~~l~~~~i~v~~~~ 273 (806)
T 1ypw_A 200 EVGYDDVGGC--RKQLAQIKEMVELPLRHPALF--KAIGVKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp SCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGG--TSSCCCCCCEEEECSCTTS--SHHHHHHHHHHTTTCEEEEEEHHH
T ss_pred CCCHHHhCCh--HHHHHHHHHHHHHHhhCHHHH--HhcCCCCCCeEEEECcCCC--CHHHHHHHHHHHcCCcEEEEEchH
Confidence 5889988777 888888888888889998763 2211345678999999999 799999999999998887777533
Q ss_pred CCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceeeec
Q 001227 398 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 477 (1119)
Q Consensus 398 ~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~g 477 (1119)
+.+.+..+
T Consensus 274 l~~~~~g~------------------------------------------------------------------------ 281 (806)
T 1ypw_A 274 IMSKLAGE------------------------------------------------------------------------ 281 (806)
T ss_dssp HSSSSTTH------------------------------------------------------------------------
T ss_pred hhhhhhhh------------------------------------------------------------------------
Confidence 32211100
Q ss_pred cCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhhHHH
Q 001227 478 NVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLA 557 (1119)
Q Consensus 478 ~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~ 557 (1119)
....
T Consensus 282 ----------------------------------------------------------------------------~~~~ 285 (806)
T 1ypw_A 282 ----------------------------------------------------------------------------SESN 285 (806)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 0112
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc----C----hhhHHHHHHHHhcC--CCCEEEEeeccCCCcccccCCCCCc
Q 001227 558 INELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGL 627 (1119)
Q Consensus 558 ~~~l~ev~~~esk~~p~Ilf~~die~~l~~----~----~~~~~~l~~~L~~L--~g~vvvIgs~~~~d~~k~k~~~~~~ 627 (1119)
+..+|+-+.. ..|.||||||++.++.. . .++.+.+...++.+ ..+|+||+++|
T Consensus 286 l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn-------------- 348 (806)
T 1ypw_A 286 LRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN-------------- 348 (806)
T ss_dssp HHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECS--------------
T ss_pred HHHHHHHHHh---cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccC--------------
Confidence 3344444444 57899999999986542 1 22334444555544 34899999999
Q ss_pred eeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccchh
Q 001227 628 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 705 (1119)
Q Consensus 628 ~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~Il 705 (1119)
.|+.+++ +++| ||++++++++|+...|.+|+
T Consensus 349 ----------------~~~~ld~-------------------------------al~r~gRf~~~i~i~~p~~~~r~~il 381 (806)
T 1ypw_A 349 ----------------RPNSIDP-------------------------------ALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp ----------------CTTTSCT-------------------------------TTTSTTSSCEEECCCCCCHHHHHHHH
T ss_pred ----------------CchhcCH-------------------------------HHhcccccccccccCCCCHHHHHHHH
Confidence 4455554 4444 66666777777777777777
Q ss_pred HHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCccccc---ccchhhhHHHHHhhhhh
Q 001227 706 SIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKIS---TESIMYGLNILQGIQSE 781 (1119)
Q Consensus 706 ~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id---~~si~~~~~df~~a~~e 781 (1119)
+.|+. ...+ .+.++..++..+.+|+++++..+|..|+..++.+....+.... ..++ ...+.+...+|..+...
T Consensus 382 ~~~~~--~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~-~~~~~~~~~~~~v~~~d~~~al~~ 458 (806)
T 1ypw_A 382 QIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVMNSLAVTMDDFRWALSQ 458 (806)
T ss_dssp HHTTT--TSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH-HHCCHHHHTTCCCCTTHHHHHHHH
T ss_pred HHHHh--cCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh-hccchhhhhhhhhhhhhhhccccc
Confidence 77642 2233 6678999999999999999999999999988876543221100 0000 01111222233222211
Q ss_pred hhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCC
Q 001227 782 SKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 861 (1119)
Q Consensus 782 ik~~~~slk~iv~~~e~~k~ll~~vip~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPp 861 (1119)
..+.. .... ....+.++|++++|++++++.|.+.+.+|+.+++.|...++ .++.++||+|||
T Consensus 459 ~~~s~----------------~~~~-~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gpp 520 (806)
T 1ypw_A 459 SNPSA----------------LRET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPP 520 (806)
T ss_dssp SCCCC----------------CCCC-CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC-CCCCCCCCBCCT
T ss_pred cCchh----------------hhhh-cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCC-CCCceeEEECCC
Confidence 11100 0001 11223678999999999999999999999999998887764 456889999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHH
Q 001227 862 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKM 939 (1119)
Q Consensus 862 GTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~l 939 (1119)
|||||+||+++|.+++.+++.++++++.+.|+|+.+..++.+|..|+...|+||||||||.++..+... .......++
T Consensus 521 GtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v 600 (806)
T 1ypw_A 521 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600 (806)
T ss_dssp TSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998777543 234567889
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHH
Q 001227 940 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANM 1017 (1119)
Q Consensus 940 l~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~ 1017 (1119)
+++|+..++++... .+++||+|||+++.||++++| ||+..+++++|+.++|.+||+.++++..+..+.+++.|+..
T Consensus 601 ~~~LL~~ld~~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~ 678 (806)
T 1ypw_A 601 INQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678 (806)
T ss_dssp HHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGG
T ss_pred HHHHHHHHhccccc--CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHh
Confidence 99999999987543 679999999999999999999 99999999999999999999999988888888899999999
Q ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhh
Q 001227 1018 ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL 1097 (1119)
Q Consensus 1018 TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~ 1097 (1119)
++||+++||.++|+.|+..|+++.++.......... ..............++|+++||..|++.++|+++.+ ....+
T Consensus 679 t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~~y 755 (806)
T 1ypw_A 679 TNGFSGADLTEICQRACKLAIRESIESEIRRERERQ-TNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKY 755 (806)
T ss_dssp GSSSCCHHHHHHHHHHHHHHHSCC-------------------------CCTTTTTTSSCCCCCC---------------
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-ccccccccccccccCccCHHHHHHHHHhCCCCCCHH--HHHHH
Confidence 999999999999999999999986654221110000 000000011123356899999999999999998776 45677
Q ss_pred hHHHHHhc
Q 001227 1098 LQWNELYG 1105 (1119)
Q Consensus 1098 v~W~DigG 1105 (1119)
.+|...++
T Consensus 756 e~~~~~~~ 763 (806)
T 1ypw_A 756 EMFAQTLQ 763 (806)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 88877654
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-40 Score=387.12 Aligned_cols=261 Identities=32% Similarity=0.569 Sum_probs=228.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+.++|+||+|+++++++|++.+.+|+.+|++|.+.++ .|++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 34789999999999999999999999999999998884 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
+|+|++++.++.+|..|+..+||||||||+|.++..|... +......+++++++..|++.... .+|+||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTT
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCcc
Confidence 9999999999999999999999999999999999887543 33445667888999999987543 6799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..+++++.||..|+||+|+||.++|++|++.|+++.
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~----- 434 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR----- 434 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999999 99999999999999999999999999988899999999999999999999999999999998751
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHH
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1101 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~ 1101 (1119)
...++++||..|++++.++...- .....+.+||
T Consensus 435 ---------------------~~~it~~Df~~Al~kV~~g~~k~-s~~~~y~~~n 467 (467)
T 4b4t_H 435 ---------------------RKVATEKDFLKAVDKVISGYKKF-SSTSRYMQYN 467 (467)
T ss_dssp ---------------------CSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred ---------------------CCccCHHHHHHHHHHHhcCcccc-hhHHHHHhhC
Confidence 24689999999999998765432 2234567775
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-41 Score=387.18 Aligned_cols=251 Identities=35% Similarity=0.620 Sum_probs=228.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+.++|+||+|+++++++|++.+.+|+.+|+.|.+.++ .|++|||||||||||||+||+|+|++++++|+.++++++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 34789999999999999999999999999999998885 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
+|+|++++.++.+|..|+..+||||||||||.+++.|.... ......+++.+|+..++++... .+++||||||+++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCST
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCChh
Confidence 99999999999999999999999999999999998875432 2334567788899999987543 6799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++|++.||..|+||+|+||.++|++|++.|+++
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~------ 406 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE------ 406 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999999 9999999999999999999999999998889999999999999999999999999999998875
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccc
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1090 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e 1090 (1119)
....|+++||..|++++.++...+
T Consensus 407 --------------------~~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 407 --------------------RRMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp --------------------TCSCBCHHHHHHHHHHHHHHHCCC
T ss_pred --------------------CCCccCHHHHHHHHHHHhCCCChh
Confidence 124699999999999998876544
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-40 Score=386.71 Aligned_cols=251 Identities=32% Similarity=0.561 Sum_probs=229.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+.++|+||+|+++++++|++.+.+|+.+|+.|.+.++ .|++|||||||||||||++|+|+|++++++|+.++++++.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45789999999999999999999999999999999885 56799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
+|.|++++.++.+|..|+..+||||||||||.+++.|.... ......+++.+|+..++++... .+|+||||||+|+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRVD 331 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCch
Confidence 99999999999999999999999999999999998875432 2345567888999999998654 6799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..+++++.||..|+||+|+||.++|++|++.|+++.
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~----- 406 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG----- 406 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999999 99999999999999999999999999988899999999999999999999999999999988751
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccc
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1090 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e 1090 (1119)
...|+++||..|+++++|+.++.
T Consensus 407 ---------------------~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 407 ---------------------QSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ---------------------CSSBCHHHHHHHHHSCSSSCCCC
T ss_pred ---------------------CCCcCHHHHHHHHHHHhCCCCcC
Confidence 24699999999999999875443
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-40 Score=384.69 Aligned_cols=250 Identities=37% Similarity=0.645 Sum_probs=227.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+.++|+||+|+++++++|++.+.+|+.+|++|.+.++ .|++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 34789999999999999999999999999999999885 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
+|.|++++.++.+|..|+...||||||||||.+++.|...+ ......+++++|+..|+++... .+++||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCch
Confidence 99999999999999999999999999999999998875432 2345567888999999998653 6799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++|++.||..|+||+|+||.++|++|+..|+++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~------ 405 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD------ 405 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 6999999999999999999999999988888999999999999999999999999999998874
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcccccc
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1089 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~ 1089 (1119)
....|+++||..|++++.++...
T Consensus 406 --------------------~~~~i~~~d~~~Al~~v~~~~k~ 428 (437)
T 4b4t_L 406 --------------------DRDHINPDDLMKAVRKVAEVKKL 428 (437)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHTCC-
T ss_pred --------------------CCCCCCHHHHHHHHHHHHhccCc
Confidence 12469999999999999887543
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-39 Score=372.22 Aligned_cols=247 Identities=35% Similarity=0.566 Sum_probs=224.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+.++|+||+|+++++++|.+.+.+|+.+|+.|.+.|+ .|++|+|||||||||||++|+|+|++++++|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 34789999999999999999999999999999999885 56799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
+|+|+++..++.+|..|+..+||||||||+|.+++.|... .......+++++|+..++++... .+++||||||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSS
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChh
Confidence 9999999999999999999999999999999999887432 23345677889999999998654 6799999999999
Q ss_pred CCcHHHHh--ccccccccC-CCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVN-LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1045 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~-lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~ 1045 (1119)
.||++++| ||++.|+|+ +|+.++|..||+.++++..+..++|++.||..|+||+|+||.++|++|++.|+++
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~----- 397 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK----- 397 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
Confidence 99999999 999999995 8999999999999999998889999999999999999999999999999998875
Q ss_pred HHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHh-ccc
Q 001227 1046 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV-CAS 1086 (1119)
Q Consensus 1046 ~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv-~pS 1086 (1119)
....|+++||.+|+.++ +++
T Consensus 398 ---------------------~~~~i~~~d~~~A~~~~~~~~ 418 (428)
T 4b4t_K 398 ---------------------NRYVILQSDLEEAYATQVKTD 418 (428)
T ss_dssp ---------------------TCSSBCHHHHHHHHHHHSCSC
T ss_pred ---------------------CCCCCCHHHHHHHHHHhhCcc
Confidence 12469999999999875 444
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.5e-39 Score=399.68 Aligned_cols=287 Identities=37% Similarity=0.585 Sum_probs=253.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
+.++|+||+|+++++++|++.+.+|+.+|++|.+.++ .||+|||||||||||||+||+++|++++.+|+.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~-~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC-CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 3689999999999999999999999999999998884 577999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 971 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 971 (1119)
|.|++++.++.+|..|++.+|+||||||||.|++.+.... .+..++++++|+..|+++... .+|+||+|||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999998876533 334577889999999998653 6799999999999999
Q ss_pred HHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001227 972 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1049 (1119)
Q Consensus 972 ~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~ 1049 (1119)
++++| ||++.|++++|+.++|.+||+.++++..+..++++..||..|+||+++||.+||++|++.++++..+....
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~-- 432 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL-- 432 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc--
Confidence 99999 99999999999999999999999999888899999999999999999999999999999999986532211
Q ss_pred HHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCCCccc
Q 001227 1050 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1111 (1119)
Q Consensus 1050 ~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~~RK 1111 (1119)
..........+...++++||..|++.++|+..++.....|.+.|+|++|++.+|+
T Consensus 433 -------~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~ 487 (806)
T 3cf2_A 433 -------EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp -------TCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHH
T ss_pred -------cccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHH
Confidence 0000000011234689999999999999999999888899999999999988875
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=332.24 Aligned_cols=291 Identities=36% Similarity=0.641 Sum_probs=242.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCcccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 890 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-g~~fi~V~~s~L~s 890 (1119)
+.++|+||+|++++++.|.+.+.+|+.++++|... ..|++++||+||||||||++|+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC--CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 36799999999999999999999999999998742 4677999999999999999999999999 89999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 970 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 970 (1119)
.+.|..++.++.+|..|+..+|+||||||||.+.+.+... ......+++++++..++++.. ...+++||+|||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999998776543 345567888999999998753 23689999999999999
Q ss_pred cHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001227 971 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1049 (1119)
Q Consensus 971 d~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~ 1049 (1119)
+++++|||+..+++++|+.++|.+|++.++...... ++.+++.|+..++||+|+||.+||++|+..++++.+.......
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999876553 7889999999999999999999999999999998643210000
Q ss_pred HHHHh--------hccCCCCC---------------CCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcC
Q 001227 1050 ALALA--------ENRASPPL---------------YSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1106 (1119)
Q Consensus 1050 ~~a~~--------~~~~~~~~---------------~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~ 1106 (1119)
..... .....+.. ......++|+++||..|+++++||++.+ .+..+.+|++.||.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 243 VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHHHTTCS
T ss_pred hccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHHcc
Confidence 00000 00000000 0011235899999999999999999876 46788999999998
Q ss_pred CC
Q 001227 1107 GG 1108 (1119)
Q Consensus 1107 ~~ 1108 (1119)
+|
T Consensus 321 ~~ 322 (322)
T 1xwi_A 321 EG 322 (322)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=9.4e-35 Score=326.95 Aligned_cols=292 Identities=37% Similarity=0.642 Sum_probs=236.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
+.++|++|+|++.+++.|.+.+..|+.+++.|... ..|++++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 46789999999999999999999999999998764 4677899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 971 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 971 (1119)
+.|..+..++.+|..|+...|+||||||||.|.+.+.. .......++.++++..++++... ..+++||+|||.++.|+
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGGSC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhhCC
Confidence 99999999999999999999999999999999876543 22334566778888888876432 36799999999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001227 972 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1050 (1119)
Q Consensus 972 ~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~ 1050 (1119)
+++++||+..+++++|+.++|.+||+.++.+.... .+.+++.|+..++||+++||.++|+.|+..++++..+.......
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999886644 77889999999999999999999999999999987432100000
Q ss_pred HH-Hhh-ccCCCCC---------------CCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCCCc
Q 001227 1051 LA-LAE-NRASPPL---------------YSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 1109 (1119)
Q Consensus 1051 ~a-~~~-~~~~~~~---------------~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~~ 1109 (1119)
.. ... ....+.. ......++|+++||..|++.++||++.+ ....+.+|+..||.+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~~~~ 322 (322)
T 3eie_A 249 STEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED--DLLKQEQFTRDFGQEGN 322 (322)
T ss_dssp C----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTT--HHHHHHHHHHHHC----
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhcCCCC
Confidence 00 000 0000000 0111236899999999999999999876 56788999999998773
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.4e-34 Score=327.32 Aligned_cols=294 Identities=37% Similarity=0.634 Sum_probs=231.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001227 810 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 889 (1119)
Q Consensus 810 ~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~ 889 (1119)
..+..+|++|+|++.+++.|.+.+..|+.++++|... ..++++|||+||||||||++|+++|++++.+|+.++++++.
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 3446899999999999999999999999999999763 46778999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001227 890 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 969 (1119)
Q Consensus 890 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 969 (1119)
+.+.|..+..++.+|..|+...|+||||||||.|.+.+.. .......++.++|+..++++... ..+++||+|||.++.
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQ 199 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCccc
Confidence 9999999999999999999999999999999999866543 23445677888888888876432 367999999999999
Q ss_pred CcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001227 970 LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1048 (1119)
Q Consensus 970 Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l-~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e 1048 (1119)
++++++|||+..+++++|+.++|.+||+.++..... .++.+++.|+..++||+++||.++|+.|+..++++........
T Consensus 200 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~ 279 (355)
T 2qp9_X 200 LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFK 279 (355)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999988654 3688899999999999999999999999999999864321000
Q ss_pred H--HHHHhhccCCCC---------------CCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCCCc
Q 001227 1049 R--ALALAENRASPP---------------LYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 1109 (1119)
Q Consensus 1049 ~--~~a~~~~~~~~~---------------~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~~ 1109 (1119)
. ..........+. .......++|+++||..|+++++||++.+ .+..+..|+..||.+|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~--~~~~~~~~~~~~~~~~~ 355 (355)
T 2qp9_X 280 DVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED--DLLKQEQFTRDFGQEGN 355 (355)
T ss_dssp ECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHH--HHHHHHHHHHHTC----
T ss_pred hhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhccCCC
Confidence 0 000000000000 00111246799999999999999999876 46688999999998763
No 13
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.6e-33 Score=329.24 Aligned_cols=294 Identities=37% Similarity=0.635 Sum_probs=232.9
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCc
Q 001227 809 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSS 887 (1119)
Q Consensus 809 ~~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-g~~fi~V~~s~ 887 (1119)
...+.++|++|+|++.+++.|.+.+.+|+.++++|... ..|++++||+||||||||+||+++|+++ +.+|+.+++++
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 34457899999999999999999999999999988743 4577899999999999999999999999 89999999999
Q ss_pred cccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 001227 888 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 967 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p 967 (1119)
+.+.+.|..+..++.+|..++...|+||||||||.|++.+... ......+++++|+..++++.. ...+++||+|||.+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn~~ 281 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIP 281 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEESCG
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCccc-CCCCEEEEecCCCc
Confidence 9999999998999999999999999999999999998766543 334556788899999988753 23679999999999
Q ss_pred CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 968 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 968 ~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l-~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
+.++++++|||+..+.+++|+.++|..||+.++..... .++.+++.|+..++||+|+||.++|+.|+..++++.+....
T Consensus 282 ~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~ 361 (444)
T 2zan_A 282 WVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 361 (444)
T ss_dssp GGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSE
T ss_pred cccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999987654 36789999999999999999999999999999998753210
Q ss_pred HHHHHHHh--------hccCCC--------------CC-CCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHH
Q 001227 1047 KERALALA--------ENRASP--------------PL-YSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNEL 1103 (1119)
Q Consensus 1047 ~e~~~a~~--------~~~~~~--------------~~-~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~Di 1103 (1119)
........ .....+ .. ......++|+++||..|+++++||++.+ .+..+.+|+..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~--~~~~~~~~~~~ 439 (444)
T 2zan_A 362 FKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQ--DLLKLKKFTED 439 (444)
T ss_dssp EEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHH--HHHHHHHHTSS
T ss_pred hhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHH
Confidence 00000000 000000 00 0011235899999999999999999876 46788999999
Q ss_pred hcCCC
Q 001227 1104 YGEGG 1108 (1119)
Q Consensus 1104 gG~~~ 1108 (1119)
||.+|
T Consensus 440 ~~~~~ 444 (444)
T 2zan_A 440 FGQEG 444 (444)
T ss_dssp CTTTC
T ss_pred HcCCC
Confidence 99765
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.2e-33 Score=315.31 Aligned_cols=287 Identities=38% Similarity=0.610 Sum_probs=232.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
+.++|++|+|++.+++.|.+.+..|+.+|+.|...++ .+++++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 3678999999999999999999999999999988774 466899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 969 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 969 (1119)
++|..+..++.+|..|....|+||||||||.+...+.... ......+++++++..++++.. ..+++||+|||.++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 166 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccc
Confidence 9999999999999999999999999999999976543210 011223456677777777643 367999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001227 970 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1047 (1119)
Q Consensus 970 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~ 1047 (1119)
++++++| ||+..+++++|+.++|.+|++.++.+..+..+++++.++..+.||+|+||.++|+.|+..++++.+.....
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~ 246 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 246 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999 99999999999999999999999998887788899999999999999999999999999999987654321
Q ss_pred HHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHh
Q 001227 1048 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 1104 (1119)
Q Consensus 1048 e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~Dig 1104 (1119)
........... ..........+|+++||..|+++++||++.+ ....+..|+..|
T Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~--~~~~~~~~~~~~ 300 (301)
T 3cf0_A 247 RERERQTNPSA-MEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTL 300 (301)
T ss_dssp --------------------CCCBCHHHHHHHHTTCCCSSCHH--HHHHHHHHHHHH
T ss_pred hhhhccccccc-ccccccccCCccCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHh
Confidence 11000000000 0000112346899999999999999998765 456788998765
No 15
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.8e-33 Score=332.55 Aligned_cols=280 Identities=38% Similarity=0.613 Sum_probs=229.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
..+|++|+|++..++.|.+.+..++.+++.|...+. .++.++||+||||||||++|++||++++.+|+.++|+++.+.+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 357999999999999999999999999999998774 4568999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 972 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 972 (1119)
+|+.+..++.+|..|....|+||||||||.|.+.+... ..+...++.+.|+..+++... ..+++||+|||+++.|++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCH
Confidence 99999999999999999999999999999998776532 234556778888888887643 367999999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001227 973 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1050 (1119)
Q Consensus 973 aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~ 1050 (1119)
++++ ||+..+++++|+.++|.+||+.++....+..+.++..++..+.||+++||.+||+.|+..++++..+...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~---- 431 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID---- 431 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCC----
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccc----
Confidence 9999 9999999999999999999999999888888889999999999999999999999999998886422100
Q ss_pred HHHhhccCCCCCCC--CCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCC
Q 001227 1051 LALAENRASPPLYS--SVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1107 (1119)
Q Consensus 1051 ~a~~~~~~~~~~~~--~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~ 1107 (1119)
....... ......++++||..|+++++|+..++.....|.++|+||||..
T Consensus 432 -------~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 432 -------LEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp -------TTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred -------ccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 0000000 0123479999999999999999999999899999999999953
No 16
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=310.02 Aligned_cols=276 Identities=44% Similarity=0.781 Sum_probs=231.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
..+|++|+|++.+++.|.+.+..|+.+++.|... ..+++++||+||||||||++|+++|++++.+|+.++++++...+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL--RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc--cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 5789999999999999999999999999888654 35678999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 972 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 972 (1119)
.|..+..++.+|..+....|+||||||||.|...+.. +.+....+++++++..+++.......+++||+|||.++.+++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~ 236 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE 236 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCH
Confidence 9999999999999999999999999999999876543 234456678888888888876555578999999999999999
Q ss_pred HHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001227 973 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERAL 1051 (1119)
Q Consensus 973 aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~ 1051 (1119)
++++||...+++++|+.++|.++++.++...... .+.+++.|+..++||+++||..||+.|+..+++++......
T Consensus 237 ~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~---- 312 (357)
T 3d8b_A 237 AARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA---- 312 (357)
T ss_dssp HHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--------
T ss_pred HHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc----
Confidence 9999999999999999999999999998875443 57789999999999999999999999999998864221110
Q ss_pred HHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCC
Q 001227 1052 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1107 (1119)
Q Consensus 1052 a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~ 1107 (1119)
.....+.++|+++||..|+++++|+...+ ....++.|++.||.+
T Consensus 313 ----------~~~~~~~~~i~~~d~~~al~~~~ps~~~~--~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 313 ----------TITPDQVRPIAYIDFENAFRTVRPSVSPK--DLELYENWNKTFGCG 356 (357)
T ss_dssp ----------------CCCBCHHHHHHHHHHHGGGCCCC--CHHHHHHHHHHHSCC
T ss_pred ----------cccccccCCcCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhCCC
Confidence 01123457899999999999999998776 466789999999975
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.98 E-value=3.7e-32 Score=300.28 Aligned_cols=259 Identities=38% Similarity=0.634 Sum_probs=208.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
.++|+||+|+++++++|.+.+.+|+.+++.|...++. +++|++|+||||||||+|+++||.+++.+++.+++.++...+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~-~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLV-TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC-CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 5789999999999999999999999999999988754 557899999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 972 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 972 (1119)
.++.++.+..+|+.+....|+|+|+||+|.++..+... ......+++++++..+++... ...++++++||+|+.||+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCH
Confidence 88889999999999988899999999999987654321 122334567888888888743 367899999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhh---cccCChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhHHHHHHHH
Q 001227 973 AVVR--RLPRRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIREILEKE 1045 (1119)
Q Consensus 973 aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k---~~l~~d~dl~~LA~~T--eGysg~DL~~L~~~Aa~~airrlle~~ 1045 (1119)
+++| ||++.|++++|+.++|.+||+.+++. ..+..+++++.+|..+ +||+|+||.++|++|+..++++.+...
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~ 241 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999 99999999999999999999999864 3456788999999875 599999999999999999998764322
Q ss_pred HHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccc
Q 001227 1046 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1090 (1119)
Q Consensus 1046 ~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e 1090 (1119)
... .......|+++||..|+++++||++.+
T Consensus 242 ~~~---------------~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 242 KSG---------------NEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------------------CCBCHHHHHHHHTTCCCCC---
T ss_pred ccc---------------ccccCCeecHHHHHHHHHHhcCCCChh
Confidence 110 011224799999999999999998754
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=2.7e-31 Score=293.46 Aligned_cols=279 Identities=45% Similarity=0.757 Sum_probs=222.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+..+|++++|++.+++.|.+.+..|+.++++|... ..++.++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL--RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 346799999999999999999999999999888644 356789999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCccc-CCccEEEEEecCCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DKERVLVLAATNRPFD 969 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k-~~~~VlVIaTTN~p~~ 969 (1119)
.+.+..+..++.+|..+....|+||||||+|.+...+... .......+.+.++..+++.... ...+++||++||.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 9999999999999999999999999999999998665431 1222345566677777765432 1257999999999999
Q ss_pred CcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001227 970 LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1048 (1119)
Q Consensus 970 Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l-~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e 1048 (1119)
+++++++||+..+.+++|+.++|..|++.++..... .++.+++.++..+.||+++||.++|+.|+..++++.......
T Consensus 172 l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~- 250 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK- 250 (297)
T ss_dssp BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc-
Confidence 999999999999999999999999999999887654 356778999999999999999999999999998875221110
Q ss_pred HHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCCC
Q 001227 1049 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1108 (1119)
Q Consensus 1049 ~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~ 1108 (1119)
. ....+..+|+++||..|+.+++|+...+ ....+.+|++.||.-.
T Consensus 251 -~------------~~~~~~~~i~~~d~~~a~~~~~~s~~~~--~~~~~~~~~~~~~~~~ 295 (297)
T 3b9p_A 251 -C------------LDISAMRAITEQDFHSSLKRIRRSVAPQ--SLNSYEKWSQDYGDIT 295 (297)
T ss_dssp ----------------CCCCCCCCHHHHHHHTTSCCCSSCHH--HHHHHHHHC-------
T ss_pred -c------------ccccccCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCee
Confidence 0 0112346799999999999999998665 4567899999999643
No 19
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=298.48 Aligned_cols=277 Identities=45% Similarity=0.794 Sum_probs=221.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
...+|++|+|++.+++.|.+++..++.+++.|...+ .+++++||+||||||||++|++||++++.+|+.++|+++.+.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR--APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG--CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC--CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 357899999999999999999999998888887553 466899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 971 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld 971 (1119)
+.|..+..++.+|..++...|+||||||||.|+..+.. ..+....++++.|+..+++.......+++||+|||.++.++
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 99999999999999999999999999999999866543 23334567778888888876654557899999999999999
Q ss_pred HHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001227 972 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1050 (1119)
Q Consensus 972 ~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~ 1050 (1119)
+++++||...+++++|+.++|.+||+.++...... .+.++..|+..+.||++++|..||+.|+..+++++.....
T Consensus 267 ~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~---- 342 (389)
T 3vfd_A 267 EAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQV---- 342 (389)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC------
T ss_pred HHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhh----
Confidence 99999999899999999999999999998875433 5678899999999999999999999999998887421110
Q ss_pred HHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCC
Q 001227 1051 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1107 (1119)
Q Consensus 1051 ~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~ 1107 (1119)
......+.+.|+++||..|+++++++...+ ....+.+|+..||..
T Consensus 343 ----------~~~~~~~~~~i~~~d~~~al~~~~~s~~~~--~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 343 ----------KNMSASEMRNIRLSDFTESLKKIKRSVSPQ--TLEAYIRWNKDFGDT 387 (389)
T ss_dssp -----------CCSSSCCCCCCHHHHHHHHHHCCCSSCHH--HHHHHHHHHHHCC--
T ss_pred ----------hccchhhcCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCc
Confidence 001123456899999999999999998654 456789999999974
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=6.9e-30 Score=280.24 Aligned_cols=267 Identities=40% Similarity=0.653 Sum_probs=217.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
..+|++|+|++++++.|.+.+..++..++.|...++ .++.++||+||||||||++|+++|++++.+++.+++.++...+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC-CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 578999999999999999999999999999988774 4568999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 970 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 970 (1119)
.+..+..+..+|..+....|+||||||+|.+.+.+... .........+..++..+++... ..+++||+|||.++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDIL 169 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGGB
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999998765432 1222334455566666665543 3579999999999999
Q ss_pred cHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001227 971 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1048 (1119)
Q Consensus 971 d~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e 1048 (1119)
++++++ ||+..+.++.|+.++|.+|++.++....+..+.++..++..+.||+++||..+|+.|...|+++.
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~------- 242 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL------- 242 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 999999 99999999999999999999999988888888899999999999999999999999998877641
Q ss_pred HHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCCC
Q 001227 1049 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1108 (1119)
Q Consensus 1049 ~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~ 1108 (1119)
...|+++||..|++++.+...........+--|...+|.-+
T Consensus 243 -------------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
T 3h4m_A 243 -------------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHH 283 (285)
T ss_dssp -------------------CSSBCHHHHHHHHHHHHHHHCCC------------------
T ss_pred -------------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCC
Confidence 24699999999999998877666667778888988887644
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=3.9e-29 Score=295.47 Aligned_cols=265 Identities=38% Similarity=0.586 Sum_probs=219.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
....+|+||+|.+++++++.+.+.. +..++.|...+. ++++++||+||||||||+||+++|.+++.+|+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH
Confidence 4578999999999999999998875 667888887774 45689999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.+.|..+..++.+|..|+...|+||||||||.+...+... +......+++++++..++++.. +.+++||++||+++
T Consensus 88 ~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPD 165 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGG
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChh
Confidence 9999999999999999999999999999999998765421 2223345677888888887643 36799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.++++++| ||++.+.+++|+.++|.+|++.++++..+..++++..++..+.||+++||.++|+.|+..+.++
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~------ 239 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE------ 239 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999888888889999999999999999999999998877653
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcccccccccc----chhhhHHHHHhc
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTN----MNELLQWNELYG 1105 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~----~~~~v~W~DigG 1105 (1119)
....|+++||..|++++.+........ ....+.|.+.|+
T Consensus 240 --------------------~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~ 282 (476)
T 2ce7_A 240 --------------------GRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGH 282 (476)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHH
T ss_pred --------------------CCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhh
Confidence 124699999999999987654332212 235578888875
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=9.7e-29 Score=268.03 Aligned_cols=245 Identities=39% Similarity=0.613 Sum_probs=206.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+..+|++|+|++.+++.+.+.+.. +.+++.|...+. .+++++||+||||||||++|+++|+.++.+++.++++++..
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 3467899999999999999998764 667777766553 45578999999999999999999999999999999999998
Q ss_pred ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 891 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.+.+..+..++.+|..|....|++|||||||.+...+... +.......+++.++..++++.. ..+++||+|||.++
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 161 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCch
Confidence 8899999999999999999899999999999997655431 1223334567777777877643 36799999999999
Q ss_pred CCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Q 001227 969 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1046 (1119)
Q Consensus 969 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~ 1046 (1119)
.+++++++ ||++.+.+++|+.++|.+|++.++....+.++.++..++..+.||+++||.++|+.|+..+.++
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 235 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 235 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998888888888999999999999999999999998877653
Q ss_pred HHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcc
Q 001227 1047 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1085 (1119)
Q Consensus 1047 ~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~p 1085 (1119)
....|+++||..|++.+..
T Consensus 236 --------------------~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 236 --------------------NKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHTT
T ss_pred --------------------CCCcccHHHHHHHHHHHhc
Confidence 1247999999999998764
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=266.00 Aligned_cols=247 Identities=35% Similarity=0.547 Sum_probs=189.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
..+|++++|++.+++.|.+++.. +..++.|...+. .+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 46899999999999999998875 667777776664 4558999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCc---hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 969 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~---~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 969 (1119)
.+..+..++.+|..+....|+||||||+|.+...+.... ........++.++..+++... ..+++||+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 888888999999999998999999999999976553211 011223445566666666532 357999999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChh--cHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHH
Q 001227 970 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDV--DLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1045 (1119)
Q Consensus 970 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~--dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~ 1045 (1119)
+++++++ ||+..+++++|+.++|.+|++.++....+..+. .+..++..+.||+++||.++|+.|+..+.++.
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~---- 233 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG---- 233 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---------
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999 999999999999999999999999887655433 35789999999999999999999998887641
Q ss_pred HHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhcccccc
Q 001227 1046 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1089 (1119)
Q Consensus 1046 ~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~ 1089 (1119)
...|+++||..|++++.++...
T Consensus 234 ----------------------~~~i~~~d~~~a~~~~~~~~~~ 255 (262)
T 2qz4_A 234 ----------------------HTSVHTLNFEYAVERVLAGTAK 255 (262)
T ss_dssp -------------------------CCBCCHHHHHHHHHHHHHC
T ss_pred ----------------------CCCCCHHHHHHHHHHhccChhh
Confidence 1368999999999998776543
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=1.3e-27 Score=284.05 Aligned_cols=264 Identities=36% Similarity=0.561 Sum_probs=221.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
+..+|+|++|+++++.++.+++.. +..+..|...+. ..++|+||+||||||||+||++||.+++.+++.++++++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~-~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 468999999999999999998765 666777777664 455789999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 969 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 969 (1119)
+.+.....++.+|+.++...|+|+||||||.+...+... ..+....+.+++++..+++... +..+++|++||+|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 888888889999999988889999999999997655421 2234445677888888887653 357899999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001227 970 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1047 (1119)
Q Consensus 970 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~ 1047 (1119)
||++++| ||++.+.+++|+.++|.+||+.+++...+.+++++..+|..+.|++++||.++|++|+..+.++
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~------- 254 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 254 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT-------
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 8999999999999999999999988777778889999999999999999999999998776542
Q ss_pred HHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccc----hhhhHHHHHhc
Q 001227 1048 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNM----NELLQWNELYG 1105 (1119)
Q Consensus 1048 e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~----~~~v~W~DigG 1105 (1119)
....|+++||..|++++.+........+ ...+.|.++|+
T Consensus 255 -------------------~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~ 297 (499)
T 2dhr_A 255 -------------------GRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGH 297 (499)
T ss_dssp -------------------CCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHH
T ss_pred -------------------CCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHH
Confidence 1246999999999999987754332222 35678888876
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=8.4e-29 Score=269.57 Aligned_cols=252 Identities=36% Similarity=0.560 Sum_probs=205.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001227 810 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 889 (1119)
Q Consensus 810 ~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~ 889 (1119)
..+..+|++|+|++.+++.+.+.+.. +.+++.|...+. .+++++||+||||||||++|+++|++++.+++.++++.+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 34467899999999999999998774 778888877664 4557899999999999999999999999999999999988
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch---hHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001227 890 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE---HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 966 (1119)
Q Consensus 890 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~---~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~ 966 (1119)
..+.+..+..++.+|..+....|+||||||+|.|...+...+. ......+++.++..+++... ...+++||+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~ 160 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNR 160 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBSC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecCC
Confidence 8888877777888999999989999999999999765422110 00112345667777776543 2356899999999
Q ss_pred CCCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHH
Q 001227 967 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1044 (1119)
Q Consensus 967 p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~ 1044 (1119)
++.+++++++ ||+..+.+++|+.++|.++|+.++....+..+.+++.++..+.||+++||.++|+.|+..+.++
T Consensus 161 ~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~---- 236 (268)
T 2r62_A 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN---- 236 (268)
T ss_dssp CTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS----
T ss_pred chhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----
Confidence 9999999999 9999999999999999999999998877777888899999999999999999999998776442
Q ss_pred HHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccc
Q 001227 1045 EKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1090 (1119)
Q Consensus 1045 ~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e 1090 (1119)
....|+++||..|++++.++....
T Consensus 237 ----------------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 ----------------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp ----------------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred ----------------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 124699999999999998886554
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=3.6e-26 Score=247.45 Aligned_cols=241 Identities=39% Similarity=0.600 Sum_probs=198.7
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001227 810 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 889 (1119)
Q Consensus 810 ~e~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~ 889 (1119)
..+..+|++++|++.++.++++++.. +..+..+...++ ..++|++|+||||||||+|+++++..++.+++.+++.++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~-~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTC-CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34578999999999999999987764 556667766664 3457899999999999999999999999999999998887
Q ss_pred cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 001227 890 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 967 (1119)
Q Consensus 890 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p 967 (1119)
..+.+.....+..+|+.+....|+++|+||||.+...+... .........++.++..+++... ...++++++||.|
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p 164 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 164 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCc
Confidence 77777777889999999988889999999999987554321 1223345667778878777543 3568999999999
Q ss_pred CCCcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHH
Q 001227 968 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1045 (1119)
Q Consensus 968 ~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~ 1045 (1119)
+.+|++++| ||+..+.++.|+.++|.+||+.+++...+..+.++..+|..++||+++||.++|+.|+..+.++
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~----- 239 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE----- 239 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999999 8999999999999999999999988877778889999999999999999999999998876553
Q ss_pred HHHHHHHHhhccCCCCCCCCCccccccHHHHHHHH
Q 001227 1046 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAH 1080 (1119)
Q Consensus 1046 ~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al 1080 (1119)
....|+++||++|+
T Consensus 240 ---------------------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 ---------------------GRRKITMKDLEEAA 253 (254)
T ss_dssp ---------------------TCSSBCHHHHHHHT
T ss_pred ---------------------cCCCcCHHHHHHHh
Confidence 12469999999885
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=1.9e-26 Score=288.84 Aligned_cols=286 Identities=37% Similarity=0.606 Sum_probs=243.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 892 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~ 892 (1119)
.++|++|+|++.+++.|.+.+..|+.+|++|...++ .++.++||+||||||||+||++||.+++.+++.+++.++.+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 578999999999999999999999999999988774 4668999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 001227 893 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 972 (1119)
Q Consensus 893 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 972 (1119)
.++.+..++.+|..+....|++|||||||.++..+... ..+...++...++..+++.... ..+++|+|||+++.+++
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcCH
Confidence 99999999999999999999999999999998766432 2344567778888888887543 67999999999999999
Q ss_pred HHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001227 973 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1050 (1119)
Q Consensus 973 aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~ 1050 (1119)
++.+ ||+..+.++.|+.++|.+|++.++.+..+..+.++..++..+.||+++++..+|..|+..++++..........
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~ 435 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhh
Confidence 9998 99999999999999999999999988888888899999999999999999999999998887764321110000
Q ss_pred HHHhhccCCCCCCCCCccccccHHHHHHHHHHhccccccccccchhhhHHHHHhcCCCccc
Q 001227 1051 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1111 (1119)
Q Consensus 1051 ~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~DigG~~~~RK 1111 (1119)
... ........++++||..++....++...+.....+.+.|+|++|++.+|+
T Consensus 436 -~~~--------~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~ 487 (806)
T 1ypw_A 436 -TID--------AEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp -HCC--------HHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHH
T ss_pred -ccc--------hhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhh
Confidence 000 0001234688999999999999998888777789999999999998875
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=9.8e-25 Score=239.92 Aligned_cols=239 Identities=39% Similarity=0.601 Sum_probs=196.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 891 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~ 891 (1119)
+..+|++++|.++++.++.+++.. +..+..+...++. .+++++|+||||||||+|+++|+..++.+++.+++.++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~-~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCC-CCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 468999999999999999987764 4556666666543 44689999999999999999999999999999999888777
Q ss_pred cccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 001227 892 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 969 (1119)
Q Consensus 892 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~ 969 (1119)
+.+.....+..+|+.+....|+++|+||||.+...+... .........++.++..+++... ...++++++||.|+.
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 190 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTS
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchh
Confidence 777777888999999988889999999999886544321 1123345566777777777542 356899999999999
Q ss_pred CcHHHHh--ccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001227 970 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1047 (1119)
Q Consensus 970 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~ 1047 (1119)
+|++++| ||+..+.+++|+.++|.+||+.+++...+..+.++..+|..++||+++||.++|+.|+..+.++
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------- 263 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 263 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-------
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 8999999999999999999999988877778888999999999999999999999998766542
Q ss_pred HHHHHHhhccCCCCCCCCCccccccHHHHHHHH
Q 001227 1048 ERALALAENRASPPLYSSVDVRPLKMDDFKYAH 1080 (1119)
Q Consensus 1048 e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al 1080 (1119)
....|+++||++|+
T Consensus 264 -------------------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 264 -------------------GRRKITMKDLEEAA 277 (278)
T ss_dssp -------------------TCCSBCHHHHHHHT
T ss_pred -------------------CCCCcCHHHHHHHh
Confidence 12469999999885
No 29
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.1e-23 Score=240.66 Aligned_cols=233 Identities=17% Similarity=0.175 Sum_probs=185.7
Q ss_pred ccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001227 316 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 395 (1119)
Q Consensus 316 ~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 395 (1119)
.-+|||++.--+ |+.|..|.++.-..|+|+++ |.+---+..+.|||.||||| ...+||||+|++.+++++.++.
T Consensus 142 ~p~v~~~dIgGl--~~~k~~l~e~v~~Pl~~pe~--f~~~gi~~prGvLL~GPPGT--GKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 142 VPDSTYDMVGGL--TKQIKEIKEVIELPVKHPEL--FESLGIAQPKGVILYGPPGT--GKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp SCSCCGGGSCSC--HHHHHHHHHHTHHHHHCHHH--HHHHTCCCCCCEEEESCSSS--SHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCceEEeCCCCC--CHHHHHHHHHHhhCCCceEEEh
Confidence 357999999999 99999999999999999987 44422334588999999999 7999999999999999999987
Q ss_pred cCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceee
Q 001227 396 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 475 (1119)
Q Consensus 396 ~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~ 475 (1119)
+.+.+.+-
T Consensus 216 s~l~sk~v------------------------------------------------------------------------ 223 (405)
T 4b4t_J 216 AELVQKYI------------------------------------------------------------------------ 223 (405)
T ss_dssp GGGSCSST------------------------------------------------------------------------
T ss_pred HHhhcccc------------------------------------------------------------------------
Confidence 55544211
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhhH
Q 001227 476 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 555 (1119)
Q Consensus 476 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k 555 (1119)
.+..
T Consensus 224 ----------------------------------------------------------------------------Gese 227 (405)
T 4b4t_J 224 ----------------------------------------------------------------------------GEGS 227 (405)
T ss_dssp ----------------------------------------------------------------------------THHH
T ss_pred ----------------------------------------------------------------------------chHH
Confidence 1123
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhccC-----------hhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccC
Q 001227 556 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKS 622 (1119)
Q Consensus 556 ~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~-----------~~~~~~l~~~L~~L~--g~vvvIgs~~~~d~~k~k~ 622 (1119)
..+..+|+.+.. ..|.||||||+|.++... ....+.|-..|+.+. .+|+||||||
T Consensus 228 ~~vr~lF~~Ar~---~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN--------- 295 (405)
T 4b4t_J 228 RMVRELFVMARE---HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN--------- 295 (405)
T ss_dssp HHHHHHHHHHHH---TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES---------
T ss_pred HHHHHHHHHHHH---hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC---------
Confidence 356788888888 899999999999965421 223445555566553 4999999999
Q ss_pred CCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhc
Q 001227 623 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 700 (1119)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~g 700 (1119)
+||.+|+ ||+| ||++++++++||..+
T Consensus 296 ---------------------rpd~LDp-------------------------------AllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 296 ---------------------RLDILDP-------------------------------ALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp ---------------------CSSSSCH-------------------------------HHHSTTSSCCEEECCCCCHHH
T ss_pred ---------------------ChhhCCH-------------------------------hHcCCCcCceEEEcCCcCHHH
Confidence 6777887 9999 999999999999999
Q ss_pred ccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhh
Q 001227 701 QSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQ 779 (1119)
Q Consensus 701 R~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~ 779 (1119)
|.+|+++|++ ..++ ++++++.||..|.||+||||+.+|++|+..|+.+.. ..+...||+.+.
T Consensus 324 R~~Il~~~~~--~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~---------------~~vt~~Df~~Al 386 (405)
T 4b4t_J 324 RAEILRIHSR--KMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR---------------IHVTQEDFELAV 386 (405)
T ss_dssp HHHHHHHHHT--TSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC---------------SBCCHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHHHH
Confidence 9999999975 2234 678999999999999999999999999999987421 124567787776
Q ss_pred hhhh
Q 001227 780 SESK 783 (1119)
Q Consensus 780 ~eik 783 (1119)
.++.
T Consensus 387 ~~v~ 390 (405)
T 4b4t_J 387 GKVM 390 (405)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 30
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.1e-23 Score=240.11 Aligned_cols=234 Identities=18% Similarity=0.177 Sum_probs=185.8
Q ss_pred CccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 315 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 315 ~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
+..+|||++.--+ |+.|..|.++.-..|+|+++ |.+.--+..+.|||.||||| ...+||||+|++++++++.++
T Consensus 175 ~~p~v~~~DIgGl--d~~k~~L~e~v~~Pl~~pe~--f~~~Gi~~prGvLLyGPPGT--GKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 175 KSPTESYSDIGGL--ESQIQEIKESVELPLTHPEL--YEEMGIKPPKGVILYGAPGT--GKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp SSCCCCGGGTCSC--HHHHHHHHHHHHHHHHCCHH--HHHHTCCCCSEEEEESSTTT--THHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCcceecCcH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCCCceECCCCc--hHHHHHHHHHHHhCCCEEEEE
Confidence 5678999999999 99999999999999999987 44333445588999999999 799999999999999999998
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001227 395 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 474 (1119)
Q Consensus 395 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 474 (1119)
.+.+.+.+-
T Consensus 249 ~s~l~sk~v----------------------------------------------------------------------- 257 (437)
T 4b4t_I 249 GSELIQKYL----------------------------------------------------------------------- 257 (437)
T ss_dssp SGGGCCSSS-----------------------------------------------------------------------
T ss_pred HHHhhhccC-----------------------------------------------------------------------
Confidence 755544211
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhh
Q 001227 475 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 554 (1119)
Q Consensus 475 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 554 (1119)
.+.
T Consensus 258 -----------------------------------------------------------------------------Ges 260 (437)
T 4b4t_I 258 -----------------------------------------------------------------------------GDG 260 (437)
T ss_dssp -----------------------------------------------------------------------------SHH
T ss_pred -----------------------------------------------------------------------------chH
Confidence 112
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcC--CCCEEEEeeccCCCccccc
Q 001227 555 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEK 621 (1119)
Q Consensus 555 k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~---~~~~~~l~~~L~~L--~g~vvvIgs~~~~d~~k~k 621 (1119)
...+..+|+.+.+ ..|.||||||+|.++.. + ....+.+-..++.+ .++|+||||||
T Consensus 261 ek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN-------- 329 (437)
T 4b4t_I 261 PRLCRQIFKVAGE---NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN-------- 329 (437)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES--------
T ss_pred HHHHHHHHHHHHh---cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC--------
Confidence 3356788888887 89999999999996552 1 12334444455554 35899999999
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhh
Q 001227 622 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 699 (1119)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~ 699 (1119)
.||.+|+ ||+| ||++++++++||..
T Consensus 330 ----------------------rpd~LDp-------------------------------ALlRpGRfD~~I~v~lPd~~ 356 (437)
T 4b4t_I 330 ----------------------KIETLDP-------------------------------ALIRPGRIDRKILFENPDLS 356 (437)
T ss_dssp ----------------------CSTTCCT-------------------------------TSSCTTTEEEEECCCCCCHH
T ss_pred ----------------------ChhhcCH-------------------------------HHhcCCceeEEEEcCCcCHH
Confidence 6777887 9999 99999999999999
Q ss_pred cccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhh
Q 001227 700 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 778 (1119)
Q Consensus 700 gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a 778 (1119)
+|.+|+++|+. ..++ ++++++.||..|.||+||||+.+|++|+..|+.+... .+...||..+
T Consensus 357 ~R~~Il~~~l~--~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~---------------~It~eDf~~A 419 (437)
T 4b4t_I 357 TKKKILGIHTS--KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRM---------------QVTAEDFKQA 419 (437)
T ss_dssp HHHHHHHHHHT--TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS---------------CBCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------ccCHHHHHHH
Confidence 99999999975 2234 6789999999999999999999999999999874221 2456777777
Q ss_pred hhhhh
Q 001227 779 QSESK 783 (1119)
Q Consensus 779 ~~eik 783 (1119)
...+.
T Consensus 420 l~rv~ 424 (437)
T 4b4t_I 420 KERVM 424 (437)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
No 31
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=9e-23 Score=238.19 Aligned_cols=236 Identities=17% Similarity=0.178 Sum_probs=186.5
Q ss_pred CCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001227 314 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 393 (1119)
Q Consensus 314 ~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~l 393 (1119)
-+.-+|||++.--+ ++.|..|.++.-..|+|++. |.+.--+..+.|||.||||| ...+||||+|++++++++.+
T Consensus 173 ~~~p~~t~~digGl--~~~k~~l~e~v~~pl~~pe~--f~~~g~~~prGvLLyGPPGT--GKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 173 DEKPTETYSDVGGL--DKQIEELVEAIVLPMKRADK--FKDMGIRAPKGALMYGPPGT--GKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp ESSCSCCGGGSCSC--HHHHHHHHHHTHHHHHCSHH--HHHHCCCCCCEEEEESCTTS--SHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCChHhcCcH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCeeEEECcCCC--CHHHHHHHHHHHhCCCEEEE
Confidence 35678999999888 99999999999999999987 44433445689999999999 79999999999999999999
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce
Q 001227 394 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 473 (1119)
Q Consensus 394 Ds~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 473 (1119)
+.+.+.+.+-
T Consensus 247 ~~s~l~~~~v---------------------------------------------------------------------- 256 (434)
T 4b4t_M 247 AAPQLVQMYI---------------------------------------------------------------------- 256 (434)
T ss_dssp EGGGGCSSCS----------------------------------------------------------------------
T ss_pred ehhhhhhccc----------------------------------------------------------------------
Confidence 8765544221
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001227 474 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 553 (1119)
Q Consensus 474 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 553 (1119)
| +
T Consensus 257 ---G---------------------------------------------------------------------------e 258 (434)
T 4b4t_M 257 ---G---------------------------------------------------------------------------E 258 (434)
T ss_dssp ---S---------------------------------------------------------------------------H
T ss_pred ---c---------------------------------------------------------------------------h
Confidence 1 1
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hh---hHHHHHHHHhcCC--CCEEEEeeccCCCcccc
Q 001227 554 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------ND---AYGALKSKLENLP--SNVVVIGSHTQLDSRKE 620 (1119)
Q Consensus 554 ~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~--------~~---~~~~l~~~L~~L~--g~vvvIgs~~~~d~~k~ 620 (1119)
....+..+|+.+.. ..|+||||||+|.++... .+ ..+.|-..|+.+. ++|+||||||
T Consensus 259 se~~ir~lF~~A~~---~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN------- 328 (434)
T 4b4t_M 259 GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN------- 328 (434)
T ss_dssp HHHHHHHHHHHHHH---HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS-------
T ss_pred HHHHHHHHHHHHHh---cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC-------
Confidence 22356778888887 899999999999966521 12 2334445555553 3899999999
Q ss_pred cCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhh
Q 001227 621 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 698 (1119)
Q Consensus 621 k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~ 698 (1119)
.||.+|+ ||+| ||++++++++||.
T Consensus 329 -----------------------rp~~LD~-------------------------------AllRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 329 -----------------------RVDVLDP-------------------------------ALLRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp -----------------------SCCCCCT-------------------------------TTCSTTSEEEEEECCCCCH
T ss_pred -----------------------CchhcCH-------------------------------hHhcCCceeEEEEeCCcCH
Confidence 6777887 9988 9999999999999
Q ss_pred hcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHh
Q 001227 699 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 777 (1119)
Q Consensus 699 ~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~ 777 (1119)
.+|.+|+++|++ .-++ ++++++.||..|.||+|+||+.+|++|+..|+.+... .+...||..
T Consensus 355 ~~R~~Il~~~~~--~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~---------------~i~~~Df~~ 417 (434)
T 4b4t_M 355 DSRAQILQIHSR--KMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS---------------SVKHEDFVE 417 (434)
T ss_dssp HHHHHHHHHHHH--HSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCS---------------SBCHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------CcCHHHHHH
Confidence 999999999976 2233 6789999999999999999999999999999875321 235677777
Q ss_pred hhhhhhh
Q 001227 778 IQSESKS 784 (1119)
Q Consensus 778 a~~eik~ 784 (1119)
+..++++
T Consensus 418 Al~~v~~ 424 (434)
T 4b4t_M 418 GISEVQA 424 (434)
T ss_dssp HHHSCSS
T ss_pred HHHHHhC
Confidence 7666554
No 32
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.87 E-value=4.3e-21 Score=239.21 Aligned_cols=210 Identities=16% Similarity=0.210 Sum_probs=139.1
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccc
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF 893 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~ 893 (1119)
.+++|++.+++.+.+.+...... .....+|..++||+||||||||++|+++|+.+ +.+|+.++|+++...+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~-----~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAG-----LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTT-----CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcc-----cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 45899999999998887642110 00112343479999999999999999999997 78999999999887665
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC----
Q 001227 894 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---- 969 (1119)
Q Consensus 894 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~---- 969 (1119)
.. ...++...++.+++||||||||.+ ++..+..+.++++.......+-......++++|+|||.+..
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~-----~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~ 636 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKA-----HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDK 636 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGS-----CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHH
T ss_pred cc----cchhhHHHHhCCCeEEEEeCcccc-----CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHH
Confidence 54 122333444556789999999987 22222333333322110000111112356899999997544
Q ss_pred --------CcHHHHhccccccccCCCCHHHHHHHHHHHHhhc---------cc-CChhcHHHHHHHc--CCCcHHHHHHH
Q 001227 970 --------LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE---------EL-ASDVDLEGIANMA--DGYSGSDLKNL 1029 (1119)
Q Consensus 970 --------Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~---------~l-~~d~dl~~LA~~T--eGysg~DL~~L 1029 (1119)
+.+++++||+.++.|++|+.+++.+|++.++... .+ .++..++.|+... ..++.++|+++
T Consensus 637 ~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~ 716 (758)
T 3pxi_A 637 VMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRA 716 (758)
T ss_dssp HHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHH
T ss_pred HHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHH
Confidence 7899999999999999999999999999887652 11 1344466666542 35567889998
Q ss_pred HHHHHhhhHHH
Q 001227 1030 CVTAAHCPIRE 1040 (1119)
Q Consensus 1030 ~~~Aa~~airr 1040 (1119)
++.+...++.+
T Consensus 717 i~~~v~~~l~~ 727 (758)
T 3pxi_A 717 IQKHVEDRLSE 727 (758)
T ss_dssp HHHHTHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877665554
No 33
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.3e-22 Score=234.89 Aligned_cols=235 Identities=17% Similarity=0.170 Sum_probs=185.1
Q ss_pred CccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 315 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 315 ~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
+.-+|||++.--+ ++.|..|.++.-..|+|++. |.+-=-+..+.|||.||||| ...+||||+|++++++++.++
T Consensus 174 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~--f~~~g~~~prGvLL~GPPGt--GKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 174 EQGEITFDGIGGL--TEQIRELREVIELPLKNPEI--FQRVGIKPPKGVLLYGPPGT--GKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp ESCSSCSGGGCSC--HHHHHHHHHHHHHHHHCHHH--HHHHCCCCCCEEEEESCTTS--SHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCChhHhCCh--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCeEEEECCCCC--cHHHHHHHHHHHhCCCEEEEe
Confidence 4568999999888 99999999999999999986 43322345689999999999 799999999999999999998
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001227 395 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 474 (1119)
Q Consensus 395 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 474 (1119)
.+.+.+.+..
T Consensus 248 ~s~l~sk~~G---------------------------------------------------------------------- 257 (437)
T 4b4t_L 248 ASGIVDKYIG---------------------------------------------------------------------- 257 (437)
T ss_dssp GGGTCCSSSS----------------------------------------------------------------------
T ss_pred hhhhccccch----------------------------------------------------------------------
Confidence 7655442221
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhh
Q 001227 475 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 554 (1119)
Q Consensus 475 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 554 (1119)
..
T Consensus 258 ------------------------------------------------------------------------------es 259 (437)
T 4b4t_L 258 ------------------------------------------------------------------------------ES 259 (437)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 12
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCccccc
Q 001227 555 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEK 621 (1119)
Q Consensus 555 k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~---~~~~~~l~~~L~~L~--g~vvvIgs~~~~d~~k~k 621 (1119)
...+..+|+.+.. .+|+||||||+|.++.. + ....+.|-..|+.+. ++|+||||||
T Consensus 260 e~~ir~~F~~A~~---~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN-------- 328 (437)
T 4b4t_L 260 ARIIREMFAYAKE---HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN-------- 328 (437)
T ss_dssp HHHHHHHHHHHHH---SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES--------
T ss_pred HHHHHHHHHHHHh---cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC--------
Confidence 2356677888877 89999999999996542 1 123444555566553 4899999999
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhh
Q 001227 622 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 699 (1119)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~ 699 (1119)
.||.+|+ ||+| ||++++++++||..
T Consensus 329 ----------------------rp~~LDp-------------------------------AllRpGRfD~~I~i~lPd~~ 355 (437)
T 4b4t_L 329 ----------------------RPDTLDP-------------------------------ALLRPGRLDRKVEIPLPNEA 355 (437)
T ss_dssp ----------------------STTSSCT-------------------------------TTTSTTSEEEEECCCCCCHH
T ss_pred ----------------------CchhhCH-------------------------------HHhCCCccceeeecCCcCHH
Confidence 6777887 9988 79999999999999
Q ss_pred cccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhh
Q 001227 700 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 778 (1119)
Q Consensus 700 gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a 778 (1119)
+|.+|+++|+.- .++ .+++++.||..|.||+|+||+.+|++|+..|+.+... .+...||..+
T Consensus 356 ~R~~Il~~~~~~--~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~---------------~i~~~d~~~A 418 (437)
T 4b4t_L 356 GRLEIFKIHTAK--VKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD---------------HINPDDLMKA 418 (437)
T ss_dssp HHHHHHHHHHHT--SCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCS---------------SBCHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------CCCHHHHHHH
Confidence 999999999752 223 6789999999999999999999999999999874221 2456677777
Q ss_pred hhhhhh
Q 001227 779 QSESKS 784 (1119)
Q Consensus 779 ~~eik~ 784 (1119)
...+.+
T Consensus 419 l~~v~~ 424 (437)
T 4b4t_L 419 VRKVAE 424 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
No 34
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.9e-22 Score=230.85 Aligned_cols=234 Identities=19% Similarity=0.166 Sum_probs=183.3
Q ss_pred CccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 315 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 315 ~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
+.-+|||++.--+ ++.|..|.++....|++++. |.+-=-+..+.|||.||||| ...+||||+|++++++++.++
T Consensus 202 e~P~vt~~DIgGl--~~~k~~L~e~V~~pl~~pe~--f~~~Gi~pprGILLyGPPGT--GKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 202 EKPDVTYSDVGGC--KDQIEKLREVVELPLLSPER--FATLGIDPPKGILLYGPPGT--GKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp SSCSCCCSSCTTC--HHHHHHHHHHTHHHHHCHHH--HHHHTCCCCSEEEECSCTTS--SHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHhcCHHH--HHHCCCCCCCceEeeCCCCC--cHHHHHHHHHhccCCCeEEEE
Confidence 3457999999888 99999999999999999986 33311345689999999999 799999999999999999998
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001227 395 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 474 (1119)
Q Consensus 395 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 474 (1119)
.+.+.+.+-
T Consensus 276 ~s~L~sk~v----------------------------------------------------------------------- 284 (467)
T 4b4t_H 276 GSELVQKYV----------------------------------------------------------------------- 284 (467)
T ss_dssp GGGGCCCSS-----------------------------------------------------------------------
T ss_pred hHHhhcccC-----------------------------------------------------------------------
Confidence 765544221
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhh
Q 001227 475 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 554 (1119)
Q Consensus 475 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 554 (1119)
| ..
T Consensus 285 --G---------------------------------------------------------------------------es 287 (467)
T 4b4t_H 285 --G---------------------------------------------------------------------------EG 287 (467)
T ss_dssp --S---------------------------------------------------------------------------HH
T ss_pred --C---------------------------------------------------------------------------HH
Confidence 1 11
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC-----------hhhHHHHHHHHhcC--CCCEEEEeeccCCCccccc
Q 001227 555 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEK 621 (1119)
Q Consensus 555 k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~-----------~~~~~~l~~~L~~L--~g~vvvIgs~~~~d~~k~k 621 (1119)
...+..+|+.+.. ..|.||||||+|.++... ......+...|+.+ .++|+||||||
T Consensus 288 ek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN-------- 356 (467)
T 4b4t_H 288 ARMVRELFEMART---KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN-------- 356 (467)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS--------
T ss_pred HHHHHHHHHHHHh---cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC--------
Confidence 2356778888887 899999999999965521 12333344445555 34899999999
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhh
Q 001227 622 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 699 (1119)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~ 699 (1119)
+||.+|+ ||+| ||++++++++||..
T Consensus 357 ----------------------rpd~LDp-------------------------------ALlRpGRFD~~I~i~lPd~~ 383 (467)
T 4b4t_H 357 ----------------------RPNTLDP-------------------------------ALLRPGRIDRKVEFSLPDLE 383 (467)
T ss_dssp ----------------------CTTSBCH-------------------------------HHHSTTTCCEEECCCCCCHH
T ss_pred ----------------------CcccCCh-------------------------------hhhccccccEEEEeCCcCHH
Confidence 6777887 9999 99999999999999
Q ss_pred cccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhh
Q 001227 700 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 778 (1119)
Q Consensus 700 gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a 778 (1119)
+|.+|+++|++ .-++ .+++++.||..|.||+||||+.+|++|+..|+.+... .+...||..+
T Consensus 384 ~R~~Ilk~~l~--~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~---------------~it~~Df~~A 446 (467)
T 4b4t_H 384 GRANIFRIHSK--SMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK---------------VATEKDFLKA 446 (467)
T ss_dssp HHHHHHHHHHT--TSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS---------------SBCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC---------------ccCHHHHHHH
Confidence 99999999975 2234 6789999999999999999999999999999875321 1345677776
Q ss_pred hhhhh
Q 001227 779 QSESK 783 (1119)
Q Consensus 779 ~~eik 783 (1119)
..++.
T Consensus 447 l~kV~ 451 (467)
T 4b4t_H 447 VDKVI 451 (467)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
No 35
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.86 E-value=3.6e-21 Score=239.73 Aligned_cols=203 Identities=16% Similarity=0.244 Sum_probs=140.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc---
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--- 891 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l---~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~--- 891 (1119)
+++|++.+++.+...+... ..++ .+|..++||+||||||||++|+++|+.++.+++.++|+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 5789999999888876531 1122 2455579999999999999999999999999999999886542
Q ss_pred --cccchH-----HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCc-------ccCCcc
Q 001227 892 --WFGEGE-----KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKER 957 (1119)
Q Consensus 892 --~~G~~e-----~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~-------~k~~~~ 957 (1119)
.+|... .....+....++.+++||||||||.+ .+ .+++.|+..++... ...-.+
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-----~~-------~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----HP-------DVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-----CH-------HHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc-----CH-------HHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 222211 11122344445566799999999987 21 23333333333211 001246
Q ss_pred EEEEEecCCCC-------------------------CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc---------
Q 001227 958 VLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--------- 1003 (1119)
Q Consensus 958 VlVIaTTN~p~-------------------------~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~--------- 1003 (1119)
++||+|||... .+.+++++||+..+.|+.|+.+++..|++.++.+.
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~ 678 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGV 678 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 88999999743 57789999999899999999999999999988642
Q ss_pred cc-CChhcHHHHHHHc--CCCcHHHHHHHHHHHHhhhHHH
Q 001227 1004 EL-ASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 1040 (1119)
Q Consensus 1004 ~l-~~d~dl~~LA~~T--eGysg~DL~~L~~~Aa~~airr 1040 (1119)
.+ .++..++.|+... ..+..++|.++++.+...++.+
T Consensus 679 ~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 679 SLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred EEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 11 2344566677654 3556788888888887766554
No 36
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.85 E-value=3.5e-21 Score=214.28 Aligned_cols=175 Identities=20% Similarity=0.292 Sum_probs=131.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHH----HhcCCeEEEEccccccc
Q 001227 849 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSML 924 (1119)
Q Consensus 849 ~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID~L~ 924 (1119)
.++++++||+||||||||+||++||++++.+|+.++++++.+.+.|..+..++.+|..| ++..|+||||||||.++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 35668999999999999999999999999999999999999999999999999999999 57789999999999998
Q ss_pred cCCCCCch-hHHHHHHHHhhhhhccCCc---------ccCCccEEEEEecCCCCCCcHHHHh--ccccccccCCCCHHHH
Q 001227 925 GRRENPGE-HEAMRKMKNEFMVNWDGLR---------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNR 992 (1119)
Q Consensus 925 ~~r~s~~~-~~~l~~ll~~Ll~~ldgl~---------~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR 992 (1119)
+.+..... ......+.+.|+..+++.. .....+++||+|||.++.++++++| ||+..+. +|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 74432111 1122345566666665332 1134679999999999999999998 8986665 6899999
Q ss_pred HHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHH
Q 001227 993 EKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNL 1029 (1119)
Q Consensus 993 ~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L 1029 (1119)
.+|++.++... +.+.+.++..++||++++|..+
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHH
Confidence 99999887654 4568899999999999988643
No 37
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.2e-21 Score=226.27 Aligned_cols=216 Identities=20% Similarity=0.271 Sum_probs=176.0
Q ss_pred CccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 315 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 315 ~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
+..+|||++.--+ +..|.-|.++....|+++++ |.+-=-+..+.|||.||||| ...+||||+|++++++++.++
T Consensus 165 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~--~~~~g~~~prGiLL~GPPGt--GKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 165 EKPDVTYADVGGL--DMQKQEIREAVELPLVQADL--YEQIGIDPPRGVLLYGPPGT--GKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHHHHHHHCHHH--HHHHCCCCCCEEEEESCTTT--THHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCceEEEECCCCC--CHHHHHHHHHHHhCCCeEEEe
Confidence 4567999999988 99999999999999999987 33311244678999999999 799999999999999999998
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001227 395 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 474 (1119)
Q Consensus 395 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 474 (1119)
.+.+.+.+-
T Consensus 239 ~~~l~~~~~----------------------------------------------------------------------- 247 (428)
T 4b4t_K 239 GSEFVHKYL----------------------------------------------------------------------- 247 (428)
T ss_dssp GGGTCCSSC-----------------------------------------------------------------------
T ss_pred cchhhcccc-----------------------------------------------------------------------
Confidence 765544211
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhh
Q 001227 475 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 554 (1119)
Q Consensus 475 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 554 (1119)
| ..
T Consensus 248 --G---------------------------------------------------------------------------e~ 250 (428)
T 4b4t_K 248 --G---------------------------------------------------------------------------EG 250 (428)
T ss_dssp --S---------------------------------------------------------------------------HH
T ss_pred --c---------------------------------------------------------------------------hh
Confidence 1 11
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCccccc
Q 001227 555 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEK 621 (1119)
Q Consensus 555 k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~---~~~~~~l~~~L~~L~--g~vvvIgs~~~~d~~k~k 621 (1119)
...+..+|+.+.. ..|+||||||+|.++.. + .+..+.|-..|+.+. .+|+||||||
T Consensus 251 e~~ir~lF~~A~~---~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN-------- 319 (428)
T 4b4t_K 251 PRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN-------- 319 (428)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES--------
T ss_pred HHHHHHHHHHHHH---cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC--------
Confidence 2356778888877 89999999999997652 1 235566666777663 4899999999
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhh-hhhh
Q 001227 622 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD-VETL 698 (1119)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~-Lpd~ 698 (1119)
.||.+|+ ||+| ||+++++++ +|+.
T Consensus 320 ----------------------~~~~LD~-------------------------------AllRpGRfd~~I~~p~lPd~ 346 (428)
T 4b4t_K 320 ----------------------RADTLDP-------------------------------ALLRPGRLDRKIEFPSLRDR 346 (428)
T ss_dssp ----------------------CSSSCCH-------------------------------HHHSSSSEEEEEECCSSCCH
T ss_pred ----------------------ChhhcCh-------------------------------hhhcCCcceEEEEcCCCCCH
Confidence 6777787 9999 999999995 9999
Q ss_pred hcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhh
Q 001227 699 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 699 ~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r 750 (1119)
.+|..|+++|+. ..++ ++++++.||..|.||+||||+.+|++|+..|+.+
T Consensus 347 ~~R~~Il~~~~~--~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 347 RERRLIFGTIAS--KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp HHHHHHHHHHHH--SSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc--CCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 999999999975 2234 6789999999999999999999999999999875
No 38
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.82 E-value=3.1e-19 Score=225.33 Aligned_cols=209 Identities=17% Similarity=0.249 Sum_probs=141.4
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 891 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~-- 891 (1119)
.+++|.+..++.+...+...... -....+|..++||+||||||||++|++|++.+ +.+|+.++|+.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g-----~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAG-----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGG-----CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcc-----cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 56899999999988877631100 00012344689999999999999999999998 789999999876543
Q ss_pred ---cccchHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcc-------cCCc
Q 001227 892 ---WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKE 956 (1119)
Q Consensus 892 ---~~G~~e~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~-------k~~~ 956 (1119)
.+|....+ ...+....+..+++||||||||.+ + ..+++.|+..++.... -+-.
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----~-------~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----H-------PDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGC--------------CHHHHHHHCSSEEEEESSGGGS-----C-------HHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----C-------HHHHHHHHHHhccCceECCCCCEeccC
Confidence 22211111 122333444455689999999987 2 1234444444442210 0124
Q ss_pred cEEEEEecCC--------------------------CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc------
Q 001227 957 RVLVLAATNR--------------------------PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE------ 1004 (1119)
Q Consensus 957 ~VlVIaTTN~--------------------------p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~------ 1004 (1119)
+++||+|||. ...+.++|+.||+..+.+.+|+.++...|++.++....
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 6889999997 23467888999998999999999999999998886421
Q ss_pred ---c-CChhcHHHHHHHcC--CCcHHHHHHHHHHHHhhhHHHHH
Q 001227 1005 ---L-ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREIL 1042 (1119)
Q Consensus 1005 ---l-~~d~dl~~LA~~Te--Gysg~DL~~L~~~Aa~~airrll 1042 (1119)
+ .++..++.|+...- .++.++|+++++.+...+..+.+
T Consensus 781 ~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred CceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 1 24455677777665 67889999999998877766543
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=1.5e-18 Score=192.04 Aligned_cols=215 Identities=16% Similarity=0.197 Sum_probs=162.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecCcc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 888 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l--~~P~~gILL~GPpGTGKT~LArAIA~el-------g~~fi~V~~s~L 888 (1119)
+|+|++.+++.|.+.+..+.. +..+.+.++ ..+..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 699999999999998876442 444433333 2344579999999999999999999988 348999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 889 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 889 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.+.++|.....+..+|..+ .++||||||+|.|+..+...... ..+++.|+..++. ...++++|++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~---~~~~~~Ll~~l~~----~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYG---QEAIEILLQVMEN----NRDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCT---HHHHHHHHHHHHH----CTTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCccccc---HHHHHHHHHHHhc----CCCCEEEEEeCChHH
Confidence 9999999888888888887 35899999999997554321111 2334444444443 235678889987643
Q ss_pred -----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHH-------cCCCcHHHHHHHHHHHHh
Q 001227 969 -----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANM-------ADGYSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 969 -----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~-------TeGysg~DL~~L~~~Aa~ 1035 (1119)
.+++++++||+..+.|+.|+.+++.+|++.++...... ++..+..++.. ....+++++.++++.|+.
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999875543 44456666665 223468999999999998
Q ss_pred hhHHHHHH
Q 001227 1036 CPIREILE 1043 (1119)
Q Consensus 1036 ~airrlle 1043 (1119)
.+..+++.
T Consensus 261 ~~~~r~~~ 268 (309)
T 3syl_A 261 RQANRLFT 268 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777654
No 40
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.77 E-value=1.2e-20 Score=222.33 Aligned_cols=202 Identities=20% Similarity=0.232 Sum_probs=137.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccc
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSIT 889 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~s~L~ 889 (1119)
+...|++++|++++++.+.+++.. +. .+ ..|++++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~-------~~-~~-~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVEL-------IK-SK-KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------HH-TT-CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred hhhchhhccCHHHHHHHHHHHHHH-------HH-hC-CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 355789999999999999887753 11 12 23568999999999999999999999998 999999999999
Q ss_pred cccccchHHHHHHHHHHH---HhcCCeEEEEccccccccCCCCCch---hHHHHHHHH---------------hhhhhcc
Q 001227 890 SKWFGEGEKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGE---HEAMRKMKN---------------EFMVNWD 948 (1119)
Q Consensus 890 s~~~G~~e~~I~~lF~~A---~k~~PsILfIDEID~L~~~r~s~~~---~~~l~~ll~---------------~Ll~~ld 948 (1119)
+.+.|+.+. ++.+|..| +...|+||||||||.+++.+..... .....+++. .++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999887 99999999 7788999999999999987754311 111122222 2333333
Q ss_pred CCcccCCccEEEEEecCCCCCCcHHHHh--cccc--ccccCCCC--HHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCc
Q 001227 949 GLRTKDKERVLVLAATNRPFDLDEAVVR--RLPR--RLMVNLPD--APNREKIIRVILAKEELASDVDLEGIANMADGYS 1022 (1119)
Q Consensus 949 gl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~--~I~v~lPd--~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGys 1022 (1119)
.........++|++|||.++.+++++.| ||+. .+.++.|+ .++|.+|++.+. ..+++.++..++|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~-------~~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT-------LHDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE-------HHHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH-------HHHHHHHHHhCCC--
Confidence 2111233556667899999999999877 8988 56677774 477877776443 2378899999999
Q ss_pred HHHHHHHHHH
Q 001227 1023 GSDLKNLCVT 1032 (1119)
Q Consensus 1023 g~DL~~L~~~ 1032 (1119)
|+||.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999954
No 41
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.74 E-value=7.8e-18 Score=185.42 Aligned_cols=247 Identities=21% Similarity=0.263 Sum_probs=162.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccch
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 896 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s-~~~G~~ 896 (1119)
+++|++.+++.+...+..++.+..+........++.++||+||||||||++|+++|+.++.+++.++|+.+.. .+.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 5889999999999887654333221111101134578999999999999999999999999999999988765 444432
Q ss_pred -HHHHHHHHHHH-----HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcc------cCCccEEEEEe-
Q 001227 897 -EKYVKAVFSLA-----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAA- 963 (1119)
Q Consensus 897 -e~~I~~lF~~A-----~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~------k~~~~VlVIaT- 963 (1119)
...++.++..+ ....++||||||+|.+...............+.+.|+..+++... ....++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 34566666532 112368999999999976543322222222344555555554210 12246788888
Q ss_pred ---cCCCCCCcHHHHhccccccccCCCCHHHHHHHHHH----HH-------hhcc---cCChhcHHHHHHHcC-------
Q 001227 964 ---TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV----IL-------AKEE---LASDVDLEGIANMAD------- 1019 (1119)
Q Consensus 964 ---TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~----ll-------~k~~---l~~d~dl~~LA~~Te------- 1019 (1119)
++.+..+++++++||+..+.++.|+.+++.+|++. ++ .... ..++..++.|+..+.
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 255 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 255 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc
Confidence 45778899999999998899999999999999983 22 1112 124455666776652
Q ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhc
Q 001227 1020 GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1020 Gysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~ 1084 (1119)
+.+.+.+.++++.+...+..+. .. .......|+.+|++.|+.+..
T Consensus 256 ~g~~R~l~~~l~~~~~~~~~~~------------~~--------~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 256 NIGARRLHTVMERLMDKISFSA------------SD--------MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CCTTHHHHHHHHHHSHHHHHHG------------GG--------CTTCEEEECHHHHHHHTCSSS
T ss_pred ccCcHHHHHHHHHHHHhhhcCC------------cc--------ccCCEEEEeeHHHHHHHHhhh
Confidence 4567788888777654432211 00 011223599999999987653
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.74 E-value=4.7e-17 Score=184.48 Aligned_cols=219 Identities=19% Similarity=0.214 Sum_probs=155.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCcccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITS 890 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~--~fi~V~~s~L~s 890 (1119)
..+|++++|.+..++.+..++.. ...+ ..+++++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~-------~~~~--~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEM-------IREG--KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH-------HHTT--CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcchhhccChHHHHHHHHHHHHH-------HHcC--CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 44599999999999887665542 1111 234578999999999999999999999974 888998766443
Q ss_pred ccccc-------------------------------------------------hHHHHHHHHHHHHh---------cCC
Q 001227 891 KWFGE-------------------------------------------------GEKYVKAVFSLASK---------IAP 912 (1119)
Q Consensus 891 ~~~G~-------------------------------------------------~e~~I~~lF~~A~k---------~~P 912 (1119)
.+.+. ....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 32221 12334444444432 126
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec-----------CCCCCCcHHHHhccccc
Q 001227 913 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-----------NRPFDLDEAVVRRLPRR 981 (1119)
Q Consensus 913 sILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTT-----------N~p~~Ld~aLlrRF~~~ 981 (1119)
+||||||+|.+. ....+.|+..++.. ..+++++++. |.+..+++++++||..
T Consensus 191 ~vl~IDEi~~l~------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~- 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI- 253 (368)
T ss_dssp CEEEEESGGGSB------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-
T ss_pred ceEEEhhccccC------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-
Confidence 899999999882 12233344443332 2345555554 3578899999999965
Q ss_pred cccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCC
Q 001227 982 LMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASP 1060 (1119)
Q Consensus 982 I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~ 1060 (1119)
+.++.|+.+++.++++..+...... ++..++.++..+.+.+++++.++|+.|+..|..+
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~-------------------- 313 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR-------------------- 313 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT--------------------
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--------------------
Confidence 8999999999999999988775433 5566888999988668899999999988766442
Q ss_pred CCCCCCccccccHHHHHHHHHHh
Q 001227 1061 PLYSSVDVRPLKMDDFKYAHEQV 1083 (1119)
Q Consensus 1061 ~~~~~~~~r~Lt~eDF~~Al~kv 1083 (1119)
....|+.+|++.|++.+
T Consensus 314 ------~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 314 ------KGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp ------TCSSBCHHHHHHHHHHS
T ss_pred ------CCCCCCHHHHHHHHHHh
Confidence 22579999999999874
No 43
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.72 E-value=2.4e-16 Score=176.95 Aligned_cols=200 Identities=19% Similarity=0.243 Sum_probs=143.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 893 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~ 893 (1119)
.+|++++|.+..++.+...+...... ..++.++||+||||||||++|+++|+.++.+|+.++++.+..
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~---------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 93 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKR---------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK--- 93 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHT---------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS---
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhc---------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc---
Confidence 48999999999999999988642210 234568999999999999999999999999999999876531
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhcc--------CCcccCCccEEEEEecC
Q 001227 894 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--------GLRTKDKERVLVLAATN 965 (1119)
Q Consensus 894 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ld--------gl~~k~~~~VlVIaTTN 965 (1119)
...+..++.. ...+++|||||||.+. ...+..+..+++.....+- .... ...++++|++||
T Consensus 94 ---~~~~~~~~~~--~~~~~vl~lDEi~~l~-----~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~atn 162 (338)
T 3pfi_A 94 ---SGDLAAILTN--LSEGDILFIDEIHRLS-----PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI-DLPKFTLIGATT 162 (338)
T ss_dssp ---HHHHHHHHHT--CCTTCEEEEETGGGCC-----HHHHHHHHHHHHTSCC---------CCCCCC-CCCCCEEEEEES
T ss_pred ---hhHHHHHHHh--ccCCCEEEEechhhcC-----HHHHHHHHHHHHhccchhhcccCccccceec-CCCCeEEEEeCC
Confidence 2233333332 2357999999999882 2223333333322211110 0000 112589999999
Q ss_pred CCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001227 966 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 966 ~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~a 1037 (1119)
....+++++++||+..+.++.|+.+++..+++.++...... ++..++.++..+.| +.+++.++++.+...+
T Consensus 163 ~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 163 RAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFA 234 (338)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHH
T ss_pred CccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998875543 45567788886665 5578888887765443
No 44
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.71 E-value=3e-17 Score=179.34 Aligned_cols=181 Identities=22% Similarity=0.259 Sum_probs=129.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCC
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 928 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~-s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 928 (1119)
.++.++||+||||||||++|+++|+.++.+|+.+++++.. +...+.....++.+|..+....++||||||||.|++.+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 4557899999999999999999999999999999987622 111122235678899999888889999999999976543
Q ss_pred CC-chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH-HHHhccccccccCCCCHHHHHHHHHHHHhhcccC
Q 001227 929 NP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA 1006 (1119)
Q Consensus 929 s~-~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~-aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~ 1006 (1119)
.. ..+ ..+++.+...+++... ...+++||+|||.++.+++ .+.+||...+.+ |+..+|.+|...+..... .
T Consensus 142 ~~~~~~---~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~--p~l~~r~~i~~i~~~~~~-~ 214 (272)
T 1d2n_A 142 IGPRFS---NLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIATGEQLLEALELLGN-F 214 (272)
T ss_dssp TTTBCC---HHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTTTSSEEEEC--CCEEEHHHHHHHHHHHTC-S
T ss_pred CChhHH---HHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhcccceEEcC--CCccHHHHHHHHHHhcCC-C
Confidence 21 122 2344444444554432 2467899999999988887 567799765554 666666666665544433 3
Q ss_pred ChhcHHHHHHHcCCC----cHHHHHHHHHHHHhhh
Q 001227 1007 SDVDLEGIANMADGY----SGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 1007 ~d~dl~~LA~~TeGy----sg~DL~~L~~~Aa~~a 1037 (1119)
++.++..++..+.|| +.+++.++++.|...+
T Consensus 215 ~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 215 KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD 249 (272)
T ss_dssp CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc
Confidence 567789999999997 5677777777765433
No 45
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.70 E-value=6.7e-17 Score=182.19 Aligned_cols=218 Identities=18% Similarity=0.271 Sum_probs=166.6
Q ss_pred CccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc-CCeEEEE
Q 001227 315 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF-SARLLIV 393 (1119)
Q Consensus 315 ~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f-~a~LL~l 393 (1119)
+..+++|+++.-+ +..|..|.++.-.+++++++ |.. .....+.|||.||+|| ...+||||+|+++ +++++.+
T Consensus 5 ~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~--~~~-~~~~~~~iLL~GppGt--GKT~la~ala~~~~~~~~~~i 77 (322)
T 1xwi_A 5 ERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHL--FTG-KRTPWRGILLFGPPGT--GKSYLAKAVATEANNSTFFSI 77 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHHHHHHHCGGG--SCT-TCCCCSEEEEESSSSS--CHHHHHHHHHHHTTSCEEEEE
T ss_pred cCCCCCHHHhcCH--HHHHHHHHHHHHHHHhCHHH--HhC-CCCCCceEEEECCCCc--cHHHHHHHHHHHcCCCcEEEE
Confidence 3457899998877 99999999999889999887 433 2345678999999999 7999999999998 7776666
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce
Q 001227 394 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 473 (1119)
Q Consensus 394 Ds~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 473 (1119)
+...+.+.+.
T Consensus 78 ~~~~l~~~~~---------------------------------------------------------------------- 87 (322)
T 1xwi_A 78 SSSDLVSKWL---------------------------------------------------------------------- 87 (322)
T ss_dssp ECCSSCCSSC----------------------------------------------------------------------
T ss_pred EhHHHHhhhh----------------------------------------------------------------------
Confidence 5533322100
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001227 474 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 553 (1119)
Q Consensus 474 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 553 (1119)
| .
T Consensus 88 ---g---------------------------------------------------------------------------~ 89 (322)
T 1xwi_A 88 ---G---------------------------------------------------------------------------E 89 (322)
T ss_dssp ---C---------------------------------------------------------------------------S
T ss_pred ---h---------------------------------------------------------------------------H
Confidence 0 0
Q ss_pred hHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcC---CCCEEEEeeccCCCcccccC
Q 001227 554 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL---PSNVVVIGSHTQLDSRKEKS 622 (1119)
Q Consensus 554 ~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~--------~~~~~~l~~~L~~L---~g~vvvIgs~~~~d~~k~k~ 622 (1119)
....+..+|+.+.. .+|.||||||+|.+.... .++.+.|...++.+ .++|+|||++|
T Consensus 90 ~~~~~~~lf~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn--------- 157 (322)
T 1xwi_A 90 SEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATN--------- 157 (322)
T ss_dssp CHHHHHHHHHHHHH---TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEES---------
T ss_pred HHHHHHHHHHHHHh---cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecC---------
Confidence 11245666776665 789999999999964421 23344455555554 46899999999
Q ss_pred CCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHHhhhhhhhhccc
Q 001227 623 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQS 702 (1119)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~e~~Lpd~~gR~ 702 (1119)
.|+.+++ +++|||++.+++++|+...|.
T Consensus 158 ---------------------~~~~ld~-------------------------------al~rRf~~~i~i~~P~~~~r~ 185 (322)
T 1xwi_A 158 ---------------------IPWVLDS-------------------------------AIRRRFEKRIYIPLPEPHARA 185 (322)
T ss_dssp ---------------------CTTTSCH-------------------------------HHHHTCCEEEECCCCCHHHHH
T ss_pred ---------------------CcccCCH-------------------------------HHHhhcCeEEEeCCcCHHHHH
Confidence 5555665 888899888999999999999
Q ss_pred chhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhc
Q 001227 703 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 751 (1119)
Q Consensus 703 ~Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~ 751 (1119)
+|++.|.......+++.+++.||..|.||+|+||+.+|+.|...++.+.
T Consensus 186 ~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 186 AMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKV 234 (322)
T ss_dssp HHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999986544445688999999999999999999999999999998764
No 46
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.66 E-value=1.1e-15 Score=169.87 Aligned_cols=202 Identities=20% Similarity=0.229 Sum_probs=143.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 893 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~ 893 (1119)
.+|++++|.+..++.+.+.+..... . ..++.++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKA-------R--KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHH-------H--CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHc-------c--CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 4789999999999999887763111 0 124468999999999999999999999999999999877532
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCccc-------CCccEEEEEecCC
Q 001227 894 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNR 966 (1119)
Q Consensus 894 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k-------~~~~VlVIaTTN~ 966 (1119)
...+...|..+ ...+++|||||||.+. ...+..+..+++.....+-+-... ...++++|++||.
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLS-----RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCC-----HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccc-----cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 12233333321 1356899999999883 222333333333322111100000 1135789999999
Q ss_pred CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001227 967 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 967 p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~a 1037 (1119)
+..+++++.+||+..+.++.|+.+++.++++.++...... ++..++.|+..+.|+ ++.+.++++.+...+
T Consensus 148 ~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 148 PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVRDFA 218 (324)
T ss_dssp CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHTTTS
T ss_pred cccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence 9999999999998899999999999999999998765433 455678888888764 578888888876554
No 47
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.66 E-value=2.6e-16 Score=179.62 Aligned_cols=229 Identities=19% Similarity=0.273 Sum_probs=160.8
Q ss_pred HHHHHHhcccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001227 303 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 382 (1119)
Q Consensus 303 ~~~~l~~~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakAL 382 (1119)
+++.+...| ..+.-.++|+++..+ +..|..|..+...+++++++. .. .....+.|||.||+|| -..+||||+
T Consensus 33 ~~~~~~~~~-~~~~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~--~~-~~~~~~~iLL~GppGt--GKT~la~al 104 (355)
T 2qp9_X 33 LRGALSSAI-LSEKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLF--KG-NRKPTSGILLYGPPGT--GKSYLAKAV 104 (355)
T ss_dssp ---------------CCCGGGSCCG--GGHHHHHHHHTHHHHHCGGGG--CS-SCCCCCCEEEECSTTS--CHHHHHHHH
T ss_pred HHHHHhhhh-cccCCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHH--hc-CCCCCceEEEECCCCC--cHHHHHHHH
Confidence 344444333 345668999998766 899999999998899998873 33 3345678999999999 799999999
Q ss_pred HhhcCCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 001227 383 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 462 (1119)
Q Consensus 383 A~~f~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 462 (1119)
|++++++++.++...+.+.
T Consensus 105 a~~~~~~~~~v~~~~l~~~------------------------------------------------------------- 123 (355)
T 2qp9_X 105 ATEANSTFFSVSSSDLVSK------------------------------------------------------------- 123 (355)
T ss_dssp HHHHTCEEEEEEHHHHHSC-------------------------------------------------------------
T ss_pred HHHhCCCEEEeeHHHHhhh-------------------------------------------------------------
Confidence 9999988887754322110
Q ss_pred cccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCccccccc
Q 001227 463 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 542 (1119)
Q Consensus 463 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~ 542 (1119)
|+|.
T Consensus 124 ------------~~g~---------------------------------------------------------------- 127 (355)
T 2qp9_X 124 ------------WMGE---------------------------------------------------------------- 127 (355)
T ss_dssp ------------C-------------------------------------------------------------------
T ss_pred ------------hcch----------------------------------------------------------------
Confidence 0000
Q ss_pred ccccCCCcchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----C----hhhHHHHHHHHhcC---CCCEEEEee
Q 001227 543 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENL---PSNVVVIGS 611 (1119)
Q Consensus 543 ~~~d~~~~~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~----~----~~~~~~l~~~L~~L---~g~vvvIgs 611 (1119)
....+..+|+.+.. ..|.||||||+|.+... . .++.+.|...|+.+ ..+|+|||+
T Consensus 128 -----------~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~a 193 (355)
T 2qp9_X 128 -----------SEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 193 (355)
T ss_dssp -----------CHHHHHHHHHHHHH---TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEE
T ss_pred -----------HHHHHHHHHHHHHH---cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEee
Confidence 01235566666655 78999999999995432 1 23344455555554 458999999
Q ss_pred ccCCCcccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHH
Q 001227 612 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 691 (1119)
Q Consensus 612 ~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~ 691 (1119)
+| .|+.+++ +++|||++.+
T Consensus 194 tn------------------------------~~~~ld~-------------------------------al~rRf~~~i 212 (355)
T 2qp9_X 194 TN------------------------------IPWQLDS-------------------------------AIRRRFERRI 212 (355)
T ss_dssp ES------------------------------CGGGSCH-------------------------------HHHHTCCEEE
T ss_pred cC------------------------------CcccCCH-------------------------------HHHcccCEEE
Confidence 99 4444554 7888888888
Q ss_pred hhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhc
Q 001227 692 ERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 751 (1119)
Q Consensus 692 e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~ 751 (1119)
++++|+...|..|++.|.......+++.+++.||..+.||+|+||+.+|..|...|+.+.
T Consensus 213 ~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 213 YIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888886533334678899999999999999999999999999999763
No 48
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.65 E-value=2.2e-16 Score=179.98 Aligned_cols=223 Identities=20% Similarity=0.290 Sum_probs=148.4
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc-cccc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-WFGE 895 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k-~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~-~~G~ 895 (1119)
.|+|++.+++.+...+.....+...... .....++.++||+||||||||++|++||+.++.+|+.++|+.+... ++|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3689999999999888543322211110 1223356789999999999999999999999999999999987643 6776
Q ss_pred h-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCc--hhHHHHHHHHhhhhhccCCcc---------c------
Q 001227 896 G-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRT---------K------ 953 (1119)
Q Consensus 896 ~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~s~~--~~~~l~~ll~~Ll~~ldgl~~---------k------ 953 (1119)
. ...+..+|..+ ....++||||||||.+...+.+.. .......+.+.|+..+++... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55677777766 444579999999999976654322 111223356666666663210 0
Q ss_pred --CCccEEEEEecCCC----------CC-----------------------------------CcHHHHhccccccccCC
Q 001227 954 --DKERVLVLAATNRP----------FD-----------------------------------LDEAVVRRLPRRLMVNL 986 (1119)
Q Consensus 954 --~~~~VlVIaTTN~p----------~~-----------------------------------Ld~aLlrRF~~~I~v~l 986 (1119)
...++++|++++.. .. +.++++.||+.++.+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 11334555555431 11 78999999999999999
Q ss_pred CCHHHHHHHHHH----HHhh-------ccc---CChhcHHHHHHH--cCCCcHHHHHHHHHHHHhhhHHH
Q 001227 987 PDAPNREKIIRV----ILAK-------EEL---ASDVDLEGIANM--ADGYSGSDLKNLCVTAAHCPIRE 1040 (1119)
Q Consensus 987 Pd~eeR~eILk~----ll~k-------~~l---~~d~dl~~LA~~--TeGysg~DL~~L~~~Aa~~airr 1040 (1119)
|+.+++.+|+.. ++.. ... .++..++.|+.. ...+..++|+++++.+...++.+
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 999999998886 3322 111 134446666653 34566688888888777665543
No 49
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=3.3e-16 Score=188.52 Aligned_cols=231 Identities=19% Similarity=0.246 Sum_probs=150.7
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-----
Q 001227 816 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS----- 890 (1119)
Q Consensus 816 fddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s----- 890 (1119)
.++++|+++++..+.+.+....... ..+...+||+||||||||+||++||..++.++..+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~--------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK--------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS--------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc--------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 4569999999999987665322111 124568999999999999999999999999999999876433
Q ss_pred ----ccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCccc-----------CC
Q 001227 891 ----KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----------DK 955 (1119)
Q Consensus 891 ----~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k-----------~~ 955 (1119)
.+.|.....+...|..+....| ||||||||.+...+.. ...+.|+..++..... +.
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 3455555667777887766665 9999999998643221 1233444444422110 11
Q ss_pred ccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh-----cccC------ChhcHHHHHHHcC-CCcH
Q 001227 956 ERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EELA------SDVDLEGIANMAD-GYSG 1023 (1119)
Q Consensus 956 ~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k-----~~l~------~d~dl~~LA~~Te-Gysg 1023 (1119)
.++++|+|||.++.+++++++|| .++.++.|+.+++.+|++.++.. ..+. ++..+..++.... ..+.
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred cceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 56899999999999999999999 57899999999999999987632 1211 2344555555333 3456
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhc
Q 001227 1024 SDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1024 ~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~ 1084 (1119)
++|++.+..++..+..+.+.. ......|+.+|+.+++..-.
T Consensus 302 R~L~~~i~~~~~~aa~~~~~~--------------------~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVAE--------------------ERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--------------------CCSCCEECTTTTHHHHCSCC
T ss_pred hHHHHHHHHHHHHHHHHHHhc--------------------CCcceecCHHHHHHHhCCcc
Confidence 777777766665544443210 11235688999999886543
No 50
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.65 E-value=2.9e-16 Score=176.40 Aligned_cols=219 Identities=19% Similarity=0.244 Sum_probs=168.0
Q ss_pred CccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 315 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 315 ~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
+.-+++|+++.-+ +..|..|..+...+++++++.+ .. ....+.|||.||+|| ...+||||+|++.+++++.++
T Consensus 11 ~~~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~--~~-~~~~~~vLl~GppGt--GKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 11 EKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFK--GN-RKPTSGILLYGPPGT--GKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHTHHHHHCGGGCC--TT-CCCCCEEEEECSSSS--CHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCHHHhcCh--HHHHHHHHHHHHHHHhCHHHHh--cC-CCCCCeEEEECCCCC--cHHHHHHHHHHHHCCCEEEEc
Confidence 4557899998776 9999999999988998887743 22 334678999999999 799999999999988887775
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001227 395 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 474 (1119)
Q Consensus 395 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 474 (1119)
.+.+.+.
T Consensus 84 ~~~l~~~------------------------------------------------------------------------- 90 (322)
T 3eie_A 84 SSDLVSK------------------------------------------------------------------------- 90 (322)
T ss_dssp HHHHHTT-------------------------------------------------------------------------
T ss_pred hHHHhhc-------------------------------------------------------------------------
Confidence 4222110
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhh
Q 001227 475 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 554 (1119)
Q Consensus 475 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 554 (1119)
|....
T Consensus 91 ---------------------------------------------------------------------------~~g~~ 95 (322)
T 3eie_A 91 ---------------------------------------------------------------------------WMGES 95 (322)
T ss_dssp ---------------------------------------------------------------------------TGGGH
T ss_pred ---------------------------------------------------------------------------ccchH
Confidence 00011
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC---CCCEEEEeeccCCCcccccCC
Q 001227 555 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL---PSNVVVIGSHTQLDSRKEKSH 623 (1119)
Q Consensus 555 k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L---~g~vvvIgs~~~~d~~k~k~~ 623 (1119)
...+..+|+.+.. .+|.||||||+|.+... ..++.+.+...|+.+ .++|+|||++|
T Consensus 96 ~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn---------- 162 (322)
T 3eie_A 96 EKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATN---------- 162 (322)
T ss_dssp HHHHHHHHHHHHH---TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES----------
T ss_pred HHHHHHHHHHHHh---cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecC----------
Confidence 2345667777766 78999999999996542 234445555566544 56899999999
Q ss_pred CCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHHhhhhhhhhcccc
Q 001227 624 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSN 703 (1119)
Q Consensus 624 ~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~e~~Lpd~~gR~~ 703 (1119)
.|+.+++ +++|||++.+++++|+...|.+
T Consensus 163 --------------------~~~~ld~-------------------------------al~~Rf~~~i~~~~p~~~~r~~ 191 (322)
T 3eie_A 163 --------------------IPWQLDS-------------------------------AIRRRFERRIYIPLPDLAARTT 191 (322)
T ss_dssp --------------------CGGGSCH-------------------------------HHHHHCCEEEECCCCCHHHHHH
T ss_pred --------------------ChhhCCH-------------------------------HHHcccCeEEEeCCCCHHHHHH
Confidence 4445554 8888998889999999999999
Q ss_pred hhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcC
Q 001227 704 IISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 752 (1119)
Q Consensus 704 Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~ 752 (1119)
|++.|.......+++.+++.|+..+.||+|+||+.+|+.|...++.+..
T Consensus 192 il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 192 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp HHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999865444456888999999999999999999999999999998753
No 51
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.63 E-value=3e-14 Score=147.19 Aligned_cols=184 Identities=22% Similarity=0.243 Sum_probs=129.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 887 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~ 887 (1119)
...|++++|.+..++.+.+.+.. ....++||+||+|||||++|+++++.+ ...++.+++..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT--------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 35788999999999999988763 122359999999999999999999886 46688888765
Q ss_pred cccccccchHHHHHHHHHHHH------hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001227 888 ITSKWFGEGEKYVKAVFSLAS------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 961 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A~------k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVI 961 (1119)
.... ..+...+.... ...+.||||||+|.+.. ... +.+...++. ...++.+|
T Consensus 79 ~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----~~~-------~~l~~~l~~----~~~~~~~i 136 (226)
T 2chg_A 79 ERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----DAQ-------AALRRTMEM----YSKSCRFI 136 (226)
T ss_dssp TTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----HHH-------HHHHHHHHH----TTTTEEEE
T ss_pred ccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----HHH-------HHHHHHHHh----cCCCCeEE
Confidence 4321 12222222222 24578999999998831 111 222222222 12457888
Q ss_pred EecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 001227 962 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 962 aTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa 1034 (1119)
++||.+..+++++.+||. .+.++.|+.+++.++++.++...... ++..++.++..+.| +.+.+.++++.++
T Consensus 137 ~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 899999999999999996 88999999999999999988765433 45567778887766 4455555555443
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.62 E-value=1.7e-14 Score=162.98 Aligned_cols=203 Identities=19% Similarity=0.182 Sum_probs=138.6
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEec
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISM 885 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---------g~~fi~V~~ 885 (1119)
.+++++|.+..++.+...+...+. ...+.+++|+||||||||++|+++++.+ +.+++.++|
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 346899999999999887653211 1244689999999999999999999988 889999998
Q ss_pred Ccccccc----------------ccc-hHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhc
Q 001227 886 SSITSKW----------------FGE-GEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 947 (1119)
Q Consensus 886 s~L~s~~----------------~G~-~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~l 947 (1119)
....+.. .+. .......++..+... .|.||||||+|.+...+ ..+ .++..++..+
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~----~~l~~l~~~~ 159 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQ----DLLYRITRIN 159 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THH----HHHHHHHHGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCC----hHHHhHhhch
Confidence 7633211 111 223344555554433 37899999999984321 012 2334444333
Q ss_pred cCCcccCCccEEEEEecCCC---CCCcHHHHhcccc-ccccCCCCHHHHHHHHHHHHhh--c-ccCChhcHHHHHHHcC-
Q 001227 948 DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK--E-ELASDVDLEGIANMAD- 1019 (1119)
Q Consensus 948 dgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~-~I~v~lPd~eeR~eILk~ll~k--~-~l~~d~dl~~LA~~Te- 1019 (1119)
..... ..++.+|++||.+ +.+++.+.+||.. .+.+++|+.+++.+|++..+.. . ...++..++.++..+.
T Consensus 160 ~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (387)
T 2v1u_A 160 QELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAR 237 (387)
T ss_dssp GCC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHS
T ss_pred hhcCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 32210 3568899999887 7889999999975 8999999999999999998865 1 1224455778888887
Q ss_pred --CCcHHHHHHHHHHHHhhh
Q 001227 1020 --GYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 1020 --Gysg~DL~~L~~~Aa~~a 1037 (1119)
|. ++.+.+++..|+..+
T Consensus 238 ~~G~-~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 238 EHGD-ARRALDLLRVAGEIA 256 (387)
T ss_dssp SSCC-HHHHHHHHHHHHHHH
T ss_pred hccC-HHHHHHHHHHHHHHH
Confidence 64 556777777776544
No 53
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.61 E-value=1.2e-14 Score=170.70 Aligned_cols=199 Identities=17% Similarity=0.248 Sum_probs=133.8
Q ss_pred CCCccccc-Cc--HHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 001227 813 GVTFDDIG-AL--ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 884 (1119)
Q Consensus 813 ~~sfddI~-G~--e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~ 884 (1119)
..+|++++ |. ......+...... .+ . +.+++|+||||+|||+||++|++++ +.+++.++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~----------~~--~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKH----------PG--R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHS----------TT--S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhC----------CC--C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 45898866 53 3334444443331 11 1 3579999999999999999999988 88999999
Q ss_pred cCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 001227 885 MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 964 (1119)
Q Consensus 885 ~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTT 964 (1119)
+..+...+.+.........|.......+.||||||++.+.+.+ ..++.+..+++.+. .....+||++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---~~q~~l~~~l~~l~---------~~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---GVQTELFHTFNELH---------DSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---HHHHHHHHHHHHHH---------TTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEEC
Confidence 8876544333222111223444444468999999999985321 22333333443332 12345666666
Q ss_pred CCCCC---CcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001227 965 NRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 965 N~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~a 1037 (1119)
+.+.. +++.+++||. ..+.++.|+.++|.+|++..+....+. ++..++.|+..+.| +.+++.++++.+...+
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 65654 8899999995 789999999999999999988765432 44457889988876 6788888888776554
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.60 E-value=4e-14 Score=149.24 Aligned_cols=205 Identities=17% Similarity=0.126 Sum_probs=138.0
Q ss_pred CCCcccccC---cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 813 GVTFDDIGA---LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 813 ~~sfddI~G---~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
..+|+++++ ...+.+.+...+.. .+..++||+||||||||++|+++++++ +.+++.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG--------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT--------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 357888776 34666666665542 134689999999999999999999887 4789999988
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccE-EEEEecC
Q 001227 887 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV-LVLAATN 965 (1119)
Q Consensus 887 ~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~V-lVIaTTN 965 (1119)
++....... +.. ...+.+|||||++.+.... ..+..+..+++.+.. ...+ +|++++.
T Consensus 90 ~~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~---~~~~~l~~~l~~~~~---------~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LEG--LEQFDLICIDDVDAVAGHP---LWEEAIFDLYNRVAE---------QKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GTT--GGGSSEEEEETGGGGTTCH---HHHHHHHHHHHHHHH---------HCSCEEEEEESS
T ss_pred HHHHHHHHH--------HHh--ccCCCEEEEeccccccCCH---HHHHHHHHHHHHHHH---------cCCCeEEEEcCC
Confidence 765443211 111 1346899999999883211 112333333333221 1223 4444444
Q ss_pred CCC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHH
Q 001227 966 RPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1039 (1119)
Q Consensus 966 ~p~---~Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~air 1039 (1119)
.+. .+++.+.+||. ..+.++.|+.+++.+++..++...... ++..++.++..+.| +.+++.++++.+...+..
T Consensus 148 ~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 148 SPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp CTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 443 45688999985 789999999999999999998765443 45567888888866 677888888877665432
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHH
Q 001227 1040 EILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHE 1081 (1119)
Q Consensus 1040 rlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~ 1081 (1119)
+ .+.|+.+|++++++
T Consensus 227 ~---------------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 227 H---------------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp H---------------------------TCCCCHHHHHHHHT
T ss_pred h---------------------------CCCCcHHHHHHHhh
Confidence 1 14699999998874
No 55
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.60 E-value=9.2e-15 Score=172.02 Aligned_cols=182 Identities=23% Similarity=0.365 Sum_probs=131.4
Q ss_pred CCcccccCcHHHH---HHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001227 814 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 890 (1119)
Q Consensus 814 ~sfddI~G~e~ik---~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s 890 (1119)
.+|++++|++.++ ..|...+.. . ...++||+||||||||++|++|++.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------~----~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------G----HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------T----CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------C----CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 5789999999998 677776652 1 12589999999999999999999999999999987542
Q ss_pred ccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec--
Q 001227 891 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 964 (1119)
Q Consensus 891 ~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTT-- 964 (1119)
....++.+|..+.. ..++||||||||.+... ..+.|+..++. ..+++|++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT------TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhc------CceEEEecCCC
Confidence 23456666666553 35799999999988311 12233333332 335666655
Q ss_pred CCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc-------cc-CChhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001227 965 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------EL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1036 (1119)
Q Consensus 965 N~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~-------~l-~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~ 1036 (1119)
|....+++++++||. ++.+..|+.+++..+++.++... .+ .++..++.|+..+.| +.+++.++++.|+..
T Consensus 144 n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 144 NPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADM 221 (447)
T ss_dssp CGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred CcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 555689999999994 78899999999999999998761 11 245567888888766 455677777766543
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.60 E-value=1.2e-15 Score=154.17 Aligned_cols=158 Identities=22% Similarity=0.368 Sum_probs=113.9
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 883 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V 883 (1119)
..|++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred ccccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 4688999999999988887642 234689999999999999999999986 7889999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001227 884 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 960 (1119)
Q Consensus 884 ~~s~L~--s~~~G~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlV 960 (1119)
++..+. ..+.+.....+..++..+.+ ..+.||||||+|.+...+....... ...++..++ + ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-~~~~l~~~~---~------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD-AGNMLKPAL---A------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC-CHHHHHHHH---H------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH-HHHHHHHhh---c------cCCeEE
Confidence 987765 23445556677778876644 4578999999999964432111111 111222222 1 145778
Q ss_pred EEecCCCC-----CCcHHHHhccccccccCCCCHHHHHHHH
Q 001227 961 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKII 996 (1119)
Q Consensus 961 IaTTN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eIL 996 (1119)
|++||.+. .+++++.+||. .+.++.|+.++|.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 88888765 78999999996 6899999999998875
No 57
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.60 E-value=3.2e-14 Score=148.40 Aligned_cols=184 Identities=24% Similarity=0.275 Sum_probs=131.6
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 879 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~-------------- 879 (1119)
..|++++|.+..++.|.+.+.. ...+..++|+||+|+|||++|+++++.++..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4688999999999999887752 1233579999999999999999999887432
Q ss_pred ----------EEEEecCccccccccchHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhh
Q 001227 880 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 945 (1119)
Q Consensus 880 ----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~ 945 (1119)
++.++... ......+..++..+. ...+.+|||||+|.+- . ...+.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------~----~~~~~l~~ 148 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------R----HSFNALLK 148 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------H----HHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------H----HHHHHHHH
Confidence 22222211 112234555555443 2347899999999872 1 12233333
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHH
Q 001227 946 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1024 (1119)
Q Consensus 946 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~ 1024 (1119)
.++.. ..++.+|++|+.+..+++.+.+|+ ..+.++.|+.++..++++.++...... ++..++.++..+.| +++
T Consensus 149 ~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 149 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp HHHSC----CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhcC----CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHH
Confidence 33322 356888999998889999999997 678999999999999999988765432 45567889999977 677
Q ss_pred HHHHHHHHHH
Q 001227 1025 DLKNLCVTAA 1034 (1119)
Q Consensus 1025 DL~~L~~~Aa 1034 (1119)
.+.++++.|+
T Consensus 223 ~~~~~~~~~~ 232 (250)
T 1njg_A 223 DALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.60 E-value=1e-14 Score=161.21 Aligned_cols=215 Identities=15% Similarity=0.214 Sum_probs=140.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 891 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~--- 891 (1119)
+++|++.+++.+...+....... ....+|..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~-----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGL-----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTC-----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCC-----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 57899999999988776421100 0112344579999999999999999999998 567999999875432
Q ss_pred --cccchHH----H-HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 001227 892 --WFGEGEK----Y-VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 964 (1119)
Q Consensus 892 --~~G~~e~----~-I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTT 964 (1119)
++|.... . ...+.........+||||||+|.+ +...+..+..+++.............-.++++|+||
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 1111000 0 012222333344589999999988 222222222222221110000000111367899999
Q ss_pred CC--------------------------CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc----------cCCh
Q 001227 965 NR--------------------------PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----------LASD 1008 (1119)
Q Consensus 965 N~--------------------------p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~----------l~~d 1008 (1119)
|. ...+++++++||+..+.+.+|+.+++..|++.++.+.. ..++
T Consensus 168 n~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 247 (311)
T 4fcw_A 168 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTE 247 (311)
T ss_dssp STTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECH
T ss_pred ccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCH
Confidence 98 44688899999999999999999999999999886521 1244
Q ss_pred hcHHHHHHHcC--CCcHHHHHHHHHHHHhhhHHHHH
Q 001227 1009 VDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREIL 1042 (1119)
Q Consensus 1009 ~dl~~LA~~Te--Gysg~DL~~L~~~Aa~~airrll 1042 (1119)
..++.|+...- .++.++|+++++.+...+..+.+
T Consensus 248 ~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 248 AAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp HHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 55777777665 57889999999999887776643
No 59
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.59 E-value=1.3e-15 Score=179.00 Aligned_cols=229 Identities=19% Similarity=0.301 Sum_probs=158.8
Q ss_pred HHHHHHhcccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001227 303 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 382 (1119)
Q Consensus 303 ~~~~l~~~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakAL 382 (1119)
+.+.+.+.|+ .+...++|+++.-+ +..|..|.++.-.+++++++ |.. .....+.|||.||+|| ...+||||+
T Consensus 116 ~~~~~~~~i~-~~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~--~~~-~~~~~~~vLL~GppGt--GKT~lA~ai 187 (444)
T 2zan_A 116 LQNQLQGAIV-IERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHL--FTG-KRTPWRGILLFGPPGT--GKSYLAKAV 187 (444)
T ss_dssp --------CB-CCCCCCCGGGSCSC--HHHHHHHHHHHTHHHHCTTT--TSG-GGCCCSEEEEECSTTS--SHHHHHHHH
T ss_pred HHHHhhccee-ccCCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHH--hhc-cCCCCceEEEECCCCC--CHHHHHHHH
Confidence 3444444444 45668999998776 89999999998888988877 332 2234578999999999 799999999
Q ss_pred Hhhc-CCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccc
Q 001227 383 AKHF-SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 461 (1119)
Q Consensus 383 A~~f-~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 461 (1119)
|+++ +++++.++.+.+.+.
T Consensus 188 a~~~~~~~~~~v~~~~l~~~------------------------------------------------------------ 207 (444)
T 2zan_A 188 ATEANNSTFFSISSSDLVSK------------------------------------------------------------ 207 (444)
T ss_dssp HHHCCSSEEEEECCC-----------------------------------------------------------------
T ss_pred HHHcCCCCEEEEeHHHHHhh------------------------------------------------------------
Confidence 9998 777766665333221
Q ss_pred ccccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccc
Q 001227 462 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 541 (1119)
Q Consensus 462 ~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~ 541 (1119)
|+|..
T Consensus 208 -------------~~g~~-------------------------------------------------------------- 212 (444)
T 2zan_A 208 -------------WLGES-------------------------------------------------------------- 212 (444)
T ss_dssp -----------------C--------------------------------------------------------------
T ss_pred -------------hcchH--------------------------------------------------------------
Confidence 11100
Q ss_pred cccccCCCcchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----C----hhhHHHHHHHHhcC---CCCEEEEe
Q 001227 542 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENL---PSNVVVIG 610 (1119)
Q Consensus 542 ~~~~d~~~~~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~----~----~~~~~~l~~~L~~L---~g~vvvIg 610 (1119)
...+..+|+.+.. .+|.||||||+|.+... . .++.+.|...|+.+ .++|+|||
T Consensus 213 -------------~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 213 -------------EKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp -------------CCTHHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred -------------HHHHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 0023455666655 78999999999996442 1 12333333333333 45899999
Q ss_pred eccCCCcccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHH
Q 001227 611 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 690 (1119)
Q Consensus 611 s~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q 690 (1119)
++| .|+.+++ +++|||++.
T Consensus 277 atn------------------------------~~~~ld~-------------------------------al~rRf~~~ 295 (444)
T 2zan_A 277 ATN------------------------------IPWVLDS-------------------------------AIRRRFEKR 295 (444)
T ss_dssp EES------------------------------CGGGSCH-------------------------------HHHTTCCEE
T ss_pred cCC------------------------------CccccCH-------------------------------HHHhhcceE
Confidence 999 4444554 788888888
Q ss_pred HhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhc
Q 001227 691 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 751 (1119)
Q Consensus 691 ~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~ 751 (1119)
+++++|+...|..|++.|..-....+++.+++.||..+.||+|+||+.+|+.|...++.+.
T Consensus 296 i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 296 IYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888886433334578899999999999999999999999999998764
No 60
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.59 E-value=1.8e-14 Score=168.80 Aligned_cols=180 Identities=24% Similarity=0.368 Sum_probs=132.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccc-
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE- 895 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s-~~~G~- 895 (1119)
+|+|++++++.|...+..+++++.++.......+++++||+||||||||++|+++|..++.+|+.++++.+.. .|.|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 6899999999999999887777766654433345689999999999999999999999999999999988877 47874
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 001227 896 GEKYVKAVFSLAS------------------------------------------------------------------- 908 (1119)
Q Consensus 896 ~e~~I~~lF~~A~------------------------------------------------------------------- 908 (1119)
.+..++.+|..|.
T Consensus 96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEE
Confidence 5666666665441
Q ss_pred -----------------------------------------------------------------------hc-CCeEEE
Q 001227 909 -----------------------------------------------------------------------KI-APSVVF 916 (1119)
Q Consensus 909 -----------------------------------------------------------------------k~-~PsILf 916 (1119)
+. ..+|||
T Consensus 176 ~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~ 255 (444)
T 1g41_A 176 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 255 (444)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred cCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCeee
Confidence 00 235899
Q ss_pred EccccccccCCCCCchhHHHHHHHHhhhhhccCCcc------cCCccEEEEEec----CCCCCCcHHHHhccccccccCC
Q 001227 917 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNL 986 (1119)
Q Consensus 917 IDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~v~l 986 (1119)
+||||.+.....+....-...-+.+.|+..+++... -+..++++|+|. +.+.++-+.++.||+.++.++.
T Consensus 256 ~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~ 335 (444)
T 1g41_A 256 IDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 335 (444)
T ss_dssp EETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCC
T ss_pred HHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCC
Confidence 999999975433222222222355666666665321 134678999987 3455566899999998899999
Q ss_pred CCHHHHHHHHH
Q 001227 987 PDAPNREKIIR 997 (1119)
Q Consensus 987 Pd~eeR~eILk 997 (1119)
++.++..+|+.
T Consensus 336 lt~~e~~~Il~ 346 (444)
T 1g41_A 336 LSAADFERILT 346 (444)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999983
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.59 E-value=1.2e-14 Score=181.05 Aligned_cols=225 Identities=18% Similarity=0.288 Sum_probs=157.8
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 883 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V 883 (1119)
..|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|..+ +..++.+
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred CCCCCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 4688999999999988886652 234689999999999999999999987 6678888
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001227 884 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 961 (1119)
Q Consensus 884 ~~s~L~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVI 961 (1119)
++..+. ..+.|..+..++.+|..+....++||||||+|.+++.............++..+ + ....+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~---l------~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL---L------SSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC---S------SSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH---H------hCCCeEEE
Confidence 887766 356788889999999999888889999999999987654322222222222222 1 12567888
Q ss_pred EecCCC-----CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc----cc-CChhcHHHHHHHcCCC-----cHHHH
Q 001227 962 AATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGY-----SGSDL 1026 (1119)
Q Consensus 962 aTTN~p-----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~----~l-~~d~dl~~LA~~TeGy-----sg~DL 1026 (1119)
++|+.+ ..+++++.+||. .+.++.|+.++|.+||+.+.... .+ ..+..+..++..+.+| .+..+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 888864 357889999996 79999999999999999887652 22 2344566677666543 44566
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHHhc
Q 001227 1027 KNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1027 ~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~ 1084 (1119)
..++.+|+..+..+ + .......++.+|+..++.++.
T Consensus 399 i~lld~a~~~~~~~-------------------~---~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 399 IDVIDEAGARARLM-------------------P---VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHS-------------------S---SCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcc-------------------c---ccccCCccCHHHHHHHHHHhc
Confidence 67776665322110 0 001224578888888887754
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.58 E-value=1.9e-14 Score=161.46 Aligned_cols=167 Identities=20% Similarity=0.274 Sum_probs=100.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------c------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------N------ 879 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------~------ 879 (1119)
..+|++++|.+.+++.+...... ....++||+||||||||++|+++++.++. +
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~--------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCchhccChHHHHHHHHHHhhC--------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46899999999987765443321 11236999999999999999999998862 2
Q ss_pred --------------------EEEEecCccccccccchHHHHHHHHHHH---------HhcCCeEEEEccccccccCCCCC
Q 001227 880 --------------------FINISMSSITSKWFGEGEKYVKAVFSLA---------SKIAPSVVFVDEVDSMLGRRENP 930 (1119)
Q Consensus 880 --------------------fi~V~~s~L~s~~~G~~e~~I~~lF~~A---------~k~~PsILfIDEID~L~~~r~s~ 930 (1119)
++.+.........+|.. .+...+..+ ....++||||||||.+- .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~-----~ 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE-----D 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----H
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-----H
Confidence 22111111011111110 011122222 11136899999999882 2
Q ss_pred chhHHHHHHHHhhh--hhccCCcccCCccEEEEEecCCCC-CCcHHHHhccccccccCCC-CHHHHHHHHHHHH
Q 001227 931 GEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLP-DAPNREKIIRVIL 1000 (1119)
Q Consensus 931 ~~~~~l~~ll~~Ll--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~v~lP-d~eeR~eILk~ll 1000 (1119)
..+..+..+++.-. ....+.....+.++++|+|||... .+++++++||+..+.++.| +.++|.+|++..+
T Consensus 159 ~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 159 HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHH
Confidence 22333333333211 111111111124799999999754 8999999999888999988 5777778887743
No 63
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.58 E-value=6e-14 Score=157.07 Aligned_cols=196 Identities=19% Similarity=0.220 Sum_probs=133.3
Q ss_pred CCCccccc-C--cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 813 GVTFDDIG-A--LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 813 ~~sfddI~-G--~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
..+|++++ | .......+...+..+ .....+++|+||||||||+||+++++.+ +.+++.+++.
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENL------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTT------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCc------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 46788876 3 444555555554421 1134679999999999999999999998 8999999998
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001227 887 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 966 (1119)
Q Consensus 887 ~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~ 966 (1119)
++...+.+.........|..... .+.||||||++.+.+.+ ..++.+..+++.+. .....+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---~~~~~l~~~l~~~~---------~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---RTQIEFFHIFNTLY---------LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---HHHHHHHHHHHHHH---------HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEecCC
Confidence 76554443332222223333332 47899999999984211 12333333333332 1134577777777
Q ss_pred CC---CCcHHHHhccc--cccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 001227 967 PF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1036 (1119)
Q Consensus 967 p~---~Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~ 1036 (1119)
+. .+++++.+||. ..+.+++ +.++|.+|++..+....+. ++..++.|+..+ | +.+++.++++.+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 65 68899999996 5678888 9999999999998765443 455688899998 4 567888888777655
No 64
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.58 E-value=1e-14 Score=163.55 Aligned_cols=164 Identities=21% Similarity=0.204 Sum_probs=110.7
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc-cc-cccc
Q 001227 816 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-IT-SKWF 893 (1119)
Q Consensus 816 fddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~-L~-s~~~ 893 (1119)
+++++|.+.+++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.. +. ....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred ccceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 45788999999888776541 147999999999999999999999999999998742 11 1111
Q ss_pred cchH-HHHHHHHHHHHhcC---CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC-
Q 001227 894 GEGE-KYVKAVFSLASKIA---PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF- 968 (1119)
Q Consensus 894 G~~e-~~I~~lF~~A~k~~---PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~- 968 (1119)
|... ......| ..... .+||||||++.+ ++..+..+...+++....+.+.....+.+++||+|+|+.+
T Consensus 90 g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~-----~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~ 162 (331)
T 2r44_A 90 GTMIYNQHKGNF--EVKKGPVFSNFILADEVNRS-----PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQ 162 (331)
T ss_dssp EEEEEETTTTEE--EEEECTTCSSEEEEETGGGS-----CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCC
T ss_pred CceeecCCCCce--EeccCcccccEEEEEccccC-----CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcc
Confidence 1100 0000000 00111 279999999987 2233444444444433333333323345788899988653
Q ss_pred ----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhh
Q 001227 969 ----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 969 ----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
.+++++++||...+.++.|+.++|.+|++..+..
T Consensus 163 ~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 163 EGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 3899999999878999999999999999998765
No 65
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=4.7e-14 Score=160.12 Aligned_cols=194 Identities=19% Similarity=0.226 Sum_probs=134.6
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----------CCcEEEEec
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----------GANFINISM 885 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-----------g~~fi~V~~ 885 (1119)
++++|.++.++.+.+.+...+. ...+.+++|+||||||||++|+++++++ +.+++.++|
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 5799999999999887763221 2244689999999999999999999987 899999998
Q ss_pred Cccc-cc----------c-------ccc-hHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhh
Q 001227 886 SSIT-SK----------W-------FGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 946 (1119)
Q Consensus 886 s~L~-s~----------~-------~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ 946 (1119)
.... .. . .+. ....+..++..+....+ ||||||+|.+..... +.. ++..++..
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~----~~~---~l~~l~~~ 161 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG----GDI---VLYQLLRS 161 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT----SHH---HHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC----Cce---eHHHHhcC
Confidence 6543 10 0 011 13334555555544443 999999999853221 111 12333222
Q ss_pred ccCCcccCCccEEEEEecCCC---CCCcHHHHhccccccccCCCCHHHHHHHHHHHHhh---cccCChhcHHHHHHHcC-
Q 001227 947 WDGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMAD- 1019 (1119)
Q Consensus 947 ldgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k---~~l~~d~dl~~LA~~Te- 1019 (1119)
. .++.+|++||.+ +.+++.+.+||...+.+++|+.++..++++..+.. ....++..++.++..+.
T Consensus 162 ~--------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 162 D--------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp S--------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred C--------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 1 468899999876 67899999999789999999999999999998864 12234455778888876
Q ss_pred --CCcHHHHHHHHHHHHhhh
Q 001227 1020 --GYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 1020 --Gysg~DL~~L~~~Aa~~a 1037 (1119)
| ..+.+.++++.|+..+
T Consensus 234 ~~G-~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 234 EHG-DARKAVNLLFRAAQLA 252 (384)
T ss_dssp TCC-CHHHHHHHHHHHHHHT
T ss_pred ccC-CHHHHHHHHHHHHHHh
Confidence 4 3445666777665443
No 66
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=2.7e-14 Score=159.60 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=130.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 893 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~ 893 (1119)
.+|++++|.+++++.|.+.+.. ...+..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK-------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT-------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 5799999999999999988762 23445688899999999999999999999999999987632
Q ss_pred cchHHHHHHHHHHHHhc-----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 894 GEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 894 G~~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
...++..+..+... .+.||||||+|.+.+ ...+..+.++++.. ..++.+|++||.+.
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----~~~~~~L~~~le~~-----------~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----AESQRHLRSFMEAY-----------SSNCSIIITANNID 147 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----HHHHHHHHHHHHHH-----------GGGCEEEEEESSGG
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----HHHHHHHHHHHHhC-----------CCCcEEEEEeCCcc
Confidence 33445444443332 468999999998831 11222222222211 24578899999999
Q ss_pred CCcHHHHhccccccccCCCCHHHHHHHHHHHHh-------hcccC-Ch-hcHHHHHHHcCCCcHHHHHHHHHHHH
Q 001227 969 DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA-------KEELA-SD-VDLEGIANMADGYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 969 ~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~-------k~~l~-~d-~dl~~LA~~TeGysg~DL~~L~~~Aa 1034 (1119)
.+++++++|| ..+.|+.|+.++|.++++.++. ...+. ++ ..++.++..+.|.... +.+.++.++
T Consensus 148 ~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~-a~~~L~~~~ 220 (324)
T 3u61_B 148 GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK-TIGELDSYS 220 (324)
T ss_dssp GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH-HHHHHHHHG
T ss_pred ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH-HHHHHHHHh
Confidence 9999999999 5799999999998776655443 22322 34 5678888888776554 444444443
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.57 E-value=9.1e-15 Score=172.90 Aligned_cols=182 Identities=20% Similarity=0.304 Sum_probs=130.2
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 883 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V 883 (1119)
..|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 4688999999999998887752 223589999999999999999999997 7889999
Q ss_pred ecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 001227 884 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 963 (1119)
Q Consensus 884 ~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaT 963 (1119)
+++ ..+.|..+..++.+|..+....++||||| . . .. ..+.|+..+. ...+.+|++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~-----~---~~----a~~~L~~~L~------~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A-----A---ID----ASNILKPSLA------RGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC----C--------------------CCCTT------SSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----C-----c---hh----HHHHHHHhhc------CCCEEEEec
Confidence 887 55667777788999999998889999999 0 1 11 1122222221 356899999
Q ss_pred cCCCC-----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhc----cc-CChhcHHHHHHHcCCCc-----HHHHHH
Q 001227 964 TNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGYS-----GSDLKN 1028 (1119)
Q Consensus 964 TN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~----~l-~~d~dl~~LA~~TeGys-----g~DL~~ 1028 (1119)
||..+ .+++++.+||. .+.|+.|+.+++.+|++.++... .+ .++..+..++..+.+|. +.....
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 99886 68999999996 59999999999999999887662 22 24556777777776554 346666
Q ss_pred HHHHHHh
Q 001227 1029 LCVTAAH 1035 (1119)
Q Consensus 1029 L~~~Aa~ 1035 (1119)
++..|+.
T Consensus 377 ll~~a~~ 383 (468)
T 3pxg_A 377 LIDEAGS 383 (468)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 68
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=162.76 Aligned_cols=246 Identities=17% Similarity=0.184 Sum_probs=161.1
Q ss_pred cccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001227 317 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 396 (1119)
Q Consensus 317 ~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~ 396 (1119)
-+|+|++.--+ ++.|..|..+...++++++.-+- -++....+ |||.||+|| ...+|+||||...+..++.++..
T Consensus 5 ~~~~~~di~g~--~~~~~~l~~~i~~~~~~~~~l~~-~~l~~~~G-vlL~Gp~Gt--GKTtLakala~~~~~~~i~i~g~ 78 (274)
T 2x8a_A 5 PNVTWADIGAL--EDIREELTMAILAPVRNPDQFKA-LGLVTPAG-VLLAGPPGC--GKTLLAKAVANESGLNFISVKGP 78 (274)
T ss_dssp -------CCHH--HHHHHHHHHHHTHHHHSHHHHHH-TTCCCCSE-EEEESSTTS--CHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHH-cCCCCCCe-EEEECCCCC--cHHHHHHHHHHHcCCCEEEEEcH
Confidence 46889998777 99999999988888888765321 13433333 999999999 79999999999998887777654
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceeee
Q 001227 397 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 476 (1119)
Q Consensus 397 ~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~ 476 (1119)
.+...+..
T Consensus 79 ~l~~~~~~------------------------------------------------------------------------ 86 (274)
T 2x8a_A 79 ELLNMYVG------------------------------------------------------------------------ 86 (274)
T ss_dssp TTCSSTTH------------------------------------------------------------------------
T ss_pred HHHhhhhh------------------------------------------------------------------------
Confidence 43321110
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhhHH
Q 001227 477 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 556 (1119)
Q Consensus 477 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k~ 556 (1119)
..+.
T Consensus 87 ----------------------------------------------------------------------------~~~~ 90 (274)
T 2x8a_A 87 ----------------------------------------------------------------------------ESER 90 (274)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 0111
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC--CCCEEEEeeccCCCcccccCCCCC
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGG 626 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L--~g~vvvIgs~~~~d~~k~k~~~~~ 626 (1119)
.+..+|+.... ..|.|+||+|++.+... ..+..+.+-..|+.. ...+++++++|
T Consensus 91 ~i~~vf~~a~~---~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn------------- 154 (274)
T 2x8a_A 91 AVRQVFQRAKN---SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATN------------- 154 (274)
T ss_dssp HHHHHHHHHHH---TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEES-------------
T ss_pred HHHHHHHHHHh---cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecC-------------
Confidence 23333443333 56777777777764321 123333344444433 23789999999
Q ss_pred ceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccch
Q 001227 627 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 704 (1119)
Q Consensus 627 ~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~I 704 (1119)
.|+.+|+ |++| ||++++++++|+...|.+|
T Consensus 155 -----------------~p~~LD~-------------------------------al~r~gRfd~~i~~~~P~~~~r~~i 186 (274)
T 2x8a_A 155 -----------------RPDIIDP-------------------------------AILRPGRLDKTLFVGLPPPADRLAI 186 (274)
T ss_dssp -----------------CGGGSCH-------------------------------HHHSTTSSCEEEECCSCCHHHHHHH
T ss_pred -----------------ChhhCCH-------------------------------hhcCcccCCeEEEeCCcCHHHHHHH
Confidence 4444554 9998 9999999999999999999
Q ss_pred hHHHHHh-hhCCC-CcccchhhhcccC--CCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhh
Q 001227 705 ISIRSVL-SRNGL-DCVDLESLCIKDQ--TLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQS 780 (1119)
Q Consensus 705 l~IhT~l-~~~~l-~~~~L~~LA~~tk--g~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~a~~ 780 (1119)
+++|+.- ...++ .+++++.||..+. ||+|+||+.+|++|+..|+.+....... ......+.+...||+.++.
T Consensus 187 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~----~~~~~~~~i~~~df~~al~ 262 (274)
T 2x8a_A 187 LKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS----GNEKGELKVSHKHFEEAFK 262 (274)
T ss_dssp HHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC---------------CCBCHHHHHHHHT
T ss_pred HHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc----cccccCCeecHHHHHHHHH
Confidence 9999753 22333 6889999999865 9999999999999999999865432111 1112334577888888877
Q ss_pred hhhh
Q 001227 781 ESKS 784 (1119)
Q Consensus 781 eik~ 784 (1119)
.++|
T Consensus 263 ~~~p 266 (274)
T 2x8a_A 263 KVRS 266 (274)
T ss_dssp TCCC
T ss_pred HhcC
Confidence 7766
No 69
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.53 E-value=1.2e-14 Score=172.92 Aligned_cols=270 Identities=18% Similarity=0.261 Sum_probs=169.9
Q ss_pred ccccccccccchhhHHHHHHHhhhhhcccccccc-ccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001227 318 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 396 (1119)
Q Consensus 318 ~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k-~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~ 396 (1119)
.++|+++.-. +..+..|.+.....+++++..+ ++ .+..+.|||.||+|| ..++||||+|++.+++++.++..
T Consensus 200 ~~~~~~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~g---~~~~~~vLL~GppGt--GKT~lAraia~~~~~~fv~vn~~ 272 (489)
T 3hu3_A 200 EVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGP 272 (489)
T ss_dssp CCCGGGCCSC--HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCEEEEECSTTS--SHHHHHHHHHHHCSSEEEEEEHH
T ss_pred CCCHHHcCCH--HHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCcEEEECcCCC--CHHHHHHHHHHHhCCCEEEEEch
Confidence 3678876665 7778888888777788876532 22 234567999999999 79999999999999988887743
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceeee
Q 001227 397 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 476 (1119)
Q Consensus 397 ~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~ 476 (1119)
.+.+.+.
T Consensus 273 ~l~~~~~------------------------------------------------------------------------- 279 (489)
T 3hu3_A 273 EIMSKLA------------------------------------------------------------------------- 279 (489)
T ss_dssp HHHTSCT-------------------------------------------------------------------------
T ss_pred Hhhhhhc-------------------------------------------------------------------------
Confidence 2221100
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhhHH
Q 001227 477 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 556 (1119)
Q Consensus 477 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k~ 556 (1119)
| ...-
T Consensus 280 g---------------------------------------------------------------------------~~~~ 284 (489)
T 3hu3_A 280 G---------------------------------------------------------------------------ESES 284 (489)
T ss_dssp T---------------------------------------------------------------------------HHHH
T ss_pred c---------------------------------------------------------------------------hhHH
Confidence 0 0011
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhccC----h----hhHHHHHHHHhcC--CCCEEEEeeccCCCcccccCCCCC
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLTGN----N----DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGG 626 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~----~----~~~~~l~~~L~~L--~g~vvvIgs~~~~d~~k~k~~~~~ 626 (1119)
.+..+|+.+.. ..|.||||||+|.+.... . ++.+.|...|+.+ ..+|+||++||+
T Consensus 285 ~~~~~f~~A~~---~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~------------ 349 (489)
T 3hu3_A 285 NLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR------------ 349 (489)
T ss_dssp HHHHHHHHHHH---TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC------------
T ss_pred HHHHHHHHHHh---cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC------------
Confidence 23445555555 679999999999965532 2 3444555555544 458999999993
Q ss_pred ceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccch
Q 001227 627 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 704 (1119)
Q Consensus 627 ~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~I 704 (1119)
|+.+++ +++| ||.+.+++++|+...|.+|
T Consensus 350 ------------------~~~Ld~-------------------------------al~r~gRf~~~i~i~~P~~~eR~~I 380 (489)
T 3hu3_A 350 ------------------PNSIDP-------------------------------ALRRFGRFDREVDIGIPDATGRLEI 380 (489)
T ss_dssp ------------------GGGBCG-------------------------------GGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred ------------------ccccCH-------------------------------HHhCCCcCceEEEeCCCCHHHHHHH
Confidence 333443 5555 7777777888888888888
Q ss_pred hHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCC-Ccc-cccccchhhhHHHHHhhhhh
Q 001227 705 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKL-KISTESIMYGLNILQGIQSE 781 (1119)
Q Consensus 705 l~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~-~kl-~id~~si~~~~~df~~a~~e 781 (1119)
+++|+. ..++ .+.+++.++..+.||++++|+.||..|...++.+..+.+... ..+ ......+.+...+|..++.+
T Consensus 381 L~~~~~--~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~ 458 (489)
T 3hu3_A 381 LQIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458 (489)
T ss_dssp HHHHTT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTS
T ss_pred HHHHHh--cCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHh
Confidence 888753 2233 677899999999999999999999999999998765543221 111 11123345677888888777
Q ss_pred hhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHH
Q 001227 782 SKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENV 825 (1119)
Q Consensus 782 ik~~~~slk~iv~~~e~~k~ll~~vip~~e~~~sfddI~G~e~i 825 (1119)
++|.. +.++. ..-+.++|+||||+...
T Consensus 459 ~~ps~--~re~~---------------~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 459 SNPSA--LRETV---------------VEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp HHHHH--HHGGG---------------C----------------
T ss_pred CCchh--hhccc---------------ccCCCCCHHHcCCCccc
Confidence 66532 11111 11236899999998653
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.53 E-value=1.4e-14 Score=146.38 Aligned_cols=150 Identities=21% Similarity=0.411 Sum_probs=107.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 883 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V 883 (1119)
..|++++|.+...+.+.+.+.. ....++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred cccchhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 4688999999988888876642 224689999999999999999999987 7888888
Q ss_pred ecCcccc--ccccchHHHHHHHHHHHHhc-CCeEEEEccccccccCCC-CCchhHHHHHHHHhhhhhccCCcccCCccEE
Q 001227 884 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRE-NPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 959 (1119)
Q Consensus 884 ~~s~L~s--~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~-s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~Vl 959 (1119)
++..+.. .+.+.....+..++..+... .|.||||||+|.+.+.+. ....... ...+..++ + ..+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~-~~~l~~~~---~------~~~~~ 154 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDA-GNILKPML---A------RGELR 154 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCT-HHHHHHHH---H------TTCSC
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHH-HHHHHHHH---h------cCCee
Confidence 8876542 23455566677788777665 678999999999974433 1111111 11222222 1 14578
Q ss_pred EEEecCCCC-----CCcHHHHhccccccccCCCC
Q 001227 960 VLAATNRPF-----DLDEAVVRRLPRRLMVNLPD 988 (1119)
Q Consensus 960 VIaTTN~p~-----~Ld~aLlrRF~~~I~v~lPd 988 (1119)
+|++||.+. .+++++++||. .+.++.|+
T Consensus 155 ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 155 CIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 888888764 68999999997 48888885
No 71
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.52 E-value=5.3e-14 Score=160.98 Aligned_cols=223 Identities=19% Similarity=0.257 Sum_probs=132.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhh----------------cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFC----------------KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 881 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~----------------k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi 881 (1119)
.++|++.+++.|...+..++.+..... ..+...+..++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999988754333322110 0112345578999999999999999999999999999
Q ss_pred EEecCccc-cccccch-HHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCchh--HHHHHHHHhhhhhccCCc--
Q 001227 882 NISMSSIT-SKWFGEG-EKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEH--EAMRKMKNEFMVNWDGLR-- 951 (1119)
Q Consensus 882 ~V~~s~L~-s~~~G~~-e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~~~--~~l~~ll~~Ll~~ldgl~-- 951 (1119)
.+++..+. ..++|.. +..+..++..+. ...++||||||||.+...+...... .....+.+.|+..+++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998865 3444543 445556655432 3367999999999996543221100 000113444444444321
Q ss_pred --c-------------cCCccEEEEEecCC-----------------------------------------CCCCcHHHH
Q 001227 952 --T-------------KDKERVLVLAATNR-----------------------------------------PFDLDEAVV 975 (1119)
Q Consensus 952 --~-------------k~~~~VlVIaTTN~-----------------------------------------p~~Ld~aLl 975 (1119)
. -...++++|+++|. ...+.+++.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 01144677777762 113568888
Q ss_pred hccccccccCCCCHHHHHHHHHH----HHhh---------ccc-CChhcHHHHHHHcC--CCcHHHHHHHHHHHHhhhHH
Q 001227 976 RRLPRRLMVNLPDAPNREKIIRV----ILAK---------EEL-ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIR 1039 (1119)
Q Consensus 976 rRF~~~I~v~lPd~eeR~eILk~----ll~k---------~~l-~~d~dl~~LA~~Te--Gysg~DL~~L~~~Aa~~air 1039 (1119)
+||+.++.|+.++.++..+|+.. ++.. ..+ .++..++.|+.... ....+.|.++++.++..++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 89988899999999988888862 2221 011 13444566666543 34567777777777665544
Q ss_pred H
Q 001227 1040 E 1040 (1119)
Q Consensus 1040 r 1040 (1119)
+
T Consensus 342 ~ 342 (376)
T 1um8_A 342 D 342 (376)
T ss_dssp T
T ss_pred h
Confidence 3
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=8.9e-13 Score=149.46 Aligned_cols=200 Identities=15% Similarity=0.086 Sum_probs=136.6
Q ss_pred cccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCc--eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccc
Q 001227 816 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK--GILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT 889 (1119)
Q Consensus 816 fddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~--gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s~L~ 889 (1119)
+++++|.++.++.+.+.+...+. + .++. .++|+||||||||+++++++..+ +.+++.++|....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~-------~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR-------N---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH-------S---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-------C---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 46899999999999887763211 1 1223 79999999999999999999998 6789999986533
Q ss_pred cc--c--------------cc-chHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCc
Q 001227 890 SK--W--------------FG-EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 951 (1119)
Q Consensus 890 s~--~--------------~G-~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~ 951 (1119)
.. . .+ ........+...... ..|.||||||+|.+ + . ..+..+...+....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----~---~----~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----A---P----DILSTFIRLGQEAD 153 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----C---H----HHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----c---h----HHHHHHHHHHHhCC
Confidence 21 0 01 112223333333333 34789999999987 1 1 22333333333322
Q ss_pred ccCCccEEEEEecCCC---CCCcHHHHhcccc-ccccCCCCHHHHHHHHHHHHhh---cccCChhcHHHHHHHc------
Q 001227 952 TKDKERVLVLAATNRP---FDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMA------ 1018 (1119)
Q Consensus 952 ~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~-~I~v~lPd~eeR~eILk~ll~k---~~l~~d~dl~~LA~~T------ 1018 (1119)
.....++.+|++||.+ ..+++.+.+||.. .+.+++++.++..++++..+.. ....++..++.++..+
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccC
Confidence 1111468889998877 6788999999865 7899999999999999998865 2234566688899988
Q ss_pred ---CCCcHHHHHHHHHHHHhhhH
Q 001227 1019 ---DGYSGSDLKNLCVTAAHCPI 1038 (1119)
Q Consensus 1019 ---eGysg~DL~~L~~~Aa~~ai 1038 (1119)
.| ..+.+.++++.|+..+.
T Consensus 234 ~~~~G-~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 234 DTNRG-DARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CTTSC-CHHHHHHHHHHHHHHHH
T ss_pred CCCCC-cHHHHHHHHHHHHHHHH
Confidence 44 45677788888776553
No 73
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=3.8e-13 Score=151.61 Aligned_cols=201 Identities=16% Similarity=0.211 Sum_probs=135.4
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecCcc
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSI 888 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el------g~~fi~V~~s~L 888 (1119)
.+++++|.+..++.|.+.+...+. ...+..++|+||+|||||+|++++++.+ +.+++.++|...
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 456899999999999886653111 1234689999999999999999999988 889999997542
Q ss_pred cc------c----------cccc-hHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCC
Q 001227 889 TS------K----------WFGE-GEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 950 (1119)
Q Consensus 889 ~s------~----------~~G~-~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl 950 (1119)
.. . ..+. .......++..+.... |.||+|||++.+...... .++..++..++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~--------~~l~~l~~~~~~~ 159 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND--------DILYKLSRINSEV 159 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS--------THHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC--------HHHHHHhhchhhc
Confidence 11 0 0111 2333555555555444 899999999998543211 1233333333332
Q ss_pred cccCCccEEEEEecCCC---CCCcHHHHhccc-cccccCCCCHHHHHHHHHHHHhhc---ccCChhcHHHHHHHcC---C
Q 001227 951 RTKDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMAD---G 1020 (1119)
Q Consensus 951 ~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~v~lPd~eeR~eILk~ll~k~---~l~~d~dl~~LA~~Te---G 1020 (1119)
...++.+|++|+.+ ..+++.+.+||. ..+.+++++.++..++++..+... ...++..++.++..+. |
T Consensus 160 ---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 160 ---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp ---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred ---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 23568888888876 467788888885 489999999999999999887642 1234455677777776 5
Q ss_pred CcHHHHHHHHHHHHhhh
Q 001227 1021 YSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 1021 ysg~DL~~L~~~Aa~~a 1037 (1119)
. +..+.++|..|+..+
T Consensus 237 ~-~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 237 D-ARRALDLLRVSGEIA 252 (386)
T ss_dssp C-HHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHH
Confidence 4 455666777776544
No 74
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.51 E-value=1.5e-13 Score=151.37 Aligned_cols=258 Identities=16% Similarity=0.196 Sum_probs=171.3
Q ss_pred HHHHHhcccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHH
Q 001227 304 KDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALA 383 (1119)
Q Consensus 304 ~~~l~~~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA 383 (1119)
.+.+.+.+++ +.-.++|+++--+ +..+..|..+...++++++.. . .+....+.|||.||+|| ...+||||+|
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~--~-~~~~~~~~vll~Gp~Gt--GKT~la~~la 75 (297)
T 3b9p_A 4 VQLILDEIVE-GGAKVEWTDIAGQ--DVAKQALQEMVILPSVRPELF--T-GLRAPAKGLLLFGPPGN--GKTLLARAVA 75 (297)
T ss_dssp HHHHHTTTBC-CSSCCCGGGSCCC--HHHHHHHHHHTHHHHHCGGGS--C-GGGCCCSEEEEESSSSS--CHHHHHHHHH
T ss_pred HHHHHHHhcc-CCCCCCHHHhCCh--HHHHHHHHHHHHhhhhCHHHH--h-cCCCCCCeEEEECcCCC--CHHHHHHHHH
Confidence 3444555554 3467899997765 899999999988888877752 2 34455789999999999 7999999999
Q ss_pred hhcCCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccc
Q 001227 384 KHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSK 463 (1119)
Q Consensus 384 ~~f~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 463 (1119)
+.++.+++-++...+.+.+.
T Consensus 76 ~~~~~~~~~i~~~~l~~~~~------------------------------------------------------------ 95 (297)
T 3b9p_A 76 TECSATFLNISAASLTSKYV------------------------------------------------------------ 95 (297)
T ss_dssp HHTTCEEEEEESTTTSSSSC------------------------------------------------------------
T ss_pred HHhCCCeEEeeHHHHhhccc------------------------------------------------------------
Confidence 99888776665432221100
Q ss_pred ccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccc
Q 001227 464 NYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSL 543 (1119)
Q Consensus 464 ~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~ 543 (1119)
|
T Consensus 96 -------------~------------------------------------------------------------------ 96 (297)
T 3b9p_A 96 -------------G------------------------------------------------------------------ 96 (297)
T ss_dssp -------------S------------------------------------------------------------------
T ss_pred -------------c------------------------------------------------------------------
Confidence 0
Q ss_pred cccCCCcchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC-----CCEEEEe
Q 001227 544 RLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIG 610 (1119)
Q Consensus 544 ~~d~~~~~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L~-----g~vvvIg 610 (1119)
...-.+..+|+.+.. .+|.||||||+|.++.. ..+..+.|...++.++ .+|+||+
T Consensus 97 ---------~~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~ 164 (297)
T 3b9p_A 97 ---------DGEKLVRALFAVARH---MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLA 164 (297)
T ss_dssp ---------CHHHHHHHHHHHHHH---TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEE
T ss_pred ---------hHHHHHHHHHHHHHH---cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEe
Confidence 001134455565555 78999999999996552 2344445556666664 4699999
Q ss_pred eccCCCcccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHH
Q 001227 611 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 690 (1119)
Q Consensus 611 s~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q 690 (1119)
++| .|+.+++ +++|||...
T Consensus 165 ~tn------------------------------~~~~l~~-------------------------------~l~~R~~~~ 183 (297)
T 3b9p_A 165 ATN------------------------------RPQELDE-------------------------------AALRRFTKR 183 (297)
T ss_dssp EES------------------------------CGGGBCH-------------------------------HHHHHCCEE
T ss_pred ecC------------------------------ChhhCCH-------------------------------HHHhhCCeE
Confidence 999 3333443 666666666
Q ss_pred HhhhhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhh
Q 001227 691 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMY 770 (1119)
Q Consensus 691 ~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~ 770 (1119)
+++++|+...|..|++.+.......+++.+++.|+..+.||++++|+.+|+.|...++.+......+. + .......+
T Consensus 184 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~--~-~~~~~~~i 260 (297)
T 3b9p_A 184 VYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKC--L-DISAMRAI 260 (297)
T ss_dssp EECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-----------CCCCCCC
T ss_pred EEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhccc--c-cccccCCc
Confidence 66667776667777766654333356778899999999999999999999999999987654321111 0 11112235
Q ss_pred hHHHHHhhhhhhhh
Q 001227 771 GLNILQGIQSESKS 784 (1119)
Q Consensus 771 ~~~df~~a~~eik~ 784 (1119)
...+|..+...+++
T Consensus 261 ~~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 261 TEQDFHSSLKRIRR 274 (297)
T ss_dssp CHHHHHHHTTSCCC
T ss_pred CHHHHHHHHHHcCC
Confidence 66777766655544
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=4.7e-14 Score=178.18 Aligned_cols=199 Identities=22% Similarity=0.323 Sum_probs=132.8
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 883 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V 883 (1119)
..|++++|.++.+..+.+.+.. +..+++||+||||||||++|+++|+.+ +.+++.+
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCCcccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 4688999999988888886642 233579999999999999999999987 8899999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001227 884 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 960 (1119)
Q Consensus 884 ~~s~L~--s~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlV 960 (1119)
+++.+. ..+.|+.+..++.+|..+... .|.||||||+|.+.+.....+..... .++..++ . ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~-~~L~~~l---~------~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAG-NMLKPAL---A------RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHH---H------TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHH-HHHHHHH---h------CCCeEE
Confidence 998876 456788888999999999875 68999999999997554332222222 1222222 1 245778
Q ss_pred EEecCCCC----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcc----c-CChhcHHHHHHHcC-----CCcHHHH
Q 001227 961 LAATNRPF----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMAD-----GYSGSDL 1026 (1119)
Q Consensus 961 IaTTN~p~----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~----l-~~d~dl~~LA~~Te-----Gysg~DL 1026 (1119)
|++||.++ .+++++.+||. .+.++.|+.+++.+|++.++.... + ..+..+..++..+. .|.+...
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHH
Confidence 88888663 57899999997 499999999999999998876431 1 13445666666554 4566677
Q ss_pred HHHHHHHHhhh
Q 001227 1027 KNLCVTAAHCP 1037 (1119)
Q Consensus 1027 ~~L~~~Aa~~a 1037 (1119)
..++.+|+...
T Consensus 382 i~lldea~a~~ 392 (854)
T 1qvr_A 382 IDLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 76
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.51 E-value=5.9e-15 Score=164.39 Aligned_cols=216 Identities=19% Similarity=0.274 Sum_probs=152.6
Q ss_pred ccccccccccccchhhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 316 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 316 ~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
.-.++|+++--+ +.+|..|.++.-..+++++.. +++ -...+.|||.||+|| ...+||||||+..+++++.++
T Consensus 9 ~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~---~~~~~~vLL~Gp~Gt--GKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 9 VPQVTWEDIGGL--EDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGC--GKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHC---CCCCSEEEEECSSSS--SHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcC---CCCCceEEEECCCCc--CHHHHHHHHHHHhCCCEEEEE
Confidence 456899997666 899999999888788887652 332 234567999999999 799999999999998887776
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001227 395 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 474 (1119)
Q Consensus 395 s~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 474 (1119)
...+.+ +
T Consensus 82 ~~~l~~-------------------------------------------------------------------------~ 88 (301)
T 3cf0_A 82 GPELLT-------------------------------------------------------------------------M 88 (301)
T ss_dssp HHHHHH-------------------------------------------------------------------------H
T ss_pred hHHHHh-------------------------------------------------------------------------h
Confidence 321110 0
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhh
Q 001227 475 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 554 (1119)
Q Consensus 475 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 554 (1119)
|+|..
T Consensus 89 ~~g~~--------------------------------------------------------------------------- 93 (301)
T 3cf0_A 89 WFGES--------------------------------------------------------------------------- 93 (301)
T ss_dssp HHTTC---------------------------------------------------------------------------
T ss_pred hcCch---------------------------------------------------------------------------
Confidence 11100
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc-----------ChhhHHHHHHHHhcC--CCCEEEEeeccCCCccccc
Q 001227 555 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----------NNDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEK 621 (1119)
Q Consensus 555 k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~-----------~~~~~~~l~~~L~~L--~g~vvvIgs~~~~d~~k~k 621 (1119)
...+..+|+.+.. ..|.||||||+|.+... ..+..+.|...|+.+ ..+|+|||+||
T Consensus 94 ~~~~~~~f~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn-------- 162 (301)
T 3cf0_A 94 EANVREIFDKARQ---AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN-------- 162 (301)
T ss_dssp TTHHHHHHHHHHH---TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES--------
T ss_pred HHHHHHHHHHHHh---cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC--------
Confidence 0013445555554 67999999999996531 133455666677765 34899999999
Q ss_pred CCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhh
Q 001227 622 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 699 (1119)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~ 699 (1119)
.|+.+++ +++| ||++.+++++|+..
T Consensus 163 ----------------------~~~~ld~-------------------------------al~r~gRf~~~i~i~~p~~~ 189 (301)
T 3cf0_A 163 ----------------------RPDIIDP-------------------------------AILRPGRLDQLIYIPLPDEK 189 (301)
T ss_dssp ----------------------CGGGSCG-------------------------------GGGSTTSSCEEEECCCCCHH
T ss_pred ----------------------CccccCh-------------------------------HHhcCCccceEEecCCcCHH
Confidence 3444444 5555 66666677777777
Q ss_pred cccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcC
Q 001227 700 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 752 (1119)
Q Consensus 700 gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~ 752 (1119)
.|.+|++.+.. ..++ .+++++.|+..+.||+|+||+.+|..|...|+.+..
T Consensus 190 ~r~~il~~~l~--~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 190 SRVAILKANLR--KSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp HHHHHHHHHHT--TSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--cCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777766643 2233 578899999999999999999999999999987643
No 77
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=3.3e-13 Score=151.38 Aligned_cols=185 Identities=20% Similarity=0.239 Sum_probs=127.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecC
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS 886 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg------~~fi~V~~s 886 (1119)
..+|++++|.+++++.+...+.. .. ..++||+||||||||++|+++++.++ ..++.++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~-------------~~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS-------------AN-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC-------------TT-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc-------------CC-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 35789999999999998887652 11 23599999999999999999998863 468888887
Q ss_pred ccccccccchHHHHHHHHHHHH----------------hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCC
Q 001227 887 SITSKWFGEGEKYVKAVFSLAS----------------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 950 (1119)
Q Consensus 887 ~L~s~~~G~~e~~I~~lF~~A~----------------k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl 950 (1119)
+..+ ...++..+.... ...+.||||||+|.+.. ..+.. ++..++..
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----~~~~~-------Ll~~le~~ 160 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----DAQSA-------LRRTMETY 160 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----HHHHH-------HHHHHHHT
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----HHHHH-------HHHHHHhc
Confidence 6422 112222221111 12346999999998831 12222 22222221
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-CChhcHHHHHHHcCCCcHHHHHHH
Q 001227 951 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNL 1029 (1119)
Q Consensus 951 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l-~~d~dl~~LA~~TeGysg~DL~~L 1029 (1119)
.....+|.+||.+..+.+++++|+. .+.++.|+.++...+++..+....+ .++..++.|+..+.|.. +.+.++
T Consensus 161 ----~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~-r~~~~~ 234 (353)
T 1sxj_D 161 ----SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDL-RRGITL 234 (353)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCH-HHHHHH
T ss_pred ----CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-HHHHHH
Confidence 1346677788999999999999995 7899999999999999998876554 35566888999988754 445555
Q ss_pred HHHHHh
Q 001227 1030 CVTAAH 1035 (1119)
Q Consensus 1030 ~~~Aa~ 1035 (1119)
++.++.
T Consensus 235 l~~~~~ 240 (353)
T 1sxj_D 235 LQSASK 240 (353)
T ss_dssp HHHTHH
T ss_pred HHHHHH
Confidence 555443
No 78
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.4e-13 Score=151.03 Aligned_cols=160 Identities=9% Similarity=0.077 Sum_probs=113.2
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcc
Q 001227 819 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 888 (1119)
Q Consensus 819 I~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V~~s~L 888 (1119)
|.+.++..+.|...+...+. ..++.+++|+||||||||++++++++++ .+.++++||..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~----------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM----------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 45666777777666553221 2345789999999999999999999998 467899999764
Q ss_pred ccc----------c------ccchHHHHHHHHHHH--HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCC
Q 001227 889 TSK----------W------FGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 950 (1119)
Q Consensus 889 ~s~----------~------~G~~e~~I~~lF~~A--~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl 950 (1119)
.+. . .+.....+..+|..+ ....+.||||||+|.|. .+..+ ..++...
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------~q~~L----~~l~~~~--- 157 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------SEKIL----QYFEKWI--- 157 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------CTHHH----HHHHHHH---
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------cchHH----HHHHhcc---
Confidence 432 1 233456778888875 34567899999999995 23333 3333211
Q ss_pred cccCCccEEEEEecCCCCCCc----HHHHhccc-cccccCCCCHHHHHHHHHHHHhhc
Q 001227 951 RTKDKERVLVLAATNRPFDLD----EAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE 1003 (1119)
Q Consensus 951 ~~k~~~~VlVIaTTN~p~~Ld----~aLlrRF~-~~I~v~lPd~eeR~eILk~ll~k~ 1003 (1119)
.....+++||+++|..+..+ +++.+||. .+|.|++++.++..+|++..+...
T Consensus 158 -~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 158 -SSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp -HCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -cccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 11346799999999876543 34566886 679999999999999999988763
No 79
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.50 E-value=4.3e-14 Score=166.51 Aligned_cols=128 Identities=15% Similarity=0.169 Sum_probs=88.4
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEe---------cC---CCCCCcHHHHhcccc
Q 001227 913 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA---------TN---RPFDLDEAVVRRLPR 980 (1119)
Q Consensus 913 sILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaT---------TN---~p~~Ld~aLlrRF~~ 980 (1119)
.|+||||+|.|- ....+.|+..++.- +.+++|++| ++ .++.+++.+++||..
T Consensus 297 ~VliIDEa~~l~------------~~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~ 360 (456)
T 2c9o_A 297 GVLFVDEVHMLD------------IECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360 (456)
T ss_dssp CEEEEESGGGCB------------HHHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhcc----CCCEEEEecCCccccccccccccccccCChhHHhhcce
Confidence 699999999982 23445555555542 234655565 33 267899999999965
Q ss_pred ccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHc-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccC
Q 001227 981 RLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-DGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1058 (1119)
Q Consensus 981 ~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~T-eGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~ 1058 (1119)
+.++.|+.++..++++..+...... ++..+..++..+ .| +++....+++.|...|..+
T Consensus 361 -~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~------------------ 420 (456)
T 2c9o_A 361 -IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKIN------------------ 420 (456)
T ss_dssp -EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHT------------------
T ss_pred -eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhc------------------
Confidence 6999999999999999887654432 455567777777 55 5666666666665444321
Q ss_pred CCCCCCCCccccccHHHHHHHHHHhc
Q 001227 1059 SPPLYSSVDVRPLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1059 ~~~~~~~~~~r~Lt~eDF~~Al~kv~ 1084 (1119)
....|+.+|+..|+..+-
T Consensus 421 --------~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 421 --------GKDSIEKEHVEEISELFY 438 (456)
T ss_dssp --------TCSSBCHHHHHHHHHHSC
T ss_pred --------CCCccCHHHHHHHHHHhc
Confidence 224699999999987653
No 80
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=7.6e-14 Score=166.89 Aligned_cols=200 Identities=18% Similarity=0.208 Sum_probs=127.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhccc-CChhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPL-QRPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 889 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL-~~pelf~k~~l~--~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~ 889 (1119)
..+|++++|.+..++.|.+++.... ..+..|.+.+.. .+++++||+||||||||++|+++|++++++++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 3589999999999999999887422 112222222211 2457899999999999999999999999999999998865
Q ss_pred cccccchH-------HHHHHHHHHH-----HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCcc
Q 001227 890 SKWFGEGE-------KYVKAVFSLA-----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 957 (1119)
Q Consensus 890 s~~~G~~e-------~~I~~lF~~A-----~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~ 957 (1119)
........ ..+..+|..+ ....+.||||||+|.+.... +... +.+...++. .+.+
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~~~l----~~L~~~l~~----~~~~ 181 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----RGGV----GQLAQFCRK----TSTP 181 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----TTHH----HHHHHHHHH----CSSC
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----HHHH----HHHHHHHHh----cCCC
Confidence 43211100 0012233333 22457899999999995432 1111 222222221 1244
Q ss_pred EEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHH
Q 001227 958 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLK 1027 (1119)
Q Consensus 958 VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~ 1027 (1119)
+++|+++.....+.+ +.+| ...+.|+.|+.+++.+++...+....+. ++..++.|+..+.|....-+.
T Consensus 182 iIli~~~~~~~~l~~-l~~r-~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~ 250 (516)
T 1sxj_A 182 LILICNERNLPKMRP-FDRV-CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVIN 250 (516)
T ss_dssp EEEEESCTTSSTTGG-GTTT-SEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHH
T ss_pred EEEEEcCCCCccchh-hHhc-eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 666655544444543 4444 4689999999999999998887765432 445588899998775443333
No 81
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.48 E-value=1.4e-13 Score=171.74 Aligned_cols=183 Identities=20% Similarity=0.290 Sum_probs=130.5
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 883 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----------g~~fi~V 883 (1119)
..|++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 4678999999999999887752 233589999999999999999999997 7888888
Q ss_pred ecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 001227 884 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 963 (1119)
Q Consensus 884 ~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaT 963 (1119)
++ ...+.|+.+..++.+|..+....|+||||| . . . ...+.++..+. ...+.+|++
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------~---~----~~~~~L~~~l~------~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A---I----DASNILKPSLA------RGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C----------------------CCCTT------SSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------c---h----hHHHHHHHHHh------cCCEEEEeC
Confidence 87 445677778889999999999899999999 0 1 0 11122222222 356899999
Q ss_pred cCCCC-----CCcHHHHhccccccccCCCCHHHHHHHHHHHHhhccc-----CChhcHHHHHHHcC-----CCcHHHHHH
Q 001227 964 TNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-----ASDVDLEGIANMAD-----GYSGSDLKN 1028 (1119)
Q Consensus 964 TN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l-----~~d~dl~~LA~~Te-----Gysg~DL~~ 1028 (1119)
||..+ .++++++||| ..+.|+.|+.+++.+||+.+...... .++..+..++..+. ++.+.....
T Consensus 298 t~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 99887 7999999999 56999999999999999988766321 13444666666554 445666667
Q ss_pred HHHHHHhh
Q 001227 1029 LCVTAAHC 1036 (1119)
Q Consensus 1029 L~~~Aa~~ 1036 (1119)
++..|+..
T Consensus 377 ll~~a~~~ 384 (758)
T 3pxi_A 377 LIDEAGSK 384 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 82
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.46 E-value=2.9e-12 Score=144.81 Aligned_cols=201 Identities=22% Similarity=0.248 Sum_probs=133.8
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 893 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~ 893 (1119)
.+|++++|.+.+++.+...+..... . ..++.+++|+||||+|||+||++||..++.++...+++.+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~------~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM------R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH------H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh------c---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 4788999999888888776652110 0 124467999999999999999999999999888776654321
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhc---cCCcc----cCCccEEEEEecCC
Q 001227 894 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW---DGLRT----KDKERVLVLAATNR 966 (1119)
Q Consensus 894 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~l---dgl~~----k~~~~VlVIaTTN~ 966 (1119)
...+..++.. .....|+||||++.+.. ...+.+...+......+ .+... ..-..+.++++|+.
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~ 159 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNK-----AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR 159 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCH-----HHHHHHHHHHHTSCCCC---------------CCCEEEEEESC
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCH-----HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCC
Confidence 1223333322 12458999999998842 11222211111110000 00000 00124677889999
Q ss_pred CCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 001227 967 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 967 p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~a 1037 (1119)
+..|++++++||...+.+++|+.+++.++++.......+. ++..+..||..+.|. ++++.++++.+...+
T Consensus 160 ~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 160 SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRIAIRLTKRVRDML 230 (334)
T ss_dssp GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHHHHHH
Confidence 9999999999998788999999999999999987764433 455578889988875 467777777665544
No 83
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.46 E-value=5e-13 Score=152.52 Aligned_cols=255 Identities=13% Similarity=0.156 Sum_probs=165.6
Q ss_pred HHhcccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001227 307 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 386 (1119)
Q Consensus 307 l~~~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f 386 (1119)
+.+.+++. .-.++|+++-- .+..+..|..+.-..+++++.. . .+....+.|||.||+|| -..+||||+|+..
T Consensus 70 i~~~i~~~-~~~~~~~~i~G--~~~~~~~l~~~i~~~~~~~~~~--~-~~~~~~~~vLl~GppGt--GKT~la~aia~~~ 141 (357)
T 3d8b_A 70 IMNEIMDH-GPPVNWEDIAG--VEFAKATIKEIVVWPMLRPDIF--T-GLRGPPKGILLFGPPGT--GKTLIGKCIASQS 141 (357)
T ss_dssp HHHHTBCC-SCCCCGGGSCS--CHHHHHHHHHHTHHHHHCTTTS--C-GGGSCCSEEEEESSTTS--SHHHHHHHHHHHT
T ss_pred HHhhcccC-CCCCCHHHhCC--hHHHHHHHHHHHHHHhhChHhH--h-hccCCCceEEEECCCCC--CHHHHHHHHHHHc
Confidence 34444443 34689998644 4889999999887778887763 2 23355678999999999 7999999999999
Q ss_pred CCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccc
Q 001227 387 SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYT 466 (1119)
Q Consensus 387 ~a~LL~lDs~~~~g~~~~e~~~~~~~~~~~~~s~~~k~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 466 (1119)
+.+++.++.+.+.+.+.
T Consensus 142 ~~~~~~i~~~~l~~~~~--------------------------------------------------------------- 158 (357)
T 3d8b_A 142 GATFFSISASSLTSKWV--------------------------------------------------------------- 158 (357)
T ss_dssp TCEEEEEEGGGGCCSST---------------------------------------------------------------
T ss_pred CCeEEEEehHHhhcccc---------------------------------------------------------------
Confidence 88887776543322100
Q ss_pred cccCCceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCCCCCCCccccccccccc
Q 001227 467 FKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLD 546 (1119)
Q Consensus 467 ~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d 546 (1119)
T Consensus 159 -------------------------------------------------------------------------------- 158 (357)
T 3d8b_A 159 -------------------------------------------------------------------------------- 158 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchhhHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcC----CCCEEEEeeccC
Q 001227 547 SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL----PSNVVVIGSHTQ 614 (1119)
Q Consensus 547 ~~~~~~~~k~~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~--------~~~~~~l~~~L~~L----~g~vvvIgs~~~ 614 (1119)
......+..+|+.+.. .+|.||||||+|.+.... .+..+.+...|+.+ ..+|+|||++|
T Consensus 159 -----g~~~~~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn- 229 (357)
T 3d8b_A 159 -----GEGEKMVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN- 229 (357)
T ss_dssp -----THHHHHHHHHHHHHHH---TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEES-
T ss_pred -----chHHHHHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecC-
Confidence 0011234556666655 689999999999965421 23344455555544 35899999999
Q ss_pred CCcccccCCCCCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHHhhh
Q 001227 615 LDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERD 694 (1119)
Q Consensus 615 ~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~e~~ 694 (1119)
.|+.+++ +++|||...++++
T Consensus 230 -----------------------------~~~~l~~-------------------------------~l~~Rf~~~i~i~ 249 (357)
T 3d8b_A 230 -----------------------------RPQEIDE-------------------------------AARRRLVKRLYIP 249 (357)
T ss_dssp -----------------------------CGGGBCH-------------------------------HHHTTCCEEEECC
T ss_pred -----------------------------ChhhCCH-------------------------------HHHhhCceEEEeC
Confidence 3333443 5555555555666
Q ss_pred hhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHH
Q 001227 695 VETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNI 774 (1119)
Q Consensus 695 Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~d 774 (1119)
+|+...|..|++.+.......+++.+++.|+..+.||++++|+.||..|...++......... .........+...+
T Consensus 250 ~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~---~~~~~~~~~i~~~d 326 (357)
T 3d8b_A 250 LPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA---TITPDQVRPIAYID 326 (357)
T ss_dssp CCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------------CCCBCHHH
T ss_pred CcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc---cccccccCCcCHHH
Confidence 666666666666554333334677889999999999999999999999998888754321111 11111223456778
Q ss_pred HHhhhhhhhh
Q 001227 775 LQGIQSESKS 784 (1119)
Q Consensus 775 f~~a~~eik~ 784 (1119)
|..++.++++
T Consensus 327 ~~~al~~~~p 336 (357)
T 3d8b_A 327 FENAFRTVRP 336 (357)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHhcCC
Confidence 8877766665
No 84
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.46 E-value=6.6e-13 Score=146.41 Aligned_cols=188 Identities=22% Similarity=0.226 Sum_probs=131.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 887 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~ 887 (1119)
..+|++++|.+.+++.+.+.+.. ... .++||+||||||||++|+++++.+ +.+++.+++++
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-------------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-------------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 46799999999999988876542 112 359999999999999999999986 45688899876
Q ss_pred cccccccchHHHHHHHHHHH-H-hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecC
Q 001227 888 ITSKWFGEGEKYVKAVFSLA-S-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 965 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A-~-k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN 965 (1119)
..+. ......+....... . ...+.||+|||+|.+.. ...+.++..++. .+..+.+|++||
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~----~~~~~~~i~~~~ 140 (319)
T 2chq_A 79 ERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEM----YSKSCRFILSCN 140 (319)
T ss_dssp TTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHHTTGGGTSS----SSSSEEEEEEES
T ss_pred ccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHHHHHHHHHh----cCCCCeEEEEeC
Confidence 4321 11111222221110 0 13468999999998821 123344444443 235688899999
Q ss_pred CCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHH
Q 001227 966 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1034 (1119)
Q Consensus 966 ~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa 1034 (1119)
.+..+.+++.+|+. .+.++.|+.+++.+++..++.+.++. ++..++.|+..+.|.. +.+.++++.++
T Consensus 141 ~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~-r~~~~~l~~~~ 208 (319)
T 2chq_A 141 YVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDF-RKAINALQGAA 208 (319)
T ss_dssp CGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCH-HHHHHHHHHHH
T ss_pred ChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 99999999999995 89999999999999999998876543 4556778887776644 44445555444
No 85
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.46 E-value=2.9e-13 Score=147.13 Aligned_cols=201 Identities=19% Similarity=0.165 Sum_probs=113.1
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCcccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS 890 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~~s~L~s 890 (1119)
.+|++++|.+..+..+.+.+.... ....++||+||||||||++|+++++.+. .+|+.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred cccccceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 478899999998888887665311 1235799999999999999999999874 7899999987633
Q ss_pred c-----cccchHHH-------HHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccE
Q 001227 891 K-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 958 (1119)
Q Consensus 891 ~-----~~G~~e~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~V 958 (1119)
. .+|..... ....|..+ ..++||||||+.+- ...+..+.++++.......+.......++
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----MMVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----HHHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred hHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----HHHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 2 12211100 01123333 35899999999882 22233333333322111111111112467
Q ss_pred EEEEecCCC-------CCCcHHHHhccccccccCCCCHHHHH----HHHHHHHhh----ccc-----CChhcHHHHHHHc
Q 001227 959 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAK----EEL-----ASDVDLEGIANMA 1018 (1119)
Q Consensus 959 lVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~----eILk~ll~k----~~l-----~~d~dl~~LA~~T 1018 (1119)
.+|+|||.+ ..+.+.+.+||. .+.+.+|+..+|. .+++.++.. ... .++..++.|....
T Consensus 143 ~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~ 221 (265)
T 2bjv_A 143 RLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYR 221 (265)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSC
T ss_pred EEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCC
Confidence 899999874 247789999995 3567777776654 344444433 221 1233334444433
Q ss_pred CCCcHHHHHHHHHHHHh
Q 001227 1019 DGYSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 1019 eGysg~DL~~L~~~Aa~ 1035 (1119)
-..+.++|.++++.++.
T Consensus 222 ~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 222 WPGNIRELKNVVERSVY 238 (265)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 23355677777776653
No 86
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=1.4e-12 Score=144.11 Aligned_cols=183 Identities=18% Similarity=0.163 Sum_probs=130.5
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 887 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~ 887 (1119)
..+|++++|.+..++.|.+.+.. .+. .++||+||+|+|||++|+++++.+ +.+++.+++++
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-------------GNM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-------------CCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-------------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 35789999999999999988752 122 249999999999999999999986 45688888765
Q ss_pred cccccccchHHHHHHHHHHHH-------hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEE
Q 001227 888 ITSKWFGEGEKYVKAVFSLAS-------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 960 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A~-------k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlV 960 (1119)
..+ ...++.++.... ...+.||+|||+|.+.. . ..+.|+..++. ....+.+
T Consensus 83 ~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------~----~~~~L~~~le~----~~~~~~~ 140 (323)
T 1sxj_B 83 DRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------G----AQQALRRTMEL----YSNSTRF 140 (323)
T ss_dssp CCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------H----HHHTTHHHHHH----TTTTEEE
T ss_pred ccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------H----HHHHHHHHHhc----cCCCceE
Confidence 321 234455554443 22378999999998831 1 12223333322 1245778
Q ss_pred EEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHH
Q 001227 961 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1033 (1119)
Q Consensus 961 IaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~A 1033 (1119)
|++||.+..+.+++.+|+. .+.++.|+.++..++++..+...++. ++..++.++..+.|..... .++++.+
T Consensus 141 il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a-~~~l~~~ 212 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQA-INNLQST 212 (323)
T ss_dssp EEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHH-HHHHHHH
T ss_pred EEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 8888989999999999984 89999999999999999988765433 4556788888887765443 3444433
No 87
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=1.7e-12 Score=143.65 Aligned_cols=189 Identities=24% Similarity=0.278 Sum_probs=128.9
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 887 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg-----~~fi~V~~s~ 887 (1119)
..+|++++|++.+++.|...+.. + +. .++||+||||+|||++|+++++.+. .+++.+++++
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT----------G---SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH----------T---CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc----------C---CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 35789999999999999987752 1 12 3599999999999999999999863 3578888765
Q ss_pred cccccccchHHHHHHHHHHH--HhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecC
Q 001227 888 ITSKWFGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 965 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A--~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN 965 (1119)
..+. ......+....... ....+.||+|||+|.+. ...+.. ++..++. ....+.+|++||
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----~~~~~~-------L~~~le~----~~~~~~~i~~~~ 148 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----QDAQQA-------LRRTMEM----FSSNVRFILSCN 148 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----HHHHHH-------HHHHHHH----TTTTEEEEEEES
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----HHHHHH-------HHHHHHh----cCCCCeEEEEeC
Confidence 3221 11111111111000 01346899999999882 112222 2222222 124578888899
Q ss_pred CCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001227 966 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 966 ~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~~Aa~ 1035 (1119)
.+..+.+++.+|+. .+.++.|+.++..++++..+....+. ++..++.++..+.| +.+.+.++++.++.
T Consensus 149 ~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 149 YSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA 217 (327)
T ss_dssp CGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred CccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh
Confidence 99999999999995 78999999999999999988765542 45567888888876 44555566665553
No 88
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.43 E-value=2.3e-12 Score=145.70 Aligned_cols=184 Identities=24% Similarity=0.267 Sum_probs=131.3
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 879 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~-------------- 879 (1119)
.+|++++|.+..++.|...+.. .+.+..+||+||+|||||++|+++++.+++.
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 4788999999999999987752 1233579999999999999999999988542
Q ss_pred ----------EEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhh
Q 001227 880 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 945 (1119)
Q Consensus 880 ----------fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~ 945 (1119)
++.++...- .....++.++..+.. ..+.||+|||+|.+. . ...+.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------~----~~~~~Ll~ 141 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------R----HSFNALLK 141 (373)
T ss_dssp HHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------H----HHHHHHHH
T ss_pred HHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------H----HHHHHHHH
Confidence 233333210 111234556655543 236899999999882 1 12233343
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcHH
Q 001227 946 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1024 (1119)
Q Consensus 946 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg~ 1024 (1119)
.++. .+..+++|++|+.+..+.+.+.+|+ ..+.++.|+.++..++++.++...++. ++..++.++..+.| +.+
T Consensus 142 ~le~----~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r 215 (373)
T 1jr3_A 142 TLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 215 (373)
T ss_dssp HHHS----CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHH
T ss_pred HHhc----CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHH
Confidence 4433 2356888888888889999999998 789999999999999999988776543 44557888888877 566
Q ss_pred HHHHHHHHHH
Q 001227 1025 DLKNLCVTAA 1034 (1119)
Q Consensus 1025 DL~~L~~~Aa 1034 (1119)
++.++++.+.
T Consensus 216 ~~~~~l~~~~ 225 (373)
T 1jr3_A 216 DALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776664
No 89
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.42 E-value=3.2e-13 Score=151.09 Aligned_cols=199 Identities=17% Similarity=0.208 Sum_probs=123.3
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 891 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~--- 891 (1119)
+++|....++.+.+.+... .....+|||+||||||||++|++|++.+ +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV------------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH------------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 5788888888888776531 1223579999999999999999999976 689999999876432
Q ss_pred --cccchH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 001227 892 --WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 962 (1119)
Q Consensus 892 --~~G~~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIa 962 (1119)
.+|... ......|..|. .++||||||+.+- ...+..+.+++++......|.......++.||+
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~-----~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~ 142 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS-----PLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 142 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC-----HHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC-----HHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence 222110 01223455554 3899999999882 222333333333321111111111235689999
Q ss_pred ecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----c----cCChhcHHHHHHHcCCCcH
Q 001227 963 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----E----LASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 963 TTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k~----~----l~~d~dl~~LA~~TeGysg 1023 (1119)
|||.. ..+.+.+..||. .+.+.+|+..+|.+ +++.++... . ..++..++.|....-.-+.
T Consensus 143 atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnv 221 (304)
T 1ojl_A 143 ATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNI 221 (304)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHH
T ss_pred ecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCH
Confidence 99875 246677888884 67777888766543 666655432 1 1133345556555423366
Q ss_pred HHHHHHHHHHHhhh
Q 001227 1024 SDLKNLCVTAAHCP 1037 (1119)
Q Consensus 1024 ~DL~~L~~~Aa~~a 1037 (1119)
++|.++++.|+..+
T Consensus 222 ReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 222 RELENAIERAVVLL 235 (304)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 78888888776543
No 90
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.40 E-value=6.6e-13 Score=157.15 Aligned_cols=127 Identities=20% Similarity=0.360 Sum_probs=96.0
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCC
Q 001227 558 INELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 624 (1119)
Q Consensus 558 ~~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~---~~~~~~l~~~L~~L~--g~vvvIgs~~~~d~~k~k~~~ 624 (1119)
+..+|+.+.. ..|.||||||+|.+... + .+..+.|...++.+. .+|+||++||
T Consensus 97 ~r~lf~~A~~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn----------- 162 (476)
T 2ce7_A 97 VRDLFAQAKA---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN----------- 162 (476)
T ss_dssp HHHHHHHHHH---TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES-----------
T ss_pred HHHHHHHHHh---cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecC-----------
Confidence 3445665555 68999999999994331 1 134455555555543 4899999999
Q ss_pred CCceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhccc
Q 001227 625 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 702 (1119)
Q Consensus 625 ~~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~ 702 (1119)
.|+.+|+ +++| ||++++++++|+...|.
T Consensus 163 -------------------~~~~Ld~-------------------------------allR~gRFd~~i~i~~Pd~~~R~ 192 (476)
T 2ce7_A 163 -------------------RPDILDP-------------------------------ALLRPGRFDKKIVVDPPDMLGRK 192 (476)
T ss_dssp -------------------CGGGSCG-------------------------------GGGSTTSSCEEEECCCCCHHHHH
T ss_pred -------------------Chhhhch-------------------------------hhcccCcceeEeecCCCCHHHHH
Confidence 3444554 7777 88889999999999999
Q ss_pred chhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhh
Q 001227 703 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 703 ~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r 750 (1119)
+|+++|.. ..++ +++++..+|..+.||+|+||+.+|..|+..|..+
T Consensus 193 ~Il~~~~~--~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 193 KILEIHTR--NKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239 (476)
T ss_dssp HHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--hCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc
Confidence 99998864 3344 5678999999999999999999999999988753
No 91
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.39 E-value=7.2e-13 Score=152.60 Aligned_cols=89 Identities=21% Similarity=0.277 Sum_probs=67.0
Q ss_pred HHHHHHhcccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001227 303 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 382 (1119)
Q Consensus 303 ~~~~l~~~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakAL 382 (1119)
+.+.+.+.++++ .-.++|+++--. +..+..|.......+.++++.. .+....+.|||.||+|| ..++||+|+
T Consensus 97 ~~~~~~~~~~~~-~~~~~~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppGt--GKT~la~ai 168 (389)
T 3vfd_A 97 LANLIMNEIVDN-GTAVKFDDIAGQ--DLAKQALQEIVILPSLRPELFT---GLRAPARGLLLFGPPGN--GKTMLAKAV 168 (389)
T ss_dssp CCTTGGGTTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGCCCSEEEEESSTTS--CHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCCChHHhCCH--HHHHHHHHHHHHHhccCHHHhc---ccCCCCceEEEECCCCC--CHHHHHHHH
Confidence 334445556654 357899997665 8899999998888888776632 33345789999999999 799999999
Q ss_pred HhhcCCeEEEEeccCCC
Q 001227 383 AKHFSARLLIVDSLLLP 399 (1119)
Q Consensus 383 A~~f~a~LL~lDs~~~~ 399 (1119)
|++++.+++.++...+.
T Consensus 169 a~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 169 AAESNATFFNISAASLT 185 (389)
T ss_dssp HHHTTCEEEEECSCCC-
T ss_pred HHhhcCcEEEeeHHHhh
Confidence 99999888877764433
No 92
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=6.3e-12 Score=141.58 Aligned_cols=188 Identities=14% Similarity=0.181 Sum_probs=122.8
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 878 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~-------------- 878 (1119)
..+|++++|++.+++.+...+.. . .+.+ ++||+||+|+|||+++++++.++..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~---------~---~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQ---------P---RDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTC---------T---TCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhh---------C---CCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 46899999999999888776510 1 1223 3999999999999999999996511
Q ss_pred ---------------cEEEEecCccccccccchHHHHHHHHHHHH--------------hcCCeEEEEccccccccCCCC
Q 001227 879 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLAS--------------KIAPSVVFVDEVDSMLGRREN 929 (1119)
Q Consensus 879 ---------------~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~--------------k~~PsILfIDEID~L~~~r~s 929 (1119)
+++.++..... ......++..+..+. ...|.||+|||++.| +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-----~ 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-----T 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-----C
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-----C
Confidence 12223222110 001112444444332 225679999999986 2
Q ss_pred CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-C-
Q 001227 930 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-S- 1007 (1119)
Q Consensus 930 ~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~- 1007 (1119)
...+. .++..++.. ..+..+|.+|+.+..+.+++++|+ ..+.|+.|+.+++.++++..+.+.++. +
T Consensus 148 ~~~~~-------~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 148 KDAQA-------ALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp HHHHH-------HHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred HHHHH-------HHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 11222 222222221 134778888888899999999999 789999999999999999998776543 4
Q ss_pred hhcHHHHHHHcCCCcHHHHHHHHHHHHh
Q 001227 1008 DVDLEGIANMADGYSGSDLKNLCVTAAH 1035 (1119)
Q Consensus 1008 d~dl~~LA~~TeGysg~DL~~L~~~Aa~ 1035 (1119)
+..++.++..+.|.. +++.++++.++.
T Consensus 216 ~~~l~~i~~~~~G~~-r~a~~~l~~~~~ 242 (354)
T 1sxj_E 216 KDILKRIAQASNGNL-RVSLLMLESMAL 242 (354)
T ss_dssp SHHHHHHHHHHTTCH-HHHHHHHTHHHH
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHH
Confidence 566888998887754 455555554443
No 93
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.34 E-value=6e-12 Score=136.08 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=52.9
Q ss_pred CCCccccccccccccchhhHHHHHHHhhhhhcccccc-ccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEE
Q 001227 313 GPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLL 391 (1119)
Q Consensus 313 ~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~-~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL 391 (1119)
+.+...++|+++--+ +..|..|....- .+++++. .+++. ...+.|||.||+|| ...+||||||+..+++++
T Consensus 3 ~~~~~~~~~~~i~G~--~~~~~~l~~~~~-~~~~~~~~~~~~~---~~~~~vll~G~~Gt--GKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 3 TEDQIKTTFADVAGC--DEAKEEVAELVE-YLREPSRFQKLGG---KIPKGVLMVGPPGT--GKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp EECSSCCCGGGSCSC--HHHHHHTHHHHH-HHHCGGGC--------CCCCEEEEECCTTS--CHHHHHHHHHHHHTCCEE
T ss_pred CccCCCCCHHHhcCc--HHHHHHHHHHHH-HHhCHHHHHHcCC---CCCCeEEEECcCCC--CHHHHHHHHHHHcCCCEE
Confidence 345667899998776 888888877654 2555432 22221 23456999999999 799999999999988876
Q ss_pred EEec
Q 001227 392 IVDS 395 (1119)
Q Consensus 392 ~lDs 395 (1119)
.++.
T Consensus 75 ~i~~ 78 (257)
T 1lv7_A 75 TISG 78 (257)
T ss_dssp EECS
T ss_pred EEeH
Confidence 6654
No 94
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.33 E-value=3.7e-12 Score=139.30 Aligned_cols=74 Identities=24% Similarity=0.241 Sum_probs=58.6
Q ss_pred ccccccccccccchhhHHHHHHHhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 316 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 316 ~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
.-+++|+++.-+ +..+..|.......+++++.. +++ + ...+.|||.||+|| ...+||||+|+.++.+++.++
T Consensus 11 ~~~~~~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~--~-~~~~~~ll~G~~Gt--GKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 11 RPNVRYEDIGGL--EKQMQEIREVVELPLKHPELFEKVG--I-EPPKGILLYGPPGT--GKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHC--C-CCCSEEEEESSSSS--SHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCCeEEEECCCCC--cHHHHHHHHHHHhCCCEEEEe
Confidence 346889998776 999999999888888887653 332 2 34566999999999 799999999999988877776
Q ss_pred cc
Q 001227 395 SL 396 (1119)
Q Consensus 395 s~ 396 (1119)
..
T Consensus 84 ~~ 85 (285)
T 3h4m_A 84 GS 85 (285)
T ss_dssp GG
T ss_pred hH
Confidence 43
No 95
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=3.9e-13 Score=163.44 Aligned_cols=173 Identities=20% Similarity=0.281 Sum_probs=103.8
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE----ecCccccccc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI----SMSSITSKWF 893 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V----~~s~L~s~~~ 893 (1119)
.|.|++.++..+.-.+.. ..+..... ...+...++||+||||||||+||+++|+.++..++.. ++..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~~--g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 296 SIYGHWELKEALALALFG--GVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp TTSCCHHHHHHHTTTTTC--CCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred hhcChHHHHHHHHHHHhC--CCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 578999888776433221 00000000 0112234799999999999999999999987655442 2222322211
Q ss_pred cch----HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhcc--CCcccCCccEEEEEecCCC
Q 001227 894 GEG----EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNRP 967 (1119)
Q Consensus 894 G~~----e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ld--gl~~k~~~~VlVIaTTN~p 967 (1119)
... .......+..|. .+||||||||.+ ++..+..+..++++-...+. +.....+.++.||||||+.
T Consensus 373 ~~~~~g~~~~~~G~l~~A~---~gil~IDEid~l-----~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLAD---GGIAVIDEIDKM-----RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp SGGGTSSCSEEECHHHHHS---SSEECCTTTTCC-----CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred eccccccccccCCeeEecC---CCcEEeehhhhC-----CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 110 000012333443 389999999987 33344455444444333222 3323334678999999988
Q ss_pred C-------------CCcHHHHhcccc-ccccCCCCHHHHHHHHHHHHhh
Q 001227 968 F-------------DLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 968 ~-------------~Ld~aLlrRF~~-~I~v~lPd~eeR~eILk~ll~k 1002 (1119)
. .|++++++||+. .+..+.|+.+ ...|.+.++..
T Consensus 445 ~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 445 FGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp TCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 6 899999999974 4455777777 88888877764
No 96
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.30 E-value=3.4e-12 Score=152.02 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=99.5
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCc-ccccccc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITSKWFG 894 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~s~-L~s~~~G 894 (1119)
.++|.+++++.+...+.. ..++||+||||||||++|+++|+.++ .+|..+++.- .....+|
T Consensus 23 ~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 478889988877665541 14899999999999999999999884 4666666532 1112222
Q ss_pred ch--HH-HHHHHHHHHHhc---CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 001227 895 EG--EK-YVKAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 968 (1119)
Q Consensus 895 ~~--e~-~I~~lF~~A~k~---~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~ 968 (1119)
.. .. .-...|..+.+. .++|||||||+.+ ++..+..+..++++....+.+.....+.++ +|+|||++.
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~-----~~~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI~ATN~lp 160 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERQFRNGAHVEKIPMRL-LVAASNELP 160 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGC-----CHHHHHHHHHHHHSSEEECSSSEEECCCCE-EEEEESSCC
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh-----cHHHHHHHHHHHHHHhccCCCCcCCcchhh-hhhccccCC
Confidence 10 00 012233322221 4679999999876 333444455555544444444433333444 566777532
Q ss_pred ---CCcHHHHhccccccccCCCCH-HHHHHHHHHHH
Q 001227 969 ---DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1000 (1119)
Q Consensus 969 ---~Ld~aLlrRF~~~I~v~lPd~-eeR~eILk~ll 1000 (1119)
.+.+++++||...+.++.|+. +++.+|++...
T Consensus 161 e~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 161 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred CccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 245799999988899999987 77888887653
No 97
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.27 E-value=1.2e-11 Score=133.02 Aligned_cols=73 Identities=25% Similarity=0.241 Sum_probs=52.3
Q ss_pred ccccccccccchhhHHHHHHHhhhhhccccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001227 318 EVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 396 (1119)
Q Consensus 318 ~vsfd~fPyylse~tk~~L~~~~~~hL~~~~-~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~ 396 (1119)
+++|+++--+ ++.|..|...... +++++ +..++ ....+.|||.||+|| ...+||||+|++++.+++.++..
T Consensus 2 ~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~~~~g---~~~~~~vll~G~~Gt--GKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 2 GVSFKDVAGM--HEAKLEVREFVDY-LKSPERFLQLG---AKVPKGALLLGPPGC--GKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCCTTSSCSC--HHHHHHHHHHHHH-HHCCC---------CCCCCEEEEESCTTS--SHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHHcC---CCCCceEEEECCCCC--CHHHHHHHHHHHhCCCEEEechH
Confidence 5789998666 8888888876653 44443 22332 234567999999999 79999999999998888777654
Q ss_pred CC
Q 001227 397 LL 398 (1119)
Q Consensus 397 ~~ 398 (1119)
.+
T Consensus 74 ~~ 75 (262)
T 2qz4_A 74 EF 75 (262)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 98
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=1.1e-10 Score=131.83 Aligned_cols=174 Identities=22% Similarity=0.285 Sum_probs=119.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 887 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg-----~~fi~V~~s~ 887 (1119)
..+|+++.|++.+++.|...+.. + +. .++||+||||||||++|+++|+.+. ..++.+++++
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~----------g---~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDE----------G---KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT----------T---CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc----------C---CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 35789999999999999887762 1 22 2499999999999999999999873 2467777665
Q ss_pred cccccccchHHHHHHHHHHHHh------cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEE
Q 001227 888 ITSKWFGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 961 (1119)
Q Consensus 888 L~s~~~G~~e~~I~~lF~~A~k------~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVI 961 (1119)
..+ ...++..+..... ..+.|++|||+|.+. ...+..+.+ .++.. .....+|
T Consensus 87 ~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----~~~~~~L~~-------~le~~----~~~~~~i 144 (340)
T 1sxj_C 87 DRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----NAAQNALRR-------VIERY----TKNTRFC 144 (340)
T ss_dssp CCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----HHHHHHHHH-------HHHHT----TTTEEEE
T ss_pred ccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----HHHHHHHHH-------HHhcC----CCCeEEE
Confidence 211 2233333322221 136899999999882 122222222 22221 2446677
Q ss_pred EecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccC-ChhcHHHHHHHcCCCcH
Q 001227 962 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 962 aTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~-~d~dl~~LA~~TeGysg 1023 (1119)
.+||.+..+.+++++|+. .+.+..++.++..+++...+....+. ++..+..++..+.|-..
T Consensus 145 l~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 145 VLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMR 206 (340)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHH
T ss_pred EEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 888999999999999984 78888899999999998888654432 44556777777766433
No 99
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.26 E-value=4.7e-12 Score=150.68 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=57.1
Q ss_pred hHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhh
Q 001227 682 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 749 (1119)
Q Consensus 682 ALLR--Rfe~q~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~ 749 (1119)
+++| ||++++++++|+...|.+|++.|.. ..++ +++++..+|..+.||+|+||+.+|..|+.+|..
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 253 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTT
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 7766 8889999999999999999998853 3345 678899999999999999999999999988775
No 100
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.25 E-value=6.4e-12 Score=125.03 Aligned_cols=132 Identities=8% Similarity=0.109 Sum_probs=87.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccccc
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG 894 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G 894 (1119)
+++|.....+.+.+.+... .....+|||+||||||||++|++|++.. +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 5678888888887766531 1123579999999999999999999887 78999 999886554
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------
Q 001227 895 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP------- 967 (1119)
Q Consensus 895 ~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p------- 967 (1119)
......|..+.. ++|||||||.+- ...+.. ++..+.. ...++.+|+|||.+
T Consensus 66 ---~~~~~~~~~a~~---g~l~ldei~~l~-----~~~q~~-------Ll~~l~~----~~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 ---PQLNDFIALAQG---GTLVLSHPEHLT-----REQQYH-------LVQLQSQ----EHRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp ---SCHHHHHHHHTT---SCEEEECGGGSC-----HHHHHH-------HHHHHHS----SSCSSCEEEEESSCHHHHHHH
T ss_pred ---hhhhcHHHHcCC---cEEEEcChHHCC-----HHHHHH-------HHHHHhh----cCCCEEEEEECCcCHHHHHHc
Confidence 234456666643 899999999882 222222 2222221 23457888999864
Q ss_pred CCCcHHHHhccccccccCCCC
Q 001227 968 FDLDEAVVRRLPRRLMVNLPD 988 (1119)
Q Consensus 968 ~~Ld~aLlrRF~~~I~v~lPd 988 (1119)
..+.+.+..|+. .+.+.+|.
T Consensus 124 ~~~~~~L~~rl~-~~~i~lPp 143 (145)
T 3n70_A 124 NHIIAELYYCFA-MTQIACLP 143 (145)
T ss_dssp SCCCHHHHHHHH-HHEEECCC
T ss_pred CCCCHHHHHHhc-CCEEeCCC
Confidence 245666766763 34555554
No 101
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.23 E-value=2.6e-12 Score=127.73 Aligned_cols=132 Identities=13% Similarity=0.152 Sum_probs=86.1
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGE 897 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e 897 (1119)
+++|.+..++.+.+.+.... ....+|||+||||||||++|+++++... +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----
Confidence 57788888888888776311 1235799999999999999999999888 99999998865433
Q ss_pred HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-CC----CcH
Q 001227 898 KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDE 972 (1119)
Q Consensus 898 ~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p-~~----Ld~ 972 (1119)
...+|..+. .++|||||||.+- ...+..+.++++.. .+.++.+|+|||.+ .. +.+
T Consensus 67 --~~~~~~~a~---~~~l~lDei~~l~-----~~~q~~Ll~~l~~~----------~~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 67 --PMELLQKAE---GGVLYVGDIAQYS-----RNIQTGITFIIGKA----------ERCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp --HHHHHHHTT---TSEEEEEECTTCC-----HHHHHHHHHHHHHH----------TTTTCEEEEEEEECTTTC--CHHH
T ss_pred --hhhHHHhCC---CCeEEEeChHHCC-----HHHHHHHHHHHHhC----------CCCCEEEEEecCCCHHHHHhCccH
Confidence 456666664 4899999999882 22222222222221 12457888888754 33 345
Q ss_pred HHHhccccccccCCCC
Q 001227 973 AVVRRLPRRLMVNLPD 988 (1119)
Q Consensus 973 aLlrRF~~~I~v~lPd 988 (1119)
.+..|+. .+.+.+|.
T Consensus 127 ~L~~rl~-~~~i~lPp 141 (143)
T 3co5_A 127 KLAGLFS-ESVVRIPP 141 (143)
T ss_dssp HHHHHSS-SEEEEECC
T ss_pred HHHHHhc-CcEEeCCC
Confidence 5555763 34455554
No 102
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.21 E-value=4.4e-12 Score=137.70 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=52.1
Q ss_pred cCCCccccccccccccchhhHHHHHHHhhhhhcccccc-ccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001227 312 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 390 (1119)
Q Consensus 312 ~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~-~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~L 390 (1119)
++.+...++|+++-.+ +..+..|....- .+++++. .+++. ...+.|||.||+|| ...+||||||++++.++
T Consensus 1 i~~~~~~~~~~~i~G~--~~~~~~l~~~~~-~~~~~~~~~~~~~---~~~~~vll~G~~Gt--GKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 1 INAEKPNVRFKDMAGN--EEAKEEVVEIVD-FLKYPERYANLGA---KIPKGVLLVGPPGT--GKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCCCCCCCSTTSSSC--TTTHHHHHHHHH-HHHCHHHHHHHSC---CCCSCCCCBCSSCS--SHHHHHHHHHHHHTCCC
T ss_pred CCccCCCCCHHHhCCc--HHHHHHHHHHHH-HHHChHHHHHCCC---CCCceEEEECCCCC--cHHHHHHHHHHHhCCCE
Confidence 3567778999997766 778888877654 3555443 22322 23345999999999 79999999999887654
Q ss_pred EEE
Q 001227 391 LIV 393 (1119)
Q Consensus 391 L~l 393 (1119)
+.+
T Consensus 73 ~~v 75 (268)
T 2r62_A 73 FSM 75 (268)
T ss_dssp CCC
T ss_pred EEe
Confidence 433
No 103
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.20 E-value=3.4e-10 Score=127.83 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=115.0
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 001227 822 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 879 (1119)
Q Consensus 822 ~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~---------------------- 879 (1119)
+++..+.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~~-------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GHHHHHHHHHHHHT-------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 45666667666542 2345679999999999999999999988532
Q ss_pred --EEEEecCccccccccchHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCccc
Q 001227 880 --FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 953 (1119)
Q Consensus 880 --fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k 953 (1119)
++.++..+- .-......++.++..+... ...|++|||+|.|- ....+.|+..++.
T Consensus 74 ~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEe---- 134 (334)
T 1a5t_A 74 PDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEE---- 134 (334)
T ss_dssp TTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTS----
T ss_pred CCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcC----
Confidence 344433210 0012234577777776543 35899999999982 1123445555544
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHH
Q 001227 954 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1024 (1119)
Q Consensus 954 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~ 1024 (1119)
++.++++|.+|+.++.+.+++++|+ ..+.|+.|+.++..++++... ..++..+..++..+.|..+.
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~s~G~~r~ 200 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV----TMSQDALLAALRLSAGSPGA 200 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHTTTCHHH
T ss_pred CCCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHH
Confidence 2356888888888999999999999 579999999999999888764 23455667788888775443
No 104
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.12 E-value=1.4e-10 Score=141.31 Aligned_cols=223 Identities=19% Similarity=0.252 Sum_probs=131.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCccc
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSIT 889 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~---fi~V~~s~L~ 889 (1119)
...|++++|.+.+++.+...+.. ...++|+||||||||+||++|+..+... .+.+.+....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~----------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQ----------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHT----------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred ccccceEECchhhHhhccccccC----------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 35789999999999888877652 1479999999999999999999987422 2222221110
Q ss_pred c--ccc-----cchHH-------------------------------------------------HHHHHHH--------
Q 001227 890 S--KWF-----GEGEK-------------------------------------------------YVKAVFS-------- 905 (1119)
Q Consensus 890 s--~~~-----G~~e~-------------------------------------------------~I~~lF~-------- 905 (1119)
. ... +.... ....+|.
T Consensus 101 ~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~ 180 (604)
T 3k1j_A 101 ENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ 180 (604)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC-
T ss_pred ccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh
Confidence 0 000 00000 0111111
Q ss_pred ---------------HHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCC----------cccCCccEEE
Q 001227 906 ---------------LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----------RTKDKERVLV 960 (1119)
Q Consensus 906 ---------------~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl----------~~k~~~~VlV 960 (1119)
.+....+++|||||++.| ++..+..+.+++++-...+.+. ....+.++.|
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~v 255 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVL 255 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEE
T ss_pred cCCccccccccccCceeeecCCCEEEEechhhC-----CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEE
Confidence 011224579999999987 3344555555555443333332 1112357889
Q ss_pred EEecCCC--CCCcHHHHhccc---cccccCC--C-CHHHHHHHHHHHHhhcc------cCChhcHHHHHHHc---CCC--
Q 001227 961 LAATNRP--FDLDEAVVRRLP---RRLMVNL--P-DAPNREKIIRVILAKEE------LASDVDLEGIANMA---DGY-- 1021 (1119)
Q Consensus 961 IaTTN~p--~~Ld~aLlrRF~---~~I~v~l--P-d~eeR~eILk~ll~k~~------l~~d~dl~~LA~~T---eGy-- 1021 (1119)
|+|||+. +.+++++++||. ..+.++. + ..+....+++.+..... ..++..+..|.... .|.
T Consensus 256 I~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~ 335 (604)
T 3k1j_A 256 VAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKG 335 (604)
T ss_dssp EEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTT
T ss_pred EEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhcccc
Confidence 9999986 679999999995 2333322 1 24456666655544321 12333455555433 442
Q ss_pred ----cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccHHHHHHHHHH
Q 001227 1022 ----SGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 1082 (1119)
Q Consensus 1022 ----sg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~k 1082 (1119)
+.+++.++++.|...|..+ ....++.+|+..|+..
T Consensus 336 ~l~~~~R~l~~llr~A~~~A~~~--------------------------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 336 HLTLRLRDLGGIVRAAGDIAVKK--------------------------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHT--------------------------TCSSBCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHhc--------------------------CcccccHHHHHHHHHh
Confidence 6788888888876544221 1235888898888854
No 105
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.12 E-value=1.2e-09 Score=124.93 Aligned_cols=206 Identities=15% Similarity=0.088 Sum_probs=127.5
Q ss_pred cccccCcHHHHHHHHHHH-hcccCChhhhhcCCCCCCCceEEE--EcCCCChHHHHHHHHHHHh---------CCcEEEE
Q 001227 816 FDDIGALENVKDTLKELV-MLPLQRPELFCKGQLTKPCKGILL--FGPPGTGKTMLAKAVATEA---------GANFINI 883 (1119)
Q Consensus 816 fddI~G~e~ik~~L~e~v-~~pL~~pelf~k~~l~~P~~gILL--~GPpGTGKT~LArAIA~el---------g~~fi~V 883 (1119)
.++++|.+...+.|.+.+ ..... +....+..++| +||+|+|||+|++++++.+ ++.++.+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 357899999988888877 42111 10123467999 9999999999999999876 5678888
Q ss_pred ecCcccc------cc---c-------cc-hHHHHHHHHHHHH-hcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhh
Q 001227 884 SMSSITS------KW---F-------GE-GEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 945 (1119)
Q Consensus 884 ~~s~L~s------~~---~-------G~-~e~~I~~lF~~A~-k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~ 945 (1119)
+|..... .. + +. .......+..... ...|.||+|||+|.+...+. .....+. .++.
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~----~l~~ 166 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLY----TLLR 166 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHH----HHHT
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHH----HHHH
Confidence 8743111 00 0 11 1222333333332 23578999999998853211 1122222 2222
Q ss_pred hccCCcccCC--ccEEEEEecCCCC---CCc---HHHHhccccccccCCCCHHHHHHHHHHHHhhcc---cCChhcHHHH
Q 001227 946 NWDGLRTKDK--ERVLVLAATNRPF---DLD---EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE---LASDVDLEGI 1014 (1119)
Q Consensus 946 ~ldgl~~k~~--~~VlVIaTTN~p~---~Ld---~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~---l~~d~dl~~L 1014 (1119)
.+..... .. .++.+|++|+.++ .++ +.+.++|...+.++.++.++..+++...+.... ..++..+..+
T Consensus 167 ~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i 245 (412)
T 1w5s_A 167 VHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 245 (412)
T ss_dssp HHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 2221110 12 5688888887654 334 556677766689999999999999988765421 2345567888
Q ss_pred HHHcC------CCcHHHHHHHHHHHHhhh
Q 001227 1015 ANMAD------GYSGSDLKNLCVTAAHCP 1037 (1119)
Q Consensus 1015 A~~Te------Gysg~DL~~L~~~Aa~~a 1037 (1119)
+..+. |. +..+..++..|+..+
T Consensus 246 ~~~~~~~~~~~G~-p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 246 SDVYGEDKGGDGS-ARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHCGGGTSCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCc-HHHHHHHHHHHHHHH
Confidence 88888 64 557777777766544
No 106
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.09 E-value=1.1e-10 Score=126.00 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=51.4
Q ss_pred hHHH--HHHHHHhhhhhhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhh
Q 001227 682 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 682 ALLR--Rfe~q~e~~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r 750 (1119)
+++| ||++.+++++|+...|.+|++.|.. ..++ +++++..+|..+.||+++||+.+|..|+..|..+
T Consensus 170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp GGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5555 6677777777777777777776642 2234 5678899999999999999999999999888763
No 107
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=2.6e-09 Score=119.77 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=102.5
Q ss_pred CcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecCcccccccc
Q 001227 821 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSITSKWFG 894 (1119)
Q Consensus 821 G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el------g~~fi~V~~s~L~s~~~G 894 (1119)
|++++.+.|...+.. .+ .+.+||+||||+|||++|+++|+.+ ...++.++.+.- .
T Consensus 1 g~~~~~~~L~~~i~~-------------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-------------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----N 61 (305)
T ss_dssp ---CHHHHHHHHHHT-------------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----C
T ss_pred ChHHHHHHHHHHHHC-------------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----C
Confidence 456677777776652 12 3589999999999999999999874 346777775420 1
Q ss_pred chHHHHHHHHHHHHhcC----CeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 001227 895 EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 970 (1119)
Q Consensus 895 ~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~L 970 (1119)
..-..++.++..+...+ ..|+||||+|.|- ....+.|+..++. ++..+++|.+|+.+..+
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEe----p~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEE----PPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHS----CCTTEEEEEEESCGGGS
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhC----CCCCeEEEEEECChHhC
Confidence 23345778888776543 3699999999982 1123445555544 23567788888888999
Q ss_pred cHHHHhccccccccCCCCHHHHHHHHHHHH
Q 001227 971 DEAVVRRLPRRLMVNLPDAPNREKIIRVIL 1000 (1119)
Q Consensus 971 d~aLlrRF~~~I~v~lPd~eeR~eILk~ll 1000 (1119)
.+++++| .+.+..|+.++..++++..+
T Consensus 126 ~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999999 79999999999999888876
No 108
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.02 E-value=3e-10 Score=150.21 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=108.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhcccCC----------hhhhhc------CCC---------CCCCce--EEEEcCCCC
Q 001227 811 DIGVTFDDIGALENVKDTLKELVMLPLQR----------PELFCK------GQL---------TKPCKG--ILLFGPPGT 863 (1119)
Q Consensus 811 e~~~sfddI~G~e~ik~~L~e~v~~pL~~----------pelf~k------~~l---------~~P~~g--ILL~GPpGT 863 (1119)
...++|++++|+++.++.+.+.+.+|+.+ ++.|.. .++ ..+|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 44678999999999999999999998843 566655 221 124455 999999999
Q ss_pred hHHHHHHHHHHHh---CCcEEEEecCccc------------cccccc----hHHHHHHHHHHHHhcCCeEEEEccccccc
Q 001227 864 GKTMLAKAVATEA---GANFINISMSSIT------------SKWFGE----GEKYVKAVFSLASKIAPSVVFVDEVDSML 924 (1119)
Q Consensus 864 GKT~LArAIA~el---g~~fi~V~~s~L~------------s~~~G~----~e~~I~~lF~~A~k~~PsILfIDEID~L~ 924 (1119)
|||+||++++.+. |-|.+.|+..+.. .+|+++ +|+.++.+|..|+...|++||+|+++.|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999998876 5667777766543 567777 89999999999999999999999999998
Q ss_pred cCCC---CCc--hhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 001227 925 GRRE---NPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 966 (1119)
Q Consensus 925 ~~r~---s~~--~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~ 966 (1119)
+.+. ..+ ......+++++++..++++... .+|+|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eecc
Confidence 7732 111 1245566788888888876443 457777 5654
No 109
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.01 E-value=9.1e-10 Score=111.08 Aligned_cols=103 Identities=19% Similarity=0.304 Sum_probs=86.2
Q ss_pred ccccccCCCCceeeecceeeeecccccceeecCCC---------CcccceEEeEeecCC--cceeEEEEecCcceEEEcC
Q 001227 4 TYFTVFTGNSHLSMTGAVFTVGHNRQCDLYLKDPS---------ISKNLCRLRRIENGG--PSGALLEITGGKGEVEVNG 72 (1119)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~tvg~~~~~~~~l~d~~---------~~~~~c~l~~~~~~~--~~~~~le~~~~~~~v~vng 72 (1119)
+|++.....|++.+....++||++..||+.|.|+. +|..||+|.+...++ ..+-+-+.+.|| ++|||
T Consensus 32 ~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNG--T~VNg 109 (149)
T 1gxc_A 32 RLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNG--TFVNT 109 (149)
T ss_dssp EEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSC--EEETT
T ss_pred EEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCC--eEECC
Confidence 57777788899999999999999999999999995 999999998764321 145666654444 69999
Q ss_pred eecCCCceEEeecCCeEEecCCCCcceeeecccccc
Q 001227 73 NVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 108 (1119)
Q Consensus 73 ~~~~~~~~~~l~~gde~vf~~~~~~~yi~~~~~~~~ 108 (1119)
+.+.++..+.|+.||+|.||.+....|+|+.+..++
T Consensus 110 ~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~~~~~ 145 (149)
T 1gxc_A 110 ELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 145 (149)
T ss_dssp EECCTTCEEECCTTEEEEESSTTCEEEEEEETTCC-
T ss_pred EECCCCCeEECCCCCEEEECCCCCeEEEEEECCccc
Confidence 999999999999999999999877899999875544
No 110
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.00 E-value=9.4e-10 Score=120.61 Aligned_cols=125 Identities=26% Similarity=0.384 Sum_probs=84.8
Q ss_pred HHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCCC-----CEEEEeeccCCCcccccCCCC
Q 001227 559 NELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPG 625 (1119)
Q Consensus 559 ~~l~ev~~~esk~~p~Ilf~~die~~l~~--------~~~~~~~l~~~L~~L~g-----~vvvIgs~~~~d~~k~k~~~~ 625 (1119)
..+|+.... ..|.|+|+||++.+... +.+....+...+..|+| .++++++++
T Consensus 122 ~~~~~~~~~---~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~------------ 186 (278)
T 1iy2_A 122 RDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN------------ 186 (278)
T ss_dssp HHHHHHHHT---SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEES------------
T ss_pred HHHHHHHHh---cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecC------------
Confidence 344444433 57889999999984321 22333444444544443 578888888
Q ss_pred CceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccc
Q 001227 626 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 703 (1119)
Q Consensus 626 ~~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~ 703 (1119)
.|+.+|+ +++| ||++.+++++|+...|.+
T Consensus 187 ------------------~p~~ld~-------------------------------~l~r~~rf~~~i~i~~p~~~~r~~ 217 (278)
T 1iy2_A 187 ------------------RPDILDP-------------------------------ALLRPGRFDRQIAIDAPDVKGREQ 217 (278)
T ss_dssp ------------------CTTSSCH-------------------------------HHHSTTSSCCEEECCCCCHHHHHH
T ss_pred ------------------CchhCCH-------------------------------hHcCCCcCCeEEEeCCcCHHHHHH
Confidence 4445554 6655 666667777777777777
Q ss_pred hhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhh
Q 001227 704 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 749 (1119)
Q Consensus 704 Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~ 749 (1119)
|++.|.. ...+ +++++..+|..+.||+++||+.+|..|+..|..
T Consensus 218 il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 218 ILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 262 (278)
T ss_dssp HHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 7776542 2344 567789999999999999999999999988875
No 111
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.97 E-value=1e-09 Score=101.06 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCc
Q 001227 988 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVD 1067 (1119)
Q Consensus 988 d~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~ 1067 (1119)
+.++|.+||+.++++..+.+++|++.||..|+||||+||.++|++|+..|+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-------------------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--------------------------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 568999999999999988899999999999999999999999999999998862
Q ss_pred cccccHHHHHHHHHHhccccccccccchhhhHHH
Q 001227 1068 VRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1101 (1119)
Q Consensus 1068 ~r~Lt~eDF~~Al~kv~pS~s~e~~~~~~~v~W~ 1101 (1119)
...|+++||..|++++.++...... ...+..||
T Consensus 56 ~~~i~~~df~~Al~~v~~~~~~~~~-~~~y~~w~ 88 (88)
T 3vlf_B 56 RKVATEKDFLKAVDKVISGYKKFSS-TSRYMQYN 88 (88)
T ss_dssp CSSBCHHHHHHHHHHHTC----------------
T ss_pred cccCCHHHHHHHHHHHhcCcccccc-hhHHhccC
Confidence 2469999999999999988765532 23444775
No 112
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.95 E-value=9.4e-10 Score=101.01 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=71.0
Q ss_pred ccCCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 001227 983 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPL 1062 (1119)
Q Consensus 983 ~v~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~ 1062 (1119)
+-.+|+.++|.+||+.++++..+..++|++.||..|+||||+||.+||++|+..++++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--------------------- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--------------------- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc---------------------
Confidence 45689999999999999999888889999999999999999999999999999998862
Q ss_pred CCCCccccccHHHHHHHHHHhccc
Q 001227 1063 YSSVDVRPLKMDDFKYAHEQVCAS 1086 (1119)
Q Consensus 1063 ~~~~~~r~Lt~eDF~~Al~kv~pS 1086 (1119)
...|+++||..|++++.|.
T Consensus 66 -----~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 -----RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp -----CSEECHHHHHHHHHHHHCC
T ss_pred -----CCCCCHHHHHHHHHHHccC
Confidence 2579999999999998764
No 113
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.95 E-value=1.4e-09 Score=97.49 Aligned_cols=76 Identities=26% Similarity=0.453 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 001227 985 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYS 1064 (1119)
Q Consensus 985 ~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~ 1064 (1119)
++|+.++|.+||+.++++..+..+++++.||..|+||||+||.++|++|+..++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~------------------------ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE------------------------ 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------------------------
Confidence 58999999999999999988888999999999999999999999999999999885
Q ss_pred CCccccccHHHHHHHHHHhccc
Q 001227 1065 SVDVRPLKMDDFKYAHEQVCAS 1086 (1119)
Q Consensus 1065 ~~~~r~Lt~eDF~~Al~kv~pS 1086 (1119)
....|+++||..|++++...
T Consensus 57 --~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 57 --RRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp --TCSEECHHHHHHHHHHHHC-
T ss_pred --CCCCCCHHHHHHHHHHHHhc
Confidence 12579999999999998643
No 114
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.94 E-value=3e-09 Score=122.85 Aligned_cols=197 Identities=20% Similarity=0.225 Sum_probs=114.9
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 891 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~--- 891 (1119)
.+.|.....+.+.+.+.. . ......+||+|++||||+++|++|.... +.+|+.++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKK-------I-----SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCSHHHHHHHHHHHH-------H-----TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhccHHhhHHHHHHHH-------h-----cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 455555566666665542 1 1223469999999999999999998876 479999999875432
Q ss_pred --cccchHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 001227 892 --WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 962 (1119)
Q Consensus 892 --~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIa 962 (1119)
.+|.... .....|..|.. ++||||||+.| +...+..+.+++++-.....|-......++.||+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 277 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL-----SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILA 277 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC-----CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 2222110 12245666654 89999999988 4344555555544432221222222235788999
Q ss_pred ecCCC-------CCCcHHHHhccccccccCCCCHHHHHH----HHHHHHhhc----ccC----ChhcHHHHHHHcCCCcH
Q 001227 963 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELA----SDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 963 TTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~ll~k~----~l~----~d~dl~~LA~~TeGysg 1023 (1119)
|||.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.+. ... ++..++.|....=-.+.
T Consensus 278 at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNv 356 (387)
T 1ny5_A 278 ATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNV 356 (387)
T ss_dssp EESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHH
T ss_pred eCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHH
Confidence 99863 23445555566 356678888877643 445554432 111 12223333333222244
Q ss_pred HHHHHHHHHHHh
Q 001227 1024 SDLKNLCVTAAH 1035 (1119)
Q Consensus 1024 ~DL~~L~~~Aa~ 1035 (1119)
++|+++++.|+.
T Consensus 357 reL~~~i~~~~~ 368 (387)
T 1ny5_A 357 RELKNVIERAVL 368 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 577777776664
No 115
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.81 E-value=3.2e-09 Score=117.96 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=66.4
Q ss_pred CCCCeEEEEcChhhhhccCh----------hhHHHHHHHHhcC-------------CCCEEEEeeccCCCcccccCCCCC
Q 001227 570 KSSPLIVFVKDIEKSLTGNN----------DAYGALKSKLENL-------------PSNVVVIGSHTQLDSRKEKSHPGG 626 (1119)
Q Consensus 570 k~~p~Ilf~~die~~l~~~~----------~~~~~l~~~L~~L-------------~g~vvvIgs~~~~d~~k~k~~~~~ 626 (1119)
+..|.||||||+|++..+.. ++.+.|...|+.. ..+|+||+++|
T Consensus 97 ~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN------------- 163 (293)
T 3t15_A 97 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGN------------- 163 (293)
T ss_dssp TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECS-------------
T ss_pred cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecC-------------
Confidence 36899999999999554211 3446666666522 24799999999
Q ss_pred ceeeccCcchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHH--HHHHHHhhhhhhhhcccch
Q 001227 627 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 704 (1119)
Q Consensus 627 ~~~~~~~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfe~q~e~~Lpd~~gR~~I 704 (1119)
.|+.+++ |++| ||++.++ +|+...|.+|
T Consensus 164 -----------------~~~~ld~-------------------------------al~R~~R~d~~i~--~P~~~~r~~I 193 (293)
T 3t15_A 164 -----------------DFSTLYA-------------------------------PLIRDGRMEKFYW--APTREDRIGV 193 (293)
T ss_dssp -----------------SCCC--C-------------------------------HHHHHHHEEEEEE--CCCHHHHHHH
T ss_pred -----------------CcccCCH-------------------------------HHhCCCCCceeEe--CcCHHHHHHH
Confidence 3444554 7877 7777665 5788888888
Q ss_pred hHHHHHhhhCCCCcccchhhhcccCCCCHHHHHH
Q 001227 705 ISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEK 738 (1119)
Q Consensus 705 l~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~ 738 (1119)
++-|. ... ..+++.++..+.+|++++|+-
T Consensus 194 l~~~~--~~~---~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 194 CTGIF--RTD---NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHH--GGG---CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHhc--cCC---CCCHHHHHHHhCCCCcccHHH
Confidence 87553 222 345777888889999988863
No 116
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.80 E-value=5.7e-09 Score=94.60 Aligned_cols=75 Identities=27% Similarity=0.375 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCc
Q 001227 988 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVD 1067 (1119)
Q Consensus 988 d~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~ 1067 (1119)
+.++|.+||+.++++..+.++++++.||..|+||||+||.++|++|+..++++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------------------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--------------------------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 678999999999999888889999999999999999999999999999998852
Q ss_pred cccccHHHHHHHHHHhccccc
Q 001227 1068 VRPLKMDDFKYAHEQVCASVS 1088 (1119)
Q Consensus 1068 ~r~Lt~eDF~~Al~kv~pS~s 1088 (1119)
..+|+++||..|+++++|+.+
T Consensus 56 ~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CSSBCHHHHHHHHHHHCC---
T ss_pred cCCcCHHHHHHHHHHHccCch
Confidence 257999999999999999986
No 117
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=98.78 E-value=8.9e-09 Score=99.28 Aligned_cols=101 Identities=22% Similarity=0.372 Sum_probs=80.9
Q ss_pred cccccc--CCCCceeeecceeeeecccccceeecCC-CCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCce
Q 001227 4 TYFTVF--TGNSHLSMTGAVFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ 80 (1119)
Q Consensus 4 ~~~~~~--~~~~~~~~~~~~~tvg~~~~~~~~l~d~-~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~ 80 (1119)
+|++.. ...+.+.+....++||++..||+.|.|. .+|..||+|..-.++| .+-+.+ |+.--++|||+.+.++..
T Consensus 6 ~L~~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~-~~~l~D--~S~NGt~vng~~l~~~~~ 82 (116)
T 1lgp_A 6 RLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSG-QVTLED--TSTSGTVINKLKVVKKQT 82 (116)
T ss_dssp EECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTC-CEEEEE--CSSSCCCCCCCCCCCSSC
T ss_pred EEEEeCCCCCccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCC-eEEEEE--CCcCCcEECCEEcCCCCc
Confidence 465554 3567899999999999999999999885 8999999998643343 456666 544348999999999999
Q ss_pred EEeecCCeEEecCCC-----Ccceeeeccccc
Q 001227 81 VVLRGGDELVFSPSG-----KHSYIFQQLSDD 107 (1119)
Q Consensus 81 ~~l~~gde~vf~~~~-----~~~yi~~~~~~~ 107 (1119)
+.|+.||+|.||.+- ..+|+|+.+..+
T Consensus 83 ~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~~ 114 (116)
T 1lgp_A 83 CPLQTGDVIYLVYRKNEPEHNVAYLYESLSEK 114 (116)
T ss_dssp CCCCTTCEEEEECCSSCGGGCEEEECCCSCC-
T ss_pred EECCCCCEEEEeccCCCCCceEEEEEEccccc
Confidence 999999999999874 678999976543
No 118
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.75 E-value=2e-08 Score=138.33 Aligned_cols=139 Identities=23% Similarity=0.393 Sum_probs=93.4
Q ss_pred ceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEecCccccccccchHHHHHHHHHHH-H--------------hcCCeEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAV-ATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA-S--------------KIAPSVVF 916 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAI-A~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A-~--------------k~~PsILf 916 (1119)
+++||+||||||||++|+.+ +...+.+++.++++...+ ...+...+... . ..++.|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 68999999999999999554 444478888888876433 12334444332 1 11236999
Q ss_pred EccccccccCCCCCchhHHHHHHHHhhhhhccCCccc------CCccEEEEEecCCC-----CCCcHHHHhccccccccC
Q 001227 917 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRP-----FDLDEAVVRRLPRRLMVN 985 (1119)
Q Consensus 917 IDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k------~~~~VlVIaTTN~p-----~~Ld~aLlrRF~~~I~v~ 985 (1119)
||||+.-...+ .+.+. ...++.+++. ..++... .-.++.+|||||++ ..++++++||| .++.++
T Consensus 1342 iDEinmp~~d~--yg~q~-~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~ 1416 (2695)
T 4akg_A 1342 CDEINLPKLDK--YGSQN-VVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLG 1416 (2695)
T ss_dssp EETTTCSCCCS--SSCCH-HHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECC
T ss_pred ecccccccccc--cCchh-HHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeC
Confidence 99998542222 12222 2233344432 2222111 11468999999999 48999999999 789999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 001227 986 LPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 986 lPd~eeR~eILk~ll~k 1002 (1119)
.|+.+++..|+..++..
T Consensus 1417 ~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998865
No 119
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.74 E-value=2.3e-08 Score=114.80 Aligned_cols=197 Identities=22% Similarity=0.265 Sum_probs=112.0
Q ss_pred cccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCccccc----
Q 001227 818 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSK---- 891 (1119)
Q Consensus 818 dI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~--~fi~V~~s~L~s~---- 891 (1119)
+++|.......+.+.+... . .....+||+|++||||+.+|+++....+. +|+.++|+.+...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~-------a-----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI-------A-----KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH-------H-----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred cccccchHHHHHHhhhhhh-------h-----ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 4566666666666555420 1 11246999999999999999999887743 3999999875332
Q ss_pred -cccchH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 001227 892 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 963 (1119)
Q Consensus 892 -~~G~~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaT 963 (1119)
.||... ..-...|+.|.. ++||||||+.| +...|..+.+++++-....-|-......++.+|+|
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~a 269 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL-----DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISA 269 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS-----CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEE
T ss_pred HhcCccccccCCcccccCChHhhcCC---CeEEecChhhC-----CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEe
Confidence 222111 011235666654 89999999998 44445555555543322211211112346889999
Q ss_pred cCCC-------CCCcHHHHhccccccccCCCCHHHHH----HHHHHHHhhcc----cC----ChhcHHHHHHHcCCCcHH
Q 001227 964 TNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEE----LA----SDVDLEGIANMADGYSGS 1024 (1119)
Q Consensus 964 TN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~----eILk~ll~k~~----l~----~d~dl~~LA~~TeGysg~ 1024 (1119)
||.. ..+.+.+..|+ ..+.+.+|...+|. .++++++.+.. .. ++..++.|....=.-+.+
T Consensus 270 t~~~l~~~v~~g~fr~dL~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvr 348 (368)
T 3dzd_A 270 TNKNLEEEIKKGNFREDLYYRL-SVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVR 348 (368)
T ss_dssp ESSCHHHHHHTTSSCHHHHHHH-TSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHH
T ss_pred cCCCHHHHHHcCCccHHHHHHh-CCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHH
Confidence 9853 23445666666 35667788877663 45555554421 11 122223333322122446
Q ss_pred HHHHHHHHHHh
Q 001227 1025 DLKNLCVTAAH 1035 (1119)
Q Consensus 1025 DL~~L~~~Aa~ 1035 (1119)
+|+++++.|+.
T Consensus 349 eL~n~i~~~~~ 359 (368)
T 3dzd_A 349 ELKNLIERAVI 359 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 120
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=98.72 E-value=2.5e-08 Score=98.44 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=65.8
Q ss_pred cceeeeecccccceeecCCCCcccceEEeEe--------ecCCcceeEEEE-ecCcceEEEcCeecCCCceEEeecCCeE
Q 001227 19 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRI--------ENGGPSGALLEI-TGGKGEVEVNGNVHPKDSQVVLRGGDEL 89 (1119)
Q Consensus 19 ~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~--------~~~~~~~~~le~-~~~~~~v~vng~~~~~~~~~~l~~gde~ 89 (1119)
.+.+|||++..||+.|.|+++|..||.|.+- ...+..+-+.+. +-|| ++|||+.+.++..+.|+.||+|
T Consensus 40 ~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNG--T~vNg~ri~~~~~~~L~~GD~I 117 (130)
T 4h87_A 40 TSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHG--TFLNKTRIPPRTYCRVHVGHVV 117 (130)
T ss_dssp CSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSC--EEETTEECCTTCCEECCTTCEE
T ss_pred CceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCc--eEECCEECCCCceeECCCCCEE
Confidence 4668999999999999999999999999642 233445566665 4455 8999999999999999999999
Q ss_pred EecCCCCcceeee
Q 001227 90 VFSPSGKHSYIFQ 102 (1119)
Q Consensus 90 vf~~~~~~~yi~~ 102 (1119)
.||.+-+ .||||
T Consensus 118 ~~G~str-~yvl~ 129 (130)
T 4h87_A 118 RFGGSTR-LFILQ 129 (130)
T ss_dssp EETTCSE-EEEEE
T ss_pred EECCceE-EEEEc
Confidence 9998866 59887
No 121
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=98.69 E-value=3.8e-08 Score=96.57 Aligned_cols=96 Identities=22% Similarity=0.246 Sum_probs=79.8
Q ss_pred ccccccCCCCceeeecc-------------eeeeecccccceeecCC-CCcccceEEeEeecCCcceeEEEEecCcceEE
Q 001227 4 TYFTVFTGNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVE 69 (1119)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-------------~~tvg~~~~~~~~l~d~-~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~ 69 (1119)
+|.++..++|++.+... .++||++..||+.|.|+ .+|..||+|..-+.+ .+-+-+.+.|+ ++
T Consensus 7 ~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~~g--~~~l~DlS~NG--T~ 82 (127)
T 1g6g_A 7 RVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG--NLLLNDISTNG--TW 82 (127)
T ss_dssp EEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECTTS--CEEEEECCSSC--CE
T ss_pred EEEECCCCCCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECCCC--cEEEEECCcCC--eE
Confidence 68889999999999877 99999999999999998 599999999864333 35666663444 79
Q ss_pred EcCeecCCCceEEeecCCeEEecCCC---Ccceeeec
Q 001227 70 VNGNVHPKDSQVVLRGGDELVFSPSG---KHSYIFQQ 103 (1119)
Q Consensus 70 vng~~~~~~~~~~l~~gde~vf~~~~---~~~yi~~~ 103 (1119)
|||+.+.++..+.|+.||+|.||... .-.|+|+.
T Consensus 83 vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~~i~f~~~~ 119 (127)
T 1g6g_A 83 LNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFI 119 (127)
T ss_dssp ETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEE
T ss_pred ECCEEcCCCCeEEcCCCCEEEECCCccCceEEEEEEe
Confidence 99999999999999999999999875 22577764
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.64 E-value=1.2e-07 Score=95.10 Aligned_cols=106 Identities=24% Similarity=0.317 Sum_probs=69.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 928 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 928 (1119)
...++|+||+|+|||+|+++++..+ |..++.++..++... +....|.+|+|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~---- 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG---- 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC----
Confidence 4579999999999999999999887 777888988776543 112357899999998762
Q ss_pred CCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc--HHHHhccccccccC
Q 001227 929 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD--EAVVRRLPRRLMVN 985 (1119)
Q Consensus 929 s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld--~aLlrRF~~~I~v~ 985 (1119)
...++.+..+++.+... ...++||++...+..+. +.+.+|+..-..+.
T Consensus 97 -~~~~~~l~~li~~~~~~--------g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 97 -NEEQALLFSIFNRFRNS--------GKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp -SHHHHHHHHHHHHHHHH--------TCCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred -hHHHHHHHHHHHHHHHc--------CCcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 22244444444444311 11224444433554333 88999986544444
No 123
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.62 E-value=5.8e-08 Score=99.16 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=58.4
Q ss_pred CCCcccccCc----HHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEe
Q 001227 813 GVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINIS 884 (1119)
Q Consensus 813 ~~sfddI~G~----e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~ 884 (1119)
..+|+++.+. ..+.+.+.+++.. .. ..+..+++|+||+|||||+|+++++..+ |..++.++
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN----------FN-PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS----------CC-GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh----------cc-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4578887653 3344444444432 11 1224689999999999999999999876 66777777
Q ss_pred cCccccccccchHH-HHHHHHHHHHhcCCeEEEEcccccc
Q 001227 885 MSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 885 ~s~L~s~~~G~~e~-~I~~lF~~A~k~~PsILfIDEID~L 923 (1119)
+.++...+...... ....++.. -..|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 66654332111000 00011111 225789999999743
No 124
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.60 E-value=1.8e-07 Score=109.76 Aligned_cols=152 Identities=19% Similarity=0.171 Sum_probs=90.8
Q ss_pred ccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEec--Cc---ccccc
Q 001227 819 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV-ATEAGANFINISM--SS---ITSKW 892 (1119)
Q Consensus 819 I~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAI-A~elg~~fi~V~~--s~---L~s~~ 892 (1119)
|.|++.+|..|.-.+...-.+ .+...+|||.|+||| ||+||+++ ++.+.. .+.... +. +....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k---------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK---------NSERLHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS---------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc---------cCCceeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEEE
Confidence 678899887776555321110 111237999999999 99999999 654432 222211 11 11110
Q ss_pred ccc-hHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC---
Q 001227 893 FGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--- 968 (1119)
Q Consensus 893 ~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~--- 968 (1119)
.+. +-..-...+..|.. +|+|||||+.+ ++..+..+.+.+++-...+.|. .-+.++.||||+|+.+
T Consensus 284 r~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----~~~~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd 353 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADG---GILAVDHLEGA-----PEPHRWALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWP 353 (506)
T ss_dssp EESSSEEEEECHHHHTTT---SEEEEECCTTC-----CHHHHHHHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--C
T ss_pred EcCCCcccCCCeeEEcCC---CeeehHhhhhC-----CHHHHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccC
Confidence 000 00000123445544 89999999987 4456677777777666666655 3457899999999875
Q ss_pred --------CCcHHHHhccccc-cccCCCCHHH
Q 001227 969 --------DLDEAVVRRLPRR-LMVNLPDAPN 991 (1119)
Q Consensus 969 --------~Ld~aLlrRF~~~-I~v~lPd~ee 991 (1119)
.|++++++||+.. +.++.|+.++
T Consensus 354 ~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 354 SDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred CCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 7899999999753 3456666443
No 125
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.57 E-value=1.4e-06 Score=96.86 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=111.9
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-----
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 889 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~----- 889 (1119)
....++|.++..+.|.+ +. . ..++|+||+|+|||+|++.+++..+..++.+++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~--------------~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR--------------A---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC--------------S---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CHHHhcChHHHHHHHHH-hc--------------C---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 45678999988888877 53 1 3799999999999999999999988778888875420
Q ss_pred c--cccc---------------------------------c------hHHHHHHHHHHHHhc--CCeEEEEccccccccC
Q 001227 890 S--KWFG---------------------------------E------GEKYVKAVFSLASKI--APSVVFVDEVDSMLGR 926 (1119)
Q Consensus 890 s--~~~G---------------------------------~------~e~~I~~lF~~A~k~--~PsILfIDEID~L~~~ 926 (1119)
+ .... . ....+..++...... .|.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 0 0000 0 001233444444432 3889999999987431
Q ss_pred CCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH---------HHHhccccccccCCCCHHHHHHHHH
Q 001227 927 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE---------AVVRRLPRRLMVNLPDAPNREKIIR 997 (1119)
Q Consensus 927 r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~---------aLlrRF~~~I~v~lPd~eeR~eILk 997 (1119)
. .......+ ..+... . .++.+|.|++....+.. .+..|+...+.+...+.++..+++.
T Consensus 153 ~-~~~~~~~l----~~~~~~---~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~ 219 (357)
T 2fna_A 153 R-GVNLLPAL----AYAYDN---L-----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLR 219 (357)
T ss_dssp T-TCCCHHHH----HHHHHH---C-----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHH
T ss_pred C-chhHHHHH----HHHHHc---C-----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHH
Confidence 1 11111222 222211 1 24566666654221111 1223544678899999999999998
Q ss_pred HHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHH
Q 001227 998 VILAKEELASDVDLEGIANMADGYSGSDLKNLCVT 1032 (1119)
Q Consensus 998 ~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~ 1032 (1119)
..+.......+ +...+...+.|+.. -+..++..
T Consensus 220 ~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 220 RGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp HHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHHH
T ss_pred HHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHHH
Confidence 87764333322 23788888988644 45555543
No 126
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=98.54 E-value=2.5e-07 Score=93.41 Aligned_cols=88 Identities=27% Similarity=0.486 Sum_probs=69.3
Q ss_pred ceeee-cceeeeecccccceeecCCCCcccceEEeEee---c--CCcceeEEEEecCcceEEEcCeecCCCceEEeecCC
Q 001227 14 HLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIE---N--GGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGD 87 (1119)
Q Consensus 14 ~~~~~-~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~---~--~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gd 87 (1119)
.+.+. ...+|||++..||+.|.|+.+|..+|+|...+ . .+..+-|-+.+.|| ++|||+.+.++ .+.|+.||
T Consensus 31 ~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NG--T~VNg~~i~~~-~~~L~~GD 107 (151)
T 2jqj_A 31 KVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNG--TFINGNRLVKK-DYILKNGD 107 (151)
T ss_dssp EEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSC--EEETTEECCSS-CEEECSSE
T ss_pred EEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCC--eEECCEEcCCC-ceECCCCC
Confidence 45666 38899999999999999999999999999741 1 23345666664444 89999999998 99999999
Q ss_pred eEEecCCCCcceeeecccc
Q 001227 88 ELVFSPSGKHSYIFQQLSD 106 (1119)
Q Consensus 88 e~vf~~~~~~~yi~~~~~~ 106 (1119)
+|.||.. ..|+|.-...
T Consensus 108 ~I~lG~~--~~~~f~~~~~ 124 (151)
T 2jqj_A 108 RIVFGKS--CSFLFKYASS 124 (151)
T ss_dssp EEEETTT--EEEEEEECSS
T ss_pred EEEECCC--cEEEEEEcCC
Confidence 9999873 3577765433
No 127
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.53 E-value=1.3e-07 Score=98.03 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=47.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~-e~~I~~lF~~A~k~~PsILfIDEID~L 923 (1119)
.+++|+||+|||||+||+++++.+ +.+++.++++++........ ...+..++..... +.+|||||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 689999999999999999999887 67888888876544321110 0011222333332 469999999765
No 128
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.46 E-value=2.5e-06 Score=94.69 Aligned_cols=188 Identities=17% Similarity=0.139 Sum_probs=111.2
Q ss_pred CcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-----
Q 001227 815 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 889 (1119)
Q Consensus 815 sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~----- 889 (1119)
.-..++|.+...+.|.+.+.. + ..++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~-----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y-----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C-----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C-----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 345789999999999887651 1 4799999999999999999999886 6666654321
Q ss_pred -------c---ccc-------------------------cchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCchhH
Q 001227 890 -------S---KWF-------------------------GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHE 934 (1119)
Q Consensus 890 -------s---~~~-------------------------G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~~ 934 (1119)
. ..+ ......+..+...+....|.+|+|||++.+..... .....
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~~~ 150 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGGKE 150 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTTHH
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cchhh
Confidence 0 000 01112222232333333489999999998742100 00111
Q ss_pred HHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH---------HHHhccccccccCCCCHHHHHHHHHHHHhhccc
Q 001227 935 AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE---------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL 1005 (1119)
Q Consensus 935 ~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~---------aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l 1005 (1119)
....+..+... . .++.+|.|+.....+.. .+..|+...+.+.+.+.++-.+++...+.....
T Consensus 151 -~~~~L~~~~~~---~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 151 -LLALFAYAYDS---L-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp -HHHHHHHHHHH---C-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred -HHHHHHHHHHh---c-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 12222222211 1 24566666543211111 122344457888999999999999887665433
Q ss_pred C-ChhcHHHHHHHcCCCcHHHHHHHHH
Q 001227 1006 A-SDVDLEGIANMADGYSGSDLKNLCV 1031 (1119)
Q Consensus 1006 ~-~d~dl~~LA~~TeGysg~DL~~L~~ 1031 (1119)
. ++..+..+...+.|+. .-+..++.
T Consensus 222 ~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 222 DVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp CCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 2 4556778888888864 34555544
No 129
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.41 E-value=6.2e-08 Score=87.83 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCccc
Q 001227 990 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVR 1069 (1119)
Q Consensus 990 eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~DL~~L~~~Aa~~airrlle~~~~e~~~a~~~~~~~~~~~~~~~~r 1069 (1119)
++|.+||+.++++..+.+++|++.||..|+||||+||.++|++|+..++++. ..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~--------------------------~~ 54 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--------------------------RY 54 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT--------------------------CS
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------cC
Confidence 4789999999999888889999999999999999999999999999998851 24
Q ss_pred cccHHHHHHHHHHhc
Q 001227 1070 PLKMDDFKYAHEQVC 1084 (1119)
Q Consensus 1070 ~Lt~eDF~~Al~kv~ 1084 (1119)
.|+++||..|++++.
T Consensus 55 ~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 55 VILQSDLEEAYATQV 69 (82)
T ss_dssp EECHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHHH
Confidence 799999999999985
No 130
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.41 E-value=1e-07 Score=87.39 Aligned_cols=75 Identities=8% Similarity=-0.043 Sum_probs=60.0
Q ss_pred hhhhhhcccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHH
Q 001227 694 DVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN 773 (1119)
Q Consensus 694 ~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~ 773 (1119)
+.||.++|.+||++|++.+... ++++++.||..|.||+||||+.||++|+..|+.+.. ..+...
T Consensus 9 ~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~---------------~~I~~~ 72 (86)
T 2krk_A 9 SHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR---------------VHVTQE 72 (86)
T ss_dssp CCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC---------------SEECHH
T ss_pred CCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC---------------CCCCHH
Confidence 5799999999999998633222 689999999999999999999999999999998541 235667
Q ss_pred HHHhhhhhhhh
Q 001227 774 ILQGIQSESKS 784 (1119)
Q Consensus 774 df~~a~~eik~ 784 (1119)
||..+...+++
T Consensus 73 df~~Al~~v~p 83 (86)
T 2krk_A 73 DFEMAVAKVMQ 83 (86)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcc
Confidence 77777665543
No 131
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=98.33 E-value=9.7e-07 Score=87.13 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=63.7
Q ss_pred ceeeecceeeeecccccceeecCCCCcccceEEeEeec-CCc-ceeEEEE------ecCcceEEEcCeecCCCceEEeec
Q 001227 14 HLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIEN-GGP-SGALLEI------TGGKGEVEVNGNVHPKDSQVVLRG 85 (1119)
Q Consensus 14 ~~~~~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~-~~~-~~~~le~------~~~~~~v~vng~~~~~~~~~~l~~ 85 (1119)
.+.+....+|||++..||+.|.|+.+|..+|+|..... .|. .+-+.+. +-|| ++|||+.+.+ +.|+.
T Consensus 24 ~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NG--T~vNg~~i~~---~~L~~ 98 (131)
T 3hx1_A 24 EVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNG--LMINGKKVQE---HIIQT 98 (131)
T ss_dssp EEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSC--EEETTEEESE---EECCT
T ss_pred EEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCc--eEECCEEeEe---EECCC
Confidence 45677788999999999999999999999999986532 232 4555565 4455 9999999986 99999
Q ss_pred CCeEEecCCCCcceeeecc
Q 001227 86 GDELVFSPSGKHSYIFQQL 104 (1119)
Q Consensus 86 gde~vf~~~~~~~yi~~~~ 104 (1119)
||+|.||.. .++|.++
T Consensus 99 GD~I~iG~~---~~~~~~~ 114 (131)
T 3hx1_A 99 GDEIVMGPQ---VSVRYEY 114 (131)
T ss_dssp TCEEECSTT---CEEEEEE
T ss_pred CCEEEECCE---EEEEEEE
Confidence 999999765 4455544
No 132
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=98.33 E-value=1.7e-06 Score=86.05 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=68.7
Q ss_pred CCceeee-cceeeeecccccceeecCCC----CcccceEEeEeecCCcceeEEEE-ecCcceEEEcCeecCCCceEEeec
Q 001227 12 NSHLSMT-GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEI-TGGKGEVEVNGNVHPKDSQVVLRG 85 (1119)
Q Consensus 12 ~~~~~~~-~~~~tvg~~~~~~~~l~d~~----~~~~~c~l~~~~~~~~~~~~le~-~~~~~~v~vng~~~~~~~~~~l~~ 85 (1119)
...+.+. ...+|||++..||+.|.|+. +|..||+|...+ +| .+-+.+. +-|+ ++|||+.+.++..+.|+.
T Consensus 19 ~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g-~~~l~Dl~S~NG--T~vNg~~l~~~~~~~L~~ 94 (138)
T 2pie_A 19 AGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EG-QWTIMDNKSLNG--VWLNRARLEPLRVYSIHQ 94 (138)
T ss_dssp SCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECT-TS-CEEEEECSCSSC--EEETTEECCTTCCEECCT
T ss_pred CCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcC-CC-cEEEEECCCCCC--eEECCEEcCCCCcEECCC
Confidence 3456676 67899999999999999999 999999998643 32 3445554 3344 899999999999999999
Q ss_pred CCeEEecCC--C--Ccceeeec
Q 001227 86 GDELVFSPS--G--KHSYIFQQ 103 (1119)
Q Consensus 86 gde~vf~~~--~--~~~yi~~~ 103 (1119)
||+|.||.+ + ...|.|+.
T Consensus 95 GD~I~lG~~~~~~~~~~f~~~~ 116 (138)
T 2pie_A 95 GDYIQLGVPLENKENAEYEYEV 116 (138)
T ss_dssp TCEEEESCCCTTCSSCSEEEEE
T ss_pred CCEEEECCCCCCCceEEEEEEe
Confidence 999999986 2 23455554
No 133
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=98.33 E-value=1.4e-06 Score=89.12 Aligned_cols=80 Identities=26% Similarity=0.311 Sum_probs=65.4
Q ss_pred eeeeecccccceeecCC-CCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEecCCC---C
Q 001227 21 VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG---K 96 (1119)
Q Consensus 21 ~~tvg~~~~~~~~l~d~-~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~~~~---~ 96 (1119)
.++||++..||+.|.|+ .+|..||+|.+-+.| .+-+-+.+.|| ++|||+.+.++..+.|+.||+|.||... .
T Consensus 65 ~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~~g--~~~l~DlS~NG--T~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~ 140 (164)
T 1g3g_A 65 VWTFGRNPACDYHLGNISRLSNKHFQILLGEDG--NLLLNDISTNG--TWLNGQKVEKNSNQLLSQGDEITVGVGVESDI 140 (164)
T ss_dssp EEEEESSSSSSEECCCCTTTTSSCEEEEECSTT--CEEEEECCSSC--EEETTEEECTTEEEECCTTCEEEESCSSTTSC
T ss_pred cEEECCCCCCCEEeCCcCCcChhHEEEEECCCC--CEEEEECCCCC--eEECCEEcCCCCceEcCCCCEEEECCCCCCCc
Confidence 79999999999999998 699999999864333 34566664444 8999999999999999999999999974 3
Q ss_pred cceeeecc
Q 001227 97 HSYIFQQL 104 (1119)
Q Consensus 97 ~~yi~~~~ 104 (1119)
-.|+|...
T Consensus 141 ~~f~~~~~ 148 (164)
T 1g3g_A 141 LSLVIFIN 148 (164)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 46777643
No 134
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.31 E-value=3.2e-07 Score=103.27 Aligned_cols=111 Identities=15% Similarity=0.241 Sum_probs=66.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 930 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~--fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~ 930 (1119)
..+||+||||+|||+||.++|...+.+ |+.+...+....+....+..+..++..+.+.. +||||+++.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 458999999999999999999876544 55553233333333445666666777666654 99999999985433220
Q ss_pred ----chhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 001227 931 ----GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 972 (1119)
Q Consensus 931 ----~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 972 (1119)
.....+++++..|...... .++.+|+++|. ...++
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k~------~gvtVIlttnp-~s~de 240 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAAS------RGCVVIASLNP-TSNDD 240 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHHH------HTCEEEEECCC-SSCSS
T ss_pred cccchHHHHHHHHHHHHHHHHhh------CCCEEEEEeCC-cccch
Confidence 0122344444444433221 34678888884 34443
No 135
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.30 E-value=5.6e-07 Score=94.88 Aligned_cols=127 Identities=14% Similarity=0.196 Sum_probs=78.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH--------hC-CcEEEEecCccccccc----------cchHH--HHHHHHHHH--Hh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE--------AG-ANFINISMSSITSKWF----------GEGEK--YVKAVFSLA--SK 909 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e--------lg-~~fi~V~~s~L~s~~~----------G~~e~--~I~~lF~~A--~k 909 (1119)
.-.|++|+||||||++|.+++.. .| .+++..++..+....+ ..... ....++..+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 36899999999999999886544 34 6676777766543222 11000 012233321 12
Q ss_pred cCCeEEEEccccccccCCCC-CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCC
Q 001227 910 IAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPD 988 (1119)
Q Consensus 910 ~~PsILfIDEID~L~~~r~s-~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd 988 (1119)
...+||+|||++.+++.+.. .... +++..+ ..- ....+-||.+|+.+..|+..+++|+...+++..|.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~----rll~~l----~~~---r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIP----ENVQWL----NTH---RHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCC----HHHHGG----GGT---TTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECS
T ss_pred cCceEEEEEChhhhccCccccchhH----HHHHHH----Hhc---CcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcc
Confidence 34689999999999865522 1111 122222 211 12345677788889999999999998888887765
Q ss_pred HH
Q 001227 989 AP 990 (1119)
Q Consensus 989 ~e 990 (1119)
..
T Consensus 155 ~~ 156 (199)
T 2r2a_A 155 MG 156 (199)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 136
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.29 E-value=2.5e-06 Score=117.89 Aligned_cols=132 Identities=18% Similarity=0.208 Sum_probs=95.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 932 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 932 (1119)
.++++.||+|||||.+++++|+.+|.+++.++|.+-+. ...+..+|..+.+.. +++++||++++ .+..
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~-----~~ev 713 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRL-----DEKV 713 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSS-----CHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhc-----ChHH
Confidence 57899999999999999999999999999999987433 245677777776654 89999999977 2223
Q ss_pred hHHHHHHHHhhhhhc---------cCCcccCCccEEEEEecCC----CCCCcHHHHhccccccccCCCCHHHHHHHHH
Q 001227 933 HEAMRKMKNEFMVNW---------DGLRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 997 (1119)
Q Consensus 933 ~~~l~~ll~~Ll~~l---------dgl~~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk 997 (1119)
...+...+..+...+ .|..-.-...+.|++|.|+ ...|++++++|| +.+.+..|+.+...+|+-
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 333322222222221 1211122356778888884 457999999999 679999999988887753
No 137
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=98.28 E-value=1.8e-06 Score=87.91 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=70.0
Q ss_pred CCceeeecce--eeeecccccceeecCCCCcccceEEeEee--cCC----------cceeEEEEecCcceEEEcCeecCC
Q 001227 12 NSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIE--NGG----------PSGALLEITGGKGEVEVNGNVHPK 77 (1119)
Q Consensus 12 ~~~~~~~~~~--~tvg~~~~~~~~l~d~~~~~~~c~l~~~~--~~~----------~~~~~le~~~~~~~v~vng~~~~~ 77 (1119)
...+.+.... ++||++..||+.|.|+.+|..||+|.... ++. ..+-+.+.+-|| ++|||+.+.+
T Consensus 17 ~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNG--T~VNg~ri~~ 94 (158)
T 1dmz_A 17 QESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNV--SYLNNNRMIQ 94 (158)
T ss_dssp CCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTC--CEETTEECCS
T ss_pred ceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECCcCC--eEECCEEcCC
Confidence 4567777666 99999999999999999999999998653 111 345667764444 7999999999
Q ss_pred CceEEeecCCeEEecCC--CCcceeeec
Q 001227 78 DSQVVLRGGDELVFSPS--GKHSYIFQQ 103 (1119)
Q Consensus 78 ~~~~~l~~gde~vf~~~--~~~~yi~~~ 103 (1119)
+..+.|+.||+|.|+.. |...+.|..
T Consensus 95 ~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 122 (158)
T 1dmz_A 95 GTKFLLQDGDEIKIIWDKNNKFVIGFKV 122 (158)
T ss_dssp SEEEECCSSCCEESCCCTTTTCCCCEEE
T ss_pred CceEEcCCCCEEEEeecCCCCEEEEEEE
Confidence 99999999999999433 444555653
No 138
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=98.28 E-value=2.2e-06 Score=86.94 Aligned_cols=83 Identities=25% Similarity=0.460 Sum_probs=63.4
Q ss_pred eecceeeeeccc---ccceeecCCCCcccceEEeEeecCCc-ceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEec
Q 001227 17 MTGAVFTVGHNR---QCDLYLKDPSISKNLCRLRRIENGGP-SGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFS 92 (1119)
Q Consensus 17 ~~~~~~tvg~~~---~~~~~l~d~~~~~~~c~l~~~~~~~~-~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~ 92 (1119)
+.....+||+.. .||+.|.++.||..||.|..-..++. .+.+++..... -++|||+.+.+ .+.|+.||+|.||
T Consensus 58 L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~n-gt~VNG~~i~~--~~~L~~GD~I~~G 134 (154)
T 4ejq_A 58 IKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGA-DTYVNGKKVTE--PSILRSGNRIIMG 134 (154)
T ss_dssp CCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTC-CEEETTEECCS--CEECCTTCEEEET
T ss_pred eCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCC-ceEECCEEcCC--ceECCCCCEEEEC
Confidence 456688999965 79999999999999999997654433 34455553333 39999999965 5899999999997
Q ss_pred CCCCcceeeecc
Q 001227 93 PSGKHSYIFQQL 104 (1119)
Q Consensus 93 ~~~~~~yi~~~~ 104 (1119)
.. |-|.|..+
T Consensus 135 ~~--~~Frf~~P 144 (154)
T 4ejq_A 135 KS--HVFRFNHP 144 (154)
T ss_dssp TT--EEEEEECH
T ss_pred Cc--EEEEEcCh
Confidence 43 66788643
No 139
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.21 E-value=6e-07 Score=80.36 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=49.2
Q ss_pred hhhhhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhh
Q 001227 694 DVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 694 ~Lpd~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r 750 (1119)
|+||..+|.+|+++|+. ..++ ++++++.||..|.||+|+||+.+|++|+..|+.+
T Consensus 1 plPd~~~R~~Il~~~l~--~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSR--KMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHT--TSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhc--CCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999975 2233 6889999999999999999999999999999985
No 140
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=98.18 E-value=3.5e-06 Score=78.98 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=63.4
Q ss_pred CCceeeecceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEe
Q 001227 12 NSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVF 91 (1119)
Q Consensus 12 ~~~~~~~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf 91 (1119)
...+++....++||++..||+.|.|+.+|..||+|..- +| . ..|+=.|+..-++|||+.+. .+.|+.||+|.|
T Consensus 15 g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~-~-~~l~Dl~S~nGt~vng~~i~---~~~L~~gd~i~i 87 (100)
T 3po8_A 15 GRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQ-V-ALLADLNSTNGTTVNNAPVQ---EWQLADGDVIRL 87 (100)
T ss_dssp CCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC--SS-C-EEEEECSCSSCCEETTEECS---EEECCTTCEEEE
T ss_pred CcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe--CC-E-EEEEECCCCCCEEECCEECc---eEECCCCCEEEE
Confidence 34567777889999999999999999999999999953 33 2 45555554333999999997 689999999999
Q ss_pred cCCCCcceeee
Q 001227 92 SPSGKHSYIFQ 102 (1119)
Q Consensus 92 ~~~~~~~yi~~ 102 (1119)
|. ..+.|+
T Consensus 88 G~---~~~~~~ 95 (100)
T 3po8_A 88 GH---SEIIVR 95 (100)
T ss_dssp TT---EEEEEE
T ss_pred CC---EEEEEE
Confidence 65 355554
No 141
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.17 E-value=1.2e-06 Score=98.01 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=45.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccc-hHHHHHHHHHHHHhcCCeEEEEcccccc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s~L~s~~~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L 923 (1119)
..+++|+||||||||+||.++|+++ +.+++.++++++....... ........+.... ...+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 4689999999999999999999865 4788888887655432211 0111112222222 3469999999654
No 142
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=98.16 E-value=6.2e-06 Score=79.32 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=65.3
Q ss_pred CCceeeecceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEe
Q 001227 12 NSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVF 91 (1119)
Q Consensus 12 ~~~~~~~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf 91 (1119)
...+.+....++||++..||+.|.|+.+|..||+|... ++ . ..|+=.|+.--++|||+.+. .+.|+.||+|.|
T Consensus 23 g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~-~-~~l~Dl~S~nGt~vng~~i~---~~~L~~gd~i~i 95 (115)
T 2xt9_B 23 GSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE--GG-E-FQVVDVGSLNGTYVNREPVD---SAVLANGDEVQI 95 (115)
T ss_dssp TCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE--TT-E-EEEEECSCSSCEEETTEECS---EEEECTTCEEEE
T ss_pred CeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE--CC-E-EEEEECCCCCCeEECCEEcc---eEECCCCCEEEE
Confidence 34567778899999999999999999999999999964 32 3 44555554434899999997 589999999999
Q ss_pred cCCCCcceeeeccc
Q 001227 92 SPSGKHSYIFQQLS 105 (1119)
Q Consensus 92 ~~~~~~~yi~~~~~ 105 (1119)
|. ..+.|+..+
T Consensus 96 G~---~~l~~~~~~ 106 (115)
T 2xt9_B 96 GK---FRLVFLTGP 106 (115)
T ss_dssp TT---EEEEEEC--
T ss_pred CC---EEEEEEeCC
Confidence 65 467776543
No 143
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.13 E-value=1.4e-06 Score=80.02 Aligned_cols=71 Identities=14% Similarity=0.024 Sum_probs=57.0
Q ss_pred hhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHH
Q 001227 697 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 775 (1119)
Q Consensus 697 d~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df 775 (1119)
|..+|.+|+++|++- -++ ++++++.||..|.||+||||+.+|++|+..|+.+... .+...||
T Consensus 2 d~~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~---------------~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK---------------VATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTT--SCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCS---------------SBCHHHH
T ss_pred CHHHHHHHHHHHHCC--CCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccc---------------cCCHHHH
Confidence 567899999999863 233 6899999999999999999999999999999986432 2566788
Q ss_pred Hhhhhhhhh
Q 001227 776 QGIQSESKS 784 (1119)
Q Consensus 776 ~~a~~eik~ 784 (1119)
..+...+.+
T Consensus 65 ~~Al~~v~~ 73 (88)
T 3vlf_B 65 LKAVDKVIS 73 (88)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 777665543
No 144
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=98.13 E-value=4.5e-06 Score=83.65 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=64.4
Q ss_pred CceeeecceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEec
Q 001227 13 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFS 92 (1119)
Q Consensus 13 ~~~~~~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~ 92 (1119)
..+.+....++||++..||+.|.|+.+|..||+|.+. +| . ..|+=.|+.--++|||+.+. .+.|+.||+|.||
T Consensus 59 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~--~~-~-~~l~DlgS~NGT~VNg~~i~---~~~L~~GD~I~iG 131 (143)
T 2kb3_A 59 ARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN--EG-E-FEVVDVGSLNGTYVNREPRN---AQVMQTGDEIQIG 131 (143)
T ss_dssp CEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE--TT-E-EEEEESCCSSCCEETTEECS---EEECCTTEEEEET
T ss_pred eEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE--CC-E-EEEEECCCcCCeEECCEEcc---eEECCCCCEEEEC
Confidence 3456777889999999999999999999999999973 33 3 44555554333899999997 5899999999996
Q ss_pred CCCCcceeeecc
Q 001227 93 PSGKHSYIFQQL 104 (1119)
Q Consensus 93 ~~~~~~yi~~~~ 104 (1119)
. ..+.|+..
T Consensus 132 ~---~~l~f~~~ 140 (143)
T 2kb3_A 132 K---FRLVFLAG 140 (143)
T ss_dssp T---EEEEEEEC
T ss_pred C---EEEEEEeC
Confidence 4 56677643
No 145
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=98.13 E-value=4.4e-06 Score=80.65 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=64.8
Q ss_pred ceeeec-ceeeeecc-cccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEe
Q 001227 14 HLSMTG-AVFTVGHN-RQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVF 91 (1119)
Q Consensus 14 ~~~~~~-~~~tvg~~-~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf 91 (1119)
.+.+.. ..++||+. ..||+.|.|+.+|..||+|..- ++ . ..|+=.|+.--++|||+.+.++..+.|+.||+|.|
T Consensus 26 ~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~--~~-~-~~l~Dl~S~nGT~vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 26 ALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD--SG-N-WVIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp BCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEEC--SS-S-EEEECCCCSSCCEESSSBCCTTCEEECCTTEEEEE
T ss_pred EEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEE--CC-E-EEEEECCCCCCeEECCEECCCCCeEEcCCCCEEEE
Confidence 344554 67999999 8999999999999999999953 22 3 44554544333899999999999999999999999
Q ss_pred cCCCCcceeeecc
Q 001227 92 SPSGKHSYIFQQL 104 (1119)
Q Consensus 92 ~~~~~~~yi~~~~ 104 (1119)
|.. .++|..+
T Consensus 102 G~~---~~~~~~~ 111 (118)
T 1uht_A 102 GEY---TSILVNF 111 (118)
T ss_dssp TTT---EEEEEEE
T ss_pred CCe---EEEEEEE
Confidence 755 4555544
No 146
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=98.12 E-value=3.5e-06 Score=82.56 Aligned_cols=82 Identities=23% Similarity=0.444 Sum_probs=65.6
Q ss_pred ceeeecceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEecC
Q 001227 14 HLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSP 93 (1119)
Q Consensus 14 ~~~~~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~~ 93 (1119)
.+.+....++||++..||+.|.|+.+|..||+|... +| . ..|+=.|+.--++|||+.+.+ .+.|+.||+|.||
T Consensus 27 ~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~--~~-~-~~l~Dl~S~nGt~vNg~~i~~--~~~L~~Gd~i~iG- 99 (128)
T 1r21_A 27 HFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIH--EQ-E-AILHNFSSTNPTQVNGSVIDE--PVRLKHGDVITII- 99 (128)
T ss_dssp EEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SS-C-EEECCCCSSSCCEETTEECSS--CEECCTTEEEECS-
T ss_pred EEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEE--CC-E-EEEEECCCCCCEEECCEECCC--cEEcCCCCEEEEC-
Confidence 466777899999999999999999999999999964 22 2 455556544348999999985 6899999999996
Q ss_pred CCCcceeeecc
Q 001227 94 SGKHSYIFQQL 104 (1119)
Q Consensus 94 ~~~~~yi~~~~ 104 (1119)
.+.+.|...
T Consensus 100 --~~~~~~~~~ 108 (128)
T 1r21_A 100 --DRSFRYENE 108 (128)
T ss_dssp --SCEEEEEEC
T ss_pred --CEEEEEEeC
Confidence 457777754
No 147
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=98.12 E-value=3.7e-06 Score=83.68 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=61.8
Q ss_pred eeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCC--------CceEEeecCCeEEec
Q 001227 21 VFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK--------DSQVVLRGGDELVFS 92 (1119)
Q Consensus 21 ~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~--------~~~~~l~~gde~vf~ 92 (1119)
.++||++..||+.|.|+.+|..||+|..-. ++..+.+-+ .|+.--++|||+.+.+ +..+.|+.||+|.||
T Consensus 33 ~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~-~~~~~~l~D-lgS~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~iG 110 (139)
T 1mzk_A 33 PVKLGRVSPSDLALKDSEVSGKHAQITWNS-TKFKWELVD-MGSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLG 110 (139)
T ss_dssp SEEEESSSSCSEECCCTTSSSEEEEEEEET-TTTEEEEEE-TTCSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECS
T ss_pred eEEeeCCCCCCEEeCCCCCChHHcEEEEEC-CCCEEEEEE-CCCCCCEEECCEECcCcccccccCCceEECCCCCEEEEC
Confidence 699999999999999999999999999653 223444444 4433238999999985 678999999999996
Q ss_pred CCCCcceeeecc
Q 001227 93 PSGKHSYIFQQL 104 (1119)
Q Consensus 93 ~~~~~~yi~~~~ 104 (1119)
.. .++|..+
T Consensus 111 ~~---~~~~~~~ 119 (139)
T 1mzk_A 111 TT---TKVYVRI 119 (139)
T ss_dssp SS---CEEEEEE
T ss_pred CE---EEEEEEc
Confidence 54 5666654
No 148
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=98.12 E-value=3.3e-06 Score=84.64 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=61.7
Q ss_pred eee-ecceeeeecccccceeecCCC----CcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeE
Q 001227 15 LSM-TGAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDEL 89 (1119)
Q Consensus 15 ~~~-~~~~~tvg~~~~~~~~l~d~~----~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~ 89 (1119)
+.+ ....++||++..||+.|.|+. +|..||+|...+ +| .+-+.+. |+.--++|||+.+.++..+.|+.||+|
T Consensus 30 ~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g-~~~l~Dl-~S~NGT~vNg~~i~~~~~~~L~~GD~I 106 (145)
T 2csw_A 30 LLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EG-QWTIMDN-KSLNGVWLNRARLEPLRVYSIHQGDYI 106 (145)
T ss_dssp EECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECT-TS-CEEEEBS-SCSSCEEESSCBCCBTCCEECCSSCCE
T ss_pred EEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcC-CC-eEEEEEC-CCCCCeEECCEECCCCccEECCCCCEE
Confidence 444 456899999999999999999 999999998643 22 3445553 332228999999999999999999999
Q ss_pred EecCC
Q 001227 90 VFSPS 94 (1119)
Q Consensus 90 vf~~~ 94 (1119)
.||.+
T Consensus 107 ~iG~~ 111 (145)
T 2csw_A 107 QLGVP 111 (145)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99985
No 149
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=98.08 E-value=2.5e-06 Score=88.79 Aligned_cols=88 Identities=19% Similarity=0.293 Sum_probs=67.8
Q ss_pred Cceeeecce--eeeecccccceeecCCCCcccceEEeEeec-CC-----------cceeEEEEecCcceEEEcCeecCCC
Q 001227 13 SHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIEN-GG-----------PSGALLEITGGKGEVEVNGNVHPKD 78 (1119)
Q Consensus 13 ~~~~~~~~~--~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~-~~-----------~~~~~le~~~~~~~v~vng~~~~~~ 78 (1119)
+.+.+.... +|||++..||+.|.|+.+|..||.|..... .| ..+-+.+.+-|| ++|||+.+.++
T Consensus 42 ~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStNG--T~VNg~ri~~~ 119 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNV--SYLNNNRMIQG 119 (182)
T ss_dssp SCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSSC--CEETTEECCSS
T ss_pred eEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEECCcCC--eEECCEEcCCC
Confidence 556666555 999999999999999999999999996531 11 345666664455 79999999999
Q ss_pred ceEEeecCCeEEecCC--CCcceeee
Q 001227 79 SQVVLRGGDELVFSPS--GKHSYIFQ 102 (1119)
Q Consensus 79 ~~~~l~~gde~vf~~~--~~~~yi~~ 102 (1119)
..+.|+.||+|.|+.. |...+.|.
T Consensus 120 ~~~~L~~GD~I~l~~d~~G~~~l~f~ 145 (182)
T 1qu5_A 120 TKFLLQDGDEIKIIWDKNNKFVIGFK 145 (182)
T ss_dssp EEEECCTTBCCEEEEEGGGTEEEECC
T ss_pred cceEcCCCCEEEEEEcCCCCEEEEEE
Confidence 9999999999999322 33445554
No 150
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.07 E-value=9.5e-06 Score=78.68 Aligned_cols=81 Identities=23% Similarity=0.358 Sum_probs=63.6
Q ss_pred eeeecceeeeec--ccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEec
Q 001227 15 LSMTGAVFTVGH--NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFS 92 (1119)
Q Consensus 15 ~~~~~~~~tvg~--~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~ 92 (1119)
..+....++||+ +..||+.|.|+.+|..||.|... +|. ..|+=.|+..-++|||+.+.+ .+.|+.||+|.||
T Consensus 31 ~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~dl~S~ngt~vNg~~i~~--~~~L~~GD~I~iG 104 (120)
T 1wln_A 31 YRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DGV--VTVTPRSMDAETYVDGQRISE--TTMLQSGMRLQFG 104 (120)
T ss_dssp EECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--SSC--EEEEESCSSSCEEETSCBCSS--CEEECTTCEEEET
T ss_pred EEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc--CCE--EEEEECCCCCCEEECCEEcCC--CEECCCCCEEEEC
Confidence 455667799996 57999999999999999999853 332 456666654459999999984 6899999999997
Q ss_pred CCCCcceeeec
Q 001227 93 PSGKHSYIFQQ 103 (1119)
Q Consensus 93 ~~~~~~yi~~~ 103 (1119)
.. |.|.|..
T Consensus 105 ~~--~~~~f~~ 113 (120)
T 1wln_A 105 TS--HVFKFVD 113 (120)
T ss_dssp TT--EEEEEEC
T ss_pred Cc--eEEEEEC
Confidence 63 6777764
No 151
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=98.06 E-value=6.3e-06 Score=95.39 Aligned_cols=101 Identities=19% Similarity=0.320 Sum_probs=82.8
Q ss_pred ccccccCCCCceeeecceeeeecccccceeecCCCC---------cccceEEeEee-cCCcc-eeEEEEecCcceEEEcC
Q 001227 4 TYFTVFTGNSHLSMTGAVFTVGHNRQCDLYLKDPSI---------SKNLCRLRRIE-NGGPS-GALLEITGGKGEVEVNG 72 (1119)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~tvg~~~~~~~~l~d~~~---------~~~~c~l~~~~-~~~~~-~~~le~~~~~~~v~vng 72 (1119)
+|.+-....+.+++....++||++..||+.|.|+.+ |..||.|.+.. .++.. +-+-+.+.|| .+|||
T Consensus 12 ~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nG--t~vn~ 89 (419)
T 3i6u_A 12 RLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNG--TFVNT 89 (419)
T ss_dssp EEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSC--EEETT
T ss_pred EeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCC--ceECc
Confidence 455556667899999999999999999999999986 99999997653 22333 4555555566 88999
Q ss_pred eecCCCceEEeecCCeEEecCCCCcceeeecccc
Q 001227 73 NVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSD 106 (1119)
Q Consensus 73 ~~~~~~~~~~l~~gde~vf~~~~~~~yi~~~~~~ 106 (1119)
..+.++....|+.||++.||.+.+..|+|..+..
T Consensus 90 ~~~~~~~~~~l~~~d~i~~~~~~~~~~~~~~~~~ 123 (419)
T 3i6u_A 90 ELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTV 123 (419)
T ss_dssp EECCTTCEEECCTTEEEEESSTTCEEEEEEESCS
T ss_pred ccccCCCcccCCCCCEeeeeccccceEEEecccc
Confidence 9999999999999999999999998898876543
No 152
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=98.06 E-value=7.5e-06 Score=83.35 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=66.6
Q ss_pred ceeee-cceeeeeccc---------------ccceeecCCCCcccceEEeEeecCCcc-eeEEEE-ecCcceEEEcCeec
Q 001227 14 HLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPS-GALLEI-TGGKGEVEVNGNVH 75 (1119)
Q Consensus 14 ~~~~~-~~~~tvg~~~---------------~~~~~l~d~~~~~~~c~l~~~~~~~~~-~~~le~-~~~~~~v~vng~~~ 75 (1119)
.+.+. .+.|+||+.. .||+.|.++.+|..||.|.....+|.. +-+.+. +-|| ++|||+.+
T Consensus 49 ~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNG--T~VNg~ri 126 (158)
T 3els_A 49 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNG--TCLNNVVI 126 (158)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSC--CEETTEEC
T ss_pred EEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCc--cEECCEEc
Confidence 34443 4679999984 599999999999999999865433322 445555 3344 89999999
Q ss_pred CCCceEEeecCCeEEecCCC---Ccceeee
Q 001227 76 PKDSQVVLRGGDELVFSPSG---KHSYIFQ 102 (1119)
Q Consensus 76 ~~~~~~~l~~gde~vf~~~~---~~~yi~~ 102 (1119)
.++..+.|+.||+|.||.+. .+-++|.
T Consensus 127 ~~~~~~~L~~GD~I~~G~s~~~~~~elvF~ 156 (158)
T 3els_A 127 PGARYIELRSGDVLTLSEFEEDNDYELIFM 156 (158)
T ss_dssp CTTCCEECCTTEEEESSSCGGGCCEEEEEE
T ss_pred CCCceEEcCCCCEEEECCCCCCCCEEEEEE
Confidence 99999999999999999875 4555554
No 153
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.06 E-value=2.5e-06 Score=77.19 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=57.0
Q ss_pred hhhcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHH
Q 001227 697 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 775 (1119)
Q Consensus 697 d~~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df 775 (1119)
|..+|.+|+++|++.. ++ ++++++.||..|.||+||||+.+|++|+..|+.+.. ..+...+|
T Consensus 2 d~~~R~~Il~~~l~~~--~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~---------------~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKM--NLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENR---------------YIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTS--CBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC---------------SSBCHHHH
T ss_pred CHHHHHHHHHHHhCCC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---------------CCcCHHHH
Confidence 4678999999998632 33 688999999999999999999999999999987531 23566778
Q ss_pred Hhhhhhhhh
Q 001227 776 QGIQSESKS 784 (1119)
Q Consensus 776 ~~a~~eik~ 784 (1119)
..+...++|
T Consensus 65 ~~Al~~~~p 73 (83)
T 3aji_B 65 EKAYKTVIK 73 (83)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHcc
Confidence 777766665
No 154
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=98.01 E-value=1.5e-05 Score=81.40 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=64.4
Q ss_pred CceeeecceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEec
Q 001227 13 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFS 92 (1119)
Q Consensus 13 ~~~~~~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~ 92 (1119)
..+.+....++||++..||+.|.|+.+|..||+|.+. +| . ..|+=.|+.--++|||+.+. .+.|+.||+|.||
T Consensus 68 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~--~~-~-~~l~DlgS~NGT~VNg~~i~---~~~L~~GD~I~iG 140 (162)
T 2kfu_A 68 SRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE--NN-E-FNVVDVGSLNGTYVNREPVD---SAVLANGDEVQIG 140 (162)
T ss_dssp CEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE--TT-E-EEEECCCCSSCEEETTBCCS---EEECCSSCEEEET
T ss_pred eEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE--CC-E-EEEEECCCCCCeEECCEEcc---eEECCCCCEEEEC
Confidence 3456677889999999999999999999999999973 33 3 34555554433899999997 5899999999996
Q ss_pred CCCCcceeeecc
Q 001227 93 PSGKHSYIFQQL 104 (1119)
Q Consensus 93 ~~~~~~yi~~~~ 104 (1119)
. +.+.|+..
T Consensus 141 ~---~~l~f~~~ 149 (162)
T 2kfu_A 141 K---FRLVFLTG 149 (162)
T ss_dssp T---EEEEEECS
T ss_pred C---EEEEEEeC
Confidence 5 56677643
No 155
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=98.01 E-value=1e-05 Score=80.02 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=66.4
Q ss_pred CceeeecceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCee--cCCCceEEeecCCeEE
Q 001227 13 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNV--HPKDSQVVLRGGDELV 90 (1119)
Q Consensus 13 ~~~~~~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~--~~~~~~~~l~~gde~v 90 (1119)
..+++....+|||++..||+.|.|+.+|..+|+|....+++ .+.+.+. |+.--++|||+. +.++..+.|+.||+|.
T Consensus 38 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~-~~~l~Dl-~S~NGT~vNg~~i~l~~~~~~~L~~GD~I~ 115 (132)
T 3va4_A 38 RDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNK-APILQDC-GSLNGTQIVKPPRVLPPGVSHRLRDQELIL 115 (132)
T ss_dssp EEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTS-CCEEEEC-SCSSCEEETTTTEEECTTCCEECCTTCEEE
T ss_pred eEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCC-EEEEEEC-CCCCCeEECCEEcccCCCCEEECCCCCEEE
Confidence 34677778899999999999999999999999998654343 3455554 332229999998 6778899999999999
Q ss_pred ecCCCCcceeeec
Q 001227 91 FSPSGKHSYIFQQ 103 (1119)
Q Consensus 91 f~~~~~~~yi~~~ 103 (1119)
||.. .+.|..
T Consensus 116 lG~~---~l~f~~ 125 (132)
T 3va4_A 116 FADF---PCQYHR 125 (132)
T ss_dssp ETTE---EEEEEE
T ss_pred ECCE---EEEEEE
Confidence 9654 455553
No 156
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=97.99 E-value=5e-06 Score=82.78 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=65.0
Q ss_pred eeeec-ceeeeecccc-cceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEec
Q 001227 15 LSMTG-AVFTVGHNRQ-CDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFS 92 (1119)
Q Consensus 15 ~~~~~-~~~tvg~~~~-~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~ 92 (1119)
+.+.. ..++||++.. ||+.|.|+.+|..||+|..-... ..+-+.+. |+.-=++|||+.+.++..+.|+.||+|.||
T Consensus 49 ~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~-~~~~l~Dl-~S~NGT~vNg~~l~~~~~~~L~~gd~i~~G 126 (140)
T 2jpe_A 49 LIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHL-KRVFLIDL-NSTHGTFLGHIRLEPHKPQQIPIDSTVSFG 126 (140)
T ss_dssp ECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSS-CCEEEECC-SCSSCEESSSCEECSSSCCEECTTCCBBCS
T ss_pred EEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCC-CcEEEEEC-CCCCCeEECCEECCCCccEECCCCCEEEEC
Confidence 45555 3599999998 99999999999999999865322 23344444 333228999999999889999999999998
Q ss_pred CCCCcceeee
Q 001227 93 PSGKHSYIFQ 102 (1119)
Q Consensus 93 ~~~~~~yi~~ 102 (1119)
..-. .|+++
T Consensus 127 ~~~~-~f~~~ 135 (140)
T 2jpe_A 127 ASTR-AYTLR 135 (140)
T ss_dssp SCCC-CBCCB
T ss_pred CceE-EEEEe
Confidence 8654 35554
No 157
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.95 E-value=2.5e-05 Score=85.97 Aligned_cols=125 Identities=11% Similarity=0.044 Sum_probs=76.6
Q ss_pred CCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCcchhhhhcccCC
Q 001227 572 SPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 645 (1119)
Q Consensus 572 ~p~Ilf~~die~~l~------~~~~~~~~l~~~L~~L~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~p 645 (1119)
.+-||||||+|.+.. ...+..+.|...|+.-..+++||++++..+. +.++
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~-------------------~~~~----- 185 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM-------------------ENFF----- 185 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH-------------------HHHH-----
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH-------------------HHHH-----
Confidence 356999999999543 2567777888888888889999999882100 0000
Q ss_pred CCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHHhhhhhhhhcccchhHHHHHhhhCCCCcccchhhh
Q 001227 646 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLC 725 (1119)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~e~~Lpd~~gR~~Il~IhT~l~~~~l~~~~L~~LA 725 (1119)
.....|..+|+..|.+++|+++.+...|...+..-- ..++...++.++
T Consensus 186 --------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~------------------~~~~~~~~~~l~ 233 (309)
T 3syl_A 186 --------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN------------------YQMTPEAETALR 233 (309)
T ss_dssp --------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTT------------------CEECHHHHHHHH
T ss_pred --------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcC------------------CCCCHHHHHHHH
Confidence 111346667888899999998888765554433200 011222222232
Q ss_pred cc------cCCCC-HHHHHHHHhhhhhhhhhhcC
Q 001227 726 IK------DQTLT-TEGVEKIVGWALSHHFMHCS 752 (1119)
Q Consensus 726 ~~------tkg~s-gadI~~Lv~~A~s~al~r~~ 752 (1119)
.. +..++ +.++..++..|...+..+..
T Consensus 234 ~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 234 AYIGLRRNQPHFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 22 23333 77888888888877666543
No 158
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.95 E-value=1e-05 Score=85.78 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFI 881 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi 881 (1119)
+++||+||||||||++|.++|+.+...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 57999999999999999999999865543
No 159
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=97.94 E-value=3.2e-05 Score=75.64 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=57.3
Q ss_pred eeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEecCCCCccee
Q 001227 21 VFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYI 100 (1119)
Q Consensus 21 ~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~~~~~~~yi 100 (1119)
..+||+...||+.|.|+.+|..+|.|...+ +| . ..|+-.++. -++|||+.+.+ .+.|+.||.|.||.. |-|.
T Consensus 49 ~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~-~g-~-~~l~dl~~n-gt~VNG~~V~~--~~~L~~GD~I~lG~~--~~Fr 120 (124)
T 3fm8_A 49 HTLIGSANSQDIQLCGMGILPEHCIIDITS-EG-Q-VMLTPQKNT-RTFVNGSSVSS--PIQLHHGDRILWGNN--HFFR 120 (124)
T ss_dssp EEEEESSTTCSEECCSTTCCSSCEEEEECT-TS-C-EEEEECTTC-CEEETTEECCS--CEEECTTCEEEETTT--EEEE
T ss_pred CeEECCCCCCCEEECCCCeecceEEEEECC-CC-e-EEEEECCCC-CEEECCEEcCC--cEECCCCCEEEECCC--eEEE
Confidence 579999999999999999999999998543 23 2 345555544 49999999985 689999999999754 4444
Q ss_pred e
Q 001227 101 F 101 (1119)
Q Consensus 101 ~ 101 (1119)
|
T Consensus 121 F 121 (124)
T 3fm8_A 121 L 121 (124)
T ss_dssp E
T ss_pred E
Confidence 4
No 160
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.92 E-value=4.9e-06 Score=97.64 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=54.0
Q ss_pred hhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccCCCC
Q 001227 330 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 400 (1119)
Q Consensus 330 e~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~~~g 400 (1119)
++.|..|..|.+-|+++..+....+ .....+.|||.||+|| -..+||||||+.++++++.+|.+.+..
T Consensus 21 e~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppGt--GKT~lar~lA~~l~~~~~~v~~~~~~~ 88 (444)
T 1g41_A 21 ADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGV--GKTEIARRLAKLANAPFIKVEATKFTE 88 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTTS--SHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred HHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCCC--CHHHHHHHHHHHcCCCceeecchhhcc
Confidence 8899999999998888766532211 1123467999999999 799999999999999999999877654
No 161
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=97.88 E-value=3.7e-05 Score=80.16 Aligned_cols=82 Identities=26% Similarity=0.444 Sum_probs=62.1
Q ss_pred ecceeeeecc---cccceeecCCCCcccceEEeEeecCCcc-eeEEEEecCcceEEEcCeecCCCceEEeecCCeEEecC
Q 001227 18 TGAVFTVGHN---RQCDLYLKDPSISKNLCRLRRIENGGPS-GALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSP 93 (1119)
Q Consensus 18 ~~~~~tvg~~---~~~~~~l~d~~~~~~~c~l~~~~~~~~~-~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~~ 93 (1119)
....-+||+. ..||+.|.++.|+..||.|..-..++.. +..|+-. ++..|+|||+.+.. .+.|+.||.|+||.
T Consensus 89 ~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~-~~a~t~VNG~~I~~--~~~L~~GDrI~lG~ 165 (184)
T 4egx_A 89 KDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPC-EGADTYVNGKKVTE--PSILRSGNRIIMGK 165 (184)
T ss_dssp CSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEEC-TTCCEEETTEECCS--CEECCTTCEEEETT
T ss_pred CCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeC-CCCeEEEcCEEccc--cEEcCCCCEEEECC
Confidence 3456799985 4699999999999999999866555432 3344433 34469999999975 68899999999985
Q ss_pred CCCcceeeecc
Q 001227 94 SGKHSYIFQQL 104 (1119)
Q Consensus 94 ~~~~~yi~~~~ 104 (1119)
+ |-|.|-.+
T Consensus 166 ~--h~Frfn~P 174 (184)
T 4egx_A 166 S--HVFRFNHP 174 (184)
T ss_dssp T--EEEEEECH
T ss_pred C--CEEEECCh
Confidence 3 77888643
No 162
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=97.88 E-value=2.5e-05 Score=73.98 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=60.2
Q ss_pred eeeec-ceeeeeccc-ccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEec
Q 001227 15 LSMTG-AVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFS 92 (1119)
Q Consensus 15 ~~~~~-~~~tvg~~~-~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~ 92 (1119)
+.+.. ..++||++. .||+.|.|+.+|..||+|.....+ .+-+.+ .|+..-++|||+.+.+ .+.|+.||+|.||
T Consensus 19 ~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~--~~~l~D-l~S~nGt~vng~~i~~--~~~L~~Gd~i~~G 93 (106)
T 3gqs_A 19 FHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDN--SVLIED-LGSKNGVIVEGRKIEH--QSTLSANQVVALG 93 (106)
T ss_dssp EEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTS--CEEEEE-CSCSSCCEETTEECSS--EEECCTTCCEEET
T ss_pred EEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCC--cEEEEE-CcCCCCeEECCEECCC--CeECCCCCEEEEC
Confidence 45554 469999998 799999999999999999864223 234444 4443338999999988 6799999999996
Q ss_pred CCCCcceeee
Q 001227 93 PSGKHSYIFQ 102 (1119)
Q Consensus 93 ~~~~~~yi~~ 102 (1119)
.. .+.|.
T Consensus 94 ~~---~~~~~ 100 (106)
T 3gqs_A 94 TT---LFLLV 100 (106)
T ss_dssp TE---EEEEE
T ss_pred CE---EEEEE
Confidence 53 44444
No 163
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.87 E-value=1.5e-05 Score=89.84 Aligned_cols=141 Identities=11% Similarity=0.071 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhccCC--CCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccC
Q 001227 556 LAINELFEVALNESKS--SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFG 633 (1119)
Q Consensus 556 ~~~~~l~ev~~~esk~--~p~Ilf~~die~~l~~~~~~~~~l~~~L~~L~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~~ 633 (1119)
-.++..........+. .|.||||||++. +. .+..+.|...++....+++++++..... ++....
T Consensus 171 ~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~-l~--~~~~~~L~~~le~~~~~~~ii~t~~~~~-----------~i~~t~ 236 (368)
T 3uk6_A 171 EQINAKVAEWREEGKAEIIPGVLFIDEVHM-LD--IESFSFLNRALESDMAPVLIMATNRGIT-----------RIRGTS 236 (368)
T ss_dssp HHHHHHHHHHHHHTC---CBCEEEEESGGG-SB--HHHHHHHHHHTTCTTCCEEEEEESCSEE-----------ECBTSS
T ss_pred HHHHHHHHHhhhhccccccCceEEEhhccc-cC--hHHHHHHHHHhhCcCCCeeeeeccccee-----------eeeccC
Confidence 3444444444433332 388999999998 43 4666777788888778888887764100 000000
Q ss_pred cchhhhhcccCCCCccccccccccchHHHHHhhhhCCCeEEEeCCChhhHHHHHHHHHhhhhhhhhcccchhHHHHHhhh
Q 001227 634 SNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSR 713 (1119)
Q Consensus 634 ~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe~q~e~~Lpd~~gR~~Il~IhT~l~~ 713 (1119)
...|+.++ ..|..+|.. |.+++|+++.+...+...+.. ..
T Consensus 237 --------~~~~~~l~-------------~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~------------------~~ 276 (368)
T 3uk6_A 237 --------YQSPHGIP-------------IDLLDRLLI-VSTTPYSEKDTKQILRIRCEE------------------ED 276 (368)
T ss_dssp --------CEEETTCC-------------HHHHTTEEE-EEECCCCHHHHHHHHHHHHHH------------------TT
T ss_pred --------CCCcccCC-------------HHHHhhccE-EEecCCCHHHHHHHHHHHHHH------------------cC
Confidence 00122232 345555644 788888877776555433221 12
Q ss_pred CCCCcccchhhhcccCCCCHHHHHHHHhhhhhhhhhh
Q 001227 714 NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 750 (1119)
Q Consensus 714 ~~l~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r 750 (1119)
..+++..++.|+..+.+.+..++..+|..|...|..+
T Consensus 277 ~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 277 VEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp CCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 2346666777888877678889999999998888653
No 164
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=97.86 E-value=2.5e-05 Score=79.36 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=58.7
Q ss_pred ceeeecceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEecC
Q 001227 14 HLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSP 93 (1119)
Q Consensus 14 ~~~~~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~~ 93 (1119)
.+.+....++||++..||+.|.|+.||..+|+|... ++ . ..|+=.|+.--++|||+.+. .+.|+.||+|.||.
T Consensus 79 ~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~--~~-~-~~l~DlgStNGT~VNG~~i~---~~~L~~GD~I~lG~ 151 (157)
T 3oun_A 79 TYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQ-V-ALLADLNSTNGTTVNNAPVQ---EWQLADGDVIRLGH 151 (157)
T ss_dssp EEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEEC--SS-C-EEEEECSCSSCCEETTEECS---EEECCTTCEEEETT
T ss_pred EEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEE--CC-E-EEEEECCCCCCeEECCEECc---eEECCCCCEEEECC
Confidence 456777789999999999999999999999999863 22 2 44555544333899999996 58999999999975
No 165
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=97.85 E-value=3e-05 Score=81.82 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=63.7
Q ss_pred ceee-ecceeeeeccc---------------ccceeecCCCCcccceEEeEeecCCc-ceeEEEE-ecCcceEEEcCeec
Q 001227 14 HLSM-TGAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGP-SGALLEI-TGGKGEVEVNGNVH 75 (1119)
Q Consensus 14 ~~~~-~~~~~tvg~~~---------------~~~~~l~d~~~~~~~c~l~~~~~~~~-~~~~le~-~~~~~~v~vng~~~ 75 (1119)
.+.+ ..+.|+||++. .||+.|.|+++|..||.|..-..+|. .+-+.+. +-|| ++|||+.+
T Consensus 96 ~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNG--TfVNG~rI 173 (205)
T 3elv_A 96 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNG--TCLNNVVI 173 (205)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSC--CEETTEEC
T ss_pred EEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCC--CeECCEEC
Confidence 4566 35899999984 49999999999999999986544433 2344554 3344 89999999
Q ss_pred CCCceEEeecCCeEEecCCC
Q 001227 76 PKDSQVVLRGGDELVFSPSG 95 (1119)
Q Consensus 76 ~~~~~~~l~~gde~vf~~~~ 95 (1119)
.+...+.|+.||+|.||.+.
T Consensus 174 ~~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 174 PGARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp CBTSCEECCTTCEEESSSSG
T ss_pred CCCceeECCCCCEEEECCCC
Confidence 99989999999999999875
No 166
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.83 E-value=3.5e-05 Score=107.52 Aligned_cols=140 Identities=21% Similarity=0.356 Sum_probs=88.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCccccccccchHHHHHHHHHHH----Hh------------cCCeEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFGEGEKYVKAVFSLA----SK------------IAPSVV 915 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-g~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A----~k------------~~PsIL 915 (1119)
++|||+||||||||+++...+..+ +.+++.++++.-.+ ...+...++.. .+ .+..||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 469999999999998876654444 67788888866332 23344444321 00 112499
Q ss_pred EEccccccccCCCCCchhHHHHHHHHhhhhh---cc--CCcccCCccEEEEEecCCC-----CCCcHHHHhccccccccC
Q 001227 916 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVN---WD--GLRTKDKERVLVLAATNRP-----FDLDEAVVRRLPRRLMVN 985 (1119)
Q Consensus 916 fIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~---ld--gl~~k~~~~VlVIaTTN~p-----~~Ld~aLlrRF~~~I~v~ 985 (1119)
||||++.- .....+.+.. ..++.+++.. .+ ...-..-.++.+|||+|++ ..++++++||| ..+.++
T Consensus 1379 FiDDiNmp--~~D~yGtQ~~-ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i~ 1454 (3245)
T 3vkg_A 1379 FCDEINLP--STDKYGTQRV-ITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLVD 1454 (3245)
T ss_dssp EETTTTCC--CCCTTSCCHH-HHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEECC
T ss_pred EecccCCC--CccccccccH-HHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEeC
Confidence 99999842 2222222222 2233333322 11 1101112568899999987 46999999999 569999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 001227 986 LPDAPNREKIIRVILAK 1002 (1119)
Q Consensus 986 lPd~eeR~eILk~ll~k 1002 (1119)
.|+.++...|+..++..
T Consensus 1455 ~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1455 FPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998877654
No 167
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.78 E-value=9.2e-05 Score=103.39 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=90.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCch
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 932 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 932 (1119)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-+. ...+..+|.-+.+. .+..++|||+++ ....
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl-----~~~v 672 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL-----EERI 672 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----CHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC-----CHHH
Confidence 36789999999999999999999999999999987432 23566677776654 378999999987 2222
Q ss_pred hHHHHHHHHhhhhh---------cc-CCcccCCccEEEEEecCC----CCCCcHHHHhccccccccCCCCHHHHHHHH
Q 001227 933 HEAMRKMKNEFMVN---------WD-GLRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKII 996 (1119)
Q Consensus 933 ~~~l~~ll~~Ll~~---------ld-gl~~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~v~lPd~eeR~eIL 996 (1119)
.......+..+... +. |-.-.-+..+.|++|.|+ ...|++.+..|| +.+.+..||.+...+|+
T Consensus 673 LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 673 LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHH
Confidence 22211111111111 11 211122356788888884 468999999999 67999999998887775
No 168
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.73 E-value=4.9e-05 Score=102.37 Aligned_cols=78 Identities=24% Similarity=0.294 Sum_probs=60.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc----ccc------------ccchHHHHHHHHHHHHh
Q 001227 849 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SKW------------FGEGEKYVKAVFSLASK 909 (1119)
Q Consensus 849 ~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~----s~~------------~G~~e~~I~~lF~~A~k 909 (1119)
..+..+++|+||||||||+||.+++.+. |..+..++..... ... ....++.++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 3456789999999999999999998775 6677777766432 111 22456778888888898
Q ss_pred cCCeEEEEccccccccC
Q 001227 910 IAPSVVFVDEVDSMLGR 926 (1119)
Q Consensus 910 ~~PsILfIDEID~L~~~ 926 (1119)
.+|++||||+++.+++.
T Consensus 1504 ~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp TCCSEEEESCGGGCCCH
T ss_pred CCCCEEEEcChhHhccc
Confidence 99999999999988753
No 169
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=97.73 E-value=7.3e-05 Score=69.82 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=54.2
Q ss_pred ecceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCe
Q 001227 18 TGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 88 (1119)
Q Consensus 18 ~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde 88 (1119)
....|++|+...|+|.|.|+++|..|+.|.+..+| -++. ....|.|+|||+.+ ..+.|.-||-
T Consensus 19 ~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G----~~~l-~S~nGtVFVNGqrv---~~~~I~~gDt 81 (102)
T 3uv0_A 19 ADTIYRIGRQKGLEISIADESMELAHATACILRRG----VVRL-AALVGKIFVNDQEE---TVVDIGMENA 81 (102)
T ss_dssp TTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT----EEEE-EESSSCEEETTEEE---SEEEECGGGC
T ss_pred cCcEEEEcCCCCCcEEECCcccccceEEEEecCCc----eEEE-EeccCcEEECCEEe---eeEEccCCcc
Confidence 35789999999999999999999999999988766 3332 26667999999999 5899999999
No 170
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.72 E-value=4.6e-05 Score=83.75 Aligned_cols=27 Identities=44% Similarity=0.592 Sum_probs=24.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGA 878 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~ 878 (1119)
.++++|+||||||||++|.+||+..+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 357999999999999999999998654
No 171
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.69 E-value=0.00014 Score=78.87 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=30.8
Q ss_pred CCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001227 358 TMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 395 (1119)
Q Consensus 358 ~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 395 (1119)
...+.|||.||+|| ...+||+|+|+..+.+++.++.
T Consensus 62 ~~~~~vLl~G~~Gt--GKT~la~~ia~~~~~~~~~i~~ 97 (272)
T 1d2n_A 62 TPLVSVLLEGPPHS--GKTALAAKIAEESNFPFIKICS 97 (272)
T ss_dssp CSEEEEEEECSTTS--SHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCeEEEEECCCCC--cHHHHHHHHHHHhCCCEEEEeC
Confidence 34568999999999 7999999999999888777764
No 172
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.66 E-value=2.5e-05 Score=70.60 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=42.4
Q ss_pred hcccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhhhhhcCCCCCCCCcccccccchhhhHHHHHh
Q 001227 699 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 777 (1119)
Q Consensus 699 ~gR~~Il~IhT~l~~~~l-~~~~L~~LA~~tkg~sgadI~~Lv~~A~s~al~r~~~~i~~~~kl~id~~si~~~~~df~~ 777 (1119)
++|.+|+++|+... ++ ++++++.||..|.||+||||+.+|++|+..|+.+.. ..+...||..
T Consensus 1 ~~R~~Il~~~l~~~--~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~---------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKM--SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR---------------YVILQSDLEE 63 (82)
T ss_dssp -------------C--EECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC---------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCC--CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---------------CCcCHHHHHH
Confidence 47899999998622 23 678999999999999999999999999999998531 1355677776
Q ss_pred hhhhh
Q 001227 778 IQSES 782 (1119)
Q Consensus 778 a~~ei 782 (1119)
+...+
T Consensus 64 Al~~v 68 (82)
T 2dzn_B 64 AYATQ 68 (82)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66554
No 173
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.63 E-value=3.6e-05 Score=92.68 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=30.6
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001227 359 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 395 (1119)
Q Consensus 359 ~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 395 (1119)
..+-+||.||+|| ...+|||+||+.++.++.-++.
T Consensus 107 ~g~~vll~Gp~Gt--GKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 107 KGPILCLAGPPGV--GKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp CSCEEEEESSSSS--SHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHHhcCCCeEEEEe
Confidence 4667999999999 7999999999999988777764
No 174
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.60 E-value=0.00013 Score=84.05 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=63.7
Q ss_pred CceeeecceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeEEec
Q 001227 13 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFS 92 (1119)
Q Consensus 13 ~~~~~~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~vf~ 92 (1119)
..+++....+|||++..||+.|.|+.+|..||+|... +| .+ .|+=.|+..-++|||+.+. ..+.|+.||+|.||
T Consensus 299 ~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~--~~-~~-~l~Dl~S~nGt~vng~~i~--~~~~L~~gd~i~~G 372 (388)
T 2ff4_A 299 RGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDT--GT-NY-VINDLRSSNGVHVQHERIR--SAVTLNDGDHIRIC 372 (388)
T ss_dssp CEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SS-CE-EEEECSCSSCCEETTEECS--SEEEECTTCEEEET
T ss_pred cEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEE--CC-EE-EEEECCCCCCeEECCEECC--CceECCCCCEEEEC
Confidence 3455667899999999999999999999999999863 33 33 4444443333899999995 47999999999997
Q ss_pred CCCCcceeeec
Q 001227 93 PSGKHSYIFQQ 103 (1119)
Q Consensus 93 ~~~~~~yi~~~ 103 (1119)
. +.+.|+.
T Consensus 373 ~---~~~~~~~ 380 (388)
T 2ff4_A 373 D---HEFTFQI 380 (388)
T ss_dssp T---EEEEEEC
T ss_pred C---EEEEEEe
Confidence 5 5677764
No 175
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.53 E-value=0.00095 Score=74.94 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=94.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CC-cEEEEecCccccccccchHHHHHHHHHHHHh----cCCeEEEEccccc-
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GA-NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDS- 922 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~-~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~- 922 (1119)
.+.+||+||+|.||+..++++++.+ ++ ++..+... + +..++.+++.+.. ....|++|||++.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~------~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---P------NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---T------TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---C------CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 3579999999999999999998865 33 22222111 1 1223445544432 2357999999987
Q ss_pred cccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-----CCCCcHHHHhccccccccCCCCHHHHHHHHH
Q 001227 923 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 997 (1119)
Q Consensus 923 L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~-----p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk 997 (1119)
+. .. ..+.|+..++..+ ...++|+++++. ...+.+++.+|+ .++.+..++..+...+++
T Consensus 89 l~-----~~-------~~~aLl~~le~p~---~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 89 PN-----AA-------INEQLLTLTGLLH---DDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CC-----TT-------HHHHHHHHHTTCB---TTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHH
T ss_pred CC-----hH-------HHHHHHHHHhcCC---CCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHH
Confidence 61 11 2223333343321 233444454432 235667888887 578899999999999999
Q ss_pred HHHhhcccC-ChhcHHHHHHHcCCCcHHHHHHHHH
Q 001227 998 VILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1031 (1119)
Q Consensus 998 ~ll~k~~l~-~d~dl~~LA~~TeGysg~DL~~L~~ 1031 (1119)
..+...++. ++..++.|+..+.|- .+++.+.++
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~gd-l~~~~~ele 186 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYEGN-LLALAQALE 186 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSSTTC-HHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhchH-HHHHHHHHH
Confidence 988876644 445566777776653 334444333
No 176
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=97.50 E-value=0.00028 Score=66.66 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=71.1
Q ss_pred ccccccCCCCceee-ecceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEE
Q 001227 4 TYFTVFTGNSHLSM-TGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVV 82 (1119)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~ 82 (1119)
.|.+|...+|.+.+ .+..++||++..|. +.|.-.|-.+|+|+--..+| .|.+- -.|.++ ..|||+.+.|+..+.
T Consensus 6 ~L~~~~~~~~~I~L~~g~~v~iGR~p~t~--I~DkrcSR~h~~L~~~~~~g-~v~vk-~lg~Np-~~vng~~l~k~~~~~ 80 (102)
T 3kt9_A 6 WLVRQDSRHQRIRLPHLEAVVIGRGPETK--ITDKKCSRQQVQLKAECNKG-YVKVK-QVGVNP-TSIDSVVIGKDQEVK 80 (102)
T ss_dssp EEEETTSTTCEEECCBTCEEEECSSTTTC--CCCTTSCSSCEEEEEETTTT-EEEEE-ECSSSC-CEETTEECCBTCEEE
T ss_pred EEEecCCCCCcEEcCCCCcEEeccCCccc--cccCcccCcceEEEEecCCC-EEEEE-ECcCCC-CeECCEEcCCCCeEE
Confidence 36677777777776 56678999999885 47999999999999554343 44444 455553 578999999999999
Q ss_pred eecCCeEEecCCCCcceeee
Q 001227 83 LRGGDELVFSPSGKHSYIFQ 102 (1119)
Q Consensus 83 l~~gde~vf~~~~~~~yi~~ 102 (1119)
|+.||.+-. .+|+|.|-++
T Consensus 81 L~~GD~l~L-l~~~~~~~v~ 99 (102)
T 3kt9_A 81 LQPGQVLHM-VNELYPYIVE 99 (102)
T ss_dssp ECTTCCEEE-ETTEEEEEEE
T ss_pred eCCCCEEEE-ccCCceEEEE
Confidence 999998644 6788877554
No 177
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=97.50 E-value=0.00023 Score=68.01 Aligned_cols=93 Identities=14% Similarity=0.093 Sum_probs=74.7
Q ss_pred ccccccCCCCceeee--cceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceE
Q 001227 4 TYFTVFTGNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQV 81 (1119)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~ 81 (1119)
.|.++...+|.+.|. ...++||++. ...+.|.-.|-.+|+|+ +.-.+..|.+- -.|.++ ..|||+.+.|+..+
T Consensus 11 ~L~~~~~~~~~I~Lp~~~g~~viGR~p--~t~I~DkrcSR~hv~L~-ad~~~~~v~vk-~lG~Np-~~vng~~l~k~~~~ 85 (110)
T 2brf_A 11 WLESPPGEAPPIFLPSDGQALVLGRGP--LTQVTDRKCSRTQVELV-ADPETRTVAVK-QLGVNP-STTGTQELKPGLEG 85 (110)
T ss_dssp EEECSTTSSCCEECCSTTCCEEECSBT--TTTBCCTTSCSSCEEEE-EETTTTEEEEE-ECSSSC-CEEC-CBCCTTCEE
T ss_pred EEEeCCCCCCcEEeccCCCCEEEcCCC--CcccccccceeeeEEEE-EecCCCEEEEE-EcccCC-cEECCEEcCCCCEE
Confidence 578999999999994 6889999988 45589999999999998 55455554444 556663 68999999999999
Q ss_pred EeecCCeEEecCCCCcceeee
Q 001227 82 VLRGGDELVFSPSGKHSYIFQ 102 (1119)
Q Consensus 82 ~l~~gde~vf~~~~~~~yi~~ 102 (1119)
.|+.||.+-. .+|+|.|-++
T Consensus 86 ~L~~GD~leL-l~g~y~~~v~ 105 (110)
T 2brf_A 86 SLGVGDTLYL-VNGLHPLTLR 105 (110)
T ss_dssp EEETTCEEEE-ETTEEEEEEE
T ss_pred EecCCCEEEE-ccCCeEEEEE
Confidence 9999998744 6899888665
No 178
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.48 E-value=0.00056 Score=70.46 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=24.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFI 881 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi 881 (1119)
.+.|.||+|+|||||++.|+..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 5789999999999999999988865443
No 179
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=97.30 E-value=0.00073 Score=66.97 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=75.9
Q ss_pred ccccccCCCCceeee--cceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceE
Q 001227 4 TYFTVFTGNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQV 81 (1119)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~ 81 (1119)
.|+++...+|.+.|. ...++||++. ...+.|.-.|-.+|+|+ +.-.+..|.+- ..|.+ ...|||+.+.|+..+
T Consensus 11 ~L~p~d~~~~~I~Lp~~~g~vvIGRgP--et~ItDkRcSR~qv~L~-ad~~~g~V~Vk-~lG~N-P~~vng~~L~k~~~~ 85 (143)
T 1yj5_C 11 WLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELI-ADPESRTVAVK-QLGVN-PSTVGVHELKPGLSG 85 (143)
T ss_dssp EEECCTTSCCCEECCTTTCEEEECSBT--TTTBCCSSSCSSCEEEE-EETTTTEEEEE-ECSSS-CCEETTEECCTTCEE
T ss_pred EEEecCCCCCcEEeccCCCCEEEcCCC--ccccccccccceeEEEE-EecCCCeEEEE-EcccC-CcEECCEEecCCCEE
Confidence 578899999999995 7899999988 55689999999999998 54444554444 44555 378999999999999
Q ss_pred EeecCCeEEecCCCCcceeeec
Q 001227 82 VLRGGDELVFSPSGKHSYIFQQ 103 (1119)
Q Consensus 82 ~l~~gde~vf~~~~~~~yi~~~ 103 (1119)
.|+.||.+- =.+|+|.|-+.-
T Consensus 86 ~L~~GD~Le-Ll~g~y~f~V~f 106 (143)
T 1yj5_C 86 SLSLGDVLY-LVNGLYPLTLRW 106 (143)
T ss_dssp EECTTCEEE-SSSSCSEEEEEE
T ss_pred EecCCCEEE-EecCCceEEEEe
Confidence 999999874 478999987763
No 180
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=97.21 E-value=0.00044 Score=66.87 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=75.3
Q ss_pred ccccccCCCCceeee--cceeeeecccccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceE
Q 001227 4 TYFTVFTGNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQV 81 (1119)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~ 81 (1119)
+|.++...+|.+.|. ...++||++. ...+.|.-.|-.+|+|+ +.-....|.+- ..|.+ ...|||+.+.|+..+
T Consensus 18 ~L~~~~~~~~~I~Lp~~~g~~viGRgp--~t~I~DkrcSR~qv~L~-ad~~~~~v~vk-~lG~N-P~~vng~~l~k~~~~ 92 (119)
T 1ujx_A 18 WLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELI-ADPESRTVAVK-QLGVN-PSTVGVQELKPGLSG 92 (119)
T ss_dssp EEECCSSSCCCCCCCTTSCCEEESBBT--TTTBCCTTSCTTSEEEE-EETTTTEEEEE-ECSSS-CCBSSSSBCCTTCEE
T ss_pred EEEeCCCCCCcEEeccCCCCEEEcCCC--CcccccccccceeEEEE-EecCCCEEEEE-EcccC-CcEECCEEecCCCEE
Confidence 477899999999995 7899999988 55689999999999998 54444554444 45555 378999999999999
Q ss_pred EeecCCeEEecCCCCcceeee
Q 001227 82 VLRGGDELVFSPSGKHSYIFQ 102 (1119)
Q Consensus 82 ~l~~gde~vf~~~~~~~yi~~ 102 (1119)
.|+.||.+-. .+|+|.|-++
T Consensus 93 ~L~~GD~l~L-l~g~y~~~v~ 112 (119)
T 1ujx_A 93 SLSLGDVLYL-VNGLYPLTLR 112 (119)
T ss_dssp EEETTCCCBC-BTTBSCCEEE
T ss_pred EecCCCEEEE-ecCCeEEEEE
Confidence 9999998743 7899998776
No 181
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.14 E-value=0.00097 Score=72.78 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=48.9
Q ss_pred hhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccCCC
Q 001227 329 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 399 (1119)
Q Consensus 329 se~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~~~ 399 (1119)
.++.+..|..+...|++...+..-.+ -....+.|||.||+|| ...+|||++|+.++.+++.+|.+.+.
T Consensus 20 ~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~Gt--GKT~la~~la~~l~~~~~~i~~~~~~ 87 (310)
T 1ofh_A 20 QADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGV--GKTEIARRLAKLANAPFIKVEATKFT 87 (310)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTTS--SHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred hHHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCCC--CHHHHHHHHHHHhCCCEEEEcchhcc
Confidence 36777777777776655544431111 0123468999999999 79999999999999999888876554
No 182
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.12 E-value=0.0034 Score=65.16 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--------------c---------------------
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--------------W--------------------- 892 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~--------------~--------------------- 892 (1119)
+..-++|.||+|+|||+|++.++... +.+++.++....... .
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSL 101 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTTBC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCceeee
Confidence 33568999999999999999998554 556666654321000 0
Q ss_pred -ccchHHHHHHHHHHHHhcCCe--EEEEccccccc
Q 001227 893 -FGEGEKYVKAVFSLASKIAPS--VVFVDEVDSML 924 (1119)
Q Consensus 893 -~G~~e~~I~~lF~~A~k~~Ps--ILfIDEID~L~ 924 (1119)
..........+...+....|. +|+|||+..++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 102 VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 001233334445555566888 99999999875
No 183
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.12 E-value=0.00022 Score=82.15 Aligned_cols=112 Identities=21% Similarity=0.218 Sum_probs=63.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHHhcCCeEEEEcccccccc-CCCC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG-RREN 929 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~-~r~s 929 (1119)
+...++|+||||+|||+|+++++...+..++.+..+.- . . -|....-.+..++++||++.+.. .+.-
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~-------~---~--~~~lg~~~q~~~~l~dd~~~~~~~~r~l 235 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD-------R---L--NFELGVAIDQFLVVFEDVKGTGGESRDL 235 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT-------T---H--HHHHGGGTTCSCEEETTCCCSTTTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch-------h---H--HHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 44679999999999999999999988776655433220 0 0 01111222346789999998764 2211
Q ss_pred CchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--cccccccc
Q 001227 930 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMV 984 (1119)
Q Consensus 930 ~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v 984 (1119)
....... ....+...++| .+.|+++||+++.+ +++++ |++..+..
T Consensus 236 ~~~~~~~--~~~~l~~~ldG-------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 236 PSGQGIN--NLDNLRDYLDG-------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp CCCSHHH--HHHTTHHHHHC-------SSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred cccCcch--HHHHHHHHhcC-------CCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 1111110 11222333333 24567778888877 45544 45444333
No 184
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.11 E-value=0.0038 Score=74.94 Aligned_cols=171 Identities=12% Similarity=0.078 Sum_probs=94.1
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----hCC--cEEEEecCcc-
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----AGA--NFINISMSSI- 888 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~e-----lg~--~fi~V~~s~L- 888 (1119)
..++|.+...+.|.+.+... ....+-++|+||+|+|||+||..+++. ..+ .++.++....
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 46899999999999877520 112356999999999999999998642 122 2333332221
Q ss_pred ----cccc------c-----------cchHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhh
Q 001227 889 ----TSKW------F-----------GEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 946 (1119)
Q Consensus 889 ----~s~~------~-----------G~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ 946 (1119)
.... . ...+.....+...... .+|.+|+|||++.. . .+..
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------~----~l~~---- 253 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------W----VLKA---- 253 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------H----HHHT----
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------H----HHHH----
Confidence 0000 0 0111222222222222 26799999999642 0 1111
Q ss_pred ccCCcccCCccEEEEEecCCCCCCcHHHHhcccccccc---CCCCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcH
Q 001227 947 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV---NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1023 (1119)
Q Consensus 947 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v---~lPd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg 1023 (1119)
+ ..+..||.||........ . . ...+.+ ...+.++-.++|.................|+..++|+ +
T Consensus 254 ---l----~~~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-P 321 (591)
T 1z6t_A 254 ---F----DSQCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-P 321 (591)
T ss_dssp ---T----CSSCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-H
T ss_pred ---h----cCCCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-c
Confidence 1 123567777765432110 0 0 122333 3578888888888876542212234578899999886 4
Q ss_pred HHHHHH
Q 001227 1024 SDLKNL 1029 (1119)
Q Consensus 1024 ~DL~~L 1029 (1119)
-.|..+
T Consensus 322 Lal~~~ 327 (591)
T 1z6t_A 322 LVVSLI 327 (591)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 185
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.05 E-value=0.00021 Score=84.42 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=27.2
Q ss_pred HHHHHHHhhccCCCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeeccCCC
Q 001227 559 NELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLD 616 (1119)
Q Consensus 559 ~~l~ev~~~esk~~p~Ilf~~die~~l~~~~~~~~~l~~~L~~L~g~vvvIgs~~~~d 616 (1119)
..+++.+.. .+|.||||| +..+..+.|+..|+ .|.+.|||+||..+
T Consensus 257 ~~~~~~~~~---~~~~iLfiD-------~~~~a~~~L~~~L~--~g~v~vI~at~~~e 302 (468)
T 3pxg_A 257 KKVMDEIRQ---AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDE 302 (468)
T ss_dssp HHHHHHHHT---CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTT
T ss_pred HHHHHHHHh---cCCeEEEEe-------CchhHHHHHHHhhc--CCCEEEEecCCHHH
Confidence 445555544 689999999 44555555555555 67999999999433
No 186
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.02 E-value=0.0026 Score=70.91 Aligned_cols=62 Identities=27% Similarity=0.303 Sum_probs=42.2
Q ss_pred ccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001227 320 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 395 (1119)
Q Consensus 320 sfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 395 (1119)
+|++|-. .+..+..|..+.....+.. ...+.|||+||+|| ..++||+++|+.++.++..++.
T Consensus 27 ~~~~iiG--~~~~~~~l~~~l~~~~~~~----------~~~~~vll~G~~Gt--GKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIG--QESIKKNLNVFIAAAKKRN----------ECLDHILFSGPAGL--GKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp SGGGCCS--CHHHHHHHHHHHHHHHHTT----------SCCCCEEEECSTTS--SHHHHHHHHHHHTTCCEEEEEG
T ss_pred CHHHhCC--hHHHHHHHHHHHHHHHhcC----------CCCCeEEEECcCCC--CHHHHHHHHHHHhCCCeEEecc
Confidence 5777543 3666666665544222111 12346999999999 7999999999998887666654
No 187
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.97 E-value=0.0028 Score=65.63 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 887 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~ 887 (1119)
+..-++|+||||+|||+|+..+|...+.+++.++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4456899999999999999999886677888888654
No 188
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.97 E-value=0.012 Score=63.18 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
..|++.|+||+|||+++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998776 777665555
No 189
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.95 E-value=0.0027 Score=72.78 Aligned_cols=75 Identities=27% Similarity=0.314 Sum_probs=51.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc----c------------cchHHHHHHHHHHHHhcC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----F------------GEGEKYVKAVFSLASKIA 911 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~----~------------G~~e~~I~~lF~~A~k~~ 911 (1119)
+..-++|+||||+|||+||..+|... +.+++.++...-.... . ...+..+..+....+...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 44569999999999999999987664 6788888875422111 0 122333333333344567
Q ss_pred CeEEEEcccccccc
Q 001227 912 PSVVFVDEVDSMLG 925 (1119)
Q Consensus 912 PsILfIDEID~L~~ 925 (1119)
+.+|+||.+..|..
T Consensus 153 ~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 153 IDVVVVDSVAALTP 166 (366)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCEEEEeChHHhcc
Confidence 89999999999974
No 190
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.94 E-value=0.0028 Score=72.46 Aligned_cols=75 Identities=24% Similarity=0.260 Sum_probs=51.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------cccchHHHHHHHHHHHHhcC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WFGEGEKYVKAVFSLASKIA 911 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~----------------~~G~~e~~I~~lF~~A~k~~ 911 (1119)
+..-++|+||||+|||+|+..++..+ +.++++++....... .....+..+..+....+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 34568999999999999999998764 667888887542210 01122333433334444567
Q ss_pred CeEEEEcccccccc
Q 001227 912 PSVVFVDEVDSMLG 925 (1119)
Q Consensus 912 PsILfIDEID~L~~ 925 (1119)
+.+++||.+..+++
T Consensus 140 ~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 140 VDLIVVDSVAALVP 153 (356)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCeEEehHhhhhcC
Confidence 89999999998875
No 191
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.92 E-value=0.0024 Score=67.20 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=49.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--h-------CCcEEEEecCcccc-c-------ccc----------------chH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATE--A-------GANFINISMSSITS-K-------WFG----------------EGE 897 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~e--l-------g~~fi~V~~s~L~s-~-------~~G----------------~~e 897 (1119)
+..-++|+||||+|||+|+..++.. . +...+.++...... . .++ ..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 3356899999999999999999985 2 45677887654100 0 000 011
Q ss_pred ---HHHHHHHHHHHhcCCeEEEEccccccccC
Q 001227 898 ---KYVKAVFSLASKIAPSVVFVDEVDSMLGR 926 (1119)
Q Consensus 898 ---~~I~~lF~~A~k~~PsILfIDEID~L~~~ 926 (1119)
..+..+...+....|.+|+||++..++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 12233444455568999999999988643
No 192
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.91 E-value=0.0033 Score=71.53 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=50.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----ccc------------chHHHHHHHHHHHHhcC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 911 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~----~~G------------~~e~~I~~lF~~A~k~~ 911 (1119)
+..-++|+||||+|||+||..++... +.+++.++...-... .+| ..+..+..+...+....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 44569999999999999999998654 667777776542211 011 12333333334444667
Q ss_pred CeEEEEcccccccc
Q 001227 912 PSVVFVDEVDSMLG 925 (1119)
Q Consensus 912 PsILfIDEID~L~~ 925 (1119)
|.+|+||++..++.
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 99999999999873
No 193
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.89 E-value=0.005 Score=64.10 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=23.4
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcC
Q 001227 360 CPRILLSGPAGSEIYQETLAKALAKHFS 387 (1119)
Q Consensus 360 s~rILLsgp~GsE~Yqe~LakALA~~f~ 387 (1119)
.+.|||+||+|| ...+||+++|+.+.
T Consensus 52 ~~~~ll~G~~G~--GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKS--GRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTS--SHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCC--CHHHHHHHHHHHHH
Confidence 578999999999 79999999998776
No 194
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.89 E-value=0.016 Score=69.16 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=50.3
Q ss_pred ccccccccchhhHHHHHHHhhhhh-ccc-cccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccC
Q 001227 320 SFESFPYYLSDITKNVLIASTYVH-LKC-NNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 397 (1119)
Q Consensus 320 sfd~fPyylse~tk~~L~~~~~~h-L~~-~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~ 397 (1119)
+|+++-. .+..+..|....-.. ..+ ..+.+.+.+-.+..+.+||+||+|| ...+||+|||+.++.+++.++.+.
T Consensus 37 ~~~dliG--~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGt--GKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 37 NLQQVCG--NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGI--GKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp SGGGCCS--CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTS--SHHHHHHHHHHHTTCEEEEECTTS
T ss_pred CHHHhcC--CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCC--CHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4555433 355555555443321 111 2333444444456689999999999 799999999999999999888765
Q ss_pred CCC
Q 001227 398 LPG 400 (1119)
Q Consensus 398 ~~g 400 (1119)
+.+
T Consensus 113 ~~~ 115 (516)
T 1sxj_A 113 VRS 115 (516)
T ss_dssp CCC
T ss_pred cch
Confidence 443
No 195
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.84 E-value=0.021 Score=63.52 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=29.1
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001227 361 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 395 (1119)
Q Consensus 361 ~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs 395 (1119)
+.+||.||||| .+.+||||||+.++.++..+..
T Consensus 47 ~~vll~G~pGt--GKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPGL--AKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CCEEEESCCCH--HHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCCC--cHHHHHHHHHHHhCCCeEEEec
Confidence 57999999999 7999999999999988776653
No 196
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.82 E-value=0.0025 Score=70.83 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=29.3
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhc---CCeEEEEec
Q 001227 359 MCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDS 395 (1119)
Q Consensus 359 ~s~rILLsgp~GsE~Yqe~LakALA~~f---~a~LL~lDs 395 (1119)
..+-+||.||+|| ...+||+|+|+++ +.+++.++.
T Consensus 36 ~~~~lll~G~~Gt--GKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGT--GKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSS--SHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCC--cHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 3467999999999 7999999999998 777766653
No 197
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.79 E-value=0.0068 Score=60.25 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc-----ChhhHHHHHHHHhcCCCCEEEEeecc
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLENLPSNVVVIGSHT 613 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~~-----~~~~~~~l~~~L~~L~g~vvvIgs~~ 613 (1119)
.++.+++.+.. ..+|.||+|||++.+... ..++.+.+...++ .+++.+|++++
T Consensus 102 ~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~ 159 (195)
T 1jbk_A 102 RLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATT 159 (195)
T ss_dssp HHHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEEC
T ss_pred HHHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCC
Confidence 34555554433 357999999999996432 4566777777776 46788888887
No 198
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.79 E-value=0.015 Score=75.10 Aligned_cols=172 Identities=10% Similarity=0.070 Sum_probs=96.7
Q ss_pred ccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--C--cEEEEecCccc
Q 001227 817 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--A--NFINISMSSIT 889 (1119)
Q Consensus 817 ddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g--~--~fi~V~~s~L~ 889 (1119)
..++|.+..+++|.+.+... ....+-|.|+|+.|+|||+||+.+++.. . + .++.++.+...
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred ceeccHHHHHHHHHHHHhhc------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 36899999999999987521 1123568999999999999999987652 1 2 23344433210
Q ss_pred c------------c---------cccchHHHHHHHHHHHHh--cCCeEEEEccccccccCCCCCchhHHHHHHHHhhhhh
Q 001227 890 S------------K---------WFGEGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 946 (1119)
Q Consensus 890 s------------~---------~~G~~e~~I~~lF~~A~k--~~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ 946 (1119)
. . ........+...+..... .++.+|+||+++... .
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------~------- 250 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------V------- 250 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------H-------
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------H-------
Confidence 0 0 000111222222222222 237899999997430 1
Q ss_pred ccCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCC-CCHHHHHHHHHHHHhhcccCChhcHHHHHHHcCCCcHHH
Q 001227 947 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL-PDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1025 (1119)
Q Consensus 947 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~l-Pd~eeR~eILk~ll~k~~l~~d~dl~~LA~~TeGysg~D 1025 (1119)
+..+. ....||.||..+...... ......+.+.. .+.++-.++|..+.............+|++.+.|. +-.
T Consensus 251 ~~~~~----~~~~ilvTtR~~~~~~~~--~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLa 323 (1249)
T 3sfz_A 251 LKAFD----NQCQILLTTRDKSVTDSV--MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLV 323 (1249)
T ss_dssp HTTTC----SSCEEEEEESSTTTTTTC--CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHH
T ss_pred HHhhc----CCCEEEEEcCCHHHHHhh--cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHH
Confidence 11111 234677788655332110 11224456665 78888888888776443222233477889998876 334
Q ss_pred HHH
Q 001227 1026 LKN 1028 (1119)
Q Consensus 1026 L~~ 1028 (1119)
|+.
T Consensus 324 l~~ 326 (1249)
T 3sfz_A 324 VSL 326 (1249)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 199
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.71 E-value=0.00082 Score=68.19 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=29.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
.+.|+|+|+||+|||++++.+|+.++++++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357999999999999999999999999987654
No 200
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.66 E-value=0.0014 Score=65.85 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 886 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s 886 (1119)
.-|+|+|+||+|||+++++++..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4699999999999999999999999988877643
No 201
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.62 E-value=0.0075 Score=68.87 Aligned_cols=75 Identities=27% Similarity=0.339 Sum_probs=49.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----ccc------------chHHHHHHHHHHHHhcC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 911 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~----~~G------------~~e~~I~~lF~~A~k~~ 911 (1119)
+..-++|+|+||+|||+||..+|... +.+++.++....... ..| ..+.....+-..++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 44569999999999999999998664 678888887432111 000 11222222222334567
Q ss_pred CeEEEEcccccccc
Q 001227 912 PSVVFVDEVDSMLG 925 (1119)
Q Consensus 912 PsILfIDEID~L~~ 925 (1119)
+.+|+||.+..+..
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 89999999999874
No 202
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.61 E-value=0.0029 Score=69.74 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=28.1
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 360 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 360 s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
.+.|||+||+|| ..++||+++|+.++.++..++
T Consensus 38 ~~~vll~G~~Gt--GKT~la~~i~~~~~~~~~~~~ 70 (324)
T 1hqc_A 38 LEHLLLFGPPGL--GKTTLAHVIAHELGVNLRVTS 70 (324)
T ss_dssp CCCCEEECCTTC--CCHHHHHHHHHHHTCCEEEEC
T ss_pred CCcEEEECCCCC--CHHHHHHHHHHHhCCCEEEEe
Confidence 467999999999 799999999999887766554
No 203
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.58 E-value=0.0022 Score=66.25 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=23.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA---GANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el---g~~fi~V 883 (1119)
-++++||+|+|||+++..++..+ +.+++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999987776554 5555544
No 204
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.57 E-value=0.058 Score=63.29 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=51.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--------------------cccchHHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--------------------WFGEGEKYVKAVFSLA 907 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~--------------------~~G~~e~~I~~lF~~A 907 (1119)
++.-|++.|++|+||||++..+|..+ |..+..+++...... ........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998776 677777765432110 0112344556677777
Q ss_pred HhcCCeEEEEcccccc
Q 001227 908 SKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 908 ~k~~PsILfIDEID~L 923 (1119)
......+|+||...++
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777899999988554
No 205
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.54 E-value=0.0061 Score=68.97 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccc-c-------ccc----------------chH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS-K-------WFG----------------EGE 897 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---------g~~fi~V~~s~L~s-~-------~~G----------------~~e 897 (1119)
+..-++|+||||+|||+||..+|... +..+++++...... . .++ ..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 33458999999999999999998873 55778888755211 0 000 011
Q ss_pred ---HHHHHHHHHHHh--cCCeEEEEccccccccC
Q 001227 898 ---KYVKAVFSLASK--IAPSVVFVDEVDSMLGR 926 (1119)
Q Consensus 898 ---~~I~~lF~~A~k--~~PsILfIDEID~L~~~ 926 (1119)
..+..+...+.. ..+.+|+||.+..++..
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 122333444555 67899999999998743
No 206
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.53 E-value=0.019 Score=64.22 Aligned_cols=134 Identities=10% Similarity=0.014 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--ChhhHHHHHHHHhcC--CCCEEEEeeccCCCcccccCCCCCceeecc
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLTG--NNDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKF 632 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~~--~~~~~~~l~~~L~~L--~g~vvvIgs~~~~d~~k~k~~~~~~~~~~~ 632 (1119)
+++.+++.+.. ...|.||+|||++.+... ..+....+...++.+ ..++++|+++|..+.
T Consensus 117 ~~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~--------------- 179 (387)
T 2v1u_A 117 VYERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF--------------- 179 (387)
T ss_dssp HHHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT---------------
T ss_pred HHHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch---------------
Confidence 35556666543 346999999999996554 455555555555555 568999999983211
Q ss_pred CcchhhhhcccCCCCccccccccccchHHHHHhhhhCCC-eEEEeCCChhhHHHHHHHHHhhhhhhhhcccchhHHHHHh
Q 001227 633 GSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPN-KVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVL 711 (1119)
Q Consensus 633 ~~~~~~~~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~-~i~i~~P~DeALLRRfe~q~e~~Lpd~~gR~~Il~IhT~l 711 (1119)
++.++ ..+..+|+. .|.+++|+.+.+..-+...+...+.
T Consensus 180 ------------~~~l~-------------~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--------------- 219 (387)
T 2v1u_A 180 ------------VENLE-------------PRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN--------------- 219 (387)
T ss_dssp ------------SSSSC-------------HHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC---------------
T ss_pred ------------HhhhC-------------HHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc---------------
Confidence 11222 334455655 7888888888776655544432111
Q ss_pred hhCCCCcccchhhhcccC---CCCHHHHHHHHhhhhhhhhh
Q 001227 712 SRNGLDCVDLESLCIKDQ---TLTTEGVEKIVGWALSHHFM 749 (1119)
Q Consensus 712 ~~~~l~~~~L~~LA~~tk---g~sgadI~~Lv~~A~s~al~ 749 (1119)
...+++..++.++..+. |. .-.+..+|..|...+..
T Consensus 220 -~~~~~~~~~~~l~~~~~~~~G~-~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 220 -PGVLDPDVVPLCAALAAREHGD-ARRALDLLRVAGEIAER 258 (387)
T ss_dssp -TTTBCSSHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHH
Confidence 11233444455555554 32 23445667776655543
No 207
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.51 E-value=0.018 Score=58.58 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=30.6
Q ss_pred CCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeecc
Q 001227 571 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 613 (1119)
Q Consensus 571 ~~p~Ilf~~die~~l~~~~~~~~~l~~~L~~L~g~vvvIgs~~ 613 (1119)
..+.||+|||++.+ . .+..+.|...++....++++|++++
T Consensus 101 ~~~~vliiDe~~~l-~--~~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADAL-T--ADAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGS-C--HHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhc-C--HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 56889999999994 3 2345567777887788888888887
No 208
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=96.51 E-value=0.0047 Score=60.07 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=60.8
Q ss_pred CCCceeeecceeeeeccc-ccceeecCCCCcccceEEeEeecCCcceeEEEEecCcceEEEcCeecCCCceEEeecCCeE
Q 001227 11 GNSHLSMTGAVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDEL 89 (1119)
Q Consensus 11 ~~~~~~~~~~~~tvg~~~-~~~~~l~d~~~~~~~c~l~~~~~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~~gde~ 89 (1119)
+--.+++....++||+.. .|||.|.|+.++..||+|...+++ ..| .|+.+.++|||..+.... .|..|+-+
T Consensus 15 ~G~~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g----~~L--~~s~ngt~vdG~~v~~~~--~L~~g~~l 86 (123)
T 4a0e_A 15 RGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG----IRL--TDSAEPLLQEGLPVPLGT--LLRAGSCL 86 (123)
T ss_dssp TTCEEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE----EEE--EEESSCCEETTEECCTTC--BCCTTSCE
T ss_pred CCcEEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe----EEE--EeccCCEEECCEEccccc--ccCCCCEE
Confidence 444678888999999998 999999999999999999977655 444 388888999999977654 77777776
Q ss_pred EecCC
Q 001227 90 VFSPS 94 (1119)
Q Consensus 90 vf~~~ 94 (1119)
--|..
T Consensus 87 ~lG~~ 91 (123)
T 4a0e_A 87 EVGFL 91 (123)
T ss_dssp EETTE
T ss_pred EEccE
Confidence 54443
No 209
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.50 E-value=0.0036 Score=84.70 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=55.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc----cc--------chHHHHHHHHHHHHh----
Q 001227 849 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG--------EGEKYVKAVFSLASK---- 909 (1119)
Q Consensus 849 ~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~----~G--------~~e~~I~~lF~~A~k---- 909 (1119)
..|..-++|+|+||+|||+||..+|..+ +.++++++.......+ +| ..+..+..++..+++
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 3455679999999999999999998876 4579999887644432 22 111224445555544
Q ss_pred cCCeEEEEcccccccc
Q 001227 910 IAPSVVFVDEVDSMLG 925 (1119)
Q Consensus 910 ~~PsILfIDEID~L~~ 925 (1119)
..|++||||.++.++.
T Consensus 809 ~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTP 824 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred cCCCEEEEcchhhhcc
Confidence 6799999999999975
No 210
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.49 E-value=0.013 Score=62.80 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=44.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc-------cccccccch-----HHHHHHHHHHHHh----cCCe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS-------ITSKWFGEG-----EKYVKAVFSLASK----IAPS 913 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~-------L~s~~~G~~-----e~~I~~lF~~A~k----~~Ps 913 (1119)
.-++++||+|+|||+++..++..+ +..++.+.... +.+. .|-. ......++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 458999999999999988887665 66666664322 1111 1110 0012345555554 3478
Q ss_pred EEEEcccccc
Q 001227 914 VVFVDEVDSM 923 (1119)
Q Consensus 914 ILfIDEID~L 923 (1119)
+|+|||+..+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999876
No 211
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.46 E-value=0.0048 Score=69.14 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=50.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCccc-cc-------ccc----------------chH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSIT-SK-------WFG----------------EGE 897 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---------g~~fi~V~~s~L~-s~-------~~G----------------~~e 897 (1119)
+..-++|+||||+|||+||..+|... +.++++++..... .. .++ ..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 34569999999999999999999875 5577888876521 00 000 011
Q ss_pred ---HHHHHHHHHHHh-cCCeEEEEcccccccc
Q 001227 898 ---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 925 (1119)
Q Consensus 898 ---~~I~~lF~~A~k-~~PsILfIDEID~L~~ 925 (1119)
..+..+...+.. ..+.+|+||.+..++.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 123344445555 6789999999998874
No 212
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.46 E-value=0.008 Score=66.57 Aligned_cols=59 Identities=22% Similarity=0.224 Sum_probs=43.1
Q ss_pred ccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001227 320 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 396 (1119)
Q Consensus 320 sfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~ 396 (1119)
+|++|... ++.+..|..+.- . ....+-+|+.||+|| ...+||+|+|+.++.+++-++.+
T Consensus 24 ~~~~ivg~--~~~~~~l~~~l~----~----------~~~~~~~L~~G~~G~--GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 24 TIDECILP--AFDKETFKSITS----K----------GKIPHIILHSPSPGT--GKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp STTTSCCC--HHHHHHHHHHHH----T----------TCCCSEEEECSSTTS--SHHHHHHHHHHHTTEEEEEEETT
T ss_pred CHHHHhCc--HHHHHHHHHHHH----c----------CCCCeEEEeeCcCCC--CHHHHHHHHHHHhCCCEEEEccc
Confidence 57776654 666766665543 1 112245799999999 79999999999999888888743
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.45 E-value=0.0015 Score=67.53 Aligned_cols=34 Identities=38% Similarity=0.520 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
+...|+|.||||+|||++++++|..++++++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457999999999999999999999999887554
No 214
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.39 E-value=0.002 Score=64.04 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
-|+|.|+||+|||++++.++..++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998886554
No 215
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.35 E-value=0.013 Score=61.55 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
+..-++|.||||+|||+|+..++... +.+++.++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 33568999999999999998886543 5667666653
No 216
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.34 E-value=0.0087 Score=67.40 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=47.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccc----cc------------cchHHHHHHHHHH---HHh
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK----WF------------GEGEKYVKAVFSL---ASK 909 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~~s~L~s~----~~------------G~~e~~I~~lF~~---A~k 909 (1119)
-++|+||||+|||+|+..++... +..+++++...-... .+ ...++..-.+.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988775443 667888887542110 01 1122220122222 245
Q ss_pred cCCeEEEEccccccccC
Q 001227 910 IAPSVVFVDEVDSMLGR 926 (1119)
Q Consensus 910 ~~PsILfIDEID~L~~~ 926 (1119)
..|.+|+||-|..|++.
T Consensus 110 ~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TCCEEEEEECSTTCBCC
T ss_pred cCceEEEEecccccccc
Confidence 57999999999999753
No 217
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.29 E-value=0.033 Score=67.22 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=51.4
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC--CCcHHHHhccccccccCCCCHH
Q 001227 913 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDAP 990 (1119)
Q Consensus 913 sILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRF~~~I~v~lPd~e 990 (1119)
-+|+|||++.|+.... ......+..+...- ....|-+|.+|.+|. .++..++.-|...|.+.+.+..
T Consensus 345 ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~G------Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----KKVEELIARIAQKA------RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC-----HHHHHHHHHHHHHC------TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh-----HHHHHHHHHHHHHH------hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 5899999998863211 11223333333321 125688888888886 8999999999888999999988
Q ss_pred HHHHHHH
Q 001227 991 NREKIIR 997 (1119)
Q Consensus 991 eR~eILk 997 (1119)
+...++.
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8877764
No 218
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.27 E-value=0.0023 Score=64.82 Aligned_cols=31 Identities=48% Similarity=0.861 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
..|+|+|+||+|||+++++++..++++++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 5699999999999999999999999887654
No 219
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.26 E-value=0.0021 Score=65.19 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
.|+|.|+||+|||++|+.+++.+|++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5999999999999999999999999887543
No 220
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.21 E-value=0.0037 Score=63.43 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+.-|+|.|+||+|||++++.++..++++++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 45799999999999999999999999887653
No 221
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.20 E-value=0.0031 Score=63.63 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.|+|.|+||+|||++|++||..++++++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 599999999999999999999999887653
No 222
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.19 E-value=0.012 Score=61.26 Aligned_cols=37 Identities=30% Similarity=0.323 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecCc
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 887 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg---------~~fi~V~~s~ 887 (1119)
+..-+.|.||+|+|||+|++.|+...- ...+.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 335699999999999999999997542 2366666543
No 223
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.18 E-value=0.015 Score=62.72 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=32.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 888 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L 888 (1119)
.+..++|.|+||+|||++|+.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34679999999999999999999999876777776554
No 224
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=96.13 E-value=0.0066 Score=65.61 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=48.9
Q ss_pred eeeeecccccceeecCCCCcccceEEeEeecC--CcceeEEEEec-CcceEEEcCeecCCCceEEee-cCCeEEec
Q 001227 21 VFTVGHNRQCDLYLKDPSISKNLCRLRRIENG--GPSGALLEITG-GKGEVEVNGNVHPKDSQVVLR-GGDELVFS 92 (1119)
Q Consensus 21 ~~tvg~~~~~~~~l~d~~~~~~~c~l~~~~~~--~~~~~~le~~~-~~~~v~vng~~~~~~~~~~l~-~gde~vf~ 92 (1119)
.+|||+...||+.|.|. ++ ++.++.. ++ |. -.||..| ++|.|+|||+.+... ..|+ .||+|.|+
T Consensus 93 ~itIG~~~~~dI~l~~~--~~-~~~~~~~-~~~~~~--~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I~ig 160 (238)
T 1wv3_A 93 TMTIGPNAYDDMVIQSL--MN-AIIIKDF-QSIQES--QYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHIYVE 160 (238)
T ss_dssp EEEEESSTTSSEECTTC--SS-CEEEECG-GGHHHH--CEEEEECCTTCCEEETTEECCSS--EEEEETTCEEEET
T ss_pred eEEEeCCCCCeEEeCCC--ee-EEEEecc-cCcCCc--EEEEEccCCCCCEEECCEEeccc--eeccCCcCEEEEC
Confidence 89999999999999998 33 3333332 11 22 4589988 668899999999765 4799 99999883
No 225
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.11 E-value=0.004 Score=62.22 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
..|+|.|++|+|||++++.+|..+|++++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47999999999999999999999999987643
No 226
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.10 E-value=0.028 Score=59.18 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHH--HH--hCCcEEEEec
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVA--TE--AGANFINISM 885 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA--~e--lg~~fi~V~~ 885 (1119)
+..-+.|.||+|+|||+|++.++ .. .+...+.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 33569999999999999999988 32 3445555544
No 227
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.09 E-value=0.0027 Score=64.94 Aligned_cols=32 Identities=41% Similarity=0.713 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-hCCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE-AGANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e-lg~~fi~V~ 884 (1119)
..|+|+|+||+|||++++.++.. +|++++.++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 56999999999999999999999 787776543
No 228
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.07 E-value=0.011 Score=68.56 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=48.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCccccc--------ccc-------------------
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITSK--------WFG------------------- 894 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---------g~~fi~V~~s~L~s~--------~~G------------------- 894 (1119)
+..-++|+||||+|||+|++.++... +...++++....... .++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChH
Confidence 34569999999999999999876443 234777876542110 011
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEccccccccC
Q 001227 895 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 926 (1119)
Q Consensus 895 ~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 926 (1119)
.....+..+...+....|.+|+||++-.++..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 00112333444455567999999999988754
No 229
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.05 E-value=0.06 Score=60.15 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-------c-------------ccchHHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-------W-------------FGEGEKYVKAVFSLA 907 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~-------~-------------~G~~e~~I~~lF~~A 907 (1119)
++.-++|.||+|+|||+++..+|..+ +..+..+++...... | .+.....+...+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44669999999999999999998765 555655554321110 0 011122223345555
Q ss_pred HhcCCeEEEEccccc
Q 001227 908 SKIAPSVVFVDEVDS 922 (1119)
Q Consensus 908 ~k~~PsILfIDEID~ 922 (1119)
....+.+|+||+.-.
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 667789999998853
No 230
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.03 E-value=0.0044 Score=61.91 Aligned_cols=30 Identities=30% Similarity=0.695 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
..|.|.||+|+||||+++.+|..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 469999999999999999999999976653
No 231
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.03 E-value=0.0047 Score=64.68 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+..|+|.|+||+||||+++.+|+.++++++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45799999999999999999999999877654
No 232
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.01 E-value=0.01 Score=69.72 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el 876 (1119)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998776
No 233
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.01 E-value=0.0048 Score=62.42 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.-|+|.|+||+|||++|+.++..++++++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 5699999999999999999999999877543
No 234
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.01 E-value=0.037 Score=66.32 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=91.1
Q ss_pred cCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH----HhCCcE---EEEecCccc---
Q 001227 820 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT----EAGANF---INISMSSIT--- 889 (1119)
Q Consensus 820 ~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~----elg~~f---i~V~~s~L~--- 889 (1119)
.|.+..+++|.+.+.. .. ....+-|.|+|+.|+|||+||+.+++ .....| +.++.+.-.
T Consensus 131 ~GR~~~~~~l~~~L~~---------~~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE---------MC--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 199 (549)
T ss_dssp CCCHHHHHHHHHHHHH---------HT--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred CCchHHHHHHHHHHhc---------cc--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCC
Confidence 4999999999887752 10 11235689999999999999999997 232221 223332210
Q ss_pred ---------ccccc-----------c-hHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhc
Q 001227 890 ---------SKWFG-----------E-GEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 947 (1119)
Q Consensus 890 ---------s~~~G-----------~-~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~l 947 (1119)
..... . ....+...+...-.. ++.+|+||+++.. ..+ .+...
T Consensus 200 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-------------~~~--~~~~~- 263 (549)
T 2a5y_B 200 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-------------ETI--RWAQE- 263 (549)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-------------HHH--HHHHH-
T ss_pred HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-------------hhh--ccccc-
Confidence 00000 0 011222333333333 3789999999753 011 11110
Q ss_pred cCCcccCCccEEEEEecCCCCCCcHHHHhccccccccCCCCHHHHHHHHHHHHhhcccCCh--hcHHHHHHHcCCCcHHH
Q 001227 948 DGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD--VDLEGIANMADGYSGSD 1025 (1119)
Q Consensus 948 dgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ll~k~~l~~d--~dl~~LA~~TeGysg~D 1025 (1119)
....||.||....... . .......+.++..+.++-.++|...........+ .....|++.+.|. +-.
T Consensus 264 --------~gs~ilvTTR~~~v~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl-PLA 332 (549)
T 2a5y_B 264 --------LRLRCLVTTRDVEISN-A-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PAT 332 (549)
T ss_dssp --------TTCEEEEEESBGGGGG-G-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HHH
T ss_pred --------CCCEEEEEcCCHHHHH-H-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC-hHH
Confidence 2246777776532111 0 0001245778888888888888876422211011 1256677777765 444
Q ss_pred HHHH
Q 001227 1026 LKNL 1029 (1119)
Q Consensus 1026 L~~L 1029 (1119)
|+.+
T Consensus 333 l~~~ 336 (549)
T 2a5y_B 333 LMMF 336 (549)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 235
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.99 E-value=0.029 Score=61.32 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=30.0
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhc---CCeEEEEeccCC
Q 001227 361 PRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLL 398 (1119)
Q Consensus 361 ~rILLsgp~GsE~Yqe~LakALA~~f---~a~LL~lDs~~~ 398 (1119)
..+||.||+|| ...+|||+||+.+ +.++..+|...+
T Consensus 48 ~~~ll~G~~Gt--GKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGV--GKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSS--SHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCCc--CHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 46999999999 7999999999998 566787776543
No 236
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.98 E-value=0.0044 Score=61.11 Aligned_cols=29 Identities=45% Similarity=0.690 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
-|+|.||||+|||++|+.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5899999999999999999 8889887654
No 237
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.97 E-value=0.0039 Score=67.46 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINISM 885 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~~ 885 (1119)
-++|.||+|+|||+||++||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48999999999999999999999998887764
No 238
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.96 E-value=0.0058 Score=63.00 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
..|+|.|+||+|||++|+.++..++++++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4699999999999999999999999887654
No 239
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.94 E-value=0.0054 Score=62.35 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=28.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
+.-|+|.|+||+|||++++.+++.++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 357999999999999999999999998876543
No 240
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.94 E-value=0.0049 Score=61.46 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.|+|.|+||+|||++|+.++..++++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 599999999999999999999999887653
No 241
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.87 E-value=0.012 Score=63.62 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecCc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSS 887 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e---lg~~fi~V~~s~ 887 (1119)
.-|+|.|+||+|||++|+.++.. .|.+++.++...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 46999999999999999999988 688888666544
No 242
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.83 E-value=0.041 Score=57.75 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=48.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecCccccc-------------------------cc--------
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATE----AGANFINISMSSITSK-------------------------WF-------- 893 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~e----lg~~fi~V~~s~L~s~-------------------------~~-------- 893 (1119)
+..-++|+|+||+|||+||..+|.. .+.+++.++...-... +.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPS 108 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----------
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhccc
Confidence 3355999999999999999887643 3677777765321000 00
Q ss_pred ---------cchHHHHHHHHHHHHhcCCeEEEEcccccccc
Q 001227 894 ---------GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG 925 (1119)
Q Consensus 894 ---------G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~ 925 (1119)
...+..+..+...+....+.+++||.+..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~ 149 (251)
T 2zts_A 109 EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIAL 149 (251)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHH
T ss_pred chhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhh
Confidence 00122344455566777889999999988753
No 243
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.83 E-value=0.0053 Score=62.10 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
..|+|.|+||+||||+++.+++.++++++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4699999999999999999999999776543
No 244
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.80 E-value=0.007 Score=62.40 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+.-|+|.|++|+||||+|+.|+..+++.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 35699999999999999999999998776653
No 245
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.79 E-value=0.055 Score=60.34 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
.+..-++|.|+||+|||+||..+|... +.+++.++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 344569999999999999999998664 4677777753
No 246
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.76 E-value=0.013 Score=58.17 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEeecc
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHT 613 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~------~~~~~~~~l~~~L~~L~g~vvvIgs~~ 613 (1119)
.+..+++.+.. ..+|.||||||++.+.. ...++.+.|...++ .+++++|++++
T Consensus 102 ~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~--~~~~~ii~~~~ 160 (187)
T 2p65_A 102 RLKSILKEVQD--AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA--RGELRCIGATT 160 (187)
T ss_dssp HHHHHHHHHHH--TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH--TTCSCEEEEEC
T ss_pred HHHHHHHHHHh--cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh--cCCeeEEEecC
Confidence 34555555544 14789999999999642 13677777877777 47888999988
No 247
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.74 E-value=0.013 Score=64.60 Aligned_cols=37 Identities=38% Similarity=0.502 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 888 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~L 888 (1119)
+.-++|.||||+||||+|+.++.+++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4679999999999999999999998555666765333
No 248
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.73 E-value=0.0049 Score=62.10 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFI 881 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi 881 (1119)
.-|+|.|+||+|||++|+.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46999999999999999999999999877
No 249
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.73 E-value=0.072 Score=63.60 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=49.5
Q ss_pred Ce-EEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC--CCcHHHHhccccccccCCCC
Q 001227 912 PS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPD 988 (1119)
Q Consensus 912 Ps-ILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRF~~~I~v~lPd 988 (1119)
|- +|+|||...++.. .......++..+...-. ...+-+|.+|.++. .++..++..|..+|.+.+.+
T Consensus 297 P~ivlvIDE~~~ll~~-----~~~~~~~~l~~Lar~gR------a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s 365 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-----VGKKVEELIARLAQKAR------AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSS 365 (512)
T ss_dssp CEEEEEEETHHHHHHH-----HHHHHHHHHHHHHHHCG------GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSS
T ss_pred CcEEEEEeCHHHHHhh-----hhHHHHHHHHHHHHHhh------hCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCC
Confidence 44 8899999887531 01112223333322211 13577777887775 68888888898889999999
Q ss_pred HHHHHHHHHH
Q 001227 989 APNREKIIRV 998 (1119)
Q Consensus 989 ~eeR~eILk~ 998 (1119)
..+...++..
T Consensus 366 ~~dsr~ilg~ 375 (512)
T 2ius_A 366 KIDSRTILDQ 375 (512)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHhcCC
Confidence 9888887753
No 250
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.72 E-value=0.0075 Score=59.91 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
.|+|.|++|+|||++|+.+++.++++++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4899999999999999999999998877543
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.72 E-value=0.0049 Score=61.64 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=23.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-HhCCcEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVAT-EAGANFI 881 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~-elg~~fi 881 (1119)
.-|+|.|+||+|||++|+.++. ..++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4689999999999999999998 4554443
No 252
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.71 E-value=0.085 Score=59.18 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=30.3
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc-----------CCeEEEEeccC
Q 001227 360 CPRILLSGPAGSEIYQETLAKALAKHF-----------SARLLIVDSLL 397 (1119)
Q Consensus 360 s~rILLsgp~GsE~Yqe~LakALA~~f-----------~a~LL~lDs~~ 397 (1119)
.+-|||+||+|| ...+||+++|+.+ +.+++.++...
T Consensus 45 ~~~vll~G~~G~--GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 45 KFSNLFLGLTGT--GKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCEEEEEECTTS--SHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCcEEEECCCCC--CHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 467999999999 7999999999987 77777777543
No 253
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.71 E-value=0.0067 Score=63.15 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.|+|.||||+||||+|+.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999999887765
No 254
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.71 E-value=0.0081 Score=64.47 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
++..|+|.||||+||||+|+.+++.++++++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 457899999999999999999999998877654
No 255
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.70 E-value=0.037 Score=59.09 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 886 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s 886 (1119)
.++|+||+|+|||.+|.+++...+.+++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 599999999999999999998887777766654
No 256
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.70 E-value=0.0074 Score=60.89 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.-|+|.|+||+|||++++.++..++++++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5699999999999999999999999877654
No 257
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.69 E-value=0.0071 Score=62.85 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.|+|.||||+||||+|+.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 489999999999999999999999887755
No 258
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.68 E-value=0.0073 Score=61.53 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.-|+|.|+||+|||++|+.+++.++++++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999999776554
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.68 E-value=0.014 Score=65.00 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=48.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------------C----CcEEEEecCccc-cc-------ccc---------
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---------------G----ANFINISMSSIT-SK-------WFG--------- 894 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---------------g----~~fi~V~~s~L~-s~-------~~G--------- 894 (1119)
+..-++|+||||+|||+||..+|... | .++++++...-. .. .++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 33568999999999999999998763 2 567788765421 10 000
Q ss_pred -------chH---HHHHHHHHHHHh-cCCeEEEEcccccccc
Q 001227 895 -------EGE---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 925 (1119)
Q Consensus 895 -------~~e---~~I~~lF~~A~k-~~PsILfIDEID~L~~ 925 (1119)
..+ ..+..+...... ..+.+|+||.+..++.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 011 122334444455 5678999999998864
No 260
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.67 E-value=0.0082 Score=63.64 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+..|+|.|+||+|||++|+.||+.++++++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35799999999999999999999999877654
No 261
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.67 E-value=0.026 Score=64.15 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 887 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---------g~~fi~V~~s~ 887 (1119)
+..-+.|+||+|+|||+|++.++... +-.+++++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 33558999999999999999999876 23567777644
No 262
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.67 E-value=0.0065 Score=61.31 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
.-|+|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999887
No 263
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.66 E-value=0.0076 Score=73.06 Aligned_cols=33 Identities=39% Similarity=0.447 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
..++|.||||||||+++.+++..+ +.+++.+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 469999999999999999998755 666665543
No 264
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.64 E-value=0.0073 Score=63.61 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+..|+|.|+||+|||++++.|++.++++++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35799999999999999999999999877654
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.58 E-value=0.0098 Score=59.68 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
...++|.||+|+|||++++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3569999999999999999999998866554
No 266
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.57 E-value=0.015 Score=66.46 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=44.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC-ccc---------cccccchHHHHHHHHHHHHhcCCeEEEEc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 918 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s-~L~---------s~~~G~~e~~I~~lF~~A~k~~PsILfID 918 (1119)
.-++|.||+|+||||+.++++..+ +..++.+.-+ ++. ....+.....+...+..|-...|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 359999999999999999998765 3444443321 110 00111111234456777778899999999
Q ss_pred ccc
Q 001227 919 EVD 921 (1119)
Q Consensus 919 EID 921 (1119)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 993
No 267
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.57 E-value=0.0096 Score=61.25 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
+.-|+|.|++|+|||++++.+++.++++++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 356999999999999999999999998776543
No 268
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.53 E-value=0.0081 Score=62.99 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
..|+|.|+||+|||++|+.||..++++++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999999887765
No 269
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.52 E-value=0.0066 Score=61.64 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=30.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 887 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~ 887 (1119)
..-+.|.||+|+||||+++.|+...+...+.++..+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 356999999999999999999988777777777544
No 270
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.51 E-value=0.05 Score=59.20 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..-++|+||+|+|||+|+..++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999998644
No 271
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.47 E-value=0.0092 Score=62.92 Aligned_cols=29 Identities=41% Similarity=0.678 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
.|+|.||||+||+|.|+.||+.++++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 48899999999999999999999887654
No 272
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.45 E-value=0.011 Score=63.11 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFI 881 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi 881 (1119)
++-|+|.||||+||+|.|+.|++.++++.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 466889999999999999999999987765
No 273
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.44 E-value=0.045 Score=64.13 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 886 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s 886 (1119)
.+..-++|.|+||+|||+|+..+|... |.+++.++..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 344569999999999999999987654 5678777753
No 274
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.43 E-value=0.012 Score=59.57 Aligned_cols=32 Identities=28% Similarity=0.132 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
-|.|.|++|+|||++++.+++.+ |++++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 47899999999999999999988 899887763
No 275
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.39 E-value=0.0085 Score=62.81 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
..|+|.||||+|||++++.+|+.++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 569999999999999999999999976654
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.38 E-value=0.012 Score=60.78 Aligned_cols=31 Identities=39% Similarity=0.758 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFI 881 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~fi 881 (1119)
++.-+.|.||+|+|||++++.|+..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3456999999999999999999999976544
No 277
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.34 E-value=0.063 Score=58.73 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 885 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~ 885 (1119)
+..-++|.||||+|||+|++.||... |.+++.++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 33468999999999999999998665 446665553
No 278
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.32 E-value=0.015 Score=58.62 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
..-|.|.|++|+|||++++.++..+ |++++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 3568999999999999999999987 9999988753
No 279
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.31 E-value=0.012 Score=61.46 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.|+|.|+||+||||+|+.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999887665
No 280
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.29 E-value=0.063 Score=62.76 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 886 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s 886 (1119)
.+..-++|.|+||+|||+||..+|... +.+++.++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 344558999999999999999887653 5678887763
No 281
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.29 E-value=0.031 Score=63.04 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=30.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 886 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s 886 (1119)
..|+|.||+|+|||+||..+|+.++..++.++.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4699999999999999999999999988888753
No 282
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.26 E-value=0.032 Score=74.89 Aligned_cols=75 Identities=25% Similarity=0.328 Sum_probs=58.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecCc----------------cccccccchHHHHHHHHHHHHhcCCeE
Q 001227 854 GILLFGPPGTGKTMLAKAVATE---AGANFINISMSS----------------ITSKWFGEGEKYVKAVFSLASKIAPSV 914 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~e---lg~~fi~V~~s~----------------L~s~~~G~~e~~I~~lF~~A~k~~PsI 914 (1119)
-|+||||+|+|||+||-.++.+ .|-....++... +.-......|+.+..+...++..++++
T Consensus 1433 ~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~ 1512 (1706)
T 3cmw_A 1433 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1512 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCE
Confidence 3999999999999998877543 367777777643 222245566888999999999999999
Q ss_pred EEEccccccccCCC
Q 001227 915 VFVDEVDSMLGRRE 928 (1119)
Q Consensus 915 LfIDEID~L~~~r~ 928 (1119)
|+||-+..|.++..
T Consensus 1513 vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1513 IVVDSVAALTPKAE 1526 (1706)
T ss_dssp EEESCSTTCCCTTT
T ss_pred EEEccHHhCCcccc
Confidence 99999999987643
No 283
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.18 E-value=0.073 Score=55.19 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el 876 (1119)
.+.|.||+|+|||+|++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999998775
No 284
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.16 E-value=0.012 Score=59.87 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
.|.|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48899999999999999999999987653
No 285
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.15 E-value=0.014 Score=59.80 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=29.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 885 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el-g~~fi~V~~ 885 (1119)
+.-|.|.|++|+||||+++.+++.+ |++++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 3569999999999999999999998 688887653
No 286
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.13 E-value=0.011 Score=67.35 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
.+++|.|++|+|||+++++||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999888744
No 287
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.11 E-value=0.015 Score=60.63 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
..|.|.||+|+||||+++.++..++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 469999999999999999999999987654
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.09 E-value=0.0088 Score=60.33 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAG---ANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg---~~fi~V~ 884 (1119)
-|+|.|+||+||||+++.+++.++ .++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 589999999999999999999875 3355554
No 289
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.08 E-value=0.14 Score=59.84 Aligned_cols=73 Identities=19% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------cc----------ccchHHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------KW----------FGEGEKYVKAVFSLA 907 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s----------~~----------~G~~e~~I~~lF~~A 907 (1119)
++.-+++.||+|+||||++..+|..+ |..+..+++..... .. ...........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45668999999999999999998766 66766666532111 00 011222344455666
Q ss_pred HhcCCeEEEEcccccc
Q 001227 908 SKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 908 ~k~~PsILfIDEID~L 923 (1119)
....+.+|+||...++
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6567899999998654
No 290
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.06 E-value=0.014 Score=61.48 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.|+|.|+||+||||+++.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998766554
No 291
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.06 E-value=0.018 Score=58.56 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 855 ILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
|.|.|++|+||||+++.+++.+ |++++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 999886653
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.05 E-value=0.031 Score=60.95 Aligned_cols=70 Identities=26% Similarity=0.362 Sum_probs=42.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC--ccc--------cccccchHHHHHHHHHHHHhcCCeEEE
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS--SIT--------SKWFGEGEKYVKAVFSLASKIAPSVVF 916 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg----~~fi~V~~s--~L~--------s~~~G~~e~~I~~lF~~A~k~~PsILf 916 (1119)
+..-++|.||+|+||||++++++.... ..++...-+ .+. ...++.....++..+..+-...|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 334589999999999999999987652 223222211 000 001111112235556666667899999
Q ss_pred Eccc
Q 001227 917 VDEV 920 (1119)
Q Consensus 917 IDEI 920 (1119)
+||.
T Consensus 104 lDEp 107 (261)
T 2eyu_A 104 VGEM 107 (261)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 9998
No 293
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.91 E-value=0.011 Score=60.78 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
.|.|.|++|+|||++++.++. +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 887776654
No 294
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.85 E-value=0.019 Score=58.84 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
-|.|.|++|+|||++++.+|..+|++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6899999999999999999999998877543
No 295
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.84 E-value=0.081 Score=54.12 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.++++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999888776543
No 296
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.81 E-value=0.15 Score=53.41 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=65.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc---------cccccc-------------c----chHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS---------ITSKWF-------------G----EGEKYVKAV 903 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~---------L~s~~~-------------G----~~e~~I~~l 903 (1119)
..|++|+++|.|||++|-++|..+ |..+..+..-. +...+. . ..+......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 359999999999999999998665 77777763211 222210 0 012345556
Q ss_pred HHHHHhc----CCeEEEEccccccccCCCCCchhHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccc
Q 001227 904 FSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 979 (1119)
Q Consensus 904 F~~A~k~----~PsILfIDEID~L~~~r~s~~~~~~l~~ll~~Ll~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~ 979 (1119)
|..+++. ...+|+|||+-..+.-..- .. ..+++ .+.. .+...-||.|+|.+ ++.++..-|
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l--~~---~ev~~----~l~~----Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL--PL---EEVIS----ALNA----RPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS--CH---HHHHH----HHHT----SCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC--CH---HHHHH----HHHh----CcCCCEEEEECCCC---cHHHHHhCc
Confidence 6666553 3589999999654221111 11 11222 2221 23556788888763 566666554
Q ss_pred cc
Q 001227 980 RR 981 (1119)
Q Consensus 980 ~~ 981 (1119)
.+
T Consensus 173 ~V 174 (196)
T 1g5t_A 173 TV 174 (196)
T ss_dssp EE
T ss_pred ce
Confidence 43
No 297
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.79 E-value=0.097 Score=62.00 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 886 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s 886 (1119)
+..-++|.|+||+|||+||..+|... |.+++.++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 44569999999999999999998765 5678877764
No 298
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.75 E-value=0.029 Score=57.48 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGAN--FINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~--fi~V~ 884 (1119)
.-|+|.|+||+|||++++.++..++.. ++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 38 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE 38 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec
Confidence 469999999999999999999998763 54443
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.73 E-value=0.029 Score=57.87 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
++.-|.|.||+|+|||+++++++..+ |...+.++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 34568999999999999999999988 5554556543
No 300
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.73 E-value=0.1 Score=61.33 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=27.5
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 361 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 361 ~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
+.+||.||+|| ..++||+++|+.++.++.-+.
T Consensus 51 ~~vLL~GppGt--GKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPGT--GKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTTS--SHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCCC--cHHHHHHHHHHHhCCCeEEEE
Confidence 57999999999 799999999999977765544
No 301
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.73 E-value=0.14 Score=60.17 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=29.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
.+..-++|.|+||+|||+||..+|... |.+++.++..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 344559999999999999999987655 6788887753
No 302
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.71 E-value=0.021 Score=58.34 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
+..|.|.|++|+|||++++.++.. |++++..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 456999999999999999999998 87776543
No 303
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.65 E-value=0.026 Score=60.77 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
...|.|.||+|+|||++++.||+.+|++++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3468999999999999999999999987653
No 304
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.62 E-value=0.023 Score=60.61 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFI 881 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi 881 (1119)
+.-+.|.||+|+||||+++.|++.+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999999987654
No 305
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.60 E-value=0.011 Score=60.82 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=24.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGAN 879 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~ 879 (1119)
+.-|+|.|++|+|||++++.+++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3569999999999999999999987544
No 306
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.52 E-value=0.026 Score=60.71 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
..+.|.||+|+|||++++.|+..++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 579999999999999999999999987654
No 307
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.46 E-value=0.039 Score=63.25 Aligned_cols=70 Identities=26% Similarity=0.352 Sum_probs=43.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCc-c--------ccc-cccchHHHHHHHHHHHHhcCCeEEE
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS-I--------TSK-WFGEGEKYVKAVFSLASKIAPSVVF 916 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg----~~fi~V~~s~-L--------~s~-~~G~~e~~I~~lF~~A~k~~PsILf 916 (1119)
+...++|.||+|+||||++++++..+. ..++.+..+- + ... .++.....+...+..+-...|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 334699999999999999999987652 3343333211 0 000 0110111234455666667899999
Q ss_pred Eccc
Q 001227 917 VDEV 920 (1119)
Q Consensus 917 IDEI 920 (1119)
+||+
T Consensus 215 ldE~ 218 (372)
T 2ewv_A 215 VGEM 218 (372)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9999
No 308
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.45 E-value=0.33 Score=54.24 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhccChhhHHHHHHHHhcCC----CCEEEEeecc
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLP----SNVVVIGSHT 613 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~~~~~~~l~~~L~~L~----g~vvvIgs~~ 613 (1119)
+++.+.+.+.. ..+|.||+|||++.+ ..+....|...++.++ .++.||++++
T Consensus 112 ~~~~l~~~l~~--~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 112 FLALLVEHLRE--RDLYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHHHHHHH--TTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHHHHHhh--cCCeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 34455555543 356999999999995 5666667777776665 4888888877
No 309
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.43 E-value=0.019 Score=59.74 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
-|.|+|++|||||++++.++..+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4889999999999999999999898877644
No 310
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.40 E-value=0.036 Score=62.64 Aligned_cols=67 Identities=28% Similarity=0.365 Sum_probs=53.5
Q ss_pred hhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccCC
Q 001227 330 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 398 (1119)
Q Consensus 330 e~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lDs~~~ 398 (1119)
+..+..|..+...|.+...............+.|||.||+|| ..++||||||+.++.+++.++.+.+
T Consensus 21 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGt--GKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 21 EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGS--GKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTS--SHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCC--CHHHHHHHHHHHcCCCEEEechHHh
Confidence 677888888887777665443333455566789999999999 7999999999999999999987644
No 311
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.39 E-value=0.023 Score=58.61 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
-|.|.||+|+||||+++.++. +|++++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 588999999999999999998 88877643
No 312
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.37 E-value=0.11 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=17.4
Q ss_pred ceEEEEcCCCChHHHHHH-HHHHH
Q 001227 853 KGILLFGPPGTGKTMLAK-AVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LAr-AIA~e 875 (1119)
+.+++.+|+|+|||..+- .+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 479999999999998643 34444
No 313
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.35 E-value=0.014 Score=60.18 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
+.-|+|.|++|+|||++++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35699999999999999999999864
No 314
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.34 E-value=0.14 Score=59.69 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=53.4
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-ccc
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SIT 889 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~~s-~L~ 889 (1119)
.++++++-.......+..++. .+..-++|.||+|+||||++++++..+. ..++.+.-+ ++.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~---------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK---------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT---------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCHHHcCCCHHHHHHHHHHHH---------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 456677655555555555421 1223589999999999999999998874 234443321 110
Q ss_pred -c----ccccc-hHHHHHHHHHHHHhcCCeEEEEcccc
Q 001227 890 -S----KWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 890 -s----~~~G~-~e~~I~~lF~~A~k~~PsILfIDEID 921 (1119)
. ..+.. ...........+-+..|.++++.||.
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 00010 00122334444556789999999863
No 315
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=94.34 E-value=0.022 Score=72.92 Aligned_cols=77 Identities=27% Similarity=0.334 Sum_probs=61.7
Q ss_pred CCCCCCcccccccccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeecccCCCCcceeeecCCCCCCCCCCCCC
Q 001227 451 ALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFC 530 (1119)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~~~kvgv~fd~~~~~~~~l~~~~ 530 (1119)
+..++..+..-..+++|.-||||.||..+.+ .+.|.||.|+..--.+..--+-|.||.+.-.|++||+.|
T Consensus 1050 allkP~~a~~~L~~Q~F~LGDRVv~VqdsG~----------VPl~~kGTVVGi~~~~~~~~ldVvFD~~F~~G~tlggrc 1119 (1155)
T 3pie_A 1050 AILNAESSYVLLRSQRFHLGDRVMYIQDSGK----------VPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRL 1119 (1155)
T ss_pred HeeCHHHhhccccCCcccCCCeEEEecCCCC----------CccccceEEEEEecCCCceEEEEEeccCccCCCcccccc
Confidence 4445555555567899999999999986542 468999999887655555679999999999999999999
Q ss_pred CCCCCcc
Q 001227 531 EDDHGFF 537 (1119)
Q Consensus 531 ~~~~~~~ 537 (1119)
.+..|.-
T Consensus 1120 s~~RG~~ 1126 (1155)
T 3pie_A 1120 QTRRGLG 1126 (1155)
T ss_pred ccccccc
Confidence 9998844
No 316
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.32 E-value=0.03 Score=60.79 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=28.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
..|.|.|++|+|||++++.+|..++++|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46999999999999999999999999887643
No 317
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.22 E-value=0.04 Score=59.10 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=31.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecCcccc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMSSITS 890 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~--------fi~V~~s~L~s 890 (1119)
+.-|.|.|++|+|||++|+.|+..++++ ++.+++.++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 3569999999999999999999999876 34566666543
No 318
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.18 E-value=0.07 Score=58.10 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeecc
Q 001227 571 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 613 (1119)
Q Consensus 571 ~~p~Ilf~~die~~l~~~~~~~~~l~~~L~~L~g~vvvIgs~~ 613 (1119)
..+.||+|||+|. +. .+..+.|...++..++++++|++++
T Consensus 101 ~~~~vliiDe~~~-l~--~~~~~~L~~~le~~~~~~~~i~~~~ 140 (319)
T 2chq_A 101 APFKIIFLDEADA-LT--ADAQAALRRTMEMYSKSCRFILSCN 140 (319)
T ss_dssp CCCEEEEEETGGG-SC--HHHHHTTGGGTSSSSSSEEEEEEES
T ss_pred CCceEEEEeCCCc-CC--HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4577999999999 43 2344556667777788899999888
No 319
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.02 E-value=0.023 Score=64.38 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 886 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s 886 (1119)
+-|+|.||+|+|||+|+..||+.++..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4699999999999999999999999888877654
No 320
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.00 E-value=0.2 Score=64.51 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=34.4
Q ss_pred cCcHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001227 820 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 820 ~G~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~e 875 (1119)
+|.+..++.|.+.+.. ..+.+-+.|+|+.|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~-------------~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE-------------LRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH-------------CCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc-------------cCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 8899999999887752 012356899999999999999999863
No 321
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.98 E-value=0.054 Score=54.93 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
++.-|+|.|++|+|||++++.++..+ +.+++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 34569999999999999999999887 455655654
No 322
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.97 E-value=0.13 Score=51.80 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=17.1
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKA 871 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArA 871 (1119)
.-+.|.||+|+|||||+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4589999999999999994
No 323
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.91 E-value=0.044 Score=57.06 Aligned_cols=30 Identities=37% Similarity=0.469 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
.-|.|.|++|+|||++++.++. +|++++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4689999999999999999998 88776654
No 324
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.88 E-value=0.21 Score=55.32 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 886 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s 886 (1119)
++.-++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 44679999999999999999998654 5566666654
No 325
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.83 E-value=0.048 Score=57.78 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
+..|.|.|++|+|||++++.++..+|++++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3569999999999999999999999987764
No 326
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.77 E-value=0.045 Score=56.85 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
..|.|.|++|+|||++++.++..+|++++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4699999999999999999999999887654
No 327
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.72 E-value=0.039 Score=61.89 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=30.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 887 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~ 887 (1119)
++-++|.||+|+|||+||..+|+.++..++.++.-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 356899999999999999999999998888776544
No 328
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.63 E-value=0.16 Score=57.64 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
.+..-++|.|+||+|||+||..+|... +.++..++..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 344559999999999999999998764 6777777753
No 329
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.60 E-value=0.2 Score=51.97 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=34.6
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHH-HHHHHHH
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTML-AKAVATE 875 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l--~~P~~gILL~GPpGTGKT~L-ArAIA~e 875 (1119)
..+|++++-.+.+.+.+.+.- +..+..+....+ ....+.+++.+|+|+|||.. +-.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 457888887788877776642 111111111000 01125799999999999986 3334443
No 330
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.57 E-value=0.05 Score=61.32 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=45.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcccc-----c---cccchHHHHHHHHHHHHhcCCeEEEEcccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITS-----K---WFGEGEKYVKAVFSLASKIAPSVVFVDEVD 921 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~s~L~s-----~---~~G~~e~~I~~lF~~A~k~~PsILfIDEID 921 (1119)
..++|.||+|+|||||+++|+.... .-.+.++...... . ++.......+..+..|-...|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 4699999999999999999998763 2345554332110 1 110012234455666777889999999984
No 331
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.54 E-value=0.23 Score=51.99 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=32.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHH
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAK 870 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l--~~P~~gILL~GPpGTGKT~LAr 870 (1119)
..+|++++-.+.+.+.|.+.- +..+..+....+ ....+.+++.+|+|+|||..+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 356888887777777776531 111111111000 0112579999999999998543
No 332
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.51 E-value=0.041 Score=60.14 Aligned_cols=30 Identities=40% Similarity=0.546 Sum_probs=25.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-GANFIN 882 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-g~~fi~ 882 (1119)
.-|+|.|+||+|||++|+.++..+ ++.++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 468999999999999999999974 655553
No 333
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.49 E-value=0.041 Score=56.93 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
++.-++|.||||+|||++++.++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345699999999999999999999884
No 334
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.49 E-value=0.094 Score=63.78 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=34.4
Q ss_pred hhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 001227 329 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 389 (1119)
Q Consensus 329 se~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~ 389 (1119)
.+..|..|..+.+-.-. +.... .--.....|||.||||| -..+||||+|+.++..
T Consensus 300 ~e~vk~al~~~l~~g~~-~~~~~---~~~r~~~~vLL~GppGt--GKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 300 HWELKEALALALFGGVP-KVLED---TRIRGDIHILIIGDPGT--AKSQMLQFISRVAPRA 354 (595)
T ss_dssp CHHHHHHHTTTTTCCCC-EETTT---TEECCSCCEEEEESSCC--THHHHHHSSSTTCSCE
T ss_pred hHHHHHHHHHHHhCCCc-ccccC---CCcCCCcceEEECCCch--HHHHHHHHHHHhCCCc
Confidence 36677777655542211 11111 01112236999999999 7999999999988654
No 335
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.36 E-value=0.16 Score=52.77 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=41.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC--------ccccccccch-----HHHHHHHHHHHHhcCCeEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS--------SITSKWFGEG-----EKYVKAVFSLASKIAPSVVF 916 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s--------~L~s~~~G~~-----e~~I~~lF~~A~k~~PsILf 916 (1119)
.=.+++||.|+|||+.+-.+++.+ +..++.+... .+.+. .|.. -.....++..+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 458999999999999888887765 6666555421 01111 1100 0001244444432 347999
Q ss_pred Ecccccc
Q 001227 917 VDEVDSM 923 (1119)
Q Consensus 917 IDEID~L 923 (1119)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999875
No 336
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.27 E-value=0.27 Score=61.65 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=35.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCCh--hhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~p--elf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~e 875 (1119)
.+|++++-.....+.+.+.-..|.... .+... ......+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~---l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL---YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH---HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH---HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356666666666666665544443221 11110 111246999999999999977777544
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.26 E-value=0.031 Score=57.70 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=25.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA-GANFIN 882 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el-g~~fi~ 882 (1119)
..-+.|.|++|+|||++++.++..+ ++.++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 3458899999999999999999877 555444
No 338
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.25 E-value=0.042 Score=62.35 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~ 885 (1119)
.-|+|.||+|+|||+||..||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 368999999999999999999999977666654
No 339
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.24 E-value=0.063 Score=58.88 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
+.-|.|.|++|+||||+|+.++ .+|++++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3569999999999999999999 688877554
No 340
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.20 E-value=0.34 Score=59.28 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHhcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHH
Q 001227 822 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK 898 (1119)
Q Consensus 822 ~e~ik~~L~e~v~~pL~~pelf~k~~l~~P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~~~G~~e~ 898 (1119)
.+.+++++...+.. + .-.||+||||||||+++..+...+ +.++..+..+ ..
T Consensus 191 N~~Q~~AV~~al~~--------------~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T----------N~ 244 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------K--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS----------NI 244 (646)
T ss_dssp CHHHHHHHHHHHHC--------------S--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS----------HH
T ss_pred CHHHHHHHHHHhcC--------------C--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc----------hH
Confidence 46777777665531 1 147999999999998555544333 5555555433 23
Q ss_pred HHHHHHHHHHhcCCeEEEE
Q 001227 899 YVKAVFSLASKIAPSVVFV 917 (1119)
Q Consensus 899 ~I~~lF~~A~k~~PsILfI 917 (1119)
++..+.+........++=+
T Consensus 245 AvD~i~erL~~~~~~ilRl 263 (646)
T 4b3f_X 245 AVDNLVERLALCKQRILRL 263 (646)
T ss_dssp HHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHhcCCceEEe
Confidence 4555555554444445443
No 341
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.12 E-value=0.2 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=18.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
+++++.+|+|+|||..+-..+.+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 57999999999999976655443
No 342
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.12 E-value=0.066 Score=55.64 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=28.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 886 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s 886 (1119)
+.-|+|.|++|+|||++++.++..+ |.+++.++..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 3568999999999999999999876 4667777643
No 343
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.10 E-value=0.069 Score=61.96 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
+.-|+|.|+||+|||++|+.++..+++.++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4568999999999999999999998876554
No 344
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.01 E-value=0.061 Score=56.18 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
-|.|.|++|||||++++.+|+.+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999999884
No 345
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.98 E-value=0.58 Score=48.29 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=32.6
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHHHH
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l--~~P~~gILL~GPpGTGKT~LArAIA~e 875 (1119)
.+|++++-.+.+.+.|.+.- +..+..+....+ ....+.+++.+|+|+|||..+-..+..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 45777776677777766521 111111111000 001246999999999999866554433
No 346
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.94 E-value=0.064 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGA 878 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~ 878 (1119)
-+.|.||+|+||||+++.|+...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 347
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.90 E-value=0.092 Score=59.55 Aligned_cols=68 Identities=31% Similarity=0.439 Sum_probs=52.8
Q ss_pred hhHHHHHHHhhhhhccccccccc---------------cCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001227 330 DITKNVLIASTYVHLKCNNFAKY---------------ASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 394 (1119)
Q Consensus 330 e~tk~~L~~~~~~hL~~~~~~k~---------------~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a~LL~lD 394 (1119)
++.|..|..+.+.|+++.....+ ........+.|||.||+|| ...+|||+||+.++.++..+|
T Consensus 27 ~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~Gt--GKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 27 EQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGS--GKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTS--SHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCC--CHHHHHHHHHHHhCCCEEEec
Confidence 88899999998888776442110 0123445678999999999 799999999999999999999
Q ss_pred ccCCC
Q 001227 395 SLLLP 399 (1119)
Q Consensus 395 s~~~~ 399 (1119)
...+.
T Consensus 105 ~~~~~ 109 (376)
T 1um8_A 105 ATSLT 109 (376)
T ss_dssp GGGCC
T ss_pred chhhh
Confidence 77653
No 348
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.83 E-value=0.11 Score=60.56 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=26.7
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc-----CCeEEEEe
Q 001227 360 CPRILLSGPAGSEIYQETLAKALAKHF-----SARLLIVD 394 (1119)
Q Consensus 360 s~rILLsgp~GsE~Yqe~LakALA~~f-----~a~LL~lD 394 (1119)
.+-+||.||+|+ ...+||+|+|++. +.+++.++
T Consensus 130 ~~~lll~Gp~G~--GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGL--GKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSS--SHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCC--CHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 467999999999 7999999999987 55554444
No 349
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.71 E-value=0.057 Score=60.69 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 886 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s 886 (1119)
+-|+|.||+|+|||+||..+|+.++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3588999999999999999999998777766643
No 350
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=92.69 E-value=0.31 Score=54.40 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=55.0
Q ss_pred eeeecceeeeeccccc---ceeecCCCCcccceEEeEee-------cCCcceeEEEEecCcceEEEcCeecCCCceEEee
Q 001227 15 LSMTGAVFTVGHNRQC---DLYLKDPSISKNLCRLRRIE-------NGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLR 84 (1119)
Q Consensus 15 ~~~~~~~~tvg~~~~~---~~~l~d~~~~~~~c~l~~~~-------~~~~~~~~le~~~~~~~v~vng~~~~~~~~~~l~ 84 (1119)
+.+....|+||+...+ ++.+.|+++|-.|+.|+--. ..+.+...++=.|++==.+|||+.+... +..|.
T Consensus 16 ~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~~~-~~~L~ 94 (325)
T 3huf_A 16 RILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVGQN-GDSYK 94 (325)
T ss_dssp EEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECCTT-CEEEC
T ss_pred EEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECCCc-eeeec
Confidence 3344555999997653 35899999999999997421 1112223444445442289999999654 56775
Q ss_pred -cCCeEEecCCCC
Q 001227 85 -GGDELVFSPSGK 96 (1119)
Q Consensus 85 -~gde~vf~~~~~ 96 (1119)
.||+|.||.+-.
T Consensus 95 ~dgd~I~fG~~~~ 107 (325)
T 3huf_A 95 EKDLKIQLGKCPF 107 (325)
T ss_dssp SSEEEEEETTCSS
T ss_pred CCCCEEEecCCcc
Confidence 699999997754
No 351
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.57 E-value=0.079 Score=63.29 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=44.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCc-ccc---cc--------ccchHHHHHHHHHHHHhcCCeEEEEc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITS---KW--------FGEGEKYVKAVFSLASKIAPSVVFVD 918 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~s~-L~s---~~--------~G~~e~~I~~lF~~A~k~~PsILfID 918 (1119)
..++|.||+|+||||++++++.... ...+.+.... +.- .+ .+.....+......+.+..|.+|+++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999988763 3455554432 210 00 01111123445556667889999999
Q ss_pred ccc
Q 001227 919 EVD 921 (1119)
Q Consensus 919 EID 921 (1119)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 983
No 352
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.54 E-value=0.073 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
+.-+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999999876
No 353
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.51 E-value=0.074 Score=61.67 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~~ 885 (1119)
+-|+|.||+|+|||+||..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 458899999999999999999999877766543
No 354
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.44 E-value=0.078 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
.-+.|.||+|+|||+|++.|+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998763
No 355
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.43 E-value=0.5 Score=49.85 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.3
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVA 873 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA 873 (1119)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 479999999999998666553
No 356
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.39 E-value=0.069 Score=55.60 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
++.-+.|.||+|+|||++++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345589999999999999999998874
No 357
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.38 E-value=0.32 Score=49.54 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAK 870 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LAr 870 (1119)
+++++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997444
No 358
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.30 E-value=0.1 Score=54.80 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHH-HHHHHHHHHh--CCcEEEEecC
Q 001227 853 KGILLFGPPGTGKT-MLAKAVATEA--GANFINISMS 886 (1119)
Q Consensus 853 ~gILL~GPpGTGKT-~LArAIA~el--g~~fi~V~~s 886 (1119)
.=.+++||.|+||| .|.+++.+.. +..++.+...
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 44899999999999 7999886654 7778777643
No 359
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.27 E-value=0.083 Score=54.50 Aligned_cols=26 Identities=38% Similarity=0.370 Sum_probs=23.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
+.-+.|.||+|+|||||++.|+..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999999887
No 360
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.26 E-value=1.1 Score=53.41 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
++.-++|.||+|+|||||++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34568999999999999999999765
No 361
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.23 E-value=0.19 Score=60.17 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 887 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~ 887 (1119)
.-|+|.|.||+|||++|+.+|..+ +.....++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 458999999999999999999988 44555556543
No 362
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.12 E-value=0.094 Score=54.43 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGA 878 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~ 878 (1119)
.|+|.||+|+|||+|++++..+..-
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 4999999999999999999888643
No 363
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.03 E-value=0.32 Score=57.98 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-------------------cc-cchHHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-------------------WF-GEGEKYVKAVFSLA 907 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~-------------------~~-G~~e~~I~~lF~~A 907 (1119)
++..|+|.|++|+|||+++..+|..+ |..+..+++...... .. ......+...+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998766 677766665221100 00 11122233445555
Q ss_pred HhcCCeEEEEcccccc
Q 001227 908 SKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 908 ~k~~PsILfIDEID~L 923 (1119)
.+....++|||-.-.+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 4445579999987654
No 364
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.97 E-value=0.098 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.-+.|.||+|+|||||++.|+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999999875
No 365
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.97 E-value=0.061 Score=56.75 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=26.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
.++|+|.||+|+|||+||.++++... .++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46799999999999999999998865 555544
No 366
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.64 E-value=0.17 Score=52.23 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
+.-+.|.|++|+|||++++.++..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3568999999999999999999875 6666666543
No 367
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.62 E-value=0.41 Score=55.99 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=48.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCcccccc----------------c----cchHHHHHHHHH
Q 001227 850 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKW----------------F----GEGEKYVKAVFS 905 (1119)
Q Consensus 850 ~P~~gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s~L~s~~----------------~----G~~e~~I~~lF~ 905 (1119)
.+++.|++.|++|+|||+++..+|..+ |..+..+++....... . ......+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345779999999999999999998665 7778877775321110 0 011233355666
Q ss_pred HHHhcCCeEEEEcccccc
Q 001227 906 LASKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 906 ~A~k~~PsILfIDEID~L 923 (1119)
.+....-.+++||=.-.+
T Consensus 178 ~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHTTCSEEEEECCCCC
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 665445579999886433
No 368
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.59 E-value=0.45 Score=50.51 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 855 ILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
.+++||.|+|||+.+-.++..+ +..++.+..
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 5789999999999888776655 677776653
No 369
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.42 E-value=0.1 Score=54.13 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
+..-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 335688999999999999999998874
No 370
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.37 E-value=0.68 Score=51.32 Aligned_cols=72 Identities=19% Similarity=0.055 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---------------c----c-cchHHHHHHHHHHHH
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---------------W----F-GEGEKYVKAVFSLAS 908 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~---------------~----~-G~~e~~I~~lF~~A~ 908 (1119)
+.-+++.|++|+|||+++..+|..+ +..+..+++...... . . ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999998766 667766665421110 0 0 112233345566665
Q ss_pred hcCCeEEEEcccccc
Q 001227 909 KIAPSVVFVDEVDSM 923 (1119)
Q Consensus 909 k~~PsILfIDEID~L 923 (1119)
+....+|+||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 455679999986543
No 371
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.37 E-value=0.11 Score=53.88 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
.+.+.|.||+|+|||+|++.|+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35699999999999999999988763
No 372
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.36 E-value=0.46 Score=53.52 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
++.-+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44569999999999999999998766
No 373
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=91.34 E-value=0.36 Score=50.03 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAK 870 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LAr 870 (1119)
+.+++.+|+|+|||..+.
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998643
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.29 E-value=0.06 Score=55.41 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg 877 (1119)
-|.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 375
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.15 E-value=0.15 Score=62.22 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
.-|+|+|.+|+|||++|+++++.+ |.+++.++.
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 569999999999999999999998 999998874
No 376
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.01 E-value=0.12 Score=53.40 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001227 855 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 887 (1119)
Q Consensus 855 ILL~GPpGTGKT~LArAIA~elg~~fi~V~~s~ 887 (1119)
+|++|++|+|||++|..++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999987 88888888754
No 377
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.98 E-value=0.13 Score=52.47 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg 877 (1119)
-+.|.||+|+|||||++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998763
No 378
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.96 E-value=0.49 Score=49.25 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAK 870 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LAr 870 (1119)
+.+++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999997543
No 379
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.93 E-value=0.14 Score=54.57 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFIN 882 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 882 (1119)
.-|.|.|++|||||++++.+|+.+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 458999999999999999999999999865
No 380
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.92 E-value=2.2 Score=47.78 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
++.-++|.|++|+|||+++..+|..+ +..+..+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45679999999999999999998765 5666666653
No 381
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.91 E-value=0.61 Score=51.55 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---------------cc-----cchHHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---------------WF-----GEGEKYVKAVFSLA 907 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~---------------~~-----G~~e~~I~~lF~~A 907 (1119)
++.-+.+.|++|+|||+++..+|..+ +..+..+++...... .+ .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568889999999999999998765 556665554211000 00 01122334556666
Q ss_pred HhcCCeEEEEcccccc
Q 001227 908 SKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 908 ~k~~PsILfIDEID~L 923 (1119)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5567789999998443
No 382
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=90.82 E-value=0.52 Score=60.07 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVAT 874 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~ 874 (1119)
.-++|.||.|+|||++.+.++.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 4589999999999999998863
No 383
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.74 E-value=0.17 Score=54.34 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINI 883 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V 883 (1119)
..+=|.||||+|||++|+.|+..++++++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3578999999999999999999999887654
No 384
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.74 E-value=1 Score=53.58 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=49.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-------------------ccc---------chHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-------------------WFG---------EGEKY 899 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~-------------------~~G---------~~e~~ 899 (1119)
+..-++|.||+|+|||+|++.++... |-+++.+...+-... ... .....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~ 359 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH 359 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHH
Confidence 33568999999999999999998654 445555554321000 000 22345
Q ss_pred HHHHHHHHHhcCCeEEEEccccccc
Q 001227 900 VKAVFSLASKIAPSVVFVDEVDSML 924 (1119)
Q Consensus 900 I~~lF~~A~k~~PsILfIDEID~L~ 924 (1119)
.+.++..+....|.+|+||=+..|.
T Consensus 360 q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 360 LQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHhhCCCEEEEcChHHHH
Confidence 5666777777889999999766663
No 385
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.68 E-value=0.44 Score=50.28 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=31.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHH
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAK 870 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l--~~P~~gILL~GPpGTGKT~LAr 870 (1119)
..+|++++-.+.+.+.+.+. .+..+..+....+ ....+.+++.+|+|+|||..+.
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQ---NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 46788877677776666552 1111111111000 0012579999999999998643
No 386
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.57 E-value=0.2 Score=59.15 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 369999999999999999887654
No 387
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.55 E-value=0.31 Score=56.98 Aligned_cols=36 Identities=33% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 886 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s 886 (1119)
++..|+|.|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34679999999999999999998776 5667767654
No 388
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.44 E-value=0.56 Score=50.06 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=29.0
Q ss_pred CCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHH
Q 001227 814 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAK 870 (1119)
Q Consensus 814 ~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l--~~P~~gILL~GPpGTGKT~LAr 870 (1119)
.+|++++-.+.+.+.|.+.- +..+..+....+ ....+.+++.+|+|+|||..+-
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLG---WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 45777766666666665421 111111111000 0112579999999999998543
No 389
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.40 E-value=1.2 Score=51.98 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=45.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---------------cc--c---chHHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---------------WF--G---EGEKYVKAVFSLA 907 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~s~L~s~---------------~~--G---~~e~~I~~lF~~A 907 (1119)
++..+++.|++|+|||+++..+|..+ +..+..+++...... .+ + .........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998776 556666665321100 00 0 1122334556666
Q ss_pred HhcCCeEEEEcccccc
Q 001227 908 SKIAPSVVFVDEVDSM 923 (1119)
Q Consensus 908 ~k~~PsILfIDEID~L 923 (1119)
+...-.+++||=.-.+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 4445578999866443
No 390
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.12 E-value=1.3 Score=52.79 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCChHHHHHHHH--HHHh--CCcEEEEec
Q 001227 851 PCKGILLFGPPGTGKTMLAKAV--ATEA--GANFINISM 885 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAI--A~el--g~~fi~V~~ 885 (1119)
+..-++|.||+|+|||+|++.+ +... +...+.++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3456999999999999999994 3322 444555554
No 391
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.88 E-value=0.19 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
+-+.|.||+|+|||+|+++|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998764
No 392
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.78 E-value=0.22 Score=52.95 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINI 883 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg--~~fi~V 883 (1119)
..-|.|.||+|+||||+++.++..++ .+++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 34589999999999999999999986 455543
No 393
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.67 E-value=0.25 Score=50.39 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeecc
Q 001227 570 KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 613 (1119)
Q Consensus 570 k~~p~Ilf~~die~~l~~~~~~~~~l~~~L~~L~g~vvvIgs~~ 613 (1119)
...|.||+|||++.+ ..+..+.|...|+..+.++++|.+++
T Consensus 124 ~~~~~vlviDe~~~l---~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 124 RGRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSSSEEEEEETGGGS---CHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred cCCceEEEEECcccc---cHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 357899999999994 34556677778888888888888887
No 394
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.61 E-value=1.1 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=18.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
+++++.+|+|+|||..+-..+.+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 47999999999999876655543
No 395
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.59 E-value=1.1 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..|+|.|++|+|||+|+.++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 57999999999999999999753
No 396
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.27 E-value=0.13 Score=56.71 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT 889 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~~s~L~ 889 (1119)
.-|.|.||+|+||||+|+.++..++ ..+..+++..+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3589999999999999999998775 445556655543
No 397
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.23 E-value=0.26 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=22.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.-+.|.||.|+|||+|++.|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999999987
No 398
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.15 E-value=0.73 Score=53.30 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=25.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~V~ 884 (1119)
..++|.||+|+|||+|++.|++.. ++.++.+-
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~l 211 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 211 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEE
Confidence 579999999999999999998764 44455443
No 399
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.14 E-value=0.84 Score=51.57 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINIS 884 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~ 884 (1119)
...|.|.|+||+|||+|+.+++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3579999999999999999998775 55554444
No 400
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.14 E-value=0.98 Score=47.20 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=30.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHH
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLA 869 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l--~~P~~gILL~GPpGTGKT~LA 869 (1119)
..+|++++-.+.+.+.|.+.= +..+.-+....+ ....+.+++.+|+|+|||..+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAG---FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 356888776677777765521 111111111000 011257999999999999863
No 401
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.09 E-value=0.38 Score=54.66 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=43.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecC-cccc----c---ccc-c-------hHHHHHHHHHHHHhcCCeE
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS----K---WFG-E-------GEKYVKAVFSLASKIAPSV 914 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~V~~s-~L~s----~---~~G-~-------~e~~I~~lF~~A~k~~PsI 914 (1119)
..++|.||+|+|||||+++|+.... .-.+.++.. ++.. . ++- . ....++..+..+....|.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 4699999999999999999998763 234444421 1110 0 110 0 1112455666666778999
Q ss_pred EEEcccc
Q 001227 915 VFVDEVD 921 (1119)
Q Consensus 915 LfIDEID 921 (1119)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999984
No 402
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.98 E-value=0.23 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.-+.|.||+|+|||+|++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999999876
No 403
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.97 E-value=0.43 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
++.-+.|.||+|+||||+++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999999776
No 404
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.93 E-value=0.18 Score=55.85 Aligned_cols=27 Identities=22% Similarity=0.264 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
++.-|.|.||+|+|||||++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345689999999999999999998875
No 405
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.93 E-value=0.25 Score=51.08 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
.-+.|.||+|+|||+|++.|+....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998774
No 406
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.93 E-value=0.26 Score=52.41 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGAN 879 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~ 879 (1119)
.-+-|.||+|+|||||++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 458899999999999999999988754
No 407
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.91 E-value=0.3 Score=50.49 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAGANF 880 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg~~f 880 (1119)
..++||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 468999999999999999999874 5443
No 408
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.76 E-value=2.7 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.0
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVA 873 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA 873 (1119)
+++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 579999999999998664443
No 409
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=88.68 E-value=1.7 Score=53.50 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHH-HHHHH---hCCcEEEEec
Q 001227 852 CKGILLFGPPGTGKTMLAK-AVATE---AGANFINISM 885 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LAr-AIA~e---lg~~fi~V~~ 885 (1119)
..++++.||+|+|||..+. ++... .+...+.+.+
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 3689999999999998773 33322 2455555443
No 410
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.58 E-value=0.45 Score=47.68 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
+...|++.|++|+|||+|+.++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999997643
No 411
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.51 E-value=0.27 Score=52.00 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
+..-+.|.||+|+|||||++.|+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 334589999999999999999998764
No 412
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.49 E-value=0.48 Score=48.44 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~ 884 (1119)
+-+.|.|++|+|||+|+..++..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468999999999999999998775 55555444
No 413
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=88.46 E-value=1.6 Score=48.92 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=31.2
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHH
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAV 872 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l--~~P~~gILL~GPpGTGKT~LArAI 872 (1119)
..+|++++-.+.+.+.|.+.= +..+..+....+ ....+++++.+|+|+|||..+-..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAG---FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHH
Confidence 356888777777777666521 111111110000 001246999999999999865443
No 414
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=88.46 E-value=1.6 Score=46.59 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVAT 874 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~ 874 (1119)
+...|+|.|.+|+|||+|+.+|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 345799999999999999999864
No 415
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.45 E-value=0.92 Score=57.96 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVA 873 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA 873 (1119)
.-++|+||.|+|||++.+.++
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999984
No 416
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.40 E-value=0.32 Score=51.49 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-GA 878 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-g~ 878 (1119)
.-|.|.|++|+|||++++.+++.+ +.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 468999999999999999999998 44
No 417
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.29 E-value=0.13 Score=55.30 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcE
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA-GANF 880 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el-g~~f 880 (1119)
++.-|.|.|++|+||||+++.|++.+ +..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34569999999999999999999998 4433
No 418
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=88.27 E-value=0.33 Score=58.81 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=30.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS 887 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg----~~fi~V~~s~ 887 (1119)
+.-|+|.|++|+|||++|+++++.++ .+++.++...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 35689999999999999999999885 7788887433
No 419
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.11 E-value=1.2 Score=50.26 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=25.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA----GANFINISMS 886 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el----g~~fi~V~~s 886 (1119)
+++|.+|+|+|||..+-+++... +..++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 79999999999999887776554 5566555543
No 420
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.05 E-value=2.1 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..-++|+||.|+|||++.+.|+..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 346899999999999999998754
No 421
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=87.86 E-value=0.35 Score=56.11 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 886 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~~s 886 (1119)
++||.+|+|+|||..+-.++...+.+++.+-+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888887777776654
No 422
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.71 E-value=0.49 Score=49.86 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
.-|.|.|++|+|||++++.++..+ +.+++...-
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~ 42 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC
Confidence 458899999999999999999887 566665543
No 423
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.62 E-value=0.34 Score=54.13 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
+...+.|.||+|+|||+|++.|+..+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 445689999999999999999998873
No 424
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.53 E-value=0.47 Score=48.38 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=47.8
Q ss_pred HHHHHhcccCCCccccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHH
Q 001227 304 KDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALA 383 (1119)
Q Consensus 304 ~~~l~~~i~~~~~~~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA 383 (1119)
+..++..-++.+--..|||+|-+. +.+.+.++..+.. .++. +... ...+.|||.||+|| ...+||+|+|
T Consensus 7 ~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~-~~~~-----~~~~--~~~~~~~l~G~~Gt--GKT~la~~i~ 75 (202)
T 2w58_A 7 ESLIQSMFMPREILRASLSDVDLN-DDGRIKAIRFAER-FVAE-----YEPG--KKMKGLYLHGSFGV--GKTYLLAAIA 75 (202)
T ss_dssp HHHEEEESSCGGGGCCCTTSSCCS-SHHHHHHHHHHHH-HHHH-----CCSS--CCCCEEEEECSTTS--SHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHcCCHhhccCC-ChhHHHHHHHHHH-HHHH-----hhhc--cCCCeEEEECCCCC--CHHHHHHHHH
Confidence 344555666665567799998654 2233333332211 1111 1000 01278999999999 7999999999
Q ss_pred hhc---CCeEEEEe
Q 001227 384 KHF---SARLLIVD 394 (1119)
Q Consensus 384 ~~f---~a~LL~lD 394 (1119)
+++ +.+.+.++
T Consensus 76 ~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 76 NELAKRNVSSLIVY 89 (202)
T ss_dssp HHHHTTTCCEEEEE
T ss_pred HHHHHcCCeEEEEE
Confidence 988 45555554
No 425
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.51 E-value=2.1 Score=52.70 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=17.2
Q ss_pred CceEEEEcCCCChHHHHHHH
Q 001227 852 CKGILLFGPPGTGKTMLAKA 871 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArA 871 (1119)
..++++.||+|+|||+.+..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHH
Confidence 36899999999999998743
No 426
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.46 E-value=0.31 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg 877 (1119)
-.+|+||.|+|||+|++||+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999998775
No 427
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.39 E-value=0.71 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 428
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=87.24 E-value=0.59 Score=53.19 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.0
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAV 872 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAI 872 (1119)
+.+++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999944433
No 429
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.23 E-value=0.22 Score=52.37 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=15.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH-HHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVA-TEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA-~el 876 (1119)
.-+.|.||+|+|||++++.|+ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 458899999999999999999 765
No 430
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.23 E-value=0.85 Score=45.36 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~e 875 (1119)
...|.|.|++|+|||+|..+++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999864
No 431
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=86.98 E-value=2.9 Score=47.09 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHH
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAV 872 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l--~~P~~gILL~GPpGTGKT~LArAI 872 (1119)
..+|++++-.+.+.+.|.+.= +..+..+....+ ....+.+++.+|+|+|||..+-..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYG---FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 346888877777777776531 111111111000 001256999999999999765443
No 432
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.81 E-value=0.72 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
++.-+.|.||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44568999999999999999999876
No 433
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=86.76 E-value=1.1 Score=50.36 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=32.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHhcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHH
Q 001227 812 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKA 871 (1119)
Q Consensus 812 ~~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k~~l--~~P~~gILL~GPpGTGKT~LArA 871 (1119)
...+|+++.-...+.+.|.+.- +..+..+....+ ....+.+++.+|+|+|||..+-.
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred hhcCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 3457888777777777776521 111111111000 01124699999999999986443
No 434
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.52 E-value=0.43 Score=53.14 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
+.-+.|.||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999999776
No 435
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.52 E-value=3 Score=46.14 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhccC-hhhHHHHHHHHhcC-CCCEEEEeecc
Q 001227 557 AINELFEVALNESKSSPLIVFVKDIEKSLTGN-NDAYGALKSKLENL-PSNVVVIGSHT 613 (1119)
Q Consensus 557 ~~~~l~ev~~~esk~~p~Ilf~~die~~l~~~-~~~~~~l~~~L~~L-~g~vvvIgs~~ 613 (1119)
.++.+++.+.. ...|.||+|||++.+.... .+....+...++.+ ..++.+|++++
T Consensus 115 ~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 115 LYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 45566666654 2359999999999966543 66666777777665 44888888888
No 436
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=86.36 E-value=0.98 Score=54.21 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.++||.+|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 578999999999999887776554
No 437
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=86.27 E-value=2.5 Score=46.50 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=36.8
Q ss_pred ccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCC
Q 001227 318 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 388 (1119)
Q Consensus 318 ~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~a 388 (1119)
..+|++|.-. ++.+..+..+.... ..+.|||.||+|| .+.+||||+|+.++-
T Consensus 20 ~~~f~~i~G~--~~~~~~l~~~~~~~---------------~~~~vLl~G~~Gt--GKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAIVGQ--EDMKLALLLTAVDP---------------GIGGVLVFGDRGT--GKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGSCSC--HHHHHHHHHHHHCG---------------GGCCEEEECCGGG--CTTHHHHHHHHHSCC
T ss_pred CCCchhccCh--HHHHHHHHHHhhCC---------------CCceEEEECCCCc--cHHHHHHHHHHhCcc
Confidence 3578886443 66666655544321 1234999999999 799999999999864
No 438
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.17 E-value=0.38 Score=53.32 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
.-+-|.||+|+|||||++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999998775
No 439
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=86.13 E-value=0.25 Score=58.03 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS 884 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg---~~fi~V~ 884 (1119)
+..|+|.|.||+|||++++.++..++ .+...++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 35699999999999999999999874 3444444
No 440
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=86.08 E-value=0.45 Score=53.10 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
++.-+-|.||+|+|||||++.|+..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 33458899999999999999999876
No 441
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.92 E-value=0.45 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..|++.|++|+|||+|+.+++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999764
No 442
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.88 E-value=0.53 Score=45.90 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=32.1
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhc---CCeEEEEeccCCCC
Q 001227 359 MCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLPG 400 (1119)
Q Consensus 359 ~s~rILLsgp~GsE~Yqe~LakALA~~f---~a~LL~lDs~~~~g 400 (1119)
...-|||.||+|| -+++||||++++. +.+++ +|...+..
T Consensus 23 ~~~~vll~G~~Gt--GKt~lA~~i~~~~~~~~~~~v-~~~~~~~~ 64 (145)
T 3n70_A 23 TDIAVWLYGAPGT--GRMTGARYLHQFGRNAQGEFV-YRELTPDN 64 (145)
T ss_dssp CCSCEEEESSTTS--SHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred CCCCEEEECCCCC--CHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence 4456999999999 6999999999987 77877 88765544
No 443
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=85.80 E-value=0.55 Score=45.62 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~e 875 (1119)
+...|++.|++|+|||+|+.++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999753
No 444
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.79 E-value=0.44 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.-+.|.|++|+|||+|++.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998764
No 445
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.77 E-value=0.5 Score=48.50 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
...|+|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998754
No 446
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.56 E-value=1 Score=48.14 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=38.8
Q ss_pred ccccccccccchhhHHHHHHHhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcC---CeEEEEe
Q 001227 318 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS---ARLLIVD 394 (1119)
Q Consensus 318 ~vsfd~fPyylse~tk~~L~~~~~~hL~~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LakALA~~f~---a~LL~lD 394 (1119)
+.||++|-. -|+..+.++-.+..+ .....-|||.||+|| -+++||||+|++.. .+++.++
T Consensus 2 ~~~f~~~ig-~~~~~~~~~~~~~~~--------------~~~~~~vll~G~~Gt--GKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 2 AEYKDNLLG-EANSFLEVLEQVSHL--------------APLDKPVLIIGERGT--GKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp --------C-CCHHHHHHHHHHHHH--------------TTSCSCEEEECCTTS--CHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred Cccccccee-CCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCC--cHHHHHHHHHHhcCccCCCeEEEe
Confidence 357888743 455555554333321 012367999999999 69999999999875 6788888
Q ss_pred ccCC
Q 001227 395 SLLL 398 (1119)
Q Consensus 395 s~~~ 398 (1119)
.+.+
T Consensus 65 ~~~~ 68 (265)
T 2bjv_A 65 CAAL 68 (265)
T ss_dssp GGGS
T ss_pred cCCC
Confidence 7654
No 447
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.37 E-value=0.64 Score=52.23 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
.+.-+-|.||+|+||||+++.|+..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345689999999999999999998875
No 448
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=85.35 E-value=0.84 Score=47.13 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
...|+|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999875
No 449
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=85.27 E-value=3 Score=41.67 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..|+|.|++|+|||+|+.++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999854
No 450
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=85.26 E-value=0.41 Score=58.37 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el 876 (1119)
..+|.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999877776543
No 451
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=85.25 E-value=0.57 Score=48.21 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
..++|.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998763
No 452
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.20 E-value=0.71 Score=49.28 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA-------GANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el-------g~~fi~V~ 884 (1119)
.-|.|.|++|+|||++++.+++.+ |.+++...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 458999999999999999999877 66665544
No 453
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.12 E-value=0.43 Score=50.93 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..-+.|.||+|+|||||++.|+...
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458999999999999999998654
No 454
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=85.08 E-value=0.95 Score=52.64 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCCcccccCcHHHHHHHHHHHhcccCChhhhhc----CCCCCCCceEEEEcCCCChHHHHH
Q 001227 813 GVTFDDIGALENVKDTLKELVMLPLQRPELFCK----GQLTKPCKGILLFGPPGTGKTMLA 869 (1119)
Q Consensus 813 ~~sfddI~G~e~ik~~L~e~v~~pL~~pelf~k----~~l~~P~~gILL~GPpGTGKT~LA 869 (1119)
..+|+++.-.+.+.+.|.+. -+..|..+.. .-+..+.+.+|+.||+|+|||..+
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 34677777777777666542 1111111110 011123468999999999999863
No 455
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=85.08 E-value=0.44 Score=50.40 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 854 GILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
.|-|+|..|||||++++.++. +|++++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 588999999999999999988 999987655
No 456
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.04 E-value=1.5 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..-+.|.||||+|||+|.++++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998765
No 457
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.00 E-value=0.44 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
+..-+.|.||+|+|||||++.|+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998654
No 458
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=84.79 E-value=1 Score=47.75 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~fi~V~ 884 (1119)
.-|.|.|++|+|||++++.+++.++.+...+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ 37 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLK 37 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEEE
Confidence 46899999999999999999999987544443
No 459
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=84.60 E-value=0.76 Score=53.29 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHH-HHHHH---HhCCcEEEEec
Q 001227 853 KGILLFGPPGTGKTMLA-KAVAT---EAGANFINISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LA-rAIA~---elg~~fi~V~~ 885 (1119)
+.+|+.||+|+|||..+ .++.+ ..+...+.+.+
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 47999999999999965 43432 22444444443
No 460
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=84.60 E-value=1.1 Score=48.07 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAK 870 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LAr 870 (1119)
+.+|+.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998544
No 461
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=84.45 E-value=0.57 Score=45.26 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..|++.|++|+|||+|+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 462
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=84.40 E-value=0.41 Score=50.67 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.-+.|.||+|+|||||++.|+...
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998654
No 463
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.33 E-value=0.54 Score=50.45 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.-+.|.||+|+|||||.+.|+...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999765
No 464
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.31 E-value=0.55 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..|++.|++|+|||+|+.++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999864
No 465
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.24 E-value=0.54 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..+.|.|++|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 466
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=84.22 E-value=0.75 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVAT 874 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~ 874 (1119)
....|+|.|++|+|||+|+.++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346799999999999999999975
No 467
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=84.20 E-value=1.2 Score=47.97 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
+.|.|.|+||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999754
No 468
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=84.20 E-value=2.4 Score=47.60 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
...+.|.|+||+|||+++.+++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998664
No 469
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=84.16 E-value=0.5 Score=56.39 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=24.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGA 878 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~ 878 (1119)
..|+|.|.+|+|||++|+++|+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56999999999999999999999975
No 470
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=84.01 E-value=0.52 Score=47.74 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..+.|.|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 471
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=83.95 E-value=0.52 Score=50.51 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
+..-+.|.||+|+|||||++.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458999999999999999998654
No 472
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.90 E-value=0.59 Score=44.74 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..|++.|++|+|||+|+.+++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999998653
No 473
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=83.90 E-value=0.62 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..|++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998764
No 474
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.89 E-value=0.44 Score=48.58 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..+.|.|++|+|||+|++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998876
No 475
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=83.86 E-value=0.59 Score=52.44 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEAGANFI 881 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~elg~~fi 881 (1119)
...++||.|++|+|||++|.++... |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 3468999999999999999999774 55443
No 476
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.82 E-value=0.39 Score=50.46 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 001227 854 GILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~e 875 (1119)
-+.|.||+|+|||||++.|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 477
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=83.70 E-value=0.62 Score=52.75 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=23.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAGAN 879 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg~~ 879 (1119)
..+.|.||+|+|||||++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 569999999999999999999987654
No 478
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.58 E-value=0.98 Score=51.43 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
..++++.||+|+|||++++.++..+ +..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4589999999999999999997654 667777764
No 479
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.53 E-value=0.66 Score=44.81 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999997543
No 480
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=83.46 E-value=0.59 Score=56.85 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
+.++++|+||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999888776544
No 481
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=83.45 E-value=0.55 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEAG 877 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~elg 877 (1119)
.-+.|.||+|+|||||++.|+....
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999987653
No 482
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=83.43 E-value=2.8 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=18.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
+++|+.+|+|+|||..+-..+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46999999999999876655433
No 483
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=83.43 E-value=0.7 Score=45.94 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..|+|.|++|+|||+|+.+++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999863
No 484
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=83.41 E-value=0.48 Score=50.04 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.-+.|.||+|+|||||++.|+...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998654
No 485
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=83.25 E-value=0.63 Score=45.60 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~e 875 (1119)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999764
No 486
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.23 E-value=0.53 Score=56.76 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCc
Q 001227 852 CKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS 887 (1119)
Q Consensus 852 ~~gILL~GPpGTGKT~LArAIA~elg----~~fi~V~~s~ 887 (1119)
...+.|.|++|+|||||+++|+..++ ..+..++...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 35689999999999999999999884 3444455443
No 487
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=83.22 E-value=0.67 Score=50.48 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
.-+.|.||+|+|||||++.|+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999874
No 488
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=83.19 E-value=0.58 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
+..-+.|.||+|+|||||++.|+...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33468999999999999999998654
No 489
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=83.08 E-value=0.62 Score=50.15 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
.-+.|.||+|+|||||++.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999964
No 490
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=82.98 E-value=0.71 Score=44.69 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
..|++.|++|+|||+|+.++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998654
No 491
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=82.86 E-value=0.66 Score=45.24 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVAT 874 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~ 874 (1119)
..|+|.|++|+|||+|+.++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4699999999999999999864
No 492
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=82.81 E-value=0.72 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..|++.|++|+|||+|+.++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999754
No 493
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=82.81 E-value=0.56 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.-+.|.||.|+|||||.+.|+...
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999998765
No 494
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=82.79 E-value=0.61 Score=50.92 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001227 851 PCKGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 851 P~~gILL~GPpGTGKT~LArAIA~el 876 (1119)
+..-+.|.||+|+|||||++.|+...
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458899999999999999998765
No 495
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=82.77 E-value=0.67 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001227 854 GILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 854 gILL~GPpGTGKT~LArAIA~el 876 (1119)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 496
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.74 E-value=0.53 Score=50.38 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.-+.|.||+|+|||||.+.|+...
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999998755
No 497
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=82.70 E-value=0.65 Score=49.84 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=25.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCc-EEEEe
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GAN-FINIS 884 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~-fi~V~ 884 (1119)
.-|.|.|++|+|||++++.++..+ +.+ ++...
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 458999999999999999998877 555 44443
No 498
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=82.66 E-value=2.2 Score=55.51 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 885 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~V~~ 885 (1119)
..+|+.||+|+|||..+...+... +...+.+.+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 479999999999998765443332 444554443
No 499
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=82.61 E-value=0.57 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001227 853 KGILLFGPPGTGKTMLAKAVATEA 876 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~el 876 (1119)
.-+.|.||+|+|||||.+.|+...
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999998655
No 500
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=82.56 E-value=0.72 Score=44.65 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001227 853 KGILLFGPPGTGKTMLAKAVATE 875 (1119)
Q Consensus 853 ~gILL~GPpGTGKT~LArAIA~e 875 (1119)
..|++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
Done!