BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001228
(1119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 23/225 (10%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGG--YIEGDI 926
KT +GE+ + L +V+ + G ++MG SG+GK+T+++++ + T G YI+ +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NI 67
Query: 927 KISGYPKNQETFARVS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
K + ++ T R G+ Q P +T E++ + + ++R+ E
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+++ EL + + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 128 CLKMAEL----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEK 183
Query: 1045 VMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088
+M+ ++ + G+TVV H ++ F G R+IY
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINVARF-----------GERIIY 217
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 102/247 (41%), Gaps = 55/247 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
LK+V+ +K ++GP G+GK+T ML + G L K P
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDK-------------------PTEG 60
Query: 247 CAYISQ---HDLHHGEMTV--RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
YI +DL E+T R+ + F V ++ L+ L+ E + E+
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGF------VFQQFNLIPLLTALE-------NVELP 107
Query: 302 AFMK-AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
K A++G+E LK+ L+ + +SGGQ++RV L
Sbjct: 108 LIFKYRGAMSGEERRKRALECLKMAELE----ERFANHKPNQLSGGQQQRVAIARALANN 163
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF-----DDII 415
++ D+ + LDS T +I + LK++ T++V T+D+ + II
Sbjct: 164 PPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVV-------THDINVARFGERII 216
Query: 416 LLSEGQI 422
L +G++
Sbjct: 217 YLKDGEV 223
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 31/236 (13%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L V+ F G + ++G +G+GKTTL+ +LAG G+I + G P + +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 942 SGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
GY QN TV E + +S + + + +KR + +V+ELV G
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKR---IKKVLELV----------G 129
Query: 1001 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
L G++ LS Q++RL IA L + + +DEP S LD + + + + + +
Sbjct: 130 LSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE 189
Query: 1056 GRTVVCTIHQPSIDIFEAFDEL--LLLKRGGRVIYAGPLGHESHKLIEYFEVSIPF 1109
G+ ++ H+ E D++ +L G + + G E E+ +V IPF
Sbjct: 190 GKGIILVTHE-----LEYLDDMDFILHISNGTIDFCG--SWEEFVEREFDDVEIPF 238
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 51/251 (20%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LKDV+ + ++ +++G G+GKTTL+ LAG L A+G+I G + F+ ++
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA----AAGEIFLDGSPADPFLLRK 81
Query: 246 TCAYISQHDLHH-GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
Y+ Q+ TV E + FS +G+ +E+ +R K+
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMRKRIKK------------- 123
Query: 305 KAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
VL+++GL AD + +SGGQK+R+ ML
Sbjct: 124 ----------------VLELVGLSGLAAADPL-------NLSGGQKQRLAIASMLARDTR 160
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
L +DE + LD + +I + L+ + + + L+ E D D I+ +S G I
Sbjct: 161 FLALDEPVSMLDPPSQREIFQVLESLKN---EGKGIILVTHELEYLDDMDFILHISNGTI 217
Query: 423 VYQGPRDNVLE 433
+ G + +E
Sbjct: 218 DFCGSWEEFVE 228
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 20/216 (9%)
Query: 884 HSVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETF 938
H++ G+ + G +TA++G +G GK+TL G + + G I D K Y +
Sbjct: 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81
Query: 939 ARVS-GYCEQNDIHSPY-VTVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVELKSLN 995
R S G Q+ + + +VY+ + + A ++L D + +KR VD ++ ++ L
Sbjct: 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED-EIRKR---VDNALKRTGIEHLK 137
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVD 1054
D LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V +
Sbjct: 138 DK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
G T++ H IDI + + + + + GRVI G
Sbjct: 193 LGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 226
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396
D+ +S GQKKRV +LV VL +DE + GLD +I K L +M L +T+
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITI 197
Query: 397 IVALLQPAPETYDL------FDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKG 447
I+A T+D+ D++ ++ EG+++ QG V E + + P
Sbjct: 198 IIA-------THDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGH 250
Query: 448 VADFLQE 454
+ + L+E
Sbjct: 251 LMEILKE 257
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 23/225 (10%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGG--YIEGDI 926
KT +GE+ + L +V+ + G ++MG SG+GK+T+++++ + T G YI+ +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID-NI 67
Query: 927 KISGYPKNQETFARVS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
K + ++ T R G+ Q P +T E++ + + ++R+ E
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+++ EL + + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 128 CLKMAEL----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 1045 VMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088
+M+ ++ + G+TVV H ++ F G R+IY
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINVARF-----------GERIIY 217
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 102/247 (41%), Gaps = 55/247 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
LK+V+ +K ++GP G+GK+T ML + G L K P
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDK-------------------PTEG 60
Query: 247 CAYISQ---HDLHHGEMTV--RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
YI +DL E+T R+ + F V ++ L+ L+ E + E+
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGF------VFQQFNLIPLLTALE-------NVELP 107
Query: 302 AFMK-AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
K A++G+E LK+ L+ + +SGGQ++RV L
Sbjct: 108 LIFKYRGAMSGEERRKRALECLKMAELE----ERFANHKPNQLSGGQQQRVAIARALANN 163
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF-----DDII 415
++ D+ + LDS T +I + LK++ T++V T+D+ + II
Sbjct: 164 PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVV-------THDINVARFGERII 216
Query: 416 LLSEGQI 422
L +G++
Sbjct: 217 YLKDGEV 223
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKNQETFARVSGYCEQND 949
G +G SG GK+TL+ ++AG +T G G+ +++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 950 IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009
P+++V E++ + L + +R V++V E+++L L D LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDRKP-----KALSG 136
Query: 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1067
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1068 IDIFEAFDELLLLKRGGRVIYAG 1090
++ D++++L GRV G
Sbjct: 195 VEAMTLADKIVVLD-AGRVAQVG 216
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 52/270 (19%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V + KD++ + + +GP G GK+TL+ +AG + SG + +N+ P
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPP 72
Query: 244 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R + Q + ++V E + F G+K
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSF------------------------GLK------- 101
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+AG + ++ V ++ + A + D + +SGGQ++RV G LV +
Sbjct: 102 ------LAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPS 153
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
V +DE + LD++ Q+ + ++ L TMI + E L D I++L G++
Sbjct: 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 212
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G LE + + P + VA F+
Sbjct: 213 AQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKNQETFARVSGYCEQND 949
G +G SG GK+TL+ ++AG +T G G+ +++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 950 IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009
P+++V E++ + L + +R V++V E+++L L D LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDRKP-----KALSG 136
Query: 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1067
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1068 IDIFEAFDELLLLKRGGRVIYAG 1090
++ D++++L GRV G
Sbjct: 195 VEAMTLADKIVVLD-AGRVAQVG 216
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 52/270 (19%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V + KD++ + + +GP G GK+TL+ +AG + SG + +N+ P
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPP 72
Query: 244 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R + Q + ++V E + F G+K
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSF------------------------GLK------- 101
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+AG + ++ V ++ + A + D + +SGGQ++RV G LV +
Sbjct: 102 ------LAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPS 153
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
V +DE + LD++ Q+ + ++ L TMI + E L D I++L G++
Sbjct: 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 212
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G LE + + P + VA F+
Sbjct: 213 AQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 33/232 (14%)
Query: 882 LLHSVSGVFRPGVLTAL---------------MGVSGAGKTTLMDVLAG---RKTGG-YI 922
++ +VS VF+ G + AL +G SGAGKTT M ++AG TG Y
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 923 EGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFV 982
+ + S R G Q P +T +E++ + S + +KR V
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---V 121
Query: 983 DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-- 1040
+EV +++++ + + P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 122 EEVAKILDIHHV---LNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 1041 -AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+A +++ V++ + G T++ H P+ DIF D + +L +G V P
Sbjct: 177 DSARALVKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP 225
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 40/252 (15%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KK V L +V+ ++ +LGP GAGKTT M +AG D+ ++G++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL---DVPSTGELYFD----- 65
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDP 298
R A +G++ V R +G V + L L+ E
Sbjct: 66 ----DRLVA-------SNGKLIVPP----EDRKIGMVFQTWALYPNLTAFEN-------- 102
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
I + + ++ +E + V KIL + V + R +SG Q++RV LV
Sbjct: 103 -IAFPLTNMKMSKEEIRKRVEEVAKILDIH-----HVLNHFPRELSGAQQQRVALARALV 156
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++L +DE + LD+ +K++ L VT++V PA + + + D + +L
Sbjct: 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV 215
Query: 419 EGQIVYQG-PRD 429
+G++V G P D
Sbjct: 216 KGKLVQVGKPED 227
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 47/264 (17%)
Query: 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGK 230
+G+ + P RSVR VS ++ M LLGP G+GKTT++ +AG + G
Sbjct: 18 VGVEKIYPGGARSVR---GVSFQIREGEMVGLLGPSGSGKTTILRLIAGL---ERPTKGD 71
Query: 231 ITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
+ G + + PQ R + Q+ MTV + + F RE
Sbjct: 72 VWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFG-----------------LRE 114
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349
K+ P E+DA ++ + L+ + L+ A+ + +SGGQ++
Sbjct: 115 KRV---PKDEMDARVREL--------------LRFMRLESYANRFPHE-----LSGGQQQ 152
Query: 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409
RV L VL DE +D+ ++ F++Q+ + VT + + E +
Sbjct: 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF-VTHDQEEALE 211
Query: 410 LFDDIILLSEGQIVYQGPRDNVLE 433
+ D +++L EG + G + V E
Sbjct: 212 VADRVLVLHEGNVEQFGTPEEVYE 235
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 20/206 (9%)
Query: 885 SVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETF 938
SV GV R G + L+G SG+GKTT++ ++AG R T G + G +++ P +
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK--- 86
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R G QN ++TVY+++ + LR V + V E++ + L+S +
Sbjct: 87 -RNVGLVFQNYALFQHMTVYDNVSFG--LR-EKRVPKDEMDARVRELLRFMRLESYANRF 142
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1057
LS Q++R+ +A L P ++ DEP + +D + + VR D G
Sbjct: 143 -----PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRG 1083
T V H + E D +L+L G
Sbjct: 198 TSVFVTHDQE-EALEVADRVLVLHEG 222
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKNQETFARVSGYCEQND 949
G +G SG GK+TL+ ++AG +T G G+ +++ P + R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 950 IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009
P+++V E++ + L + +R V++V E+++L L D LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDRKP-----KALSG 136
Query: 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1067
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1068 IDIFEAFDELLLLKRGGRVIYAG 1090
++ D++++L GRV G
Sbjct: 195 VEAMTLADKIVVLD-AGRVAQVG 216
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 52/270 (19%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V + KD++ + + +GP G GK+TL+ +AG + SG + +N+ P
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPP 72
Query: 244 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R + Q + ++V E + F G+K
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSF------------------------GLK------- 101
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+AG + ++ V ++ + A + D + +SGGQ++RV G LV +
Sbjct: 102 ------LAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPS 153
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
V +D+ + LD++ Q+ + ++ L TMI + E L D I++L G++
Sbjct: 154 VFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 212
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G LE + + P + VA F+
Sbjct: 213 AQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 40/219 (18%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KNQE 936
+L +++ + G + ++G SG+GK+TL ++ YI G + I G+ +
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 75
Query: 937 TFARVSGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
R G Q+++ +P ++V E ++Y+A L + D
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 123
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+ EL+ +++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 124 ---ISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+MR + + + GRTV+ H+ S + D ++++++G
Sbjct: 180 IMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 59
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 60 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 113
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 114 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 164
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I L D II++ +G+IV Q
Sbjct: 165 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 220
Query: 426 GPRDNVL 432
G +L
Sbjct: 221 GKHKELL 227
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 16/190 (8%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQ 935
+++ + VS + G AL+G SG GKTT + +LAG + T G I D+ ++ P
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
R G QN P++TV+E++ + R S + +KR V+E+ ++
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKR------VVEIARKLLID 124
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1054
+ + P + LS Q++R+ +A LV P ++ DEP S LDA I+ +++ +
Sbjct: 125 NLLDRKP--TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182
Query: 1055 TGRTVVCTIH 1064
G T V H
Sbjct: 183 LGITSVYVTH 192
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 117/288 (40%), Gaps = 44/288 (15%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V+ + VS VK LLGP G GKTT +L LAG SG+I + +N+
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVLVNDIP 71
Query: 243 PQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P+ R + Q+ + MTV E + F R +S+ E +
Sbjct: 72 PKYREVGMVFQNYALYPHMTVFENIAFPLRA----------RRISKDEVEK--------- 112
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ V +A + L+ D +L D +SGGQ++RV LV
Sbjct: 113 ---RVVEIARK---LLIDNLL--------------DRKPTQLSGGQQQRVALARALVKQP 152
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
VL DE + LD++ + +K + L +T + A E + I + ++G+
Sbjct: 153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGK 211
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKN 469
+V G D V + ++M +FL++ + + +Q +++
Sbjct: 212 LVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENKQTILKRD 259
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 15/160 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQETFA 939
L++++ + G AL+G SG+GK+TL+ +AG + T G I D K ++ P
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R G QN P++TVY+++ + LR + + K+ V EV +++ + L +
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAKMLHIDKLLNRYP 131
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 132 W-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 109/267 (40%), Gaps = 52/267 (19%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-R 245
L +++ +K LLGP G+GK+TL+ +AG SGKI + ++ E P+ R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVTELPPKDR 75
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
+ Q+ + MTV + + F EL + P EID ++
Sbjct: 76 NVGLVFQNWALYPHMTVYKNIAFP-------------LELRK-------APREEIDKKVR 115
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
VA L+ Y + +SGGQ++RV LV VL
Sbjct: 116 EVAKMLHIDKLLNRYPWQ-------------------LSGGQQQRVAIARALVKEPEVLL 156
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
+DE + LD+ ++ LK++ L +T + A E + D I ++ EG+I+
Sbjct: 157 LDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQV 215
Query: 426 GPRDNVLEFFEHMGFKCPERKGVADFL 452
G D V + P+ K V FL
Sbjct: 216 GTPDEV--------YYKPKYKFVGGFL 234
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 40/219 (18%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KNQE 936
+L +++ + G + ++G SG+GK+TL ++ YI G + I G+ +
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 73
Query: 937 TFARVSGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
R G Q+++ +P ++V E ++Y+A L + D
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 121
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+ EL+ +++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 122 ---ISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+MR + + + GRTV+ H+ S + D ++++++G
Sbjct: 178 IMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 57
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 58 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 111
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 112 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 162
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I L D II++ +G+IV Q
Sbjct: 163 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 218
Query: 426 GPRDNVL 432
G +L
Sbjct: 219 GKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 40/219 (18%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KNQE 936
+L +++ + G + ++G SG+GK+TL ++ YI G + I G+ +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 937 TFARVSGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
R G Q+++ +P ++V E ++Y+A L + D
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 127
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+ EL+ +++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 128 ---ISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+MR + + + GRTV+ H+ S + D ++++++G
Sbjct: 184 IMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 63
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 118 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I L D II++ +G+IV Q
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 224
Query: 426 GPRDNVL 432
G +L
Sbjct: 225 GKHKELL 231
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 15/197 (7%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFARVSGYCE 946
+ G L+G SG GKTT + ++AG T G I GD ++ P + V
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF---- 89
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
Q+ P++TVYE++ + ++ + KR + E++++ EL LN +
Sbjct: 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL--LNRY------PAQ 141
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ + +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201
Query: 1067 SIDIFEAFDELLLLKRG 1083
++ D + ++ RG
Sbjct: 202 QVEAMTMGDRIAVMNRG 218
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 108/292 (36%), Gaps = 70/292 (23%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-RTCAYISQ 252
+K +LLGP G GKTT + +AG + G+I + ++ P+ R + + Q
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGL---EEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
MTV E + F + P EID ++ A Q
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKF--------------------PKDEIDKRVRWAAELLQ 130
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
L+ Y ++ SGGQ++RV +V +VL MDE +
Sbjct: 131 IEELLNRYPAQL-------------------SGGQRQRVAVARAIVVEPDVLLMDEPLSN 171
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG------ 426
LD+ + +K++ L VT I + E + D I +++ GQ++ G
Sbjct: 172 LDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 230
Query: 427 --------------PRDNVLE------FFEHMGFKCPERKGVADFLQEVTSK 458
P N+LE + E GF+ + + D L++ K
Sbjct: 231 LRPNSVFVATFIGAPEMNILEVSVGDGYLEGRGFRIELPQDLMDLLKDYVGK 282
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 15/197 (7%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFARVSGYCE 946
+ G L+G SG GKTT + ++AG T G I GD ++ P + V
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF---- 90
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
Q+ P++TVYE++ + ++ + KR + E++++ EL LN +
Sbjct: 91 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL--LNRY------PAQ 142
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ + +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 202
Query: 1067 SIDIFEAFDELLLLKRG 1083
++ D + ++ RG
Sbjct: 203 QVEAMTMGDRIAVMNRG 219
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 108/292 (36%), Gaps = 70/292 (23%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-RTCAYISQ 252
+K +LLGP G GKTT + +AG + G+I + ++ P+ R + + Q
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGL---EEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 91
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
MTV E + F + P EID ++ A Q
Sbjct: 92 SYAVWPHMTVYENIAFPLKIKKF--------------------PKDEIDKRVRWAAELLQ 131
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
L+ Y ++ SGGQ++RV +V +VL MDE +
Sbjct: 132 IEELLNRYPAQL-------------------SGGQRQRVAVARAIVVEPDVLLMDEPLSN 172
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG------ 426
LD+ + +K++ L VT I + E + D I +++ GQ++ G
Sbjct: 173 LDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 231
Query: 427 --------------PRDNVLE------FFEHMGFKCPERKGVADFLQEVTSK 458
P N+LE + E GF+ + + D L++ K
Sbjct: 232 LRPNSVFVATFIGAPEMNILEVSVGDGYLEGRGFRIELPQDLMDLLKDYVGK 283
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 33/221 (14%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ- 935
+D Q+L +S +P + A G SG GK+T+ +L + G+I I G P +
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 936 --ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE----VMELV 989
E + G+ Q D T+ E+L Y L D + DE V++L
Sbjct: 70 SLENWRSQIGFVSQ-DSAIMAGTIRENLTYG----LEGD--------YTDEDLWQVLDLA 116
Query: 990 ELKSLNDSM-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
+S ++M VG GV +S QR+RL IA + NP I+ +DE T+ LD+ +
Sbjct: 117 FARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175
Query: 1043 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
++V + + +++ GRT + H+ S I +A D++ +++G
Sbjct: 176 SMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 48/255 (18%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
S +IL+D+S +P+ + GP G GK+T+ +L + + +G+IT G ++
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTI-FSLLERFYQP--TAGEITIDGQPIDNIS 70
Query: 243 PQR---TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ ++SQ D T+RE L + G++ D
Sbjct: 71 LENWRSQIGFVSQ-DSAIMAGTIRENLTY------------------------GLEGDYT 105
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEML 357
+ + + +A S V + ++ +T VG+ RG ISGGQ++R+
Sbjct: 106 DEDLWQVLDLAFAR-SFVENMPDQL-------NTEVGE---RGVKISGGQRQRLAIARAF 154
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
+ +L +DE + LDS + + K L ++ +I L + D I +
Sbjct: 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDA----DKIYFI 210
Query: 418 SEGQIVYQGPRDNVL 432
+GQI G + ++
Sbjct: 211 EKGQITGSGKHNELV 225
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 33/232 (14%)
Query: 882 LLHSVSGVFRPGVLTAL---------------MGVSGAGKTTLMDVLAG---RKTGG-YI 922
++ +VS VF+ G + AL +G SGAGKTT M ++AG TG Y
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 923 EGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFV 982
+ + S R G Q P +T +E++ + S + +KR V
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---V 121
Query: 983 DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-- 1040
+EV +++++ + + P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 122 EEVAKILDIHHV---LNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 1041 -AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+A +++ V++ + G T++ H P+ DIF D + +L +G V P
Sbjct: 177 DSARALVKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP 225
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 111/252 (44%), Gaps = 40/252 (15%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KK V L +V+ ++ +LGP GAGKTT M +AG D+ ++G++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL---DVPSTGELYF------ 64
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDP 298
R A +G++ V R +G V + L L+ E
Sbjct: 65 ---DDRLVA-------SNGKLIVPP----EDRKIGMVFQTWALYPNLTAFEN-------- 102
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
I + + ++ +E + V KIL + V + R +SGGQ++RV LV
Sbjct: 103 -IAFPLTNMKMSKEEIRKRVEEVAKILDIH-----HVLNHFPRELSGGQQQRVALARALV 156
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++L +DE + LD+ +K++ L VT++V PA + + + D + +L
Sbjct: 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV 215
Query: 419 EGQIVYQG-PRD 429
+G++V G P D
Sbjct: 216 KGKLVQVGKPED 227
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 40/219 (18%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KNQE 936
+L +++ + G + ++G +G+GK+TL ++ YI G + I G+ +
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 75
Query: 937 TFARVSGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
R G Q+++ +P ++V E ++Y+A L + D
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 123
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+ EL+ +++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 124 ---ISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+MR + + + GRTV+ H+ S + D ++++++G
Sbjct: 180 IMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLT-----KLIQRF---------------YIPEN 59
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 60 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 113
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 114 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 164
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I L D II++ +G+IV Q
Sbjct: 165 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 220
Query: 426 GPRDNVL 432
G +L
Sbjct: 221 GKHKELL 227
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 40/219 (18%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KNQE 936
+L +++ + G + ++G SG+GK+TL ++ YI G + I G+ +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 937 TFARVSGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
R G Q+++ +P ++V E ++Y+A L + D
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 127
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+ EL+ +++VG G +GLS QR+R+ IA LV NP I+ D+ TS LD + +
Sbjct: 128 ---ISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHV 183
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+MR + + + GRTV+ H+ S + D ++++++G
Sbjct: 184 IMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 63
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 118 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
D+ ++ LD + I + + ++ V +I L D II++ +G+IV Q
Sbjct: 169 FDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 224
Query: 426 GPRDNVL 432
G +L
Sbjct: 225 GKHKELL 231
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 20/214 (9%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKNQE 936
+Q+L ++ + G AL+G SG GK+T + ++ ++ ++G + I G N
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVR 460
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME---LVELKS 993
+ G Q + T+ E++ Y DV + + V E +++L
Sbjct: 461 YLREIIGVVSQEPVLFA-TTIAENIRYG-----REDVTMDEIEKAVKEANAYDFIMKLPH 514
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
D++VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 515 QFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKA 572
Query: 1054 DTGRTVVCTIHQPSI----DIFEAFDELLLLKRG 1083
GRT + H+ S D+ FD +++++G
Sbjct: 573 REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 12/191 (6%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L +S + G AL+G SG GK+T++ +L + + G + + G Q +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 942 S---GYCEQNDIHSPYVTVYESLLYSAWLRLSS--DVDTKKRKMFVDEVMELVELKSLND 996
G Q I ++ E++ Y R+ S ++ ++ + + ++ L +
Sbjct: 1106 RAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID--SLPDKYN 1162
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+ VG G LS Q++R+ IA LV P I+ +DE TS LD + +V + + G
Sbjct: 1163 TRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREG 1220
Query: 1057 RTVVCTIHQPS 1067
RT + H+ S
Sbjct: 1221 RTCIVIAHRLS 1231
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 39/206 (18%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233
+H ++ V+ILK ++ VK + L+G G GK+T + L +L L G ++
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST-TVQLMQRLYDPL--DGMVSI 449
Query: 234 CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
G ++ RT + VR + +GV ++ +L + E
Sbjct: 450 DGQDI------RT-------------INVR----YLREIIGVVSQEPVLFATTIAENIRY 486
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRV 351
+ D +D KAV A D+++K L DT+VG+ RG +SGGQK+R+
Sbjct: 487 GREDVTMDEIEKAVKEAN-----AYDFIMK---LPHQFDTLVGE---RGAQLSGGQKQRI 535
Query: 352 TTGEMLVGTANVLYMDEISTGLDSST 377
LV +L +DE ++ LD+ +
Sbjct: 536 AIARALVRNPKILLLDEATSALDTES 561
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
Query: 165 NMLESAL---GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221
NMLE + G++ P++ S+ +L+ +S VK + L+G G GK+T++ L
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 222 GKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278
+G + G E+ + Q +SQ + + ++ E + + G +R
Sbjct: 1084 DP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAY-----GDNSR 1134
Query: 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338
E+ R K+A I ID SL Y +T VGD+
Sbjct: 1135 VVSYEEIVRAAKEANIHQ--FID-------------SLPDKY-----------NTRVGDK 1168
Query: 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSST 377
+ +SGGQK+R+ LV ++L +DE ++ LD+ +
Sbjct: 1169 GTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 20/214 (9%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKNQE 936
+Q+L ++ + G AL+G SG GK+T + ++ ++ ++G + I G N
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVR 460
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME---LVELKS 993
+ G Q + T+ E++ Y DV + + V E +++L
Sbjct: 461 YLREIIGVVSQEPVLFA-TTIAENIRYG-----REDVTMDEIEKAVKEANAYDFIMKLPH 514
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
D++VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 515 QFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKA 572
Query: 1054 DTGRTVVCTIHQPSI----DIFEAFDELLLLKRG 1083
GRT + H+ S D+ FD +++++G
Sbjct: 573 REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 12/191 (6%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L +S + G AL+G SG GK+T++ +L + + G + + G Q +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 942 S---GYCEQNDIHSPYVTVYESLLYSAWLRLSS--DVDTKKRKMFVDEVMELVELKSLND 996
G Q I ++ E++ Y R+ S ++ ++ + + ++ L +
Sbjct: 1106 RAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID--SLPDKYN 1162
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+ VG G LS Q++R+ IA LV P I+ +DE TS LD + +V + + G
Sbjct: 1163 TRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREG 1220
Query: 1057 RTVVCTIHQPS 1067
RT + H+ S
Sbjct: 1221 RTCIVIAHRLS 1231
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 39/206 (18%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233
+H ++ V+ILK ++ VK + L+G G GK+T + L +L L G ++
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST-TVQLMQRLYDPL--DGMVSI 449
Query: 234 CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
G ++ RT + VR + +GV ++ +L + E
Sbjct: 450 DGQDI------RT-------------INVR----YLREIIGVVSQEPVLFATTIAENIRY 486
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRV 351
+ D +D KAV A D+++K L DT+VG+ RG +SGGQK+R+
Sbjct: 487 GREDVTMDEIEKAVKEAN-----AYDFIMK---LPHQFDTLVGE---RGAQLSGGQKQRI 535
Query: 352 TTGEMLVGTANVLYMDEISTGLDSST 377
LV +L +DE ++ LD+ +
Sbjct: 536 AIARALVRNPKILLLDEATSALDTES 561
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
Query: 165 NMLESAL---GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221
NMLE + G++ P++ S+ +L+ +S VK + L+G G GK+T++ L
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 222 GKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278
+G + G E+ + Q +SQ + + ++ E + + G +R
Sbjct: 1084 DP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAY-----GDNSR 1134
Query: 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338
E+ R K+A I ID SL Y +T VGD+
Sbjct: 1135 VVSYEEIVRAAKEANIHQ--FID-------------SLPDKY-----------NTRVGDK 1168
Query: 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSST 377
+ +SGGQK+R+ LV ++L +DE ++ LD+ +
Sbjct: 1169 GTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 22/219 (10%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKNQE 936
L++L ++ R G + ++G SG+GK+T + ++L G I I + N
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYS-----AWLRLSSDVDTKKRKMFVDEVMELVEL 991
G Q P++TV ++ + W R ++ + MEL++
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA----------KAMELLDK 125
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
L D P LS Q +R+ IA L P I+ DEPTS LD V+ ++
Sbjct: 126 VGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ G T+V H+ E D +L + GG +I G
Sbjct: 184 LANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 220
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ +RV L ++ DE ++ LD ++ +KQ+ + +TM+V +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVV-VTH 196
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
++ D ++ + G I+ +G +++ + +H
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 231
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 22/219 (10%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKNQE 936
L++L ++ R G + ++G SG+GK+T + ++L G I I + N
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYS-----AWLRLSSDVDTKKRKMFVDEVMELVEL 991
G Q P++TV ++ + W R ++ + MEL++
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA----------KAMELLDK 146
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
L D P LS Q +R+ IA L P I+ DEPTS LD V+ ++
Sbjct: 147 VGLKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ G T+V H+ E D +L + GG +I G
Sbjct: 205 LANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 241
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ +RV L ++ DE ++ LD ++ +KQ+ + +TM+V +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVV-VTH 217
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
++ D ++ + G I+ +G +++ + +H
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 252
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 17/206 (8%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L S++ G AL+G +G+GK+T+ +L EGDIKI G KN + R S
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGG--KNVNKYNRNS 90
Query: 943 -----GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
G Q+ I Y ++LY +V + + + +E + K D+
Sbjct: 91 IRSIIGIVPQDTILFNETIKY-NILYGKLDATDEEVIKATKSAQLYDFIEALPKKW--DT 147
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
+VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ + + V + + R
Sbjct: 148 IVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNR 205
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRG 1083
T++ H+ S + + ++LL +G
Sbjct: 206 TLIIIAHRLS--TISSAESIILLNKG 229
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI 391
DT+VG++ + +SGG+++R+ L+ ++ DE ++ LDS T + ++ V
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY----LFQKAVED 200
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEF 434
L + ++ T + IILL++G+IV +G ++L+
Sbjct: 201 LRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 40/219 (18%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KNQE 936
+L +++ + G + ++G SG+GK+TL ++ YI G + I G+ +
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 73
Query: 937 TFARVSGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
R G Q+++ +P ++V E ++Y+A L + D
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 121
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+ EL+ +++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 122 ---ISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 177
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+MR + + + GRTV+ I + + D ++++++G
Sbjct: 178 IMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 57
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 58 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 111
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 112 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 162
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I A L D II++ +G+IV Q
Sbjct: 163 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNA----DRIIVMEKGKIVEQ 218
Query: 426 GPRDNVL 432
G +L
Sbjct: 219 GKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 40/219 (18%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KNQE 936
+L +++ + G + ++G SG+GK+TL ++ YI G + I G+ +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 937 TFARVSGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
R G Q+++ +P ++V E ++Y+A L + D
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDF----------- 127
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+ EL+ +++VG G +GLS QR+R+ IA LV NP I+ DE TS LD + +
Sbjct: 128 ---ISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+MR + + + GRTV+ I + + D ++++++G
Sbjct: 184 IMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 63
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 118 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I A L D II++ +G+IV Q
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNA----DRIIVMEKGKIVEQ 224
Query: 426 GPRDNVL 432
G +L
Sbjct: 225 GKHKELL 231
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 56/220 (25%), Positives = 103/220 (46%), Gaps = 14/220 (6%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGG--YIEGDI 926
KT GE+ + L +V+ + G ++ G SG+GK+T ++++ + T G YI+ +I
Sbjct: 9 KTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYID-NI 67
Query: 927 KISGYPKNQETFARVS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
K + ++ T R G+ Q P +T E++ + ++R+ E
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALE 127
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
++ EL + + LS Q++R+ IA L NP II DEPT LD++
Sbjct: 128 CLKXAEL----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEK 183
Query: 1045 VMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+ + ++ + G+TVV H I++ + ++ LK G
Sbjct: 184 IXQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388
+SGGQ++RV L ++ DE + LDS T +I + LK++
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 21/193 (10%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI 950
G + A++G +G GK+TL+D+L G R G IE I P+
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQF---------------F 75
Query: 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010
SP+ S+L + S+ ++T + D + + L LN + + + LS
Sbjct: 76 SSPFAY---SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132
Query: 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1069
QR+ + IA + + +I +DEPTS LD IV+ + + + TVV T HQP+
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192
Query: 1070 IFEAFDELLLLKR 1082
+ A LLL K+
Sbjct: 193 VAIANKTLLLNKQ 205
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 37/85 (43%)
Query: 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
DY + + LD T + +SGGQ++ + + ++ +DE ++ LD +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 379 FQICKFLKQMVHILDVTMIVALLQP 403
+ L + ++T++ QP
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 47/258 (18%)
Query: 850 FQPLSLTFDNMSYFVDMPAEMKTE------GVGEDRLQLLHSVSGVFRPGVLTALMGVSG 903
F+P + F +S VD+ E E G +L++ G R G + ++G +G
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV---EPGEIRKGEVIGIVGPNG 392
Query: 904 AGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961
GKTT + +LAG T G +E D+ ++ P Q A G TVYE
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYE-- 436
Query: 962 LYSAWLRLSSDVDTKK--RKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAV 1019
L S +D+ K + E+++ + + L D V LS + +R+ IA
Sbjct: 437 -------LLSKIDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAA 484
Query: 1020 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1079
L+ + I +DEP++ LD V R +R+ ++ + + I D L++
Sbjct: 485 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 544
Query: 1080 LK----RGGRVIYAGPLG 1093
+ R GR + P+G
Sbjct: 545 FEGEPGRHGRAL--PPMG 560
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 20/189 (10%)
Query: 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG----DIKISGYPKN--QETFARVS 942
+ + G++ ++G +G GKTT + +LAG+ E D I + N Q F R+
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL- 171
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMF--VDEVMELVELKSLNDSMVG 1000
+ +I Y LL A V K R++ VDEV + E+ +
Sbjct: 172 ---KNGEIRPVVKPQYVDLLPKA-------VKGKVRELLKKVDEVGKFEEVVKELELENV 221
Query: 1001 LP-GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
L + LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V
Sbjct: 222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281
Query: 1060 VCTIHQPSI 1068
+ H ++
Sbjct: 282 LVVEHDLAV 290
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 109/281 (38%), Gaps = 70/281 (24%)
Query: 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251
G ++ + ++GP G GKTT + LAG + GK+ + T AY
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGV---EEPTEGKVEW----------DLTVAYKP 423
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
Q+ E GT YELL++ ID+ +
Sbjct: 424 QYIKAEYE----------------GTVYELLSK---------------IDS-------SK 445
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
++ +LK LG+ D V D +SGG+ +RV L+ A++ +DE S
Sbjct: 446 LNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSA 500
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431
LD + + ++ ++ + T +V +D+ I +S+ IV++G
Sbjct: 501 YLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVL-MIDYVSDRLIVFEGEPGRH 552
Query: 432 LEFFEHMGFKCPERKGVADFLQEV--TSKKDQEQYWFRKNQ 470
MG R+G+ FL V T ++D + R N+
Sbjct: 553 GRALPPMGM----REGMNRFLASVGITFRRDPDSGRPRANK 589
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIV 398
+SGG+ +RV L+ A+ + DE S+ LD ++ + ++++ + +L V +
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 399 ALLQPAPETYDLFDDIILLSEGQI-VY------QGPRDNVLEFFE 436
A+L D D+I + G+ VY +G R+ + EF +
Sbjct: 289 AVL-------DYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQ 326
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 7/214 (3%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKNQETF 938
+L V+ V G + ALMG +GAGK+TL +LAG G+I + G + +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 939 ARVSGYCE-QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
AR + Q + P VT+ L + +L +V + F +V + +EL ++S
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALELLDWDES 134
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
+ G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 135 YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNF 194
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ H I + D++ ++ G V GP
Sbjct: 195 GALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 107/268 (39%), Gaps = 47/268 (17%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
ILK V+ +V + L+GP GAGK+TL LAG + G+I G + E P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDE 76
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
++ L + + ++ G + R L A+L R
Sbjct: 77 R----ARKGLF---LAFQYPVEVPGVTIANFLRLALQAKLGRE----------------- 112
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
V VA E L++L D ++ + + G SGG+KKR ++LV
Sbjct: 113 -VGVA--EFWTKVKKALELLDWD---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV 166
Query: 366 MDEISTGLDSSTTFQICKFLKQM-------VHILDVTMIVALLQPAPETYDLFDDIILLS 418
+DE +GLD + + + M + I I+ +QP D + ++
Sbjct: 167 LDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQP--------DKVHVMM 218
Query: 419 EGQIVYQGPRDNVLEFFEHMGFKCPERK 446
+G++V G + LE E G++ + K
Sbjct: 219 DGRVVATGGPELALE-LEAKGYEWLKEK 245
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 13/222 (5%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYIE--GDIKISG 930
ED+ +L +S PG + A+MG +G+GK+TL LAGR+ TGG +E G ++
Sbjct: 31 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89
Query: 931 YPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAW--LRLSSDVDTKKRKMFVDEVMEL 988
P+++ + Q + P V+ + L +A +R +T R F D + E
Sbjct: 90 SPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
+ L + + ++ G S ++KR I V P + +DE SGLD A +V
Sbjct: 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
V + D R+ + H I + D + +L + GR++ +G
Sbjct: 207 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQ-GRIVKSG 247
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 37/194 (19%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL+ +S V P + ++GP G+GK+TL LAG+ ++ G + + G +L P+
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPE- 92
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
D +G + + +Y + + G+ + +
Sbjct: 93 ---------------------DRAGEGIFMAFQYPV--------EIPGVSNQFFLQTALN 123
Query: 306 AV-AVAGQETSLVTDYVLKILGLDICADTMVGDEMRR----GISGGQKKRVTTGEMLVGT 360
AV + GQET D+ ++ I M D + R G SGG+KKR +M V
Sbjct: 124 AVRSYRGQETLDRFDFQ-DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 182
Query: 361 ANVLYMDEISTGLD 374
+ +DE +GLD
Sbjct: 183 PELCILDESDSGLD 196
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 47/258 (18%)
Query: 850 FQPLSLTFDNMSYFVDMPAEMKTE------GVGEDRLQLLHSVSGVFRPGVLTALMGVSG 903
F+P + F +S VD+ E E G +L++ G R G + ++G +G
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEV---EPGEIRKGEVIGIVGPNG 378
Query: 904 AGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961
GKTT + +LAG T G +E D+ ++ P Q A G TVYE
Sbjct: 379 IGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYE-- 422
Query: 962 LYSAWLRLSSDVDTKK--RKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAV 1019
L S +D+ K + E+++ + + L D V LS + +R+ IA
Sbjct: 423 -------LLSKIDSSKLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAA 470
Query: 1020 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1079
L+ + I +DEP++ LD V R +R+ ++ + + I D L++
Sbjct: 471 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 530
Query: 1080 LK----RGGRVIYAGPLG 1093
+ R GR + P+G
Sbjct: 531 FEGEPGRHGRAL--PPMG 546
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 20/189 (10%)
Query: 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG----DIKISGYPKN--QETFARVS 942
+ + G++ ++G +G GKTT + +LAG+ E D I + N Q F R+
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL- 157
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMF--VDEVMELVELKSLNDSMVG 1000
+ +I Y LL A V K R++ VDEV + E+ +
Sbjct: 158 ---KNGEIRPVVKPQYVDLLPKA-------VKGKVRELLKKVDEVGKFEEVVKELELENV 207
Query: 1001 LP-GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
L + LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V
Sbjct: 208 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 267
Query: 1060 VCTIHQPSI 1068
+ H ++
Sbjct: 268 LVVEHDLAV 276
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 109/281 (38%), Gaps = 70/281 (24%)
Query: 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251
G ++ + ++GP G GKTT + LAG + GK+ + T AY
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGV---EEPTEGKVEW----------DLTVAYKP 409
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
Q+ E GT YELL++ ID+ +
Sbjct: 410 QYIKAEYE----------------GTVYELLSK---------------IDS-------SK 431
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
++ +LK LG+ D V D +SGG+ +RV L+ A++ +DE S
Sbjct: 432 LNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSA 486
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431
LD + + ++ ++ + T +V +D+ I +S+ IV++G
Sbjct: 487 YLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVL-MIDYVSDRLIVFEGEPGRH 538
Query: 432 LEFFEHMGFKCPERKGVADFLQEV--TSKKDQEQYWFRKNQ 470
MG R+G+ FL V T ++D + R N+
Sbjct: 539 GRALPPMGM----REGMNRFLASVGITFRRDPDSGRPRANK 575
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIV 398
+SGG+ +RV L+ A+ + DE S+ LD ++ + ++++ + +L V +
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 399 ALLQPAPETYDLFDDIILLSEGQI-VY------QGPRDNVLEFFE 436
A+L D D+I + G+ VY +G R+ + EF +
Sbjct: 275 AVL-------DYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQ 312
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 12/217 (5%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYIE--GDIKISGYPKNQ 935
+L +S PG + A+MG +G+GK+TL LAGR+ TGG +E G ++ P+++
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAW--LRLSSDVDTKKRKMFVDEVMELVELKS 993
+ Q + P V+ + L +A +R +T R F D + E + L
Sbjct: 76 AGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 132
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
+ + ++ G S ++KR I V P + +DE SGLD A +V V +
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 192
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
D R+ + H I + D + +L + GR++ +G
Sbjct: 193 DGKRSFIIVTHYQRILDYIKPDYVHVLYQ-GRIVKSG 228
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 37/194 (19%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL+ +S V P + ++GP G+GK+TL LAG+ ++ G + + G +L P+
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPE- 73
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
D +G + + +Y + + G+ + +
Sbjct: 74 ---------------------DRAGEGIFMAFQYPV--------EIPGVSNQFFLQTALN 104
Query: 306 AV-AVAGQETSLVTDYVLKILGLDICADTMVGDEMRR----GISGGQKKRVTTGEMLVGT 360
AV + GQET D+ ++ I M D + R G SGG+KKR +M V
Sbjct: 105 AVRSYRGQETLDRFDFQ-DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 163
Query: 361 ANVLYMDEISTGLD 374
+ +DE +GLD
Sbjct: 164 PELCILDESDSGLD 177
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 11/180 (6%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQET----FARVSGYCEQN 948
G +TAL+G SG+GK+T++ +L + G I + G+ Q +++ ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGL 1007
+ S ++ E++ Y A S + +R V + + +++VG GV L
Sbjct: 428 ILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 484
Query: 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067
S Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H+ S
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS 543
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 112/261 (42%), Gaps = 40/261 (15%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233
+H + V I +D S + +T L+GP G+GK+T +L+L +L ASG I+
Sbjct: 347 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKST-VLSLLLRLYDP--ASGTISL 403
Query: 234 CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
GH++ + P + +R + G ++ +L S E A
Sbjct: 404 DGHDIRQLNP----------------VWLRSKI-------GTVSQEPILFSCSIAENIAY 440
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRV 351
DP A Q + V + V I +T+VG+ +G+ SGGQK+R+
Sbjct: 441 GADDPS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQKQRI 492
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411
L+ +L +DE ++ LD+ + + + L +++ V +I L T
Sbjct: 493 AIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS----TIKNA 548
Query: 412 DDIILLSEGQIVYQGPRDNVL 432
+ + +L +G+I G + +L
Sbjct: 549 NMVAVLDQGKITEYGKHEELL 569
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQET----FARVSGYCEQN 948
G +TAL+G SG+GK+T++ +L + G I + G+ Q +++ ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGL 1007
+ S ++ E++ Y A S + +R V + + +++VG GV L
Sbjct: 459 ILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 515
Query: 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067
S Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H S
Sbjct: 516 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHLS 574
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 48/265 (18%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASG 229
+H + V I +D S + +T L+GP G+GK+T++ L LR ASG
Sbjct: 378 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL-------LRLYDPASG 430
Query: 230 KITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
I+ GH++ + P + I G ++ +L S E
Sbjct: 431 TISLDGHDIRQLNPVWLRSKI-----------------------GTVSQEPILFSCSIAE 467
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQ 347
A DP A Q + V + V I +T+VG+ +G+ SGGQ
Sbjct: 468 NIAYGADDPS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQ 519
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407
K+R+ L+ +L +DE ++ LD+ + + + L +++ V +I L T
Sbjct: 520 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLS----T 575
Query: 408 YDLFDDIILLSEGQIVYQGPRDNVL 432
+ + +L +G+I G + +L
Sbjct: 576 IKNANMVAVLDQGKITEYGKHEELL 600
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 29/217 (13%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET 937
+Q+L ++ PG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ-- 85
Query: 938 FARVSGYCEQNDIHSPYVTV-YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
+ + +H+ V E LL+ R + R ++E+ + +D
Sbjct: 86 -------YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 997 SMVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
+ G P G +G LS QR+ + +A L+ P ++ +D+ TS LDA V R
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQR 197
Query: 1048 TVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+ + + RTV+ HQ + + E +L LK G
Sbjct: 198 LLYESPEWASRTVLLITHQ--LSLAERAHHILFLKEG 232
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 46/256 (17%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+V++L+ ++ + P ++T L+GP G+GK+T+ AL L + GK+ G L ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQP--TGGKVLLDGEPLVQY- 86
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
H LH + VG L R G+ P ++
Sbjct: 87 --------DHHYLH-------------TQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ AVA+ S D+ I G DT VG E +SGGQ++ V L+
Sbjct: 126 -ITAVAM----ESGAHDF---ISGFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPR 176
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPETYDLFDDIILL 417
+L +D+ ++ LD+ ++ + L + +L +T ++L + A I+ L
Sbjct: 177 LLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERA-------HHILFL 229
Query: 418 SEGQIVYQGPRDNVLE 433
EG + QG ++E
Sbjct: 230 KEGSVCEQGTHLQLME 245
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 107/257 (41%), Gaps = 52/257 (20%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL---- 238
V ++++S VK +LLGP G GKTT + +A G + + G+I Y G +L
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIA---GLEEPSRGQI-YIGDKLVADP 70
Query: 239 --NEFVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI 294
FVP R A + Q + MTV + + F + V
Sbjct: 71 EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV------------------- 111
Query: 295 KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354
P EID ++ VA ++LGL T + + R +SGGQ++RV G
Sbjct: 112 -PRQEIDQRVREVA--------------ELLGL-----TELLNRKPRELSGGQRQRVALG 151
Query: 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414
+V V MDE + LD+ ++ LK++ L VT I + E + D I
Sbjct: 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRI 210
Query: 415 ILLSEGQIVYQGPRDNV 431
+++ G + G D V
Sbjct: 211 AVMNRGVLQQVGSPDEV 227
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 23/158 (14%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGY-------PKNQETFARVS 942
G L+G SG GKTT + ++AG + G GD ++ PK+++
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
Y P++TVY+++ + LR + +R V E+ EL L + + P
Sbjct: 89 SYA-----LYPHMTVYDNIAFPLKLRKVPRQEIDQR------VREVAELLGLTELLNRKP 137
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 138 --RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 11/215 (5%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIEGDIKISGYPK 933
G +Q L++VS G + ++G SGAGK+TL+ L R T EG + + G
Sbjct: 14 GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQEL 69
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
+ + ++ Q + + + S + L ++D + V EL+ L
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 129
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 1052
L D P S LS Q++R+ IA L +NP ++ DE TS LD ++ +++
Sbjct: 130 LGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087
G T++ H+ +D+ + + + + G +I
Sbjct: 188 RRLGLTILLITHE--MDVVKRICDCVAVISNGELI 220
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396
D +SGGQK+RV L VL DE ++ LD +TT I + LK + L +T+
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
++ + + D + ++S G+++ Q D V E F H P+ F+Q
Sbjct: 195 LL-ITHEMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQSTL 245
Query: 457 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDL 497
E Y R + P +D V + GQ + + L
Sbjct: 246 HLDIPEDYQER----LQAEPFTDCVPMLRLEFTGQSVDAPL 282
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--------------RKTGGYIEGDI 926
+ L +VS V G + G +G+GK+TL+ ++AG RK G I +I
Sbjct: 23 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI 82
Query: 927 KIS-GYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
I+ YP++Q RV ++ + + A D D V +
Sbjct: 83 GIAFQYPEDQFFAERV----------------FDEVAF-AVKNFYPDRDPVP---LVKKA 122
Query: 986 MELV--ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
ME V + S D + LS +++R+ IA +V P I+ +DEP GLD
Sbjct: 123 MEFVGLDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT 177
Query: 1044 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086
++R V G+TV+ H + D +++L++G +V
Sbjct: 178 DLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKV 219
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 107/258 (41%), Gaps = 54/258 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ L++VS ++ L+ G G+GK+TL+ +AG + SG + Y G +
Sbjct: 23 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDG--------E 71
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY---ELLAELSRREKQAGIK---PDP 298
R Y +R R +G+ +Y + AE E +K PD
Sbjct: 72 RKKGY-----------EIR-------RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR 113
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+ +K ++ +GLD + D + +SGG+K+RV ++V
Sbjct: 114 DPVPLVKKA--------------MEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIV 156
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++L +DE GLD + + +++ + ++++ + D +++L
Sbjct: 157 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLE 214
Query: 419 EGQIVYQGPRDNVLEFFE 436
+G+ V+ G R LE ++
Sbjct: 215 KGKKVFDGTRMEFLEKYD 232
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 11/233 (4%)
Query: 858 DNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV--LAG 915
D+ + + + K G +Q L++VS G + ++G SGAGK+TL+ L
Sbjct: 19 DDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78
Query: 916 RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDT 975
R T EG + + G + + ++ Q + + + S + L ++D
Sbjct: 79 RPT----EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134
Query: 976 KKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035
+ V EL+ L L D P S LS Q++R+ IA L +NP ++ D+ TS
Sbjct: 135 TPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATS 192
Query: 1036 GLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087
LD ++ +++ G T++ H+ +D+ + + + + G +I
Sbjct: 193 ALDPATTRSILELLKDINRRLGLTILLITHE--MDVVKRICDCVAVISNGELI 243
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396
D +SGGQK+RV L VL D+ ++ LD +TT I + LK + L +T+
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
++ + + D + ++S G+++ Q D V E F H P+ F+Q
Sbjct: 218 LL-ITHEMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQSTL 268
Query: 457 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDL 497
E Y R + P +D V + GQ + + L
Sbjct: 269 HLDIPEDYQER----LQAEPFTDCVPMLRLEFTGQSVDAPL 305
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 36/245 (14%)
Query: 848 LPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKT 907
L FQ + F+N+ + D + L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFSY------------ADGRETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 908 TLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967
T++ +L + G I+I G +Q T A + + V +++L++
Sbjct: 95 TILRLLF--RFYDISSGCIRIDGQDISQVTQASLRSHI--------GVVPQDTVLFNDT- 143
Query: 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP-------GVSG--LSTEQRKRLTIA 1018
++ ++ + DEV + ++D+++ P G G LS +++R+ IA
Sbjct: 144 -IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
Query: 1019 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078
++ P II +DE TS LD + ++ V RT + H+ S + D++L
Sbjct: 203 RTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAHRLSTVV--NADQIL 259
Query: 1079 LLKRG 1083
++K G
Sbjct: 260 VIKDG 264
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 53/253 (20%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEFV 242
L+DVS V P + L+GP GAGK+T++ L R +SG I G ++++
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLL-------FRFYDISSGCIRIDGQDISQ-- 120
Query: 243 PQRTCAYISQHDLH-HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
++Q L H + ++T+ F+ + RY + AG + E++
Sbjct: 121 -------VTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT--------AG---NDEVE 161
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVG 359
A +A + + Y T VG+ RG+ SGG+K+RV ++
Sbjct: 162 AAAQAAGIHDAIMAFPEGY-----------RTQVGE---RGLKLSGGEKQRVAIARTILK 207
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
++ +DE ++ LD+S I L ++ ++ L D I+++ +
Sbjct: 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNA----DQILVIKD 263
Query: 420 GQIVYQGPRDNVL 432
G IV +G + +L
Sbjct: 264 GCIVERGRHEALL 276
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--------------RKTGGYIEGDI 926
+ L +VS V G + G +G+GK+TL+ ++AG RK G I +I
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI 80
Query: 927 KIS-GYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
I+ YP++Q RV ++ + + A D D V +
Sbjct: 81 GIAFQYPEDQFFAERV----------------FDEVAF-AVKNFYPDRDPVP---LVKKA 120
Query: 986 MELV--ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
ME V + S D + LS +++R+ IA +V P I+ +DEP GLD
Sbjct: 121 MEFVGLDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175
Query: 1044 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086
++R V G+TV+ H + D +++L++G +V
Sbjct: 176 DLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKV 217
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 107/258 (41%), Gaps = 54/258 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ L++VS ++ L+ G G+GK+TL+ +AG + SG + Y G +
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDG--------E 69
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY---ELLAELSRREKQAGIK---PDP 298
R Y +R R +G+ +Y + AE E +K PD
Sbjct: 70 RKKGY-----------EIR-------RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR 111
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+ +K ++ +GLD + D + +SGG+K+RV ++V
Sbjct: 112 DPVPLVKKA--------------MEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIV 154
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++L +DE GLD + + +++ + ++++ + D +++L
Sbjct: 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLE 212
Query: 419 EGQIVYQGPRDNVLEFFE 436
+G+ V+ G R LE ++
Sbjct: 213 KGKKVFDGTRMEFLEKYD 230
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 115/253 (45%), Gaps = 33/253 (13%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKNQETF 938
+L+ +S PG + ++G SG GKTTL+ LAG + G+I +SG + KN
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 939 ARVS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
R GY Q + P++TVY ++ Y + T + + ++ ++EL + L
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG---NGKGRTAQERQRIEAMLELTGISELAG 133
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV--- 1053
LS Q++R +A L +P +I +DEP S LD + + R +R +
Sbjct: 134 RY-----PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIREDMIAA 184
Query: 1054 --DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVS----- 1106
G++ V H + + D + ++K+G + A P HE ++ + +
Sbjct: 185 LRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASP--HELYRQPADLDAALFIGE 241
Query: 1107 -IPFFPALSVDGS 1118
I F AL+ DG+
Sbjct: 242 GIVFPAALNADGT 254
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 167 LESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR 226
+ +AL + HL S + + +L D+S + P + ++G G GKTTL+ LAG D
Sbjct: 1 MTAALHIGHLSKSFQNTP-VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-- 57
Query: 227 ASGKITYCGHEL-----NEFVPQRTCAYISQHDLHHGEMTVRETLDFS-----GRCLGVG 276
SG+I+ G + N V +R Y+ Q + +TV + + GR
Sbjct: 58 -SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQER 116
Query: 277 TRYELLAELSRREKQAGIKP 296
R E + EL+ + AG P
Sbjct: 117 QRIEAMLELTGISELAGRYP 136
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 47/218 (21%)
Query: 893 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG----DIKISGYPKNQETFARV 941
G AL+G SG GK+T++ DVL G+ T I+G DI + KN ++
Sbjct: 444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT---IDGVDVRDINLEFLRKNVAVVSQ- 499
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-------KSL 994
E L++ + ++ K + +E++ ++ K+L
Sbjct: 500 -----------------EPALFNCTIE--ENISLGKEGITREEMVAACKMANAEKFIKTL 540
Query: 995 NDSMVGLPGVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
+ L G G LS Q++R+ IA LV NP I+ +DE TS LDA + IV + + +
Sbjct: 541 PNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL-DK 599
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
GRT + H+ S I A +L++ + G+V+ G
Sbjct: 600 AAKGRTTIIIAHRLS-TIRNA--DLIISCKNGQVVEVG 634
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 36/203 (17%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIKISGY 931
+++L +S PG AL+G SG GK+T++ D L G +I+G +IK
Sbjct: 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI---FIDGSEIKTLNP 1148
Query: 932 PKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
+ A VS D ++ E+++Y +D M +V E L
Sbjct: 1149 EHTRSQIAIVSQEPTLFD-----CSIAENIIYG--------LDPSSVTM--AQVEEAARL 1193
Query: 992 KSLNDSMVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
++++ + LP G G LS Q++R+ IA LV NP I+ +DE TS LD +
Sbjct: 1194 ANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 1253
Query: 1043 AIVMRTVRNTVDTGRTVVCTIHQ 1065
+V + + GRT + H+
Sbjct: 1254 KVVQEAL-DRAREGRTCIVIAHR 1275
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 47/254 (18%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+ ILK +S V+P + L+GP G GK+T+ +AL + L G+I G E+ P
Sbjct: 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTV-VALLERFYDTL--GGEIFIDGSEIKTLNP 1148
Query: 244 QRT---CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+ T A +SQ + ++ E + + G+ P
Sbjct: 1149 EHTRSQIAIVSQEPTLF-DCSIAENIIY------------------------GLDPSSVT 1183
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEMLV 358
A ++ A + + + L +T VGD RG +SGGQK+R+ LV
Sbjct: 1184 MAQVEEAARLANIHNFIAE-------LPEGFETRVGD---RGTQLSGGQKQRIAIARALV 1233
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
+L +DE ++ LD+ + + + L + +I L D I ++S
Sbjct: 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNA----DCIAVVS 1289
Query: 419 EGQIVYQGPRDNVL 432
G I+ +G ++
Sbjct: 1290 NGTIIEKGTHTQLM 1303
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 101/262 (38%), Gaps = 57/262 (21%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASG 229
+H + V IL+ ++ V + L+G G GK+T++ L LR G
Sbjct: 421 VHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLL-------LRYYDVLKG 473
Query: 230 KITYCG---HELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 286
KIT G ++N ++ A +SQ T+ E + + TR E++A
Sbjct: 474 KITIDGVDVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGKEGI---TREEMVAACK 529
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--IS 344
+ IK P +T+VGD RG +S
Sbjct: 530 MANAEKFIKTLPN------------------------------GYNTLVGD---RGTQLS 556
Query: 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404
GGQK+R+ LV +L +DE ++ LD+ + + + L + T+I+A
Sbjct: 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST 615
Query: 405 PETYDLFDDIILLSEGQIVYQG 426
DL II GQ+V G
Sbjct: 616 IRNADL---IISCKNGQVVEVG 634
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396
D +SGGQK+RV L VL D+ ++ LD +TT I + LK + L +T+
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
++ + + D + ++S G+++ Q D V E F H P+ F+Q
Sbjct: 218 LL-ITHEXDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQSTL 268
Query: 457 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDL 497
E Y R + P +D V + GQ + + L
Sbjct: 269 HLDIPEDYQER----LQAEPFTDCVPXLRLEFTGQSVDAPL 305
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 8/178 (4%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIEGDIKISGYPK 933
G +Q L++VS G + ++G SGAGK+TL+ L R T EG + + G
Sbjct: 37 GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQEL 92
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
+ + ++ Q + + S + L ++D + V EL+ L
Sbjct: 93 TTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 152
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
L D P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 153 LGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 23/160 (14%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGY------PKNQETFAR 940
+ G L+G SG GKTT + +AG T G YIE ++ PK ++
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXV 89
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
Y P+ TVY+++ + LR + KR V E + L EL LN
Sbjct: 90 FQSYA-----LYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTEL--LNRKP-- 140
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 141 ----RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 100/254 (39%), Gaps = 46/254 (18%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT---YCGHELN 239
V +KD+S +K +LLGP G GKTT + +AG L + R I E
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG-LEEPTRGQIYIEDNLVADPEKG 76
Query: 240 EFVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
FVP +R A + Q + TV + + F + V P
Sbjct: 77 VFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKV--------------------PK 116
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
EID ++ VA + LGL T + + R +SGGQ++RV G +
Sbjct: 117 QEIDKRVREVA--------------EXLGL-----TELLNRKPRELSGGQRQRVALGRAI 157
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
+ V DE + LD+ + LK++ L VT I + E D I +
Sbjct: 158 IRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY-VTHDQVEAXTXGDRIAVX 216
Query: 418 SEGQIVYQGPRDNV 431
++G++ G D V
Sbjct: 217 NKGELQQVGTPDEV 230
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 14/186 (7%)
Query: 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYIEGDIKISGYPKN--QETFARVS 942
V + G + ++G +G GK+T + +LAG+ G D I + N Q F ++
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
+ + YV + + + L D + ++EV++ +EL+++ + +
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLEREI--- 156
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1062
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 157 --QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 1063 IHQPSI 1068
H ++
Sbjct: 215 EHDLAV 220
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 28/196 (14%)
Query: 888 GVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYC 945
G + G + ++G +G GKTT + LAG T G IE D+ ++ P Q A G
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKP--QYIKADYEG-- 362
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
TVYE L +L+S+ + E+++ + + L D V+
Sbjct: 363 ----------TVYELLSKIDASKLNSN-------FYKTELLKPLGIIDLYDRE-----VN 400
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS + +R+ IA L+ + I +DEP++ LD V R +R+ + +
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 1066 PSIDIFEAFDELLLLK 1081
+ I D L + +
Sbjct: 461 DVLXIDYVSDRLXVFE 476
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 24/216 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L +SG R G + L+G +GAGK+TL+ AG +G +G I+ +G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 943 GYCEQNDIHSPYVTVYESLLYSA--WLRLSSDVDTKKRKMFVDEVMELVEL-KSLNDSMV 999
+H Y++ ++ ++ W L+ K R +++V + L L S
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 1000 GLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
L G QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
G +V + H + + A LL +GG+ + +G
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L +SG V+ + L+GP GAGK+TL+ AG G I + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTS----GKGSIQFAGQPLEAWSATKL 71
Query: 247 C---AYISQH 253
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 46/207 (22%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L ++ G A +G+SG GK+TL++++ + G I I G+ N + F
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGH--NIKDFLTG 411
Query: 942 S-----GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFV-------DEVMELV 989
S G +Q++I L+S DT K + + +EV+E
Sbjct: 412 SLRNQIGLVQQDNI-----------LFS---------DTVKENILLGRPTATDEEVVEAA 451
Query: 990 ELKSLNDSMVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
++ + +D ++ LP G G LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 452 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
Query: 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPS 1067
+ +I+ + + + RT + H+ S
Sbjct: 512 SESIIQEAL-DVLSKDRTTLIVAHRLS 537
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 52/261 (19%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-- 243
ILKD++ ++ +G G GK+TL + L + D+ SG+I GH + +F+
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTL-INLIPRF-YDV-TSGQILIDGHNIKDFLTGS 412
Query: 244 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ + Q ++ + TV+E + LG +P +
Sbjct: 413 LRNQIGLVQQDNILFSD-TVKENI-----LLG--------------------RPTATDEE 446
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGT 360
++A +A D+ I+ L DT VG+ RG+ SGGQK+R++ + +
Sbjct: 447 VVEAAKMANAH-----DF---IMNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNN 495
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+L +DE ++ LD + +++ + +L ++ T D I+++ G
Sbjct: 496 PPILILDEATSALDLESE----SIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 551
Query: 421 QIVYQGPRDNVLE---FFEHM 438
IV G ++ +EH+
Sbjct: 552 HIVETGTHRELIAKQGAYEHL 572
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 26/233 (11%)
Query: 866 MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD 925
M M+ + V E L +SG R G + L+G +GAGK+TL+ +AG +G +G
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGS 55
Query: 926 IKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSA--WLRLSSDVDTKKRKMFVD 983
I+ +G P + +++ +H Y++ ++ ++ W L+ K R ++
Sbjct: 56 IQFAGQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN 108
Query: 984 EVMELVEL-KSLNDSMVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGL 1037
+V + L L S L G QR RL V + ANP+ ++ +D+P + L
Sbjct: 109 DVAGALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSL 164
Query: 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
D + + + + G +V + H + + A LL +GG+++ +G
Sbjct: 165 DVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L +SG V+ + L+GP GAGK+TL+ +AG G I + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GKGSIQFAGQPLEAWSATKL 71
Query: 247 C---AYISQH 253
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 24/216 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L +SG R G + L+G +GAGK+TL+ AG +G +G I+ +G P + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 943 GYCEQNDIHSPYVTVYESLLYSA--WLRLSSDVDTKKRKMFVDEVMELVEL-KSLNDSMV 999
+H Y++ ++ ++ W L+ K R +++V + L L S
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 1000 GLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
L G QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQ 181
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
G +V + H + + A LL +GG+ + +G
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L +SG V+ + L+GP GAGK+TL+ AG G I + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTS----GKGSIQFAGQPLEAWSATKL 71
Query: 247 C---AYISQH 253
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 52/258 (20%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTT---LMLALAGKLGKDLRASGKITYCGHELNE 240
V +L+ ++ ++P +T L+GP G+GK+T L+ L G L GK
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKP--------- 80
Query: 241 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+PQ Y LH V + GR L Y G+ P +
Sbjct: 81 -LPQYEHRY-----LHRQVAAVGQEPQVFGRSLQENIAY-------------GLTQKPTM 121
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
+ A +G + I GL DT V DE +SGGQ++ V L+
Sbjct: 122 EEITAAAVKSGAHSF--------ISGLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRK 172
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPETYDLFDDII 415
VL +D+ ++ LD+++ Q+ + L + +L +T ++L++ A D I+
Sbjct: 173 PCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA-------DHIL 225
Query: 416 LLSEGQIVYQGPRDNVLE 433
L G I G ++E
Sbjct: 226 FLEGGAIREGGTHQQLME 243
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFA 939
+L ++ RPG +TAL+G +G+GK+T+ +L + TGG + D K +++
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
+V+ ++ + ++ E++ Y T+K M E + +KS S +
Sbjct: 92 QVAAVGQEPQVFGR--SLQENIAYGL---------TQKPTM---EEITAAAVKSGAHSFI 137
Query: 1000 -GLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
GLP S LS QR+ + +A L+ P ++ +D+ TS LDA + V + +
Sbjct: 138 SGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLL 197
Query: 1050 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
+ + V I Q + + E D +L L+ G
Sbjct: 198 YESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 29/217 (13%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET 937
+Q+L ++ PG +TAL+G +G+GK+T+ +L + TGG + + G P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG----KVLLDGEPLVQ-- 85
Query: 938 FARVSGYCEQNDIHSPYVTV-YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
+ + +H+ V E LL+ R + R ++E+ + +D
Sbjct: 86 -------YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 997 SMVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
+ G P G +G LS QR+ + +A L+ P ++ +D TS LDA V R
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 1048 TVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+ + + RTV+ Q + + E +L LK G
Sbjct: 198 LLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 46/256 (17%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+V++L+ ++ + P ++T L+GP G+GK+T+ AL L + GK+ G L ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQP--TGGKVLLDGEPLVQY- 86
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
H LH + VG L R G+ P ++
Sbjct: 87 --------DHHYLHT-------------QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ AVA+ S D+ I G DT VG E +SGGQ++ V L+
Sbjct: 126 -ITAVAM----ESGAHDF---ISGFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPR 176
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPETYDLFDDIILL 417
+L +D ++ LD+ ++ + L + +L +T ++L + A I+ L
Sbjct: 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------HHILFL 229
Query: 418 SEGQIVYQGPRDNVLE 433
EG + QG ++E
Sbjct: 230 KEGSVCEQGTHLQLME 245
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 26/233 (11%)
Query: 866 MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD 925
M M+ + V E L +SG R G + L+G +GAGK+TL+ +AG +G +G
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGS 55
Query: 926 IKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSA--WLRLSSDVDTKKRKMFVD 983
I+ +G P + +++ +H Y++ ++ ++ W L+ K R ++
Sbjct: 56 IQFAGQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN 108
Query: 984 EVMELVEL-KSLNDSMVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGL 1037
+V + L L S L G QR RL V + ANP+ ++ +D+P L
Sbjct: 109 DVAGALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSL 164
Query: 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
D + + + + G +V + H + + A LL +GG+++ +G
Sbjct: 165 DVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L +SG V+ + L+GP GAGK+TL+ +AG G I + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GKGSIQFAGQPLEAWSATKL 71
Query: 247 C---AYISQH 253
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 113/255 (44%), Gaps = 43/255 (16%)
Query: 842 TNRGMILPFQPLSLTFDNMS--YFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899
+ + LP S++F+N+ YF E+ +L V+ +PG L A++
Sbjct: 329 ADNALALPNVEGSVSFENVEFRYF-------------ENTDPVLSGVNFSVKPGSLVAVL 375
Query: 900 GVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957
G +G+GK+TLM+++ G +E D K ++ +S ++ + S T+
Sbjct: 376 GETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG--TI 433
Query: 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP---------GVSGLS 1008
E+L W R D DE++E ++ ++D ++ LP G S
Sbjct: 434 KENL---KWGR-EDATD--------DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
Q++RL+IA LV P ++ +D+ TS +D ++ ++ T + T P+
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTA 541
Query: 1069 DIFEAFDELLLLKRG 1083
+ D++L+L G
Sbjct: 542 LL---ADKILVLHEG 553
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 111/249 (44%), Gaps = 41/249 (16%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+L V+ VKP + +LG G+GK+TLM L +L R G++ E++E + R
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLM-NLIPRLIDPER--GRV-----EVDE-LDVR 408
Query: 246 TCAYISQHDLH-HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
T + DL H +ET+ FSG + +E + D D +
Sbjct: 409 T---VKLKDLRGHISAVPQETVLFSG---------------TIKENLKWGREDATDDEIV 450
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
+A +A + D+ I+ L D+ V + R SGGQK+R++ LV VL
Sbjct: 451 EAAKIAQ-----IHDF---IISLPEGYDSRV-ERGGRNFSGGQKQRLSIARALVKKPKVL 501
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+D+ ++ +D T +I LK+ +I Q P T L D I++L EG++
Sbjct: 502 ILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT---QKIP-TALLADKILVLHEGKVAG 557
Query: 425 QGPRDNVLE 433
G +LE
Sbjct: 558 FGTHKELLE 566
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 26/218 (11%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKT-GGYIEGDIK 927
G+++ L H VS G AL+G SG+GK+T+ DV +G G+ D K
Sbjct: 353 GKEKPALSH-VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411
Query: 928 ISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSD-VDTKKRKMFVDEVM 986
++ ++ FA VS ++H T+ ++ Y+A + + ++ R+ M
Sbjct: 412 LTNLRRH---FALVS-----QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQA---HAM 460
Query: 987 ELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
E +E + D+++G G S LS QR+R+ IA L+ + ++ +DE TS LD + +
Sbjct: 461 EFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI 519
Query: 1046 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+ + + +TV+ H+ S E DE+L++ G
Sbjct: 520 QAAL-DELQKNKTVLVIAHRLS--TIEQADEILVVDEG 554
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI 391
DT++G E +SGGQ++RV L+ A VL +DE ++ LD+ + I L ++
Sbjct: 471 DTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432
V +I L T + D+I+++ EG+I+ +G ++L
Sbjct: 530 KTVLVIAHRL----STIEQADEILVVDEGEIIERGRHADLL 566
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 29/217 (13%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET 937
+Q+L ++ PG +TAL+G +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ-- 85
Query: 938 FARVSGYCEQNDIHSPYVTV-YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
+ + +H+ V E LL+ R + R ++E+ + +D
Sbjct: 86 -------YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 997 SMVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
+ G P G +G L+ QR+ + +A L+ P ++ +D TS LDA V R
Sbjct: 138 FISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 1048 TVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+ + + RTV+ Q + + E +L LK G
Sbjct: 198 LLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 106/256 (41%), Gaps = 46/256 (17%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+V++L+ ++ + P ++T L+GP G+GK+T+ AL L + GK+ G L ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQP--TGGKVLLDGEPLVQY- 86
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
H LH + VG L R G+ P ++
Sbjct: 87 --------DHHYLHT-------------QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ AVA+ S D+ I G DT VG E ++ GQ++ V L+
Sbjct: 126 -ITAVAM----ESGAHDF---ISGFPQGYDTEVG-ETGNQLAVGQRQAVALARALIRKPR 176
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPETYDLFDDIILL 417
+L +D ++ LD+ ++ + L + +L +T ++L + A I+ L
Sbjct: 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------HHILFL 229
Query: 418 SEGQIVYQGPRDNVLE 433
EG + QG ++E
Sbjct: 230 KEGSVCEQGTHLQLME 245
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 33/231 (14%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETF 938
+ L VS G +T ++G +G+GK+TL++V+ G EG + +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 939 ARVSGYCEQNDIHSPY----VTVYESLL---------------YSAWLRLSSDVDTKKRK 979
A + Y +P +TV E+LL Y W+ ++ K K
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 980 MFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
++E ++L L D G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 137 -----ILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
A + V G T + H+ +DI + + L + G++I G
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 91/256 (35%), Gaps = 55/256 (21%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ L VS V +TL++GP G+GK+TL+ + G L D G++ + ++ P
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77
Query: 245 RTCAY----ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
Y Q EMTV E L C G P
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG---------------------ESPLN 116
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
F K +E +L+ L L D G+ +SGGQ K V G L+
Sbjct: 117 SLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTN 171
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYDL 410
++ MDE G+ I + ++ H LD+ + +
Sbjct: 172 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL------------NY 219
Query: 411 FDDIILLSEGQIVYQG 426
D + ++ GQI+ +G
Sbjct: 220 IDHLYVMFNGQIIAEG 235
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ++RV+ L +VL DE ++ LD ++ + ++Q+ + +V +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTH 211
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
+ +I L +G+I +G + V F P+ + FL+
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 254
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 96/195 (49%), Gaps = 11/195 (5%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCE--QND 949
G AL+G SG+GK+T+ ++ + EG+I + G+ + T A + +
Sbjct: 368 AGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQN 425
Query: 950 IHSPYVTVYESLLYSAWLRLSSD-VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
+H TV ++ Y+ + S + ++ R + + + ++ + D+++G GV LS
Sbjct: 426 VHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVIGENGVL-LS 482
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS- 540
Query: 1069 DIFEAFDELLLLKRG 1083
E DE+++++ G
Sbjct: 541 -TIEKADEIVVVEDG 554
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 112/257 (43%), Gaps = 48/257 (18%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R V L++++ + + L+G G+GK+T+ + D G+I GH+L E+
Sbjct: 354 RDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGEILMDGHDLREY 410
Query: 242 VP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ A +SQ ++H TV + ++ R E + SR + + +
Sbjct: 411 TLASLRNQVALVSQ-NVHLFNDTVANNIAYA--------RTE---QYSREQIEEAARMAY 458
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEM 356
+D K +D DT++G+ G+ SGGQ++R+
Sbjct: 459 AMDFINK---------------------MDNGLDTVIGEN---GVLLSGGQRQRIAIARA 494
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L+ + +L +DE ++ LD+ + I L ++ +I L T + D+I++
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL----STIEKADEIVV 550
Query: 417 LSEGQIVYQGPRDNVLE 433
+ +G IV +G +++LE
Sbjct: 551 VEDGVIVERGTHNDLLE 567
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 17/192 (8%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG----YPKNQE 936
++L +S + G +++G SG+GK+TL+ +L EG + + G Y +E
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 937 TF---ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
R G+ Q P +T E+++ + K+R ++ L EL
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSEL-G 129
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L D + P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 130 LGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 1054 DTGRTVVCTIHQ 1065
+ G ++V H+
Sbjct: 188 EGGTSIVMVTHE 199
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 44/210 (20%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R ILK +S VK ++G G+GK+TL+ L G L D GK+ G E++
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLL--DAPTEGKVFLEGKEVD-- 69
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE-LLAELSRREKQAGIKPDPEI 300
Y ++ +L R LG ++ L+ EL+ E I P
Sbjct: 70 -------YTNEKELSL----------LRNRKLGFVFQFHYLIPELTALENV--IVP---- 106
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG---ISGGQKKRVTTGEML 357
M + +E +Y+L LGL GD++ R +SGG+++RV L
Sbjct: 107 ---MLKMGKPKKEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARAL 155
Query: 358 VGTANVLYMDEISTGLDSSTTFQICK-FLK 386
+L+ DE + LDS+ T ++ FLK
Sbjct: 156 ANEPILLFADEPTGNLDSANTKRVMDIFLK 185
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 33/231 (14%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETF 938
+ L VS G +T ++G +G+GK+TL++V+ G EG + +
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 939 ARVSGYCEQNDIHSPY----VTVYESLL---------------YSAWLRLSSDVDTKKRK 979
A + Y +P +TV E+LL Y W+ ++ K K
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 980 MFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
++E ++L L D G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 137 -----ILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
A + V G T + H+ +DI + + L + G++I G
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 95/256 (37%), Gaps = 55/256 (21%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ L VS V +TL++GP G+GK+TL+ + G L D G++ + ++ P
Sbjct: 21 KALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77
Query: 245 RTCAY----ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
Y Q EMTV E L L+ E++ E P
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENL--------------LIGEINPGE-------SPLN 116
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
F K +E +L+ L L D G+ +SGGQ K V G L+
Sbjct: 117 SLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTN 171
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYDL 410
++ MDE G+ I + ++ H LD+ + +
Sbjct: 172 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL------------NY 219
Query: 411 FDDIILLSEGQIVYQG 426
D + ++ GQI+ +G
Sbjct: 220 IDHLYVMFNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 33/231 (14%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETF 938
+ L VS G +T ++G +G+GK+TL++V+ G EG + +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 939 ARVSGYCEQNDIHSPY----VTVYESLL---------------YSAWLRLSSDVDTKKRK 979
A + Y +P +TV E+LL Y W+ ++ K K
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 980 MFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
++E ++L L D G LS Q K + I L+ NP +I MD+P +G+
Sbjct: 137 -----ILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAP 186
Query: 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
A + V G T + H+ +DI + + L + G++I G
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 95/256 (37%), Gaps = 55/256 (21%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ L VS V +TL++GP G+GK+TL+ + G L D G++ + ++ P
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77
Query: 245 RTCAY----ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
Y Q EMTV E L L+ E++ E P
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENL--------------LIGEINPGE-------SPLN 116
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
F K +E +L+ L L D G+ +SGGQ K V G L+
Sbjct: 117 SLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTN 171
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYDL 410
++ MD+ G+ I + ++ H LD+ + +
Sbjct: 172 PKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL------------NY 219
Query: 411 FDDIILLSEGQIVYQG 426
D + ++ GQI+ +G
Sbjct: 220 IDHLYVMFNGQIIAEG 235
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 17/198 (8%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCE--QND 949
G AL+G SG+GK+T+ ++ + EG I + G+ + T A + +
Sbjct: 368 AGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 950 IHSPYVTVYESLLYSAWLRLSSD-VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
+H TV ++ Y+ S + ++ R + + + ++ + D+++G GV LS
Sbjct: 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN--KMDNGLDTIIGENGVL-LS 482
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQ 1065
QR+R+ IA L+ + I+ +DE TS LD + R ++ +D RT + H+
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDELQKNRTSLVIAHR 538
Query: 1066 PSIDIFEAFDELLLLKRG 1083
S E DE+++++ G
Sbjct: 539 LS--TIEQADEIVVVEDG 554
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 108/256 (42%), Gaps = 48/256 (18%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R V L++++ + + L+G G+GK+T+ + D G I GH+L E+
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREY 410
Query: 242 VP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ A +SQ ++H TV + ++ R E E SR + + +
Sbjct: 411 TLASLRNQVALVSQ-NVHLFNDTVANNIAYA--------RTE---EYSREQIEEAARMAY 458
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEM 356
+D K +D DT++G+ G+ SGGQ++R+
Sbjct: 459 AMDFINK---------------------MDNGLDTIIGEN---GVLLSGGQRQRIAIARA 494
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L+ + +L +DE ++ LD+ + I L ++ +I L T + D+I++
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL----STIEQADEIVV 550
Query: 417 LSEGQIVYQGPRDNVL 432
+ +G IV +G +L
Sbjct: 551 VEDGIIVERGTHSELL 566
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 17/156 (10%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKNQETFARVSGYCEQNDIHSPY 954
L+G +GAGK+ ++++AG G+++++G P E R G+ Q+ P+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPER--RGIGFVPQDYALFPH 84
Query: 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKR 1014
++VY ++ Y LR V+ +R + E + + L + LS +R+R
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR--------LSGGERQR 134
Query: 1015 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGG+++RV LV +L +DE + +D T + + L+ + DV I+ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTH 185
Query: 403 PAPETYDLFDDIILLSEGQIVYQG 426
E L D++ ++ G+IV +G
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG 209
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF 938
+L ++S PG L+G +G+GK+TL+ EG+I+I G + E +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
+ G Q + ++S R + D + + +V + V L+S+ +
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 999 VG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
G + G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081
++C + I+ D+ L+++
Sbjct: 202 FADCTVILC---EARIEAMLECDQFLVIE 227
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 28/198 (14%)
Query: 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYPKNQETFARVSGY 944
+G + G + ++G +G GKTT +L G T G + + +I Y K Q F G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGT 346
Query: 945 CEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGV 1004
+Q ++ ++L S+W F +EV + + L L +S V
Sbjct: 347 VQQYLENAS----KDALSTSSW--------------FFEEVTKRLNLHRLLES-----NV 383
Query: 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI- 1063
+ LS + ++L IA L + +D+P+S LD IV + ++ + V I
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 1064 HQPSIDIFEAFDELLLLK 1081
H SI + A D +++ K
Sbjct: 444 HDLSIHDYIA-DRIIVFK 460
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 24/183 (13%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSG---YCEQ 947
+ + ++G +G GKTT++ +LAG + + + K+ E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 948 NDIHSPYVTVYESLLY----SAWLR-----LSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
+++S + + + Y S +L+ + + +D + +K DEV EL+ + +L +
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
+ GL +RL +A L+ + D+P+S LD R + + +R +
Sbjct: 136 ANILSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYV 190
Query: 1059 VVC 1061
+V
Sbjct: 191 IVV 193
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 15/184 (8%)
Query: 883 LHSVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQE 936
+H++ G+ G + L+G +GAGKTT + +AG + G I I+ P +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
++ E I P +TVYE+L A+ R D + KR + + + L L +
Sbjct: 79 NRXGIALVPEGRRIF-PELTVYENLXXGAYNR--KDKEGIKRDL--EWIFSL--FPRLKE 131
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+ L G LS +++ L I L + P ++ DEP+ GL + V ++ G
Sbjct: 132 RLKQLGGT--LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 1057 RTVV 1060
T++
Sbjct: 190 TTIL 193
Score = 33.5 bits (75), Expect = 0.70, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 107/259 (41%), Gaps = 56/259 (21%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS-GKITYCGHELN-- 239
++ +K + V ++ L+G GAGKTT + A+AG +RA GKI + G ++
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL----VRAQKGKIIFNGQDITNK 73
Query: 240 --EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ + A + + E+TV E L +R++K+ GIK D
Sbjct: 74 PAHVINRXGIALVPEGRRIFPELTVYENL--------------XXGAYNRKDKE-GIKRD 118
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
E ++ ++ +E LK LG +SGG+++ + G L
Sbjct: 119 LE---WIFSLFPRLKER-------LKQLG--------------GTLSGGEQQXLAIGRAL 154
Query: 358 VGTANVLYMDEISTGLDS---STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414
+L DE S GL S F++ + + Q + T I+ + Q A +
Sbjct: 155 XSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ-----EGTTILLVEQNALGALKVAHYG 209
Query: 415 ILLSEGQIVYQGPRDNVLE 433
+L GQIV +G +L+
Sbjct: 210 YVLETGQIVLEGKASELLD 228
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 100/251 (39%), Gaps = 53/251 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR- 245
L ++S V+ ++LGP GAGKT + +AG D SG+I G ++ + P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
A++ Q+ M V++ L+F R + DP K
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKI--------------------KDP------K 106
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG---ISGGQKKRVTTGEMLVGTAN 362
V LD D + + R +SGG+++RV LV
Sbjct: 107 RV-------------------LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
+L +DE + LD T + L ++H + ++ + E + D I ++ +G++
Sbjct: 148 ILLLDEPLSALDPRTQENAREML-SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206
Query: 423 VYQGPRDNVLE 433
+ G + + E
Sbjct: 207 IQVGKPEEIFE 217
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 29/171 (16%)
Query: 898 LMGVSGAGKTTLMDVLAGRKT--GGYIEGDIK-ISGYPKNQETFARVSGYCEQNDIHSPY 954
++G +GAGKT ++++AG G I D K ++ + A + QN P+
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA----FVYQNYSLFPH 86
Query: 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKR 1014
+ V ++L + ++ K K +D +L L+ + + L G +++R
Sbjct: 87 MNVKKNLEFGMRMK-----KIKDPKRVLDTARDLKIEHLLDRNPLTLSG------GEQQR 135
Query: 1015 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
+ +A LV NP I+ +DEP S LD R T + R ++ +H+
Sbjct: 136 VALARALVTNPKILLLDEPLSALDPR-----------TQENAREMLSVLHK 175
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 61/256 (23%), Positives = 105/256 (41%), Gaps = 54/256 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
++ DVS + M ++GP GAGK+TL+ L G L + G+ G LN + P+
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP---SHGECHLLGQNLNSWQPKA 82
Query: 245 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
RT A + Q+ +V E + GR G++ R+ Q ++ A
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVIQM-GRAPYGGSQ-------DRQALQ-------QVMA 127
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG--- 359
+A+A + DY R +SGG+++RV +L
Sbjct: 128 QTDCLALAQR------DY--------------------RVLSGGEQQRVQLARVLAQLWQ 161
Query: 360 ---TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
T L++DE ++ LD + L+Q+ + + +L D I+L
Sbjct: 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRIML 220
Query: 417 LSEGQIVYQGPRDNVL 432
L++G++V G + VL
Sbjct: 221 LAQGKLVACGTPEEVL 236
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 25/221 (11%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF 938
L++ VS G + A++G +GAGK+TL+ +L G + + G+ + G N +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH--GECHLLGQNLNSWQPKAL 83
Query: 939 ARVSGYCEQ-NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
AR Q +++ P+ + A S D ++ M + + L + D
Sbjct: 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ----RDY 139
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
V LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 140 RV-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ 192
Query: 1052 -TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
T V C +H ++ A D ++LL +G V P
Sbjct: 193 LTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQGKLVACGTP 232
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 21/191 (10%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI 950
RPG + L+G +G GK+T + +LAG++ D P+ QE G +++
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD----DPPEWQEIIKYFRG----SEL 152
Query: 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL---KSLND-----SMVGLP 1002
+ + + E + + D + K V +V EL++L KS D ++ L
Sbjct: 153 QNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE 212
Query: 1003 GV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
V LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 213 NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1058 TVVCTIHQPSI 1068
V+C H S+
Sbjct: 273 YVICVEHDLSV 283
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 29/196 (14%)
Query: 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA 914
L D+ S P+ KT+G +L+ G F + +MG +G GKTTL+ +LA
Sbjct: 345 LQNDSASRAFSYPSLKKTQGDF-----VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLA 399
Query: 915 GRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVD 974
G + P + +++ + I + L +
Sbjct: 400 G-------------ALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFK---------- 436
Query: 975 TKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034
K R F++ + +K L + V LS + +R+ I + L I +DEP+
Sbjct: 437 -KIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495
Query: 1035 SGLDARAAAIVMRTVR 1050
+ LD+ I + +R
Sbjct: 496 AYLDSEQRIICSKVIR 511
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 32/197 (16%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
++L +S G + L+G +GAGKTT + + IS K
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRI---------------ISTLIKPSSGIVT 73
Query: 941 VSGYCEQNDIHSPY------------VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
V G +N + P+ Y ++ +LR + + V
Sbjct: 74 VFG---KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 130
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
E+ L + + VS S ++L IA L+ NP + +DEPTSGLD A V +
Sbjct: 131 TEIAGLGEKI--KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 188
Query: 1049 VRNTVDTGRTVVCTIHQ 1065
++ G T++ + H
Sbjct: 189 LKQASQEGLTILVSSHN 205
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 11/226 (4%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--KNQETFA 939
+L ++ +PG AL+G +G+GKTT++++L + G I + G K + +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R S D TV E+L Y ++ + D ++ L ++++
Sbjct: 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIK--HLPEGYETVL 485
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
G LS QR+ L I +ANP I+ +DE TS +D + + + ++ G+T
Sbjct: 486 TDNG-EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTS 543
Query: 1060 VCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEV 1105
+ H+ ++ + D L+++ R G ++ G K Y+E+
Sbjct: 544 IIIAHR--LNTIKNAD-LIIVLRDGEIVEMGKHDELIQKRGFYYEL 586
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 46/257 (17%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
+LKD++ +KP + L+GP G+GKTT++ L D G+I G ++ +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSS 426
Query: 245 -RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
R+ I D TV+E L + G E + E ++ D F
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNP----GATDEEIKEAAKLTHS---------DHF 473
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+K + G ET L + G+++ S GQ++ + + +
Sbjct: 474 IKHLP-EGYETVLTDN----------------GEDL----SQGQRQLLAITRAFLANPKI 512
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L +DE ++ +D+ T I + +++ ++I+A + DL II+L +G+IV
Sbjct: 513 LILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHRLNTIKNADL---IIVLRDGEIV 568
Query: 424 YQGPRDNVLEFFEHMGF 440
G D E + GF
Sbjct: 569 EMGKHD---ELIQKRGF 582
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 17/150 (11%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH- 951
L G++GAGKTTL+++L + G + + G + ET + G+ + +
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEK 109
Query: 952 -SPYVTVYESLLYSAW--LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
V + ++ A+ + + D+D + R ++++LV + +G LS
Sbjct: 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGXSAKAQQYIGY-----LS 163
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
T +++R+ IA L P ++ +DEP +GLD
Sbjct: 164 TGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 51/262 (19%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM-------LALAGKLGKDLRASGKITY 233
K+ ILK +S + +L G GAGKTTL+ A +G + + GK+ Y
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 234 CGHELNEFVPQRTCAYISQ---HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
+ + + ++S GE + + + + +GV Y+ + + R E
Sbjct: 91 SAETVRQHI-----GFVSHSLLEKFQEGERVIDVVISGAFKSIGV---YQDIDDEIRNEA 142
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350
+LK++G A +G +S G+K+R
Sbjct: 143 HQ----------------------------LLKLVGXSAKAQQYIG-----YLSTGEKQR 169
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410
V L G VL +DE + GLD + L + + + E
Sbjct: 170 VXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFIEEITAN 229
Query: 411 FDDIILLSEGQIVYQGPRDNVL 432
F I+LL +GQ + QG +++L
Sbjct: 230 FSKILLLKDGQSIQQGAVEDIL 251
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 25/211 (11%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV---MELVELKSLNDSM 998
S +C Q P T+ E++++ D + K V ++ + ++++
Sbjct: 102 S-FCSQFSWIMP-GTIKENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
+G GV+ LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089
+ + ++ D++L+L +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD---LRASGKITYCGH 236
+LK+++ ++ M + G G+GKT+L++ + G+L ++ SG++++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 25/211 (11%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV---MELVELKSLNDSM 998
S +C Q P T+ E++++ D + K V ++ + ++++
Sbjct: 102 S-FCSQFSWIMP-GTIKENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
+G GV+ LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089
+ + ++ D++L+L +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD---LRASGKITYCGH 236
+LK+++ ++ M + G G+GKT+L++ + G+L ++ SG++++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 24/199 (12%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS 952
G L A+ G +GAGKT+L+ ++ G EG IK SG R+S +C QN
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RIS-FCSQNSWIM 111
Query: 953 PYVTVYESLLYSAW--LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010
P T+ E+++ ++ R S + K +++ + E D++V G LS
Sbjct: 112 P-GTIKENIIGVSYDEYRYRSVI---KACQLEEDISKFAE----KDNIVLGEGGITLSGG 163
Query: 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1070
QR R+++A + + + +D P LD + + + +T + + ++
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK--MEH 221
Query: 1071 FEAFDELLLLKRGGRVIYA 1089
+ D++L+L G Y
Sbjct: 222 LKKADKILILHEGSSYFYG 240
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 106
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 24/199 (12%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS 952
G L A+ G +GAGKT+L+ ++ G EG IK SG R+S +C QN
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RIS-FCSQNSWIM 111
Query: 953 PYVTVYESLLYSAW--LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010
P T+ E+++ ++ R S + K +++ + E D++V G LS
Sbjct: 112 P-GTIKENIIGVSYDEYRYRSVI---KACQLEEDISKFAE----KDNIVLGEGGITLSGG 163
Query: 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1070
QR R+++A + + + +D P LD + + + +T + + ++
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK--MEH 221
Query: 1071 FEAFDELLLLKRGGRVIYA 1089
+ D++L+L G Y
Sbjct: 222 LKKADKILILHEGSSYFYG 240
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 106
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 26/141 (18%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957
+ G +G GK+TLM +A + + G+P +E + Y E DI +
Sbjct: 466 ICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR---TVYVEH-DIDGTHSDT 511
Query: 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTI 1017
S+L S V TK+ D+++E D M+ +P +S LS + +L +
Sbjct: 512 --SVLD---FVFESGVGTKE--AIKDKLIEF----GFTDEMIAMP-ISALSGGWKMKLAL 559
Query: 1018 AVELVANPSIIFMDEPTSGLD 1038
A ++ N I+ +DEPT+ LD
Sbjct: 560 ARAVLRNADILLLDEPTNHLD 580
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 968 RLSSDVDTKK-------RKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVE 1020
++ ++VD K+ R + E+ E + L+ +V + GLS Q+ +L +A
Sbjct: 856 KMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAG 915
Query: 1021 LVANPSIIFMDEPTSGLD 1038
P +I +DEPT+ LD
Sbjct: 916 TWQRPHLIVLDEPTNYLD 933
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 110/300 (36%), Gaps = 98/300 (32%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTC--AYISQHDLHHGE 259
++GP GAGK+TL+ L G+L L SG++ HE C AYI QH H E
Sbjct: 704 VIGPNGAGKSTLINVLTGEL---LPTSGEVYT--HE--------NCRIAYIKQHAFAHIE 750
Query: 260 MTV-----------------RETLDFSGRCLGV-------------GTRYELLAELSRRE 289
+ RET+D + R + GT + SRR+
Sbjct: 751 SHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRK 810
Query: 290 --------------KQAGIKPD--------------------------PEIDAFMKAVAV 309
+ G+K + E+D MK
Sbjct: 811 FKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVD--MKEALA 868
Query: 310 AGQETSLVTDYV---LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366
+GQ L + +LGLD +V RG+SGGQK ++ +++ +
Sbjct: 869 SGQFRPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVL 925
Query: 367 DEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
DE + LD + + K LK+ ++ + A T +L +++ + +G++ G
Sbjct: 926 DEPTNYLDRDSLGALSKALKEF-----EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 94/211 (44%), Gaps = 26/211 (12%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV---MELVELKSLNDSM 998
S +C Q P T+ E+++ ++ D + K V ++ + ++++
Sbjct: 102 S-FCSQFSWIMP-GTIKENIIGVSY-------DEYRYKSVVKACQLQQDITKFAEQDNTV 152
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
+G GV+ LS QR R+++A + + + +D P LD V + + +T
Sbjct: 153 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 211
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089
+ + ++ D++L+L +G Y
Sbjct: 212 RILVTSK--MEHLRKADKILILHQGSSYFYG 240
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD---LRASGKITYCGH 236
+LK+++ ++ M + G G+GKT+L++ + G+L ++ SG++++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 19/208 (9%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG R+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
S +C Q P T+ E++++ +S D + + ++ E + + D++V
Sbjct: 84 S-FCSQFSWIMP-GTIKENIIFG----VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 137
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 197
Query: 1062 TIHQPSIDIFEAFDELLLLKRGGRVIYA 1089
+ ++ + D++L+L G Y
Sbjct: 198 VTSK--MEHLKKADKILILHEGSSYFYG 223
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 70/250 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGHELNEF 241
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C + +
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFC-SQFSWI 92
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+P T++E + F G Y+ E R + + +I
Sbjct: 93 MPG----------------TIKENIIF-------GVSYD---EYRYRSVIKACQLEEDIS 126
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
F + D +V E +SGGQ+ R++ + A
Sbjct: 127 KFAE-------------------------KDNIVLGEGGITLSGGQRARISLARAVYKDA 161
Query: 362 NVLYMDEISTGLDSSTTFQI-----CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
++ +D LD T +I CK + IL VT + L+ A D I++
Sbjct: 162 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILI 213
Query: 417 LSEGQIVYQG 426
L EG + G
Sbjct: 214 LHEGSSYFYG 223
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 106
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 19/208 (9%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
S +C Q P T+ E+++ +S D + + ++ E + + D++V
Sbjct: 102 S-FCSQFSWIMP-GTIKENIIAG----VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 156 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 1062 TIHQPSIDIFEAFDELLLLKRGGRVIYA 1089
+ ++ + D++L+L G Y
Sbjct: 216 VTSK--MEHLKKADKILILHEGSSYFYG 241
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 106
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 91/208 (43%), Gaps = 19/208 (9%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG R+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
S +C Q P T+ E++++ +S D + + ++ E + + D++V
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFG----VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061
G LS Q+ ++++A + + + +D P LD + + + +T +
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 1062 TIHQPSIDIFEAFDELLLLKRGGRVIYA 1089
+ ++ + D++L+L G Y
Sbjct: 216 VTSK--MEHLKKADKILILHEGSSYFYG 241
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 106
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 24/210 (11%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L ++ G L A+ G +GAGKT+L+ ++ G EG IK SG F+ +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 110
Query: 942 -SGYCEQNDIHSPYVTV-YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
G ++N I Y Y S++ + L +++ + E D++V
Sbjct: 111 MPGTIKENIIGVSYDEYRYRSVIKACQLE--------------EDISKFAE----KDNIV 152
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
G LS Q+ ++++A + + + +D P LD + + + +T
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1060 VCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089
+ + ++ + D++L+L G Y
Sbjct: 213 ILVTSK--MEHLKKADKILILHEGSSYFYG 240
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 70/250 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGHELNEF 241
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C + +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFC-SQFSWI 80
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+P T++E + F G Y+ E R + + +I
Sbjct: 81 MPG----------------TIKENIIF-------GVSYD---EYRYRSVIKACQLEEDIS 114
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
F + D +V E +SGGQ+ R++ + A
Sbjct: 115 KFAE-------------------------KDNIVLGEGGITLSGGQRARISLARAVYKDA 149
Query: 362 NVLYMDEISTGLDSSTTFQI-----CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
++ +D LD T +I CK + IL VT + L+ A D I++
Sbjct: 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILI 201
Query: 417 LSEGQIVYQG 426
L EG + G
Sbjct: 202 LHEGSSYFYG 211
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 19/197 (9%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS 952
G L A+ G +GAGKT+L+ ++ G EG IK SG R+S +C Q
Sbjct: 34 GQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RIS-FCSQFSWIM 81
Query: 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012
P T+ E++++ +S D + + ++ E + + D++V G LS QR
Sbjct: 82 PG-TIKENIIFG----VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 136
Query: 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1072
R+++A + + + +D P LD + + + +T + + ++ +
Sbjct: 137 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK--MEHLK 194
Query: 1073 AFDELLLLKRGGRVIYA 1089
D++L+L G Y
Sbjct: 195 KADKILILHEGSSYFYG 211
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 999 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1056 GRTVVCTIHQPSIDIFEAFDELLLL-----KRGGRVIYAG 1090
G TV+ H ++D+ + D ++ L RGG+++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 852 PLSLTFDNMS--YFVDMPAEMKT------EGVGEDRLQLLHSVSGVFRPGVLTALMGVSG 903
P SLT +S F+ +PAE + E VG R L +VS G A+ GVSG
Sbjct: 602 PNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGA-REHNLKNVSVKIPLGTFVAVTGVSG 660
Query: 904 AGKTTLMD 911
+GK+TL++
Sbjct: 661 SGKSTLVN 668
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 92/211 (43%), Gaps = 25/211 (11%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV---MELVELKSLNDSM 998
S +C Q P T+ E+++ D + K V ++ + ++++
Sbjct: 102 S-FCSQFSWIMP-GTIKENIIRGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
+G GV+ LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089
+ + ++ D++L+L +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD---LRASGKITYCGH 236
+LK+++ ++ M + G G+GKT+L++ + G+L ++ SG++++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
R LL GPPG GKT L LA+A +LG K+ +C
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELG------SKVPFC 94
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 92/211 (43%), Gaps = 25/211 (11%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV---MELVELKSLNDSM 998
S +C Q P T+ E+++ D + K V ++ + ++++
Sbjct: 102 S-FCSQFSWIMP-GTIKENIISGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
+G GV+ LS QR R+++A + + + +D P LD V + + +T
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089
+ + ++ D++L+L +G Y
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD---LRASGKITYCGH 236
+LK+++ ++ M + G G+GKT+L++ + G+L ++ SG++++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 999 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1056 GRTVVCTIHQPSIDIFEAFDELLLL-----KRGGRVIYAG 1090
G TV+ H ++D+ + D ++ L RGG+++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 852 PLSLTFDNMS--YFVDMPAEMKT------EGVGEDRLQLLHSVSGVFRPGVLTALMGVSG 903
P SLT +S F+ +PAE + E VG R L +VS G A+ GVSG
Sbjct: 602 PNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGA-REHNLKNVSVKIPLGTFVAVTGVSG 660
Query: 904 AGKTTLMD 911
+GK+TL++
Sbjct: 661 SGKSTLVN 668
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 999 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 537 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 1056 GRTVVCTIHQPSIDIFEAFDELLLL-----KRGGRVIYAG 1090
G TV+ H ++D+ + D ++ L RGG+++ G
Sbjct: 596 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 852 PLSLTFDNMS--YFVDMPAEMKT------EGVGEDRLQLLHSVSGVFRPGVLTALMGVSG 903
P SLT +S F+ +PAE + E VG R L +VS G A+ GVSG
Sbjct: 300 PNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGA-REHNLKNVSVKIPLGTFVAVTGVSG 358
Query: 904 AGKTTLMD 911
+GK+TL++
Sbjct: 359 SGKSTLVN 366
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.0 bits (84), Expect = 0.069, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
R LL GPPG GKT L LA+A +LG K+ +C
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGS------KVPFC 108
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 76
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV-SGYCEQNDIH 951
G L A+ G +GAGKT+L+ ++ G EG IK SG F+ + G ++N I
Sbjct: 34 GQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWIMPGTIKENIIG 91
Query: 952 SPYVTV-YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010
Y Y S++ + +L D+ K ++ ++G G++ LS
Sbjct: 92 VSYDEYRYRSVIKAC--QLEEDISKFAEK---------------DNIVLGEGGIT-LSGG 133
Query: 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1070
QR R+++A + + + +D P LD + + + +T + + ++
Sbjct: 134 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK--MEH 191
Query: 1071 FEAFDELLLLKRGGRVIYA 1089
+ D++L+L G Y
Sbjct: 192 LKKADKILILHEGSSYFYG 210
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 46/204 (22%)
Query: 927 KISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKR-------- 978
K GY K++ +F G CE YV + +L+ + + DV KR
Sbjct: 698 KARGYNKSRFSFNLKGGRCEACQGQG-YVKI--EMLFLPDVYVECDVCKGKRYNRETLEI 754
Query: 979 -----------KMFVDEVMELVE--------LKSLNDS-----MVGLPGVSGLSTEQRKR 1014
M VDE +E + L+ L+D +G P + LS + +R
Sbjct: 755 TYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATT-LSGGEAQR 813
Query: 1015 LTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1071
+ +A EL + + +DEPT GL ++ + VD G TV+ H ++D+
Sbjct: 814 IKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEH--NLDVI 871
Query: 1072 EAFDELLLL-----KRGGRVIYAG 1090
+ D ++ L K GG ++ G
Sbjct: 872 KNADHIIDLGPEGGKEGGYIVATG 895
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 21/159 (13%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS 952
G L A++G G GK++L+ L +EG + I G A + QND
Sbjct: 31 GALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGSVAYVPQQAWI-----QND--- 80
Query: 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM--ELVELKSLNDSMVGLPGVSGLSTE 1010
++ E++L+ L + R + + +L L S + + +G GV+ LS
Sbjct: 81 ---SLRENILFGCQLE-----EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVN-LSGG 131
Query: 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
Q++R+++A + +N I D+P S +DA + V
Sbjct: 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL---RASGKI-TYCGHELNEFVPQRTCAY 249
+KP + LL GPPG GKT L A+A +G + ASG + Y G + + AY
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESAR--IIREMFAY 269
Query: 250 ISQHD 254
+H+
Sbjct: 270 AKEHE 274
>pdb|2HC5|A Chain A, Solution Nmr Structure Of Protein Yvyc From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr482
Length = 117
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 62 IERL----PTYDRLKKGMLNQVLEDGKVVKHEVDVSNLA--VQDKKRLLESI-----LKI 110
IERL P +DR + NQ D +V H+V +NLA V + +LLE ++
Sbjct: 3 IERLTTLQPVWDRYDTQIHNQKDNDNEVPVHQVSYTNLAEMVGEMNKLLEPSQVHLKFEL 62
Query: 111 VEEDNEKFLKRIRHRTDRVGIEIP 134
++ NE ++K I T+ V EIP
Sbjct: 63 HDKLNEYYVKVIEDSTNEVIREIP 86
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGK 220
PS+ L GPPG GKT L A+A +
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANE 534
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGK 220
PS+ L GPPG GKT L A+A +
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANE 534
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 181 KRSVRI-LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS 228
K+ +R+ L+ +P LL GPPG GKTTL +A +LG +LR +
Sbjct: 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 181 KRSVRI-LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS 228
K+ +R+ L+ +P LL GPPG GKTTL +A +LG +LR +
Sbjct: 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 181 KRSVRI-LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS 228
K+ +R+ L+ +P LL GPPG GKTTL +A +LG +LR +
Sbjct: 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1C17|M Chain M, A1c12 Subcomplex Of F1fo Atp Synthase
Length = 177
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLI-----MMSLGGFVMAKDDIEPF 713
L + + H + LP R+V + +S LG FIL++ M +GGF + ++PF
Sbjct: 31 LLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGFT-KELTLQPF 89
Query: 714 LRWGYYISPMMYGQTSLL 731
W + ++ SLL
Sbjct: 90 NHWAFIPVNLILEGVSLL 107
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 179 SKKRSVRIL-KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL 225
SKK S + KD SG+ R +L GPPG GKTT +A +LG D+
Sbjct: 61 SKKNSFKHAGKDGSGVF---RAAMLYGPPGIGKTTAAHLVAQELGYDI 105
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 981 FVDEVMELVELKSLNDSMVGLPGVSGLSTE----QRKRLTIAVELVANP---SIIFMDEP 1033
F DE L +L + +G + +TE + +R+ +A EL + ++ +DEP
Sbjct: 701 FADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEP 760
Query: 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL-----KRGGRVIY 1088
T+GL + R + VD G TV+ H+ + + A D +L + + GGR++
Sbjct: 761 TTGLHPADVERLQRQLVKLVDAGNTVIAVEHK--MQVVAASDWVLDIGPGAGEDGGRLVA 818
Query: 1089 AG 1090
G
Sbjct: 819 QG 820
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 1007 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
LS + +RL +A +L +N + +DEP++GL ++ + N G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 1065 QPSIDIFEAFDELLLL-----KRGGRVIYAGP 1091
+D+ D L+ + ++GG ++Y+GP
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSGP 469
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 919
L +S + +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 201 LLLGPPGAGKTTLMLALAGKLG 222
LLLGPPGAGK T + LA KLG
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLG 25
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 20/183 (10%)
Query: 869 EMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI 928
E++ VG D+ +L ++ G + G +G GKTTL+ ++ ++G+I
Sbjct: 12 EIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIY 68
Query: 929 SGYPKNQETFARVSG--YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
+G P +V G + +I P E L + ++S K K + + +
Sbjct: 69 NGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKA----VASLYGVKVNKNEIMDAL 119
Query: 987 ELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
E VE+ L + LS +R+ +A L+ N I +D+P +D + V+
Sbjct: 120 ESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Query: 1047 RTV 1049
+++
Sbjct: 174 KSI 176
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 201 LLLGPPGAGKTTLMLALAGKLG 222
LLLGPPGAGK T + LA KLG
Sbjct: 24 LLLGPPGAGKGTQAVKLAEKLG 45
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220
+G+ P+R LL GPPG GKT L A+A +
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL ++
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRK 155
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 186 ILKDVSGIVKPSRMTLLL--GPPGAGKTTLMLALAGKL 221
I+K + VK M LL GPPG GKTT LALA +L
Sbjct: 33 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 978 RKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
R + E+ E L+ +V + GLS Q+ +L +A P +I +DEPT+ L
Sbjct: 873 RPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932
Query: 1038 D 1038
D
Sbjct: 933 D 933
Score = 33.1 bits (74), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
+ D++ S ++GP GAGK+TL+ L G+L L SG++ HE
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL---LPTSGEVYT--HE--------N 735
Query: 247 C--AYISQHDLHHGEMTVRET 265
C AYI QH H E + +T
Sbjct: 736 CRIAYIKQHAFAHIESHLDKT 756
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957
+ G +G GK+TL +A + + G+P +E + Y E DI +
Sbjct: 466 ICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR---TVYVEH-DIDGTHSDT 511
Query: 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTI 1017
S+L S V TK+ D+++E D + P +S LS + +L +
Sbjct: 512 --SVLD---FVFESGVGTKE--AIKDKLIEF----GFTDEXIAXP-ISALSGGWKXKLAL 559
Query: 1018 AVELVANPSIIFMDEPTSGLD 1038
A ++ N I+ +DEPT+ LD
Sbjct: 560 ARAVLRNADILLLDEPTNHLD 580
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 978 RKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
R + E+ E L+ +V + GLS Q+ +L +A P +I +DEPT+ L
Sbjct: 867 RPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 926
Query: 1038 D 1038
D
Sbjct: 927 D 927
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
+ D++ S ++GP GAGK+TL+ L G+L L SG++ HE
Sbjct: 683 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL---LPTSGEVYT--HE--------N 729
Query: 247 C--AYISQHDLHHGEMTVRET 265
C AYI QH H E + +T
Sbjct: 730 CRIAYIKQHAFAHIESHLDKT 750
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957
+ G +G GK+TL +A + + G+P +E + Y E DI +
Sbjct: 460 ICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR---TVYVEH-DIDGTHSDT 505
Query: 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTI 1017
S+L S V TK+ D+++E D + P +S LS + +L +
Sbjct: 506 --SVLD---FVFESGVGTKE--AIKDKLIEF----GFTDEXIAXP-ISALSGGWKXKLAL 553
Query: 1018 AVELVANPSIIFMDEPTSGLD 1038
A ++ N I+ +DEPT+ LD
Sbjct: 554 ARAVLRNADILLLDEPTNHLD 574
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 919
+ L +S + +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 37 EALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAG 219
+ P R LL GPPG GKT L+ A+A
Sbjct: 203 IDPPRGVLLYGPPGTGKTMLVKAVAN 228
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 8/44 (18%)
Query: 884 HSVSGV---FRPGVLTALMGVSGAGKTTLMD-----VLAGRKTG 919
H++ G+ F GVLT++ GVSG+GK+TL++ VLA R G
Sbjct: 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNG 699
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 1007 LSTEQRKRLTIAVELVAN--PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
LS + +R+ +A ++ + + +DEP+ GL R ++ T+ D G T++ H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1065 QPSIDIFEAFDELLLL-----KRGGRVIYAGP 1091
D E D ++ + + GGR++++GP
Sbjct: 582 DE--DTIEHADWIVDIGPGAGEHGGRIVHSGP 611
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 1007 LSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1063
LS + +R+ +A EL + + +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1064 HQPSIDIFEAFDELLLL 1080
H ++D+ + D ++ L
Sbjct: 924 H--NLDVIKTSDWIIDL 938
>pdb|2A45|I Chain I, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|L Chain L, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
Length = 45
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQE 462
Y RDN E G CP G+ADFL +K D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLSTYQTKVDKD 39
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALA 218
+G+ P++ LL GPPG GKT L A+A
Sbjct: 48 TGLRAPAKGLLLFGPPGNGKTLLARAVA 75
>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
Length = 411
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQE 462
Y RDN E G CP G+ADFL +K D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLSTYQTKVDKD 39
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 181 KRSVRILKDVSGIVK-PSRM---TLLLGPPGAGKTTLMLALAGK 220
K V LKD S + +RM LL+GPPG GKT L A+AG+
Sbjct: 29 KEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-GKDLRAS 228
L V ++ +V +LK M L GPPG GKT+ +LAL +L G DL S
Sbjct: 36 LDEVTAQDHAVTVLKKTLKSANLPHM-LFYGPPGTGKTSTILALTKELYGPDLMKS 90
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
+LLG PG GKT+L AGK +DL +L E V +RT
Sbjct: 8 VLLGDPGVGKTSLASLFAGKQERDLH---------EQLGEDVYERT 44
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 198 RMTLLLGPPGAGKTTLMLALAGKLG----KDLRASGK--ITYCGHELNEFVPQRTCAYIS 251
R+T ++GP G+GK+ ++ A+ G K+LRAS K + + G +E +P AY+
Sbjct: 25 RVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAG---SENLPPAGSAYVE 81
Query: 252 QHDLHHG-EMTVRETLDFSG 270
+G E+TV L +G
Sbjct: 82 LVFEENGEEITVARELKRTG 101
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 160 LNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
L+ AL +++ G++ + +++ + +L+ + R L+ G PG GKT + + +A
Sbjct: 33 LDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92
Query: 220 KLGKD 224
LG D
Sbjct: 93 ALGPD 97
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 341 RGISGGQKKRVTT------GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394
RG+SGG++ ++ E+ G + ++DE + LD+ +I LK++ + V
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 395 TMIVALLQPAPETYD 409
+ + + E +D
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 27/118 (22%)
Query: 163 ALNMLESALGLLHLVPSKKRSVR------ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLA 216
A N A + +PSK ++ + K VS + P + L+ GP G+GK+T + A
Sbjct: 85 AFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKRVSDV--PRGLVLVTGPTGSGKSTTLAA 142
Query: 217 LAGKLGKDLRASGKITYCGHELN-----EFVPQRTCAYISQHDLHHGEMTVRETLDFS 269
+ L T H L EFV + ++Q ++H R+TL FS
Sbjct: 143 MLDYLNN--------TKYHHILTIEDPIEFVHESKKCLVNQREVH------RDTLGFS 186
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGK 220
K + LL+GPPG GKT L A+AG+
Sbjct: 42 KIPKGVLLVGPPGTGKTLLAKAVAGE 67
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGK 220
PS+ L GPPG GKT L A+A +
Sbjct: 48 PSKGVLFYGPPGCGKTLLAKAIANE 72
>pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|F Chain F, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|P Chain P, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|S Chain S, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 411
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQE 462
Y RDN E G CP G+ADFL + D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLNNYQTSVDKD 39
>pdb|3P42|A Chain A, Structure Of Gfcc (Ymcb), Protein Encoded By The E. Coli
Group 4 Capsule Operon
pdb|3P42|B Chain B, Structure Of Gfcc (Ymcb), Protein Encoded By The E. Coli
Group 4 Capsule Operon
pdb|3P42|C Chain C, Structure Of Gfcc (Ymcb), Protein Encoded By The E. Coli
Group 4 Capsule Operon
pdb|3P42|D Chain D, Structure Of Gfcc (Ymcb), Protein Encoded By The E. Coli
Group 4 Capsule Operon
Length = 236
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 884 HSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934
+++ V RP +T L VSGAG+ + LAGR Y++ +++G KN
Sbjct: 119 YTLYTVQRPVTITLLGAVSGAGQ---LPWLAGRSVTDYLQDHPRLAGADKN 166
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
G+V P+ + LL GPPG GKT L A+A + G
Sbjct: 40 GLVTPAGV-LLAGPPGCGKTLLAKAVANESG 69
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALA 218
++P + LL GPPG GKT L A+A
Sbjct: 48 IEPPKGILLYGPPGTGKTLLAKAVA 72
>pdb|1JY2|P Chain P, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY2|S Chain S, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY3|P Chain P, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY3|S Chain S, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
Length = 48
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQE 462
Y RDN E G CP G+ADFL + D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLNNYQTSVDKD 39
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 77 LLVGPPGVGKTHLARAVAGE 96
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 53 LLVGPPGVGKTHLARAVAGE 72
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 68 LLVGPPGVGKTHLARAVAGE 87
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGH 236
P + I K V G+ + + LLG G GKT + + ++ K L + T G
Sbjct: 13 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQ 72
Query: 237 ---ELNEFVPQRTCAY-ISQHDLHHGEMTVRET 265
EL EF P Y +S +D + E V +T
Sbjct: 73 LYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQT 105
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGH 236
P + I K V G+ + + LLG G GKT + + ++ K L + T G
Sbjct: 13 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQ 72
Query: 237 ---ELNEFVPQRTCAY-ISQHDLHHGEMTVRET 265
EL EF P Y +S +D + E V +T
Sbjct: 73 LYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQT 105
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGH 236
P + I K V G+ + + LLG G GKT + + ++ K L + T G
Sbjct: 13 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQ 72
Query: 237 ---ELNEFVPQRTCAY-ISQHDLHHGEMTVRET 265
EL EF P Y +S +D + E V +T
Sbjct: 73 LYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQT 105
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGH---ELNEF 241
I K V GI + + LLG G GKT + L ++ K L + T G E EF
Sbjct: 27 IEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF 86
Query: 242 VPQRTCAY-ISQHDLHHGEMTVRETLDF 268
P Y +S +D + E V +T F
Sbjct: 87 FPNNAVEYFVSYYDYYQPEAYVPQTDTF 114
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGH---ELNEF 241
I K V GI + + LLG G GKT + L ++ K L + T G E EF
Sbjct: 21 IEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF 80
Query: 242 VPQRTCAY-ISQHDLHHGEMTVRETLDF 268
P Y +S +D + E V +T F
Sbjct: 81 FPNNAVEYFVSYYDYYQPEAYVPQTDTF 108
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 77 LLVGPPGVGKTHLARAVAGE 96
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGK 220
K + L++GPPG GKT L A+AG+
Sbjct: 43 KIPKGVLMVGPPGTGKTLLAKAIAGE 68
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
+G+ P + LL GPPG GKT + +A + G
Sbjct: 111 TGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142
>pdb|3SBT|B Chain B, Crystal Structure Of A Aar2-prp8 Complex
pdb|3SBS|A Chain A, Crystal Structure Of Aar2 Protein
Length = 363
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 558 TVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNG 591
+ Y T M G S YFG L F+ LN MF G
Sbjct: 202 SYYLNTVMLQGIFKNSSNYFGELQFAFLNAMFFG 235
>pdb|3ZEF|A Chain A, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|D Chain D, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 355
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 558 TVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNG 591
+ Y T M G S YFG L F+ LN MF G
Sbjct: 202 SYYLNTVMLQGIFKNSSNYFGELQFAFLNAMFFG 235
>pdb|4I43|A Chain A, Crystal Structure Of Prp8:aar2 Complex
Length = 384
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 558 TVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNG 591
+ Y T M G S YFG L F+ LN MF G
Sbjct: 202 SYYLNTVMLQGIFKNSSNYFGELQFAFLNAMFFG 235
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+L GPPG GKTTL +A D+ +T E+ E +
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAI 95
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 200 TLLLGPPGAGKTTLMLALAGKL 221
++LGP G+GKTTL+ A++G L
Sbjct: 33 VIILGPNGSGKTTLLRAISGLL 54
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 181 KRSVRILKDVSGIVK-PSRM---TLLLGPPGAGKTTLMLALAGK 220
K V LKD S + +RM LL+GPPG G T L A+AG+
Sbjct: 29 KEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,537,387
Number of Sequences: 62578
Number of extensions: 1308179
Number of successful extensions: 3766
Number of sequences better than 100.0: 169
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3289
Number of HSP's gapped (non-prelim): 449
length of query: 1119
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1010
effective length of database: 8,152,335
effective search space: 8233858350
effective search space used: 8233858350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)