Query 001228
Match_columns 1119
No_of_seqs 720 out of 4772
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 19:17:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 5E-192 1E-196 1738.3 73.9 1009 51-1116 12-1039(1391)
2 PLN03140 ABC transporter G fam 100.0 4E-179 9E-184 1741.5 108.3 1093 5-1117 4-1129(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 2E-137 3E-142 1357.6 100.1 959 112-1117 2-1011(1394)
4 KOG0061 Transporter, ABC super 100.0 1.1E-85 2.5E-90 800.9 58.9 585 133-797 21-608 (613)
5 TIGR00955 3a01204 The Eye Pigm 100.0 3.6E-84 7.9E-89 797.4 60.1 572 181-796 35-612 (617)
6 PLN03211 ABC transporter G-25; 100.0 5.3E-83 1.1E-87 785.7 63.9 610 132-797 34-658 (659)
7 PLN03140 ABC transporter G fam 100.0 2.3E-81 5E-86 821.2 64.8 600 130-798 860-1467(1470)
8 KOG0065 Pleiotropic drug resis 100.0 6E-79 1.3E-83 745.7 35.1 565 182-797 802-1383(1391)
9 TIGR00956 3a01205 Pleiotropic 100.0 2.2E-75 4.7E-80 769.1 62.4 562 183-796 775-1389(1394)
10 KOG0054 Multidrug resistance-a 100.0 2E-75 4.3E-80 734.8 50.5 763 185-1093 535-1358(1381)
11 KOG0055 Multidrug/pheromone ex 100.0 3.1E-74 6.7E-79 706.8 58.1 764 182-1092 364-1208(1228)
12 TIGR01257 rim_protein retinal- 100.0 3E-71 6.5E-76 725.1 73.4 217 854-1093 1937-2155(2272)
13 PLN03130 ABC transporter C fam 100.0 8.8E-69 1.9E-73 713.0 65.7 212 853-1093 1236-1457(1622)
14 PLN03232 ABC transporter C fam 100.0 3.6E-68 7.9E-73 707.8 63.1 212 853-1093 1233-1454(1495)
15 COG1123 ATPase components of v 100.0 9.4E-67 2E-71 603.2 52.1 491 184-1109 22-535 (539)
16 PTZ00265 multidrug resistance 100.0 4.7E-66 1E-70 680.8 56.7 217 853-1092 1164-1447(1466)
17 TIGR00957 MRP_assoc_pro multi 100.0 4.7E-66 1E-70 688.5 55.7 212 853-1093 1283-1504(1522)
18 PRK13549 xylose transporter AT 100.0 8.5E-66 1.8E-70 623.4 49.7 469 184-1103 18-501 (506)
19 PRK09700 D-allose transporter 100.0 1.2E-65 2.6E-70 623.1 47.2 458 184-1092 18-493 (510)
20 PTZ00243 ABC transporter; Prov 100.0 1.7E-64 3.6E-69 671.4 62.2 212 853-1093 1307-1529(1560)
21 PRK10762 D-ribose transporter 100.0 2.3E-65 4.9E-70 619.0 48.9 451 184-1095 17-482 (501)
22 PRK10261 glutathione transport 100.0 7.1E-65 1.5E-69 626.8 52.0 488 184-1093 29-549 (623)
23 TIGR01271 CFTR_protein cystic 100.0 5.8E-64 1.3E-68 666.3 64.0 211 853-1093 1216-1436(1490)
24 PRK15439 autoinducer 2 ABC tra 100.0 7.1E-65 1.5E-69 615.0 49.1 454 184-1094 24-489 (510)
25 PRK15134 microcin C ABC transp 100.0 1.3E-64 2.7E-69 616.5 49.1 463 184-1092 22-510 (529)
26 TIGR03269 met_CoM_red_A2 methy 100.0 1.7E-64 3.7E-69 614.5 49.5 445 184-1092 13-512 (520)
27 TIGR02633 xylG D-xylose ABC tr 100.0 3.3E-64 7.2E-69 609.4 49.0 460 184-1093 14-488 (500)
28 PRK11288 araG L-arabinose tran 100.0 3.1E-64 6.6E-69 609.1 47.9 452 184-1095 17-483 (501)
29 PRK10982 galactose/methyl gala 100.0 3.4E-63 7.3E-68 599.0 47.6 450 184-1093 11-476 (491)
30 PRK10938 putative molybdenum t 100.0 5.7E-62 1.2E-66 588.5 42.1 447 184-1089 16-484 (490)
31 PRK11819 putative ABC transpor 100.0 1.6E-59 3.4E-64 573.7 50.3 202 854-1092 324-528 (556)
32 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.6E-59 3.5E-64 573.6 47.7 202 854-1092 322-526 (552)
33 COG4172 ABC-type uncharacteriz 100.0 5.2E-59 1.1E-63 505.3 43.5 471 182-1093 21-512 (534)
34 PRK15064 ABC transporter ATP-b 100.0 5.3E-59 1.2E-63 567.2 46.9 198 854-1092 319-520 (530)
35 PRK13409 putative ATPase RIL; 100.0 9.1E-58 2E-62 555.6 41.5 200 882-1111 354-557 (590)
36 PRK10636 putative ABC transpor 100.0 6E-56 1.3E-60 547.8 55.1 197 854-1092 312-512 (638)
37 PRK11147 ABC transporter ATPas 100.0 4.5E-56 9.7E-61 550.4 49.2 202 854-1092 319-523 (635)
38 COG1129 MglA ABC-type sugar tr 100.0 9.6E-56 2.1E-60 508.8 44.8 462 182-1102 19-496 (500)
39 PLN03073 ABC transporter F fam 100.0 1.3E-52 2.8E-57 518.8 53.0 199 854-1091 508-708 (718)
40 COG0488 Uup ATPase components 100.0 8.6E-53 1.9E-57 498.3 42.4 222 182-433 14-240 (530)
41 COG3845 ABC-type uncharacteriz 100.0 5.7E-51 1.2E-55 458.3 39.5 463 183-1099 16-495 (501)
42 COG1126 GlnQ ABC-type polar am 100.0 1E-45 2.2E-50 375.3 21.7 211 872-1093 7-221 (240)
43 KOG0927 Predicted transporter 100.0 2.2E-43 4.7E-48 397.4 33.0 205 852-1094 387-593 (614)
44 KOG0061 Transporter, ABC super 100.0 2.9E-44 6.3E-49 438.0 26.2 251 851-1117 22-273 (613)
45 COG1126 GlnQ ABC-type polar am 100.0 6.8E-44 1.5E-48 362.1 19.7 222 182-454 13-238 (240)
46 COG1120 FepC ABC-type cobalami 100.0 2.4E-43 5.2E-48 377.7 20.5 221 875-1104 10-237 (258)
47 COG1127 Ttg2A ABC-type transpo 100.0 8.7E-43 1.9E-47 359.4 20.5 226 874-1111 15-252 (263)
48 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.5E-42 3.3E-47 369.5 22.3 228 854-1104 4-236 (254)
49 COG1135 AbcC ABC-type metal io 100.0 1.3E-42 2.8E-47 370.0 20.2 203 879-1093 18-227 (339)
50 COG1116 TauB ABC-type nitrate/ 100.0 3.1E-42 6.8E-47 361.5 20.3 197 877-1086 13-211 (248)
51 COG1131 CcmA ABC-type multidru 100.0 6.1E-42 1.3E-46 383.5 23.3 212 183-437 17-230 (293)
52 COG1131 CcmA ABC-type multidru 100.0 7.4E-42 1.6E-46 382.8 23.4 207 874-1092 11-221 (293)
53 COG1125 OpuBA ABC-type proline 100.0 5.1E-42 1.1E-46 354.4 19.2 206 876-1093 10-221 (309)
54 COG3638 ABC-type phosphate/pho 100.0 4.7E-42 1E-46 353.1 18.2 218 878-1104 15-245 (258)
55 COG3839 MalK ABC-type sugar tr 100.0 6.1E-42 1.3E-46 380.6 20.2 217 186-453 18-235 (338)
56 PLN03211 ABC transporter G-25; 100.0 5.2E-41 1.1E-45 413.8 30.1 255 852-1115 37-307 (659)
57 COG4555 NatA ABC-type Na+ tran 100.0 4.4E-42 9.5E-47 343.3 15.7 213 881-1105 16-235 (245)
58 COG1135 AbcC ABC-type metal io 100.0 1.9E-41 4.1E-46 361.2 20.4 224 182-456 17-246 (339)
59 COG1136 SalX ABC-type antimicr 100.0 4.6E-41 9.9E-46 353.4 22.2 193 880-1085 18-219 (226)
60 COG3842 PotA ABC-type spermidi 100.0 1.1E-41 2.4E-46 380.5 18.4 223 183-455 17-240 (352)
61 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.2E-40 2.6E-45 354.9 24.2 207 185-433 18-227 (254)
62 COG1120 FepC ABC-type cobalami 100.0 3E-41 6.5E-46 361.6 19.4 211 183-432 14-227 (258)
63 COG1125 OpuBA ABC-type proline 100.0 4.7E-41 1E-45 347.2 19.1 208 183-433 13-225 (309)
64 COG1118 CysA ABC-type sulfate/ 100.0 4.5E-41 9.7E-46 357.1 18.5 207 877-1093 12-223 (345)
65 COG1118 CysA ABC-type sulfate/ 100.0 7.6E-41 1.7E-45 355.4 19.5 224 182-454 13-240 (345)
66 COG2884 FtsE Predicted ATPase 100.0 1.8E-40 4E-45 329.3 20.0 200 880-1092 15-221 (223)
67 COG3839 MalK ABC-type sugar tr 100.0 1.1E-40 2.4E-45 370.6 20.0 208 875-1094 11-220 (338)
68 COG1127 Ttg2A ABC-type transpo 100.0 2E-40 4.4E-45 341.9 20.5 210 182-433 19-235 (263)
69 COG1137 YhbG ABC-type (unclass 100.0 3.3E-41 7.1E-46 336.7 13.3 224 871-1104 8-237 (243)
70 COG1117 PstB ABC-type phosphat 100.0 1.5E-40 3.2E-45 335.7 18.0 218 854-1093 7-233 (253)
71 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-40 2.4E-45 333.3 16.2 212 178-433 9-222 (245)
72 TIGR00955 3a01204 The Eye Pigm 100.0 8.3E-40 1.8E-44 403.7 26.8 230 879-1116 37-268 (617)
73 COG3638 ABC-type phosphate/pho 100.0 2.9E-40 6.2E-45 339.9 18.8 219 180-433 13-237 (258)
74 COG1116 TauB ABC-type nitrate/ 100.0 3.7E-40 8.1E-45 345.9 20.0 192 184-420 16-207 (248)
75 COG1136 SalX ABC-type antimicr 100.0 1.6E-39 3.5E-44 341.7 22.5 195 184-422 18-220 (226)
76 COG3842 PotA ABC-type spermidi 100.0 4E-40 8.8E-45 368.0 18.6 210 874-1094 12-223 (352)
77 PRK13537 nodulation ABC transp 100.0 2E-39 4.4E-44 366.7 24.2 215 854-1093 7-223 (306)
78 COG4152 ABC-type uncharacteriz 100.0 8.7E-40 1.9E-44 335.7 17.1 230 871-1114 6-247 (300)
79 TIGR02314 ABC_MetN D-methionin 100.0 8.9E-39 1.9E-43 364.2 25.5 202 880-1093 18-226 (343)
80 COG3840 ThiQ ABC-type thiamine 100.0 3.6E-39 7.7E-44 317.1 17.9 201 189-432 17-218 (231)
81 PRK11650 ugpC glycerol-3-phosp 100.0 7.7E-39 1.7E-43 367.8 23.5 206 184-432 17-223 (356)
82 cd03261 ABC_Org_Solvent_Resist 100.0 1.5E-38 3.3E-43 347.7 23.6 203 879-1092 12-221 (235)
83 TIGR02314 ABC_MetN D-methionin 100.0 3.2E-38 6.9E-43 359.6 27.0 206 184-432 18-229 (343)
84 TIGR01188 drrA daunorubicin re 100.0 1.8E-38 3.8E-43 359.3 24.0 204 878-1093 4-209 (302)
85 PRK13536 nodulation factor exp 100.0 2.1E-38 4.6E-43 361.9 24.5 215 854-1093 41-257 (340)
86 TIGR03265 PhnT2 putative 2-ami 100.0 2.1E-38 4.4E-43 363.8 24.3 206 184-432 17-223 (353)
87 COG1122 CbiO ABC-type cobalt t 100.0 1.3E-38 2.8E-43 341.9 21.0 214 855-1092 4-223 (235)
88 PRK11650 ugpC glycerol-3-phosp 100.0 1.9E-38 4.2E-43 364.5 23.7 203 879-1093 16-220 (356)
89 PRK11432 fbpC ferric transport 100.0 2.5E-38 5.5E-43 362.4 24.5 206 184-432 19-225 (351)
90 COG1124 DppF ABC-type dipeptid 100.0 9E-39 2E-43 331.8 18.4 200 881-1094 21-228 (252)
91 cd03259 ABC_Carb_Solutes_like 100.0 2.7E-38 5.8E-43 340.5 22.6 200 879-1090 12-213 (213)
92 TIGR03258 PhnT 2-aminoethylpho 100.0 5.8E-38 1.2E-42 360.5 26.6 206 184-432 18-227 (362)
93 TIGR03265 PhnT2 putative 2-ami 100.0 2.7E-38 5.9E-43 362.8 23.9 203 879-1093 16-220 (353)
94 PRK13537 nodulation ABC transp 100.0 6.2E-38 1.3E-42 354.5 26.4 206 184-433 20-227 (306)
95 PRK11432 fbpC ferric transport 100.0 3.1E-38 6.7E-43 361.7 23.8 215 854-1093 6-222 (351)
96 TIGR01186 proV glycine betaine 100.0 4.8E-38 1E-42 360.0 25.2 208 183-433 5-219 (363)
97 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.7E-38 1E-42 340.3 23.8 200 880-1092 17-218 (220)
98 TIGR03258 PhnT 2-aminoethylpho 100.0 4.7E-38 1E-42 361.3 23.8 215 854-1093 5-224 (362)
99 COG1117 PstB ABC-type phosphat 100.0 2E-38 4.3E-43 320.4 18.2 222 183-452 19-248 (253)
100 COG0411 LivG ABC-type branched 100.0 1.8E-38 3.9E-43 330.0 18.3 225 870-1103 7-247 (250)
101 KOG0058 Peptide exporter, ABC 100.0 6.6E-37 1.4E-41 359.0 33.6 224 845-1093 455-687 (716)
102 PRK09452 potA putrescine/sperm 100.0 6.1E-38 1.3E-42 361.5 24.6 218 184-452 27-245 (375)
103 KOG0058 Peptide exporter, ABC 100.0 2.4E-38 5.2E-43 371.1 21.3 211 181-433 478-691 (716)
104 TIGR01288 nodI ATP-binding ABC 100.0 6.6E-38 1.4E-42 354.8 24.1 202 879-1092 16-219 (303)
105 cd03265 ABC_DrrA DrrA is the A 100.0 6E-38 1.3E-42 339.5 22.8 202 879-1092 12-216 (220)
106 TIGR01186 proV glycine betaine 100.0 7.8E-38 1.7E-42 358.2 24.5 204 878-1093 4-215 (363)
107 cd03269 ABC_putative_ATPase Th 100.0 7.5E-38 1.6E-42 336.3 22.8 199 879-1090 12-210 (210)
108 PRK10851 sulfate/thiosulfate t 100.0 6.8E-38 1.5E-42 359.5 23.8 206 879-1093 14-222 (353)
109 TIGR00960 3a0501s02 Type II (G 100.0 5.9E-38 1.3E-42 338.6 21.4 194 880-1085 16-215 (216)
110 PRK09536 btuD corrinoid ABC tr 100.0 6.2E-38 1.3E-42 363.3 23.1 219 877-1104 13-237 (402)
111 cd03218 ABC_YhbG The ABC trans 100.0 1E-37 2.2E-42 340.6 23.1 203 879-1093 12-218 (232)
112 COG0410 LivF ABC-type branched 100.0 4.5E-38 9.7E-43 324.6 18.8 211 871-1094 7-223 (237)
113 TIGR01257 rim_protein retinal- 100.0 1.9E-35 4E-40 389.2 48.1 216 853-1092 927-1144(2272)
114 cd03266 ABC_NatA_sodium_export 100.0 1.1E-37 2.5E-42 336.9 22.5 198 881-1090 19-218 (218)
115 TIGR03522 GldA_ABC_ATP gliding 100.0 1.2E-37 2.7E-42 352.1 23.4 203 878-1093 13-217 (301)
116 cd03261 ABC_Org_Solvent_Resist 100.0 2.4E-37 5.2E-42 338.2 24.9 207 184-432 13-225 (235)
117 cd03226 ABC_cobalt_CbiO_domain 100.0 8.5E-38 1.8E-42 334.5 20.8 192 880-1087 13-205 (205)
118 cd03301 ABC_MalK_N The N-termi 100.0 1.6E-37 3.4E-42 334.6 22.8 199 880-1090 13-213 (213)
119 PRK09452 potA putrescine/sperm 100.0 1.4E-37 3.1E-42 358.4 23.9 215 854-1093 14-230 (375)
120 cd03219 ABC_Mj1267_LivG_branch 100.0 1.9E-37 4.1E-42 339.4 23.6 205 879-1092 12-227 (236)
121 TIGR01188 drrA daunorubicin re 100.0 1.6E-37 3.4E-42 351.6 23.6 206 184-433 6-213 (302)
122 cd03296 ABC_CysA_sulfate_impor 100.0 1.8E-37 3.9E-42 340.0 23.3 205 880-1093 15-222 (239)
123 cd03256 ABC_PhnC_transporter A 100.0 1.4E-37 3E-42 341.6 22.4 205 880-1093 14-230 (241)
124 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.9E-37 4.2E-42 345.2 23.7 210 872-1093 29-246 (269)
125 PRK11153 metN DL-methionine tr 100.0 1.9E-37 4.1E-42 355.9 24.2 218 855-1093 2-226 (343)
126 PRK11000 maltose/maltodextrin 100.0 1.8E-37 3.9E-42 358.8 23.9 203 879-1093 15-219 (369)
127 cd03268 ABC_BcrA_bacitracin_re 100.0 1.6E-37 3.5E-42 333.2 21.6 196 879-1090 12-208 (208)
128 PRK10851 sulfate/thiosulfate t 100.0 2.5E-37 5.5E-42 354.8 24.5 210 184-432 15-225 (353)
129 COG2274 SunT ABC-type bacterio 100.0 1.4E-37 3E-42 380.2 23.7 207 185-433 487-696 (709)
130 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.5E-37 3.3E-42 335.9 21.3 193 880-1085 17-217 (218)
131 cd03258 ABC_MetN_methionine_tr 100.0 2.6E-37 5.7E-42 337.5 23.3 200 881-1092 19-225 (233)
132 PRK11607 potG putrescine trans 100.0 2.7E-37 5.9E-42 356.8 24.6 206 184-432 32-238 (377)
133 cd03260 ABC_PstB_phosphate_tra 100.0 2.5E-37 5.5E-42 336.3 22.6 203 879-1092 12-224 (227)
134 COG3840 ThiQ ABC-type thiamine 100.0 6.7E-38 1.5E-42 308.1 16.1 197 885-1093 17-215 (231)
135 PRK11607 potG putrescine trans 100.0 3E-37 6.4E-42 356.5 24.1 215 854-1093 19-235 (377)
136 PRK11153 metN DL-methionine tr 100.0 7.8E-37 1.7E-41 350.8 27.1 206 184-432 18-229 (343)
137 PRK11629 lolD lipoprotein tran 100.0 5.6E-37 1.2E-41 334.8 24.6 216 855-1092 6-229 (233)
138 PRK11000 maltose/maltodextrin 100.0 4.3E-37 9.3E-42 355.7 24.8 206 184-432 16-222 (369)
139 TIGR02315 ABC_phnC phosphonate 100.0 2.4E-37 5.3E-42 340.0 21.7 205 880-1093 15-231 (243)
140 COG1124 DppF ABC-type dipeptid 100.0 4E-37 8.8E-42 319.5 21.7 204 185-433 21-231 (252)
141 COG0410 LivF ABC-type branched 100.0 4.7E-37 1E-41 317.1 21.9 207 183-433 15-226 (237)
142 KOG0062 ATPase component of AB 100.0 4.7E-37 1E-41 344.6 23.5 206 849-1091 357-563 (582)
143 PRK09493 glnQ glutamine ABC tr 100.0 5.2E-37 1.1E-41 336.6 23.5 203 880-1093 14-221 (240)
144 COG1137 YhbG ABC-type (unclass 100.0 3.9E-38 8.4E-43 314.7 13.1 210 182-433 15-228 (243)
145 COG2274 SunT ABC-type bacterio 100.0 3.6E-36 7.9E-41 367.8 33.3 218 848-1093 465-692 (709)
146 TIGR02673 FtsE cell division A 100.0 3.7E-37 8E-42 331.9 21.8 193 880-1083 15-213 (214)
147 PRK13536 nodulation factor exp 100.0 5.8E-37 1.3E-41 350.1 24.7 206 184-433 54-261 (340)
148 PRK13637 cbiO cobalt transport 100.0 5.1E-37 1.1E-41 344.6 23.8 219 855-1093 3-230 (287)
149 cd03263 ABC_subfamily_A The AB 100.0 4.6E-37 1E-41 332.6 22.6 200 880-1092 15-216 (220)
150 cd03234 ABCG_White The White s 100.0 1.1E-36 2.4E-41 330.8 25.6 205 880-1090 20-226 (226)
151 PRK11264 putative amino-acid A 100.0 6.7E-37 1.5E-41 337.9 24.0 202 880-1092 16-228 (250)
152 PRK13651 cobalt transporter AT 100.0 7.5E-37 1.6E-41 345.0 24.5 219 855-1093 3-250 (305)
153 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.5E-37 1.4E-41 336.2 23.2 202 880-1093 14-221 (242)
154 PRK11248 tauB taurine transpor 100.0 7.8E-37 1.7E-41 337.5 23.8 200 880-1092 14-215 (255)
155 cd03296 ABC_CysA_sulfate_impor 100.0 1.7E-36 3.7E-41 332.3 26.2 210 184-432 15-225 (239)
156 PRK13647 cbiO cobalt transport 100.0 8.9E-37 1.9E-41 340.6 24.4 214 855-1092 5-222 (274)
157 cd03235 ABC_Metallic_Cations A 100.0 4E-37 8.6E-42 331.4 20.8 200 879-1090 11-213 (213)
158 PRK10895 lipopolysaccharide AB 100.0 5.8E-37 1.2E-41 336.5 22.4 203 880-1093 16-222 (241)
159 cd03225 ABC_cobalt_CbiO_domain 100.0 5.6E-37 1.2E-41 329.8 21.6 193 880-1083 14-210 (211)
160 COG1122 CbiO ABC-type cobalt t 100.0 3.1E-37 6.8E-42 331.2 19.5 207 184-433 17-228 (235)
161 PRK11831 putative ABC transpor 100.0 1E-36 2.3E-41 339.5 24.0 227 854-1104 7-244 (269)
162 cd03259 ABC_Carb_Solutes_like 100.0 8.2E-37 1.8E-41 329.0 22.4 200 184-426 13-213 (213)
163 cd03224 ABC_TM1139_LivF_branch 100.0 6.1E-37 1.3E-41 332.2 21.5 200 879-1092 12-216 (222)
164 cd03264 ABC_drug_resistance_li 100.0 7.8E-37 1.7E-41 328.6 21.9 197 880-1090 13-211 (211)
165 cd03292 ABC_FtsE_transporter F 100.0 7.9E-37 1.7E-41 329.4 22.0 194 880-1085 14-213 (214)
166 COG2884 FtsE Predicted ATPase 100.0 4.5E-37 9.8E-42 305.2 18.3 205 178-426 9-219 (223)
167 COG4988 CydD ABC-type transpor 100.0 1.1E-36 2.3E-41 351.5 24.2 206 185-433 335-543 (559)
168 cd03265 ABC_DrrA DrrA is the A 100.0 1.1E-36 2.4E-41 329.5 23.1 205 184-431 13-219 (220)
169 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.2E-36 2.6E-41 332.9 23.5 201 880-1093 14-217 (236)
170 COG0411 LivG ABC-type branched 100.0 3.2E-37 6.9E-42 320.7 17.8 221 182-433 15-239 (250)
171 PRK13631 cbiO cobalt transport 100.0 1.3E-36 2.8E-41 345.1 24.5 219 854-1093 21-261 (320)
172 cd03262 ABC_HisP_GlnQ_permease 100.0 7.9E-37 1.7E-41 329.1 21.5 195 880-1085 13-212 (213)
173 PRK13643 cbiO cobalt transport 100.0 1.7E-36 3.6E-41 340.7 24.9 219 855-1093 2-229 (288)
174 KOG0057 Mitochondrial Fe/S clu 100.0 9.4E-37 2E-41 345.7 22.8 227 129-433 343-574 (591)
175 COG4559 ABC-type hemin transpo 100.0 8E-37 1.7E-41 308.0 19.8 227 855-1104 2-239 (259)
176 PRK10908 cell division protein 100.0 1.2E-36 2.6E-41 329.8 22.8 196 880-1087 15-216 (222)
177 cd03257 ABC_NikE_OppD_transpor 100.0 1.4E-36 3E-41 330.8 23.0 200 881-1090 19-228 (228)
178 PRK13636 cbiO cobalt transport 100.0 2E-36 4.3E-41 339.4 24.9 216 854-1093 5-227 (283)
179 PRK13634 cbiO cobalt transport 100.0 1.2E-36 2.5E-41 342.3 22.7 219 855-1093 3-231 (290)
180 cd03258 ABC_MetN_methionine_tr 100.0 1.4E-36 3.1E-41 331.7 22.7 205 185-432 19-229 (233)
181 COG1245 Predicted ATPase, RNas 100.0 5.7E-36 1.2E-40 330.3 27.4 173 883-1081 357-530 (591)
182 cd03293 ABC_NrtD_SsuB_transpor 100.0 2E-36 4.4E-41 327.5 23.6 201 184-429 17-219 (220)
183 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.5E-36 5.3E-41 336.3 24.9 208 182-432 35-249 (269)
184 TIGR01288 nodI ATP-binding ABC 100.0 2E-36 4.4E-41 342.7 24.4 206 184-433 17-224 (303)
185 TIGR03740 galliderm_ABC gallid 100.0 1.9E-36 4E-41 328.5 23.1 208 879-1104 12-219 (223)
186 PRK13637 cbiO cobalt transport 100.0 2.5E-36 5.3E-41 339.1 24.8 218 184-444 20-248 (287)
187 PRK10619 histidine/lysine/argi 100.0 2.6E-36 5.7E-41 334.4 24.5 214 855-1092 6-236 (257)
188 TIGR02211 LolD_lipo_ex lipopro 100.0 1.9E-36 4E-41 328.1 22.8 195 880-1087 18-220 (221)
189 cd03219 ABC_Mj1267_LivG_branch 100.0 2.8E-36 6E-41 330.2 24.3 215 184-432 13-231 (236)
190 PRK13650 cbiO cobalt transport 100.0 2.4E-36 5.3E-41 338.0 24.1 216 855-1093 5-225 (279)
191 PRK11300 livG leucine/isoleuci 100.0 1.8E-36 3.8E-41 335.6 22.6 217 855-1093 6-239 (255)
192 PRK13650 cbiO cobalt transport 100.0 5.8E-36 1.3E-40 335.0 26.9 216 184-443 20-242 (279)
193 PRK13643 cbiO cobalt transport 100.0 5.4E-36 1.2E-40 336.5 26.7 223 185-452 20-255 (288)
194 TIGR00972 3a0107s01c2 phosphat 100.0 2.8E-36 6E-41 332.3 23.9 202 880-1092 14-227 (247)
195 PRK13641 cbiO cobalt transport 100.0 2.3E-36 4.9E-41 339.6 23.4 202 880-1093 20-230 (287)
196 cd03256 ABC_PhnC_transporter A 100.0 2.5E-36 5.5E-41 331.6 23.2 214 184-432 14-233 (241)
197 PRK15079 oligopeptide ABC tran 100.0 5.1E-36 1.1E-40 341.5 26.4 230 854-1093 8-247 (331)
198 PRK11247 ssuB aliphatic sulfon 100.0 1.8E-36 4E-41 334.1 21.9 207 854-1093 12-219 (257)
199 cd03301 ABC_MalK_N The N-termi 100.0 3.1E-36 6.8E-41 324.5 23.2 200 184-426 13-213 (213)
200 PRK11231 fecE iron-dicitrate t 100.0 2.2E-36 4.7E-41 334.6 22.6 217 879-1104 14-236 (255)
201 TIGR03411 urea_trans_UrtD urea 100.0 3E-36 6.4E-41 331.2 23.4 214 880-1103 15-239 (242)
202 PRK11614 livF leucine/isoleuci 100.0 1.6E-36 3.4E-41 332.2 21.2 212 855-1093 6-222 (237)
203 PRK13646 cbiO cobalt transport 100.0 2E-36 4.4E-41 339.9 22.5 218 855-1093 3-231 (286)
204 PRK11124 artP arginine transpo 100.0 3E-36 6.6E-41 331.0 23.3 202 880-1093 15-226 (242)
205 TIGR03522 GldA_ABC_ATP gliding 100.0 3.1E-36 6.8E-41 340.6 24.0 205 184-433 15-221 (301)
206 TIGR00960 3a0501s02 Type II (G 100.0 1.3E-36 2.9E-41 328.1 19.7 195 184-422 16-216 (216)
207 cd03218 ABC_YhbG The ABC trans 100.0 3.9E-36 8.5E-41 328.1 23.6 205 184-432 13-221 (232)
208 PRK14268 phosphate ABC transpo 100.0 4.5E-36 9.8E-41 332.6 24.2 215 854-1093 12-238 (258)
209 TIGR03005 ectoine_ehuA ectoine 100.0 4E-36 8.6E-41 332.1 23.6 203 880-1093 13-232 (252)
210 cd03263 ABC_subfamily_A The AB 100.0 2.5E-36 5.4E-41 326.9 21.5 203 184-431 15-219 (220)
211 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4E-36 8.8E-41 330.0 23.4 206 184-432 14-224 (242)
212 PRK00635 excinuclease ABC subu 100.0 1.8E-34 3.9E-39 374.2 42.5 135 951-1093 759-902 (1809)
213 PRK13634 cbiO cobalt transport 100.0 4E-36 8.7E-41 337.9 23.6 218 184-444 20-249 (290)
214 PRK10070 glycine betaine trans 100.0 3.9E-36 8.4E-41 348.1 24.1 204 878-1093 39-250 (400)
215 PRK10070 glycine betaine trans 100.0 5.1E-36 1.1E-40 347.1 24.9 207 183-432 40-253 (400)
216 PRK13652 cbiO cobalt transport 100.0 6.4E-36 1.4E-40 334.5 24.8 201 881-1093 18-223 (277)
217 PRK14267 phosphate ABC transpo 100.0 5.4E-36 1.2E-40 331.3 23.8 217 855-1093 5-233 (253)
218 PRK13548 hmuV hemin importer A 100.0 4.2E-36 9.2E-41 332.5 22.9 203 879-1093 14-226 (258)
219 PRK11831 putative ABC transpor 100.0 1.4E-35 2.9E-40 330.6 27.1 207 184-432 20-232 (269)
220 PRK14247 phosphate ABC transpo 100.0 6.2E-36 1.3E-40 330.2 24.1 205 880-1093 16-230 (250)
221 TIGR02315 ABC_phnC phosphonate 100.0 2.9E-36 6.4E-41 331.5 21.5 213 184-431 15-233 (243)
222 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.5E-36 5.3E-41 326.5 20.5 195 184-422 17-218 (218)
223 TIGR03410 urea_trans_UrtE urea 100.0 3.5E-36 7.7E-41 328.0 21.9 210 879-1103 12-228 (230)
224 cd03224 ABC_TM1139_LivF_branch 100.0 5.4E-36 1.2E-40 324.8 23.0 203 184-432 13-220 (222)
225 TIGR01978 sufC FeS assembly AT 100.0 6.5E-36 1.4E-40 328.7 23.8 208 879-1092 12-229 (243)
226 PRK13647 cbiO cobalt transport 100.0 6E-36 1.3E-40 333.9 23.6 204 184-431 18-225 (274)
227 PRK13644 cbiO cobalt transport 100.0 5.1E-36 1.1E-40 334.5 23.0 201 880-1093 15-220 (274)
228 cd03266 ABC_NatA_sodium_export 100.0 7.6E-36 1.6E-40 322.7 23.6 198 185-426 19-218 (218)
229 PRK10575 iron-hydroxamate tran 100.0 4.3E-36 9.4E-41 333.9 22.3 229 854-1104 11-246 (265)
230 cd03269 ABC_putative_ATPase Th 100.0 4.5E-36 9.8E-41 322.4 21.6 198 184-426 13-210 (210)
231 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.1E-36 8.9E-41 323.0 21.3 194 885-1090 16-211 (211)
232 PRK00349 uvrA excinuclease ABC 100.0 1.8E-34 3.9E-39 361.6 39.4 124 954-1093 791-923 (943)
233 TIGR03415 ABC_choXWV_ATP choli 100.0 6.7E-36 1.4E-40 343.7 24.3 205 877-1093 34-250 (382)
234 PRK13638 cbiO cobalt transport 100.0 5.5E-36 1.2E-40 334.2 22.9 201 880-1092 14-220 (271)
235 PRK11174 cysteine/glutathione 100.0 6.7E-36 1.4E-40 369.8 26.0 207 184-433 363-572 (588)
236 COG4604 CeuD ABC-type enteroch 100.0 4E-37 8.7E-42 306.3 11.9 225 871-1105 5-235 (252)
237 PRK10253 iron-enterobactin tra 100.0 4.8E-36 1E-40 333.6 22.0 229 854-1104 7-242 (265)
238 PRK09984 phosphonate/organopho 100.0 6.6E-36 1.4E-40 332.2 22.9 219 879-1104 16-250 (262)
239 cd03268 ABC_BcrA_bacitracin_re 100.0 6.4E-36 1.4E-40 320.8 22.0 195 184-426 13-208 (208)
240 TIGR03415 ABC_choXWV_ATP choli 100.0 9.8E-36 2.1E-40 342.3 24.9 208 182-432 35-253 (382)
241 KOG0066 eIF2-interacting prote 100.0 2E-35 4.4E-40 321.7 25.9 213 851-1103 583-797 (807)
242 cd03226 ABC_cobalt_CbiO_domain 100.0 4.3E-36 9.4E-41 321.3 20.5 192 184-423 13-205 (205)
243 cd03234 ABCG_White The White s 100.0 8.5E-36 1.8E-40 324.0 23.1 204 183-426 19-226 (226)
244 PRK10584 putative ABC transpor 100.0 1E-35 2.3E-40 323.8 23.8 213 854-1088 6-226 (228)
245 TIGR03608 L_ocin_972_ABC putat 100.0 6.7E-36 1.4E-40 320.2 21.9 191 878-1080 9-206 (206)
246 cd03260 ABC_PstB_phosphate_tra 100.0 6.7E-36 1.5E-40 325.1 22.0 204 184-430 13-226 (227)
247 PRK13649 cbiO cobalt transport 100.0 8.7E-36 1.9E-40 334.3 23.6 200 881-1093 21-230 (280)
248 PRK14241 phosphate transporter 100.0 1.1E-35 2.4E-40 329.6 24.1 217 855-1093 5-238 (258)
249 PRK11629 lolD lipoprotein tran 100.0 1.3E-35 2.8E-40 324.1 24.1 201 184-428 22-229 (233)
250 PRK13635 cbiO cobalt transport 100.0 7.4E-36 1.6E-40 333.9 22.7 215 855-1093 6-225 (279)
251 PRK14273 phosphate ABC transpo 100.0 9.9E-36 2.1E-40 329.3 23.4 216 854-1093 7-234 (254)
252 PRK13646 cbiO cobalt transport 100.0 1.5E-35 3.2E-40 332.8 25.1 205 184-432 20-234 (286)
253 PRK13639 cbiO cobalt transport 100.0 1.4E-35 3E-40 331.3 24.7 202 880-1093 15-222 (275)
254 COG4988 CydD ABC-type transpor 100.0 3.4E-36 7.4E-41 347.3 20.0 216 851-1094 317-540 (559)
255 TIGR03873 F420-0_ABC_ATP propo 100.0 8.2E-36 1.8E-40 330.2 22.2 206 879-1093 13-222 (256)
256 cd03267 ABC_NatA_like Similar 100.0 1.5E-35 3.3E-40 323.9 23.8 202 877-1090 31-236 (236)
257 PRK14242 phosphate transporter 100.0 2.4E-35 5.2E-40 326.1 25.6 217 852-1092 4-232 (253)
258 PRK10744 pstB phosphate transp 100.0 1.9E-35 4.2E-40 327.9 25.0 220 850-1093 9-240 (260)
259 TIGR01184 ntrCD nitrate transp 100.0 9.6E-36 2.1E-40 324.1 22.0 198 883-1092 1-199 (230)
260 PRK09536 btuD corrinoid ABC tr 100.0 1.2E-35 2.7E-40 344.1 24.1 209 184-432 16-227 (402)
261 PRK13547 hmuV hemin importer A 100.0 9.5E-36 2.1E-40 331.1 22.3 219 879-1104 13-253 (272)
262 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.8E-34 3.9E-39 362.7 36.7 210 853-1093 450-669 (686)
263 TIGR01277 thiQ thiamine ABC tr 100.0 1.6E-35 3.5E-40 318.8 23.0 198 882-1091 13-212 (213)
264 PRK13651 cobalt transporter AT 100.0 2.4E-35 5.3E-40 332.7 25.5 205 184-432 20-253 (305)
265 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.5E-35 5.5E-40 322.4 24.8 206 184-433 14-221 (236)
266 cd03233 ABC_PDR_domain1 The pl 100.0 2.5E-35 5.5E-40 314.2 24.1 182 183-426 19-202 (202)
267 PRK14269 phosphate ABC transpo 100.0 1.6E-35 3.4E-40 326.0 23.2 204 880-1093 15-226 (246)
268 cd03297 ABC_ModC_molybdenum_tr 100.0 1.5E-35 3.3E-40 319.3 22.6 198 876-1090 9-214 (214)
269 PRK09493 glnQ glutamine ABC tr 100.0 1.7E-35 3.7E-40 324.7 23.3 205 184-432 14-224 (240)
270 PRK15079 oligopeptide ABC tran 100.0 2.3E-35 5.1E-40 336.0 25.3 209 183-432 33-250 (331)
271 cd03300 ABC_PotA_N PotA is an 100.0 1.9E-35 4.2E-40 322.4 23.5 201 880-1092 13-215 (232)
272 cd03267 ABC_NatA_like Similar 100.0 2.6E-35 5.6E-40 322.1 24.5 202 182-426 32-236 (236)
273 TIGR02769 nickel_nikE nickel i 100.0 1.7E-35 3.8E-40 329.1 23.5 203 880-1093 24-236 (265)
274 COG4559 ABC-type hemin transpo 100.0 1.2E-35 2.6E-40 299.4 19.8 208 184-433 14-230 (259)
275 PRK14245 phosphate ABC transpo 100.0 2.4E-35 5.2E-40 325.5 24.0 203 880-1093 16-230 (250)
276 COG4525 TauB ABC-type taurine 100.0 9.5E-36 2.1E-40 295.7 18.5 200 881-1093 19-220 (259)
277 PRK13648 cbiO cobalt transport 100.0 2.7E-35 5.9E-40 328.3 24.5 216 854-1093 7-227 (269)
278 PRK14256 phosphate ABC transpo 100.0 3.2E-35 6.9E-40 324.9 24.7 217 854-1093 4-232 (252)
279 cd03292 ABC_FtsE_transporter F 100.0 1.1E-35 2.5E-40 320.3 20.6 195 184-422 14-214 (214)
280 PRK11308 dppF dipeptide transp 100.0 2.2E-35 4.8E-40 335.9 24.0 226 854-1093 5-240 (327)
281 PRK13549 xylose transporter AT 100.0 1.3E-35 2.9E-40 359.8 23.6 220 855-1094 6-229 (506)
282 PRK13636 cbiO cobalt transport 100.0 1.7E-35 3.6E-40 332.0 22.5 207 184-433 19-231 (283)
283 PRK11264 putative amino-acid A 100.0 2.7E-35 5.9E-40 325.1 23.9 206 184-432 16-232 (250)
284 PRK11022 dppD dipeptide transp 100.0 2.8E-35 6.1E-40 335.3 24.6 221 855-1093 4-239 (326)
285 cd03233 ABC_PDR_domain1 The pl 100.0 3.1E-35 6.7E-40 313.5 23.4 196 854-1090 3-202 (202)
286 cd03257 ABC_NikE_OppD_transpor 100.0 2.3E-35 5E-40 321.2 22.9 201 185-426 19-228 (228)
287 PRK13631 cbiO cobalt transport 100.0 2.6E-35 5.7E-40 334.3 24.1 216 184-444 39-279 (320)
288 TIGR02142 modC_ABC molybdenum 100.0 1.9E-35 4.2E-40 341.0 23.4 194 885-1092 15-216 (354)
289 TIGR00968 3a0106s01 sulfate AB 100.0 2.4E-35 5.3E-40 322.6 22.9 202 880-1093 13-216 (237)
290 PRK10771 thiQ thiamine transpo 100.0 1.5E-35 3.2E-40 323.4 21.1 208 885-1104 17-228 (232)
291 PRK13635 cbiO cobalt transport 100.0 3.1E-35 6.6E-40 328.9 24.1 216 184-443 20-242 (279)
292 TIGR02673 FtsE cell division A 100.0 1.3E-35 2.9E-40 319.8 20.5 194 184-421 15-214 (214)
293 PRK13645 cbiO cobalt transport 100.0 1.9E-35 4.2E-40 332.8 22.4 219 854-1092 6-235 (289)
294 COG4181 Predicted ABC-type tra 100.0 1.6E-35 3.4E-40 288.3 18.5 200 876-1088 19-226 (228)
295 PRK14250 phosphate ABC transpo 100.0 1.7E-35 3.8E-40 324.5 21.3 209 855-1093 4-217 (241)
296 PRK09473 oppD oligopeptide tra 100.0 4.8E-35 1E-39 333.7 25.7 225 854-1093 12-247 (330)
297 PRK13632 cbiO cobalt transport 100.0 2.2E-35 4.8E-40 329.2 22.4 216 854-1093 7-227 (271)
298 PRK11144 modC molybdate transp 100.0 2.3E-35 4.9E-40 339.9 23.2 195 189-432 16-217 (352)
299 PRK13633 cobalt transporter AT 100.0 2.2E-35 4.7E-40 330.7 22.4 219 855-1093 5-229 (280)
300 cd03232 ABC_PDR_domain2 The pl 100.0 2.4E-35 5.1E-40 312.0 21.4 190 854-1090 3-192 (192)
301 PRK14235 phosphate transporter 100.0 3.6E-35 7.8E-40 326.8 24.0 216 854-1092 19-246 (267)
302 PRK13652 cbiO cobalt transport 100.0 4.7E-35 1E-39 327.5 24.8 205 185-432 18-226 (277)
303 PRK15112 antimicrobial peptide 100.0 2.2E-35 4.9E-40 328.4 22.2 224 855-1093 5-235 (267)
304 PRK10895 lipopolysaccharide AB 100.0 3E-35 6.6E-40 322.9 22.8 206 184-432 16-225 (241)
305 TIGR03410 urea_trans_UrtE urea 100.0 3E-35 6.5E-40 320.6 22.6 202 184-431 13-219 (230)
306 PRK13632 cbiO cobalt transport 100.0 7E-35 1.5E-39 325.2 26.0 205 184-432 22-230 (271)
307 PRK11247 ssuB aliphatic sulfon 100.0 3E-35 6.6E-40 324.4 22.7 194 185-429 26-219 (257)
308 cd03299 ABC_ModC_like Archeal 100.0 3.9E-35 8.5E-40 320.5 23.2 200 882-1093 14-215 (235)
309 PRK09473 oppD oligopeptide tra 100.0 1.2E-34 2.6E-39 330.4 28.1 214 184-433 29-251 (330)
310 PRK11144 modC molybdate transp 100.0 2.5E-35 5.5E-40 339.5 22.8 191 885-1093 16-214 (352)
311 TIGR02770 nickel_nikD nickel i 100.0 3.6E-35 7.7E-40 319.9 22.7 201 882-1092 1-210 (230)
312 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6.2E-34 1.3E-38 359.4 37.5 210 853-1092 476-695 (710)
313 cd03264 ABC_drug_resistance_li 100.0 2.5E-35 5.4E-40 316.9 21.2 197 184-426 13-211 (211)
314 COG4175 ProV ABC-type proline/ 100.0 8.4E-36 1.8E-40 316.7 16.9 202 881-1094 42-251 (386)
315 PRK15093 antimicrobial peptide 100.0 6.6E-35 1.4E-39 333.4 25.6 222 855-1092 4-243 (330)
316 PRK14237 phosphate transporter 100.0 9.2E-35 2E-39 323.5 26.1 223 851-1093 17-247 (267)
317 PRK11022 dppD dipeptide transp 100.0 1.1E-34 2.3E-39 330.6 27.1 211 184-433 20-243 (326)
318 PRK13642 cbiO cobalt transport 100.0 5.6E-35 1.2E-39 326.8 24.3 217 854-1093 4-225 (277)
319 PRK11248 tauB taurine transpor 100.0 5.4E-35 1.2E-39 322.8 23.9 201 184-429 14-216 (255)
320 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5.1E-35 1.1E-39 317.0 23.2 199 871-1090 26-224 (224)
321 COG4618 ArpD ABC-type protease 100.0 2.7E-35 5.8E-40 330.5 21.5 237 126-435 323-562 (580)
322 TIGR02211 LolD_lipo_ex lipopro 100.0 4.2E-35 9.1E-40 317.5 22.5 196 184-423 18-220 (221)
323 PRK13644 cbiO cobalt transport 100.0 3.1E-35 6.6E-40 328.3 22.0 204 184-432 15-223 (274)
324 PRK14259 phosphate ABC transpo 100.0 3.8E-35 8.2E-40 326.8 22.6 216 853-1093 12-249 (269)
325 TIGR01193 bacteriocin_ABC ABC- 100.0 1.1E-33 2.5E-38 356.6 39.0 211 853-1092 472-692 (708)
326 PRK14244 phosphate ABC transpo 100.0 4.8E-35 1E-39 323.2 23.3 203 880-1092 18-232 (251)
327 PRK13640 cbiO cobalt transport 100.0 3.7E-35 8E-40 329.0 22.6 218 854-1093 5-228 (282)
328 KOG0057 Mitochondrial Fe/S clu 100.0 7.2E-36 1.6E-40 338.5 16.9 212 851-1092 348-569 (591)
329 PRK14250 phosphate ABC transpo 100.0 9.9E-35 2.2E-39 318.6 25.3 201 184-432 16-220 (241)
330 PRK10908 cell division protein 100.0 3.5E-35 7.6E-40 318.3 21.2 196 184-423 15-216 (222)
331 PRK11614 livF leucine/isoleuci 100.0 4.5E-35 9.7E-40 320.7 22.3 203 184-432 18-225 (237)
332 TIGR02142 modC_ABC molybdenum 100.0 5.6E-35 1.2E-39 337.1 24.2 199 189-432 15-220 (354)
333 PRK11124 artP arginine transpo 100.0 6.4E-35 1.4E-39 320.5 23.5 204 184-431 15-228 (242)
334 COG4175 ProV ABC-type proline/ 100.0 1.4E-35 3.1E-40 315.0 17.5 221 184-455 41-268 (386)
335 TIGR02769 nickel_nikE nickel i 100.0 6.4E-35 1.4E-39 324.6 23.6 208 183-432 23-239 (265)
336 PRK14273 phosphate ABC transpo 100.0 1.5E-34 3.3E-39 319.9 26.5 206 185-432 21-237 (254)
337 TIGR01184 ntrCD nitrate transp 100.0 5.2E-35 1.1E-39 318.3 22.4 202 187-431 1-202 (230)
338 PRK14257 phosphate ABC transpo 100.0 9.5E-35 2.1E-39 330.7 25.4 222 854-1093 80-309 (329)
339 TIGR02770 nickel_nikD nickel i 100.0 6.2E-35 1.3E-39 318.0 22.9 204 186-432 1-214 (230)
340 TIGR03005 ectoine_ehuA ectoine 100.0 8.9E-35 1.9E-39 321.3 24.4 206 184-432 13-235 (252)
341 TIGR00972 3a0107s01c2 phosphat 100.0 9.1E-35 2E-39 320.3 24.4 206 185-432 15-231 (247)
342 PRK13548 hmuV hemin importer A 100.0 8E-35 1.7E-39 322.3 24.0 206 184-432 15-229 (258)
343 PRK14270 phosphate ABC transpo 100.0 7.5E-35 1.6E-39 321.7 23.7 203 880-1093 17-231 (251)
344 PRK13633 cobalt transporter AT 100.0 4.4E-35 9.5E-40 328.2 22.1 206 184-433 23-233 (280)
345 PRK14240 phosphate transporter 100.0 8.1E-35 1.8E-39 321.3 23.9 214 855-1092 4-229 (250)
346 TIGR03740 galliderm_ABC gallid 100.0 8.5E-35 1.8E-39 315.5 23.5 198 184-430 13-210 (223)
347 PRK14274 phosphate ABC transpo 100.0 7.2E-35 1.6E-39 323.3 23.5 216 854-1093 12-239 (259)
348 PRK10762 D-ribose transporter 100.0 4E-35 8.7E-40 355.2 23.2 227 855-1103 5-237 (501)
349 TIGR00630 uvra excinuclease AB 100.0 2E-33 4.4E-38 351.6 39.1 123 954-1092 789-920 (924)
350 TIGR03411 urea_trans_UrtD urea 100.0 8.3E-35 1.8E-39 319.7 23.5 211 184-431 15-229 (242)
351 PRK13648 cbiO cobalt transport 100.0 1.1E-34 2.3E-39 323.5 24.7 215 185-443 23-244 (269)
352 PRK10418 nikD nickel transport 100.0 1.3E-34 2.8E-39 320.2 25.1 215 853-1093 3-226 (254)
353 PRK13641 cbiO cobalt transport 100.0 6.1E-35 1.3E-39 328.0 22.8 205 184-432 20-233 (287)
354 PRK13639 cbiO cobalt transport 100.0 9.8E-35 2.1E-39 324.6 24.3 205 184-432 15-225 (275)
355 KOG0055 Multidrug/pheromone ex 100.0 2.7E-35 5.9E-40 363.7 21.6 213 179-433 998-1213(1228)
356 PRK13640 cbiO cobalt transport 100.0 2.1E-34 4.6E-39 322.8 27.0 209 184-433 20-232 (282)
357 PRK11300 livG leucine/isoleuci 100.0 8.7E-35 1.9E-39 322.1 23.6 221 184-432 18-242 (255)
358 PRK14239 phosphate transporter 100.0 8.6E-35 1.9E-39 321.6 23.4 216 854-1093 5-232 (252)
359 PRK15056 manganese/iron transp 100.0 9.8E-35 2.1E-39 324.2 23.8 229 854-1104 6-239 (272)
360 TIGR02982 heterocyst_DevA ABC 100.0 8.4E-35 1.8E-39 314.8 22.6 195 880-1086 18-219 (220)
361 PRK11308 dppF dipeptide transp 100.0 1.5E-34 3.2E-39 329.2 25.6 208 184-433 28-244 (327)
362 PRK14260 phosphate ABC transpo 100.0 9.5E-35 2E-39 322.2 23.3 217 854-1093 7-239 (259)
363 PRK11701 phnK phosphonate C-P 100.0 9.8E-35 2.1E-39 322.0 23.4 215 855-1093 7-237 (258)
364 cd03300 ABC_PotA_N PotA is an 100.0 1.6E-34 3.4E-39 315.2 24.6 206 184-432 13-219 (232)
365 PRK10619 histidine/lysine/argi 100.0 9.3E-35 2E-39 322.0 23.1 205 184-432 18-240 (257)
366 PRK14248 phosphate ABC transpo 100.0 9.5E-35 2.1E-39 323.8 23.2 216 854-1093 21-248 (268)
367 PRK13649 cbiO cobalt transport 100.0 1.2E-34 2.7E-39 325.0 24.1 204 184-432 20-233 (280)
368 PRK14242 phosphate transporter 100.0 2.3E-34 5.1E-39 318.2 25.9 206 185-432 20-236 (253)
369 PRK09700 D-allose transporter 100.0 5.9E-35 1.3E-39 354.8 23.0 218 855-1094 6-231 (510)
370 cd03299 ABC_ModC_like Archeal 100.0 1.7E-34 3.6E-39 315.6 24.2 204 186-432 14-218 (235)
371 PRK14262 phosphate ABC transpo 100.0 1.4E-34 3E-39 319.5 23.7 214 855-1092 4-229 (250)
372 PRK14272 phosphate ABC transpo 100.0 1.6E-34 3.4E-39 319.4 24.2 204 880-1093 17-232 (252)
373 cd03213 ABCG_EPDR ABCG transpo 100.0 9.8E-35 2.1E-39 307.7 21.5 190 854-1090 3-194 (194)
374 cd03231 ABC_CcmA_heme_exporter 100.0 5.8E-35 1.3E-39 311.4 19.8 185 879-1080 12-198 (201)
375 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.3E-34 2.9E-39 363.8 26.5 205 184-433 466-673 (686)
376 PRK14236 phosphate transporter 100.0 2.7E-34 5.9E-39 320.6 26.0 217 853-1093 24-252 (272)
377 cd03225 ABC_cobalt_CbiO_domain 100.0 8.2E-35 1.8E-39 313.0 21.0 194 184-421 14-211 (211)
378 PRK14268 phosphate ABC transpo 100.0 1.6E-34 3.5E-39 320.2 23.9 206 184-432 25-241 (258)
379 PRK14263 phosphate ABC transpo 100.0 1.5E-34 3.3E-39 320.4 23.7 208 878-1093 19-241 (261)
380 PRK13543 cytochrome c biogenes 100.0 8.7E-35 1.9E-39 313.2 21.1 201 854-1081 11-211 (214)
381 PRK14271 phosphate ABC transpo 100.0 1.9E-34 4.2E-39 322.0 24.6 237 854-1111 21-269 (276)
382 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-34 2.6E-39 311.6 22.1 195 189-426 16-211 (211)
383 PRK10584 putative ABC transpor 100.0 1.6E-34 3.4E-39 314.6 23.3 198 184-425 23-227 (228)
384 PRK13538 cytochrome c biogenes 100.0 6.3E-35 1.4E-39 312.0 19.8 188 879-1080 13-202 (204)
385 PRK14253 phosphate ABC transpo 100.0 1.6E-34 3.5E-39 318.8 23.7 214 855-1092 4-228 (249)
386 PRK13638 cbiO cobalt transport 100.0 1.3E-34 2.9E-39 323.0 23.3 205 184-432 14-224 (271)
387 COG0444 DppD ABC-type dipeptid 100.0 2.1E-34 4.6E-39 312.7 23.9 206 880-1093 18-239 (316)
388 cd03235 ABC_Metallic_Cations A 100.0 9.1E-35 2E-39 313.1 20.8 200 184-426 12-213 (213)
389 COG1129 MglA ABC-type sugar tr 100.0 1.1E-34 2.4E-39 334.8 22.8 225 870-1103 11-242 (500)
390 COG4598 HisP ABC-type histidin 100.0 2.2E-35 4.8E-40 288.9 14.4 209 874-1093 13-237 (256)
391 PRK14258 phosphate ABC transpo 100.0 2E-34 4.4E-39 319.8 24.1 222 854-1093 7-241 (261)
392 PRK09984 phosphonate/organopho 100.0 1.3E-34 2.8E-39 321.8 22.5 216 184-431 17-240 (262)
393 TIGR01166 cbiO cobalt transpor 100.0 9.4E-35 2E-39 307.2 20.3 178 880-1067 5-188 (190)
394 PRK10982 galactose/methyl gala 100.0 1E-34 2.3E-39 351.0 23.5 209 877-1094 8-220 (491)
395 PRK14249 phosphate ABC transpo 100.0 1.9E-34 4.2E-39 318.4 23.7 203 880-1093 17-231 (251)
396 PRK10253 iron-enterobactin tra 100.0 1.4E-34 3.1E-39 321.7 22.8 210 184-432 20-232 (265)
397 PRK15112 antimicrobial peptide 100.0 2.1E-34 4.5E-39 320.7 24.0 207 184-432 26-238 (267)
398 PRK13642 cbiO cobalt transport 100.0 4.4E-34 9.5E-39 319.6 26.7 205 184-432 20-228 (277)
399 PRK10575 iron-hydroxamate tran 100.0 1.3E-34 2.8E-39 322.1 22.3 210 184-432 24-236 (265)
400 PRK11176 lipid transporter ATP 100.0 5.2E-33 1.1E-37 343.8 39.0 213 853-1092 340-562 (582)
401 PRK14247 phosphate ABC transpo 100.0 2.7E-34 5.8E-39 317.2 24.6 209 184-432 16-233 (250)
402 COG1132 MdlB ABC-type multidru 100.0 1.4E-34 3.1E-39 356.0 24.9 209 183-433 341-552 (567)
403 PRK14254 phosphate ABC transpo 100.0 1.8E-34 3.9E-39 323.5 23.4 214 854-1092 39-264 (285)
404 PRK14267 phosphate ABC transpo 100.0 2.3E-34 4.9E-39 318.3 23.9 209 184-432 17-236 (253)
405 TIGR03375 type_I_sec_LssB type 100.0 2.5E-33 5.3E-38 352.9 36.3 212 853-1092 462-683 (694)
406 PRK03695 vitamin B12-transport 100.0 2.2E-34 4.8E-39 317.0 23.5 209 882-1104 11-231 (248)
407 PRK14275 phosphate ABC transpo 100.0 2E-34 4.3E-39 323.5 23.5 216 854-1093 39-266 (286)
408 PRK10771 thiQ thiamine transpo 100.0 2.6E-34 5.7E-39 313.5 23.7 201 189-432 17-218 (232)
409 TIGR00968 3a0106s01 sulfate AB 100.0 2.7E-34 5.9E-39 314.3 23.9 206 184-432 13-219 (237)
410 PRK15093 antimicrobial peptide 100.0 4.6E-34 1E-38 326.4 26.7 214 184-432 20-247 (330)
411 PRK14264 phosphate ABC transpo 100.0 2.3E-34 5E-39 325.8 24.0 230 854-1104 45-301 (305)
412 TIGR02633 xylG D-xylose ABC tr 100.0 1.5E-34 3.2E-39 350.6 24.0 209 879-1094 13-227 (500)
413 PRK11231 fecE iron-dicitrate t 100.0 1.7E-34 3.6E-39 319.6 22.2 209 184-432 15-226 (255)
414 TIGR01978 sufC FeS assembly AT 100.0 3.5E-34 7.5E-39 315.0 24.5 213 184-432 13-233 (243)
415 TIGR01846 type_I_sec_HlyB type 100.0 2.6E-33 5.6E-38 352.4 35.8 214 852-1093 453-676 (694)
416 PRK14261 phosphate ABC transpo 100.0 2.4E-34 5.3E-39 318.0 23.3 216 854-1093 6-233 (253)
417 PRK10419 nikE nickel transport 100.0 3.6E-34 7.8E-39 318.8 24.8 204 880-1094 25-238 (268)
418 PRK10744 pstB phosphate transp 100.0 5.7E-34 1.2E-38 316.2 26.3 206 185-432 27-243 (260)
419 PRK14251 phosphate ABC transpo 100.0 2.5E-34 5.5E-39 317.6 23.3 215 854-1092 4-230 (251)
420 PRK11174 cysteine/glutathione 100.0 5.2E-35 1.1E-39 361.9 19.8 211 853-1093 348-568 (588)
421 COG4525 TauB ABC-type taurine 100.0 2.1E-34 4.5E-39 286.2 20.0 205 184-433 18-224 (259)
422 PRK14274 phosphate ABC transpo 100.0 6.9E-34 1.5E-38 315.4 26.7 207 184-432 25-242 (259)
423 PRK14257 phosphate ABC transpo 100.0 6.2E-34 1.4E-38 324.0 26.9 211 184-432 95-312 (329)
424 PRK10247 putative ABC transpor 100.0 1.2E-34 2.7E-39 314.4 20.2 210 854-1091 7-221 (225)
425 cd03252 ABCC_Hemolysin The ABC 100.0 8.2E-35 1.8E-39 318.7 18.9 196 880-1092 15-220 (237)
426 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-34 3E-39 350.9 22.7 212 854-1094 11-226 (510)
427 TIGR03873 F420-0_ABC_ATP propo 100.0 2.8E-34 6E-39 318.0 23.1 209 184-432 14-225 (256)
428 cd03262 ABC_HisP_GlnQ_permease 100.0 1.2E-34 2.7E-39 312.1 19.8 195 184-422 13-213 (213)
429 PRK11288 araG L-arabinose tran 100.0 1.7E-34 3.6E-39 349.9 23.2 215 855-1091 5-223 (501)
430 COG0444 DppD ABC-type dipeptid 100.0 6.5E-34 1.4E-38 308.9 25.3 212 183-432 17-242 (316)
431 PRK13645 cbiO cobalt transport 100.0 2.1E-34 4.6E-39 324.3 22.4 206 184-432 24-239 (289)
432 PRK10790 putative multidrug tr 100.0 2.6E-34 5.7E-39 355.7 25.3 206 185-433 355-563 (592)
433 PRK11176 lipid transporter ATP 100.0 2.7E-34 5.8E-39 355.3 25.3 209 184-433 356-567 (582)
434 PRK14255 phosphate ABC transpo 100.0 4.3E-34 9.3E-39 315.9 24.0 215 854-1092 5-231 (252)
435 PRK14265 phosphate ABC transpo 100.0 3.4E-34 7.4E-39 319.8 23.1 216 853-1093 19-254 (274)
436 TIGR01277 thiQ thiamine ABC tr 100.0 4.9E-34 1.1E-38 307.3 23.4 199 186-427 13-212 (213)
437 PRK14235 phosphate transporter 100.0 5.4E-34 1.2E-38 317.3 24.4 208 184-432 32-250 (267)
438 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.5E-34 5.4E-39 363.0 24.5 206 184-433 492-700 (710)
439 PRK10418 nikD nickel transport 100.0 4.9E-34 1.1E-38 315.5 23.6 206 185-432 17-229 (254)
440 COG4148 ModC ABC-type molybdat 100.0 5.6E-35 1.2E-39 305.4 15.0 196 189-433 16-218 (352)
441 PRK14238 phosphate transporter 100.0 3.8E-34 8.2E-39 319.1 22.8 216 854-1093 24-251 (271)
442 COG1132 MdlB ABC-type multidru 100.0 8.3E-35 1.8E-39 358.2 19.2 213 852-1093 326-548 (567)
443 TIGR02323 CP_lyasePhnK phospho 100.0 4E-34 8.7E-39 316.3 22.6 202 880-1092 16-233 (253)
444 PRK14243 phosphate transporter 100.0 4E-34 8.6E-39 317.9 22.6 214 854-1092 10-243 (264)
445 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.1E-34 4.6E-39 319.7 20.3 212 854-1094 2-222 (275)
446 CHL00131 ycf16 sulfate ABC tra 100.0 6E-34 1.3E-38 314.8 23.8 220 855-1093 8-237 (252)
447 PRK14241 phosphate transporter 100.0 7E-34 1.5E-38 315.2 24.2 208 184-432 17-241 (258)
448 PRK14269 phosphate ABC transpo 100.0 7.6E-34 1.7E-38 312.6 24.2 208 184-432 15-229 (246)
449 PRK14270 phosphate ABC transpo 100.0 8.7E-34 1.9E-38 313.2 24.7 207 184-432 17-234 (251)
450 KOG0056 Heavy metal exporter H 100.0 8.2E-35 1.8E-39 321.4 16.3 251 106-433 500-761 (790)
451 PRK14237 phosphate transporter 100.0 1.8E-33 3.9E-38 313.2 27.3 207 184-432 33-250 (267)
452 PRK13545 tagH teichoic acids e 100.0 5.4E-34 1.2E-38 332.4 24.1 203 880-1104 37-239 (549)
453 TIGR00958 3a01208 Conjugate Tr 100.0 3.4E-33 7.3E-38 351.1 33.1 211 853-1092 477-697 (711)
454 PRK13539 cytochrome c biogenes 100.0 2.4E-34 5.2E-39 308.1 19.4 186 879-1081 14-199 (207)
455 PRK14259 phosphate ABC transpo 100.0 8.1E-34 1.8E-38 316.1 24.4 205 184-432 26-252 (269)
456 PRK14256 phosphate ABC transpo 100.0 1.1E-33 2.4E-38 312.6 25.1 208 184-432 17-235 (252)
457 cd03297 ABC_ModC_molybdenum_tr 100.0 5.4E-34 1.2E-38 307.3 22.1 192 189-426 16-214 (214)
458 cd03251 ABCC_MsbA MsbA is an e 100.0 1.1E-34 2.4E-39 317.0 17.0 195 881-1092 16-220 (234)
459 PRK11701 phnK phosphonate C-P 100.0 1E-33 2.2E-38 313.8 24.8 207 184-432 19-240 (258)
460 TIGR00958 3a01208 Conjugate Tr 100.0 4.5E-34 9.8E-39 358.9 24.7 206 184-433 494-702 (711)
461 PRK14246 phosphate ABC transpo 100.0 8.5E-34 1.8E-38 313.7 23.9 206 878-1093 21-237 (257)
462 cd03230 ABC_DR_subfamily_A Thi 100.0 3.4E-34 7.3E-39 298.1 19.4 157 880-1083 13-171 (173)
463 TIGR03375 type_I_sec_LssB type 100.0 5.3E-34 1.1E-38 358.9 25.0 208 184-433 478-688 (694)
464 cd03213 ABCG_EPDR ABCG transpo 100.0 1.3E-33 2.8E-38 299.1 24.1 171 184-426 22-194 (194)
465 PRK14248 phosphate ABC transpo 100.0 2.9E-33 6.3E-38 311.9 28.1 207 184-432 34-251 (268)
466 PRK14245 phosphate ABC transpo 100.0 9.1E-34 2E-38 312.9 23.6 206 184-432 16-233 (250)
467 TIGR02982 heterocyst_DevA ABC 100.0 1.6E-33 3.5E-38 304.8 25.0 196 184-422 18-219 (220)
468 PRK11160 cysteine/glutathione 100.0 6.2E-34 1.3E-38 349.9 24.6 201 184-433 353-562 (574)
469 cd03245 ABCC_bacteriocin_expor 100.0 2.4E-34 5.1E-39 311.5 18.4 195 880-1090 17-220 (220)
470 PRK14266 phosphate ABC transpo 100.0 8E-34 1.7E-38 313.4 22.7 207 880-1093 16-230 (250)
471 PRK14239 phosphate transporter 100.0 1.3E-33 2.7E-38 312.3 24.3 207 184-432 18-235 (252)
472 PRK10790 putative multidrug tr 100.0 2E-34 4.4E-39 356.7 20.0 211 853-1093 339-559 (592)
473 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.8E-34 6.1E-39 314.7 18.8 192 880-1092 16-221 (238)
474 PRK13546 teichoic acids export 100.0 1.8E-33 3.9E-38 311.3 25.3 204 879-1104 36-239 (264)
475 PRK09580 sufC cysteine desulfu 100.0 1.1E-33 2.3E-38 312.1 23.2 207 880-1092 14-230 (248)
476 cd03254 ABCC_Glucan_exporter_l 100.0 3.2E-34 6.9E-39 312.4 18.7 195 881-1091 17-220 (229)
477 TIGR01189 ccmA heme ABC export 100.0 3.5E-34 7.7E-39 304.8 18.6 183 879-1078 12-196 (198)
478 TIGR01193 bacteriocin_ABC ABC- 100.0 5.6E-34 1.2E-38 359.4 23.8 208 184-433 487-697 (708)
479 PRK14244 phosphate ABC transpo 100.0 1.4E-33 3E-38 311.6 23.6 208 184-432 18-236 (251)
480 PRK13547 hmuV hemin importer A 100.0 1.2E-33 2.5E-38 314.4 22.9 213 184-432 14-243 (272)
481 PRK09544 znuC high-affinity zi 100.0 6.2E-34 1.3E-38 313.3 20.4 209 855-1104 5-218 (251)
482 PRK10419 nikE nickel transport 100.0 9.4E-34 2E-38 315.4 22.1 207 184-432 25-240 (268)
483 PRK14262 phosphate ABC transpo 100.0 2E-33 4.4E-38 310.2 24.5 207 184-432 16-233 (250)
484 PRK14240 phosphate transporter 100.0 2.2E-33 4.7E-38 310.0 24.7 206 185-432 17-233 (250)
485 cd03229 ABC_Class3 This class 100.0 4.4E-34 9.5E-39 298.6 18.1 159 880-1083 13-177 (178)
486 TIGR02203 MsbA_lipidA lipid A 100.0 4.9E-33 1.1E-37 343.6 30.6 214 853-1093 329-552 (571)
487 TIGR03771 anch_rpt_ABC anchore 100.0 1.2E-33 2.7E-38 306.1 22.1 211 888-1111 1-216 (223)
488 PRK14275 phosphate ABC transpo 100.0 6E-34 1.3E-38 319.7 20.4 207 184-432 52-269 (286)
489 TIGR02324 CP_lyasePhnL phospho 100.0 1E-33 2.3E-38 307.3 21.4 190 880-1080 21-222 (224)
490 PRK03695 vitamin B12-transport 100.0 1.6E-33 3.6E-38 310.0 23.1 201 186-432 11-221 (248)
491 cd03252 ABCC_Hemolysin The ABC 100.0 1.1E-33 2.3E-38 309.8 21.6 206 184-433 15-225 (237)
492 PRK14272 phosphate ABC transpo 100.0 2.7E-33 5.9E-38 309.6 25.0 208 184-432 17-235 (252)
493 PRK14252 phosphate ABC transpo 100.0 1.8E-33 3.9E-38 313.1 23.5 217 853-1093 15-245 (265)
494 COG0396 sufC Cysteine desulfur 100.0 4.4E-33 9.4E-38 285.9 24.2 226 855-1104 4-236 (251)
495 COG4152 ABC-type uncharacteriz 100.0 5E-34 1.1E-38 293.3 17.3 209 182-435 13-221 (300)
496 COG4987 CydC ABC-type transpor 100.0 4.8E-34 1.1E-38 323.7 18.9 202 183-433 350-561 (573)
497 PRK13540 cytochrome c biogenes 100.0 7.5E-34 1.6E-38 302.7 19.3 183 879-1078 13-197 (200)
498 PRK14236 phosphate transporter 100.0 5.7E-33 1.2E-37 310.0 27.2 206 185-432 39-255 (272)
499 TIGR03269 met_CoM_red_A2 methy 100.0 1.3E-33 2.8E-38 343.9 23.6 204 879-1092 12-253 (520)
500 COG4181 Predicted ABC-type tra 100.0 1.4E-33 3.1E-38 274.6 19.1 201 180-424 19-226 (228)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.7e-192 Score=1738.31 Aligned_cols=1009 Identities=56% Similarity=0.946 Sum_probs=940.4
Q ss_pred cCchhhhHHHHHhhCCChhhhhhccccccccCCccceeeeecCCcChhhhHHHHHHHHhhhhhcHHHHHHHHHHHhhhcC
Q 001228 51 QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130 (1119)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (1119)
+||||+++|||+|||||++| +++.+.. + .++|+.++++.+++.++++..+..++|+|+++.++++|++++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~-~-----~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~- 81 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIF-E-----SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV- 81 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhc-c-----CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc-
Confidence 45999999999999999999 5554321 1 259999999999999999999999999999999999999998
Q ss_pred CCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCCH
Q 001228 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGK 210 (1119)
Q Consensus 131 ~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 210 (1119)
++|.++++++++.++++++.+ ||+.|...+.++..+...+.. ++...+||+|+||.++||+|++++|||||||
T Consensus 82 -~~p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ 154 (1391)
T KOG0065|consen 82 -ELPTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGK 154 (1391)
T ss_pred -cCCceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCch
Confidence 899999999999999998876 999999999999887766654 5566789999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHH
Q 001228 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290 (1119)
Q Consensus 211 STLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 290 (1119)
||||++|+|.++..+...|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ ++.|+|+
T Consensus 155 ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~ 231 (1391)
T KOG0065|consen 155 TTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREK 231 (1391)
T ss_pred HHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHH
Confidence 9999999999998877889999999999999999999999999999999999999999999999999887 5566655
Q ss_pred hcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCC
Q 001228 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370 (1119)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPt 370 (1119)
.. ..+|++++++||++|+||+|||+++||+||||||||+||++++++++++||||+|
T Consensus 232 ~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 232 LA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred HH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 32 2589999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhH
Q 001228 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVAD 450 (1119)
Q Consensus 371 sgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad 450 (1119)
+|||++|+++|++.||+++|..+.|++++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++||
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD 368 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHH
Q 001228 451 FLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAR 530 (1119)
Q Consensus 451 fl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R 530 (1119)
|++++++++++.++|..+..|+.+.+++||.+.|.+++.++++..+++.++++++.++.++..++|..+.|+|+++|+.|
T Consensus 369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R 448 (1391)
T KOG0065|consen 369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIR 448 (1391)
T ss_pred HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Q 001228 531 EWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610 (1119)
Q Consensus 531 ~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~ 610 (1119)
+|++++||.+++++++++.+++++++|++|+++.+ .+..++..+.|++||++++.+|++++++.++++++|||+|||+
T Consensus 449 ~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 449 EFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred HHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhc
Confidence 99999999999999999999999999999999985 5667788999999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 001228 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLG 690 (1119)
Q Consensus 611 ~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~ 690 (1119)
..||++|+++++.+++++|+.++++++|.+|+||++|+.+++++||.+|++++++++++.++|++++++++++.+|+++|
T Consensus 527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g 606 (1391)
T KOG0065|consen 527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG 606 (1391)
T ss_pred ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCccccCCCCCCC------------cccchhhHH
Q 001228 691 TFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSI------------NQPTIGKVL 758 (1119)
Q Consensus 691 ~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~------------~~~~~G~~~ 758 (1119)
++.++++.+++||+|+..+||+||+|++|++|++|+++++++|||++++|+|.+.+|.+ ...+.|..+
T Consensus 607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~ 686 (1391)
T KOG0065|consen 607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDY 686 (1391)
T ss_pred HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceE
Confidence 99999999999999999999999999999999999999999999999999998433321 235678889
Q ss_pred hhhcCcc-----ccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhccc-ccccchhhhhcccc
Q 001228 759 LKIRGFS-----TESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG-HEAEGMQMAVRSSS 832 (1119)
Q Consensus 759 l~~~~~~-----~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 832 (1119)
+..+++. +..+|+|+++|+++||.++|++++++++.|+++..+....+..+......... .... .+..
T Consensus 687 v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~- 760 (1391)
T KOG0065|consen 687 VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGSS-----SEIE- 760 (1391)
T ss_pred EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcccc-----cccc-
Confidence 9998888 88899999999999999999999999999999999888877766554332211 0000 0000
Q ss_pred cccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHh
Q 001228 833 KTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV 912 (1119)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~ 912 (1119)
......+.+.+++++|++|..++++|+.|.+++|.+++..| +++++|+|||+.++||.++||||+||||||||||+
T Consensus 761 -~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdv 836 (1391)
T KOG0065|consen 761 -KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDV 836 (1391)
T ss_pred -ccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHH
Confidence 00011111356789999999999999999999999988777 67789999999999999999999999999999999
Q ss_pred HcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC
Q 001228 913 LAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992 (1119)
Q Consensus 913 L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~ 992 (1119)
|+||+++|.++|+|.|+|+|++++.++|.+|||+|+|.|.+.+||+|.|.|+|++|++.+++.+++.++++++++.++|+
T Consensus 837 LA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~ 916 (1391)
T KOG0065|consen 837 LAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK 916 (1391)
T ss_pred HhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHH
Q 001228 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1071 (1119)
Q Consensus 993 ~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p-~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1071 (1119)
+++|..+|.|| ++||++|||||+||++|++|| .||||||||||||++++..|++++|+++++|+|||||+||||.+++
T Consensus 917 ~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~if 995 (1391)
T KOG0065|consen 917 EYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIF 995 (1391)
T ss_pred hhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHH
Confidence 99999999999 899999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HhhceEeEEecCcEEEEecCCCCChHHHHHHhhhhcCCCccCCCC
Q 001228 1072 EAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPALSVD 1116 (1119)
Q Consensus 1072 ~~~d~~l~l~~gG~v~~~g~~~~~~~~l~~~f~~~i~g~~~~~~~ 1116 (1119)
+.||++++|++||++||.||+|++++++++||| +++|+++++++
T Consensus 996 e~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFe-s~~~~~~~~~~ 1039 (1391)
T KOG0065|consen 996 EAFDELLLLKRGGQTVYFGPLGENSSKLIEYFE-SIGGVKCISDE 1039 (1391)
T ss_pred HHHhHHHHHhcCCeEEEecCcccccHHHHHHHH-hcCCccCCCCC
Confidence 999999999999999999999999999999999 99999977765
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.3e-179 Score=1741.50 Aligned_cols=1093 Identities=63% Similarity=1.046 Sum_probs=961.5
Q ss_pred cccccccccccccCcccccccccccccccccccccCCCcccccC--------CccCchhhhHHHHHhhCCChhhhhhccc
Q 001228 5 VADDLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRS--------ERQDDEEELRWAAIERLPTYDRLKKGML 76 (1119)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (1119)
.|++|+||+| +++++ +.|.. +++|++. ..|||||+|+|||+||||||+|+|++++
T Consensus 4 ~~~~~~~~~~----------~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (1470)
T PLN03140 4 RGGSMRRSIS----------RSVSR------SSRNM-EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIM 66 (1470)
T ss_pred CcccHHHHHH----------HHhhh------hhhhh-hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhh
Confidence 5667999998 33322 44433 4566331 1278999999999999999999999999
Q ss_pred cccc-cCCccc---eeeeecCCcChhhhHHHHHHHHhhhhhcHHHHHHHHHHHhhhcCCCCCccEEEEeeeEEEEEEecC
Q 001228 77 NQVL-EDGKVV---KHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152 (1119)
Q Consensus 77 ~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~l~v~~~~~~~ 152 (1119)
.... ++|... ..++|+++|+.++++.+++++++++++|+++|++++++|.+++|+++|++||+|+||+|+++++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~ 146 (1470)
T PLN03140 67 KSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIG 146 (1470)
T ss_pred hcccccccccccccccccccccCChHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCC
Confidence 6421 111111 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEE
Q 001228 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232 (1119)
Q Consensus 153 ~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~ 232 (1119)
++.+||++|.+.+.++.+....+...+++.+++||+||||.++||++++|+|||||||||||++|+|+++++.+++|+|.
T Consensus 147 ~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~ 226 (1470)
T PLN03140 147 SRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEIT 226 (1470)
T ss_pred cccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEE
Confidence 99999999999999887766555433445568899999999999999999999999999999999999988777899999
Q ss_pred ECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhcc
Q 001228 233 YCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312 (1119)
Q Consensus 233 ~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1119)
|||+++++...++.++||+|+|.|++++||+|||.|+++|++.+.++++..++++++++.++.|+.+++.+|++...++.
T Consensus 227 ~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~ 306 (1470)
T PLN03140 227 YNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGV 306 (1470)
T ss_pred ECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcc
Confidence 99999887766788999999999999999999999999998877766666677788888888888899999999888888
Q ss_pred chhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 001228 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392 (1119)
Q Consensus 313 ~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~ 392 (1119)
+.+..++++++.+||++|+||.||+++.|||||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..
T Consensus 307 ~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~ 386 (1470)
T PLN03140 307 KSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLT 386 (1470)
T ss_pred hhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCC
Q 001228 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPY 472 (1119)
Q Consensus 393 ~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~ 472 (1119)
++|+|+++|||+++++++||+|++|++|+++|+||++++.+||+++||+||+++|+|||+++++++++++++|.....|+
T Consensus 387 g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~ 466 (1470)
T PLN03140 387 EATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPY 466 (1470)
T ss_pred CCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999988888887767788
Q ss_pred CCCChhHHHHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 001228 473 RYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFM 552 (1119)
Q Consensus 473 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ 552 (1119)
++.++++|+++|++++.++++.+++..+.++++.++.....++|..++|+|++.|++|+|++++||+.++++|+++.+++
T Consensus 467 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ 546 (1470)
T PLN03140 467 RYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIV 546 (1470)
T ss_pred ccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88899999999999999988888877776666556666666779999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHH
Q 001228 553 SLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632 (1119)
Q Consensus 553 ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~ 632 (1119)
|+++|++||+++++..+..+++.+.|++||++++.+|++++++.+++.+||||+|||+.+||++|+|+++.++.++|+.+
T Consensus 547 ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~ 626 (1470)
T PLN03140 547 AAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISI 626 (1470)
T ss_pred HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999877655566788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchH
Q 001228 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEP 712 (1119)
Q Consensus 633 ~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~ 712 (1119)
+++++|++++|||+|+.+++++||.++++++++++++.++|++++++++++.+|+++++++++++++|+||+++.++||+
T Consensus 627 i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~ 706 (1470)
T PLN03140 627 IESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN 706 (1470)
T ss_pred HHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHcHHHHHHHHHHHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHH
Q 001228 713 FLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAA 792 (1119)
Q Consensus 713 ~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~ 792 (1119)
||+|++|+||++|+++++++|||.+.+|.+..+.+ ...+.|..+|+.+++..++.|+|+++++|++|+++|+++++++
T Consensus 707 w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~--~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~ 784 (1470)
T PLN03140 707 WWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD--NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLA 784 (1470)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhccCccccCcccCC--CCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998886432221 2457899999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCcceeeccchhhhcc--cc----c-ccchh---hhh--cc-c-------ccc-cccccccccCccccccc
Q 001228 793 LAYLNPIGDSNSTVIEEDGEKQRAS--GH----E-AEGMQ---MAV--RS-S-------SKT-VGAAQNVTNRGMILPFQ 851 (1119)
Q Consensus 793 l~~~~~~~~~~~~~~~~~~~~~~~~--~~----~-~~~~~---~~~--~~-~-------~~~-~~~~~~~~~~~~~~~~~ 851 (1119)
++++++..........+........ .. . .+... ... +. . ... .........+++++|+.
T Consensus 785 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1470)
T PLN03140 785 LTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFT 864 (1470)
T ss_pred HHhcCccCCCCccccccchhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 9999876554433221111100000 00 0 00000 000 00 0 000 00001123456778999
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
|.+++|+|++|+++++.++++.+..++++++|+|||++++||+++||+|||||||||||++|+|+.++|..+|+|.++|.
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~ 944 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 944 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc
Confidence 99999999999999988777777777777899999999999999999999999999999999999877778999999998
Q ss_pred cCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 932 PKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 932 ~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
+.....+++.+|||+|++.+++.+||+|++.|++.++.+.....+++.+.++++++.++|.++.|+.+|.+++++|||||
T Consensus 945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140 945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence 87655667789999999999999999999999988776555555566678999999999999999999888778999999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+||||++|||+.++++.||++++|.+||+++|.|+
T Consensus 1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 99999999999999999999999999999999999999999988999999999998778899999999988899999999
Q ss_pred CCCChHHHHHHhhhhcCCCccCCCCC
Q 001228 1092 LGHESHKLIEYFEVSIPFFPALSVDG 1117 (1119)
Q Consensus 1092 ~~~~~~~l~~~f~~~i~g~~~~~~~~ 1117 (1119)
.+.+++++++||+ +++|+|+||++.
T Consensus 1105 ~~~~~~~~~~yF~-~~~g~~~~p~~~ 1129 (1470)
T PLN03140 1105 LGRNSHKIIEYFE-AIPGVPKIKEKY 1129 (1470)
T ss_pred cccccccHHHHHH-hcCCCCCCCCCC
Confidence 9999999999999 899999998764
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.5e-137 Score=1357.59 Aligned_cols=959 Identities=33% Similarity=0.545 Sum_probs=778.0
Q ss_pred hhcHHHHHHHHHHHhhhcCCCCC--ccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeec
Q 001228 112 EEDNEKFLKRIRHRTDRVGIEIP--KIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKD 189 (1119)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~p--~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 189 (1119)
+.|++++++.++++.++.+...| +++|+|+||+|++ ...+...+||+.|.+.+......... ...+++++++||+|
T Consensus 2 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~iL~~ 79 (1394)
T TIGR00956 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKL-KKFRDTKTFDILKP 79 (1394)
T ss_pred CCCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHh-cccCCCCcceeeeC
Confidence 36778888776666666665555 9999999999999 44566679999999888766433221 11233456789999
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-CCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCCHHHHH
Q 001228 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTVRETL 266 (1119)
Q Consensus 190 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l 266 (1119)
||+.++|||+++|+|||||||||||++|+|+.++. ...+|+|.|||+++++.. .++.++||+|+|.|++.+||+|||
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l 159 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHH
Confidence 99999999999999999999999999999997432 125999999999875432 345699999999999999999999
Q ss_pred HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChH
Q 001228 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (1119)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG 346 (1119)
.|+++++.+..+.. ...+.++ .+...+.+++.+||++++||.||++..||||||
T Consensus 160 ~f~~~~~~~~~~~~---~~~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 213 (1394)
T TIGR00956 160 DFAARCKTPQNRPD---GVSREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGG 213 (1394)
T ss_pred HHHHHhCCCCCCCC---CCCHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCcc
Confidence 99988764321100 0000000 012346789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEc
Q 001228 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (1119)
Q Consensus 347 qkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G 426 (1119)
|||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+|
T Consensus 214 erkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred cchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 99999999999999999999999999999999999999999998678999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCCCCcc--
Q 001228 427 PRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKS-- 504 (1119)
Q Consensus 427 ~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-- 504 (1119)
+++++.+||+++||+||++.|+|||+++++++.++ +++.. .+.....+.++|++.|+++..++++.++++.+.++.
T Consensus 294 ~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~-~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 371 (1394)
T TIGR00956 294 PADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPG-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSE 371 (1394)
T ss_pred CHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hcccc-ccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999987643 22211 111123578899999999987776666544321110
Q ss_pred -------------cCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 001228 505 -------------QAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMN 571 (1119)
Q Consensus 505 -------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~ 571 (1119)
...+......++..++|+|++.|++|+|+.++||+..++.++++.+++|+++|++||+.+.+. .
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~ 448 (1394)
T TIGR00956 372 SDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---S 448 (1394)
T ss_pred hhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---h
Confidence 000111233467889999999999999999999999999999999999999999999987543 4
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcch
Q 001228 572 GGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPA 651 (1119)
Q Consensus 572 ~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~ 651 (1119)
+.+.+.|++||++++.+|.++.++..++.+|+||+|||.+++|++++|+++..+.++|+.++.+++|++++|||+|+.++
T Consensus 449 ~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~ 528 (1394)
T TIGR00956 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRT 528 (1394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCccc
Confidence 56778999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHH
Q 001228 652 ASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731 (1119)
Q Consensus 652 ~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~ 731 (1119)
+++||.++++.++++.++.++++++++++++..+|+.+++++++++++|+||+++.++||+||+|++|+||+.|++++++
T Consensus 529 ~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~ 608 (1394)
T TIGR00956 529 AGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccccCC---CCC---------CCc---------ccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHH
Q 001228 732 VNEFLGGRWDAQN---KDP---------SIN---------QPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790 (1119)
Q Consensus 732 ~nef~~~~~~~~~---~~~---------~~~---------~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~ 790 (1119)
+|||.+..|+|.. .++ ..| +.+.|..+|.. ++.....|+|++++++++|+++|.++++
T Consensus 609 ~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~ 687 (1394)
T TIGR00956 609 VNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYI 687 (1394)
T ss_pred HhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999888741 111 112 23578888885 4445567899999999999999999999
Q ss_pred HHHHhcCCCCCCCcceeeccchhhhc--ccccccchhhhhcccccc--ccccccccc-Cccc-ccc--cCceeEEeccce
Q 001228 791 AALAYLNPIGDSNSTVIEEDGEKQRA--SGHEAEGMQMAVRSSSKT--VGAAQNVTN-RGMI-LPF--QPLSLTFDNMSY 862 (1119)
Q Consensus 791 ~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~-~~~--~~~~i~f~~~~y 862 (1119)
++++++++.................. .....+.....++..... .......+. ...+ .|. ....++|+|++|
T Consensus 688 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~ 767 (1394)
T TIGR00956 688 LLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTY 767 (1394)
T ss_pred HHHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEE
Confidence 99999986544332222221111000 000000000000000000 000000000 0000 011 122478899888
Q ss_pred eeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEECCccCChhhhcce
Q 001228 863 FVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKNQETFARV 941 (1119)
Q Consensus 863 ~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~~~~~~~~~~ 941 (1119)
.++.. .+++.+|+|||++|++||++||+|||||||||||++|+|+.++| +.+|+|.+||.+... .+++.
T Consensus 768 ~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~ 837 (1394)
T TIGR00956 768 EVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRS 837 (1394)
T ss_pred EecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcc
Confidence 76421 12457999999999999999999999999999999999987644 456999999998753 46788
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001228 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL 1021 (1119)
Q Consensus 942 ~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL 1021 (1119)
+|||+|++.+++.+||+|++.|++.++.+.....+++.+.++++++.++|.++.|+.++.++. +|||||||||+||+||
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVEL 916 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHH
Confidence 999999999999999999999998887655555566677899999999999999999876543 7999999999999999
Q ss_pred hcCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChHHHH
Q 001228 1022 VANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLI 1100 (1119)
Q Consensus 1022 ~~~p~-illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~~l~ 1100 (1119)
+.+|+ ||||||||||||+.++..|++.|++++++|+|||+|+|||+..+++.||++++|++||+++|.|+.++++++++
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~ 996 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHH
Confidence 99997 99999999999999999999999999888999999999998666788999999998889999999999989999
Q ss_pred HHhhhhcCCCccCCCCC
Q 001228 1101 EYFEVSIPFFPALSVDG 1117 (1119)
Q Consensus 1101 ~~f~~~i~g~~~~~~~~ 1117 (1119)
+||+. .|+++||++.
T Consensus 997 ~yf~~--~G~~~~p~~~ 1011 (1394)
T TIGR00956 997 NYFEK--HGAPKCPEDA 1011 (1394)
T ss_pred HHHHh--cCCCCCCCCC
Confidence 99993 7988898864
No 4
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-85 Score=800.86 Aligned_cols=585 Identities=29% Similarity=0.495 Sum_probs=494.5
Q ss_pred CCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCCHHH
Q 001228 133 IPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212 (1119)
Q Consensus 133 ~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 212 (1119)
...++++|+|+++++... .+..+++|+||||.++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK-----------------------------SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC-----------------------------CCccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 456889999999986531 114578999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhc
Q 001228 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292 (1119)
Q Consensus 213 LL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1119)
||++|+|+..+...++|+|++||++.+....++.+|||.|+|.++|++||+|||.|+|.++.+.. +++.+
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~--- 141 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEE--- 141 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHH---
Confidence 99999999987667899999999888877788999999999999999999999999999876532 11222
Q ss_pred CCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCC
Q 001228 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372 (1119)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsg 372 (1119)
...+++.+++.|||.+|+||+||+...|||||||||||+||..|+.+|.||||||||||
T Consensus 142 ---------------------k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 142 ---------------------KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ---------------------HHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 23468999999999999999999998899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHH
Q 001228 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (1119)
Q Consensus 373 LDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (1119)
||+.++.++++.|+++|+. |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcc--chhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHH
Q 001228 453 QEVTSKK--DQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAR 530 (1119)
Q Consensus 453 ~~v~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R 530 (1119)
.++.+.. .+...... ........++..+...+......... .+. .........++|.|+..+++|
T Consensus 280 l~l~s~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEAV--------RIAKLINKFSQTDNLKKTLEALEKSL----STS-KKVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHHccCCCchhHHhHH--------HHHHHhhhccccchhhhhHHHHhhhc----ccc-cccccccCCcHHHHHHHHHHH
Confidence 9988743 11100000 00000001110000000000000000 000 000111167899999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHhh
Q 001228 531 EWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFA-ENAMTVLRLPIFYKQR 609 (1119)
Q Consensus 531 ~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~-~~~~~~~~~~vf~ker 609 (1119)
.+..++|++.++..|.+|.+++++++|++||+.+.+.. ......|.+||.+.+..|..+. .++.+..++++|.||+
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~ 423 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRET 423 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999864433 3346788888888888776665 5788889999999999
Q ss_pred cCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 001228 610 DHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTL 689 (1119)
Q Consensus 610 ~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~ 689 (1119)
.+++|+.++|++++.+.++|+.++.+++|.+++|||+|++++..+|+.+.+..++...++.+++.+++++.++...|.++
T Consensus 424 ~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~ 503 (613)
T KOG0061|consen 424 SSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSL 503 (613)
T ss_pred hcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCc
Q 001228 690 GTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESN 769 (1119)
Q Consensus 690 ~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~ 769 (1119)
++++++.+++++||+++.+.||+||.|+.|+|+.+|+++++++|||.+....|....+ .++...|..++...++...+
T Consensus 504 ~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~- 581 (613)
T KOG0061|consen 504 GPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN-LCCESTGEDVLKQLGFEDSS- 581 (613)
T ss_pred HHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC-CcccccHHHHHHhcCCcccc-
Confidence 9999999999999999999999999999999999999999999999873333322211 36778888999988887655
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 001228 770 WYWIGVGALTGYSFLFNFLFIAALAYLN 797 (1119)
Q Consensus 770 ~~w~~~~~l~~~~~~f~~l~~~~l~~~~ 797 (1119)
.|.++.++.++.++|++++++++.+..
T Consensus 582 -~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 582 -FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 689999999999999999999998754
No 5
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.6e-84 Score=797.42 Aligned_cols=572 Identities=26% Similarity=0.468 Sum_probs=484.1
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCC
Q 001228 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 181 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 260 (1119)
+.+++||+|+|+.++|||+++|+|||||||||||++|+|+.++....+|+|.+||++++....++.++||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34577999999999999999999999999999999999998875556899999999876544567899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc-
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM- 339 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 339 (1119)
||+|||.|+++++.+... .+.+ ....++.+++.+||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~-------~~~~------------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRV-------TKKE------------------------KRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCC-------CHHH------------------------HHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 999999999877543210 0000 12346889999999999999999864
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
.|||||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999986 4899999999999999999999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|+++|+|+++++.+||+++||+||++.||+||+.++.+....... . .....+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998765422110 0 011234556666665544443333221
Q ss_pred CCCccc---CCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchh
Q 001228 500 PYDKSQ---AHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY 576 (1119)
Q Consensus 500 ~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~ 576 (1119)
...... ..........+..++|.|+..+++|.++..+||+..+..++++.+++++++|++||+.+.+. .+.+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 111000 00011122356788999999999999999999999999999999999999999999987543 345667
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHH
Q 001228 577 FGALFFSLLNIMFNGF-AENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRF 655 (1119)
Q Consensus 577 ~g~lff~ll~~~~~~~-~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f 655 (1119)
.|++|+.++..+|.++ ..+..+..++++|+|||.+++|++++|++++.+.++|+.++.+++|.+++|||+|+++++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 8999999988888765 445667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHh
Q 001228 656 FKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735 (1119)
Q Consensus 656 ~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef 735 (1119)
|.+++++++...++.++++++++++++..+|+.+++++++++++|+||+++.++||+||+|++|+||++|+++++++|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-ccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhc
Q 001228 736 LGGRW-DAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYL 796 (1119)
Q Consensus 736 ~~~~~-~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~ 796 (1119)
.+..+ .|...+....|...|..+++.+|+..++ +|.++++++++.++|.++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~--~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88775 3432221112445689999999987654 58999999999999999999999874
No 6
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5.3e-83 Score=785.71 Aligned_cols=610 Identities=20% Similarity=0.335 Sum_probs=473.0
Q ss_pred CCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCCHH
Q 001228 132 EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKT 211 (1119)
Q Consensus 132 ~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKS 211 (1119)
..++++++|.|+++.+.......+... +...+...-...++.++ ..++++|+|||++++|||+++|+||||||||
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~-~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKS 108 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETRQ-IQERTILNGVTGMASPGEILAVLGPSGSGKS 108 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccc----ccccccccccccccccc-CCCCeeeeCCEEEEECCEEEEEECCCCCCHH
Confidence 345899999999999754210111110 11111100011111112 2346799999999999999999999999999
Q ss_pred HHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHh
Q 001228 212 TLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291 (1119)
Q Consensus 212 TLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 291 (1119)
|||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+.. ....
T Consensus 109 TLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~--- 176 (659)
T PLN03211 109 TLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQ--- 176 (659)
T ss_pred HHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHH---
Confidence 9999999998763 2589999999987542 23569999999999999999999999876542210 0000
Q ss_pred cCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCC
Q 001228 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371 (1119)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPts 371 (1119)
+....++++++.+||++++||.||+...++|||||||||+||++|+.+|+||||||||+
T Consensus 177 ---------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPts 235 (659)
T PLN03211 177 ---------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 235 (659)
T ss_pred ---------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCC
Confidence 01124678999999999999999998899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHH
Q 001228 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADF 451 (1119)
Q Consensus 372 gLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adf 451 (1119)
|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+++|+|+.+++.+||+++||+||++.|||||
T Consensus 236 gLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf 314 (659)
T PLN03211 236 GLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADF 314 (659)
T ss_pred CcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHH
Confidence 9999999999999999987 589999999999988999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC---CCCccc-----CCCC-ccccccccchHHH
Q 001228 452 LQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV---PYDKSQ-----AHPA-SLVKEKYGISKWE 522 (1119)
Q Consensus 452 l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~~~~~-----~~~~-~~~~~~~~~s~~~ 522 (1119)
++++++...+.........+ ...+.+.+.|++... ....+.... .....+ ..+. ......+..++|.
T Consensus 315 ~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (659)
T PLN03211 315 LLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFN 390 (659)
T ss_pred HHHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHH
Confidence 99998764321100000000 011233344432111 111111000 000000 0000 0011224567899
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHH-HHHHHHHHHhhh
Q 001228 523 LFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMF-NGFAENAMTVLR 601 (1119)
Q Consensus 523 ~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~-~~~~~~~~~~~~ 601 (1119)
|+..+++|.+.. +|+..+...|+++.+++|+++|++||+.+ ..+.+...|++||++++.++ +.+..+..+..+
T Consensus 391 Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~e 464 (659)
T PLN03211 391 QFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQE 464 (659)
T ss_pred HHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988 78888888999999999999999999874 23467789999999887655 556777888899
Q ss_pred hhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001228 602 LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR 681 (1119)
Q Consensus 602 ~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~ 681 (1119)
+++|+|||.+++|++++|++++++.++|+.++.+++|++++|||+|+++++++||.+++++++...++.+++++++++++
T Consensus 465 r~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~ 544 (659)
T PLN03211 465 RAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIM 544 (659)
T ss_pred hHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCcc-----ccCCCCCCCcccchhh
Q 001228 682 TEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRW-----DAQNKDPSINQPTIGK 756 (1119)
Q Consensus 682 ~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~~~~~~~~G~ 756 (1119)
+..+|+++++++++++++|+||+++ +||+||+|++|+||++|+++++++|||.+.+. +|.... +....+.
T Consensus 545 ~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~---~~~~~~c 619 (659)
T PLN03211 545 DAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPH---GSDRASC 619 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcc---cCCCCCC
Confidence 9999999999999999999999997 79999999999999999999999999976542 332111 0001111
Q ss_pred HHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 001228 757 VLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLN 797 (1119)
Q Consensus 757 ~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~ 797 (1119)
.++....+. ....|.++++|+++.++|+++++++|++.+
T Consensus 620 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 620 KFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122222222 234788999999999999999999998654
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.3e-81 Score=821.20 Aligned_cols=600 Identities=22% Similarity=0.402 Sum_probs=499.8
Q ss_pred CCCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCC
Q 001228 130 GIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAG 209 (1119)
Q Consensus 130 ~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsG 209 (1119)
.++...+.+.|+|++|+++.....+ +. .....++++|+|||+.++||++++|+||||||
T Consensus 860 ~~~~~~~~~~~~~v~y~v~~~~~~~--------------------~~-~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaG 918 (1470)
T PLN03140 860 VLPFTPLAMSFDDVNYFVDMPAEMK--------------------EQ-GVTEDRLQLLREVTGAFRPGVLTALMGVSGAG 918 (1470)
T ss_pred ccCCCcceEEEEEEEEEEccCcccc--------------------cc-ccCcCCceEeeCcEEEEECCeEEEEECCCCCC
Confidence 3455667899999999986431100 00 11123457999999999999999999999999
Q ss_pred HHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHH
Q 001228 210 KTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289 (1119)
Q Consensus 210 KSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~ 289 (1119)
|||||++|+|+.++. ..+|+|.+||++.+....++.+|||+|+|.|++.+||+|||.|++.++.+.. ....
T Consensus 919 KTTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~-------~~~~- 989 (1470)
T PLN03140 919 KTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE-------VSKE- 989 (1470)
T ss_pred HHHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC-------CCHH-
Confidence 999999999997642 3589999999887544445679999999999999999999999876542210 0000
Q ss_pred HhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCC
Q 001228 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEI 369 (1119)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEP 369 (1119)
+....++++++.+||++++|+.||++..+||||||||||+||++|+.+|++||||||
T Consensus 990 -----------------------~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEP 1046 (1470)
T PLN03140 990 -----------------------EKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046 (1470)
T ss_pred -----------------------HHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 011246789999999999999999888899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC-CeEEEEcCh----hHHHHHHHhc-CC-CC
Q 001228 370 STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE-GQIVYQGPR----DNVLEFFEHM-GF-KC 442 (1119)
Q Consensus 370 tsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~ 442 (1119)
|+|||+.++..+++.|+++++. |+|+|+++|||+.+++++||++++|++ |+++|+|+. +++.+||+++ |+ +|
T Consensus 1047 TsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~ 1125 (1470)
T PLN03140 1047 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKI 1125 (1470)
T ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCC
Confidence 9999999999999999999864 899999999999889999999999996 899999996 6899999998 66 49
Q ss_pred CCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHH
Q 001228 443 PERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWE 522 (1119)
Q Consensus 443 p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 522 (1119)
|+..|||||+.++++..... ....++++.|+.+..+++..+...................+|..++|.
T Consensus 1126 p~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 1193 (1470)
T PLN03140 1126 KEKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWG 1193 (1470)
T ss_pred CCCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHH
Confidence 99999999999997653211 112468888888877665544332111000011111123567889999
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHH-HHHHhhh
Q 001228 523 LFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAE-NAMTVLR 601 (1119)
Q Consensus 523 ~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~-~~~~~~~ 601 (1119)
|++.|++|+++.+||++.+...|+++.+++|+++|++||+.+.+..+.++.+...|++|+++++..++.... ++.+..+
T Consensus 1194 Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~e 1273 (1470)
T PLN03140 1194 QFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVE 1273 (1470)
T ss_pred HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998766556666777999999988887765544 4566779
Q ss_pred hhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001228 602 LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR 681 (1119)
Q Consensus 602 ~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~ 681 (1119)
|++|+|||.+++|++++|+++.++.++|+.++.+++|.+++|||+||.++++.||.++++.++...++.++++++++++|
T Consensus 1274 R~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p 1353 (1470)
T PLN03140 1274 RTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTP 1353 (1470)
T ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCccccCCCCCCCcccchhhHHhhh
Q 001228 682 TEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKI 761 (1119)
Q Consensus 682 ~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~ 761 (1119)
+..+|..++++++.++++|+||+++.++||+||+|+||+||+.|++++++.|||.+....|.+++. .+..+....++..
T Consensus 1354 ~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~ 1432 (1470)
T PLN03140 1354 NQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGG-APDPTIKWYIQDH 1432 (1470)
T ss_pred cHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCC-CCCCcHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999887665544321 0112233445778
Q ss_pred cCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 001228 762 RGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (1119)
Q Consensus 762 ~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~ 798 (1119)
+||.. .|.|.+++++++|.++|.+++++++++++.
T Consensus 1433 ~g~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1433 YGYDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred cCcCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 88864 468899999999999999999999999875
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6e-79 Score=745.71 Aligned_cols=565 Identities=26% Similarity=0.406 Sum_probs=475.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
.++++|+||||.++||.+|||||+|||||||||++||||... ..++|+|.+||++.++...+|.+|||.|+|.|.+++|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 567899999999999999999999999999999999999765 3589999999999987778899999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|||.|.|+|.++.+.+ ....+ ....+|++++.|+|++++|.+||+.. .
T Consensus 881 VrESL~fSA~LRlp~~-------v~~~e------------------------k~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKE-------VSDEE------------------------KYEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCc-------CCHHH------------------------HHHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 9999999999875432 11111 12468999999999999999999987 9
Q ss_pred CCChHHHHHHHHHHHHhcCC-cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC-
Q 001228 342 GISGGQKKRVTTGEMLVGTA-NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE- 419 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p-~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~- 419 (1119)
|||.+||||++||.+|+.+| .||||||||||||+.++..|++.+|++++ .|+||+|+||||+.++++.||++++|++
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999998 6999999999999999999999999965
Q ss_pred CeEEEEcChh----HHHHHHHhcC-CCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHH
Q 001228 420 GQIVYQGPRD----NVLEFFEHMG-FKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIA 494 (1119)
Q Consensus 420 G~iv~~G~~~----~~~~~f~~~G-~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 494 (1119)
|++||.||.. .+++||++.| .+||...|||||+.|+++...+.. ...++++.|++|..+++..
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 8999999974 4677999987 899999999999999987653321 1248899999999988877
Q ss_pred hhhcCCCCcccC-CCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc
Q 001228 495 SDLRVPYDKSQA-HPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573 (1119)
Q Consensus 495 ~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~ 573 (1119)
++++.-.+.... ........+|..+.|.|++.|++|+++..||++.+...|++..++.++++|+.||+.+. +.++.
T Consensus 1076 e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~l 1152 (1391)
T KOG0065|consen 1076 ELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGL 1152 (1391)
T ss_pred HHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHH
Confidence 665432211111 23334456688999999999999999999999999999999999999999999999984 45566
Q ss_pred chhhHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchH
Q 001228 574 SRYFGALFFSLLNIMFNGFA-ENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAA 652 (1119)
Q Consensus 574 ~~~~g~lff~ll~~~~~~~~-~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 652 (1119)
++.++++|.++++...+... .......++-++||||..++|+.++|+++..++++|+.++.+++|.+++||++||...+
T Consensus 1153 qn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a 1232 (1391)
T KOG0065|consen 1153 QNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTA 1232 (1391)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhH
Confidence 77888888887766554333 44555578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHH
Q 001228 653 SRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLV 732 (1119)
Q Consensus 653 ~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 732 (1119)
.+++.+++..+........++.++.+++|+..+|..+.++++.++.+|+||++++..||.||+|+||+||+.|..++++.
T Consensus 1233 ~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~ 1312 (1391)
T KOG0065|consen 1233 SKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLIS 1312 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccCCCCCC----CcccchhhHHhhhcC----ccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 001228 733 NEFLGGRWDAQNKDPS----INQPTIGKVLLKIRG----FSTESNWYWIGVGALTGYSFLFNFLFIAALAYLN 797 (1119)
Q Consensus 733 nef~~~~~~~~~~~~~----~~~~~~G~~~l~~~~----~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~ 797 (1119)
..+++..-.|...+.. .+..+.|+.+...++ +..+..-+ ...+...|.+.+.+++.+.++|.+
T Consensus 1313 ~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~--~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1313 SQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLAT--TACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred HHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcce--eEEEEeeeehHHHHHHHHHHHHHH
Confidence 9998765544322211 133566777766666 33222111 111223455555666666665543
No 9
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.2e-75 Score=769.06 Aligned_cols=562 Identities=25% Similarity=0.371 Sum_probs=464.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
++++|+|||+.++||++++|+|||||||||||++|+|+.++....+|+|.+||++++. ..++.+|||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 3579999999999999999999999999999999999987432347999999998753 346789999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+|||.|+++++.+.. .+..+ ....++++++.+||++++|+.||+.. ++
T Consensus 854 ~E~L~~~a~l~~~~~-------~~~~~------------------------~~~~v~~~l~~l~L~~~~d~~v~~~~-~~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKS-------VSKSE------------------------KMEYVEEVIKLLEMESYADAVVGVPG-EG 901 (1394)
T ss_pred HHHHHHHHHhCCCCC-------CCHHH------------------------HHHHHHHHHHHcCChhhCCCeeCCCC-CC
Confidence 999999887653211 00000 12246789999999999999999643 47
Q ss_pred CChHHHHHHHHHHHHhcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC-
Q 001228 343 ISGGQKKRVTTGEMLVGTAN-VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG- 420 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~-illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G- 420 (1119)
|||||||||+||++|+.+|+ ||||||||+|||+.++..+++.|+++++ .|+|+|+++|||+..+++.||++++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999976 48999999999998888999999999987
Q ss_pred eEEEEcCh----hHHHHHHHhcCC-CCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHh
Q 001228 421 QIVYQGPR----DNVLEFFEHMGF-KCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIAS 495 (1119)
Q Consensus 421 ~iv~~G~~----~~~~~~f~~~G~-~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 495 (1119)
+++|+|+. +++.+||++.|+ +||++.|||||+.|+.+...... ...++.+.|+.+...+...+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 678999999996 99999999999999876532110 01345666666655544333
Q ss_pred hhc---CCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 001228 496 DLR---VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572 (1119)
Q Consensus 496 ~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~ 572 (1119)
++. .+..............++..++|.|++.+++|.++.++|++.+...|+++.+++|+++|++||+.+.+ ..+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHH
Confidence 221 11110100001112246788999999999999999999999999999999999999999999998754 345
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcch
Q 001228 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPI-FYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPA 651 (1119)
Q Consensus 573 ~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~v-f~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~ 651 (1119)
.++..|++|+.++...+.....++.++.++++ |+|||.+++|+.++|++++.+.++|+.++.+++|.+++||++|+.++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 67788888888776655544455556666766 59999999999999999999999999999999999999999999988
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHH
Q 001228 652 ASR-------FFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMM 724 (1119)
Q Consensus 652 ~~~-------f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~ 724 (1119)
+.. |+.+++..++...++.+++.++++++++..+|..++++++.++++|+||+++.++||.||+|++|+||++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 765 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccCCC--------C---------------------C------CCcccchhhHHhhhcCccccCc
Q 001228 725 YGQTSLLVNEFLGGRWDAQNK--------D---------------------P------SINQPTIGKVLLKIRGFSTESN 769 (1119)
Q Consensus 725 y~~~al~~nef~~~~~~~~~~--------~---------------------~------~~~~~~~G~~~l~~~~~~~~~~ 769 (1119)
|++++++.|||.+....|... . + .+|....|..+|+.+++..++
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~- 1364 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSG- 1364 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccc-
Confidence 999999999999887655321 0 0 123356889999998887666
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhc
Q 001228 770 WYWIGVGALTGYSFLFNFLFIAALAYL 796 (1119)
Q Consensus 770 ~~w~~~~~l~~~~~~f~~l~~~~l~~~ 796 (1119)
.|.+++++++|.+++ ++.++++.|.
T Consensus 1365 -~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1365 -RWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred -cccchhhhhHHHHHH-HHHHHhhheE
Confidence 588999999998888 6666667664
No 10
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-75 Score=734.79 Aligned_cols=763 Identities=22% Similarity=0.276 Sum_probs=428.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHH
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+.|+|||+.|++|+++||+||.|||||+||.+|.|+++.. +|+|.++| .+|||+|++|++. .||||
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI~n-gTvre 600 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWIQN-GTVRE 600 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHhhC-CcHHH
Confidence 3799999999999999999999999999999999999875 99999998 4999999999996 59999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
||.|+..+. .+||+..-+.|..+++..+. +.+..|.||+ .+-.||
T Consensus 601 NILFG~~~d--~~rY~~Vi~aC~L~~Dle~L--------------------------------p~GD~TeIGE-rGinLS 645 (1381)
T KOG0054|consen 601 NILFGSPYD--EERYDKVIKACALKKDLEIL--------------------------------PFGDLTEIGE-RGINLS 645 (1381)
T ss_pred hhhcCcccc--HHHHHHHHHHccCHhHHhhc--------------------------------CCCCcceecC-CccCCc
Confidence 999986543 35666555555555544443 4455699997 223389
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~-~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv 423 (1119)
||||||+++|||++.+++|+|||+|.|++|+++..+|.+ +++.+ ..++|+|+++|| -+....+|.|++|++|+|+
T Consensus 646 GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~--L~~KT~ILVTHq--l~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL--LRGKTVILVTHQ--LQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh--hcCCEEEEEeCc--hhhhhhCCEEEEecCCeEe
Confidence 999999999999999999999999999999999999884 55443 347899999986 4788999999999999999
Q ss_pred EEcChhHHHH---HHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCC
Q 001228 424 YQGPRDNVLE---FFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVP 500 (1119)
Q Consensus 424 ~~G~~~~~~~---~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 500 (1119)
.+|+++|+.+ +|+.+ ...+......+ ...+ .+.......+ .+. +.........+. ...
T Consensus 722 ~~Gty~el~~~~~~~~~l-~~~~~~~~~~~-----~~~~----------~~~~~~~~~~-~~~-~~~~~~~~~~~~-~~~ 782 (1381)
T KOG0054|consen 722 ESGTYEELLKSGGDFAEL-AHEEESEQEEE-----ASEK----------DLESGESSRE-SES-RSLESLSSEEEK-SKD 782 (1381)
T ss_pred cccCHHHHHhcchhHHHH-hhccchhhccc-----cccc----------cccccccccc-hhh-hhhhhhcccccc-ccc
Confidence 9999999984 33332 00000000000 0000 0000000000 000 000000000000 000
Q ss_pred CCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCC--CCcchhhH
Q 001228 501 YDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDM--NGGSRYFG 578 (1119)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~--~~~~~~~g 578 (1119)
....+......+.+..|...|..|+.|++..+....--..++.+-..+...++.-.+..||-........ .+...|.+
T Consensus 783 ~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~ 862 (1381)
T KOG0054|consen 783 EKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLG 862 (1381)
T ss_pred ccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHH
Confidence 0000000111122356788899998888652111000000011111111222222223333222111111 12222222
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHH
Q 001228 579 ALFF-SLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFK 657 (1119)
Q Consensus 579 ~lff-~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~ 657 (1119)
...+ ++...++..+..+.+.......-.+-++ -+-..+++.|++||+++ ..||.++
T Consensus 863 vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~---------~ml~~Ilrapm~FFdtT--------------P~GRILN 919 (1381)
T KOG0054|consen 863 VYALLGVASSLLTLLRSFLFAKGGLKASRKLHD---------KLLNSILRAPMSFFDTT--------------PTGRILN 919 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhCcchhcCCC--------------Cccchhh
Confidence 2111 1111111111111111111111000000 12234666777777665 5678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHH
Q 001228 658 QFLAFFSIHNMSLPLYRLVAAVG------RTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731 (1119)
Q Consensus 658 ~~l~~~~~~~~~~~~~~~i~a~~------~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~ 731 (1119)
+|..++...+...+........+ --.+++.....+++.+.. +.++||.-..+|.-.+.-
T Consensus 920 RFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~p---------------l~v~~~~~~~~Y~~tsRe 984 (1381)
T KOG0054|consen 920 RFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIP---------------LGVIYYFVQRYYLATSRE 984 (1381)
T ss_pred hcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH---------------HHHHHHHHHHHHHHHhHH
Confidence 87776665554443322111100 000111111111111111 112233333333332222
Q ss_pred HHHhcCCccccCCCCCCCcccc---hhhHHhhhcCccc------------------------cCcchhhhHHHHHHHHHH
Q 001228 732 VNEFLGGRWDAQNKDPSINQPT---IGKVLLKIRGFST------------------------ESNWYWIGVGALTGYSFL 784 (1119)
Q Consensus 732 ~nef~~~~~~~~~~~~~~~~~~---~G~~~l~~~~~~~------------------------~~~~~w~~~~~l~~~~~~ 784 (1119)
+....+ ....|.+++.. .| +-.+|.|.. .+.|+-+.+-.+...+++
T Consensus 985 LkRLes-----itRSPi~sh~~Etl~G--lsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~ 1057 (1381)
T KOG0054|consen 985 LKRLES-----ITRSPIYSHFSETLQG--LSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVL 1057 (1381)
T ss_pred HHHhhh-----cccchHHHhHHHHhcC--cceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 11111111100 01 011111111 122322222223222222
Q ss_pred HHHHHHHHHHhcCCCCCCC-----cceeeccchhhhc--ccccccchhhhhccccc---ccccccccccCcccccccC--
Q 001228 785 FNFLFIAALAYLNPIGDSN-----STVIEEDGEKQRA--SGHEAEGMQMAVRSSSK---TVGAAQNVTNRGMILPFQP-- 852 (1119)
Q Consensus 785 f~~l~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-- 852 (1119)
+..++.+ +..-....... ++...-....+.. ...+.+..+.+++...+ ..+............+.+|
T Consensus 1058 ~~al~~v-l~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~ 1136 (1381)
T KOG0054|consen 1058 IAALFAV-LLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSK 1136 (1381)
T ss_pred HHHHHHH-HccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCC
Confidence 2222211 11111010010 0000000000000 00001111111111000 0000000000010122233
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|+|+|++-.|.. +-..||+||||+|+|||++||||++|||||||.++|.+... +.+|+|.|||.+
T Consensus 1137 G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvd 1203 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVD 1203 (1381)
T ss_pred CeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCee
Confidence 46899996543321 12359999999999999999999999999999999999876 468999999999
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccC------CCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG------LPG 1003 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~ 1003 (1119)
+.+ ..+|++++.+||+|.+| ++++|.|.|+..+..++.+|++||.++|.+...+..+ .+|
T Consensus 1204 I~~igL~dLRsrlsIIPQdPvLF-----------sGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~eg 1272 (1381)
T KOG0054|consen 1204 ISKIGLHDLRSRLSIIPQDPVLF-----------SGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEG 1272 (1381)
T ss_pred cccccHHHHHhcCeeeCCCCcee-----------cCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCC
Confidence 865 46788999999999865 4555666688888899999999999999765433221 235
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..++|.||||++|+||||+++++||+|||+|+++|+++...|+++||+..+ +||||+|.|+. +....+|+|+||++
T Consensus 1273 G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl--~TVmd~DrVlVld~- 1348 (1381)
T KOG0054|consen 1273 GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRL--NTVMDSDRVLVLDA- 1348 (1381)
T ss_pred CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeecc--chhhhcCeEEEeeC-
Confidence 678999999999999999999999999999999999999999999999874 79999999996 47778999999986
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|+|+++|++.
T Consensus 1349 G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1349 GRVVEFDSPA 1358 (1381)
T ss_pred CeEeecCChH
Confidence 7999888764
No 11
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-74 Score=706.82 Aligned_cols=764 Identities=23% Similarity=0.324 Sum_probs=416.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHG 258 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 258 (1119)
++..||+|+|+.|++|+.++|+|||||||||++++|.+.++|+ +|+|.++|.++.++.. +..+|.|+|+|.+|.
T Consensus 364 pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~ 440 (1228)
T KOG0055|consen 364 PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA 440 (1228)
T ss_pred CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhc
Confidence 4678999999999999999999999999999999999999997 9999999999987653 578999999998886
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.||+|||.|+. |+...++..+++..++. .+. +..|++..||.||+.
T Consensus 441 -~tI~eNI~~G~-------------------------~dat~~~i~~a~k~ana-----~~f---i~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 441 -TTIRENIRYGK-------------------------PDATREEIEEAAKAANA-----HDF---ILKLPDGYDTLVGER 486 (1228)
T ss_pred -ccHHHHHhcCC-------------------------CcccHHHHHHHHHHccH-----HHH---HHhhHHhhcccccCC
Confidence 69999998852 23333333444432221 122 345788999999982
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
.. .|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|++..+ |+|+|+..|..+ +.+.+|+|++|+
T Consensus 487 g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRLS--tIrnaD~I~v~~ 561 (1228)
T KOG0055|consen 487 GV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRLS--TIRNADKIAVME 561 (1228)
T ss_pred CC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeehh--hhhccCEEEEEE
Confidence 22 2999999999999999999999999999999999999999999998765 788888877754 556699999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCCh-hHHH--HhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhch----hhh
Q 001228 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGV-ADFL--QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFH----MGQ 491 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~-adfl--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~ 491 (1119)
+|+|+++|+++|+++. .+. ++.. |+.....+. ... ... ..++.....+.+. ..+
T Consensus 562 ~G~IvE~G~h~ELi~~-----------~G~Y~~lv~~Q~~~~~~~~-~~~---~~~----~~~~~~~s~~~s~~~~~~~~ 622 (1228)
T KOG0055|consen 562 EGKIVEQGTHDELIAL-----------GGIYSSLVRLQELEKAAED-EEE---EES----LKEERSRSLKSSSSSPSLSR 622 (1228)
T ss_pred CCEEEEecCHHHHHhc-----------cchHHHHHHHHhhhhhhhc-ccc---ccc----hhhhhhhccccccccccccC
Confidence 9999999999999862 011 1111 111111110 000 000 0000000000000 000
Q ss_pred h-HHhhh--cCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh---hccccC
Q 001228 492 Q-IASDL--RVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTV---YFRTEM 565 (1119)
Q Consensus 492 ~-~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtv---f~~~~~ 565 (1119)
. ..... ..+.++....+. .......+.|+.++.+ +.+|..+.-.....+.+-....+.+++++.+ |+..+.
T Consensus 623 ~~~~~~~~~~~~~~e~~~~~~--~~~~~~~s~~~i~k~~-~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~ 699 (1228)
T KOG0055|consen 623 GSNRSNLLSVKPEGEDPEEPV--SEEDEKVSFWRIFKLN-KPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDD 699 (1228)
T ss_pred Ccccccccccccccccccccc--ccccccccHHHHHHhc-cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCh
Confidence 0 00000 000000000000 1111233445444433 2233322222222222222233333333332 221111
Q ss_pred CCCCCCCcchhhHHHHHHHHHHH----------HHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHH
Q 001228 566 SVGDMNGGSRYFGALFFSLLNIM----------FNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDS 635 (1119)
Q Consensus 566 ~~~~~~~~~~~~g~lff~ll~~~----------~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~ 635 (1119)
+ ........+..+|.++.... |.-+.+....-.|..
T Consensus 700 ~--~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~-------------------------------- 745 (1228)
T KOG0055|consen 700 D--ELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSM-------------------------------- 745 (1228)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Confidence 1 11111112333333222111 111111111111111
Q ss_pred HHHHhhhhhccCCcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchH
Q 001228 636 TIWVALTYYTIGYDPAA---SRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEP 712 (1119)
Q Consensus 636 ~i~~~i~Y~~~g~~~~~---~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~ 712 (1119)
.|..+.+.=+++..+. ++...++......... .+...++.++..+..+..|+++..
T Consensus 746 -~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~---------------~v~~rl~~vv~~~~~~~~~iiiaf----- 804 (1228)
T KOG0055|consen 746 -MFRALLRQEVGWFDDPENSGALSSRLATDASNVRA---------------AVGDRLSLVVQNIAAVIIGIIIAF----- 804 (1228)
T ss_pred -HHHHHHcCCCcccCCCccchHHHHHHhcchHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 1222222222222111 2222222211110000 111122222222222222222111
Q ss_pred HHHH-----HHhHcHHHHHHHHHHHHHhcCCccccCC-C-C-CC------Cc-----ccchhhHHhhhcCcc-----cc-
Q 001228 713 FLRW-----GYYISPMMYGQTSLLVNEFLGGRWDAQN-K-D-PS------IN-----QPTIGKVLLKIRGFS-----TE- 767 (1119)
Q Consensus 713 ~~~W-----~~~isp~~y~~~al~~nef~~~~~~~~~-~-~-~~------~~-----~~~~G~~~l~~~~~~-----~~- 767 (1119)
|..| +.-+.|+.+....+......+..-++.. . . .. .+ ..+.-..+.+.+.-. ..
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 1112 1122333332222221111110000000 0 0 00 00 000000111110000 00
Q ss_pred -CcchhhhHHHHHHHHHHH---HHHHHHHHHhcCCCCCCCcceeeccc-----hh---hhcc--cccccc-hh--hhhcc
Q 001228 768 -SNWYWIGVGALTGYSFLF---NFLFIAALAYLNPIGDSNSTVIEEDG-----EK---QRAS--GHEAEG-MQ--MAVRS 830 (1119)
Q Consensus 768 -~~~~w~~~~~l~~~~~~f---~~l~~~~l~~~~~~~~~~~~~~~~~~-----~~---~~~~--~~~~~~-~~--~~~~~ 830 (1119)
....|.+++.-+...++| .+.++++...... +........... .. ..+. ..+... .. ..+-.
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~-g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~ 963 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISN-GEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFE 963 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 011233332222222211 1222222222211 100000000000 00 0000 000000 00 00000
Q ss_pred cccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHH
Q 001228 831 SSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM 910 (1119)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl 910 (1119)
.....+........+...|.....|+|+||+|.||..+ +.++|+|+|++|++|+-+||||||||||||++
T Consensus 964 i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI 1033 (1228)
T KOG0055|consen 964 ILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI 1033 (1228)
T ss_pred HhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHH
Confidence 00000001111122333455556799999999988543 46799999999999999999999999999999
Q ss_pred HhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 001228 911 DVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME 987 (1119)
Q Consensus 911 ~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~ 987 (1119)
.+|-+..+ +..|.|.|||.+++. ..+|+.+|.|.|+|.+|. -|++||+.|+. . +++.. ++.++++
T Consensus 1034 ~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~--~---~vs~~----eIi~Aak 1101 (1228)
T KOG0055|consen 1034 SLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS--E---EVSEE----EIIEAAK 1101 (1228)
T ss_pred HHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC--C---CCCHH----HHHHHHH
Confidence 99997665 568999999998754 567889999999999976 49999999981 1 12222 2344444
Q ss_pred HcC-------CCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 001228 988 LVE-------LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060 (1119)
Q Consensus 988 ~~~-------l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi 1060 (1119)
..+ |.+=.|..+|..|. +||||||||++||||+++||+||||||+||.||.++.+.|+++|.+.. .|+|.|
T Consensus 1102 ~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~I 1179 (1228)
T KOG0055|consen 1102 LANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTI 1179 (1228)
T ss_pred HhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEE
Confidence 443 33345677776654 799999999999999999999999999999999999999999999975 599999
Q ss_pred EEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1061 CTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1061 ~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+|+|+++ .+..+|.|.+++ +|+|++.|+.
T Consensus 1180 vIAHRLS--TIqnaD~I~Vi~-~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1180 VIAHRLS--TIQNADVIAVLK-NGKVVEQGTH 1208 (1228)
T ss_pred EEecchh--hhhcCCEEEEEE-CCEEEecccH
Confidence 9999975 788999999997 5899999985
No 12
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3e-71 Score=725.06 Aligned_cols=217 Identities=25% Similarity=0.402 Sum_probs=184.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++ .+++.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~-----------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYS-----------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEEC-----------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 367777765442 012469999999999999999999999999999999999876 4589999999886
Q ss_pred Ch--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
.. ...++.+|||||++.+++.+|++|++.+.+.++. ...++.++.++++++.++|.+..++.+ ..|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998776653 223344566889999999998888874 4799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|||+++ ++...||++++|.+ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999975 57778999999975 89999887
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 2154 ~q 2155 (2272)
T TIGR01257 2154 IQ 2155 (2272)
T ss_pred HH
Confidence 53
No 13
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.8e-69 Score=712.97 Aligned_cols=212 Identities=24% Similarity=0.309 Sum_probs=178.4
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|+|+|+++.|+. +...+|+||||+|+|||++||||+||||||||+++|+|..+ +.+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 46999999987742 12359999999999999999999999999999999999876 458999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+.. ..+|+.++|+||++.++.. |++|||.++. . ..++.++++++..++.+.. |..++.
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge- 1370 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------E----HNDADLWESLERAHLKDVIRRNSLGLDAEVSE- 1370 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------C----CCHHHHHHHHHHcCcHHHHHhCccccCccccC-
Confidence 754 5678899999999999876 9999996531 1 1345578888888876543 333443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|++ +....||++++|++
T Consensus 1371 ~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL--~tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRL--NTIIDCDRILVLDA 1447 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCCh--HHHHhCCEEEEEEC
Confidence 235799999999999999999999999999999999999999999999986 489999999996 46778999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|+|++.|+..
T Consensus 1448 -G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 -GRVVEFDTPE 1457 (1622)
T ss_pred -CEEEEeCCHH
Confidence 8999999754
No 14
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.6e-68 Score=707.76 Aligned_cols=212 Identities=23% Similarity=0.304 Sum_probs=178.2
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|+|+|+++.++. +.+.+|+||||+|+|||++||+|+||||||||+++|+|..+ +.+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 46899999987741 12359999999999999999999999999999999999876 458999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+.+ ..+|+.++|+||++.+++. |++|||.+.. + ..++.++++++..++.+.. |..++.
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e- 1367 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------E----HNDADLWEALERAHIKDVIDRNPFGLDAEVSE- 1367 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------C----CCHHHHHHHHHHcCCHHHHHhCcCCCCceecC-
Confidence 643 5678899999999999876 9999996431 1 2244578889988886543 333443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..+||||||||+||||||+++|+||+||||||+||+++++.|++.|++.. +++|||+|+|++ +....||++++|++
T Consensus 1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRL--NTIIDCDKILVLSS 1444 (1495)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCH--HHHHhCCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999975 489999999996 56778999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 1445 -G~ivE~Gt~~ 1454 (1495)
T PLN03232 1445 -GQVLEYDSPQ 1454 (1495)
T ss_pred -CEEEEECCHH
Confidence 8999999854
No 15
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.4e-67 Score=603.21 Aligned_cols=491 Identities=27% Similarity=0.348 Sum_probs=363.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-CCcceEEEECCccCCCCcc-------cceEEEeccCC-
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 254 (1119)
..+++||||++.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.+|||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999886 4568999999987644332 26799999996
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc
Q 001228 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1119)
Q Consensus 255 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 333 (1119)
.+.|-+||.+.+.-..+.++...+ .+....+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~---------------------------------~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSR---------------------------------AEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccH---------------------------------HHHHHHHHHHHHHcCCCChhhh
Confidence 567779999998765544332110 1122345678999999987655
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
+.+.+.|||||||||.||+||+.+|++|++|||||+||+.++.+|++.|+++.++.|.+++++.|. ..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD-l~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD-LGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC-HHHHHHhcCe
Confidence 445677999999999999999999999999999999999999999999999998887777766655 4578899999
Q ss_pred EEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhH
Q 001228 414 IILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQI 493 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 493 (1119)
|+||++|++++.|+.+++.+- |. .||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p~-------------------------hpYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------PQ-------------------------HPYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------cC-------------------------CcccH-----------------HH
Confidence 999999999999999998641 11 01100 00
Q ss_pred HhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc
Q 001228 494 ASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573 (1119)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~ 573 (1119)
.+. .|.. .....
T Consensus 255 l~a--~p~~-----------------------------------------------------------------~~~~~- 266 (539)
T COG1123 255 LAA--VPRL-----------------------------------------------------------------GDEKI- 266 (539)
T ss_pred Hhh--CCCc-----------------------------------------------------------------ccccc-
Confidence 000 0000 00000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHH
Q 001228 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAAS 653 (1119)
Q Consensus 574 ~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 653 (1119)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHH
Q 001228 654 RFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVN 733 (1119)
Q Consensus 654 ~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~n 733 (1119)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchh
Q 001228 734 EFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEK 813 (1119)
Q Consensus 734 ef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 813 (1119)
.+. ....+
T Consensus 267 -----~~~-~~~~~------------------------------------------------------------------ 274 (539)
T COG1123 267 -----IRL-PRRGP------------------------------------------------------------------ 274 (539)
T ss_pred -----ccc-ccccc------------------------------------------------------------------
Confidence 000 00000
Q ss_pred hhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCC
Q 001228 814 QRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPG 893 (1119)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~G 893 (1119)
.+ ...-++.+|++-++..+...- ....+...+++||||++++|
T Consensus 275 ----------------------------------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~G 317 (539)
T COG1123 275 ----------------------------------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREG 317 (539)
T ss_pred ----------------------------------cc-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCC
Confidence 00 000123333332222111000 00012346999999999999
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC--C---hhhhcceEEEEccCCC--CCCCCCHHHHHHHHHH
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK--N---QETFARVSGYCEQNDI--HSPYVTVYESLLYSAW 966 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~--~---~~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~ 966 (1119)
|++||||+||||||||.++|+|+.++ ..|.|.++|.+. . ....++.+-+++|+|. +.|.+||++.+.....
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 99999999999999999999998874 589999999762 1 1234567788888875 7799999999987655
Q ss_pred hhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q 001228 967 LRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045 (1119)
Q Consensus 967 l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i 1045 (1119)
+... ....+.++.+.++++.++|.. +.+++ +.+||||||||+||||||+.+|++|++|||||.||+..++.|
T Consensus 396 ~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~V 468 (539)
T COG1123 396 IHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQV 468 (539)
T ss_pred hhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHH
Confidence 4432 224566678999999999986 56666 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC----ChHHHHHHhhhhcCC
Q 001228 1046 MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH----ESHKLIEYFEVSIPF 1109 (1119)
Q Consensus 1046 ~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~----~~~~l~~~f~~~i~g 1109 (1119)
.++|+++.++ |.|.|+||||++ -+...||++++|.+ |++++.||... ..+.-.+.+..++|.
T Consensus 469 lnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~~~v~~~p~h~Ytr~L~~avp~ 535 (539)
T COG1123 469 LNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPTEKVFENPQHPYTRKLLAAVPK 535 (539)
T ss_pred HHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCHHHHhcCCCChHHHHHHHhccc
Confidence 9999999865 999999999986 47778999999975 89999997432 223344444435554
No 16
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.7e-66 Score=680.78 Aligned_cols=217 Identities=19% Similarity=0.309 Sum_probs=177.8
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC------------
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 920 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g------------ 920 (1119)
..|+|+||+|.|+.. ++..+|+|+||+|+||+++||+|+||||||||+++|.|...+.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 368999999987521 1235999999999999999999999999999999999976531
Q ss_pred ----------------------------------------eeEEEEEECCccCC---hhhhcceEEEEccCCCCCCCCCH
Q 001228 921 ----------------------------------------YIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 921 ----------------------------------------~~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+.+|+|.+||.++. ...+++.+|||+|++.+|+ .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 14899999999864 3567889999999999875 699
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+||+.|+. .+.. ++.++++++..++.++ .|..+|.. ...||||||||++|||||+++|+||||
T Consensus 1313 reNI~~g~-----~~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999862 1222 2346777777776553 35556643 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecC---cE-EEEecCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRG---GR-VIYAGPL 1092 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g---G~-v~~~g~~ 1092 (1119)
|||||+||+++.+.|++.|.++. .+++|+|+|+|++ .....||++++|+++ |+ +++.|+.
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 3589999999996 467889999999872 66 5578874
No 17
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.7e-66 Score=688.45 Aligned_cols=212 Identities=21% Similarity=0.242 Sum_probs=178.5
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|+++.++.. ...+|+||||+|+|||++||||+||||||||+++|+|..+ +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 469999999877521 1259999999999999999999999999999999999876 458999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+.. ..+|+.++|+||++.+++. |++|||.... + ..++.++++++.+++.+.. |..++.
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e- 1417 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------Q----YSDEEVWWALELAHLKTFVSALPDKLDHECAE- 1417 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------C----CCHHHHHHHHHHcCcHHHHhhCccCCCceecC-
Confidence 754 5678899999999999986 9999995211 1 2244578899998886543 334443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|++ +....+|++++|++
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl--~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRL--NTIMDYTRVIVLDK 1494 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH--HHHHhCCEEEEEEC
Confidence 335799999999999999999999999999999999999999999999875 489999999996 57788999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|+|++.|+..
T Consensus 1495 -G~IvE~G~~~ 1504 (1522)
T TIGR00957 1495 -GEVAEFGAPS 1504 (1522)
T ss_pred -CEEEEECCHH
Confidence 8999999864
No 18
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-66 Score=623.45 Aligned_cols=469 Identities=23% Similarity=0.324 Sum_probs=350.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 46999999999999999999999999999999999998861 138999999998754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|.......+. .+ .. +....++++++.+||++..++.+++
T Consensus 97 ~tv~e~l~~~~~~~~~~~-~~------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-MD------YD------------------------AMYLRAQKLLAQLKLDINPATPVGN-- 143 (506)
T ss_pred CcHHHHhhhcccccccCC-cC------HH------------------------HHHHHHHHHHHHcCCCCCcccchhh--
Confidence 999999988643210000 00 00 0012356789999999888888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||+|++|++
T Consensus 144 ---LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 144 ---LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVIRD 218 (506)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999999999999999975 477877776654 578889999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|++++.|+.+++.. .+. .+
T Consensus 219 G~i~~~~~~~~~~~---------------~~~-----------------------------~~----------------- 237 (506)
T PRK13549 219 GRHIGTRPAAGMTE---------------DDI-----------------------------IT----------------- 237 (506)
T ss_pred CEEeeecccccCCH---------------HHH-----------------------------HH-----------------
Confidence 99998876443200 000 00
Q ss_pred CCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHH
Q 001228 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1119)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~ 579 (1119)
. ++... .
T Consensus 238 -------------------------------~----------------------------~~~~~-----~--------- 244 (506)
T PRK13549 238 -------------------------------M----------------------------MVGRE-----L--------- 244 (506)
T ss_pred -------------------------------H----------------------------hhCcC-----c---------
Confidence 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHH
Q 001228 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1119)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 659 (1119)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCc
Q 001228 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1119)
Q Consensus 660 l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1119)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhcccc
Q 001228 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1119)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1119)
. . . . +
T Consensus 245 ------~----~------~-------------------------------------~-~--------------------- 249 (506)
T PRK13549 245 ------T----A------L-------------------------------------Y-P--------------------- 249 (506)
T ss_pred ------c----c------c-------------------------------------c-c---------------------
Confidence 0 0 0 0 0
Q ss_pred cccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEE
Q 001228 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1119)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~ 899 (1119)
. ... . + ....++++|+++.++. .++..+|+||||+|++||++||+
T Consensus 250 -------~-~~~----------~------~-~~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~ 294 (506)
T PRK13549 250 -------R-EPH----------T------I-GEVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIA 294 (506)
T ss_pred -------c-ccc----------C------C-CCceEEEecCcccccc----------ccccccccceeeEEcCCcEEEEe
Confidence 0 000 0 0 0012456666543210 01235899999999999999999
Q ss_pred cCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCC---CCCCCCCHHHHHHHHHHhhcC--
Q 001228 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAWLRLS-- 970 (1119)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~l~~~-- 970 (1119)
|+||||||||+++|+|...+ +.+|+|.++|.++.. ...++.++|++|++ .+++.+||.||+.+.......
T Consensus 295 G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 373 (506)
T PRK13549 295 GLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGG 373 (506)
T ss_pred CCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccC
Confidence 99999999999999998641 147999999976532 12345699999996 467889999999875321111
Q ss_pred CCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 001228 971 SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049 (1119)
Q Consensus 971 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l 1049 (1119)
.........+.+.++++.+++. +..++.+ ..|||||||||+|||||+.+|+||||||||+|||+.+++.++++|
T Consensus 374 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 448 (506)
T PRK13549 374 SRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLI 448 (506)
T ss_pred cccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH
Confidence 0012233345688999999996 4666653 479999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCC-hHHHHHHh
Q 001228 1050 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE-SHKLIEYF 1103 (1119)
Q Consensus 1050 ~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~-~~~l~~~f 1103 (1119)
++++++|+|||++||+++ ++.+.||++++|.+ |+++..|+..+. .+++.+.+
T Consensus 449 ~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~~~~~~~~ 501 (506)
T PRK13549 449 NQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHNLTQEQVMEAA 501 (506)
T ss_pred HHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccccCCHHHHHHHH
Confidence 999888999999999975 56778999999975 789888876553 33344443
No 19
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-65 Score=623.15 Aligned_cols=458 Identities=22% Similarity=0.295 Sum_probs=345.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 46999999999999999999999999999999999999886 9999999998765332 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.++...... .+.. ... +. .+....++.+++.+||++..++.+++
T Consensus 95 ~tv~e~l~~~~~~~~~--~~~~-~~~-----------~~-------------~~~~~~~~~~l~~~gl~~~~~~~~~~-- 145 (510)
T PRK09700 95 LTVLENLYIGRHLTKK--VCGV-NII-----------DW-------------REMRVRAAMMLLRVGLKVDLDEKVAN-- 145 (510)
T ss_pred CcHHHHhhhccccccc--cccc-ccc-----------CH-------------HHHHHHHHHHHHHcCCCCCcccchhh--
Confidence 9999999875321000 0000 000 00 00112356789999999888998887
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++. +.|+|++.|+ ..++.++||++++|++
T Consensus 146 ---LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd-~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 146 ---LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHK-LAEIRRICDRYTVMKD 220 (510)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999764 7787777665 4578899999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|++++.|+++++.. .+.. +..
T Consensus 221 G~i~~~g~~~~~~~---------------~~~~-----------------------------~~~--------------- 241 (510)
T PRK09700 221 GSSVCSGMVSDVSN---------------DDIV-----------------------------RLM--------------- 241 (510)
T ss_pred CEEeeecchhhCCH---------------HHHH-----------------------------HHh---------------
Confidence 99999887654310 0000 000
Q ss_pred CCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHH
Q 001228 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1119)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~ 579 (1119)
+... ..
T Consensus 242 -------------------------------------------------------------~~~~-----~~-------- 247 (510)
T PRK09700 242 -------------------------------------------------------------VGRE-----LQ-------- 247 (510)
T ss_pred -------------------------------------------------------------cCCC-----cc--------
Confidence 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHH
Q 001228 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1119)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 659 (1119)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCc
Q 001228 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1119)
Q Consensus 660 l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1119)
..+
T Consensus 248 -------------------------------------------------------------------------~~~---- 250 (510)
T PRK09700 248 -------------------------------------------------------------------------NRF---- 250 (510)
T ss_pred -------------------------------------------------------------------------ccc----
Confidence 000
Q ss_pred cccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhcccc
Q 001228 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1119)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1119)
.. .
T Consensus 251 -----~~----~-------------------------------------------------------------------- 253 (510)
T PRK09700 251 -----NA----M-------------------------------------------------------------------- 253 (510)
T ss_pred -----cc----c--------------------------------------------------------------------
Confidence 00 0
Q ss_pred cccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEE
Q 001228 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1119)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~ 899 (1119)
.+.. .. . . .+..++++|++... + .+|+||||+|++||+++|+
T Consensus 254 --------~~~~---~~-----~------~-~~~~l~~~~l~~~~-------------~--~~l~~isl~i~~Ge~~~l~ 295 (510)
T PRK09700 254 --------KENV---SN-----L------A-HETVFEVRNVTSRD-------------R--KKVRDISFSVCRGEILGFA 295 (510)
T ss_pred --------cccc---cc-----C------C-CCcEEEEeCccccC-------------C--CcccceeEEEcCCcEEEEE
Confidence 0000 00 0 0 00125666665321 1 2899999999999999999
Q ss_pred cCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCC---CCCCCCCHHHHHHHHHHhh---c
Q 001228 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAWLR---L 969 (1119)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~l~---~ 969 (1119)
||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++ .+++.+||.||+.+....+ .
T Consensus 296 G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 373 (510)
T PRK09700 296 GLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGY 373 (510)
T ss_pred CCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccc
Confidence 9999999999999999865 357999999976532 12345799999983 5778899999998753211 0
Q ss_pred C--CC-ccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q 001228 970 S--SD-VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045 (1119)
Q Consensus 970 ~--~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i 1045 (1119)
. .. .......+.+.++++.+++. +..++.+ ..|||||||||+|||+|+.+|+||||||||+|||+.+++.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 448 (510)
T PRK09700 374 KGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI 448 (510)
T ss_pred cccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHH
Confidence 0 00 01222335578999999996 6666663 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1046 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1046 ~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+++|++++++|.|||++|||++ .+...||++++|.+ |+++..++.
T Consensus 449 ~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 449 YKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 9999999878999999999975 57788999999975 788887765
No 20
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.7e-64 Score=671.44 Aligned_cols=212 Identities=24% Similarity=0.272 Sum_probs=178.2
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|.|+|+++.|+. +...+|+||||+|+|||++||+|+||||||||+++|+|..+ +.+|+|.|||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46999999987742 12359999999999999999999999999999999999876 458999999998
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.++|+||++.++.. |++|||.... + ..++.++++++.+++.+.. |..++.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~----~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge- 1441 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------E----ASSAEVWAALELVGLRERVASESEGIDSRVLE- 1441 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------C----CCHHHHHHHHHHCCChHHHhhCcccccccccC-
Confidence 75 35678899999999999876 9999994311 1 1245688999999887643 334444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1003 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~-p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..+||||||||+||||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+|+|++ +....||+|++|+
T Consensus 1442 ~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMD 1518 (1560)
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 3357999999999999999996 89999999999999999999999999875 479999999996 5778899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |+|++.|+..
T Consensus 1519 ~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1519 H-GAVAEMGSPR 1529 (1560)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999853
No 21
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.3e-65 Score=618.96 Aligned_cols=451 Identities=22% Similarity=0.337 Sum_probs=345.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|++|.+|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999887 999999998875322 13569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|+.......... ... +....++++++.+||++..|..+++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRI------DWK------------------------KMYAEADKLLARLNLRFSSDKLVGE-- 141 (501)
T ss_pred CcHHHHhhhccccccccCcc------CHH------------------------HHHHHHHHHHHHcCCCCCccCchhh--
Confidence 99999998864321000000 000 0012346789999999888888887
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++ .+.|+|++.|++ .++.++||+|++|++
T Consensus 142 ---LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 142 ---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRD 216 (501)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999875 377877776655 578899999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|+++..|+.+++.. .+ ..+.+
T Consensus 217 G~i~~~~~~~~~~~---------------~~-----------------------------~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE---------------DS-----------------------------LIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH---------------HH-----------------------------HHHHh---------------
Confidence 99998776443200 00 00000
Q ss_pred CCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHH
Q 001228 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1119)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~ 579 (1119)
+.
T Consensus 238 -------------------------------------------------------------~~----------------- 239 (501)
T PRK10762 238 -------------------------------------------------------------VG----------------- 239 (501)
T ss_pred -------------------------------------------------------------cC-----------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHH
Q 001228 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1119)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 659 (1119)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK10762 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCc
Q 001228 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1119)
Q Consensus 660 l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1119)
.+
T Consensus 240 ------------------------------------------------------------------------------~~ 241 (501)
T PRK10762 240 ------------------------------------------------------------------------------RK 241 (501)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhcccc
Q 001228 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1119)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1119)
.. ...+
T Consensus 242 ~~--~~~~------------------------------------------------------------------------ 247 (501)
T PRK10762 242 LE--DQYP------------------------------------------------------------------------ 247 (501)
T ss_pred cc--cccc------------------------------------------------------------------------
Confidence 00 0000
Q ss_pred cccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEE
Q 001228 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1119)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~ 899 (1119)
..+ . + + .+..++++|++. .+|+|+||+|++||++||+
T Consensus 248 -------~~~-----~------~------~-~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~li 284 (501)
T PRK10762 248 -------RLD-----K------A------P-GEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVS 284 (501)
T ss_pred -------ccc-----c------C------C-CCcEEEEeCccc------------------CCcccceEEEcCCcEEEEe
Confidence 000 0 0 0 001245566541 2699999999999999999
Q ss_pred cCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCC---CCCCCCCHHHHHHHHHHhhc-C-
Q 001228 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAWLRL-S- 970 (1119)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~l~~-~- 970 (1119)
||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++ .+++.+||.|++.+...... .
T Consensus 285 G~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 362 (501)
T PRK10762 285 GLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRA 362 (501)
T ss_pred cCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccc
Confidence 9999999999999999865 357999999977532 12345699999996 46788999999987532110 0
Q ss_pred -CCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q 001228 971 -SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048 (1119)
Q Consensus 971 -~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~ 1048 (1119)
.........+.+.++++.+++. +..++.+ ..|||||||||+|||||+.+|+||||||||+|||+.+++.+.+.
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 437 (501)
T PRK10762 363 GGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQL 437 (501)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHH
Confidence 0012223345688999999995 5666663 47999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCC
Q 001228 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE 1095 (1119)
Q Consensus 1049 l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~ 1095 (1119)
|++++++|.|||++||+++ .+...||++++|++ |++++.|+....
T Consensus 438 l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 482 (501)
T PRK10762 438 INQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQA 482 (501)
T ss_pred HHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccccC
Confidence 9999878999999999975 57778999999975 789988876543
No 22
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-65 Score=626.84 Aligned_cols=488 Identities=21% Similarity=0.232 Sum_probs=350.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC----------CCc------c-cce
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN----------EFV------P-QRT 246 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~----------~~~------~-~~~ 246 (1119)
.++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|..++ ... . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999886 899999986431 100 1 246
Q ss_pred EEEeccCC--CCCCCCCHHHHHHHhhhhc-CCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHH
Q 001228 247 CAYISQHD--LHHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (1119)
Q Consensus 247 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (1119)
+|||+|++ .+++.+||+||+.|..+.. +.. +. +....++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------RE------------------------EAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHH
Confidence 99999997 6788899999999875431 110 00 01123567899
Q ss_pred HcCCcc---cccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 001228 324 ILGLDI---CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (1119)
Q Consensus 324 ~lgL~~---~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~ 400 (1119)
.+||++ ..+..+.+ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++..+.|+|++.
T Consensus 152 ~~gL~~~~~~~~~~~~~-----LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 152 QVRIPEAQTILSRYPHQ-----LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred HCCCCChhhHHhCCCcc-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 999964 46777776 9999999999999999999999999999999999999999999999876577877665
Q ss_pred ecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHH
Q 001228 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDF 480 (1119)
Q Consensus 401 ~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 480 (1119)
|. ..++.++||+|++|++|++++.|+++++.. .|.+....+++..+
T Consensus 227 Hd-l~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~~~~------------------------- 272 (623)
T PRK10261 227 HD-MGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALLAAV------------------------- 272 (623)
T ss_pred CC-HHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhhhcc-------------------------
Confidence 54 567889999999999999999998876521 01000000000000
Q ss_pred HHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Q 001228 481 VEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVY 560 (1119)
Q Consensus 481 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf 560 (1119)
+
T Consensus 273 -------------------~------------------------------------------------------------ 273 (623)
T PRK10261 273 -------------------P------------------------------------------------------------ 273 (623)
T ss_pred -------------------C------------------------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHh
Q 001228 561 FRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVA 640 (1119)
Q Consensus 561 ~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~ 640 (1119)
+.. ...+.
T Consensus 274 -~~~----~~~~~------------------------------------------------------------------- 281 (623)
T PRK10261 274 -QLG----AMKGL------------------------------------------------------------------- 281 (623)
T ss_pred -ccc----ccccc-------------------------------------------------------------------
Confidence 000 00000
Q ss_pred hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhH
Q 001228 641 LTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYI 720 (1119)
Q Consensus 641 i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~i 720 (1119)
. .+
T Consensus 282 --------~-------------------------------------------------------~~-------------- 284 (623)
T PRK10261 282 --------D-------------------------------------------------------YP-------------- 284 (623)
T ss_pred --------c-------------------------------------------------------CC--------------
Confidence 0 00
Q ss_pred cHHHHHHHHHHHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001228 721 SPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIG 800 (1119)
Q Consensus 721 sp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~ 800 (1119)
.......... +. .
T Consensus 285 -----------------~~~~~~~~~~--~~--~---------------------------------------------- 297 (623)
T PRK10261 285 -----------------RRFPLISLEH--PA--K---------------------------------------------- 297 (623)
T ss_pred -----------------cccccccccc--cc--c----------------------------------------------
Confidence 0000000000 00 0
Q ss_pred CCCcceeeccchhhhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccc
Q 001228 801 DSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRL 880 (1119)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~ 880 (1119)
.. . . .. .. . . +.....++++|+++.++..... ........
T Consensus 298 ------------~~-~----~-----~~------~~--~--~------~~~~~~L~~~~l~~~y~~~~~~--~~~~~~~~ 337 (623)
T PRK10261 298 ------------QE-P----P-----IE------QD--T--V------VDGEPILQVRNLVTRFPLRSGL--LNRVTREV 337 (623)
T ss_pred ------------cC-c----c-----cc------cc--c--c------cCCCceEEEeeeEEEEcCCCcc--ccccCCce
Confidence 00 0 0 00 00 0 0 0001136777777655311000 00000124
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCC--CCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQND--IHS 952 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~--~~~ 952 (1119)
.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++ .++
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLD 415 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcC
Confidence 69999999999999999999999999999999999875 458999999986532 12356799999997 478
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+.+||.|++.+....+. ........+.+.++++.++|. ...++. +.+|||||||||+|||||+.+|+|||||
T Consensus 416 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llllD 488 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIAD 488 (623)
T ss_pred CCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 89999999987643321 112233456788999999995 455665 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+|||+.++..|+++|++++++ |.|||++|||++ .+...||++++|.+ |++++.|+..
T Consensus 489 EPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~ 549 (623)
T PRK10261 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRR 549 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999999765 899999999975 56778999999975 7999988754
No 23
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.8e-64 Score=666.33 Aligned_cols=211 Identities=22% Similarity=0.274 Sum_probs=177.7
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|+|+|+++.++. +.+.+|+||||+|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999987752 12469999999999999999999999999999999999864 47999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+.. ..+++.++|+||+|.+++. |++|||.... ...++.++++++.++|.+.. |..++.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~----------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE----------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc----------CCCHHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 753 5578899999999999986 9999994321 12345688999999886543 333443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|++ +....||++++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl--~ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRV--EALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH--HHHHhCCEEEEEEC
Confidence 335799999999999999999999999999999999999999999999976 479999999996 56778999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|+|++.|+..
T Consensus 1427 -G~ivE~g~p~ 1436 (1490)
T TIGR01271 1427 -SSVKQYDSIQ 1436 (1490)
T ss_pred -CEEEEeCCHH
Confidence 8999988753
No 24
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.1e-65 Score=615.03 Aligned_cols=454 Identities=21% Similarity=0.282 Sum_probs=343.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 45999999999999999999999999999999999999887 9999999988754322 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|.... .+ + ....++.+++.+||++..++.+++
T Consensus 101 ~tv~e~l~~~~~~------~~--------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (510)
T PRK15439 101 LSVKENILFGLPK------RQ--------A------------------------SMQKMKQLLAALGCQLDLDSSAGS-- 140 (510)
T ss_pred CcHHHHhhccccc------ch--------H------------------------HHHHHHHHHHHcCCCccccCChhh--
Confidence 9999999874210 00 0 011345688999999888888887
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++. +.|+|++.|++ .++.++||+|++|++
T Consensus 141 ---LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~-~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKL-PEIRQLADRISVMRD 215 (510)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998764 77877776654 578899999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|++++.|+++++... +.+ +.+.. .
T Consensus 216 G~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~~------------~ 239 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------DII-----------------------------QAITP------------A 239 (510)
T ss_pred CEEEEecChHHcCHH---------------HHH-----------------------------HHHhC------------c
Confidence 999999987654210 000 00000 0
Q ss_pred CCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHH
Q 001228 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1119)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~ 579 (1119)
. .. ......
T Consensus 240 ----~-~~------------------------------------------------------------~~~~~~------ 248 (510)
T PRK15439 240 ----A-RE------------------------------------------------------------KSLSAS------ 248 (510)
T ss_pred ----c-cc------------------------------------------------------------cccccc------
Confidence 0 00 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHH
Q 001228 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1119)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 659 (1119)
.
T Consensus 249 ----------------------------------~--------------------------------------------- 249 (510)
T PRK15439 249 ----------------------------------Q--------------------------------------------- 249 (510)
T ss_pred ----------------------------------c---------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCc
Q 001228 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1119)
Q Consensus 660 l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1119)
.
T Consensus 250 -------------------------------------------------------------------------------~ 250 (510)
T PRK15439 250 -------------------------------------------------------------------------------K 250 (510)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred cccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhcccc
Q 001228 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1119)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1119)
.. . .+.
T Consensus 251 ~~----~----------------~~~------------------------------------------------------ 256 (510)
T PRK15439 251 LW----L----------------ELP------------------------------------------------------ 256 (510)
T ss_pred cc----c----------------ccc------------------------------------------------------
Confidence 00 0 000
Q ss_pred cccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEE
Q 001228 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1119)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~ 899 (1119)
..+. . . +..+..+.++|++. .+|+||||+|++||++||+
T Consensus 257 -------~~~~-------~---~------~~~~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~ 295 (510)
T PRK15439 257 -------GNRR-------Q---Q------AAGAPVLTVEDLTG------------------EGFRNISLEVRAGEILGLA 295 (510)
T ss_pred -------cccc-------c---c------CCCCceEEEeCCCC------------------CCccceeEEEcCCcEEEEE
Confidence 0000 0 0 00011245666541 1599999999999999999
Q ss_pred cCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEEccCC---CCCCCCCHHHHHHHHHHhhcCCC
Q 001228 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQND---IHSPYVTVYESLLYSAWLRLSSD 972 (1119)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~l~~~~~ 972 (1119)
|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++......+....
T Consensus 296 G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~ 373 (510)
T PRK15439 296 GVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFW 373 (510)
T ss_pred CCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccc
Confidence 9999999999999999865 3579999999865321 1245699999985 47788999999864311110000
Q ss_pred ccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 973 VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051 (1119)
Q Consensus 973 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 1051 (1119)
......++.++++++.+++. +..++.+ ..|||||||||+|||||+.+|+||||||||+|||+.+++.+++.|++
T Consensus 374 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~ 448 (510)
T PRK15439 374 IKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS 448 (510)
T ss_pred cChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHH
Confidence 01122335678999999996 5666663 57999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1052 ~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
++++|.|||++|||++ .+...||++++|.+ |++++.|....
T Consensus 449 l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 449 IAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred HHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 9888999999999986 57778999999974 78998887654
No 25
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.3e-64 Score=616.48 Aligned_cols=463 Identities=22% Similarity=0.303 Sum_probs=344.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCCcc-------cceEEEeccCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 254 (1119)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999862 1138999999998754321 24699999997
Q ss_pred C--CCCCCCHHHHHHHhhhhc-CCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc--
Q 001228 255 L--HHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-- 329 (1119)
Q Consensus 255 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 329 (1119)
. +++.+||+|++.+..... +.. .. +....++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------RE------------------------AARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHCCCCChH
Confidence 4 667789999987643211 100 00 01123567899999975
Q ss_pred -cccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHH
Q 001228 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (1119)
Q Consensus 330 -~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 408 (1119)
..++.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.
T Consensus 148 ~~~~~~~~~-----LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~ 221 (529)
T PRK15134 148 KRLTDYPHQ-----LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVR 221 (529)
T ss_pred HHHhhCCcc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHH
Confidence 35777877 9999999999999999999999999999999999999999999999765578888777665 4778
Q ss_pred hhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhch
Q 001228 409 DLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFH 488 (1119)
Q Consensus 409 ~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 488 (1119)
++||+|++|++|++++.|+++++... |.. .+ .
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~----~~-----------------------------~------- 253 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH----PY-----------------------------T------- 253 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC----HH-----------------------------H-------
Confidence 89999999999999999987654210 000 00 0
Q ss_pred hhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 001228 489 MGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVG 568 (1119)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~ 568 (1119)
+.+ +...
T Consensus 254 -----------------------------------------~~~----------------------------~~~~---- 260 (529)
T PRK15134 254 -----------------------------------------QKL----------------------------LNSE---- 260 (529)
T ss_pred -----------------------------------------HHH----------------------------HHhC----
Confidence 000 0000
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCC
Q 001228 569 DMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGY 648 (1119)
Q Consensus 569 ~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~ 648 (1119)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHH
Q 001228 649 DPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQT 728 (1119)
Q Consensus 649 ~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~ 728 (1119)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceee
Q 001228 729 SLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIE 808 (1119)
Q Consensus 729 al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~ 808 (1119)
....+ .
T Consensus 261 --------------~~~~~---~--------------------------------------------------------- 266 (529)
T PRK15134 261 --------------PSGDP---V--------------------------------------------------------- 266 (529)
T ss_pred --------------ccccc---c---------------------------------------------------------
Confidence 00000 0
Q ss_pred ccchhhhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeecccc-ccccccccccceeeccce
Q 001228 809 EDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAE-MKTEGVGEDRLQLLHSVS 887 (1119)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~-~~~~~~~~~~~~vL~~vs 887 (1119)
.. .. + .+..++++|+++.++...+ .+ ...+.+.+|+|||
T Consensus 267 ------------------~~-------------~~-----~-~~~~l~~~~l~~~~~~~~~~~~---~~~~~~~il~~is 306 (529)
T PRK15134 267 ------------------PL-------------PE-----P-ASPLLDVEQLQVAFPIRKGILK---RTVDHNVVVKNIS 306 (529)
T ss_pred ------------------cc-------------CC-----C-CCCcccccCcEEEeecCccccc---cccccceeeecce
Confidence 00 00 0 0001344555443321000 00 0001246999999
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---h---hhcceEEEEccCC--CCCCCCCHHH
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---TFARVSGYCEQND--IHSPYVTVYE 959 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~~~~~~gy~~q~~--~~~~~~tv~e 959 (1119)
|+|++||++||+|+||||||||+++|+|... .+|+|.++|.++.. . .+++.+||++|++ .+++.+||.|
T Consensus 307 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e 383 (529)
T PRK15134 307 FTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ 383 (529)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHH
Confidence 9999999999999999999999999999863 47999999976532 1 1345699999997 3678899999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
|+.+....+.. .......++.+.++++.+++. +..++. +.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 384 ~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 384 IIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred HHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 99886433211 112233445688999999996 455665 45799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1039 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+.++..+++.|++++++ |+|||++||+++ .+...||++++|.+ |++++.|+.
T Consensus 458 ~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 458 KTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 99999999999999865 899999999975 46678999999975 789888874
No 26
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.7e-64 Score=614.48 Aligned_cols=445 Identities=23% Similarity=0.318 Sum_probs=339.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECC-----------------------ccC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCG-----------------------HEL 238 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~G~I~~~G-----------------------~~~ 238 (1119)
+.+|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999996 565 89999972 211
Q ss_pred C-------CC------cccceEEEeccC-CCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHH
Q 001228 239 N-------EF------VPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304 (1119)
Q Consensus 239 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1119)
. .. ..++.++|++|+ +.+++.+||+||+.|.....+.. ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~~---------------- 143 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------GK---------------- 143 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------HH----------------
Confidence 0 00 113569999997 67888899999998864322110 00
Q ss_pred HHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH
Q 001228 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF 384 (1119)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~ 384 (1119)
+....++.+++.+||++..+..+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.
T Consensus 144 --------~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 144 --------EAVGRAVDLIEMVQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred --------HHHHHHHHHHHHcCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 0112356789999999888888877 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhh
Q 001228 385 LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQY 464 (1119)
Q Consensus 385 l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~ 464 (1119)
|+++++..+.|+|++.|++ ..+.++||+|++|++|++++.|+++++.+.+..
T Consensus 211 l~~l~~~~g~tviivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~--------------------------- 262 (520)
T TIGR03269 211 LEEAVKASGISMVLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--------------------------- 262 (520)
T ss_pred HHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHh---------------------------
Confidence 9999765577887777665 467789999999999999988876543210000
Q ss_pred hhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHH
Q 001228 465 WFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIF 544 (1119)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~ 544 (1119)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHH
Q 001228 545 KTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIW 624 (1119)
Q Consensus 545 ~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~ 624 (1119)
...
T Consensus 263 ------------------------~~~----------------------------------------------------- 265 (520)
T TIGR03269 263 ------------------------GVS----------------------------------------------------- 265 (520)
T ss_pred ------------------------hch-----------------------------------------------------
Confidence 000
Q ss_pred HHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcc
Q 001228 625 LLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFV 704 (1119)
Q Consensus 625 i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~ 704 (1119)
.
T Consensus 266 --------------------------~----------------------------------------------------- 266 (520)
T TIGR03269 266 --------------------------E----------------------------------------------------- 266 (520)
T ss_pred --------------------------h-----------------------------------------------------
Confidence 0
Q ss_pred ccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHH
Q 001228 705 MAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFL 784 (1119)
Q Consensus 705 i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~ 784 (1119)
+ . .
T Consensus 267 -----~-----------------------------------~----~--------------------------------- 269 (520)
T TIGR03269 267 -----V-----------------------------------E----K--------------------------------- 269 (520)
T ss_pred -----h-----------------------------------c----c---------------------------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHhcCCCCCCCcceeeccchhhhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceee
Q 001228 785 FNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFV 864 (1119)
Q Consensus 785 f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v 864 (1119)
. . .. + .....++++|+++.+
T Consensus 270 -------------~-----------------~----------~~-------------~-------~~~~~l~~~~l~~~~ 289 (520)
T TIGR03269 270 -------------E-----------------C----------EV-------------E-------VGEPIIKVRNVSKRY 289 (520)
T ss_pred -------------c-----------------c----------cc-------------C-------CCCceEEEeccEEEe
Confidence 0 0 00 0 000124566666544
Q ss_pred eccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEEC-Ccc---CCh-----
Q 001228 865 DMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS-GYP---KNQ----- 935 (1119)
Q Consensus 865 ~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~-g~~---~~~----- 935 (1119)
+.. ..+++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++ |.+ ...
T Consensus 290 ~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~ 359 (520)
T TIGR03269 290 ISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDG 359 (520)
T ss_pred ccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhh
Confidence 210 0012459999999999999999999999999999999999865 358999996 532 111
Q ss_pred -hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-----ccccccCCCCCCCCCH
Q 001228 936 -ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-----LNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 936 -~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~~~~~LS~ 1009 (1119)
...++.+||++|++.+++.+||.|++.+...+. .......+.+.++++.++|.+ ..++. +..|||
T Consensus 360 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSg 430 (520)
T TIGR03269 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSE 430 (520)
T ss_pred HHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCH
Confidence 123456999999998889999999998753221 122223456788999999965 34554 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
||||||+|||||+.+|+||||||||+|||+.+++.+++.|++++++ |.|||++||+++ .+...||++++|.+ |++++
T Consensus 431 Gq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~ 508 (520)
T TIGR03269 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVK 508 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999975 56778999999975 78888
Q ss_pred ecCC
Q 001228 1089 AGPL 1092 (1119)
Q Consensus 1089 ~g~~ 1092 (1119)
.|+.
T Consensus 509 ~g~~ 512 (520)
T TIGR03269 509 IGDP 512 (520)
T ss_pred ECCH
Confidence 8763
No 27
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.3e-64 Score=609.43 Aligned_cols=460 Identities=22% Similarity=0.293 Sum_probs=342.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 46999999999999999999999999999999999998761 128999999998764321 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccc-cccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-DTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg~~ 338 (1119)
+||+||+.|.......+.... . . +....++.+++.+||.+.. ++.+++
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~- 141 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMA------Y----------N--------------AMYLRAKNLLRELQLDADNVTRPVGD- 141 (500)
T ss_pred CcHHHHHHhhccccccccccC------H----------H--------------HHHHHHHHHHHHcCCCCCcccCchhh-
Confidence 999999988543210000000 0 0 0012356789999998764 566776
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.++||+|++|+
T Consensus 142 ----LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd-~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 142 ----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHK-LNEVKAVCDTICVIR 215 (500)
T ss_pred ----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCc-HHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999975 47787777665 457889999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhc
Q 001228 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLR 498 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 498 (1119)
+|++++.|+.+++.. .+ .
T Consensus 216 ~G~i~~~~~~~~~~~---------------~~-----------------------------~------------------ 233 (500)
T TIGR02633 216 DGQHVATKDMSTMSE---------------DD-----------------------------I------------------ 233 (500)
T ss_pred CCeEeeecCcccCCH---------------HH-----------------------------H------------------
Confidence 999987654321100 00 0
Q ss_pred CCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhH
Q 001228 499 VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578 (1119)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g 578 (1119)
.. . +.
T Consensus 234 -----------------------------~~-~----------------------------~~----------------- 238 (500)
T TIGR02633 234 -----------------------------IT-M----------------------------MV----------------- 238 (500)
T ss_pred -----------------------------HH-H----------------------------Hh-----------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHH
Q 001228 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658 (1119)
Q Consensus 579 ~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~ 658 (1119)
+..
T Consensus 239 --------------------------------------------------------------------~~~--------- 241 (500)
T TIGR02633 239 --------------------------------------------------------------------GRE--------- 241 (500)
T ss_pred --------------------------------------------------------------------Ccc---------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCC
Q 001228 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738 (1119)
Q Consensus 659 ~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 738 (1119)
.
T Consensus 242 ---------------------------------------------------~---------------------------- 242 (500)
T TIGR02633 242 ---------------------------------------------------I---------------------------- 242 (500)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred ccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhccc
Q 001228 739 RWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG 818 (1119)
Q Consensus 739 ~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1119)
.. . + .
T Consensus 243 -------~~---~------------~--------------------------------~--------------------- 247 (500)
T TIGR02633 243 -------TS---L------------Y--------------------------------P--------------------- 247 (500)
T ss_pred -------cc---c------------c--------------------------------c---------------------
Confidence 00 0 0 0
Q ss_pred ccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEE
Q 001228 819 HEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTAL 898 (1119)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l 898 (1119)
.. . . +. ....++++|+++.++. .++..+|+|+||+|++||++||
T Consensus 248 --------~~-~----~------~~-------~~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l 291 (500)
T TIGR02633 248 --------HE-P----H------EI-------GDVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGV 291 (500)
T ss_pred --------cc-c----c------CC-------CCceEEEeCCcccccc----------cccccccccceeEEeCCcEEEE
Confidence 00 0 0 00 0012456666543210 0123589999999999999999
Q ss_pred EcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCC---CCCCCCCHHHHHHHHHH--hhc
Q 001228 899 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAW--LRL 969 (1119)
Q Consensus 899 ~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~--l~~ 969 (1119)
+|+||||||||+++|+|..++ +.+|+|.++|.++.. ...++.+||++|++ .+++.+||+||+.+... +..
T Consensus 292 ~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~ 370 (500)
T TIGR02633 292 AGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCF 370 (500)
T ss_pred eCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhcc
Confidence 999999999999999998652 147999999977532 23356799999996 47888999999987532 111
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q 001228 970 SSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048 (1119)
Q Consensus 970 ~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~ 1048 (1119)
..........+.+.++++.+++.+ ..++. +..||||||||++|||+|+.+|+||||||||+|||+.+++.+++.
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 445 (500)
T TIGR02633 371 KMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKL 445 (500)
T ss_pred CCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHH
Confidence 001122333456889999999964 45665 347999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1049 l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|++++++|.|||++|||++ ++...||++++|.+ |+++..++..
T Consensus 446 l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 446 INQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 9999888999999999985 57778999999975 7888877543
No 28
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-64 Score=609.13 Aligned_cols=452 Identities=22% Similarity=0.295 Sum_probs=342.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999886 999999998875322 23579999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.++......+. .+.. +....++.+++.+||++..++.+++
T Consensus 94 ~tv~~~l~~~~~~~~~~~-----------------~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-----------------VNRR--------------LLNYEAREQLEHLGVDIDPDTPLKY-- 140 (501)
T ss_pred CCHHHHHHhcccccccCC-----------------CCHH--------------HHHHHHHHHHHHcCCCCCcCCchhh--
Confidence 999999988532100000 0000 0012346688999998878888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||+|++|++
T Consensus 141 ---LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 141 ---LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKD 215 (501)
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999875 477887777665 478899999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|+++..++..+. . + . ++..+
T Consensus 216 G~i~~~~~~~~~-----------------------~-~---~----------------~~~~~----------------- 235 (501)
T PRK11288 216 GRYVATFDDMAQ-----------------------V-D---R----------------DQLVQ----------------- 235 (501)
T ss_pred CEEEeecCcccc-----------------------C-C---H----------------HHHHH-----------------
Confidence 999854421000 0 0 0 00000
Q ss_pred CCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHH
Q 001228 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1119)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~ 579 (1119)
. +.... .
T Consensus 236 -------------------------------~----------------------------~~~~~-----~--------- 242 (501)
T PRK11288 236 -------------------------------A----------------------------MVGRE-----I--------- 242 (501)
T ss_pred -------------------------------H----------------------------hcCCC-----c---------
Confidence 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHH
Q 001228 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1119)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 659 (1119)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCc
Q 001228 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1119)
Q Consensus 660 l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1119)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhcccc
Q 001228 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1119)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1119)
.. . . .
T Consensus 243 ------~~---~-------------~-------------------------------~---------------------- 247 (501)
T PRK11288 243 ------GD---I-------------Y-------------------------------G---------------------- 247 (501)
T ss_pred ------cc---c-------------c-------------------------------c----------------------
Confidence 00 0 0 0
Q ss_pred cccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEE
Q 001228 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1119)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~ 899 (1119)
..+. +..+..++++|+++ ..+++|+||+|++||++||+
T Consensus 248 -------~~~~------------------~~~~~~l~~~~~~~-----------------~~~l~~isl~i~~Ge~~~ii 285 (501)
T PRK11288 248 -------YRPR------------------PLGEVRLRLDGLKG-----------------PGLREPISFSVRAGEIVGLF 285 (501)
T ss_pred -------cccc------------------CCCCcEEEEecccc-----------------CCcccceeEEEeCCcEEEEE
Confidence 0000 00011345666542 13899999999999999999
Q ss_pred cCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCC---CCCCCCCHHHHHHHHHHhhcCC-
Q 001228 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAWLRLSS- 971 (1119)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~l~~~~- 971 (1119)
||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++.+|+.||+.+........
T Consensus 286 G~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 363 (501)
T PRK11288 286 GLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRA 363 (501)
T ss_pred cCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhccc
Confidence 9999999999999999865 458999999976532 22345799999996 3788899999998753211100
Q ss_pred C--ccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q 001228 972 D--VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048 (1119)
Q Consensus 972 ~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~ 1048 (1119)
. ......++.+.++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..++++
T Consensus 364 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 438 (501)
T PRK11288 364 GCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNV 438 (501)
T ss_pred ccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHH
Confidence 0 01222335678899999994 5666664 47999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCC
Q 001228 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE 1095 (1119)
Q Consensus 1049 l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~ 1095 (1119)
|++++++|.|||++|||++ .+...||++++|.+ |++++.|+.++.
T Consensus 439 l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 439 IYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred HHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 9999888999999999985 57788999999975 789999877643
No 29
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-63 Score=598.99 Aligned_cols=450 Identities=20% Similarity=0.291 Sum_probs=340.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999886 999999999875432 13569999999988999
Q ss_pred CCHHHHHHHhhh-hcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 260 MTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
+||+||+.|... ..+.. .+.+ +....++.+++.+||++..++.+++
T Consensus 88 ~tv~~~l~~~~~~~~~~~-------------------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~- 134 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMF-------------------VDQD-------------KMYRDTKAIFDELDIDIDPRAKVAT- 134 (491)
T ss_pred CCHHHHhhcccccccccc-------------------cCHH-------------HHHHHHHHHHHHcCCCCCccCchhh-
Confidence 999999987531 10000 0000 0012356688999999888888877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++ .+.|+|++.|++ .++.++||+|++|+
T Consensus 135 ----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l~ 208 (491)
T PRK10982 135 ----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITILR 208 (491)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 477877776654 57889999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhc
Q 001228 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLR 498 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 498 (1119)
+|+++..|+.+++.. + +..+
T Consensus 209 ~G~i~~~~~~~~~~~----------------~----------------------------~~~~---------------- 228 (491)
T PRK10982 209 DGQWIATQPLAGLTM----------------D----------------------------KIIA---------------- 228 (491)
T ss_pred CCEEEeecChhhCCH----------------H----------------------------HHHH----------------
Confidence 999998776543200 0 0000
Q ss_pred CCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhH
Q 001228 499 VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578 (1119)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g 578 (1119)
. ++...
T Consensus 229 --------------------------------~----------------------------~~~~~-------------- 234 (491)
T PRK10982 229 --------------------------------M----------------------------MVGRS-------------- 234 (491)
T ss_pred --------------------------------H----------------------------HhCCC--------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHH
Q 001228 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658 (1119)
Q Consensus 579 ~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~ 658 (1119)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCC
Q 001228 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738 (1119)
Q Consensus 659 ~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 738 (1119)
+
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred ccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhccc
Q 001228 739 RWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG 818 (1119)
Q Consensus 739 ~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1119)
. . .+ .
T Consensus 236 -------~----~-----------~~--------------------------------~--------------------- 240 (491)
T PRK10982 236 -------T----Q-----------RF--------------------------------P--------------------- 240 (491)
T ss_pred -------c----c-----------cc--------------------------------c---------------------
Confidence 0 0 00 0
Q ss_pred ccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEE
Q 001228 819 HEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTAL 898 (1119)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l 898 (1119)
. . .. . + .+..+.++|+++.. ..+|+||||+|++||++||
T Consensus 241 --------~-~-----~~-----~------~-~~~~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l 279 (491)
T PRK10982 241 --------D-K-----EN-----K------P-GEVILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGI 279 (491)
T ss_pred --------c-c-----cC-----C------C-CCcEEEEeCccccc---------------CcccceeeEEEeCCcEEEE
Confidence 0 0 00 0 0 01135677776521 2489999999999999999
Q ss_pred EcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCC---CCCCCCHHHHHHHHHH--hhc
Q 001228 899 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDI---HSPYVTVYESLLYSAW--LRL 969 (1119)
Q Consensus 899 ~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~---~~~~~tv~e~l~~~~~--l~~ 969 (1119)
+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++. +++.+|+.+|..+... ...
T Consensus 280 ~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (491)
T PRK10982 280 AGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKN 357 (491)
T ss_pred ecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcc
Confidence 99999999999999999876 458999999977532 123456899999853 5778888877433211 100
Q ss_pred CCC-ccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 001228 970 SSD-VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047 (1119)
Q Consensus 970 ~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~ 1047 (1119)
... .......+.+.++++.+++. +..++. +.+|||||||||+|||+|+.+|+||||||||+|||+.++..+++
T Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~ 432 (491)
T PRK10982 358 KVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ 432 (491)
T ss_pred cccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHH
Confidence 001 11223345678899999985 445655 45799999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1048 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1048 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
.|+++.++|.|||++||+++ ++...||++++|.+ |+++..++..
T Consensus 433 ~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 433 LIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred HHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 99999888999999999986 57788999999975 7888776554
No 30
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.7e-62 Score=588.54 Aligned_cols=447 Identities=19% Similarity=0.288 Sum_probs=327.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCC--C-
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLH--H- 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~--~- 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.. +
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhcc
Confidence 35999999999999999999999999999999999999886 999999997654322 12458999998542 1
Q ss_pred -----CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc
Q 001228 258 -----GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1119)
Q Consensus 258 -----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 332 (1119)
..+||+|++.+... ....++.+++.+||++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~l~~~~l~~~~~ 130 (490)
T PRK10938 93 PGEDDTGRTTAEIIQDEVK------------------------------------------DPARCEQLAQQFGITALLD 130 (490)
T ss_pred cchhhccccHHHhcccchh------------------------------------------HHHHHHHHHHHcCCHhhhh
Confidence 14677777643100 0113456889999998889
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++. +.|+|++.|++ .++.++||
T Consensus 131 ~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~-~~~~~~~d 203 (490)
T PRK10938 131 RRFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRF-DEIPDFVQ 203 (490)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHhhCC
Confidence 98887 9999999999999999999999999999999999999999999998764 77888877664 57889999
Q ss_pred eEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhh
Q 001228 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQ 492 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 492 (1119)
+|++|++|+++++|+++++... +.+....
T Consensus 204 ~v~~l~~G~i~~~~~~~~~~~~---------------~~~~~~~------------------------------------ 232 (490)
T PRK10938 204 FAGVLADCTLAETGEREEILQQ---------------ALVAQLA------------------------------------ 232 (490)
T ss_pred EEEEEECCEEEEeCCHHHHhcc---------------hhhhhhh------------------------------------
Confidence 9999999999999887654210 0000000
Q ss_pred HHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 001228 493 IASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572 (1119)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~ 572 (1119)
.. + ....
T Consensus 233 ------------------------------------~~------~-------------------------------~~~~ 239 (490)
T PRK10938 233 ------------------------------------HS------E-------------------------------QLEG 239 (490)
T ss_pred ------------------------------------hh------h-------------------------------ccCc
Confidence 00 0 0000
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchH
Q 001228 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAA 652 (1119)
Q Consensus 573 ~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 652 (1119)
T Consensus 240 -------------------------------------------------------------------------------- 239 (490)
T PRK10938 240 -------------------------------------------------------------------------------- 239 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHH
Q 001228 653 SRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLV 732 (1119)
Q Consensus 653 ~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 732 (1119)
T Consensus 240 -------------------------------------------------------------------------------- 239 (490)
T PRK10938 240 -------------------------------------------------------------------------------- 239 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccch
Q 001228 733 NEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGE 812 (1119)
Q Consensus 733 nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~ 812 (1119)
.. .+.. ...
T Consensus 240 -------~~--~~~~--~~~------------------------------------------------------------ 248 (490)
T PRK10938 240 -------VQ--LPEP--DEP------------------------------------------------------------ 248 (490)
T ss_pred -------cc--cCcc--ccc------------------------------------------------------------
Confidence 00 0000 000
Q ss_pred hhhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeC
Q 001228 813 KQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRP 892 (1119)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~ 892 (1119)
... .. . +.....++++|+++.++ ++.+|+|+||+|++
T Consensus 249 --------------~~~-----~~-----~------~~~~~~l~~~~l~~~~~-------------~~~il~~vsl~i~~ 285 (490)
T PRK10938 249 --------------SAR-----HA-----L------PANEPRIVLNNGVVSYN-------------DRPILHNLSWQVNP 285 (490)
T ss_pred --------------ccc-----cc-----c------CCCCceEEEeceEEEEC-------------CeeEEeeceEEEcC
Confidence 000 00 0 00011356777765432 24599999999999
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCCCCC--CCCHHHHHHHHHH
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIHSP--YVTVYESLLYSAW 966 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~~~~--~~tv~e~l~~~~~ 966 (1119)
||++||+||||||||||+++|+|.... ..+|+|.++|.+... ...++.+||++|++.+++ ..++++++.+...
T Consensus 286 Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 364 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF 364 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccc
Confidence 999999999999999999999996431 147999999976421 123567999999876543 3567666654321
Q ss_pred h--hcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001228 967 L--RLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1119)
Q Consensus 967 l--~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1043 (1119)
- ....... ....+.++++++.+++.+ ..++. +..|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 438 (490)
T PRK10938 365 DSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQ 438 (490)
T ss_pred cccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 0 0001111 223456889999999986 66665 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC-CeEEEEecCccHHHHH-hhceEeEEecCcEEEEe
Q 001228 1044 IVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1044 ~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~~l~l~~gG~v~~~ 1089 (1119)
.+++.|++++++| .|||++||+++ ++.+ .+|++++|.+ |++++.
T Consensus 439 ~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 439 LVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred HHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 9999999998776 46999999975 3544 4799999975 666554
No 31
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-59 Score=573.71 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=162.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSF-------------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEE-------------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 36777776543 23469999999999999999999999999999999999865 4589999853 2
Q ss_pred ChhhhcceEEEEccCC-CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHH
Q 001228 934 NQETFARVSGYCEQND-IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gq 1011 (1119)
..+||++|++ .+++.+||.|++.+....... ... ...+.++++.+++.+ ..++. +.+|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999996 677889999999876422211 111 123457899999864 44555 35799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-Eec
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YAG 1090 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~g 1090 (1119)
|||++|||+|+.+|++|||||||+|||+.++..+++.|+++. | |||++||+++ .+...||++++|.++|++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999975 5677899999998767765 566
Q ss_pred CC
Q 001228 1091 PL 1092 (1119)
Q Consensus 1091 ~~ 1092 (1119)
+.
T Consensus 527 ~~ 528 (556)
T PRK11819 527 NF 528 (556)
T ss_pred CH
Confidence 53
No 32
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.6e-59 Score=573.59 Aligned_cols=202 Identities=21% Similarity=0.295 Sum_probs=161.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ +++.+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGF-------------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEE-------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECC-c-
Confidence 36777776543 23469999999999999999999999999999999999865 4589999854 2
Q ss_pred ChhhhcceEEEEccCC-CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHH
Q 001228 934 NQETFARVSGYCEQND-IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gq 1011 (1119)
..+||++|++ .+++.+||.|++.+...... .... ...+.++++.+++.+ ..++. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1589999986 47788999999987642211 1111 123457899999864 44555 35799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-Eec
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YAG 1090 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~g 1090 (1119)
||||+|||+|+.+|+||||||||+|||+.++..+++.|+++. .|||++||+++ .+...||++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999975 4667899999998766765 555
Q ss_pred CC
Q 001228 1091 PL 1092 (1119)
Q Consensus 1091 ~~ 1092 (1119)
+.
T Consensus 525 ~~ 526 (552)
T TIGR03719 525 NY 526 (552)
T ss_pred CH
Confidence 53
No 33
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.2e-59 Score=505.30 Aligned_cols=471 Identities=24% Similarity=0.330 Sum_probs=355.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCcceEEEECCccCCCCcc-------cceEEEecc
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEFVP-------QRTCAYISQ 252 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~--~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q 252 (1119)
....++++|||.+++||.+||+|.||||||-..+.+.|+++. ....+|+|.|+|+++-.... ...|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 356799999999999999999999999999999999999876 34568999999998754432 146999999
Q ss_pred CC--CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc
Q 001228 253 HD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (1119)
Q Consensus 253 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 330 (1119)
++ .+.|-.|+...+.-..++... +++ ...+.++-++|+..|+.+-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------~~~------------------------~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------LSR------------------------AAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------ccH------------------------HHHHHHHHHHHHHcCCCch
Confidence 97 567777888877655554311 111 1122345668888899765
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh
Q 001228 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (1119)
Q Consensus 331 ~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 410 (1119)
.... +.+...|||||||||.||.||+.+|++|+-||||++||...+.+|.++|+++.+++|..+++.+ |...-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfIT-HDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT-HDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEe-ccHHHHHHh
Confidence 4322 2445669999999999999999999999999999999999999999999999988887766655 556678899
Q ss_pred cCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhh
Q 001228 411 FDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490 (1119)
Q Consensus 411 ~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 490 (1119)
+|+|+||.+|+++++|+.+++.. .|.+ ||
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pY------------------ 253 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PY------------------ 253 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hH------------------
Confidence 99999999999999999876621 1211 00
Q ss_pred hhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 001228 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDM 570 (1119)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~ 570 (1119)
. |..+
T Consensus 254 -------------------------------------T-r~Ll------------------------------------- 258 (534)
T COG4172 254 -------------------------------------T-RKLL------------------------------------- 258 (534)
T ss_pred -------------------------------------H-HHHH-------------------------------------
Confidence 0 0000
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcc
Q 001228 571 NGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDP 650 (1119)
Q Consensus 571 ~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~ 650 (1119)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHH
Q 001228 651 AASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730 (1119)
Q Consensus 651 ~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 730 (1119)
.
T Consensus 259 --------------------------~----------------------------------------------------- 259 (534)
T COG4172 259 --------------------------A----------------------------------------------------- 259 (534)
T ss_pred --------------------------h-----------------------------------------------------
Confidence 0
Q ss_pred HHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeecc
Q 001228 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEED 810 (1119)
Q Consensus 731 ~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~ 810 (1119)
..+.+.....
T Consensus 260 -----------aeP~g~~~p~----------------------------------------------------------- 269 (534)
T COG4172 260 -----------AEPSGDPPPL----------------------------------------------------------- 269 (534)
T ss_pred -----------cCCCCCCCCC-----------------------------------------------------------
Confidence 0000000000
Q ss_pred chhhhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeee
Q 001228 811 GEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVF 890 (1119)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i 890 (1119)
.+..|.-++.+|+.-.++.+..+ ..-..+...++++||+++
T Consensus 270 -------------------------------------~~~~~~ll~~~~v~v~f~i~~g~--~~r~~~~~~AVd~isl~L 310 (534)
T COG4172 270 -------------------------------------PEDAPVLLEVEDLRVWFPIKGGF--LRRTVDHLRAVDGISLTL 310 (534)
T ss_pred -------------------------------------CCCCCceEEecceEEEEecCCcc--ccccchheEEeccceeEe
Confidence 00001111222221111111000 000112346899999999
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCC--CCCCCCHHHHHH
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDI--HSPYVTVYESLL 962 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~--~~~~~tv~e~l~ 962 (1119)
++||-+||||.||||||||=.+|.++.. .+|+|.++|.++.. ..+++.+-.|+|||. +.|.+||.+.+.
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~ 387 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE 387 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence 9999999999999999999999999775 35999999998753 245678999999986 779999999998
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 963 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
-+..+..+ ..+..++++.+.++|+.+||++- .+++ +.++|||||||++|||||+.+|++++||||||.||..-
T Consensus 388 EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SV 461 (534)
T COG4172 388 EGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV 461 (534)
T ss_pred hhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHH
Confidence 87766543 45677888999999999999763 4444 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1042 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
++.|.++++++.+ .|.+-++||||+. -+-..||++++|+ +|+|++.|+..
T Consensus 462 QaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~GkiVE~G~~~ 512 (534)
T COG4172 462 QAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-DGKIVEQGPTE 512 (534)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-CCEEeeeCCHH
Confidence 9999999999975 4999999999975 4667899999997 58999999853
No 34
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-59 Score=567.22 Aligned_cols=198 Identities=19% Similarity=0.283 Sum_probs=161.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 467788775442 3459999999999999999999999999999999999865 45799999873
Q ss_pred ChhhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHH
Q 001228 934 NQETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~G 1010 (1119)
+.+||++|++. +.+.+|+.|++.+.. .. . ..++.+.++++.+++. +..++. +.+||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 46999999874 456799999986421 11 1 1134577899999984 555665 4579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-Ee
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~ 1089 (1119)
||||++|||+|+.+|+||||||||+|||+.+...+++.|+++ +.|||++||+++ .+...||++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999986 459999999975 56677999999986 5665 77
Q ss_pred cCC
Q 001228 1090 GPL 1092 (1119)
Q Consensus 1090 g~~ 1092 (1119)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 753
No 35
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=9.1e-58 Score=555.63 Aligned_cols=200 Identities=22% Similarity=0.250 Sum_probs=163.3
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
.|+++||+|++||++||+|+||||||||+++|+|... +.+|+|.++ ..++|++|++.+.+.+||+|++
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----------eeEEEecccccCCCCCcHHHHH
Confidence 5899999999999999999999999999999999875 457999875 1489999998888899999999
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
.+.... . . . ...+.++++.+++.+..++. +..|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 422 ~~~~~~--~-~--~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 422 RSITDD--L-G--S---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred HHHhhh--c-C--h---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 874211 1 1 1 12467899999998777776 45799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCC---hHHHHHHhhhhcCCCc
Q 001228 1042 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE---SHKLIEYFEVSIPFFP 1111 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~---~~~l~~~f~~~i~g~~ 1111 (1119)
+..++++|++++++ |+|||++|||++ .+...+|++++|. |++...|..... .+.+..+++ .+ |+.
T Consensus 489 ~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~~~~~~~~~~~~~~l~-~~-~i~ 557 (590)
T PRK13409 489 RLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHASGPMDMREGMNRFLK-EL-GIT 557 (590)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--CcceeeeecCCchhHHHHHHHHHH-Hc-CCE
Confidence 99999999999764 899999999975 4667899999995 367666664332 233445555 44 443
No 36
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-56 Score=547.76 Aligned_cols=197 Identities=22% Similarity=0.332 Sum_probs=157.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+|+||+|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 36777776543 23469999999999999999999999999999999999865 45799998641
Q ss_pred ChhhhcceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHH
Q 001228 934 NQETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~G 1010 (1119)
..+||++|+. .+.+..|+.+++.. .. .......+.++++.+++.. ..++. +..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHH
Confidence 2589999974 24455677776531 11 0112345788999999853 45555 3579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-Ee
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~ 1089 (1119)
|||||+||++|+.+|+||||||||+|||+.+...+.++|+++ . .|||+||||+. .+...||++++|.+ |+++ +.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999975 46678999999975 6775 77
Q ss_pred cCC
Q 001228 1090 GPL 1092 (1119)
Q Consensus 1090 g~~ 1092 (1119)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 764
No 37
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.5e-56 Score=550.40 Aligned_cols=202 Identities=24% Similarity=0.314 Sum_probs=160.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 36777776543 23469999999999999999999999999999999999865 45799988 4321
Q ss_pred ChhhhcceEEEEccCC-CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHH
Q 001228 934 NQETFARVSGYCEQND-IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gq 1011 (1119)
.+||++|++ .+++.+||.|++.+..... ... .....+.++++.+++. +..++. +..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHH
Confidence 489999985 5778899999998753210 111 1123467888888885 345555 35799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-cCcEEEEec
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-RGGRVIYAG 1090 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-~gG~v~~~g 1090 (1119)
||||+||++|+.+|++|||||||+|||+.+...+.++|+++ +.|||+||||.+ .+...||+++++. +|..+.|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999886 459999999975 4667899999997 444445666
Q ss_pred CC
Q 001228 1091 PL 1092 (1119)
Q Consensus 1091 ~~ 1092 (1119)
+.
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
No 38
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-56 Score=508.80 Aligned_cols=462 Identities=24% Similarity=0.360 Sum_probs=352.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc----ceEEEeccCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHH 257 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 257 (1119)
...++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++.....++ .-|+.|.|+..+.
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 4578999999999999999999999999999999999999998 99999999987655442 4699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
|+|||.|||.++...... ... +|. .........+|+.+|+....++.|++
T Consensus 96 p~LsVaeNifLgre~~~~---~g~------------------id~---------~~m~~~A~~~l~~lg~~~~~~~~v~~ 145 (500)
T COG1129 96 PNLSVAENIFLGREPTRR---FGL------------------IDR---------KAMRRRARELLARLGLDIDPDTLVGD 145 (500)
T ss_pred CCccHHHHhhcccccccC---CCc------------------cCH---------HHHHHHHHHHHHHcCCCCChhhhhhh
Confidence 999999999775433210 000 000 01122356789999997669999998
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||+||||-|.||+|+..+++|++|||||+.|+...+..+.+.++++.. .|.++|.. .|-..|++++||+|.||
T Consensus 146 -----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~I-SHrl~Ei~~i~DritVl 218 (500)
T COG1129 146 -----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYI-SHRLDEVFEIADRITVL 218 (500)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE-cCcHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999975 46665554 56788999999999999
Q ss_pred cCCeEEEEcCh-hHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhh
Q 001228 418 SEGQIVYQGPR-DNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASD 496 (1119)
Q Consensus 418 ~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 496 (1119)
.+|+.+..++. .+.-. ++.
T Consensus 219 RDG~~v~~~~~~~~~~~--------------------------------------------~~l---------------- 238 (500)
T COG1129 219 RDGRVVGTRPTAAETSE--------------------------------------------DEL---------------- 238 (500)
T ss_pred eCCEEeeecccccCCCH--------------------------------------------HHH----------------
Confidence 99999876552 21100 000
Q ss_pred hcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchh
Q 001228 497 LRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY 576 (1119)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~ 576 (1119)
T Consensus 239 -------------------------------------------------------------------------------- 238 (500)
T COG1129 239 -------------------------------------------------------------------------------- 238 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHH
Q 001228 577 FGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFF 656 (1119)
Q Consensus 577 ~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~ 656 (1119)
+-.|+|-
T Consensus 239 -----------------------------------------------------------------v~~MvGr-------- 245 (500)
T COG1129 239 -----------------------------------------------------------------VRLMVGR-------- 245 (500)
T ss_pred -----------------------------------------------------------------HHHhhCc--------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhc
Q 001228 657 KQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFL 736 (1119)
Q Consensus 657 ~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 736 (1119)
++.
T Consensus 246 -----------------------------------------------------------------------------~~~ 248 (500)
T COG1129 246 -----------------------------------------------------------------------------ELE 248 (500)
T ss_pred -----------------------------------------------------------------------------chh
Confidence 000
Q ss_pred CCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhc
Q 001228 737 GGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRA 816 (1119)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 816 (1119)
..|.
T Consensus 249 -~~~~--------------------------------------------------------------------------- 252 (500)
T COG1129 249 -DLFP--------------------------------------------------------------------------- 252 (500)
T ss_pred -hhcc---------------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEE
Q 001228 817 SGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLT 896 (1119)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~ 896 (1119)
. . ... ...+..+++++++. ...++||||++++||++
T Consensus 253 ----------~-~----------~~~------~~~~~~l~v~~l~~-----------------~~~~~dvSf~vr~GEIl 288 (500)
T COG1129 253 ----------E-P----------PEE------GIGEPVLEVRNLSG-----------------GGKVRDVSFTVRAGEIL 288 (500)
T ss_pred ----------c-c----------ccc------CCCCcEEEEecCCC-----------------CCceeCceeEEeCCcEE
Confidence 0 0 000 00112234445431 11588999999999999
Q ss_pred EEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCC---CCCCCCHHHHHHHHHHhhc
Q 001228 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDI---HSPYVTVYESLLYSAWLRL 969 (1119)
Q Consensus 897 ~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~---~~~~~tv~e~l~~~~~l~~ 969 (1119)
||.|-=|||+|-|+.+|+|... ...|+|.++|.+... ...+..++|||.+.. ++..++|.+|+.++...+.
T Consensus 289 GiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~ 366 (500)
T COG1129 289 GIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRF 366 (500)
T ss_pred EEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhh
Confidence 9999999999999999999654 357999999997532 345678999998754 6789999999988732221
Q ss_pred C-C-CccHHHHHHHHHHHHHHcCCCCcc-ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q 001228 970 S-S-DVDTKKRKMFVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046 (1119)
Q Consensus 970 ~-~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~ 1046 (1119)
. . -.+.....+.+++..+.+++.... +.. +.+||||.+||+.|||+|..+|+||||||||.|+|.-++.+|+
T Consensus 367 ~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy 441 (500)
T COG1129 367 SRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIY 441 (500)
T ss_pred ccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHH
Confidence 1 1 245556667789999999986432 232 5679999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC-CChHHHHHH
Q 001228 1047 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG-HESHKLIEY 1102 (1119)
Q Consensus 1047 ~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~-~~~~~l~~~ 1102 (1119)
++|++++++|++||++|-++. ++...|||+++|. +|+++..=+-. .+.+++..+
T Consensus 442 ~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~~~~~tee~im~~ 496 (500)
T COG1129 442 RLIRELAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELDREEATEEAIMAA 496 (500)
T ss_pred HHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEeccccCCHHHHHHH
Confidence 999999999999999999985 7888999999997 58887644433 344555443
No 39
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.3e-52 Score=518.81 Aligned_cols=199 Identities=19% Similarity=0.246 Sum_probs=154.6
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++..+|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 467888876542 12358999999999999999999999999999999999865 45799988652
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqr 1012 (1119)
..+||++|++. +.+++.++..+....... ... .+.+.++++.+++.+ ..++. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35999999853 345565654332111111 111 234778999999963 44554 457999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-EecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~g~ 1091 (1119)
|||+|||+|+.+|++|||||||+|||+.+...+.+.+++. . .|||++|||+. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888775 3 49999999975 46678999999975 7776 6665
No 40
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=8.6e-53 Score=498.28 Aligned_cols=222 Identities=28% Similarity=0.332 Sum_probs=174.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
..+++|+|+|+.+.+|+.++|+|+|||||||||++|+|.+.|+ +|+|...+ .-.++|++|++...+..|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCcc
Confidence 3567999999999999999999999999999999999999987 99998854 236999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChh---HHHH-HHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE---IDAF-MKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
|.+.+.-+.. ..++...++...... .++++ .+.. .......++..+..+..++..||+... ++.+++
T Consensus 83 v~~~v~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~ 153 (530)
T COG0488 83 VLDYVIEGFG-----ELRELLAELEEAYAL---LADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS 153 (530)
T ss_pred HHHHHHhhhH-----HHHHHHHHHHHHHHh---cccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh
Confidence 9999965432 222222222221111 11111 1111 112234556777888999999999987 899988
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||.||++|++|+.+|++|||||||++||..+..++-+.|+++ .| |+|++ .|.....-+.|++|+-+
T Consensus 154 -----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiV-SHDR~FLd~V~t~I~~l 223 (530)
T COG0488 154 -----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVV-SHDRYFLDNVATHILEL 223 (530)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEE-eCCHHHHHHHhhheEEe
Confidence 9999999999999999999999999999999999999999999864 24 55554 56677888999999999
Q ss_pred cCCeE-EEEcChhHHHH
Q 001228 418 SEGQI-VYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~i-v~~G~~~~~~~ 433 (1119)
+.|++ .|.|.++...+
T Consensus 224 d~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 224 DRGKLTPYKGNYSSYLE 240 (530)
T ss_pred cCCceeEecCCHHHHHH
Confidence 99987 67888776543
No 41
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.7e-51 Score=458.28 Aligned_cols=463 Identities=22% Similarity=0.318 Sum_probs=354.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc----ceEEEeccCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHHG 258 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 258 (1119)
...+++|||+.|++||+.+|+|.||||||||+++|.|.+.|+ +|+|.++|++..-..+. ..||+|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 577999999999999999999999999999999999999998 99999999988665543 46999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
++||.||+..+..-.. +.+. +. ......++.+.+.+||+-..|.+|++
T Consensus 93 ~lTV~ENiiLg~e~~~-~~~~-------------------~~-----------~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSK-GGLI-------------------DR-----------RQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCcccc-cccc-------------------CH-----------HHHHHHHHHHHHHhCCCCCccceeec-
Confidence 9999999988654210 0000 00 01123467789999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
||=||||||.|-++|+.+|++|+|||||+-|-|..+.++.+.|+++++ .|+|+|+.+ |-..|+.++||++.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~IT-HKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFIT-HKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-ccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999987 478877765 45679999999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhc
Q 001228 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLR 498 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 498 (1119)
.|+++-.-++ . ++ .+.++.++
T Consensus 215 ~Gkvvgt~~~--~-----------------~~------------------------~t~~ela~---------------- 235 (501)
T COG3845 215 RGKVVGTVDP--V-----------------AE------------------------TTEEELAE---------------- 235 (501)
T ss_pred CCeEEeeecC--C-----------------CC------------------------CCHHHHHH----------------
Confidence 9998643210 0 00 00000000
Q ss_pred CCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhH
Q 001228 499 VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578 (1119)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g 578 (1119)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHH
Q 001228 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658 (1119)
Q Consensus 579 ~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~ 658 (1119)
.|+|-
T Consensus 236 -----------------------------------------------------------------lMvG~---------- 240 (501)
T COG3845 236 -----------------------------------------------------------------LMVGR---------- 240 (501)
T ss_pred -----------------------------------------------------------------HhcCC----------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCC
Q 001228 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738 (1119)
Q Consensus 659 ~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 738 (1119)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T COG3845 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhccc
Q 001228 739 RWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG 818 (1119)
Q Consensus 739 ~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1119)
.+. .
T Consensus 241 ------------------~v~----~------------------------------------------------------ 244 (501)
T COG3845 241 ------------------EVV----L------------------------------------------------------ 244 (501)
T ss_pred ------------------ccc----c------------------------------------------------------
Confidence 000 0
Q ss_pred ccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEE
Q 001228 819 HEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTAL 898 (1119)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l 898 (1119)
..... . . .| .+..++++|++-..+ .....+++|||++++||++||
T Consensus 245 --------~~~~~-------~--~-----~p-g~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGI 289 (501)
T COG3845 245 --------RVVKP-------P--S-----TP-GEVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGI 289 (501)
T ss_pred --------ccccC-------C--C-----CC-CCeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEE
Confidence 00000 0 0 00 012345555542111 113579999999999999999
Q ss_pred EcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC----Chhh-hcceEEEEccCCC---CCCCCCHHHHHHHHHHhh--
Q 001228 899 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK----NQET-FARVSGYCEQNDI---HSPYVTVYESLLYSAWLR-- 968 (1119)
Q Consensus 899 ~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~----~~~~-~~~~~gy~~q~~~---~~~~~tv~e~l~~~~~l~-- 968 (1119)
.|..|-|-+.|+.+|+|..+. ..|+|.++|.++ +... .+..++|+|.+.. +.+.+|+.||+.+...-+
T Consensus 290 AGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~ 367 (501)
T COG3845 290 AGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKP 367 (501)
T ss_pred EecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccc
Confidence 999999999999999998652 359999999986 2222 3356999999874 568899999998765321
Q ss_pred --cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q 001228 969 --LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046 (1119)
Q Consensus 969 --~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~ 1046 (1119)
...-.......+.+.++++.+++....... .+..||||++||+-+||+|.++|++|++.+||.|||..+.+.|.
T Consensus 368 ~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~ 443 (501)
T COG3845 368 FSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIH 443 (501)
T ss_pred cccccccCHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHH
Confidence 111244566778889999999886322111 14579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC-ChHHH
Q 001228 1047 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH-ESHKL 1099 (1119)
Q Consensus 1047 ~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~-~~~~l 1099 (1119)
+.|.+.+++|++|++++-+++ +++..+|++.+|.+ |+++...+... +.+++
T Consensus 444 ~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~~t~~~i 495 (501)
T COG3845 444 ERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEEATREEI 495 (501)
T ss_pred HHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-CceecccccccCCHHHH
Confidence 999999999999999999987 79999999999975 89988777653 33443
No 42
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-45 Score=375.34 Aligned_cols=211 Identities=25% Similarity=0.354 Sum_probs=185.1
Q ss_pred ccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC----hhhhcceEEEEcc
Q 001228 872 TEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN----QETFARVSGYCEQ 947 (1119)
Q Consensus 872 ~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~----~~~~~~~~gy~~q 947 (1119)
++.+.++...+|+|||++|++||+++|+|||||||||||+||.|+.. +.+|+|.++|.++. ....|+.+|+|+|
T Consensus 7 ~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ 84 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVFQ 84 (240)
T ss_pred eeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeecc
Confidence 33445667889999999999999999999999999999999999877 46899999996542 3457888999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 948 NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 948 ~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
+..+||++||.||+.++...- ...+.++.++.+.++|+.+||.+.+|.++ ..||||||||++|||||+.+|++
T Consensus 85 ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 85 QFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred cccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHHHHHHHHcCCCCE
Confidence 999999999999999875432 23456777788999999999999999884 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+++|||||.|||+...++.+.+++++++|.|+||+||++.. ..+.+||++.|+ +|++++.|+..
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g~p~ 221 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEGPPE 221 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEecCHH
Confidence 99999999999999999999999999999999999999753 566789999997 58888888753
No 43
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=2.2e-43 Score=397.43 Aligned_cols=205 Identities=20% Similarity=0.220 Sum_probs=156.1
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
|..+.|+|++|.++- +..++++++|.|.+++.+++||||||||||||+++.|... +..|.+.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc
Confidence 345788888875542 2258999999999999999999999999999999999766 34676643222
Q ss_pred cCChhhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 932 PKNQETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 932 ~~~~~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.++++..|... +.-..++.|+++=-. .+ ....+.+..++..+||....+... +++||+
T Consensus 453 --------~~~~~y~Qh~~e~ldl~~s~le~~~~~~-----~~---~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~ 512 (614)
T KOG0927|consen 453 --------NKLPRYNQHLAEQLDLDKSSLEFMMPKF-----PD---EKELEEMRSILGRFGLTGDAQVVP----MSQLSD 512 (614)
T ss_pred --------ccchhhhhhhHhhcCcchhHHHHHHHhc-----cc---cchHHHHHHHHHHhCCCccccccc----hhhccc
Confidence 22344444322 223456666553210 11 234556788999999985433322 568999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
|||+||.+|+.++..|.||+|||||+|||..+...+-++|.+. ..+||++|||.. -+...++++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999999999886 468999999975 477788999999998888999
Q ss_pred cCCCC
Q 001228 1090 GPLGH 1094 (1119)
Q Consensus 1090 g~~~~ 1094 (1119)
|....
T Consensus 589 G~i~~ 593 (614)
T KOG0927|consen 589 GDIEI 593 (614)
T ss_pred ccHHH
Confidence 98643
No 44
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-44 Score=438.03 Aligned_cols=251 Identities=43% Similarity=0.771 Sum_probs=228.6
Q ss_pred cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEEC
Q 001228 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKIS 929 (1119)
Q Consensus 851 ~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~ 929 (1119)
.+..+.|+|+++..+.+.. ..+++|+|||+.++|||++||||||||||||||++|+|+..+| ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3456889998876654321 3468999999999999999999999999999999999998764 688999999
Q ss_pred CccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 930 GYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 930 g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
|++.....+++.+|||+|+|.++|.+||+|++.|++.+|.+.....+++++.++++++.++|.+++|..+|.++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999888889999999999999999999999999887789999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||||+||.+|+.||+||||||||||||+.++..+.++|++++++|+||||++|||+.+++..||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 699999
Q ss_pred cCCCCChHHHHHHhhhhcCCCccCCCCC
Q 001228 1090 GPLGHESHKLIEYFEVSIPFFPALSVDG 1117 (1119)
Q Consensus 1090 g~~~~~~~~l~~~f~~~i~g~~~~~~~~ 1117 (1119)
|+. +++.+||+. -|-| ||+..
T Consensus 253 G~~----~~~~~ff~~--~G~~-~P~~~ 273 (613)
T KOG0061|consen 253 GSP----RELLEFFSS--LGFP-CPELE 273 (613)
T ss_pred cCH----HHHHHHHHh--CCCC-CCCcC
Confidence 986 578999983 5666 66654
No 45
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-44 Score=362.09 Aligned_cols=222 Identities=26% Similarity=0.417 Sum_probs=188.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC----CcccceEEEeccCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----FVPQRTCAYISQHDLHH 257 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~~~~~~~yv~Q~d~~~ 257 (1119)
....+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|+++.. ...++.+|+|+|+..+|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 3567999999999999999999999999999999999999887 9999999976532 12467899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
|++||.||+.++-..-. .+++ .+.+.....+|+.+||.+.+|.+.+.
T Consensus 90 PHlTvleNv~lap~~v~---------~~~k------------------------~eA~~~A~~lL~~VGL~~ka~~yP~q 136 (240)
T COG1126 90 PHLTVLENVTLAPVKVK---------KLSK------------------------AEAREKALELLEKVGLADKADAYPAQ 136 (240)
T ss_pred ccchHHHHHHhhhHHHc---------CCCH------------------------HHHHHHHHHHHHHcCchhhhhhCccc
Confidence 99999999988643110 0011 11223456789999999999999887
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+|||||+.+|+++|+|||||+|||....++.+.++++++. |.|.+|++|. .....+.+|||+.|
T Consensus 137 -----LSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHE-M~FAr~VadrviFm 209 (240)
T COG1126 137 -----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHE-MGFAREVADRVIFM 209 (240)
T ss_pred -----cCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEech-hHHHHHhhheEEEe
Confidence 9999999999999999999999999999999999999999999999984 7888888765 45788999999999
Q ss_pred cCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHh
Q 001228 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~ 454 (1119)
++|+++.+|+++++ |..|.+....+|+..
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 99999999999876 455766666777654
No 46
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.4e-43 Score=377.75 Aligned_cols=221 Identities=29% Similarity=0.432 Sum_probs=191.1
Q ss_pred cccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---hhhhcceEEEEccCCCC
Q 001228 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIH 951 (1119)
Q Consensus 875 ~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~~ 951 (1119)
++|+++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++. ..++++.++|+||.+..
T Consensus 10 ~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~ 87 (258)
T COG1120 10 FGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSA 87 (258)
T ss_pred EEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCC
Confidence 34556789999999999999999999999999999999999776 45899999998864 45688999999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 952 SPYVTVYESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
.+.+||+|.+.++..-+... ....++..+.++++|+.+++.+++++.+ ++||||||||+.|||||+++|+||+|
T Consensus 88 ~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 88 PFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred CCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHHHHHHHHHhcCCCEEEe
Confidence 88999999999875432221 1223444557999999999999999884 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
|||||+||...+.+++++++++. ++|+|||++.||++. ...+||++++|++ |++++.|++.+ ..+.+.+.|.
T Consensus 163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~G~p~evlT~e~l~~Vyg 237 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQGTPEEVLTEENLREVYG 237 (258)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEeecCcchhcCHHHHHHHhC
Confidence 99999999999999999999998 459999999999874 7788999999975 89999998764 5677888887
No 47
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.7e-43 Score=359.43 Aligned_cols=226 Identities=27% Similarity=0.378 Sum_probs=195.9
Q ss_pred ccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEcc
Q 001228 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQ 947 (1119)
Q Consensus 874 ~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q 947 (1119)
.++++.+.+++|||++|++||+++|||+||+||||||++|.|+.. +.+|+|.++|.++.+ ...++++|+++|
T Consensus 15 ~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ 92 (263)
T COG1127 15 TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQ 92 (263)
T ss_pred eeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhheeEEee
Confidence 345677889999999999999999999999999999999999887 458999999998643 245678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001228 948 NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026 (1119)
Q Consensus 948 ~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 1026 (1119)
+-.+|..+||+||+.|.. |.....+.+..++.+..-|+++||... .+.. +++|||||+||++||||++.+|+
T Consensus 93 ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsELSGGM~KRvaLARAialdPe 165 (263)
T COG1127 93 QGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSELSGGMRKRVALARAIALDPE 165 (263)
T ss_pred ccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chhhcchHHHHHHHHHHHhcCCC
Confidence 999999999999999874 344456677777888888999999877 6666 46899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC----ChHHHHH
Q 001228 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH----ESHKLIE 1101 (1119)
Q Consensus 1027 illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~----~~~~l~~ 1101 (1119)
|||+||||+||||.++..+-++|+++.++ |.|+++||||.+ .+...||++++|.+ |+|+..|+..+ +..-+.+
T Consensus 166 ll~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~el~~sd~P~v~q 243 (263)
T COG1127 166 LLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPEELLASDDPWVRQ 243 (263)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHHHHHhCCCHHHHH
Confidence 99999999999999999999999999876 999999999986 68889999999975 89999999764 2234888
Q ss_pred HhhhhcCCCc
Q 001228 1102 YFEVSIPFFP 1111 (1119)
Q Consensus 1102 ~f~~~i~g~~ 1111 (1119)
||. ++++=|
T Consensus 244 f~~-G~~~gp 252 (263)
T COG1127 244 FFN-GIRDGP 252 (263)
T ss_pred Hhc-CCCCCc
Confidence 888 665544
No 48
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-42 Score=369.47 Aligned_cols=228 Identities=28% Similarity=0.419 Sum_probs=189.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|++++++ +..+|+||||+|++|++++|+||||||||||+++|+|..+ +.+|+|.+.|.+.
T Consensus 4 ~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 467777776543 2259999999999999999999999999999999999766 4689999999876
Q ss_pred ChhhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 934 NQETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
.+..-+.++|||||... ....+||+|-+..+...+.. .....+..++.++++|+.+|+.+++++.++ +||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 55444568999999653 23458999999887433321 111223446789999999999999999865 69999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+||+.|||||+++|++|+|||||+|+|+.++..|+++|++++++|+|||+|+||++ .+...||+++.|. +++.+.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999997 5888999999996 5799999
Q ss_pred CCCC--ChHHHHHHhh
Q 001228 1091 PLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1091 ~~~~--~~~~l~~~f~ 1104 (1119)
+..+ ..+++...|.
T Consensus 221 ~~~~~~~~~~l~~~~g 236 (254)
T COG1121 221 PPEEVLTEENLEKAFG 236 (254)
T ss_pred ChhhccCHHHHHHHhC
Confidence 9865 3455766666
No 49
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=370.00 Aligned_cols=203 Identities=27% Similarity=0.357 Sum_probs=182.8
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHS 952 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~ 952 (1119)
...+|+|||++|++||++||+|+||||||||++++.++.. +.+|.|.++|.++.. ..+|+.+|+++|++.++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 3579999999999999999999999999999999999877 468999999976532 34678899999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
...||+||+.|+..+.. .++++..+++.++++.+||.+..+++ +.+|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 99999999999987764 55778889999999999999998888 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||.|||++.+.|.++|+++.++ |.|||+|||+++ -+...||++.+|++ |++++.|+..
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lvE~G~v~ 227 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLVEEGTVS 227 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEEEeccHH
Confidence 99999999999999999999655 999999999975 36678999999974 8999999865
No 50
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-42 Score=361.51 Aligned_cols=197 Identities=26% Similarity=0.410 Sum_probs=174.4
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++...+|+|||++|.+||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++. .....+|||+|++.++|..|
T Consensus 13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcccC--CCCCCEEEEeccCcccchhh
Confidence 344679999999999999999999999999999999999887 45899999998863 23467999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|+||+.|+...+. ....+..+.+.++++.+||.++.++. +.+||||||||++|||||+.+|+||+||||+++
T Consensus 89 v~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 89 VLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred HHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 9999999876653 34455666899999999999999998 458999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecC-cEE
Q 001228 1037 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG-GRV 1086 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~g-G~v 1086 (1119)
||+.++..+++.+.++.+ +++|||+||||.+ +....+|||++|.++ |+|
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCCCcce
Confidence 999999999999999874 5899999999986 677789999999864 444
No 51
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.1e-42 Score=383.48 Aligned_cols=212 Identities=32% Similarity=0.474 Sum_probs=186.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 260 (1119)
.+.+|+|||++|++|++++|+|||||||||||++|+|.+.|+ +|+|.++|++.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 478999999999999999999999999999999999999996 99999999887653 3457899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+|||.|.+++++.... .....++++++.+||++..++.+++
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~~~~~--- 136 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANKKVRT--- 136 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCcchhh---
Confidence 999999999988764210 0122467899999999866677765
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
||+||||||+||.||+++|++|||||||+||||.++.++++.|+++++..+.|+++++|++ .++..+||+|++|++|
T Consensus 137 --lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G 213 (293)
T COG1131 137 --LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDG 213 (293)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999986556888877665 5899999999999999
Q ss_pred eEEEEcChhHHHHHHHh
Q 001228 421 QIVYQGPRDNVLEFFEH 437 (1119)
Q Consensus 421 ~iv~~G~~~~~~~~f~~ 437 (1119)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998776543
No 52
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.4e-42 Score=382.78 Aligned_cols=207 Identities=31% Similarity=0.448 Sum_probs=183.2
Q ss_pred ccccc-cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCC
Q 001228 874 GVGED-RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDI 950 (1119)
Q Consensus 874 ~~~~~-~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~ 950 (1119)
.+.++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||+||++.
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~ 88 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS 88 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhheEEEccCCC
Confidence 34455 5789999999999999999999999999999999999877 368999999987654 466788999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+++.+||+|++.|.+.++.... ....+.++++++.++|.+..++. +++||+||||||.||+||+.+|+||||
T Consensus 89 ~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 89 LYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred CCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999886532 34556799999999999855544 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||||+|||+.++..+++.|++++++| +||+++||+++ ++...||++++|.+ |++++.|+.
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~ 221 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP 221 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 99999999999999999999999887 89999999986 67777999999975 899999965
No 53
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-42 Score=354.37 Aligned_cols=206 Identities=25% Similarity=0.354 Sum_probs=183.1
Q ss_pred ccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCC
Q 001228 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHS 952 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~ 952 (1119)
.|.++.+++|+|++|++||++.++|||||||||+|++|.++.+ +.+|+|.++|.++.. ..+||.+||+-|+-.+|
T Consensus 10 ~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF 87 (309)
T COG1125 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF 87 (309)
T ss_pred hcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhhhcccC
Confidence 3456789999999999999999999999999999999999887 468999999998754 56889999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC--ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
|++||.||+.+-..+. ..++++.+++++|+|++++|.+ +.+++ +++|||||+||+.+||||+++|+||+|
T Consensus 88 Ph~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 88 PHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred CCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCCCeEee
Confidence 9999999998765553 3456777888999999999975 77777 568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||++.|||-++..+++.++++.++ |+|||++|||.+ +.+..+|++.+|+ +|+++-.+++.
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q~~~P~ 221 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQYDTPD 221 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEEeCCHH
Confidence 9999999999999999999999755 999999999986 6888999999997 57887777643
No 54
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-42 Score=353.07 Aligned_cols=218 Identities=29% Similarity=0.395 Sum_probs=185.7
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~ 951 (1119)
+++++|+||||+|++||+++|+|+|||||||||++|.|+.. +..|+|.++|.++.. ..+++.+||++|++.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 56789999999999999999999999999999999999766 458999999976532 3457789999999999
Q ss_pred CCCCCHHHHHHHHHH-----hhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001228 952 SPYVTVYESLLYSAW-----LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~-----l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 1026 (1119)
.+.++|.+|++.+.. ++.......++.+..+-++|+.+|+.+.+-+.. ++|||||+|||+|||||+++|+
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccCCcchhHHHHHHHHHhcCCC
Confidence 999999999987642 222223445566677889999999988877764 4799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC-ChHHHHHHhh
Q 001228 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH-ESHKLIEYFE 1104 (1119)
Q Consensus 1027 illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~-~~~~l~~~f~ 1104 (1119)
||+.|||+++|||.+++.||+.|+++.+ .|.|||++.|+.++ ..++|||++-|+ .|+|+|+||..+ +.+.+.+.|.
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~-~G~ivfDg~~~el~~~~~~~iYg 245 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK-AGRIVFDGPASELTDEALDEIYG 245 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec-CCcEEEeCChhhhhHHHHHHHhc
Confidence 9999999999999999999999999974 59999999999764 567899999997 589999999865 3344666666
No 55
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-42 Score=380.57 Aligned_cols=217 Identities=29% Similarity=0.414 Sum_probs=194.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc-ceEEEeccCCCCCCCCCHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.+++...++ |.+|+|+|+..+||+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999997 99999999999987764 78999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
||.|+.+.++.. . .+...+++++.+.|+|++..|++... ||
T Consensus 95 Niaf~Lk~~~~~--------------------k--------------~ei~~rV~eva~~L~l~~lL~r~P~~-----LS 135 (338)
T COG3839 95 NIAFGLKLRGVP--------------------K--------------AEIDKRVKEVAKLLGLEHLLNRKPLQ-----LS 135 (338)
T ss_pred HhhhhhhhCCCc--------------------h--------------HHHHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 999998776431 1 11234678899999999999999876 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||++||||+.+|+++|||||+|.||+..+.++...++++.+..+.|+|..+|. ..|+..++|+|.+|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHD-q~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD-QVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCC-HHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999999988888777777654 569999999999999999999
Q ss_pred EcChhHHHHHHHhcCCCCCCCCChhHHHH
Q 001228 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (1119)
Q Consensus 425 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (1119)
.|++.++ |..|.+.-+|.|+-
T Consensus 215 ~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred cCChHHH--------hhCccchhhhhhcC
Confidence 9999998 44577777777764
No 56
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5.2e-41 Score=413.83 Aligned_cols=255 Identities=33% Similarity=0.598 Sum_probs=216.0
Q ss_pred CceeEEeccceeeeccc----------------cccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 852 PLSLTFDNMSYFVDMPA----------------EMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~----------------~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+..+.|.++.|.++... ..++..+.++++.+|+|||+++++||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 56789999999876432 12233445566789999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc
Q 001228 916 RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995 (1119)
Q Consensus 916 ~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 995 (1119)
+..++..+|+|.+||.+... ..++.+||++|++.+++.+||+|++.|.+.++.+.....+++.+.++++++.++|.+..
T Consensus 117 ~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 87644468999999988653 33466999999999999999999999987766443444455667789999999999988
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhc
Q 001228 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1075 (1119)
Q Consensus 996 ~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1075 (1119)
|..+|...+.+||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||++.++.+.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 88877666778999999999999999999999999999999999999999999999988899999999999866889999
Q ss_pred eEeEEecCcEEEEecCCCCChHHHHHHhhhhcCCCccCCC
Q 001228 1076 ELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPALSV 1115 (1119)
Q Consensus 1076 ~~l~l~~gG~v~~~g~~~~~~~~l~~~f~~~i~g~~~~~~ 1115 (1119)
++++|. +|++++.|+. +++.+||+ ++ |.+ ||+
T Consensus 276 ~iilL~-~G~iv~~G~~----~~~~~~f~-~~-G~~-~P~ 307 (659)
T PLN03211 276 SVLVLS-EGRCLFFGKG----SDAMAYFE-SV-GFS-PSF 307 (659)
T ss_pred eEEEec-CCcEEEECCH----HHHHHHHH-HC-CCC-CCC
Confidence 999997 4799999985 57999999 66 443 443
No 57
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-42 Score=343.30 Aligned_cols=213 Identities=30% Similarity=0.394 Sum_probs=189.4
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC--hhhhcceEEEEccCCCCCCCCCHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN--QETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~--~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
++++||||+++.||++||+|+|||||||+|++|+++.. +.+|.|.++|.+.. ....++.+|.++.+..++..+|++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 49999999999999999999999999999999999877 45899999999864 345678999999888899999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.|.+.+. +....+.+++++++.+.++|.++.|+.++ +||.|||||++|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999999876 44566777889999999999999999865 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC-----ChHHHHHHhhh
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH-----ESHKLIEYFEV 1105 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~-----~~~~l~~~f~~ 1105 (1119)
..+...+.+.++++..+|++||++||.++ ++...||+++++.+ |++++.|+... ..+++.+.|-.
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~~l~~r~~~~~le~~f~~ 235 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIEALDARTVLRNLEEIFAF 235 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHHHHHHHHhhcCHHHHHHH
Confidence 99999999999999988999999999985 67779999999975 78999998653 23346666653
No 58
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-41 Score=361.16 Aligned_cols=224 Identities=27% Similarity=0.365 Sum_probs=195.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDL 255 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~ 255 (1119)
...++|+|||+.|++|++.+|+|+||||||||++++.++-.|+ +|+|.++|+++.... .++.||+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999997 999999998876654 2578999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
++...||.||+.|..+..+.. + .+.+.++.++++.+||++.+|.+.
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------k------------------------~ei~~RV~elLelVgL~dk~~~yP 139 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------K------------------------AEIKQRVAELLELVGLSDKADRYP 139 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhccCc
Confidence 999999999999987765421 1 123446788999999999999998
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
.+ |||||||||+|||||+.+|+|||+|||||+|||.|+..|.+.|+++.+++|.|+++..|+. .-+-++||+|.
T Consensus 140 ~q-----LSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVa 213 (339)
T COG1135 140 AQ-----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVA 213 (339)
T ss_pred hh-----cCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhhe
Confidence 87 9999999999999999999999999999999999999999999999999999988888775 46788999999
Q ss_pred EEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhc
Q 001228 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~ 456 (1119)
+|++|+++++|+..++ |..|.+.-.-.|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999887 34466655566665544
No 59
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.6e-41 Score=353.38 Aligned_cols=193 Identities=30% Similarity=0.462 Sum_probs=167.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhh-cceEEEEccCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETF-ARVSGYCEQNDIHS 952 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~-~~~~gy~~q~~~~~ 952 (1119)
..+|++|||+|++||+++|||||||||||||++|.|...+ .+|.+.++|.++.. ..+ ++.+||++|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998774 58999999976532 223 35699999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccc-cccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND-SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
|.+||.||+.++..+.... .....+.++++++.+||.+..+ +. +.+|||||||||+|||||+.+|+|||.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 9999999999877654322 2245667889999999986665 54 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
|||.+||.++.+.|+++++++.++ |+|||++|||+ ++...|||++.|.+ |+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999755 99999999996 57889999999986 55
No 60
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=380.49 Aligned_cols=223 Identities=29% Similarity=0.418 Sum_probs=198.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (1119)
...+|+|+|+.|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+..+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 567999999999999999999999999999999999999998 9999999999998766 578999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|+.+.+... ++. +...+++++++.++|++.++.++.+
T Consensus 94 V~~NVafGLk~~~~~-------------------~~~--------------~i~~rv~e~L~lV~L~~~~~R~p~q---- 136 (352)
T COG3842 94 VEENVAFGLKVRKKL-------------------KKA--------------EIKARVEEALELVGLEGFADRKPHQ---- 136 (352)
T ss_pred HHHHhhhhhhhcCCC-------------------CHH--------------HHHHHHHHHHHHcCchhhhhhChhh----
Confidence 999999987743211 001 1234578899999999999999887
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||+|||++||||+.+|++||||||.|+||..-+.++...|+++.+..|.|.|..+|+ ..|.+.++|+|.+|++|+
T Consensus 137 -LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHD-qeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 137 -LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD-QEEALAMSDRIAVMNDGR 214 (352)
T ss_pred -hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECC-HHHHhhhccceEEccCCc
Confidence 999999999999999999999999999999999999999999999999888888877655 569999999999999999
Q ss_pred EEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhh
Q 001228 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (1119)
Q Consensus 422 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (1119)
|...|+++++ |..|...-+|+|+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 5668888888888654
No 61
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=354.91 Aligned_cols=207 Identities=28% Similarity=0.437 Sum_probs=176.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccC---CCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH---DLHHGEMT 261 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~---d~~~~~lT 261 (1119)
++|+|||+.+++|++++|+||||||||||+|+|.|.++|. +|+|.++|.+......+..||||||. |+-|| +|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-IT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cC
Confidence 4999999999999999999999999999999999999997 99999999988776666789999995 45566 79
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+|.+..+..-+ ........+ +....++++|+.+|+.+.+|..+|+
T Consensus 94 V~d~V~~g~~~~-----~g~~~~~~~-------------------------~d~~~v~~aL~~Vgm~~~~~r~i~~---- 139 (254)
T COG1121 94 VKDVVLLGRYGK-----KGWFRRLNK-------------------------KDKEKVDEALERVGMEDLRDRQIGE---- 139 (254)
T ss_pred HHHHHHccCccc-----ccccccccH-------------------------HHHHHHHHHHHHcCchhhhCCcccc----
Confidence 999998752211 011111111 1134578899999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||+|||-|||||+.+|++|+|||||+|+|+.++..|.+.|+++.++ |+|++++.| ....+.++||+|++|+ ++
T Consensus 140 -LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtH-DL~~v~~~~D~vi~Ln-~~ 215 (254)
T COG1121 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTH-DLGLVMAYFDRVICLN-RH 215 (254)
T ss_pred -cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeC-CcHHhHhhCCEEEEEc-Ce
Confidence 9999999999999999999999999999999999999999999999987 888777755 4568999999999996 67
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+++++..
T Consensus 216 ~~~~G~~~~~~~ 227 (254)
T COG1121 216 LIASGPPEEVLT 227 (254)
T ss_pred eEeccChhhccC
Confidence 889999988753
No 62
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3e-41 Score=361.65 Aligned_cols=211 Identities=29% Similarity=0.440 Sum_probs=183.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1119)
+++||+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++..... .+.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 467999999999999999999999999999999999999997 9999999999877654 4789999999988889
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+|.+.++..-.. ......+ .+....++..|+.+|+.+.+++.+.+
T Consensus 91 ~tV~d~V~~GR~p~~-----~~~~~~~-------------------------~~D~~~v~~aL~~~~~~~la~r~~~~-- 138 (258)
T COG1120 91 LTVYELVLLGRYPHL-----GLFGRPS-------------------------KEDEEIVEEALELLGLEHLADRPVDE-- 138 (258)
T ss_pred cEEeehHhhcCCccc-----ccccCCC-------------------------HhHHHHHHHHHHHhCcHHHhcCcccc--
Confidence 999999988643210 0000000 01122467889999999999999988
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||.||+||+.+|++||||||||+||...+.++++.++++++..|.|+|+++|.+ .....+||++++|++
T Consensus 139 ---LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~ 214 (258)
T COG1120 139 ---LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKD 214 (258)
T ss_pred ---cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999988888988888765 578899999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|+++.+|++++++
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999998875
No 63
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-41 Score=347.23 Aligned_cols=208 Identities=27% Similarity=0.394 Sum_probs=185.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 259 (1119)
.+.+++|+|++|++||+++++|||||||||+|++|.+++.|+ +|+|.+||+++.+.. .++.+|||-|.-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 567999999999999999999999999999999999999997 999999999987654 46899999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc--cccccccC
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGD 337 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~ 337 (1119)
+||.||+.+--.+.+-. .++...+++++|+.+||+. ..+.+..+
T Consensus 90 ~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~~~~~RyP~e 135 (309)
T COG1125 90 LTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPSEYADRYPHE 135 (309)
T ss_pred ccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHHHHhhcCchh
Confidence 99999998865544321 0123346789999999974 67777766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||+|||.+||||+.+|+|+|||||+++|||.++.++.+.++++.+..++|+|+.+| ...|.+.++|+|++|
T Consensus 136 -----LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH-DidEA~kLadri~vm 209 (309)
T COG1125 136 -----LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH-DIDEALKLADRIAVM 209 (309)
T ss_pred -----cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec-CHHHHHhhhceEEEe
Confidence 99999999999999999999999999999999999999999999999989999888765 567999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|+++..+++++++.
T Consensus 210 ~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 210 DAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCeEEEeCCHHHHHh
Confidence 9999999999999874
No 64
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-41 Score=357.14 Aligned_cols=207 Identities=30% Similarity=0.458 Sum_probs=186.0
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc---cCCh-hhhcceEEEEccCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKNQ-ETFARVSGYCEQNDIHS 952 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~---~~~~-~~~~~~~gy~~q~~~~~ 952 (1119)
.+...+++|||++|+.||++||.|||||||||||++|+|+.+ +..|.|.++|. +.++ ....|++||++|+..+|
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 345678999999999999999999999999999999999987 45899999998 5544 34467899999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
++|||.||+.|+...+ ...++..+.+.++.++|++++|+++.+++ +..||||||||+++||||+.+|++|+|||
T Consensus 90 ~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 90 PHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred ccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecC
Confidence 9999999999998776 33455667788899999999999999998 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+++||+.-++.+.+.|+++.++ |.|+|+||||++ +..+.+|++++|.+ |+|+..|+..
T Consensus 164 Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 164 PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 99999999999999999999876 999999999985 78999999999975 8998888864
No 65
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-41 Score=355.36 Aligned_cols=224 Identities=29% Similarity=0.470 Sum_probs=190.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc---cCCCCcc-cceEEEeccCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH---ELNEFVP-QRTCAYISQHDLHH 257 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~~~~~-~~~~~yv~Q~d~~~ 257 (1119)
....+++|||+.|+.||+++|+|||||||||||++|||+..|+ +|.|.+||. +.+.... .|.||||+|+..+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 3456899999999999999999999999999999999999998 999999999 5444333 47899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
++|||.+||.|+.+++.. .|+ ..+.+.+++++|+.+.|++.++.+.-+
T Consensus 90 ~HmtVa~NIAFGl~~~~~-------------------~p~-------------~~~~r~rv~elL~lvqL~~la~ryP~Q 137 (345)
T COG1118 90 PHMTVADNIAFGLKVRKE-------------------RPS-------------EAEIRARVEELLRLVQLEGLADRYPAQ 137 (345)
T ss_pred ccchHHhhhhhccccccc-------------------CCC-------------hhhHHHHHHHHHHHhcccchhhcCchh
Confidence 999999999999876511 010 011234577889999999999888866
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||++||||+..|++||||||+++||++.+.++-+.|+++.+..+.|+++++|. ..|++++||+|++|
T Consensus 138 -----LSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD-~eea~~ladrvvvl 211 (345)
T COG1118 138 -----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHD-QEEALELADRVVVL 211 (345)
T ss_pred -----cChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCC-HHHHHhhcceEEEe
Confidence 999999999999999999999999999999999999999999999988878888777655 56999999999999
Q ss_pred cCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHh
Q 001228 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~ 454 (1119)
++|+|...|+++++- ..|...-.+.|+-+
T Consensus 212 ~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 212 NQGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred cCCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 999999999999984 34555555555543
No 66
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.8e-40 Score=329.26 Aligned_cols=200 Identities=28% Similarity=0.378 Sum_probs=173.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+||||+|++||++-|+|||||||||||++|.+... +..|.|.++|+++.. .-++|+||+|+|+..+.+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 569999999999999999999999999999999999765 458999999998643 235788999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..||+||+.|...+.. ....+.++.+.++|+.+||.+..+.. +..||||||||++||||++.+|++|+.|||
T Consensus 93 ~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 93 DRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred cchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 9999999999877653 34566777899999999999887776 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhc-eEeEEecCcEEEEecCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~~l~l~~gG~v~~~g~~ 1092 (1119)
|.+|||..+..||+++.++...|.|||+.|||. ++...+. +++.| +.|+++.+...
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l-~~Grl~~d~~~ 221 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLAL-EDGRLVRDESR 221 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEE-eCCEEEecccc
Confidence 999999999999999999988899999999984 5565554 55556 46898876543
No 67
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=370.60 Aligned_cols=208 Identities=27% Similarity=0.400 Sum_probs=186.1
Q ss_pred cccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCC
Q 001228 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 875 ~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~ 953 (1119)
+.++...+|+|||++|+.||+++|+|||||||||||++|||+.. +.+|+|.|+|.+.+. ....|.+++|+|+..++|
T Consensus 11 K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyP 88 (338)
T COG3839 11 KSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYP 88 (338)
T ss_pred EEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccC
Confidence 33444339999999999999999999999999999999999877 568999999998765 445688999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
++||+||+.|+..++. ...++.++++.++.+.+++.++.++. +.+|||||||||+|||||+++|++++||||
T Consensus 89 hmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP 160 (338)
T COG3839 89 HMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEP 160 (338)
T ss_pred CCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecCc
Confidence 9999999999987763 45667788899999999999999998 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
.|+||++.+..+...|+++.++ |.|+|.+|||. .+....+|++.+|. +|++...|++.+
T Consensus 161 lSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~-~G~i~Q~g~p~e 220 (338)
T COG3839 161 LSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMN-DGRIQQVGTPLE 220 (338)
T ss_pred hhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEe-CCeeeecCChHH
Confidence 9999999999999999998755 89999999997 57888999999997 689999888654
No 68
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-40 Score=341.93 Aligned_cols=210 Identities=24% Similarity=0.385 Sum_probs=181.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDL 255 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~ 255 (1119)
..+.||+|||+.|++||+++|||||||||||||++|.|+++|+ +|+|.++|+++.... .++.+|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 3567999999999999999999999999999999999999998 999999999986553 2467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc-cccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~ 334 (1119)
+|..|||.||+.|-.+-... .|+..+ +..+..-|+..||... +|.+
T Consensus 96 LFssltV~eNVafplre~~~-------------------lp~~~i--------------~~lv~~KL~~VGL~~~~~~~~ 142 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK-------------------LPESLI--------------RELVLMKLELVGLRGAAADLY 142 (263)
T ss_pred cccccchhHhhheehHhhcc-------------------CCHHHH--------------HHHHHHHHHhcCCChhhhhhC
Confidence 99999999999996542211 111111 1234456788999876 7877
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..+ ||||++||+++|||++.+|+++|+||||+||||.++..|.++++++.+.++.|+++.+|+ .++++..||++
T Consensus 143 PsE-----LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHD-l~s~~~i~Drv 216 (263)
T COG1127 143 PSE-----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIADRV 216 (263)
T ss_pred chh-----hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECC-hHHHHhhhceE
Confidence 777 999999999999999999999999999999999999999999999999889888887765 56999999999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|.+|+|+++|+++++.+
T Consensus 217 ~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 217 AVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999864
No 69
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.3e-41 Score=336.68 Aligned_cols=224 Identities=25% Similarity=0.340 Sum_probs=193.1
Q ss_pred cccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhh----hcceEEEEc
Q 001228 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQET----FARVSGYCE 946 (1119)
Q Consensus 871 ~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~----~~~~~gy~~ 946 (1119)
+++.++|++++++++||+++++||++||+|||||||||.+.++.|+.. +.+|.|.++|.++.... .+..+||+|
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLp 85 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLP 85 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCccccc
Confidence 445567788899999999999999999999999999999999999876 45899999999876533 234599999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001228 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026 (1119)
Q Consensus 947 q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 1026 (1119)
|++..|..+||+||+......+.. +....+++..++++|+.|++.+++++.. ..||||||+|+.|||||+.+|+
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCC
Confidence 999999999999999877666532 3333456667889999999999998874 3699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1027 illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
.++||||++|+||-+...|+++++.+.+.|..|++|-|+.. ++...|||.+++.+ |++.+.|...+ +.+.+.++|-
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ei~~n~~Vr~~YL 237 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEEIVNNEDVRRVYL 237 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHHHhcChhhhhhcc
Confidence 99999999999999999999999999999999999999986 78899999999975 89999998754 3345555553
No 70
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-40 Score=335.68 Aligned_cols=218 Identities=24% Similarity=0.356 Sum_probs=183.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC---CCCeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~---~~g~~~G~i~i~g 930 (1119)
.++++|++.++ +.+++|+|||+.|++++++||||||||||||||++|.+.. ++-.++|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 35666766554 4567999999999999999999999999999999999742 3346789999999
Q ss_pred ccCC-----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCC
Q 001228 931 YPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGV 1004 (1119)
Q Consensus 931 ~~~~-----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~ 1004 (1119)
.++. ...+|+.+|.|+|.|..|| +|++||+.|+..+....+ ++-++.+++.|+...|++- .|++-.. .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 8763 3468899999999999999 999999999988765433 6677889999999988653 3333221 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
.+|||||||||||||||+-+|+|||||||||+|||.+...|-++|.+++ +.-|||+|||.+. ......|+..++.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 4699999999999999999999999999999999999999999999998 4699999999875 56677899999975 7
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
++++.|+..
T Consensus 225 ~LvE~g~T~ 233 (253)
T COG1117 225 ELVEFGPTD 233 (253)
T ss_pred EEEEEcCHH
Confidence 999999864
No 71
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=333.31 Aligned_cols=212 Identities=31% Similarity=0.369 Sum_probs=185.4
Q ss_pred CCCcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCC
Q 001228 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDL 255 (1119)
Q Consensus 178 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~ 255 (1119)
++++...++++||||.++.|++++|+|||||||||+|++|++++.|+ +|+|++||.+.... ..++.+|.++.+--
T Consensus 9 K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~g 85 (245)
T COG4555 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERG 85 (245)
T ss_pred hhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcC
Confidence 44444455899999999999999999999999999999999999998 99999999886443 24678999998888
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
++..||++|||.|.+++.+. ++. +.+.+++.+.+.|+|.+|.|+.+
T Consensus 86 lY~RlT~rEnl~~Fa~L~~l----------~~~------------------------~~kari~~l~k~l~l~~~~~rRv 131 (245)
T COG4555 86 LYARLTARENLKYFARLNGL----------SRK------------------------EIKARIAELSKRLQLLEYLDRRV 131 (245)
T ss_pred hhhhhhHHHHHHHHHHHhhh----------hhh------------------------HHHHHHHHHHHHhChHHHHHHHH
Confidence 99999999999999887542 111 12345788999999999999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
|+ +|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++.. .|+++|.+. |..+|+..+||+|+
T Consensus 132 ~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSS-H~m~EvealCDrvi 204 (245)
T COG4555 132 GE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSS-HIMQEVEALCDRVI 204 (245)
T ss_pred hh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEec-ccHHHHHHhhheEE
Confidence 98 999999999999999999999999999999999999999999999865 477777775 56789999999999
Q ss_pred EEcCCeEEEEcChhHHHH
Q 001228 416 LLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1119)
+|++|++++.|+.+++..
T Consensus 205 vlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 205 VLHKGEVVLEGSIEALDA 222 (245)
T ss_pred EEecCcEEEcCCHHHHHH
Confidence 999999999999988754
No 72
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=8.3e-40 Score=403.70 Aligned_cols=230 Identities=41% Similarity=0.726 Sum_probs=204.3
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
++.+|+|||++|++||+++|+|||||||||||++|+|+.+++ ..+|+|.++|.+.....+++.+|||+|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999986543 3579999999988766677889999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCC-CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
+||+.|++.++.+.....+++.+.++++++.++|.+..|..+|.++ ..+||||||||++||+||+.+|+||||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999988766555566677789999999999999999988643 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChHHHHHHhhhhcCCCccCCCC
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPALSVD 1116 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~~l~~~f~~~i~g~~~~~~~ 1116 (1119)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|. +|+++|.|+. +++.+||+ .+ |.+ ||++
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~-~~-g~~-~p~~ 268 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFS-DL-GHP-CPEN 268 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHH-Hc-CCC-CCCC
Confidence 999999999999999988899999999999878899999999997 5899999986 56889999 55 433 5544
No 73
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-40 Score=339.92 Aligned_cols=219 Identities=26% Similarity=0.348 Sum_probs=184.7
Q ss_pred CcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccC
Q 001228 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQH 253 (1119)
Q Consensus 180 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~ 253 (1119)
++..+++|+|||+.|++||+++|+|||||||||||++|.|..+++ +|+|.+||.++.... .++.+||++|+
T Consensus 13 yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~ 89 (258)
T COG3638 13 YPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQ 89 (258)
T ss_pred cCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEecc
Confidence 335578999999999999999999999999999999999999987 999999998876543 24679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc
Q 001228 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1119)
Q Consensus 254 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 333 (1119)
..+.+.+||.+|+..+..-+. ..++. -.+..+..| +...-..|+.+|+.+.+-+
T Consensus 90 ~nLv~r~sv~~NVl~grl~~~--s~~~s---------lfglfsk~d---------------k~~Al~aLervgi~~~A~q 143 (258)
T COG3638 90 FNLVPRLSVLENVLLGRLGYT--STWRS---------LFGLFSKED---------------KAQALDALERVGILDKAYQ 143 (258)
T ss_pred CCcccccHHHHHHHhhhcccc--hHHHH---------HhCCCCHHH---------------HHHHHHHHHHcCcHHHHHH
Confidence 999999999999987643211 11111 112222111 1223457899999999999
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
+.++ |||||+|||+|||||+.+|+++|-|||+++|||.++.++++.|+++++..|.|+|+.+||- .-+.++|||
T Consensus 144 ra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~R 217 (258)
T COG3638 144 RAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADR 217 (258)
T ss_pred Hhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhh
Confidence 9988 9999999999999999999999999999999999999999999999999899999998875 467899999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001228 414 IILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~ 433 (1119)
|+-|++|+++|.||++++.+
T Consensus 218 iigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 218 IIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred heEecCCcEEEeCChhhhhH
Confidence 99999999999999988754
No 74
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-40 Score=345.88 Aligned_cols=192 Identities=25% Similarity=0.342 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
..+|+|+|++|.+||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 57999999999999999999999999999999999999997 999999999883 3566899999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.|+....+... . +....++..|+.+||.+..|....+ |
T Consensus 91 ~NV~l~l~~~~~~~----------~------------------------e~~~~a~~~L~~VgL~~~~~~~P~q-----L 131 (248)
T COG1116 91 DNVALGLELRGKSK----------A------------------------EARERAKELLELVGLAGFEDKYPHQ-----L 131 (248)
T ss_pred hhheehhhccccch----------H------------------------hHHHHHHHHHHHcCCcchhhcCccc-----c
Confidence 99999877654210 0 1122467899999999999999877 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+..++|+++++|. -.|...++|+|++|+++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd-i~EAv~LsdRivvl~~~ 207 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD-VDEAVYLADRVVVLSNR 207 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC-HHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999999999988878888877655 56889999999999983
No 75
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-39 Score=341.68 Aligned_cols=195 Identities=26% Similarity=0.405 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
.++|++||+.|++||+++|+|||||||||||++|+|...|+ +|.|.++|.+++.... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999996 9999999988875542 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc-ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD-TMV 335 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-t~v 335 (1119)
+|++||+||+.+.....+.... ......+.+++.+||++..+ ..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCc
Confidence 9999999999986655432210 01223567899999997766 778
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
.+ |||||||||+|||||+.+|+++|.||||..||+.++..|++.++++++..|+|+|+++|.| ++...|||++
T Consensus 141 ~e-----LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i 213 (226)
T COG1136 141 SE-----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI 213 (226)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEE
Confidence 77 9999999999999999999999999999999999999999999999988888999998875 6889999999
Q ss_pred EEcCCeE
Q 001228 416 LLSEGQI 422 (1119)
Q Consensus 416 lL~~G~i 422 (1119)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999984
No 76
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-40 Score=367.96 Aligned_cols=210 Identities=26% Similarity=0.379 Sum_probs=186.1
Q ss_pred ccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCC
Q 001228 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHS 952 (1119)
Q Consensus 874 ~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~ 952 (1119)
++.|++..+|+|||++|++||+++|+|||||||||||++|||... +.+|+|.++|.++... ..+|.+|+|+|+..+|
T Consensus 12 ~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALF 89 (352)
T COG3842 12 SKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQSYALF 89 (352)
T ss_pred eeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeecCcccC
Confidence 345566789999999999999999999999999999999999887 4589999999988653 3467899999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
|++||+||+.|+..++. ....++.++++.+++++++|.++.++. +.+||||||||++|||||+.+|++|||||
T Consensus 90 PHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 90 PHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred CCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 99999999999987443 334456778899999999999999888 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
|.|+||..-+..++..++++.+ .|.|.|++|||.+ +....+|++.+|. +|+|+-.|++.+
T Consensus 163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~gtP~e 223 (352)
T COG3842 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQVGTPEE 223 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeecCCHHH
Confidence 9999999999999999999874 4999999999975 7788899999997 489998888653
No 77
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2e-39 Score=366.65 Aligned_cols=215 Identities=28% Similarity=0.393 Sum_probs=183.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|++..+ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~i~i~~l~k~~-------------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRY-------------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEE-------------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 46677766433 34569999999999999999999999999999999999876 4589999999886
Q ss_pred Ch--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
.. ...++.+||++|++.+++.+||+||+.|.+.++. ....+....++++++.++|.+..++.+ .+||+||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 3456789999999999999999999998765532 223334456789999999988777764 4799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999985 57778999999975 79999987
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 222 ~~ 223 (306)
T PRK13537 222 PH 223 (306)
T ss_pred HH
Confidence 53
No 78
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.7e-40 Score=335.65 Aligned_cols=230 Identities=24% Similarity=0.371 Sum_probs=200.4
Q ss_pred cccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCC
Q 001228 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI 950 (1119)
Q Consensus 871 ~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~ 950 (1119)
.+++++++++.+++||||.++||+++|++|+|||||||++++|.|... +.+|.|.++|.++++. ...+|||+|.+.-
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPEERG 82 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPEERG 82 (300)
T ss_pred ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChhhhc
Confidence 344566778899999999999999999999999999999999999887 4689999999988654 4567999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+++.+||.|.|.|.+.+. .++.++....+..+|+.+++.....+. +.+||.|++|++.+..+++++|++++|
T Consensus 83 Ly~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 83 LYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred cCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 999999999999999886 466777788899999999998877776 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChH-----------HH
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESH-----------KL 1099 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~-----------~l 1099 (1119)
|||+|||||.+.+.+.+.+.+++++|.|||+++|+++ ++.+.||++++|++ |+.|..|+...-+. +.
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~~ir~~~Gkk~~~ies~~ 232 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIESDL 232 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHHHHHHhcCCceEEEeccC
Confidence 9999999999999999999999999999999999986 78999999999976 77888888643111 11
Q ss_pred H-HHhhhhcCCCccCC
Q 001228 1100 I-EYFEVSIPFFPALS 1114 (1119)
Q Consensus 1100 ~-~~f~~~i~g~~~~~ 1114 (1119)
. +-.. .||||-++.
T Consensus 233 s~eeL~-~ipgi~~~~ 247 (300)
T COG4152 233 SLEELA-NIPGILKIT 247 (300)
T ss_pred chHHHh-cCCCceeee
Confidence 1 2245 899998877
No 79
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=8.9e-39 Score=364.19 Aligned_cols=202 Identities=26% Similarity=0.323 Sum_probs=175.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh------hhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE------TFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~------~~~~~~gy~~q~~~~~~ 953 (1119)
..+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++.+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 469999999999999999999999999999999999876 4589999999876431 23568999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..||+||+.|...... ....+..+.+.++++.++|.+..++.+ ..||||||||++|||||+.+|+||+||||
T Consensus 96 ~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 96 SRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred cCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999999998765431 234455667899999999998888774 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|+ +|++++.|+..
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv~~g~~~ 226 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELIEQGTVS 226 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999999765 999999999975 4667899999997 48999998853
No 80
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.6e-39 Score=317.10 Aligned_cols=201 Identities=24% Similarity=0.397 Sum_probs=179.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCHHHHHH
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
.++..|++||++||+||||||||||||.|||+..|. +|+|.+||++.+...+ +|.++.++|+..+|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 568899999999999999999999999999999986 9999999999887655 578999999999999999999998
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1119)
++.. ++-+. .. +....++.++...||..+.+...++ |||||
T Consensus 94 LGl~---P~LkL------~a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGq 134 (231)
T COG3840 94 LGLS---PGLKL------NA-------------------------EQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQ 134 (231)
T ss_pred ccCC---ccccc------CH-------------------------HHHHHHHHHHHHhChhhHhhhCccc-----cCchH
Confidence 8642 11111 11 1123467789999999999999988 99999
Q ss_pred HHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcC
Q 001228 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~ 427 (1119)
||||++||+|+.+.+|++||||+|+|||.-+.+....+.+++.+.+.|+++.+|||. ++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999986 8889999999999999999999
Q ss_pred hhHHH
Q 001228 428 RDNVL 432 (1119)
Q Consensus 428 ~~~~~ 432 (1119)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
No 81
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-39 Score=367.77 Aligned_cols=206 Identities=26% Similarity=0.369 Sum_probs=180.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.+|||+|++.+||++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 46999999999999999999999999999999999999987 9999999998865443 4689999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 94 ~eNi~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~----- 134 (356)
T PRK11650 94 RENMAYGLKIRGMP----------KA------------------------EIEERVAEAARILELEPLLDRKPRE----- 134 (356)
T ss_pred HHHHHhHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhhCChhh-----
Confidence 99999975532210 00 0112457789999999999988877
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.+..+.|+|+++|++ .++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999876688888887765 589999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999998874
No 82
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=347.72 Aligned_cols=203 Identities=26% Similarity=0.380 Sum_probs=172.4
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHS 952 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~ 952 (1119)
+..+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 3469999999999999999999999999999999999876 358999999987532 23456799999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
+.+||.||+.+...... ....+...+.+.++++.+++.+..++. +.+||||||||++|||||+.+|+||||||
T Consensus 90 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ia~al~~~p~llllDE 162 (235)
T cd03261 90 DSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKKRVALARALALDPELLLYDE 162 (235)
T ss_pred CCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999988643221 122334455688899999998777665 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 99999999999999999999764 899999999975 46678999999975 789988874
No 83
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.2e-38 Score=359.64 Aligned_cols=206 Identities=25% Similarity=0.341 Sum_probs=179.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999987 999999999886543 245799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.|.....+.. + . +....+.++++.+||++..|..+++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~----------~--------------~~~~~v~e~l~~vgL~~~~~~~~~~ 140 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTP----------K----------D--------------EIKRKVTELLALVGLGDKHDSYPSN 140 (343)
T ss_pred ccCcHHHHHHHHHHHcCCC----------H----------H--------------HHHHHHHHHHHHcCCchhhhCChhh
Confidence 9999999998865432210 0 0 0112356789999999988888876
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+++|+. ..+.++||+|++|
T Consensus 141 -----LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl 214 (343)
T TIGR02314 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999876688888877664 5788999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
No 84
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.8e-38 Score=359.34 Aligned_cols=204 Identities=27% Similarity=0.392 Sum_probs=176.2
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 34569999999999999999999999999999999999876 458999999987643 23456799999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+||+.+.+.++. .......+.++++++.++|.+..++.+ ..||||||||++||+||+.+|++|||||||+
T Consensus 82 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999998765432 223344556889999999988777764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 209 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTPE 209 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999877999999999975 57778999999975 8999888753
No 85
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.1e-38 Score=361.85 Aligned_cols=215 Identities=27% Similarity=0.375 Sum_probs=182.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|++..+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 41 ~i~i~nl~k~y-------------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSY-------------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 46677766433 34569999999999999999999999999999999999876 4589999999876
Q ss_pred Ch--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
.. ...++.+||++|++.+++.+|+.||+.+.+.++. ....+..+.++++++.++|.+..++.+ .+||+||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 42 3456789999999999999999999987655432 222334456778999999988777764 4799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
|||++||+||+.+|++|||||||+|||+.++..++++|+++.++|+|||++||+++ ++...||++++|.+ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999985 57788999999975 79999987
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 256 ~~ 257 (340)
T PRK13536 256 PH 257 (340)
T ss_pred HH
Confidence 54
No 86
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.1e-38 Score=363.82 Aligned_cols=206 Identities=28% Similarity=0.429 Sum_probs=181.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.++||+|+..+||++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999987 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+.++.. +. +....++++++.+||++..|+.+.+
T Consensus 94 ~eNi~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~l~L~~~~~~~~~~----- 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------RA------------------------EVAERVAELLDLVGLPGSERKYPGQ----- 134 (353)
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCCchhhCChhh-----
Confidence 99999975432110 00 0122467899999999999988876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+..+.|+|+++|++ .++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999877788888887766 589999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+++|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (353)
T TIGR03265 214 EQVGTPQEIY 223 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 87
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=341.91 Aligned_cols=214 Identities=26% Similarity=0.363 Sum_probs=186.3
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|++|+++. +..+|+|+|++|++||.++|+|+||||||||+++|+|... +..|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeecc
Confidence 467787776541 1469999999999999999999999999999999999876 45799999998854
Q ss_pred ----hhhhcceEEEEccCCCC-CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 935 ----QETFARVSGYCEQNDIH-SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ----~~~~~~~~gy~~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
...+++.+|||+|+|.. +..-||.|.+.|+.... ..+.++.+++++++++.+++.++.++. +.+|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 45678899999999865 45679999999986533 445566788899999999999998887 458999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
||||||+||.+|+.+|++|+|||||||||+.+++.+++.++++.++ |.|||++|||.+ .+...+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 699999999975 57777999999975 89999
Q ss_pred ecCC
Q 001228 1089 AGPL 1092 (1119)
Q Consensus 1089 ~g~~ 1092 (1119)
+|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9974
No 88
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=364.48 Aligned_cols=203 Identities=26% Similarity=0.364 Sum_probs=177.4
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.++|.+||
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 3469999999999999999999999999999999999876 468999999987643 2234789999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.|+...+ .....+..+.++++++.++|.++.++.+ .+|||||||||+|||||+.+|+|||||||||+|
T Consensus 94 ~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~L 165 (356)
T PRK11650 94 RENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNL 165 (356)
T ss_pred HHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999986433 2334455567899999999998888874 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.+++.+.+.|+++.++ |.|+|++||+++ +....+|++++|. +|+++..|+..
T Consensus 166 D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~~~ 220 (356)
T PRK11650 166 DAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGTPV 220 (356)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECCHH
Confidence 999999999999998765 999999999975 6788899999997 58999998854
No 89
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-38 Score=362.40 Aligned_cols=206 Identities=24% Similarity=0.386 Sum_probs=180.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
..+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|+..+||++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999987 9999999998876544 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+.++... . +....++++++.+||.+..+..+.+
T Consensus 96 ~eNi~~~l~~~~~~~----------~------------------------~~~~~v~~~l~~~gl~~~~~r~~~~----- 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------E------------------------ERKQRVKEALELVDLAGFEDRYVDQ----- 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 999999765432110 0 0122457789999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++||||||++|||+.++.++.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876678888877665 589999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 90
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-39 Score=331.82 Aligned_cols=200 Identities=27% Similarity=0.371 Sum_probs=169.9
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEEccCCC--CCCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQNDI--HSPY 954 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~~q~~~--~~~~ 954 (1119)
.+|+||||+|.+||++||+|+||||||||.++|+|... +..|+|.++|.+.... .+++.+.+|+|+|. +.|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 49999999999999999999999999999999999876 4589999999765432 46788999999986 6789
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
.||++.|.-+.... ...+. .+.+.++++.+||.+ ..++. +.+||||||||+||||||+.+|++||||||
T Consensus 99 ~tv~~~l~Epl~~~---~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 99 RTVGRILSEPLRPH---GLSKS--QQRIAELLDQVGLPPSFLDRR-----PHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred hhHHHHHhhhhccC---CccHH--HHHHHHHHHHcCCCHHHHhcC-----chhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 99999887654431 22222 233899999999965 44554 567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
||+||+..++.|++++.++.++ +.|+|+||||.+ -+...|||+++|++ |++++.++...
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ivE~~~~~~ 228 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQIVEIGPTEE 228 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeEEEeechhh
Confidence 9999999999999999999754 889999999976 46778999999975 89999998654
No 91
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-38 Score=340.50 Aligned_cols=200 Identities=30% Similarity=0.427 Sum_probs=169.0
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 3469999999999999999999999999999999999865 458999999987643 2234579999999988889999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.+...... .......+.++++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L 161 (213)
T cd03259 90 AENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSAL 161 (213)
T ss_pred HHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999987643321 22233445678999999998777665 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1038 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+.++..+++.|+++++ .|+|||++||+++ ++...||++++|.+ |++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 162 DAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999876 4899999999975 46778999999975 7887654
No 92
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.8e-38 Score=360.52 Aligned_cols=206 Identities=22% Similarity=0.367 Sum_probs=179.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcc--eEEEECCccCCCCcc-cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS--GKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~--G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 260 (1119)
..+|+|+|+++++|++++|+|||||||||||++|+|..+|+ + |+|.++|.++....+ ++.++||+|+..+||.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 45999999999999999999999999999999999999987 7 999999998865433 46799999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.|+.+..+.. + . +....++++++.+||++..|+.+++
T Consensus 95 tv~enl~~~l~~~~~~----------~----------~--------------~~~~~v~~~l~~~gL~~~~~~~~~~--- 137 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMP----------K----------A--------------DIAERVADALKLVGLGDAAAHLPAQ--- 137 (362)
T ss_pred cHHHHHHHHHHHcCCC----------H----------H--------------HHHHHHHHHHHhcCCCchhhCChhh---
Confidence 9999999976533210 0 0 0112457789999999999998877
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~-~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +.|+|+++|++ .++..++|+|++|++
T Consensus 138 --LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 138 --LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKD 214 (362)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998765 67877776665 588999999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|+++.+|+++++.
T Consensus 215 G~i~~~g~~~~~~ 227 (362)
T TIGR03258 215 GRLAAHGEPQALY 227 (362)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999884
No 93
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.7e-38 Score=362.78 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=178.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+..+|+||||++++||+++|+|||||||||||++|+|... +.+|+|.++|.+... ...+|.+||++|++.++|.+||
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 3569999999999999999999999999999999999876 468999999987643 2345779999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.|+...+ .....+..+.++++++.++|.++.++. +.+||||||||++|||||+.+|++||||||||+|
T Consensus 94 ~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~L 165 (353)
T TIGR03265 94 ADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQQRVALARALATSPGLLLLDEPLSAL 165 (353)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99999986543 233445566789999999999988877 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.++..+.+.|+++.++ |.|+|++||+++ +....+|++++|++ |+++..|+..
T Consensus 166 D~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~~ 220 (353)
T TIGR03265 166 DARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTPQ 220 (353)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999998765 899999999985 67788999999975 7999998754
No 94
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.2e-38 Score=354.55 Aligned_cols=206 Identities=29% Similarity=0.439 Sum_probs=178.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999875432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|.++..+... . +....++.+++.+||.+..++.+++
T Consensus 97 v~e~l~~~~~~~~~~~--------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 138 (306)
T PRK13537 97 VRENLLVFGRYFGLSA--------------------A--------------AARALVPPLLEFAKLENKADAKVGE---- 138 (306)
T ss_pred HHHHHHHHHHHcCCCH--------------------H--------------HHHHHHHHHHHHcCCchHhcCchhh----
Confidence 9999998665433110 0 0012346788999999999999876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|++++.|+. .++.++||+|++|++|+
T Consensus 139 -LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 139 -LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVIEEGR 215 (306)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999965 477888877665 58999999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
No 95
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=361.69 Aligned_cols=215 Identities=25% Similarity=0.390 Sum_probs=184.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|++..+ ++..+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRF-------------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEE-------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 45677776543 23468999999999999999999999999999999999876 4589999999876
Q ss_pred Chh-hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 934 NQE-TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~~-~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
... ..+|.+||++|++.++|.+||+||+.|+...+. ....+..+.++++++.++|.++.++. +..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 432 234789999999999999999999999865432 33445567789999999999888877 457999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||++|||||+.+|+||||||||+|||+.++..+.+.|+++.++ |.|+|++|||++ +....+|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999985 67788999999975 79999887
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 54
No 96
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.8e-38 Score=360.00 Aligned_cols=208 Identities=22% Similarity=0.326 Sum_probs=180.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1119)
.+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 456999999999999999999999999999999999999986 9999999998875443 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
++|++||+||+.|..+..+... . +....+.++++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPE----------Q------------------------ERKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHhcCCchhhhCCh
Confidence 9999999999998755432110 0 01123567899999998888888
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+..++|+|++.|+. .++..++|+|+
T Consensus 128 ~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~ 201 (363)
T TIGR01186 128 DE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIV 201 (363)
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 87 9999999999999999999999999999999999999999999999776678888877665 57899999999
Q ss_pred EEcCCeEEEEcChhHHHH
Q 001228 416 LLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1119)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999988753
No 97
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-38 Score=340.28 Aligned_cols=200 Identities=27% Similarity=0.424 Sum_probs=171.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
+.+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. .++.++|++|++.+++..|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 469999999999999999999999999999999999865 458999999987642 3567999999998888899999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
|+.+....+. .......+.++++++.+++.+..++.+ ..||||||||++|||||+.+|++|||||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988654331 222334556889999999987766653 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCC
Q 001228 1040 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPL 1092 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~ 1092 (1119)
.++..+++.|+++.+ .|+|||++||+++ ++...||++++|++ +|++++.++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999864 4899999999975 46778999999985 5899888764
No 98
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.7e-38 Score=361.28 Aligned_cols=215 Identities=24% Similarity=0.331 Sum_probs=184.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeE--EEEEECCc
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE--GDIKISGY 931 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~--G~i~i~g~ 931 (1119)
.++++|+++.+ ++..+|+|+||+|++||+++|+|||||||||||++|+|... +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAY-------------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEE-------------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 46677776544 23469999999999999999999999999999999999876 347 99999998
Q ss_pred cCCh-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 932 PKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 932 ~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
++.. ...++.+||++|++.++|.+||+||+.|+...+ .....+..+.++++++.++|.++.++.+ .+||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 223567999999999999999999999986543 2334455667899999999999888874 579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++||+++ +....+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999975 57788999999975 89999
Q ss_pred ecCCC
Q 001228 1089 AGPLG 1093 (1119)
Q Consensus 1089 ~g~~~ 1093 (1119)
.|+..
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 98754
No 99
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-38 Score=320.35 Aligned_cols=222 Identities=24% Similarity=0.393 Sum_probs=176.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCCc-----ccceEEEeccCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL 255 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~ 255 (1119)
.+.+|+|||+.|+++++||++|||||||||||++|....+ +..+++|+|.|+|+++.+.. .++.+|+|+|.+.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 3569999999999999999999999999999999987644 45688999999999886532 3688999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc-ccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 334 (1119)
-|| +|++||+.|+.+..|... +.+.+ +++..|+.-+|-+ ..|.+
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~~lde--------------------------------iVe~sLk~AaLWdEVKDrL 143 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--KELDE--------------------------------IVESSLKKAALWDEVKDRL 143 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--HHHHH--------------------------------HHHHHHHHhHhHHHhHHHh
Confidence 999 899999999998877543 11111 1222222222211 11111
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
= +...||||||+||++|||||+-+|+|||||||||+|||.++..|-+++.++.+ .-|+|+++| ...+..+..|+.
T Consensus 144 ~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTH-nmqQAaRvSD~t 218 (253)
T COG1117 144 H--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTH-NMQQAARVSDYT 218 (253)
T ss_pred h--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeC-CHHHHHHHhHhh
Confidence 1 22356999999999999999999999999999999999999999999999975 457766655 556889999999
Q ss_pred EEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (1119)
..+..|+++++|+.+++ |..|.++.+.||+
T Consensus 219 aFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 219 AFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 99999999999999987 4557776666665
No 100
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=330.00 Aligned_cols=225 Identities=27% Similarity=0.368 Sum_probs=189.6
Q ss_pred ccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEE
Q 001228 870 MKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYC 945 (1119)
Q Consensus 870 ~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~ 945 (1119)
.++..+.++...+++||||++++||++||+||||||||||+|+|+|... +..|+|.++|.++... ..+..++..
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RT 84 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIART 84 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceee
Confidence 3444556778899999999999999999999999999999999999876 4589999999987542 234568899
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhc--------CC-CccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHH
Q 001228 946 EQNDIHSPYVTVYESLLYSAWLRL--------SS-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016 (1119)
Q Consensus 946 ~q~~~~~~~~tv~e~l~~~~~l~~--------~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~ 1016 (1119)
+|...+|+.+||.||+..+...+. +. ....++..+.+.++|+.++|.+.++...+ +||.||||||.
T Consensus 85 FQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LE 159 (250)
T COG0411 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLE 159 (250)
T ss_pred cccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHH
Confidence 999999999999999988754221 11 11234556778999999999999998854 69999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC-
Q 001228 1017 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH- 1094 (1119)
Q Consensus 1017 iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~- 1094 (1119)
|||||+.+|++|+||||.+||.+.....+.+.|+++.++ |.||++|.||++ -++..||++++|.. |+++++|++.+
T Consensus 160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~eV 237 (250)
T COG0411 160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPEEV 237 (250)
T ss_pred HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHHHH
Confidence 999999999999999999999999999999999999874 699999999997 48899999999975 89999998764
Q ss_pred -ChHHHHHHh
Q 001228 1095 -ESHKLIEYF 1103 (1119)
Q Consensus 1095 -~~~~l~~~f 1103 (1119)
+...+++.|
T Consensus 238 ~~dp~VieAY 247 (250)
T COG0411 238 RNNPRVIEAY 247 (250)
T ss_pred hcCHHhHHHh
Confidence 233455544
No 101
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-37 Score=359.01 Aligned_cols=224 Identities=26% Similarity=0.424 Sum_probs=183.3
Q ss_pred cccccc-cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeE
Q 001228 845 GMILPF-QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 923 (1119)
Q Consensus 845 ~~~~~~-~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~ 923 (1119)
|...|. -...|+|+||+|.|+..+ +..+|+|+||+|+|||.+|||||||+||||+.++|....+ +.+
T Consensus 455 G~~~p~~~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--Pts 522 (716)
T KOG0058|consen 455 GTLAPDHLQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTS 522 (716)
T ss_pred CccccccccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 444443 345799999999998643 4679999999999999999999999999999999998776 568
Q ss_pred EEEEECCccCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHH-----HHHHHHHHHcCCCCcc
Q 001228 924 GDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRK-----MFVDEVMELVELKSLN 995 (1119)
Q Consensus 924 G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~ 995 (1119)
|.|.+||+|+++ ..+++.+|+|.|+|.+|.. ||+||+.|+.. ....++.. +.+.+.+. ++.+-.
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY 594 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGY 594 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccc
Confidence 999999999754 5678899999999999865 99999999753 22222211 11222222 344556
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhc
Q 001228 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1075 (1119)
Q Consensus 996 ~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1075 (1119)
|..+|+.|. .||||||||++|||||++||+||||||+||.||+++...|+++|.++.+ ++|||+|+|++ .+.+.+|
T Consensus 595 ~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRL--STV~~Ad 670 (716)
T KOG0058|consen 595 NTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRL--STVRHAD 670 (716)
T ss_pred ccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhh--hHhhhcc
Confidence 777887654 7999999999999999999999999999999999999999999999875 69999999996 4788999
Q ss_pred eEeEEecCcEEEEecCCC
Q 001228 1076 ELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1076 ~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|+++++ |+|++.|...
T Consensus 671 ~Ivvi~~-G~V~E~G~h~ 687 (716)
T KOG0058|consen 671 QIVVIDK-GRVVEMGTHD 687 (716)
T ss_pred EEEEEcC-CeEEecccHH
Confidence 9999975 8999999643
No 102
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.1e-38 Score=361.54 Aligned_cols=218 Identities=26% Similarity=0.367 Sum_probs=185.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.+||++||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999987 9999999998865443 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. + . +....++++++.+||++..++.+.+
T Consensus 104 ~eNi~~~l~~~~~~----------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~p~~----- 144 (375)
T PRK09452 104 FENVAFGLRMQKTP----------A----------A--------------EITPRVMEALRMVQLEEFAQRKPHQ----- 144 (375)
T ss_pred HHHHHHHHhhcCCC----------H----------H--------------HHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 99999975432210 0 0 0112357789999999999988876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++||||||++|||..++..+.+.|+++.+..+.|+|+++|.+ .++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999887788888776655 589999999999999999
Q ss_pred EEEcChhHHHHHHHhcCCCCCCCCChhHHH
Q 001228 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (1119)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (1119)
+..|+++++. ..|.....|+|+
T Consensus 224 ~~~g~~~~i~--------~~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIY--------EEPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHH--------hCcccHHHHHhc
Confidence 9999998873 235544455554
No 103
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-38 Score=371.11 Aligned_cols=211 Identities=24% Similarity=0.443 Sum_probs=177.5
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCC
Q 001228 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHH 257 (1119)
Q Consensus 181 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 257 (1119)
+++.+||+|+|++|+|||.|||+||||+||||+.+.|..+++|+ +|+|.+||+|+.+..+ ++.||+|.|+|.+|
T Consensus 478 Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF 554 (716)
T KOG0058|consen 478 RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLF 554 (716)
T ss_pred CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceee
Confidence 34578999999999999999999999999999999999999997 9999999999987764 58899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
.. ||+|||.|+.. ..+.++.+.++..++. .+. +.++++.+||.||+
T Consensus 555 s~-sI~eNI~YG~~-------------------------~~t~e~i~~AAk~ANa-----h~F---I~~~p~gY~T~VGE 600 (716)
T KOG0058|consen 555 SG-SIRENIAYGLD-------------------------NATDEEIEAAAKMANA-----HEF---ITNFPDGYNTVVGE 600 (716)
T ss_pred cc-cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhCh-----HHH---HHhCccccccccCC
Confidence 75 99999998643 1122223333332221 122 34689999999997
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
. +..||||||||++|||||+.+|.||||||.||+||+.+...+.+.|.+..+ ++|+++.-|.- .+.+.+|+|+++
T Consensus 601 k-G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRL--STV~~Ad~Ivvi 675 (716)
T KOG0058|consen 601 K-GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRL--STVRHADQIVVI 675 (716)
T ss_pred c-cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhh--hHhhhccEEEEE
Confidence 2 234999999999999999999999999999999999999999999998875 57887776653 688999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|++++.|+++|+++
T Consensus 676 ~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 676 DKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCeEEecccHHHHhh
Confidence 9999999999999875
No 104
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=6.6e-38 Score=354.82 Aligned_cols=202 Identities=29% Similarity=0.394 Sum_probs=172.8
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 3569999999999999999999999999999999999865 458999999987532 234567999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|+||+.+.+..+. .......+.++++++.+++.+..++.+ .+||||||||++||+||+.+|++|||||||+|
T Consensus 94 v~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 165 (303)
T TIGR01288 94 VRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTLARALINDPQLLILDEPTTG 165 (303)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987554321 222333456778999999987777764 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||+.++..+++.|++++++|+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 166 LD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 219 (303)
T TIGR01288 166 LDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRP 219 (303)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999878999999999975 56778999999975 789988875
No 105
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-38 Score=339.46 Aligned_cols=202 Identities=29% Similarity=0.398 Sum_probs=172.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 3569999999999999999999999999999999999865 458999999976532 234567999999999889999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|+|++.+....+. ....+..+.++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 90 v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~~ 161 (220)
T cd03265 90 GWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161 (220)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 9999988654331 223334456889999999987777663 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1037 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||+.+++.+.+.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 162 LDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 9999999999999999876 899999999975 56778999999975 788887764
No 106
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=7.8e-38 Score=358.24 Aligned_cols=204 Identities=23% Similarity=0.291 Sum_probs=177.2
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhh----cceEEEEccCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF----ARVSGYCEQNDI 950 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~----~~~~gy~~q~~~ 950 (1119)
+.+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+ ++.+|||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 45669999999999999999999999999999999999876 468999999988643 222 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
++|.+||+||+.|...+. ....++..+.+.++++.++|.+..++.+ .+||||||||++|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 2334455677899999999988777764 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||++||+.++..+++.++++.++ |+|||++||+++ +....+|++++|. +|+++..|+..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~ 215 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPD 215 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHH
Confidence 9999999999999999999999754 899999999975 5678899999997 47999988743
No 107
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-38 Score=336.26 Aligned_cols=199 Identities=27% Similarity=0.447 Sum_probs=169.8
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+|++
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 3469999999999999999999999999999999999865 458999999987643 3456799999999988999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. .......+.+.++++.+++.+..++. +.+||+|||||++||++|+.+|++|+|||||+|||
T Consensus 89 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 89 DQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred HHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99987654432 22233455688999999998766665 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999998877899999999975 46677999999975 7877653
No 108
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.8e-38 Score=359.52 Aligned_cols=206 Identities=27% Similarity=0.414 Sum_probs=177.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+..+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.++|.+||
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 3469999999999999999999999999999999999876 458999999987643 2234679999999999999999
Q ss_pred HHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 958 YESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 958 ~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
+||+.|....+.. .....++..+.+.++++.++|.++.++. +.+||||||||++|||||+.+|++|||||||+|
T Consensus 92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~ 166 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQKQRVALARALAVEPQILLLDEPFGA 166 (353)
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 9999987643211 1223344566789999999998888776 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1037 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||+.++..+++.|+++.++ |.|+|++||+++ +....+|++++|++ |++++.|+..
T Consensus 167 LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~~ 222 (353)
T PRK10851 167 LDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTPD 222 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999765 899999999985 67888999999975 8999988753
No 109
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.9e-38 Score=338.61 Aligned_cols=194 Identities=25% Similarity=0.350 Sum_probs=165.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---h---hhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---TFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. . .+++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 359999999999999999999999999999999999865 458999999987532 1 24567999999999899
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
.+||.||+.+....+. .......+.+.++++.+++.+..++.+ .+||||||||++|||||+.+|+|||||||
T Consensus 94 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred cccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988654321 222334556889999999988777663 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
|+|||+.+++.+.+.|++++++|+|||++||+++ .+...||++++|.+ |+
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999975 46667999999975 54
No 110
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.2e-38 Score=363.27 Aligned_cols=219 Identities=29% Similarity=0.367 Sum_probs=182.3
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~ 953 (1119)
|+++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++
T Consensus 13 y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~ 90 (402)
T PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSF 90 (402)
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCC
Confidence 344679999999999999999999999999999999999876 458999999987643 445678999999999989
Q ss_pred CCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 954 YVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
.+||+|++.++...+.. .........+.++++++.+++.++.++. +.+||+|||||+.|||||+++|+||||||
T Consensus 91 ~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQRv~IArAL~~~P~iLLLDE 165 (402)
T PRK09536 91 EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQRVLLARALAQATPVLLLDE 165 (402)
T ss_pred CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999886432110 0111233456789999999999888876 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
||+|||+.++..++++|+++.++|+|||+++|+++ ++.+.||++++|++ |++++.|+..+ ....+.+.|.
T Consensus 166 PtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~ev~~~~~l~~~~~ 237 (402)
T PRK09536 166 PTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPPADVLTADTLRAAFD 237 (402)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhCcHHHHHHhC
Confidence 99999999999999999999877999999999986 56788999999975 88999998643 2334666664
No 111
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1e-37 Score=340.62 Aligned_cols=203 Identities=27% Similarity=0.374 Sum_probs=172.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hh-hcceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET-FARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~-~~~~~gy~~q~~~~~~~ 954 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... .. .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 3569999999999999999999999999999999999865 458999999987532 12 23569999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+|++||+.+....+. .........++++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||
T Consensus 90 ~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 90 LTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred CcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999999987643321 22233445678899999998776665 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.+++.+.+.|+++.++|+|||++||+++ ++...+|++++|.+ |++++.|+..
T Consensus 162 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 218 (232)
T cd03218 162 AGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTPE 218 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCHH
Confidence 999999999999999999877999999999975 57788999999975 7898888754
No 112
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-38 Score=324.58 Aligned_cols=211 Identities=27% Similarity=0.398 Sum_probs=177.3
Q ss_pred cccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEc
Q 001228 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCE 946 (1119)
Q Consensus 871 ~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~ 946 (1119)
+++...|++.++|++|||++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|||
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VP 84 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVP 84 (237)
T ss_pred EeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCc
Confidence 334455677889999999999999999999999999999999999876 348999999998754 33456799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcC-CCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001228 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1119)
Q Consensus 947 q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 1025 (1119)
|....||.+||+|||..++..+.. ........+++.++|- |.+..++..| .|||||||.|+|||||+.+|
T Consensus 85 egR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 85 EGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred ccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCC
Confidence 999999999999999988755432 1112222677888874 6666677654 69999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1026 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1026 ~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
++|+|||||.||-|.-.+.|.++|+++.++ |.||+++.++.. ...+.+|+.++|.+ |+++++|+..+
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~~e 223 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTAAE 223 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCHHH
Confidence 999999999999999999999999999865 789999999865 46678999999975 89999998543
No 113
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-35 Score=389.18 Aligned_cols=216 Identities=22% Similarity=0.365 Sum_probs=182.5
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++++|++..++ .+++.+|+|||+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 3566777664432 023569999999999999999999999999999999999876 458999999988
Q ss_pred CCh--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 933 KNQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 933 ~~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. ...++.++.++++++.++|.+..++.+ .+||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2345679999999999999999999999776543 223344566889999999998887764 579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|||||+||+||+.+|+||||||||+|||+.+++.++++|+++. +|+|||++||+++ +....+|++++|.+ |++++.|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999975 56678999999975 8898888
Q ss_pred CC
Q 001228 1091 PL 1092 (1119)
Q Consensus 1091 ~~ 1092 (1119)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 64
No 114
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.1e-37 Score=336.91 Aligned_cols=198 Identities=30% Similarity=0.460 Sum_probs=170.0
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCCHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++.+||+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 69999999999999999999999999999999999865 458999999987642 23456799999999888989999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+ ........+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 9998765433 122334456788999999998777766 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
+.+++.+.+.|+++.++|+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999777999999999975 56778999999975 7887653
No 115
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.2e-37 Score=352.08 Aligned_cols=203 Identities=24% Similarity=0.386 Sum_probs=175.5
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+
T Consensus 13 ~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 34569999999999999999999999999999999999876 458999999987643 23456799999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
|+.||+.+.+.++. ...++..+.++++++.++|.+..++.+ ..||+|||||++||+||+.+|++|||||||+
T Consensus 91 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 91 YVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999998765542 223334456889999999998877764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.+++.+++.|+++++ ++|||++||+++ ++.+.||++++|.+ |++++.|+..
T Consensus 163 gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKLD 217 (301)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999864 799999999975 57788999999975 8999988854
No 116
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-37 Score=338.23 Aligned_cols=207 Identities=26% Similarity=0.369 Sum_probs=174.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999999886 999999998875432 245799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.+......... .. +....++.+++.+||++..++.+++
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLS---------EE------------------------EIREIVLEKLEAVGLRGAEDLYPAE 136 (235)
T ss_pred CCCcHHHHHHHHHhhccCCC---------HH------------------------HHHHHHHHHHHHcCCchhhcCChhh
Confidence 99999999988643210000 00 0012346688999998888888876
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||+|++|
T Consensus 137 -----LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l 210 (235)
T cd03261 137 -----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVL 210 (235)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999998765577888877765 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999987753
No 117
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.5e-38 Score=334.51 Aligned_cols=192 Identities=29% Similarity=0.386 Sum_probs=163.0
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCC-CCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI-HSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~-~~~~~tv~ 958 (1119)
+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.....++.++|++|++. .+...|+.
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999866 458999999987654445567999999974 34467999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+...... ...+.+.++++.+++.+..++. +..||+|||||++|||||+.+|++|||||||+|||
T Consensus 91 e~l~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-------AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-------ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987543221 1124578899999998877766 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
+.+++.+++.|++++++|+|||++||+++ ++...||++++|.+ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999975 46667999999975 6653
No 118
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.6e-37 Score=334.60 Aligned_cols=199 Identities=27% Similarity=0.391 Sum_probs=168.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++..|++
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 469999999999999999999999999999999999865 4589999999876431 2235799999999888899999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. ....+..+.++++++.+++.+..++. +..||+|||||++|||+|+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD 162 (213)
T cd03301 91 DNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162 (213)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987643321 22334455678899999998777766 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1039 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
+.++..+++.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 163 AKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999764 899999999975 56677999999975 7888765
No 119
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.4e-37 Score=358.44 Aligned_cols=215 Identities=22% Similarity=0.336 Sum_probs=184.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ +..+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367777765442 3468999999999999999999999999999999999876 4589999999876
Q ss_pred Ch-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 934 NQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
.. ...++.+||++|++.++|.+||+||+.|+...+ .....+..+.++++++.++|.++.++.+ .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223577999999999999999999999976433 1233444567889999999998888874 57999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ +....+|++++|.+ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999764 999999999975 67888999999975 89999887
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 229 ~~ 230 (375)
T PRK09452 229 PR 230 (375)
T ss_pred HH
Confidence 53
No 120
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.9e-37 Score=339.39 Aligned_cols=205 Identities=29% Similarity=0.399 Sum_probs=171.5
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh---h-hcceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE---T-FARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~---~-~~~~~gy~~q~~~~~~~ 954 (1119)
+..+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++... . .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 3469999999999999999999999999999999999865 4589999999876431 2 23569999999999999
Q ss_pred CCHHHHHHHHHHhhcCCC-------ccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 955 VTVYESLLYSAWLRLSSD-------VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
+||+||+.+......... .......+.+.++++.+++.+..++. +..||||||||++|||||+.+|++
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~l 164 (236)
T cd03219 90 LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELSYGQQRRLEIARALATDPKL 164 (236)
T ss_pred CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988654321110 01233445678999999998776665 357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 165 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 165 LLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 9999999999999999999999999877999999999975 56677999999975 788888764
No 121
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.6e-37 Score=351.61 Aligned_cols=206 Identities=27% Similarity=0.420 Sum_probs=177.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 56999999999999999999999999999999999999987 999999998875421 2457999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|.++..+... . +....++.+++.+||++..++.+++
T Consensus 83 v~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 124 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------D------------------------EAEERAEELLELFELGEAADRPVGT---- 124 (302)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhCCchhh----
Confidence 9999998655432110 0 0012356789999999989998877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++. |.|++++.|++ .++.++||+|++|++|+
T Consensus 125 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvi~~sH~~-~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 125 -YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYM-EEADKLCDRIAIIDHGR 201 (302)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999764 77888877665 58889999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+.+++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988754
No 122
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-37 Score=340.03 Aligned_cols=205 Identities=28% Similarity=0.404 Sum_probs=171.1
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++.+||.
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 469999999999999999999999999999999999865 4589999999875432 2245699999999988899999
Q ss_pred HHHHHHHHhhcCC-CccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 959 ESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 959 e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
||+.+....+... ........+.++++++.+++.+..++. +.+||+|||||++|||||+.+|++|||||||+||
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP~~~L 167 (239)
T cd03296 93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167 (239)
T ss_pred HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 9998865332110 012223345678899999998776665 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.+++.+.+.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+..
T Consensus 168 D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 222 (239)
T cd03296 168 DAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTPD 222 (239)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 999999999999999765 899999999975 46778999999975 7898888753
No 123
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-37 Score=341.60 Aligned_cols=205 Identities=30% Similarity=0.372 Sum_probs=170.1
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 469999999999999999999999999999999999865 358999999987542 234567999999999889
Q ss_pred CCCHHHHHHHHHHhh-----cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 954 YVTVYESLLYSAWLR-----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
.+||+||+.+..... ...........+.+.++++.+++.+..++. +.+||+|||||++|||||+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998753210 000111123345678899999998766665 3579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 230 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPPA 230 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCHH
Confidence 999999999999999999999999754 899999999986 56668999999975 7898888753
No 124
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-37 Score=345.24 Aligned_cols=210 Identities=23% Similarity=0.271 Sum_probs=175.8
Q ss_pred ccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hh----hcceEEE
Q 001228 872 TEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET----FARVSGY 944 (1119)
Q Consensus 872 ~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~----~~~~~gy 944 (1119)
+..+.+++..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. .. .++.++|
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 44455666789999999999999999999999999999999999876 358999999987532 11 1357999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001228 945 CEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024 (1119)
Q Consensus 945 ~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 1024 (1119)
++|++.+++.+||+||+.+...... .......+.+.++++.++|.+..++.+ .+||+|||||++|||||+.+
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcC
Confidence 9999998889999999988653321 122334456788999999987777763 47999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1025 p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+||||||||+|||+.+++.+++.|+++.++ |+|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 246 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPE 246 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999998754 899999999975 46778999999975 7898888753
No 125
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=355.86 Aligned_cols=218 Identities=25% Similarity=0.341 Sum_probs=180.8
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++. +..++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~---------~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQ---------GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCC---------CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 456777655421 0113469999999999999999999999999999999999876 45899999998764
Q ss_pred h---h---hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCC
Q 001228 935 Q---E---TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 935 ~---~---~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 1008 (1119)
. . ..++.+||++|++.+++.+||+||+.+....+. .......+.++++++.++|.+..++. +.+||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRY-----PAQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 2 1 235679999999999999999999998754331 22334456688999999998877776 35799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999754 899999999975 56678999999975 8999
Q ss_pred EecCCC
Q 001228 1088 YAGPLG 1093 (1119)
Q Consensus 1088 ~~g~~~ 1093 (1119)
+.|+..
T Consensus 221 ~~g~~~ 226 (343)
T PRK11153 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 988753
No 126
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=358.83 Aligned_cols=203 Identities=27% Similarity=0.377 Sum_probs=175.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+||
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 3469999999999999999999999999999999999876 458999999987643 1234679999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.|+...+. ....+..+.++++++.++|.+..++.+ .+||||||||++|||||+.+|+||||||||+||
T Consensus 93 ~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~L 164 (369)
T PRK11000 93 AENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164 (369)
T ss_pred HHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999998764332 233444567899999999988777763 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.+++.+++.|+++.++ |.|||++||+++ ++...||++++|++ |+++..|+..
T Consensus 165 D~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~~ 219 (369)
T PRK11000 165 DAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (369)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999998765 899999999975 57788999999975 8999988753
No 127
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.6e-37 Score=333.15 Aligned_cols=196 Identities=30% Similarity=0.429 Sum_probs=167.7
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+..+|+|+||++++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++..||
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 3469999999999999999999999999999999999865 458999999987643 2345679999999988889999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.+....+. . ..+.++++++.+++.+..++. +..||+|||||++|||+|+.+|++|||||||+||
T Consensus 90 ~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 90 RENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred HHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 999988654321 1 134578899999998777765 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+.+++.+++.|+++.++|+|||++||+++ ++...+|++++|++ |++++.|
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999998877999999999975 46677999999975 7887654
No 128
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.5e-37 Score=354.83 Aligned_cols=210 Identities=28% Similarity=0.429 Sum_probs=178.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.++|.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 45999999999999999999999999999999999999987 9999999998865433 3679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|..+....... ... .+....++.+++.+||++..|+.+.+
T Consensus 92 ~eni~~~~~~~~~~~~------~~~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~~----- 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------PNA------------------------AAIKAKVTQLLEMVQLAHLADRYPAQ----- 136 (353)
T ss_pred HHHHHhhhhhcccccC------CCH------------------------HHHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 9999987543110000 000 00112456789999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+++|.+ .++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876677877776654 689999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999874
No 129
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.4e-37 Score=380.23 Aligned_cols=207 Identities=29% Similarity=0.488 Sum_probs=180.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1119)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||++++.... ++.++||+|++.+|.. |
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-S 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-S 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-c
Confidence 5899999999999999999999999999999999999997 9999999999887654 6889999999999865 9
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.++. |+.+.++.++++..++.. +. +..++..+||.||+ ++.
T Consensus 563 I~eNi~l~~-------------------------p~~~~e~i~~A~~~ag~~-----~f---I~~lP~gy~t~v~E-~G~ 608 (709)
T COG2274 563 IRENIALGN-------------------------PEATDEEIIEAAQLAGAH-----EF---IENLPMGYDTPVGE-GGA 608 (709)
T ss_pred HHHHHhcCC-------------------------CCCCHHHHHHHHHHhCcH-----HH---HHhccccccccccc-CCC
Confidence 999998752 333344555555554432 11 34688899999995 667
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++.+ ++|+|+..|.+ .+.+.||+|++|++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl--~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL--STIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccc--hHhhhccEEEEccCCc
Confidence 7999999999999999999999999999999999999999999999865 68999998886 5889999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
++.+|+.+++++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999976
No 130
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.5e-37 Score=335.91 Aligned_cols=193 Identities=31% Similarity=0.437 Sum_probs=164.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh------h-hcceEEEEccCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE------T-FARVSGYCEQNDIHS 952 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~------~-~~~~~gy~~q~~~~~ 952 (1119)
+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... . .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 469999999999999999999999999999999999865 4589999999875421 1 245799999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
+.+||+||+.+....+. .......+.+.++++.+++.+..++. +..||||||||++|||||+.+|+||||||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999998754432 22233445688999999998777665 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||+|||+.+++.+.+.|+++++ .|+|||++||+++ ++ ..||++++|++ |+
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999976 5899999999975 34 48999999976 54
No 131
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-37 Score=337.54 Aligned_cols=200 Identities=27% Similarity=0.341 Sum_probs=171.1
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh------hhcceEEEEccCCCCCCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE------TFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~------~~~~~~gy~~q~~~~~~~ 954 (1119)
.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 69999999999999999999999999999999999876 4589999999876421 235679999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+|++||+.+....+. .......+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|||||||
T Consensus 97 ~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999987654331 22333455688999999998777665 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTV 225 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999998765 899999999975 46678999999975 889888763
No 132
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-37 Score=356.83 Aligned_cols=206 Identities=23% Similarity=0.319 Sum_probs=179.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
..+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.+|||+|++.+||++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999987 9999999998765433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
.||+.|+.+..+.. +. +....++.+++.+||.+..++.+.+
T Consensus 109 ~eNi~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~l~L~~~~~~~~~~----- 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------KA------------------------EIASRVNEMLGLVHMQEFAKRKPHQ----- 149 (377)
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99999975432210 00 0112456789999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++||||||+++||..++.++.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999998776788888877665 589999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999999874
No 133
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.5e-37 Score=336.30 Aligned_cols=203 Identities=26% Similarity=0.322 Sum_probs=169.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC-----CCCeeEEEEEECCccCCh-----hhhcceEEEEccC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQN 948 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~-----~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~ 948 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|.. . +.+|+|.++|.++.. ..+++.++|++|+
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 346999999999999999999999999999999999976 4 468999999987532 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
+.++ .+||+||+.+....+.. .......+.+.++++.+++.+..++... +.+||||||||++|||||+.+|++|
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~ll 163 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVL 163 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8877 79999999886543311 1112234567889999999876555421 2579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||||||+|||+.++..+++.|++++++ +|||++||+++ .+...||++++|.+ |++++.|+.
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 224 (227)
T cd03260 164 LLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPT 224 (227)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCc
Confidence 999999999999999999999999876 99999999975 46678999999975 789888875
No 134
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6.7e-38 Score=308.13 Aligned_cols=197 Identities=26% Similarity=0.344 Sum_probs=171.8
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHHHHHHH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYESLLY 963 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~e~l~~ 963 (1119)
..+++|++||++||+||||||||||||+|+|... +.+|+|.|+|.+.... ...|-++.++|+..+|..+||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4678899999999999999999999999999887 4589999999886443 345668999999999999999999988
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1043 (1119)
+..-... -..+.++.++.++..+||..+.++.+ .+||||||||+++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~P~Lk---L~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGLK---LNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcccc---cCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 7532211 12345567899999999999998884 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1044 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1044 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
++..++.++++ ++.|++++||+|+ +....+|+++++++ |+|.+.|+..
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccHH
Confidence 99999999974 5999999999997 78899999999975 8999999853
No 135
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-37 Score=356.52 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=183.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|++..+ ++..+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSF-------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 46777776543 23469999999999999999999999999999999999876 4589999999876
Q ss_pred Ch-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 934 NQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
.. ...+|.+||++|++.++|++||.||+.|+...+ .....+..+.+.++++.++|.++.++. +.+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 234678999999999999999999999876433 223445566789999999999888876 457999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++|||++ +....+|++++|.+ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999999865 4899999999975 67888999999975 89999988
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 54
No 136
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-37 Score=350.76 Aligned_cols=206 Identities=26% Similarity=0.365 Sum_probs=177.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc------cceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999987 9999999998765321 35799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.|.....+.. . .+ ....++.+++.+||++..++.+++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~gL~~~~~~~~~~ 140 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTP----------K----------AE--------------IKARVTELLELVGLSDKADRYPAQ 140 (343)
T ss_pred CCCcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCCchhhhCChhh
Confidence 9999999998865432210 0 00 012356788999999888888876
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||+|++|
T Consensus 141 -----LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l 214 (343)
T PRK11153 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999876678888887765 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988774
No 137
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-37 Score=334.82 Aligned_cols=216 Identities=26% Similarity=0.366 Sum_probs=176.5
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.++.. .....+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~ 74 (233)
T PRK11629 6 LQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMS 74 (233)
T ss_pred EEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 6777877654310 001459999999999999999999999999999999999865 45899999998764
Q ss_pred hh---h---h-cceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 935 QE---T---F-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 935 ~~---~---~-~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
.. . . ++.++|++|++.+++.+|++||+.+...++ ....+...+.+.++++.+++.+..++. +.+|
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 146 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSEL 146 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhC
Confidence 31 1 2 256999999998888999999998865432 122233445688999999998776665 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
|||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ....+|++++|. +|++
T Consensus 147 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~-~G~i 223 (233)
T PRK11629 147 SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMR-DGRL 223 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEE-CCEE
Confidence 99999999999999999999999999999999999999999999875 5899999999974 345578999886 5899
Q ss_pred EEecCC
Q 001228 1087 IYAGPL 1092 (1119)
Q Consensus 1087 ~~~g~~ 1092 (1119)
++.+++
T Consensus 224 ~~~~~~ 229 (233)
T PRK11629 224 TAELSL 229 (233)
T ss_pred EEEecc
Confidence 988875
No 138
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-37 Score=355.72 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=178.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 45999999999999999999999999999999999999987 9999999998765432 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|..+..+.. .. +....++.+++.+||++..++.+++
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~lgL~~~~~~~~~~----- 133 (369)
T PRK11000 93 AENMSFGLKLAGAK----------KE------------------------EINQRVNQVAEVLQLAHLLDRKPKA----- 133 (369)
T ss_pred HHHHHhHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhcCChhh-----
Confidence 99999875432210 00 0112356789999999888888877
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++..+||+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998776678888887765 488899999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 139
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.4e-37 Score=340.03 Aligned_cols=205 Identities=26% Similarity=0.309 Sum_probs=169.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
..+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 459999999999999999999999999999999999865 458999999987532 124567999999999889
Q ss_pred CCCHHHHHHHHHHhh-----cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 954 YVTVYESLLYSAWLR-----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
.+||+||+.+..... ...........+.+.++++.+++.+..++. +.+||||||||++|||||+.+|++|
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999997642110 000111223345678899999998766665 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ .+...||++++|.+ |++++.|+..
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHH
Confidence 999999999999999999999998754 899999999975 46678999999975 7898888754
No 140
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-37 Score=319.54 Aligned_cols=204 Identities=26% Similarity=0.318 Sum_probs=174.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCC--CCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHD--LHHG 258 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 258 (1119)
++|+|||++|.+||.++|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999997 999999998776542 356799999997 6789
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc-cccccccC
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~ 337 (1119)
..||++.|.-..+..+.. +....+.++++.+||+. .++...-+
T Consensus 98 ~~tv~~~l~Epl~~~~~~------------------------------------~~~~~i~~~L~~VgL~~~~l~R~P~e 141 (252)
T COG1124 98 RRTVGRILSEPLRPHGLS------------------------------------KSQQRIAELLDQVGLPPSFLDRRPHE 141 (252)
T ss_pred chhHHHHHhhhhccCCcc------------------------------------HHHHHHHHHHHHcCCCHHHHhcCchh
Confidence 999999997654432211 01112567899999985 45666655
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+|||||..+|++|++|||||+||++.+.+|++.|.++.+..+-|.++.. |...-+..+||||++|
T Consensus 142 -----LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~Is-Hdl~~v~~~cdRi~Vm 215 (252)
T COG1124 142 -----LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFIS-HDLALVEHMCDRIAVM 215 (252)
T ss_pred -----cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEe-CcHHHHHHHhhheeee
Confidence 9999999999999999999999999999999999999999999999988777766665 5566899999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|++++.++..++..
T Consensus 216 ~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 216 DNGQIVEIGPTEELLS 231 (252)
T ss_pred eCCeEEEeechhhhhc
Confidence 9999999999999864
No 141
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-37 Score=317.05 Aligned_cols=207 Identities=25% Similarity=0.355 Sum_probs=175.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHG 258 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 258 (1119)
..++|++||+.+++||+++|+|||||||||||++|+|..++. +|+|.++|++++...+ +..++||||....||
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 467999999999999999999999999999999999999886 9999999999987755 356999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc-CCcccccccccC
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~ 337 (1119)
.|||+|||..++...... . . .....|.+.+.| -|.+-.++.-|+
T Consensus 92 ~LTVeENL~~g~~~~~~~-~-----------~-----------------------~~~~~e~v~~lFP~Lker~~~~aG~ 136 (237)
T COG0410 92 RLTVEENLLLGAYARRDK-E-----------A-----------------------QERDLEEVYELFPRLKERRNQRAGT 136 (237)
T ss_pred hCcHHHHHhhhhhccccc-c-----------c-----------------------ccccHHHHHHHChhHHHHhcCcccC
Confidence 999999998765432110 0 0 000123344444 255566777787
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||+|-++|||||+++|++|+|||||.||-|.-..+|.+.++++.+..+ ..|+.+.|......+++|+.++|
T Consensus 137 -----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g-~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 137 -----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG-MTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred -----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC-cEEEEEeccHHHHHHhhCEEEEE
Confidence 999999999999999999999999999999999999999999999987655 45666789999999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
.+|++++.|+.+++.+
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999998853
No 142
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-37 Score=344.63 Aligned_cols=206 Identities=19% Similarity=0.203 Sum_probs=151.6
Q ss_pred cccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE
Q 001228 849 PFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI 928 (1119)
Q Consensus 849 ~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i 928 (1119)
++.|..+.+.++.+.++. +..+++.++++.++.-+.++++|+||+||||+++++.|..+ +..|-+.+
T Consensus 357 ~~~~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~ 423 (582)
T KOG0062|consen 357 VLSPPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGR 423 (582)
T ss_pred cCCCCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeee
Confidence 345567788887765431 12268999999999999999999999999999999998654 24565554
Q ss_pred CCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCC
Q 001228 929 SGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGL 1007 (1119)
Q Consensus 929 ~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~L 1007 (1119)
.+ +++++|..|...-+..+.|.+--.. ...+ ... .++.+.+-+..+||.. ++... +.+|
T Consensus 424 ~~--------r~ri~~f~Qhhvd~l~~~v~~vd~~-~~~~--pG~----~~ee~r~hl~~~Gl~g~la~~s-----i~~L 483 (582)
T KOG0062|consen 424 HP--------RLRIKYFAQHHVDFLDKNVNAVDFM-EKSF--PGK----TEEEIRRHLGSFGLSGELALQS-----IASL 483 (582)
T ss_pred cc--------cceecchhHhhhhHHHHHhHHHHHH-HHhC--CCC----CHHHHHHHHHhcCCCchhhhcc-----cccc
Confidence 43 4568999997665444444332222 2222 111 2344677888999864 33322 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
|||||-||++|.....+|.+|+|||||+.||..+-..+-++|++. +..||+|||+.+ -+-..|+++++.++|...-
T Consensus 484 SGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 484 SGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999999999999999999987 468999999964 3666799999998654444
Q ss_pred EecC
Q 001228 1088 YAGP 1091 (1119)
Q Consensus 1088 ~~g~ 1091 (1119)
..|.
T Consensus 560 ieg~ 563 (582)
T KOG0062|consen 560 IEGG 563 (582)
T ss_pred eecc
Confidence 4444
No 143
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.2e-37 Score=336.63 Aligned_cols=203 Identities=24% Similarity=0.369 Sum_probs=172.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~~~~ 954 (1119)
+.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++..++.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 469999999999999999999999999999999999865 458999999987642 2345679999999988889
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+||+||+.+...... ........+.+.++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||
T Consensus 92 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 92 LTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999987542111 122334455678999999998776665 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+..
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 221 (240)
T PRK09493 165 SALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDPQ 221 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCHH
Confidence 999999999999999999877999999999975 46677999999975 8899988754
No 144
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.9e-38 Score=314.73 Aligned_cols=210 Identities=22% Similarity=0.372 Sum_probs=181.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 257 (1119)
++++++++||+.+++||+++|+|||||||||.+.++.|+.+|+ +|+|.+||.+++.... +..+||+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4567999999999999999999999999999999999999998 9999999999987654 34599999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
-.|||+|||.-....+.... . ..+.+...+.+|+.|+|.++++..-..
T Consensus 92 r~LtV~dNi~~vlE~~~~d~---------------------~-----------~~~~~~~l~~LL~ef~i~hlr~~~a~s 139 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDL---------------------K-----------KAERKEELDALLEEFHITHLRDSKAYS 139 (243)
T ss_pred hcCcHHHHHHHHHhhhhcch---------------------h-----------HHHHHHHHHHHHHHhchHHHhcCcccc
Confidence 99999999976544321100 0 011233467899999999999988776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||+|+.|||||+.+|+.++||||++|+||.+..+|.+.++.+++ .|.-++++- |...|+..+|||.+++
T Consensus 140 -----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITD-HNVREtL~i~dRaYIi 212 (243)
T COG1137 140 -----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITD-HNVRETLDICDRAYII 212 (243)
T ss_pred -----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEcc-ccHHHHHhhhheEEEE
Confidence 999999999999999999999999999999999999999999999976 466666654 5667999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999999864
No 145
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.6e-36 Score=367.78 Aligned_cols=218 Identities=28% Similarity=0.429 Sum_probs=179.3
Q ss_pred ccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEE
Q 001228 848 LPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIK 927 (1119)
Q Consensus 848 ~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~ 927 (1119)
.|.-...++|+|++|.++. +...+|+|+|++|+|||.+||+|+||||||||+|+|.|+.+ +..|+|.
T Consensus 465 ~~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEE
Confidence 3445567999999998753 22359999999999999999999999999999999999877 4689999
Q ss_pred ECCccCC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------ccc
Q 001228 928 ISGYPKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDS 997 (1119)
Q Consensus 928 i~g~~~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~ 997 (1119)
+||++++ ...+|+.+|||+|++.++.. |++||+.++.. +.+ ++.+.++++..+..+. .+.
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p-----~~~----~e~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNP-----EAT----DEEIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhccccccc
Confidence 9999864 46788999999999988764 99999987531 222 2234455555544332 234
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 998 ~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
.+++. ..+||||||||++|||||+++|+||+||||||+||+++.+.|++.|.+.. +|+|+|+++|+++ ++..||++
T Consensus 602 ~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEE
Confidence 44443 45799999999999999999999999999999999999999999999986 5899999999974 78899999
Q ss_pred eEEecCcEEEEecCCC
Q 001228 1078 LLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1078 l~l~~gG~v~~~g~~~ 1093 (1119)
++|+ +|+++..|+..
T Consensus 678 iVl~-~Gkiv~~gs~~ 692 (709)
T COG2274 678 IVLD-QGKIVEQGSHE 692 (709)
T ss_pred EEcc-CCceeccCCHH
Confidence 9997 58999999854
No 146
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.7e-37 Score=331.94 Aligned_cols=193 Identities=29% Similarity=0.389 Sum_probs=164.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 469999999999999999999999999999999999865 458999999987642 124567999999999888
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..|+.||+.+....+. .......+.++++++.+++.+..++. +..||+|||||++|||||+.+|++||||||
T Consensus 93 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 93 DRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999988654321 22233445688999999998766665 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
|+|||+.++..+.+.|+++.++|+|||++||+++ ++...||++++|.+|
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 9999999999999999998777999999999975 566679999999753
No 147
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=5.8e-37 Score=350.06 Aligned_cols=206 Identities=30% Similarity=0.419 Sum_probs=177.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+||++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999875432 3467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|.+...+... . + ....++.+++.+||++..++.+++
T Consensus 131 v~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~ll~~~~L~~~~~~~~~~---- 172 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------R----------E--------------IEAVIPSLLEFARLESKADARVSD---- 172 (340)
T ss_pred HHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCchhhCCChhh----
Confidence 9999987654332100 0 0 011245678899999999999987
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++.++.+.|+++++ .|.|++++.|+. .++.++||+|++|++|+
T Consensus 173 -LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 173 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGR 249 (340)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976 478888777655 58999999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
++++|+++++..
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
No 148
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-37 Score=344.64 Aligned_cols=219 Identities=21% Similarity=0.319 Sum_probs=177.9
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++.. ....+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 5677777654310 0011359999999999999999999999999999999999876 45899999998764
Q ss_pred h-----hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC--CccccccCCCCCCC
Q 001228 935 Q-----ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK--SLNDSMVGLPGVSG 1006 (1119)
Q Consensus 935 ~-----~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~ 1006 (1119)
. ...++.+||++|++. .+...||+||+.|..... ....++..+.+.++++.++|. +..++. +..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 244678999999974 334579999998865432 233445556788999999996 555655 457
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||||||||++|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||++||+++ ++...||++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999975 46678999999975 89
Q ss_pred EEEecCCC
Q 001228 1086 VIYAGPLG 1093 (1119)
Q Consensus 1086 v~~~g~~~ 1093 (1119)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13637 223 CELQGTPR 230 (287)
T ss_pred EEEECCHH
Confidence 99888753
No 149
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.6e-37 Score=332.61 Aligned_cols=200 Identities=26% Similarity=0.411 Sum_probs=170.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCCH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++..|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 469999999999999999999999999999999999865 458999999987642 2345679999999988889999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.+....+. .......+.++++++.++|.+..++. +.+||+|||||++|||||+.+|++|||||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999988654332 22233345678999999998776665 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+.+++.+.+.|+++++ ++|||++||+++ .+...||++++|.+ |++++.|+.
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999875 699999999975 46677999999975 788888764
No 150
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.1e-36 Score=330.85 Aligned_cols=205 Identities=38% Similarity=0.670 Sum_probs=170.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC-CCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~-~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+.+|+|+||+|++||+++|+||||||||||+++|+|... +++.+|+|.++|.+......++.++|++|++.+++.+|+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 569999999999999999999999999999999999764 1235899999998775555667899999999999999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHH-HHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDE-VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
||+.+..................+++ .++.+++.+..++. +..||+|||||++|||+|+.+|++|+|||||+||
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~illlDEP~~gL 174 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence 99998754332211112222233455 88889888766655 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+.++..+.+.|+++.++|.|||++||++..++.+.||++++|.+ |++++.|
T Consensus 175 D~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999998877999999999974367889999999975 7888765
No 151
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6.7e-37 Score=337.94 Aligned_cols=202 Identities=27% Similarity=0.391 Sum_probs=170.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----------hhhcceEEEEccC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----------ETFARVSGYCEQN 948 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----------~~~~~~~gy~~q~ 948 (1119)
..+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 469999999999999999999999999999999999865 457999999986532 2245679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
+.+++..|+.||+.+...... ........+.+.++++.+++.+..++. +..||+|||||++|||||+.+|++|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~Gq~qrv~la~al~~~p~ll 166 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRLSGGQQQRVAIARALAMRPEVI 166 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhCChHHHHHHHHHHHHhcCCCEE
Confidence 998889999999987543211 122333445678899999998766665 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 167 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 228 (250)
T PRK11264 167 LFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPA 228 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999877999999999975 46678999999975 789888874
No 152
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-37 Score=344.98 Aligned_cols=219 Identities=23% Similarity=0.306 Sum_probs=177.9
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.++.. ......+|+||||+|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 5677877765311 00113599999999999999999999999999999999998763 4799999876531
Q ss_pred ---------------------------hhhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q 001228 935 ---------------------------QETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986 (1119)
Q Consensus 935 ---------------------------~~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l 986 (1119)
....++.+||++|++. .+...||+||+.|+.... ....++..+.+.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 1234677999999863 344579999998865432 233445556789999
Q ss_pred HHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001228 987 ELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065 (1119)
Q Consensus 987 ~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1065 (1119)
+.++|. ++.++. +..||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566665 45799999999999999999999999999999999999999999999998779999999999
Q ss_pred ccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1066 PSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1066 ~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
++ .+.+.||++++|++ |++++.|+..
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~~ 250 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDTY 250 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 75 46788999999975 7999988753
No 153
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-37 Score=336.23 Aligned_cols=202 Identities=26% Similarity=0.369 Sum_probs=171.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+.+|+|+||+|++||+++|+||||||||||+++|+|... +..|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 459999999999999999999999999999999999865 457999999987532 234567999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC--ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
++||+.+...++. .......+.+.++++.+++.+ ..++. +.+||+|||||++|||||+.+|++|||||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999987654331 223334556889999999985 55554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|+..
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 221 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTPD 221 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999764 899999999975 56778999999975 7898888753
No 154
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-37 Score=337.49 Aligned_cols=200 Identities=29% Similarity=0.412 Sum_probs=170.0
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ..+.+||++|++.+++..||.|
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHH
Confidence 469999999999999999999999999999999999865 458999999987642 2345899999998888899999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
|+.+....+. .......+.+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+|||+
T Consensus 90 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 90 NVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161 (255)
T ss_pred HHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 9987643321 22333445688999999998766665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCC
Q 001228 1040 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPL 1092 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~ 1092 (1119)
.++..+.+.|+++++ .|+|||++||+++ .+...||++++|.+ +|+++..++.
T Consensus 162 ~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 162 FTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999854 5899999999975 56778999999974 6899888754
No 155
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-36 Score=332.33 Aligned_cols=210 Identities=30% Similarity=0.440 Sum_probs=175.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 45999999999999999999999999999999999999886 9999999988754322 3579999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+....+...+ ++.+ +....++.+++.+||++..++.+++
T Consensus 92 ~e~l~~~~~~~~~~~~-----------------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (239)
T cd03296 92 FDNVAFGLRVKPRSER-----------------PPEA-------------EIRAKVHELLKLVQLDWLADRYPAQ----- 136 (239)
T ss_pred HHHHhhhhhhcccccc-----------------CCHH-------------HHHHHHHHHHHHcCChhhhhcChhh-----
Confidence 9999886432211000 0000 0011345688999998888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+++|++++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999765578888888776 467889999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+.+++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999988763
No 156
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-37 Score=340.62 Aligned_cols=214 Identities=27% Similarity=0.367 Sum_probs=177.4
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++ ++..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 70 (274)
T PRK13647 5 IEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVN 70 (274)
T ss_pred EEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 56777765442 12359999999999999999999999999999999999865 45899999998764
Q ss_pred h---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 935 Q---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
. ...++.+||++|++. .++..||.||+.|..... ........+.+.++++.++|.+..++. +..||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG 142 (274)
T PRK13647 71 AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYG 142 (274)
T ss_pred CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHH
Confidence 3 234567999999973 345689999998764321 223334445688999999998877776 3579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|.+ |++++.|
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 220 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEG 220 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999975 45678999999975 7899888
Q ss_pred CC
Q 001228 1091 PL 1092 (1119)
Q Consensus 1091 ~~ 1092 (1119)
+.
T Consensus 221 ~~ 222 (274)
T PRK13647 221 DK 222 (274)
T ss_pred CH
Confidence 75
No 157
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4e-37 Score=331.39 Aligned_cols=200 Identities=30% Similarity=0.444 Sum_probs=163.9
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCC--CCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS--PYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~--~~~t 956 (1119)
+..+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++. ..++.++|++|++.+. +..|
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 3469999999999999999999999999999999999865 45899999997653 3456799999998763 3479
Q ss_pred HHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 957 VYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 957 v~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
|+||+.+....... .........+.++++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 161 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99999875432110 0011123345688999999998766665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+ | +++.|
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 99999999999999999877999999999975 46678999999964 5 55544
No 158
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-37 Score=336.53 Aligned_cols=203 Identities=28% Similarity=0.403 Sum_probs=171.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +..|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 469999999999999999999999999999999999865 458999999987532 12346799999999888889
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
|+.||+.+...++. ..........++++++.+++.+..+.. +..||+|||||++|||||+.+|++|||||||+
T Consensus 94 tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (241)
T PRK10895 94 SVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEPFA 166 (241)
T ss_pred cHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987543221 122233455688899999998766655 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.++..+.+.++++.++|+|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 222 (241)
T PRK10895 167 GVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTPT 222 (241)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCHH
Confidence 99999999999999998877999999999975 57788999999975 7899888754
No 159
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.6e-37 Score=329.78 Aligned_cols=193 Identities=26% Similarity=0.388 Sum_probs=162.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCC-CCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDI-HSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~-~~~~~ 955 (1119)
+.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++. .++..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 569999999999999999999999999999999999865 458999999986532 334567999999975 36678
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
|++||+.+..... ........+.++++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764322 112233345678899999998766665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
|||+.+++.+++.|++++++|+|||++||+++ ++...||++++|.+|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999975 466679999999753
No 160
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-37 Score=331.23 Aligned_cols=207 Identities=26% Similarity=0.370 Sum_probs=180.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC----CCcccceEEEeccCCC-CCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN----EFVPQRTCAYISQHDL-HHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~----~~~~~~~~~yv~Q~d~-~~~ 258 (1119)
..+|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.++|.+.. ....++.+|||+|++. .+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999997 899999999865 2334688999999963 345
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.-||.|.+.|+.+..+.... +...+++.+++.+||.+.++..+-+
T Consensus 94 ~~tV~~evafg~~n~g~~~~----------------------------------e~~~rv~~~l~~vgl~~~~~r~p~~- 138 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE----------------------------------EIEERVAEALELVGLEELLDRPPFN- 138 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH----------------------------------HHHHHHHHHHHHcCchhhccCCccc-
Confidence 67999999998776553210 1123578899999999999988877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.+..+.|+|++.|+ ...+.+++|++++|+
T Consensus 139 ----LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd-~~~~~~~ad~v~vl~ 213 (235)
T COG1122 139 ----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLD 213 (235)
T ss_pred ----cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc-HHHHHhhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999988766787777654 568999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001228 419 EGQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1119)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877754
No 161
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1e-36 Score=339.51 Aligned_cols=227 Identities=20% Similarity=0.301 Sum_probs=183.2
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTR-------------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 36777776543 23469999999999999999999999999999999999865 4589999999875
Q ss_pred Chh------hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 934 NQE------TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 934 ~~~------~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
... ..++.++|++|++.+++.+|+.||+.+...... ........+.+.++++.+++.+..++. +..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 321 235679999999988899999999987543211 112333445678899999998777766 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
|||||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |+|||++||+++ ++...||++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999975 56778999999975 899
Q ss_pred EEecCCCC----ChHHHHHHhh
Q 001228 1087 IYAGPLGH----ESHKLIEYFE 1104 (1119)
Q Consensus 1087 ~~~g~~~~----~~~~l~~~f~ 1104 (1119)
++.|+..+ ....+.+|+.
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK11831 223 VAHGSAQALQANPDPRVRQFLD 244 (269)
T ss_pred EEeCCHHHHhcCCcHHHHHHHH
Confidence 99887542 1123456665
No 162
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-37 Score=328.97 Aligned_cols=200 Identities=31% Similarity=0.436 Sum_probs=169.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999886 999999998875432 24579999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+.. .. + ....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------KA----------E--------------IRARVRELLELVGLEGLLNRYPHE----- 130 (213)
T ss_pred HHHHHhHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhcChhh-----
Confidence 99998754321100 00 0 011245678899999888888877
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998765577888777665 478899999999999999
Q ss_pred EEEc
Q 001228 423 VYQG 426 (1119)
Q Consensus 423 v~~G 426 (1119)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
No 163
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=6.1e-37 Score=332.20 Aligned_cols=200 Identities=31% Similarity=0.454 Sum_probs=166.8
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hh-hcceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET-FARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~-~~~~~gy~~q~~~~~~~ 954 (1119)
+..+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... .. .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 3469999999999999999999999999999999999876 458999999987532 12 24569999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHc-CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
+|++||+.+...... .......+.++++.+ ++.+..++. +..||+|||||++|||||+.+|++|+||||
T Consensus 90 ~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 90 LTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred CcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999988654321 112234466777777 466555554 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 160 SEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 9999999999999999999877899999999975 46778999999975 789888763
No 164
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-37 Score=328.65 Aligned_cols=197 Identities=35% Similarity=0.513 Sum_probs=167.1
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCCH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
..+|+|+||++++| +++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 46999999999999 999999999999999999999865 458999999987542 2345679999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
.||+.+...++. ....+..+.++++++.+++.+..+.. +..||+|||||++|||||+.+|++|||||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 161 (211)
T cd03264 90 REFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161 (211)
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988654432 22233345678999999998776665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+.+++.+.+.|+++++ +.|||++||+++ .+...+|++++|++ |++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 162 DPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred CHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999976 599999999975 45667999999975 7887654
No 165
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7.9e-37 Score=329.39 Aligned_cols=194 Identities=26% Similarity=0.375 Sum_probs=165.3
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999865 458999999987532 124567999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
.+|+.||+.+....+. ...+...+.+.++++.+++.+..++. +.+||+|||||++|||||+.+|+||+||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988654321 22333455678999999998776665 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
|+|||+.+++.+.+.|+++.++|+|||++||+++ .+...||++++|.+ |+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999975 45667899999975 54
No 166
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.5e-37 Score=305.15 Aligned_cols=205 Identities=25% Similarity=0.381 Sum_probs=177.3
Q ss_pred CCCcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEec
Q 001228 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYIS 251 (1119)
Q Consensus 178 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~ 251 (1119)
+.+....++|+|||+.|++||++-|+||||||||||||.|.+...|+ .|+|.+||+++.... .+|.||+|+
T Consensus 9 k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVF 85 (223)
T COG2884 9 KAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVF 85 (223)
T ss_pred hhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEe
Confidence 34444566999999999999999999999999999999999999997 999999999987543 258899999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccc
Q 001228 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (1119)
Q Consensus 252 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 331 (1119)
|+..+++..||.||+.|+.+..|... .+.+.++.++|+..||.+.+
T Consensus 86 QD~rLL~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~ 131 (223)
T COG2884 86 QDFRLLPDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKA 131 (223)
T ss_pred eeccccccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhh
Confidence 99999999999999999887765321 11234567899999999999
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhc
Q 001228 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (1119)
Q Consensus 332 dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 411 (1119)
+...-. |||||+|||+||||++.+|++|+-||||-.||+..+.+|++.+.++.+ .|.|+++++|. ..-+-++-
T Consensus 132 ~~lP~~-----LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd-~~lv~~~~ 204 (223)
T COG2884 132 RALPSQ-----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHD-LELVNRMR 204 (223)
T ss_pred hcCccc-----cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEecc-HHHHHhcc
Confidence 888776 999999999999999999999999999999999999999999999975 68888888764 44555667
Q ss_pred CeEEEEcCCeEEEEc
Q 001228 412 DDIILLSEGQIVYQG 426 (1119)
Q Consensus 412 D~i~lL~~G~iv~~G 426 (1119)
-+++.|++|+++...
T Consensus 205 ~rvl~l~~Grl~~d~ 219 (223)
T COG2884 205 HRVLALEDGRLVRDE 219 (223)
T ss_pred CcEEEEeCCEEEecc
Confidence 799999999998754
No 167
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=351.55 Aligned_cols=206 Identities=29% Similarity=0.418 Sum_probs=172.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 261 (1119)
++++|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||++..+.. +++.++||+|++.+|+. |
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-T 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-T 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc-c
Confidence 6899999999999999999999999999999999999986 999999999987665 56899999999999985 9
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
+||||.|+..-. .+.++.+..+.. .+.+.+.-++..||.+|+ .++
T Consensus 411 ireNi~l~~~~~----------------------s~e~i~~al~~a------------~l~~~v~~p~GLdt~ige-~G~ 455 (559)
T COG4988 411 IRENILLARPDA----------------------SDEEIIAALDQA------------GLLEFVPKPDGLDTVIGE-GGA 455 (559)
T ss_pred HHHHhhccCCcC----------------------CHHHHHHHHHHh------------cHHHhhcCCCcccchhcc-CCC
Confidence 999998853210 011111111111 112222225677999995 678
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
||||||+|||++|||++.+++++++||||++||.++...|.+.|.++++ ++|++++.|++ +...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecCCc
Confidence 8999999999999999999999999999999999999999999999987 58999998876 4667899999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
++.+|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999999854
No 168
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=329.51 Aligned_cols=205 Identities=28% Similarity=0.411 Sum_probs=173.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999886 99999999876432 12357999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+..+..+.. .. +....++.+++.+||++..++.+++
T Consensus 90 v~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (220)
T cd03265 90 GWENLYIHARLYGVP----------GA------------------------ERRERIDELLDFVGLLEAADRLVKT---- 131 (220)
T ss_pred HHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHhhCChhh----
Confidence 999998864332110 00 0112356789999999888888877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|.+|+
T Consensus 132 -LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGR 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999998765467877776665 47889999999999999
Q ss_pred EEEEcChhHH
Q 001228 422 IVYQGPRDNV 431 (1119)
Q Consensus 422 iv~~G~~~~~ 431 (1119)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
No 169
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.2e-36 Score=332.89 Aligned_cols=201 Identities=30% Similarity=0.442 Sum_probs=168.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCCH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ....+.++|++|++.+++..|+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 469999999999999999999999999999999999865 458999999987532 1223579999999988889999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.+....+ ........+.+.++++.+++.+..++. +..||+|||||++|||||+.+|+||||||||+||
T Consensus 92 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~~L 163 (236)
T TIGR03864 92 RQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEIARALLHRPALLLLDEPTVGL 163 (236)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 99998765432 122233445678899999998776665 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.++..+.+.|+++++ +|+|||++||+++ ++ ..+|++++|++ |++++.|+..
T Consensus 164 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~~~ 217 (236)
T TIGR03864 164 DPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGAAA 217 (236)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCCHH
Confidence 99999999999999974 5899999999975 34 45999999975 7888888753
No 170
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-37 Score=320.69 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=185.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc----ceEEEeccCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHH 257 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 257 (1119)
....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+. ..++..+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 4678999999999999999999999999999999999999997 99999999999887653 4588999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
++|||.||+..++..+.. +.......+.. .+ ..+.......+|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l~~~~~~--------~~-----------e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLLGRPRAR--------KE-----------EREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhhccccch--------hh-----------HHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999987664421 00000000000 00 011223456799999999999999998
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||+|||||+.||+||+.+|++||||||.+||.+..+.++.+.++++.+..+.|+ +.+-|...-++++||+|++|
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~ti-llIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTI-LLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEE-EEEEeccHHHhhhccEEEec
Confidence 999999999999999999999999999999999999999999999987545555 45567788999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999864
No 171
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=345.06 Aligned_cols=219 Identities=23% Similarity=0.341 Sum_probs=178.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.. ......+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 47899988766411 0012359999999999999999999999999999999999876 4589999999765
Q ss_pred Ch-------------------hhhcceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC
Q 001228 934 NQ-------------------ETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992 (1119)
Q Consensus 934 ~~-------------------~~~~~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~ 992 (1119)
.. ..+++.+|||+|++ .+++ .||+||+.|+.... .....+....+.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23567899999997 3444 59999998864322 223344455688999999996
Q ss_pred -CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHH
Q 001228 993 -SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1071 (1119)
Q Consensus 993 -~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1071 (1119)
++.++. +.+||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455554 4579999999999999999999999999999999999999999999999777999999999975 466
Q ss_pred HhhceEeEEecCcEEEEecCCC
Q 001228 1072 EAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1072 ~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
..||++++|.+ |++++.|+..
T Consensus 241 ~~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCHH
Confidence 78999999975 7999998754
No 172
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.9e-37 Score=329.15 Aligned_cols=195 Identities=25% Similarity=0.360 Sum_probs=165.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~~~~ 954 (1119)
..+|+++||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 469999999999999999999999999999999999865 458999999987631 2345679999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+|+.||+.+...... ........+.+.++++.+++.+..++. +.+||+|||||++|||||+.+|++|||||||
T Consensus 91 ~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 91 LTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999987642111 122233445678899999998776666 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
+|||+.+++.+.+.|++++++|+|||++||+++ ++...||++++|++ |+
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999877999999999975 56678999999975 54
No 173
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=340.65 Aligned_cols=219 Identities=25% Similarity=0.351 Sum_probs=177.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++.. ....+.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 4677877765310 0011359999999999999999999999999999999999876 45899999998763
Q ss_pred h-------hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCC
Q 001228 935 Q-------ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVS 1005 (1119)
Q Consensus 935 ~-------~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~ 1005 (1119)
. ..+++.+||++|++. .+...||.|++.|..... .....+.++.+.++++.++|. ++.++. +.
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PF 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cc
Confidence 1 235678999999873 233469999999875432 223445556788999999995 455554 45
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
.||+|||||++|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|.+ |+
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~ 221 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GH 221 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999877999999999975 46678999999975 89
Q ss_pred EEEecCCC
Q 001228 1086 VIYAGPLG 1093 (1119)
Q Consensus 1086 v~~~g~~~ 1093 (1119)
+++.|+..
T Consensus 222 i~~~g~~~ 229 (288)
T PRK13643 222 IISCGTPS 229 (288)
T ss_pred EEEECCHH
Confidence 99998754
No 174
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-37 Score=345.70 Aligned_cols=227 Identities=25% Similarity=0.396 Sum_probs=187.5
Q ss_pred cCCCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCC
Q 001228 129 VGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGA 208 (1119)
Q Consensus 129 ~~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 208 (1119)
..+..|.-.|+|+|++.+-. .+++||+++||+|++|+-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 46777788899999887631 234599999999999999999999999
Q ss_pred CHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHh
Q 001228 209 GKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 285 (1119)
Q Consensus 209 GKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 285 (1119)
||||+|++|.+..+ . +|+|.+||+++.+... ++.||||||+..+|.+ ||.+||.++..-.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sa------------ 452 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSA------------ 452 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCCc------------
Confidence 99999999999998 4 8999999999877654 6789999999999976 9999999863211
Q ss_pred hHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC--CChHHHHHHHHHHHHhcCCcE
Q 001228 286 SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEMLVGTANV 363 (1119)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG--LSGGqkkRvsia~al~~~p~i 363 (1119)
..+...++|...+ .-|. ...|++.++|.||+ || |||||||||++|||++.+|+|
T Consensus 453 -------------s~eeV~e~~k~a~-----~hd~---i~~l~~GY~T~VGe---rG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 453 -------------SDEEVVEACKRAG-----LHDV---ISRLPDGYQTLVGE---RGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred -------------CHHHHHHHHHHcC-----cHHH---HHhccccchhhHhh---cccccccchHHHHHHHHHHhcCCCe
Confidence 1111222222111 1121 23478899999998 55 899999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001228 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 364 lllDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~ 433 (1119)
+++|||||.||+.|..++++.+.+.. .++|+|+..|.. .+..-||+|++|++|++...|+.++++.
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999843 489999998865 5788999999999999999999999976
No 175
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-37 Score=307.95 Aligned_cols=227 Identities=27% Similarity=0.393 Sum_probs=189.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
|+.+|++|++ .++++|++||++++|||++||+|||||||||||++|+|... +..|++.++|.+.+
T Consensus 2 i~a~nls~~~-------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSL-------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEe-------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 3556777655 34679999999999999999999999999999999999776 35799999999864
Q ss_pred h---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 935 Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
. .+.++..+.+||+..+.+..||+|-+.++..-... .....+..+.++++|+..++.++..+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 3 45677889999999998889999999998543211 1122244456889999999999887764 4799999
Q ss_pred HHHHHHHHHHhcC------CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1012 RKRLTIAVELVAN------PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1012 rqrl~iA~aL~~~------p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||||.+||.|++- +++||||||||.||...+..++++.++++++|..|++|-||++. ...+||++++|. +|+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCe
Confidence 9999999999763 46899999999999999999999999999999999999999874 677899999997 589
Q ss_pred EEEecCCCC--ChHHHHHHhh
Q 001228 1086 VIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1086 v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
++..|++.+ ..+.+...|.
T Consensus 219 v~a~g~p~~vlt~Etl~~vyg 239 (259)
T COG4559 219 VIASGSPQDVLTDETLERVYG 239 (259)
T ss_pred EeecCCHHHhcCHHHHHHHhC
Confidence 999998754 4566888886
No 176
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.2e-36 Score=329.80 Aligned_cols=196 Identities=26% Similarity=0.326 Sum_probs=166.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---h---hhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---TFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. . .+++.++|++|++.+++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 469999999999999999999999999999999999875 458999999987532 1 24567999999998888
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..|+.||+.+....+ .....+..+.++++++.+++.+..++. +..||+|||||++|||||+.+|++||||||
T Consensus 93 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 93 DRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred cccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999998865433 122333445678899999998766665 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
|+|||+.+++.+.+.|+++.++|.|||++||+++ ++...+|++++|.+ |+++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 9999999999999999999777899999999975 46667899999975 6664
No 177
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.4e-36 Score=330.81 Aligned_cols=200 Identities=25% Similarity=0.300 Sum_probs=162.9
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCC--CCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQND--IHS 952 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~--~~~ 952 (1119)
.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++ .++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 59999999999999999999999999999999999865 458999999987642 23456799999998 456
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+.+||+||+.+....... ..........+.++++.+++. +..+.. +..||+|||||++|||+|+.+|+|||||
T Consensus 97 ~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 789999999876443211 111111122235788999985 455554 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|||+|||+.+++.+.+.|++++++ |+|||++||+++ .+...||++++|.+ |+++..|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 999999999999999999999765 899999999975 45668999999975 7887654
No 178
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=339.38 Aligned_cols=216 Identities=26% Similarity=0.384 Sum_probs=179.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ +++.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 467888776542 12459999999999999999999999999999999999876 4589999999876
Q ss_pred C-----hhhhcceEEEEccCCCC-CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 934 N-----QETFARVSGYCEQNDIH-SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 934 ~-----~~~~~~~~gy~~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
. ...+++.+||++|++.. +...|++||+.+..... .....+..+.+.++++.++|.+..++. +..|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 3 12355779999999742 34579999998864322 223344456688999999998877766 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
|+|||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999975 45668999999975 789
Q ss_pred EEecCCC
Q 001228 1087 IYAGPLG 1093 (1119)
Q Consensus 1087 ~~~g~~~ 1093 (1119)
++.|+..
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9998754
No 179
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=342.32 Aligned_cols=219 Identities=24% Similarity=0.293 Sum_probs=177.5
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++... .....+|+||||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 56778776653110 011359999999999999999999999999999999999876 45899999998763
Q ss_pred h-------hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCC
Q 001228 935 Q-------ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVS 1005 (1119)
Q Consensus 935 ~-------~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~ 1005 (1119)
. ..+++.+||++|++. .+...||+||+.|+.... .....+..+.++++++.++|. ++.++. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999873 233579999998875322 223344456788999999996 555655 45
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
.||+|||||++|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|||++||+++ ++...||++++|. +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999764 899999999975 5677899999997 58
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
++++.|+..
T Consensus 223 ~i~~~g~~~ 231 (290)
T PRK13634 223 TVFLQGTPR 231 (290)
T ss_pred EEEEECCHH
Confidence 999988743
No 180
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-36 Score=331.71 Aligned_cols=205 Identities=28% Similarity=0.377 Sum_probs=174.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHHG 258 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 258 (1119)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999986 999999999875432 1357999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.+||+||+.+.....+.. . . .....++.+++.+||++..++.+.+
T Consensus 96 ~~t~~e~l~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~- 140 (233)
T cd03258 96 SRTVFENVALPLEIAGVP----------K----------A--------------EIEERVLELLELVGLEDKADAYPAQ- 140 (233)
T ss_pred CCcHHHHHHHHHHHcCCC----------H----------H--------------HHHHHHHHHHHHCCChhhhhcChhh-
Confidence 999999998764322110 0 0 0011346688999999888887766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+++|++++|+
T Consensus 141 ----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~ 215 (233)
T cd03258 141 ----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVME 215 (233)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999998765578888887775 47888999999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987763
No 181
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=5.7e-36 Score=330.30 Aligned_cols=173 Identities=25% Similarity=0.318 Sum_probs=136.7
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHH
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLL 962 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~ 962 (1119)
|+-=.++|..||+++++||||-||||+.++|+|..++ .+|. .. .-+++|-||--.--...||++.+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 4444577889999999999999999999999997663 4554 11 124788888766566789998765
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001228 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042 (1119)
Q Consensus 963 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~ 1042 (1119)
-...-+.. ..-+..++++-++|+++.++.+ .+|||||.|||+||.+|.++.++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 33211111 1123457888899999988874 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1043 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1043 ~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
-.+-++||+... +++|.+++-||..+ +-...|++++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999875 48999999999753 555678888874
No 182
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-36 Score=327.51 Aligned_cols=201 Identities=27% Similarity=0.353 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999886 9999999988753 346799999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.+.....+... . .....++.+++.+||++..++.+++ |
T Consensus 92 e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------A------------------------EARERAEELLELVGLSGFENAYPHQ-----L 132 (220)
T ss_pred HHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCCccc-----C
Confidence 99988643221100 0 0011346688999998888888876 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc--CCe
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~--~G~ 421 (1119)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++. ++.++||++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCE
Confidence 9999999999999999999999999999999999999999999986655788888877764 7788999999999 799
Q ss_pred EEEEcChh
Q 001228 422 IVYQGPRD 429 (1119)
Q Consensus 422 iv~~G~~~ 429 (1119)
++..++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99888653
No 183
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-36 Score=336.33 Aligned_cols=208 Identities=23% Similarity=0.316 Sum_probs=176.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 254 (1119)
..+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3467999999999999999999999999999999999999886 9999999988754321 24699999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 334 (1119)
.+++.+||+||+.+.....+... . .....++.+++.+||++..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------A------------------------EREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhCC
Confidence 99999999999988643221100 0 0011346688999999888888
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+++|++
T Consensus 158 ~~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v 231 (269)
T cd03294 158 PDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRI 231 (269)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEE
Confidence 877 9999999999999999999999999999999999999999999998765578888887765 4788999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|+++++|+.+++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
No 184
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2e-36 Score=342.67 Aligned_cols=206 Identities=30% Similarity=0.412 Sum_probs=175.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 45999999999999999999999999999999999999886 999999998764321 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+.+...+... .+ ....++.+++.+||++..++.+++
T Consensus 94 v~e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~ll~~~~l~~~~~~~~~~---- 135 (303)
T TIGR01288 94 VRENLLVFGRYFGMST--------------------RE--------------IEAVIPSLLEFARLESKADVRVAL---- 135 (303)
T ss_pred HHHHHHHHHHHcCCCH--------------------HH--------------HHHHHHHHHHHCCChhHhcCchhh----
Confidence 9999987543221100 00 011245678899999988998877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .+.|++++.|++ .++.++||+|++|++|+
T Consensus 136 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 136 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGR 212 (303)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999876 477888877765 48889999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+++++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988754
No 185
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.9e-36 Score=328.51 Aligned_cols=208 Identities=25% Similarity=0.372 Sum_probs=174.7
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++..|++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 3469999999999999999999999999999999999865 45899999998764322 25799999999888889999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. .. ...+.++++.+++.+..++. +..||+|||||++||||++.+|++|+|||||+|||
T Consensus 89 ~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 89 ENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred HHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 99987654332 11 23467899999998777765 34799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChHHHHHHhh
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~~l~~~f~ 1104 (1119)
+.+++.+++.|+++.++|+|||++||+++ ++.+.||++++|.+ |++++.|+... .+.+.+.|.
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~-~~~~~~~~~ 219 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK-SENLEKLFV 219 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh-cccHHHHHH
Confidence 99999999999999877999999999975 46678999999975 78999998653 334555554
No 186
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-36 Score=339.13 Aligned_cols=218 Identities=26% Similarity=0.392 Sum_probs=177.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-----ccceEEEeccCCC-CC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL-HH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 257 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999987 999999999876432 2467999999863 33
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc--ccccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMV 335 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 335 (1119)
..+||+||+.|.....+.. . .+....++++++.+||+ +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------E------------------------EEIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------H------------------------HHHHHHHHHHHHHcCCCchhhccCCc
Confidence 4579999998854321110 0 00112356789999997 5677777
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
.+ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++..+.|+|+++|+. .++.++||+|+
T Consensus 143 ~~-----LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~ 216 (287)
T PRK13637 143 FE-----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRII 216 (287)
T ss_pred cc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 66 9999999999999999999999999999999999999999999999775577888877764 57888999999
Q ss_pred EEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001228 416 LLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (1119)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23345655543
No 187
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.6e-36 Score=334.37 Aligned_cols=214 Identities=21% Similarity=0.282 Sum_probs=176.8
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (257)
T PRK10619 6 LNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTIN 70 (257)
T ss_pred EEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcc
Confidence 56777765442 3469999999999999999999999999999999999865 35799999997653
Q ss_pred h----------------hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-cc
Q 001228 935 Q----------------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-DS 997 (1119)
Q Consensus 935 ~----------------~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~ 997 (1119)
. ..+++.++|++|++.+++.+|++||+.+...... ........+.+.++++.+++.+.. ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 148 (257)
T PRK10619 71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK 148 (257)
T ss_pred cccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 1 2345679999999999999999999987542111 122334456688999999997653 44
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 998 ~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
. +..||+|||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++...||++
T Consensus 149 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i 222 (257)
T PRK10619 149 Y-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 222 (257)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4 4579999999999999999999999999999999999999999999999877999999999975 466679999
Q ss_pred eEEecCcEEEEecCC
Q 001228 1078 LLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1078 l~l~~gG~v~~~g~~ 1092 (1119)
++|.+ |++++.|+.
T Consensus 223 ~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 223 IFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99975 789888874
No 188
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.9e-36 Score=328.13 Aligned_cols=195 Identities=26% Similarity=0.384 Sum_probs=163.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hh---hc-ceEEEEccCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET---FA-RVSGYCEQNDIHS 952 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~---~~-~~~gy~~q~~~~~ 952 (1119)
+.+|+++||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .. ++ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 469999999999999999999999999999999999866 458999999987532 11 22 5699999999888
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
+..|++||+.+....+. ....+..+.+.++++.+++.+..++. +..||||||||++|||+|+.+|+||||||
T Consensus 96 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 89999999988654321 12233345678899999998776665 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
||+|||+.++..+.+.|++++++ |+|||++||+++ ....+|++++|++ |+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~--~~~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE--LAKKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEEEeC-CEec
Confidence 99999999999999999999754 899999999975 3456899999975 6664
No 189
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.8e-36 Score=330.18 Aligned_cols=215 Identities=25% Similarity=0.376 Sum_probs=175.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 45999999999999999999999999999999999999886 9999999998765432 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+.....+... . ... .. .... .+....++++++.+||++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~~-~------~~~---~~-~~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-L------LLA---RA-RREE-------------REARERAEELLERVGLADLADRPAGE-- 143 (236)
T ss_pred CCHHHHHHHHHhhccccc-c------ccc---cc-cccH-------------HHHHHHHHHHHHHcCccchhhCChhh--
Confidence 999999988644221000 0 000 00 0000 00112356788999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++. ++.++||++++|++
T Consensus 144 ---LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~ 218 (236)
T cd03219 144 ---LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVLDQ 218 (236)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999876 5788888877664 78899999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
No 190
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=337.99 Aligned_cols=216 Identities=24% Similarity=0.316 Sum_probs=179.1
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++.. ....+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (279)
T PRK13650 5 IEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLT 72 (279)
T ss_pred EEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 6777877655310 11359999999999999999999999999999999999876 45899999998764
Q ss_pred h---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 935 Q---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
. ...++.+||++|++. .++..||+||+.|..... ....++..+.++++++.++|.+..++.+ ..||+|
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgG 144 (279)
T PRK13650 73 EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGG 144 (279)
T ss_pred cCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHH
Confidence 2 345567999999974 567789999998864322 2334445567899999999988777763 479999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++ .+ ..||++++|.+ |+++..
T Consensus 145 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~~ 221 (279)
T PRK13650 145 QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVEST 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999865 999999999975 34 67999999975 899988
Q ss_pred cCCC
Q 001228 1090 GPLG 1093 (1119)
Q Consensus 1090 g~~~ 1093 (1119)
|+..
T Consensus 222 g~~~ 225 (279)
T PRK13650 222 STPR 225 (279)
T ss_pred CCHH
Confidence 8753
No 191
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=335.62 Aligned_cols=217 Identities=22% Similarity=0.238 Sum_probs=176.5
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ ++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (255)
T PRK11300 6 LSVSGLMMRF-------------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIE 70 (255)
T ss_pred EEEeeEEEEE-------------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECC
Confidence 5677766543 23469999999999999999999999999999999999865 45899999998764
Q ss_pred hh---h-hcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-------C-----CccHHHHHHHHHHHHHHcCCCCccccc
Q 001228 935 QE---T-FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-------S-----DVDTKKRKMFVDEVMELVELKSLNDSM 998 (1119)
Q Consensus 935 ~~---~-~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-------~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~ 998 (1119)
.. . .+..++|++|++.+++.+||+||+.+....... . .....+..+.+.++++.+++.+..++.
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (255)
T PRK11300 71 GLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ 150 (255)
T ss_pred CCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC
Confidence 21 2 234589999999999999999999885421100 0 001112334678889999998776666
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceE
Q 001228 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 999 ~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+.+||+|||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++
T Consensus 151 -----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i 224 (255)
T PRK11300 151 -----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRI 224 (255)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 3579999999999999999999999999999999999999999999999765 899999999975 566789999
Q ss_pred eEEecCcEEEEecCCC
Q 001228 1078 LLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1078 l~l~~gG~v~~~g~~~ 1093 (1119)
++|++ |++++.|+..
T Consensus 225 ~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 225 YVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEC-CeEEecCCHH
Confidence 99975 7899888754
No 192
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-36 Score=334.97 Aligned_cols=216 Identities=23% Similarity=0.318 Sum_probs=178.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCC-CCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHD-LHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d-~~~~~ 259 (1119)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35899999999999999999999999999999999999987 999999999876432 235799999997 36777
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|+.+..+.. .. +....++.+++.+||++..+..+++
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------HE------------------------EMKERVNEALELVGMQDFKEREPAR-- 140 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------HH------------------------HHHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999998864322110 00 0112356789999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ ..||+|++|++
T Consensus 141 ---LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~ 215 (279)
T PRK13650 141 ---LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998755789998888864 55 58999999999
Q ss_pred CeEEEEcChhHHHH---HHHhcCCCCC
Q 001228 420 GQIVYQGPRDNVLE---FFEHMGFKCP 443 (1119)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p 443 (1119)
|+++..|+++++.+ .++..|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 99999999988753 2344455433
No 193
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-36 Score=336.52 Aligned_cols=223 Identities=25% Similarity=0.369 Sum_probs=180.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCC--C
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHD--L 255 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d--~ 255 (1119)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999987 99999999987521 1245799999986 4
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 334 (1119)
+++ .||.|++.|+....+.. .. + ....+.++++.+||. ...++.
T Consensus 97 l~~-~tv~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~L~~~~~~~~ 141 (288)
T PRK13643 97 LFE-ETVLKDVAFGPQNFGIP----------KE----------K--------------AEKIAAEKLEMVGLADEFWEKS 141 (288)
T ss_pred ccc-chHHHHHHhHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhccCC
Confidence 454 69999999875432210 00 0 112356788899996 456777
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+.+ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|++++.|++ .++.++||+|
T Consensus 142 ~~~-----LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri 214 (288)
T PRK13643 142 PFE-----LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYV 214 (288)
T ss_pred ccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEE
Confidence 665 999999999999999999999999999999999999999999999875 478888887765 5788999999
Q ss_pred EEEcCCeEEEEcChhHHH---HHHHhcCCCCCCCCChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKGVADFL 452 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~adfl 452 (1119)
++|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 215 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 215 YLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 999999999999999874 34556777777654444433
No 194
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.8e-36 Score=332.29 Aligned_cols=202 Identities=26% Similarity=0.345 Sum_probs=168.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
..+|+|+||+|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.++.. ...++.++|++|++.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 45999999999999999999999999999999999986521 127999999987642 2345679999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC----CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++ .|++||+.+....+. ........+.+.++++.+++. +..++. +..||||||||++|||||+.+|++
T Consensus 94 ~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~l 165 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEV 165 (247)
T ss_pred CC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 88 999999988654331 112334455688999999997 444444 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|||||||+|||+.++..+++.|+++++ ++|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 166 LLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999876 599999999975 56778999999975 789888874
No 195
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=339.65 Aligned_cols=202 Identities=25% Similarity=0.308 Sum_probs=169.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccCCC-C
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDI-H 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~~~-~ 951 (1119)
+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++. .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 359999999999999999999999999999999999876 458999999987532 234567999999973 2
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+..+||.||+.|....+ ....++..+.+.++++.++|. ++.++. +..||+|||||++|||||+.+|++|||
T Consensus 98 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lLlL 169 (287)
T PRK13641 98 LFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PFELSGGQMRRVAIAGVMAYEPEILCL 169 (287)
T ss_pred hccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33579999998764332 123344455688999999996 566665 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||+|||+.++..+.+.|+++.++|.|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 170 DEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 230 (287)
T PRK13641 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASPK 230 (287)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999777999999999975 56778999999975 7899888754
No 196
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-36 Score=331.58 Aligned_cols=214 Identities=29% Similarity=0.390 Sum_probs=174.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999886 999999998876432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.+...... . ... .+ .+..+ . .....++.+++.+||++..++.+++
T Consensus 91 ~~~tv~~~l~~~~~~~~-~-~~~---~~------~~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (241)
T cd03256 91 ERLSVLENVLSGRLGRR-S-TWR---SL------FGLFP-K--------------EEKQRALAALERVGLLDKAYQRADQ 144 (241)
T ss_pred ccCcHHHHHHhhhcccc-h-hhh---hh------cccCc-H--------------HHHHHHHHHHHHcCChhhhCCCccc
Confidence 99999999987532110 0 000 00 00000 0 0112345678899998877877766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+++|++++|
T Consensus 145 -----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l 218 (241)
T cd03256 145 -----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGL 218 (241)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998765578888877765 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988763
No 197
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5.1e-36 Score=341.45 Aligned_cols=230 Identities=20% Similarity=0.218 Sum_probs=180.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|++..++............+...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 46777776554321000000001123469999999999999999999999999999999999876 3589999999876
Q ss_pred Chh------hhcceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCC
Q 001228 934 NQE------TFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGV 1004 (1119)
Q Consensus 934 ~~~------~~~~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~ 1004 (1119)
... .+++.++|++|++ .++|.+||.|++.+...... .....++..+.+.++++.++|. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 421 2456799999998 57889999999988654321 1233445566788999999994 345555 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
.+||||||||++|||||+.+|++||+||||+|||+.++..|+++|+++.++ |.|||+||||++ .+...+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999975 45667999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 238 G~ive~g~~~ 247 (331)
T PRK15079 238 GHAVELGTYD 247 (331)
T ss_pred CEEEEEcCHH
Confidence 8999998753
No 198
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=334.05 Aligned_cols=207 Identities=22% Similarity=0.297 Sum_probs=174.6
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 478888876542 2459999999999999999999999999999999999865 4589999998764
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
. ..++.++|++|++.+++..||+||+.+... . ..+..+.++++.+++.+..++. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 345679999999988888999999987421 0 1234578899999998776665 3579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|++|||+|+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||++||+++ .+...||++++|.+ |++++.++.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999864 4899999999975 46678999999975 789888865
Q ss_pred C
Q 001228 1093 G 1093 (1119)
Q Consensus 1093 ~ 1093 (1119)
.
T Consensus 219 ~ 219 (257)
T PRK11247 219 D 219 (257)
T ss_pred c
Confidence 3
No 199
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.1e-36 Score=324.45 Aligned_cols=200 Identities=29% Similarity=0.398 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 35999999999999999999999999999999999999886 9999999988754322 3579999999999989999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+..+..+.. .. +....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03301 90 YDNIAFGLKLRKVP----------KD------------------------EIDERVREVAELLQIEHLLDRKPKQ----- 130 (213)
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHHhCChhh-----
Confidence 99998764322110 00 0012346688999999888888877
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865578888888775 478889999999999999
Q ss_pred EEEc
Q 001228 423 VYQG 426 (1119)
Q Consensus 423 v~~G 426 (1119)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
No 200
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=334.65 Aligned_cols=217 Identities=27% Similarity=0.363 Sum_probs=176.3
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~ 955 (1119)
++.+|+||||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 3569999999999999999999999999999999999865 458999999986532 23456799999999888889
Q ss_pred CHHHHHHHHHHhhc-CCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 956 TVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 956 tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
|+.||+.++..... ..........+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|||||||
T Consensus 92 tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~ 166 (255)
T PRK11231 92 TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPT 166 (255)
T ss_pred cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999987521100 00111123345678899999998777765 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |+++..|+..+ ....+.+.|+
T Consensus 167 ~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~~~~~~~~~~ 236 (255)
T PRK11231 167 TYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPEEVMTPGLLRTVFD 236 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHHHhcCHHHHHHHhC
Confidence 999999999999999998777999999999975 57788999999975 78888887543 2234566665
No 201
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3e-36 Score=331.17 Aligned_cols=214 Identities=25% Similarity=0.347 Sum_probs=173.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEEccCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~~q~~~~~~~~ 955 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 469999999999999999999999999999999999865 4589999999875321 1234699999999999999
Q ss_pred CHHHHHHHHHHhhcC-----CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 956 TVYESLLYSAWLRLS-----SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
|++||+.+....... .....+.....++++++.+++.+..++. +..||+|||||++|||||+.+|++|+|
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Ge~qrv~laral~~~p~~lll 167 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSHGQKQWLEIGMLLMQDPKLLLL 167 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999875421100 0011223445688999999998776665 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHh
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYF 1103 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f 1103 (1119)
||||+|||+.++..+++.|+++.+ ++|||++||+++ ++...||++++|.+ |++++.|+... ....+.++|
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~~~~~~~~~~~~~~ 239 (242)
T TIGR03411 168 DEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSLDQVQADPRVIEVY 239 (242)
T ss_pred cCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCHHHHhcCHHHHHHh
Confidence 999999999999999999999875 799999999975 46678999999975 78888887542 123355555
No 202
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=332.18 Aligned_cols=212 Identities=23% Similarity=0.341 Sum_probs=174.3
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++ ++.+|+++||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 70 (237)
T PRK11614 6 LSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDIT 70 (237)
T ss_pred EEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecC
Confidence 67777765432 3469999999999999999999999999999999999865 45899999998754
Q ss_pred hh----hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHc-CCCCccccccCCCCCCCCCH
Q 001228 935 QE----TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ~~----~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ..++.++|++|++.+++..||.||+.+..... ......+.++++++.+ ++.+..+.. +..||+
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 140 (237)
T PRK11614 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSG 140 (237)
T ss_pred CCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCH
Confidence 31 23567999999999888899999998754221 1122233466777777 465544444 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
|||||++|||+|+.+|+||+|||||+|||+.+++.+.+.|+++.++|+|||++||+++ ++.+.||++++|.+ |++++.
T Consensus 141 G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 218 (237)
T PRK11614 141 GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLE 218 (237)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999975 57788999999975 799999
Q ss_pred cCCC
Q 001228 1090 GPLG 1093 (1119)
Q Consensus 1090 g~~~ 1093 (1119)
|+..
T Consensus 219 ~~~~ 222 (237)
T PRK11614 219 DTGD 222 (237)
T ss_pred CCHH
Confidence 8864
No 203
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=339.87 Aligned_cols=218 Identities=22% Similarity=0.336 Sum_probs=176.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++... ...+.+|+||||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 56777776653100 011359999999999999999999999999999999999876 45899999998763
Q ss_pred h-------hhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCC
Q 001228 935 Q-------ETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGV 1004 (1119)
Q Consensus 935 ~-------~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~ 1004 (1119)
. ..+++.+||++|++. +++ .||.||+.|..... .....+..+.+.++++.++|. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 235678999999863 444 59999998864322 223344556788999999996 566655 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..||+|||||++|||||+.+|+||||||||+|||+.++..++++|+++.+ .|+|||++||+++ ++.+.+|++++|.+
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 57999999999999999999999999999999999999999999999975 4899999999975 46678999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 222 G~i~~~g~~~ 231 (286)
T PRK13646 222 GSIVSQTSPK 231 (286)
T ss_pred CEEEEECCHH
Confidence 7899888753
No 204
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=331.02 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=170.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---------hhhhcceEEEEccCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---------QETFARVSGYCEQNDI 950 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---------~~~~~~~~gy~~q~~~ 950 (1119)
+.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++. ....++.++|++|++.
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 469999999999999999999999999999999999875 45899999998652 1234567999999999
Q ss_pred CCCCCCHHHHHHHHH-HhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 951 HSPYVTVYESLLYSA-WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
+++.+|+.||+.+.. ... ..........+.++++.+++.+..++. +..||+|||||++|||||+.+|+||+
T Consensus 93 ~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lli 164 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLSGGQQQRVAIARALMMEPQVLL 164 (242)
T ss_pred ccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999997532 221 122233345678899999998777766 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|.+ |++++.|+..
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 226 (242)
T PRK11124 165 FDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDAS 226 (242)
T ss_pred EcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999877999999999975 46677999999975 8899988753
No 205
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.1e-36 Score=340.62 Aligned_cols=205 Identities=29% Similarity=0.440 Sum_probs=176.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999998875422 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|.||+.|.+++.+... . +....++.+++.+||++..++.+++
T Consensus 92 v~e~l~~~~~~~~~~~--------------------~--------------~~~~~~~~~l~~~gl~~~~~~~~~~---- 133 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG--------------------Q--------------LLKQRVEEMIELVGLRPEQHKKIGQ---- 133 (301)
T ss_pred HHHHHHHHHHHcCCCH--------------------H--------------HHHHHHHHHHHHCCCchHhcCchhh----
Confidence 9999998765432110 0 0011356789999999999988877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+++|+++||||||+|||+.++..+.+.|++++. ++|++++.|++ .++.++||+|++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l-~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 134 -LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIM-QEVEAICDRVIIINKGK 209 (301)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999853 67777776665 58999999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998765
No 206
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.3e-36 Score=328.08 Aligned_cols=195 Identities=24% Similarity=0.348 Sum_probs=164.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999886 999999998875432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.|..+..+.. .. .....++.+++.+||++..++.+++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVP----------PR------------------------DANERVSAALEKVGLEGKAHALPMQ 138 (216)
T ss_pred ccccHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999998864432110 00 0012346688999999888888876
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|
T Consensus 139 -----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l 211 (216)
T TIGR00960 139 -----LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTL 211 (216)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999865 377888777765 4778899999999
Q ss_pred cCCeE
Q 001228 418 SEGQI 422 (1119)
Q Consensus 418 ~~G~i 422 (1119)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
No 207
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.9e-36 Score=328.10 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=173.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999999886 9999999988754321 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+.....+.. . . .....++.+++.+||++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 133 (232)
T cd03218 90 LTVEENILAVLEIRGLS----------K----------K--------------EREEKLEELLEEFHITHLRKSKASS-- 133 (232)
T ss_pred CcHHHHHHHHHHhcCCC----------H----------H--------------HHHHHHHHHHHHcCChhhhhCChhh--
Confidence 99999998753321110 0 0 0012346788999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++
T Consensus 134 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~ 208 (232)
T cd03218 134 ---LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYE 208 (232)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999876 4778888777654 88899999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999987753
No 208
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-36 Score=332.59 Aligned_cols=215 Identities=26% Similarity=0.330 Sum_probs=174.2
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.++++|+++.+ +++.+|+|+||+|++||++||+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWY-------------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 46777876543 234599999999999999999999999999999999997642 12589999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++ .|++||+.+....+ ........+.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 234567999999988877 89999998865332 1223334456788999998842 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++ ++...||++++|.
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 899999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 228 ~-G~i~~~~~~~ 238 (258)
T PRK14268 228 M-GELIEFGQTR 238 (258)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999988753
No 209
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4e-36 Score=332.08 Aligned_cols=203 Identities=25% Similarity=0.337 Sum_probs=171.3
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----------------hhhcceEE
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----------------ETFARVSG 943 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----------------~~~~~~~g 943 (1119)
..+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 469999999999999999999999999999999999865 458999999986531 13456799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001228 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVA 1023 (1119)
Q Consensus 944 y~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~ 1023 (1119)
|++|++.+++..|+.||+.+...... ........+.+.++++.+++.+..++. +..||+|||||++|||||+.
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~ 163 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM-----PAQLSGGQQQRVAIARALAM 163 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC-----hhhcCHHHHHHHHHHHHHHc
Confidence 99999999999999999987532111 122334455688999999998776665 35799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1024 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1024 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|++ |++++.|+..
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 232 (252)
T TIGR03005 164 RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKPD 232 (252)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999998764 899999999975 46678999999975 8999888753
No 210
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.5e-36 Score=326.92 Aligned_cols=203 Identities=29% Similarity=0.415 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999999886 99999999887532 12456999999999998999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+..+..+... . + ....++.+++.+||++..++.+++
T Consensus 92 v~~~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~---- 133 (220)
T cd03263 92 VREHLRFYARLKGLPK----------S----------E--------------IKEEVELLLRVLGLTDKANKRART---- 133 (220)
T ss_pred HHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCHHHHhChhhh----
Confidence 9999988644322100 0 0 011245688899998888888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++.+++|++++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 134 -LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGK 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999865 477777777664 7778999999999999
Q ss_pred EEEEcChhHH
Q 001228 422 IVYQGPRDNV 431 (1119)
Q Consensus 422 iv~~G~~~~~ 431 (1119)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
No 211
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-36 Score=329.96 Aligned_cols=206 Identities=28% Similarity=0.389 Sum_probs=173.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 45999999999999999999999999999999999999886 999999998875432 245799999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc--cccccccCc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGDE 338 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 338 (1119)
||+||+.+..+..+.. . .+ ....+..+++.+||++ ..++.+.+
T Consensus 91 tv~e~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~l~l~~~~~~~~~~~~- 135 (242)
T cd03295 91 TVEENIALVPKLLKWP----------K----------EK--------------IRERADELLALVGLDPAEFADRYPHE- 135 (242)
T ss_pred cHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCCCcHHHHhcChhh-
Confidence 9999998754322110 0 00 0113456888999985 66777665
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|+
T Consensus 136 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~ 210 (242)
T cd03295 136 ----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMK 210 (242)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999998765577888887776 47789999999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987763
No 212
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=1.8e-34 Score=374.17 Aligned_cols=135 Identities=22% Similarity=0.270 Sum_probs=107.8
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHh---cCCC
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1026 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~---~~p~ 1026 (1119)
.+...||.|+|.+...-..+.....++..+.+ ++++.++|..+ .++. +.+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45578999999887542211111223334445 58889999876 5665 3579999999999999998 6999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCCC
Q 001228 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1027 illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~~ 1093 (1119)
+|||||||+|||+.+...++++|++++++|.|||+++|+++ ....+|++++|. .+|++++.|+..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999975 448899999995 368999998753
No 213
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-36 Score=337.93 Aligned_cols=218 Identities=22% Similarity=0.338 Sum_probs=176.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCC-
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDL- 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 255 (1119)
.++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999986 99999999987531 12357999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 334 (1119)
.+...||+||+.|+.+..+.. .. +....++.+++.+||+ +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------EE------------------------DAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCChhhhhCC
Confidence 333579999998864322110 00 0112356789999997 567887
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+.+ |||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++..+.|+|++.|+. .++.++||+|
T Consensus 143 ~~~-----LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv 216 (290)
T PRK13634 143 PFE-----LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQI 216 (290)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 776 9999999999999999999999999999999999999999999999776678888887765 4788999999
Q ss_pred EEEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001228 415 ILLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (1119)
++|++|+++++|+++++.+ .+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999888742 34444554443
No 214
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-36 Score=348.11 Aligned_cols=204 Identities=22% Similarity=0.284 Sum_probs=173.9
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hh----hcceEEEEccCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET----FARVSGYCEQNDI 950 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~----~~~~~gy~~q~~~ 950 (1119)
+...+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .. .++.+||++|++.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 34458999999999999999999999999999999999876 458999999987642 11 2357999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+++.+||+||+.|....+. ....+..+.+.++++.++|.+..++. +.+||||||||++|||||+.+|+||||
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998764432 22334456688999999998877776 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++...+|++++|.+ |+++..|+..
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 999999999999999999999875 4899999999975 56778999999975 7999888643
No 215
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-36 Score=347.11 Aligned_cols=207 Identities=22% Similarity=0.301 Sum_probs=177.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1119)
...+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 346899999999999999999999999999999999999987 9999999998765432 247999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
+++.+||+||+.|.....+... . +....++++++.+||++..++.+
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINA----------E------------------------ERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCChhhhcCc
Confidence 9999999999998754332100 0 00123467899999998888888
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
.+ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+..++|+|++.|++ .++.+++|+|+
T Consensus 163 ~~-----LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~ 236 (400)
T PRK10070 163 DE-----LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIA 236 (400)
T ss_pred cc-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEE
Confidence 76 9999999999999999999999999999999999999999999998765678888887765 57889999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001228 416 LLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++++.|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999988764
No 216
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-36 Score=334.46 Aligned_cols=201 Identities=24% Similarity=0.373 Sum_probs=170.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCC-CCCCCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDI-HSPYVT 956 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~-~~~~~t 956 (1119)
.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++. .+...|
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 59999999999999999999999999999999999866 458999999987542 345567999999974 344679
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|.||+.+..... ....+...+.++++++.++|.+..++. +..||+|||||++|||||+.+|++|||||||+|
T Consensus 96 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrl~laraL~~~p~llilDEPt~g 167 (277)
T PRK13652 96 VEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167 (277)
T ss_pred HHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 999998765322 223344455688999999998777776 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1037 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||+.++..+.+.++++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 168 LD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~~ 223 (277)
T PRK13652 168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTVE 223 (277)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCHH
Confidence 9999999999999999765 899999999975 56678999999975 7899988754
No 217
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-36 Score=331.29 Aligned_cols=217 Identities=25% Similarity=0.296 Sum_probs=175.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1119)
++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 5 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 5 IETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred EEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 56777765442 245999999999999999999999999999999999986532 34899999998
Q ss_pred cCC-----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCC
Q 001228 932 PKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLP 1002 (1119)
Q Consensus 932 ~~~-----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~ 1002 (1119)
++. ...+++.++|++|++.+++.+|+.||+.+....+.. ....+...+.++++++.+++.+ ..++.
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 146 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY---- 146 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC----
Confidence 763 123456799999999999999999999876543211 0122333456788999998753 22333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...||++++|.+
T Consensus 147 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~ 223 (253)
T PRK14267 147 -PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL 223 (253)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999865 799999999975 46778999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 224 -G~i~~~~~~~ 233 (253)
T PRK14267 224 -GKLIEVGPTR 233 (253)
T ss_pred -CEEEEeCCHH
Confidence 8999988754
No 218
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-36 Score=332.53 Aligned_cols=203 Identities=28% Similarity=0.403 Sum_probs=170.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~ 955 (1119)
++.+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 3469999999999999999999999999999999999865 458999999986532 23456799999999888889
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh------cCCCeEE
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIF 1029 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~------~~p~ill 1029 (1119)
||+||+.+..... ....+...+.++++++.+++.+..++. +..||||||||++|||||+ .+|++|+
T Consensus 92 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv~la~al~~~~~~~~~p~lll 163 (258)
T PRK13548 92 TVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL 163 (258)
T ss_pred CHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 9999998754221 111223345678899999998777766 3579999999999999999 5999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.++..+.+.|+++. ++|.|||++||+++ .+...||++++|.+ |++++.|+..
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (258)
T PRK13548 164 LDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTPA 226 (258)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCHH
Confidence 999999999999999999999987 67999999999975 46678999999975 7888888754
No 219
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.4e-35 Score=330.56 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=173.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 45899999999999999999999999999999999999886 999999998875432 135699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||.||+.+....... .... .....+..+++.+||++..++.+++
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~ 143 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPAP------------------------LLHSTVMMKLEAVGLRGAAKLMPSE 143 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCHH------------------------HHHHHHHHHHHHcCChhhhhCChhh
Confidence 999999999875321100 0000 0011245678899999888888877
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|
T Consensus 144 -----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l 217 (269)
T PRK11831 144 -----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIV 217 (269)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEE
Confidence 9999999999999999999999999999999999999999999998765577888887764 5788999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
No 220
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-36 Score=330.20 Aligned_cols=205 Identities=25% Similarity=0.290 Sum_probs=169.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCccCCh---hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~ 953 (1119)
..+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.++.. ..+++.+||++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 45999999999999999999999999999999999976421 358999999987632 345567999999998888
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
.+||.||+.+....+.. .....+..+.++++++.+++.+ ..++. +.+||||||||++|||||+.+|+||+
T Consensus 96 ~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lll 169 (250)
T PRK14247 96 NLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----AGKLSGGQQQRLCIARALAFQPEVLL 169 (250)
T ss_pred CCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999886433211 1122334456889999999854 23333 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.++..+.+.|+++.+ |+|||++||+++ .+...||++++|.+ |++++.|+..
T Consensus 170 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (250)
T PRK14247 170 ADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPTR 230 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCHH
Confidence 9999999999999999999999864 899999999975 46678999999975 7899888753
No 221
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.9e-36 Score=331.45 Aligned_cols=213 Identities=26% Similarity=0.350 Sum_probs=172.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999886 999999998875432 245699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.++...... ... .+ .+..+ . .....++.+++.+||.+..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~--~~~---~~------~~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKP--TWR---SL------LGRFS-E--------------EDKERALSALERVGLADKAYQRADQ 145 (243)
T ss_pred ccccHHHHHhhccccccc--chh---hh------hcccc-H--------------HHHHHHHHHHHHcCcHhhhcCCccc
Confidence 999999999874321000 000 00 00000 0 0112346678899998877877766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|
T Consensus 146 -----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l 219 (243)
T TIGR02315 146 -----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGL 219 (243)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEE
Confidence 9999999999999999999999999999999999999999999998765577888877765 4678899999999
Q ss_pred cCCeEEEEcChhHH
Q 001228 418 SEGQIVYQGPRDNV 431 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (1119)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998765
No 222
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.5e-36 Score=326.48 Aligned_cols=195 Identities=26% Similarity=0.387 Sum_probs=165.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------ccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999886 999999998875432 13579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||+||+.|.....+... . .....++.+++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------K------------------------ERRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhcChh
Confidence 999999999988654321100 0 001234668899999988888887
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. +||++++
T Consensus 140 ~-----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~ 212 (218)
T cd03255 140 E-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIE 212 (218)
T ss_pred h-----cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEE
Confidence 6 99999999999999999999999999999999999999999999997645788888888764 454 9999999
Q ss_pred EcCCeE
Q 001228 417 LSEGQI 422 (1119)
Q Consensus 417 L~~G~i 422 (1119)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
No 223
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.5e-36 Score=327.95 Aligned_cols=210 Identities=27% Similarity=0.350 Sum_probs=170.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~~q~~~~~~~ 954 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 3469999999999999999999999999999999999876 4589999999875321 124579999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcC-CCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
+|+.||+.+....+. .. ..+.+.++++.++ +.+..++. +..||+|||||++|||+|+.+|++|+||||
T Consensus 90 ~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 90 LTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred CcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999987643321 11 1223567777776 45555554 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCC-hHHHHHHh
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE-SHKLIEYF 1103 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~-~~~l~~~f 1103 (1119)
|+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|.+ |++++.|+.... ...+.+++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~~~~~~~~~~~~ 228 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGDELDEDKVRRYL 228 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHcChHHHHHHh
Confidence 9999999999999999998764 899999999975 46667999999975 789998886442 33355544
No 224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.4e-36 Score=324.79 Aligned_cols=203 Identities=25% Similarity=0.386 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 46999999999999999999999999999999999999886 9999999988754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc-CCcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 338 (1119)
+||+||+.+....... . + .....+.+++.+ +|++..++.+.+
T Consensus 90 ~t~~~~l~~~~~~~~~---~-------------------~--------------~~~~~~~~l~~~~~l~~~~~~~~~~- 132 (222)
T cd03224 90 LTVEENLLLGAYARRR---A-------------------K--------------RKARLERVYELFPRLKERRKQLAGT- 132 (222)
T ss_pred CcHHHHHHHHhhhcCc---h-------------------h--------------HHHHHHHHHHHHHhhhhhhhCchhh-
Confidence 9999999886432110 0 0 001234456666 477767777766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|+
T Consensus 133 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 206 (222)
T cd03224 133 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLE 206 (222)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEee
Confidence 999999999999999999999999999999999999999999999876 467888877665 57889999999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987653
No 225
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.5e-36 Score=328.73 Aligned_cols=208 Identities=23% Similarity=0.269 Sum_probs=167.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhh-cceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF-ARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~-~~~~gy~~q~~~~~~~ 954 (1119)
++.+|+|+||+|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+... ... +..++|++|++.+++.
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 356999999999999999999999999999999999974111458999999987542 122 2348999999999999
Q ss_pred CCHHHHHHHHHHhhcCC----CccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 955 VTVYESLLYSAWLRLSS----DVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
+|++|++.+........ ........+.+.++++.+++. ...++.+. .+||+|||||++|||+|+.+|++||
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~lll 167 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAI 167 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999998754322110 012223345678899999996 34554421 2499999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-hceEeEEecCcEEEEecCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|||||+|||+.+++.+.+.|+++.++|+|||++||+++ .+... ||++++|.+ |++++.|+.
T Consensus 168 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~ 229 (243)
T TIGR01978 168 LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV 229 (243)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence 99999999999999999999999877999999999975 45555 799999974 789888864
No 226
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-36 Score=333.95 Aligned_cols=204 Identities=26% Similarity=0.328 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 259 (1119)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 35999999999999999999999999999999999999886 9999999998764322 356999999963 4456
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|.....+.. . ......++.+++.+||++..++.+.+
T Consensus 95 ~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~~-- 138 (274)
T PRK13647 95 STVWDDVAFGPVNMGLD----------K------------------------DEVERRVEEALKAVRMWDFRDKPPYH-- 138 (274)
T ss_pred CcHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHHHhcCChhh--
Confidence 89999998854321110 0 00112356788999999888888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.|++++.|++ .++.++||+|++|++
T Consensus 139 ---LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~-~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 139 ---LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDV-DLAAEWADQVIVLKE 213 (274)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999764 78888877764 477789999999999
Q ss_pred CeEEEEcChhHH
Q 001228 420 GQIVYQGPRDNV 431 (1119)
Q Consensus 420 G~iv~~G~~~~~ 431 (1119)
|+++++|+++++
T Consensus 214 G~i~~~g~~~~~ 225 (274)
T PRK13647 214 GRVLAEGDKSLL 225 (274)
T ss_pred CEEEEECCHHHh
Confidence 999999998654
No 227
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-36 Score=334.50 Aligned_cols=201 Identities=22% Similarity=0.321 Sum_probs=170.3
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCC-CCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDI-HSPY 954 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~-~~~~ 954 (1119)
+.+|+||||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++.. ...++.+||++|++. .+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 459999999999999999999999999999999999866 458999999987632 234567999999975 3567
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
.|+.||+.+..... ........+.+.++++.++|.+..+.. +..||+|||||++|||||+.+|+||||||||
T Consensus 93 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 93 RTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred chHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998765322 123344456688999999998877765 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.++..+++.|+++.++|.|||++||+++ ++ ..||++++|.+ |++++.|+..
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~ 220 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEPE 220 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999877999999999975 34 66999999975 7899888753
No 228
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=7.6e-36 Score=322.68 Aligned_cols=198 Identities=31% Similarity=0.451 Sum_probs=168.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCCCCCCCCH
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999886 99999999887542 124679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+.. . . +....++++++.+||++..++.+++
T Consensus 96 ~e~l~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------G----------D--------------ELTARLEELADRLGMEELLDRRVGG----- 136 (218)
T ss_pred HHHHHHHHHHcCCC----------H----------H--------------HHHHHHHHHHHHcCCHHHHhhhhhh-----
Confidence 99998754322110 0 0 0112356788999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 477888887766 478899999999999999
Q ss_pred EEEc
Q 001228 423 VYQG 426 (1119)
Q Consensus 423 v~~G 426 (1119)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
No 229
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-36 Score=333.93 Aligned_cols=229 Identities=28% Similarity=0.382 Sum_probs=181.6
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRV-------------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEE-------------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 46777776543 23469999999999999999999999999999999999865 4589999999765
Q ss_pred C---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 N---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
. ...+++.++|++|++.+++.+|+.||+.+....... .........+.++++++.+++.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 3 233456799999998888889999999875321110 00111223456788999999987666663 47999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|.+ |++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 56678999999975 78988
Q ss_pred ecCCCC--ChHHHHHHhh
Q 001228 1089 AGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1089 ~g~~~~--~~~~l~~~f~ 1104 (1119)
.|+..+ ....+.++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~ 246 (265)
T PRK10575 229 QGTPAELMRGETLEQIYG 246 (265)
T ss_pred ecCHHHhcCHHHHHHHhC
Confidence 887543 2223455554
No 230
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-36 Score=322.45 Aligned_cols=198 Identities=26% Similarity=0.365 Sum_probs=167.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 45999999999999999999999999999999999999886 9999999987654 2346799999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.+.....+... .+ ....++++++.+||++..++.+++ |
T Consensus 89 e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK--------------------EE--------------ARRRIDEWLERLELSEYANKRVEE-----L 129 (210)
T ss_pred HHHHHHHHHcCCCh--------------------HH--------------HHHHHHHHHHHcCChHHHhCcHhh-----C
Confidence 99987544321100 00 012346688999999888888776 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv 423 (1119)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. +.|++++.|++ .++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQM-ELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCH-HHHHHhhhEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999998753 67887777665 4788899999999999998
Q ss_pred EEc
Q 001228 424 YQG 426 (1119)
Q Consensus 424 ~~G 426 (1119)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
No 231
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-36 Score=323.03 Aligned_cols=194 Identities=26% Similarity=0.360 Sum_probs=163.0
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHHHHHH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLY 963 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~ 963 (1119)
|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 458999999987632 1234679999999999899999999987
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1043 (1119)
....+. .. .+..++.+.++++.+++.+..++. +..||+|||||++|||||+.+|++|||||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 532211 11 123345688999999998777765 3479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1044 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1044 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
.+++.|+++++ .|+|||++||+++ ++.+.||++++|.+ |++++.|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999875 4899999999975 46677999999975 7877653
No 232
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=1.8e-34 Score=361.61 Aligned_cols=124 Identities=24% Similarity=0.313 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC---CeEE
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVANP---SIIF 1029 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p---~ill 1029 (1119)
.+|+.|++.|...+. . .....+.++.++|..+ .++. +..||||||||+.||++|+.+| +++|
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 368888888765432 1 1124578999999753 4554 3579999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ....+|+++.|. ++|++++.|+..
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999974 456899999994 579999999753
No 233
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6.7e-36 Score=343.66 Aligned_cols=205 Identities=22% Similarity=0.325 Sum_probs=174.9
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc----cCC---hhh---h-cceEEEE
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY----PKN---QET---F-ARVSGYC 945 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~----~~~---~~~---~-~~~~gy~ 945 (1119)
++...+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++|. ++. ... + ++.++|+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 345679999999999999999999999999999999999876 45899999995 221 111 2 2479999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001228 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1119)
Q Consensus 946 ~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 1025 (1119)
+|++.+++..||+||+.|+...+ .....+..+.+.++++.++|.+..+..+ .+||||||||++|||||+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999875443 2234455567899999999988877764 479999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1026 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1026 ~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999999999999765 999999999975 56788999999975 7899988854
No 234
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-36 Score=334.20 Aligned_cols=201 Identities=25% Similarity=0.370 Sum_probs=168.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCCC-CC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH-SP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~-~~ 953 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.. ..
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 459999999999999999999999999999999999876 458999999987531 2345679999999753 34
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..|+.||+.+..... .....+..+.+.++++.+++.+..++. +..||||||||++|||+|+.+|+|||||||
T Consensus 92 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 92 YTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 568999998764332 122333445678899999998776665 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+|||+.++..+.+.|+++.++|.|||++||+++ .+...+|++++|.+ |++++.|+.
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP 220 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999877999999999975 46678999999975 789988875
No 235
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.7e-36 Score=369.84 Aligned_cols=207 Identities=26% Similarity=0.364 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++++||+.++|+||||||||||+++|+|.+ |. +|+|.+||+++.+... ++.++||+|++.+|+.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 35899999999999999999999999999999999999 75 8999999999877653 5789999999999975
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++.. +.+.++..+++...+ .+..+ -.|++..||.||+. +
T Consensus 438 TI~eNI~~g~~-------------------------~~~~eei~~al~~a~------l~~~i--~~lp~G~dT~vge~-G 483 (588)
T PRK11174 438 TLRDNVLLGNP-------------------------DASDEQLQQALENAW------VSEFL--PLLPQGLDTPIGDQ-A 483 (588)
T ss_pred CHHHHhhcCCC-------------------------CCCHHHHHHHHHHhC------HHHHH--HhcccccccccccC-C
Confidence 99999988521 111122222222111 11222 24677889999974 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..||||||||++||||++.+|+||+||||||+||+.+...|.+.|+++.+ ++|+|+..|++ +..+.||+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl--~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQL--EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCh--HHHHhCCEEEEEeCC
Confidence 56999999999999999999999999999999999999999999998753 78999998887 567889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++.+|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999999864
No 236
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-37 Score=306.27 Aligned_cols=225 Identities=24% Similarity=0.382 Sum_probs=193.7
Q ss_pred cccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---hhhhcceEEEEcc
Q 001228 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQ 947 (1119)
Q Consensus 871 ~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gy~~q 947 (1119)
++.++.++.+.+|++||+.|++|.+++|+|||||||||||.+++++.. ..+|+|.++|.++. ...+++.++.+-|
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ 82 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQ 82 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHh
Confidence 344556677889999999999999999999999999999999998765 45899999998863 3567888888999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 948 NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 948 ~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
+......+||+|-+.|+..-... ....++....++++++.++|+++.|+.. .+||||||||..||+.++++.+.
T Consensus 83 ~N~i~~rlTV~dLv~FGRfPYSq-GRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 83 ENHINSRLTVRDLVGFGRFPYSQ-GRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred hchhhheeEHHHHhhcCCCcccC-CCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcE
Confidence 98888899999999998543322 2334556678999999999999999984 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
++||||.++||......+|+.+++++++ |+|||++.||.+. ....+|+++.|++ |+++..|+..+ ..+.|.+.|+
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~eii~~~~L~eiyd 234 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDEIIQPEILSEIYD 234 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHHhcCHHHHHHHhc
Confidence 9999999999999999999999999876 9999999999764 4456799999975 89999999875 5567888888
Q ss_pred h
Q 001228 1105 V 1105 (1119)
Q Consensus 1105 ~ 1105 (1119)
-
T Consensus 235 m 235 (252)
T COG4604 235 M 235 (252)
T ss_pred C
Confidence 4
No 237
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-36 Score=333.61 Aligned_cols=229 Identities=22% Similarity=0.292 Sum_probs=183.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++ +..+|+||||+|++||+++|+|+||||||||+++|+|..+ +..|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 467777776542 3469999999999999999999999999999999999865 4589999999875
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ..+++.++|++|++..++..|++||+.+....... .....+...+.++++++.+++.+..++. +..||+
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 23456799999999988889999999765211100 0001123345678999999998776665 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...||++++|.+ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999975 57788999999975 78999
Q ss_pred ecCCCC--ChHHHHHHhh
Q 001228 1089 AGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1089 ~g~~~~--~~~~l~~~f~ 1104 (1119)
.|+..+ ....+.++|.
T Consensus 225 ~g~~~~~~~~~~~~~~~~ 242 (265)
T PRK10253 225 QGAPKEIVTAELIERIYG 242 (265)
T ss_pred eCCHHHHhhHHHHHHHhC
Confidence 887543 1223455554
No 238
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.6e-36 Score=332.17 Aligned_cols=219 Identities=29% Similarity=0.391 Sum_probs=176.0
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEECCccCCh--------hhhcceEEEEccCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKNQ--------ETFARVSGYCEQND 949 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~~~~--------~~~~~~~gy~~q~~ 949 (1119)
+..+|+|+||+|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.++.. ...++.++|++|++
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 356999999999999999999999999999999999986532 136999999987532 22355799999999
Q ss_pred CCCCCCCHHHHHHHHHHhhcC-----CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001228 950 IHSPYVTVYESLLYSAWLRLS-----SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024 (1119)
Q Consensus 950 ~~~~~~tv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 1024 (1119)
.+++.+|++||+.+....... ...........+.++++.+++.+..++. +..||+|||||++|||||+.+
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~ 170 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----VSTLSGGQQQRVAIARALMQQ 170 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----ccccCHHHHHHHHHHHHHhcC
Confidence 988999999999875321000 0111223345688999999998776765 357999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC-ChHHHHHH
Q 001228 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH-ESHKLIEY 1102 (1119)
Q Consensus 1025 p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~-~~~~l~~~ 1102 (1119)
|++|||||||+|||+.++..+++.|+++.+ .|.|||++||+++ .+...||++++|.+ |++++.|+... ....+.+.
T Consensus 171 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~~~~~~~~~~~ 248 (262)
T PRK09984 171 AKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSSQQFDNERFDHL 248 (262)
T ss_pred CCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHhccHHHHHH
Confidence 999999999999999999999999999975 4899999999975 46788999999975 78899888643 23345555
Q ss_pred hh
Q 001228 1103 FE 1104 (1119)
Q Consensus 1103 f~ 1104 (1119)
|.
T Consensus 249 ~~ 250 (262)
T PRK09984 249 YR 250 (262)
T ss_pred Hh
Confidence 55
No 239
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=6.4e-36 Score=320.79 Aligned_cols=195 Identities=29% Similarity=0.418 Sum_probs=167.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-cccceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-VPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999886 99999999876532 124579999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+. ....++.+++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG----- 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh-----
Confidence 9999875432110 011245678899998888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876 477888887665 477789999999999999
Q ss_pred EEEc
Q 001228 423 VYQG 426 (1119)
Q Consensus 423 v~~G 426 (1119)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
No 240
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=9.8e-36 Score=342.29 Aligned_cols=208 Identities=23% Similarity=0.299 Sum_probs=177.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc----cCCCCcc-------cceEEEe
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH----ELNEFVP-------QRTCAYI 250 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~----~~~~~~~-------~~~~~yv 250 (1119)
....+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999987 999999996 3322211 2469999
Q ss_pred ccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc
Q 001228 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (1119)
Q Consensus 251 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 330 (1119)
+|+..+++.+||+||+.|+....+... . +....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------~------------------------~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------A------------------------ERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCchh
Confidence 999999999999999998754332110 0 011235678999999988
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh
Q 001228 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (1119)
Q Consensus 331 ~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 410 (1119)
.|+.+++ |||||||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.+..++|+|++.|+. .++.++
T Consensus 158 ~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l 231 (382)
T TIGR03415 158 ADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKI 231 (382)
T ss_pred hcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHh
Confidence 8888887 9999999999999999999999999999999999999999999999876678888887765 588899
Q ss_pred cCeEEEEcCCeEEEEcChhHHH
Q 001228 411 FDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 411 ~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
No 241
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-35 Score=321.68 Aligned_cols=213 Identities=18% Similarity=0.278 Sum_probs=158.9
Q ss_pred cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECC
Q 001228 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930 (1119)
Q Consensus 851 ~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g 930 (1119)
.|..+..+||+|.++ +.+.++++++|-|.--..++||||||.||||||++|.|..++ ..|+..-+
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn- 647 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN- 647 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc-
Confidence 455667777776543 345689999999999999999999999999999999997763 46665422
Q ss_pred ccCChhhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCC
Q 001228 931 YPKNQETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 931 ~~~~~~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 1008 (1119)
.+-+||+.-|... +...-|.-|.|.-.. +.+. +.+...|-.+||...++..- +..||
T Consensus 648 -------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpy----q~ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 648 -------HRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPY----QEARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred -------ceeeeechhhhhHHhhccccCHHHHHHHhc------CCCh----HHHHHHhhhhhhhhccceEe----eeecC
Confidence 1235888877543 334457777664221 1222 22456788899987776652 56799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||+-||++|-.-+..|+||||||||++||.++...+-++|+++ ...||+++||-.+ +.+.-+.++++.+.|.-..
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhc
Confidence 99999999999999999999999999999999999999999987 4689999999653 5566678888888776666
Q ss_pred ecCCCCChHHHHHHh
Q 001228 1089 AGPLGHESHKLIEYF 1103 (1119)
Q Consensus 1089 ~g~~~~~~~~l~~~f 1103 (1119)
+|....-..++.+..
T Consensus 783 dGdFeDYkkEVLdaL 797 (807)
T KOG0066|consen 783 DGDFEDYKKEVLDAL 797 (807)
T ss_pred cccHHHHHHHHHHHH
Confidence 777654444444433
No 242
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.3e-36 Score=321.32 Aligned_cols=192 Identities=28% Similarity=0.343 Sum_probs=162.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCC-CCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDL-HHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 46999999999999999999999999999999999999886 9999999988754333467999999974 3446799
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+ . ....++.+++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~----------------------~----------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (205)
T cd03226 90 REELLLGLKELD----------------------A----------------GNEQAETVLKDLDLYALKERHPLS----- 126 (205)
T ss_pred HHHHhhhhhhcC----------------------c----------------cHHHHHHHHHHcCCchhcCCCchh-----
Confidence 999987532110 0 001245688999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYE-FLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999875 3778888877664 67789999999999987
Q ss_pred E
Q 001228 423 V 423 (1119)
Q Consensus 423 v 423 (1119)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
No 243
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=8.5e-36 Score=323.95 Aligned_cols=204 Identities=34% Similarity=0.514 Sum_probs=170.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC---CCCCcceEEEECCccCCCCcccceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG---KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~---~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 259 (1119)
.+++|+|+|+++++|++++|+||||||||||+++|+|.++ ++ +|+|.++|+++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3569999999999999999999999999999999999998 65 99999999887543445679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHH-HHHHcCCcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY-VLKILGLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~ 338 (1119)
+||+||+.|+.......... .+. .....+. .++.+++++..++.+++
T Consensus 96 ~tv~enl~~~~~~~~~~~~~------------------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~- 143 (226)
T cd03234 96 LTVRETLTYTAILRLPRKSS------------------DAI-------------RKKRVEDVLLRDLALTRIGGNLVKG- 143 (226)
T ss_pred CcHHHHHHHHHHhhcccccc------------------hHH-------------HHHHHHHHHHHhhcchhhhcccccC-
Confidence 99999999865432110000 000 0011233 78888988777777766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. +.|++++.|++..++.++||++++|+
T Consensus 144 ----LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 144 ----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred ----cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999998754 78999998888668999999999999
Q ss_pred CCeEEEEc
Q 001228 419 EGQIVYQG 426 (1119)
Q Consensus 419 ~G~iv~~G 426 (1119)
+|+++++|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999876
No 244
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1e-35 Score=323.82 Aligned_cols=213 Identities=25% Similarity=0.360 Sum_probs=172.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++.. .....+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 46778877654310 001259999999999999999999999999999999999865 4589999999875
Q ss_pred Chh---h---h-cceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCC
Q 001228 934 NQE---T---F-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1119)
Q Consensus 934 ~~~---~---~-~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 1006 (1119)
... . . ++.++|++|++.+++.+|+.||+.+....+. .......+.+.++++.+++.+..++. +..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHL-----PAQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCC-----hhh
Confidence 321 1 1 2579999999988899999999987653321 22334456688999999998776665 347
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|++++|.+ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999975 34 56999999975 77
Q ss_pred EEE
Q 001228 1086 VIY 1088 (1119)
Q Consensus 1086 v~~ 1088 (1119)
+++
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 764
No 245
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.7e-36 Score=320.20 Aligned_cols=191 Identities=24% Similarity=0.355 Sum_probs=161.9
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---h----hhhcceEEEEccCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---Q----ETFARVSGYCEQNDI 950 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~----~~~~~~~gy~~q~~~ 950 (1119)
+++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++. . ...++.++|++|++.
T Consensus 9 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (206)
T TIGR03608 9 GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA 86 (206)
T ss_pred CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh
Confidence 34569999999999999999999999999999999999876 45899999998742 1 124567999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+++..|++||+.+..... ........+.++++++.+++.+..++. +.+||+|||||++|||||+.+|++|||
T Consensus 87 ~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 87 LIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred hccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 888999999998865432 122334455688999999998777766 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
||||+|||+.+++.+.+.|+++.++|.|||++||+++ ....||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999999999999999999998777999999999974 45678998764
No 246
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.7e-36 Score=325.10 Aligned_cols=204 Identities=23% Similarity=0.340 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc-----CCCCCcceEEEECCccCCCCc-----ccceEEEeccC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-----GKDLRASGKITYCGHELNEFV-----PQRTCAYISQH 253 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~-----~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~ 253 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 36999999999999999999999999999999999998 775 999999998875432 24579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc
Q 001228 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1119)
Q Consensus 254 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 333 (1119)
+.++ .+||+||+.++.+..+... .+ +....++.+++.+||++..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~--------------------~~-------------~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL--------------------KE-------------ELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc--------------------HH-------------HHHHHHHHHHHHcCCChHHhc
Confidence 8888 7999999988644321000 00 001234668889999877666
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+. .+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .|+|++.|++ .++.++||+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~-~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNM-QQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccH-HHHHHhCCE
Confidence 540 1349999999999999999999999999999999999999999999998763 6777777665 478889999
Q ss_pred EEEEcCCeEEEEcChhH
Q 001228 414 IILLSEGQIVYQGPRDN 430 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~ 430 (1119)
+++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998765
No 247
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-36 Score=334.33 Aligned_cols=200 Identities=25% Similarity=0.369 Sum_probs=166.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccCC--CC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQND--IH 951 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~~--~~ 951 (1119)
.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++ .+
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 59999999999999999999999999999999999865 458999999987532 23456799999997 34
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
++ .|++||+.+..... ....+...+.++++++.++|. ...++. +..||+|||||++|||||+.+|++|||
T Consensus 99 ~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllL 169 (280)
T PRK13649 99 FE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----PFELSGGQMRRVAIAGILAMEPKILVL 169 (280)
T ss_pred cc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 44 69999998764322 122333445678899999996 345554 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||+|||+.+++.+.+.|++++++|+|||++||+++ ++...+|++++|.+ |++++.|+..
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (280)
T PRK13649 170 DEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKPK 230 (280)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999877999999999975 46678999999975 7888888753
No 248
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=329.56 Aligned_cols=217 Identities=21% Similarity=0.298 Sum_probs=175.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1119)
++++|+++.++ +..+|+|+||+|++||++||+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 5 l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 5 IDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred EEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 56677765442 346999999999999999999999999999999999976432 25899999998
Q ss_pred cCC-----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCC
Q 001228 932 PKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLP 1002 (1119)
Q Consensus 932 ~~~-----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~ 1002 (1119)
++. ....++.++|++|++.+++.+||+||+.+....+. .......++.++++++.+++.+ ..++.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 145 (258)
T PRK14241 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP---- 145 (258)
T ss_pred eccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC----
Confidence 753 12345679999999999999999999987654321 1123344556788999998842 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK- 1081 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~- 1081 (1119)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 146 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~ 222 (258)
T PRK14241 146 -GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNL 222 (258)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEec
Confidence 457999999999999999999999999999999999999999999999864 799999999975 5667899999997
Q ss_pred ----cCcEEEEecCCC
Q 001228 1082 ----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ----~gG~v~~~g~~~ 1093 (1119)
+.|++++.|+..
T Consensus 223 ~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 223 EATGKPGRLVEIDDTE 238 (258)
T ss_pred ccCCCCceEEecCCHH
Confidence 258999998753
No 249
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=324.10 Aligned_cols=201 Identities=19% Similarity=0.289 Sum_probs=168.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999886 9999999998765432 2469999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||+||+.|.....+.. .. +....++.+++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKK----------PA------------------------EINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999998864322100 00 001234668899999888888776
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+||++++.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. +|++++
T Consensus 145 ~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~ 217 (233)
T PRK11629 145 E-----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLE 217 (233)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEE
Confidence 6 99999999999999999999999999999999999999999999987655788888888764 4544 689999
Q ss_pred EcCCeEEEEcCh
Q 001228 417 LSEGQIVYQGPR 428 (1119)
Q Consensus 417 L~~G~iv~~G~~ 428 (1119)
|++|+++..|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988864
No 250
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-36 Score=333.90 Aligned_cols=215 Identities=26% Similarity=0.316 Sum_probs=177.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.++. ..+.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 567777654421 12359999999999999999999999999999999999876 45899999998764
Q ss_pred h---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 935 Q---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
. ...++.+||++|++. .++..||.||+.+..... ....++..+.+.++++.++|.+..++.+ ..||+|
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHH
Confidence 3 234567999999974 566789999998865332 1233444566899999999988777763 479999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ .+ ..||++++|.+ |++++.
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~~ 221 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILEE 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999875 899999999975 34 46999999975 789998
Q ss_pred cCCC
Q 001228 1090 GPLG 1093 (1119)
Q Consensus 1090 g~~~ 1093 (1119)
|+..
T Consensus 222 g~~~ 225 (279)
T PRK13635 222 GTPE 225 (279)
T ss_pred CCHH
Confidence 8753
No 251
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-36 Score=329.31 Aligned_cols=216 Identities=23% Similarity=0.295 Sum_probs=173.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1119)
.+.++|+++.++ +..+|+||||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 467888776442 235999999999999999999999999999999999976531 2479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC----CccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++ .||+||+.+....... .......+.+.++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234667999999988774 8999999886533211 12233445678888988873 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||||||||++|||+|+.+|++|||||||+|||+.++..+++.|+++. +++|||++||+++ .+.+.+|++++|.
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999996 4799999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |+++..|+..
T Consensus 224 ~-G~i~~~g~~~ 234 (254)
T PRK14273 224 N-GCIEEESSTD 234 (254)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999888753
No 252
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=332.83 Aligned_cols=205 Identities=20% Similarity=0.296 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCC--
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHD-- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d-- 254 (1119)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+|||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999987 99999999987542 1245799999986
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 333 (1119)
.+++ .||.||+.|+....+.. .. +....++++++.+||+ +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMN----------LD------------------------EVKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhhhC
Confidence 4555 59999998864321100 00 0112356788999997 67777
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+.+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++....+.|++++.|+. .++.+++|+
T Consensus 142 ~~~~-----LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dr 215 (286)
T PRK13646 142 SPFQ-----MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADE 215 (286)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCE
Confidence 7766 9999999999999999999999999999999999999999999999765577888887765 478899999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
No 253
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=331.34 Aligned_cols=202 Identities=26% Similarity=0.347 Sum_probs=169.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCC-CCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDI-HSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~-~~~ 953 (1119)
+.+|+||||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++.. ...++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 359999999999999999999999999999999999865 458999999987631 134567999999973 334
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..||.||+.+..... .....+..+.+.++++.++|.++.++.+ ..||+|||||++|||||+.+|++|+||||
T Consensus 93 ~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 93 APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 579999998754321 1223344456889999999988777763 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+|||+.++..+++.|+++.++|.|||++||+++ ++...||++++|++ |++++.|+..
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTPK 222 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999877999999999975 46678999999975 7899888754
No 254
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-36 Score=347.32 Aligned_cols=216 Identities=27% Similarity=0.445 Sum_probs=180.7
Q ss_pred cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECC
Q 001228 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930 (1119)
Q Consensus 851 ~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g 930 (1119)
.+..+..+|++|.++ +++++++|+||++++|+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 345566668877654 22379999999999999999999999999999999999877 3589999999
Q ss_pred ccC---ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCC-----C
Q 001228 931 YPK---NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL-----P 1002 (1119)
Q Consensus 931 ~~~---~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 1002 (1119)
.+. +...+++.++|++|+|.+++. |++||+.++.. +. .++.+.++++..++.++.+...|. +
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DA----SDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cC----CHHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 875 456788999999999998765 99999987521 11 234578889999888776652222 2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..+|||||+|||++||||+.+++++++||||++||+++.++|++.|.++++ ++|||++||++ .....+|+|++|++
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl--~~~~~~D~I~vld~ 529 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL--EDAADADRIVVLDN 529 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcCh--HHHhcCCEEEEecC
Confidence 4568999999999999999999999999999999999999999999999986 59999999996 46778999999975
Q ss_pred CcEEEEecCCCC
Q 001228 1083 GGRVIYAGPLGH 1094 (1119)
Q Consensus 1083 gG~v~~~g~~~~ 1094 (1119)
|++++.|...+
T Consensus 530 -G~l~~~g~~~~ 540 (559)
T COG4988 530 -GRLVEQGTHEE 540 (559)
T ss_pred -CceeccCCHHH
Confidence 89999997643
No 255
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=8.2e-36 Score=330.22 Aligned_cols=206 Identities=31% Similarity=0.411 Sum_probs=170.9
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+..+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++|.++.. ...++.++|++|++..++..
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 3569999999999999999999999999999999999865 457999999987532 23445699999998777889
Q ss_pred CHHHHHHHHHH-hhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 956 TVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 956 tv~e~l~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
||.||+.+... .+...........+.+.++++.+++.+..++. +..||+|||||++|||||+.+|++++|||||
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 165 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRVHVARALAQEPKLLLLDEPT 165 (256)
T ss_pred CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99999987531 11000011122345678999999998777766 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.+...+++.|+++.++|.|||++||+++ .+.+.||++++|++ |++++.|+..
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (256)
T TIGR03873 166 NHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR 222 (256)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence 999999999999999999877899999999986 56688999999975 7888888754
No 256
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.5e-35 Score=323.86 Aligned_cols=202 Identities=30% Similarity=0.423 Sum_probs=167.8
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEc-cCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCE-QNDIHSP 953 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~-q~~~~~~ 953 (1119)
++.+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++ |.+.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 345679999999999999999999999999999999999865 458999999976422 23456799997 5566778
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
.+|++|++.+...++. ....+..+.+.++++.+++.+..++.+ ..||+|||||++||++|+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8999999987654331 222334456788999999987777653 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+|||+.+++.+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999998764 899999999975 46678999999975 7887654
No 257
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=326.13 Aligned_cols=217 Identities=26% Similarity=0.375 Sum_probs=174.2
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC---CCeeEEEEEE
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKI 928 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~---~g~~~G~i~i 928 (1119)
|..+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... ..+.+|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34578888876542 2359999999999999999999999999999999999742 1135799999
Q ss_pred CCccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----ccccc
Q 001228 929 SGYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMV 999 (1119)
Q Consensus 929 ~g~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~ 999 (1119)
+|.++.. ..+++.++|++|++.+++ .|++||+.+....+.. ...+...+.+.++++.+++.+. .++.
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHES- 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhCC-
Confidence 9987632 234567999999988887 5999999886543211 1122334567888999988542 2332
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeE
Q 001228 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1079 (1119)
Q Consensus 1000 ~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~ 1079 (1119)
+..||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++. +|+|||++||+++ ++...||++++
T Consensus 147 ----~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~ 220 (253)
T PRK14242 147 ----ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAF 220 (253)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEE
Confidence 45799999999999999999999999999999999999999999999985 4799999999975 46678999999
Q ss_pred EecCcEEEEecCC
Q 001228 1080 LKRGGRVIYAGPL 1092 (1119)
Q Consensus 1080 l~~gG~v~~~g~~ 1092 (1119)
|.+ |++++.|+.
T Consensus 221 l~~-G~i~~~g~~ 232 (253)
T PRK14242 221 FYM-GKLIEVGPT 232 (253)
T ss_pred EEC-CEEEEeCCH
Confidence 975 789888874
No 258
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=327.89 Aligned_cols=220 Identities=20% Similarity=0.282 Sum_probs=176.7
Q ss_pred ccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEE
Q 001228 850 FQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDI 926 (1119)
Q Consensus 850 ~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i 926 (1119)
..+..++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|
T Consensus 9 ~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 9 TAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred CCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 3445678888876542 2359999999999999999999999999999999999753 1 1357999
Q ss_pred EECCccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----cccc
Q 001228 927 KISGYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDS 997 (1119)
Q Consensus 927 ~i~g~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~ 997 (1119)
.++|.++.. ..+++.++|++|++.+++ .|++||+.+...... ........+.++++++.+++.+ ..++
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred EECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhc
Confidence 999987531 234667999999988777 899999987643221 1223334456889999999843 2333
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 998 ~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
. +.+||+|||||++|||||+.+|+||||||||+|||+.++..+.+.|+++. ++.|||++||+++ ++...+|++
T Consensus 153 ~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i 225 (260)
T PRK10744 153 S-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYT 225 (260)
T ss_pred C-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEE
Confidence 3 45799999999999999999999999999999999999999999999986 4789999999975 466789999
Q ss_pred eEEecCcEEEEecCCC
Q 001228 1078 LLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1078 l~l~~gG~v~~~g~~~ 1093 (1119)
++|++ |+++..|+..
T Consensus 226 ~~l~~-G~i~~~g~~~ 240 (260)
T PRK10744 226 AFMYL-GELIEFGNTD 240 (260)
T ss_pred EEEEC-CEEEEeCCHH
Confidence 99975 8899888743
No 259
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=9.6e-36 Score=324.13 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=165.7
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHH
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLL 962 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~ 962 (1119)
|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.... ...+|++|++.+++.+|+.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 45899999998764321 12489999999999999999998
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001228 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042 (1119)
Q Consensus 963 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~ 1042 (1119)
+...... .........+.+.++++.+++.+..++. +..||||||||++|||+|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7532111 1222334455678899999998776665 357999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1043 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1043 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+.+.+.|++++++ |+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999975 56778999999975 788888764
No 260
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=344.15 Aligned_cols=209 Identities=25% Similarity=0.408 Sum_probs=176.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999986 999999999876543 246799999999998899
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.++..-... ++.. +. ......++++++.+||.+..++.+.+
T Consensus 93 tv~e~v~~~~~~~~~--~~~~--------------~~--------------~~~~~~v~~~le~vgl~~~~~~~~~~--- 139 (402)
T PRK09536 93 DVRQVVEMGRTPHRS--RFDT--------------WT--------------ETDRAAVERAMERTGVAQFADRPVTS--- 139 (402)
T ss_pred CHHHHHHhccchhcc--cccC--------------CC--------------HHHHHHHHHHHHHcCCchhhcCChhh---
Confidence 999999885321100 0000 00 00122467789999999888888876
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||.||+||+.+|++|||||||+|||+.++.++.+.|+++++ .+.|+|+++|+ ..++.++||++++|++|
T Consensus 140 --LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd-l~~~~~~adrii~l~~G 215 (402)
T PRK09536 140 --LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD-LDLAARYCDELVLLADG 215 (402)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999986 47787777665 46888999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+++++.
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998864
No 261
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-36 Score=331.13 Aligned_cols=219 Identities=25% Similarity=0.374 Sum_probs=174.5
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC------eeEEEEEECCccCCh---hhhcceEEEEccCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YIEGDIKISGYPKNQ---ETFARVSGYCEQND 949 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g------~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~ 949 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.+... ..+++.++|++|++
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 356999999999999999999999999999999999976531 127999999987532 33456689999998
Q ss_pred CCCCCCCHHHHHHHHHHhhc-CCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh------
Q 001228 950 IHSPYVTVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV------ 1022 (1119)
Q Consensus 950 ~~~~~~tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~------ 1022 (1119)
..++.+|++||+.+...... .......+..+.++++++.+++.+..++. +..||+|||||++|||+|+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~~~~~ 167 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGELARVQFARVLAQLWPPH 167 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcccccc
Confidence 76667999999987532111 00111123345678899999998776665 4579999999999999999
Q ss_pred ---cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--Ch
Q 001228 1023 ---ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ES 1096 (1119)
Q Consensus 1023 ---~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~ 1096 (1119)
.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...||++++|.+ |++++.|+... ..
T Consensus 168 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 168 DAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPADVLTP 245 (272)
T ss_pred ccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHHHHcCH
Confidence 599999999999999999999999999998765 899999999975 56678999999975 78998887543 22
Q ss_pred HHHHHHhh
Q 001228 1097 HKLIEYFE 1104 (1119)
Q Consensus 1097 ~~l~~~f~ 1104 (1119)
..+.++|+
T Consensus 246 ~~~~~~~~ 253 (272)
T PRK13547 246 AHIARCYG 253 (272)
T ss_pred HHHHHHhC
Confidence 33555564
No 262
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.8e-34 Score=362.72 Aligned_cols=210 Identities=28% Similarity=0.340 Sum_probs=176.4
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. +++.+|+|+||+|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 46899999987742 12459999999999999999999999999999999999876 458999999988
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.+|||+|++.+++. |++||+.++.. . .++.++++++..++.+.. |..+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~----~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------L----TLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------C----CHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 45678899999999998765 99999987421 1 134477888888886543 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++ ++|+|++||++ +....+|++++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999886 58999999997 46678999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 660 -G~iv~~G~~~ 669 (686)
T TIGR03797 660 -GRVVQQGTYD 669 (686)
T ss_pred -CEEEEECCHH
Confidence 8999999853
No 263
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.6e-35 Score=318.82 Aligned_cols=198 Identities=24% Similarity=0.303 Sum_probs=166.4
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
+++|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4679999999999999999999999999999999876 458999999987632 2345679999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+.+...... .. .....+.+.++++.+++.+..++. +..||+|||||++|||+|+.+|++|+|||||+|||+.
T Consensus 91 ~~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KL-NAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Cc-cHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 986532211 11 122345678899999998777766 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1041 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|. +|++++.|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999998764 899999999975 4667899999997 488888764
No 264
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-35 Score=332.72 Aligned_cols=205 Identities=23% Similarity=0.354 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC-----------------------
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------------------- 240 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----------------------- 240 (1119)
..+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35899999999999999999999999999999999999987 8999999875421
Q ss_pred ----CcccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchh
Q 001228 241 ----FVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETS 315 (1119)
Q Consensus 241 ----~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1119)
...++.+|||+|++ ..+...||+||+.|+....+.. . .+ ..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------~----------~~--------------~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------K----------EE--------------AK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------H----------HH--------------HH
Confidence 01245799999985 3344579999999864432210 0 00 11
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 001228 316 LVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (1119)
Q Consensus 316 ~~~~~~l~~lgL~-~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~ 394 (1119)
..++.+++.+||+ +..++.+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~ 216 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGK 216 (305)
T ss_pred HHHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 2356788999996 677887776 999999999999999999999999999999999999999999999875 477
Q ss_pred EEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001228 395 TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 395 t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
|+|++.|+. .++.++||+|++|++|+++++|+++++.
T Consensus 217 tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 217 TIILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 877777664 5788999999999999999999998874
No 265
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.5e-35 Score=322.41 Aligned_cols=206 Identities=27% Similarity=0.401 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc--cceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999886 9999999987754321 246999999998888999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+.....+.. .. +....++.+++.+||++..++.+++
T Consensus 91 ~~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~---- 132 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------RA------------------------EARERIAALLARLGLAERADDKVRE---- 132 (236)
T ss_pred HHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhcCChhh----
Confidence 999998754322100 00 0011245678899999888888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. .+|++++|++|+
T Consensus 133 -LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 133 -LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGR 209 (236)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999987645788888887764 454 599999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+.+++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887653
No 266
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-35 Score=314.19 Aligned_cols=182 Identities=45% Similarity=0.746 Sum_probs=156.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 260 (1119)
.+.+|+|+|+++++|++++|+|||||||||||++|+|.+++....+|+|.++|+++... ..++.++|++|++.+++.+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 45799999999999999999999999999999999999983112399999999987643 2346799999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.++++.. .++.+.
T Consensus 99 tv~~~l~~~~~~~---------------------------------------------------------~~~~~~---- 117 (202)
T cd03233 99 TVRETLDFALRCK---------------------------------------------------------GNEFVR---- 117 (202)
T ss_pred cHHHHHhhhhhhc---------------------------------------------------------cccchh----
Confidence 9999997743210 123333
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
.||||||||++||+||+.+|+++||||||+|||+.++..+.+.++++++..+.|+++++||+..++.+++|++++|++|
T Consensus 118 -~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G 196 (202)
T cd03233 118 -GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196 (202)
T ss_pred -hCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECC
Confidence 3999999999999999999999999999999999999999999999876546788888888888999999999999999
Q ss_pred eEEEEc
Q 001228 421 QIVYQG 426 (1119)
Q Consensus 421 ~iv~~G 426 (1119)
++++.|
T Consensus 197 ~i~~~g 202 (202)
T cd03233 197 RQIYYG 202 (202)
T ss_pred EEEecC
Confidence 998765
No 267
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=325.97 Aligned_cols=204 Identities=22% Similarity=0.304 Sum_probs=167.1
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC-CeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~-g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++.. ...++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 4699999999999999999999999999999999997531 2458999999987642 234567999999998887 6
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
|++||+.+....+.... ......+.++++++.+++.+ ..++. +..||+|||||++|||||+.+|+||+||
T Consensus 94 tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLD 167 (246)
T PRK14269 94 SIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQN-----ALALSGGQQQRLCIARALAIKPKLLLLD 167 (246)
T ss_pred cHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999988654331101 12233455788999999953 22332 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+|||+.++..+.+.|+++.+ |+|||++||+++ ++...+|++++|.+ |++++.|+..
T Consensus 168 EP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 226 (246)
T PRK14269 168 EPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGESK 226 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999864 899999999975 46778999999975 8999888743
No 268
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-35 Score=319.27 Aligned_cols=198 Identities=25% Similarity=0.375 Sum_probs=165.2
Q ss_pred ccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccC
Q 001228 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQN 948 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~ 948 (1119)
.++++.+ ||||+|++ |+++|+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|+
T Consensus 9 ~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 83 (214)
T cd03297 9 RLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83 (214)
T ss_pred ecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecC
Confidence 3444545 99999999 9999999999999999999999865 458999999986531 1245679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
+.+++.+|+.||+.+..... .....++.+.++++.+++.+..++. +..||+|||||++|||+|+.+|+||
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 84 YALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred CccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99888999999998764321 1223345678899999998766665 3579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999765 899999999975 46678999999975 7887654
No 269
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.7e-35 Score=324.70 Aligned_cols=205 Identities=20% Similarity=0.336 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-----cccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 258 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 45999999999999999999999999999999999999886 99999999887542 12457999999999999
Q ss_pred CCCHHHHHHHhhhh-cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 259 EMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
.+||+||+.|.... .+.. .. +....++++++.+||++..+..+.+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~ 136 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------KE------------------------EAEKQARELLAKVGLAERAHHYPSE 136 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChHHHhcChhh
Confidence 99999999875321 1100 00 0012346788899998877887766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.++||++++|
T Consensus 137 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l 209 (240)
T PRK09493 137 -----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRLIFI 209 (240)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999875 378888887765 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
No 270
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.3e-35 Score=336.00 Aligned_cols=209 Identities=21% Similarity=0.284 Sum_probs=174.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCC--
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD-- 254 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d-- 254 (1119)
...+|+|||++|++||+++|+|+||||||||+++|+|.++++ +|+|.++|.++.... .++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 356999999999999999999999999999999999999886 999999999876543 235799999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 333 (1119)
.++|.+||.||+.+..+....+ +.+. +....++.+++.+||. +..++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~--------~~~~------------------------~~~~~~~~~l~~vgl~~~~~~~ 157 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPK--------LSRQ------------------------EVKDRVKAMMLKVGLLPNLINR 157 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccC--------CCHH------------------------HHHHHHHHHHHHcCCChHHhcC
Confidence 5888999999998864322100 0000 0112346788999994 46677
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+.+ |||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+..+.|+++++|+ ...+.+++|+
T Consensus 158 ~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd-l~~~~~~~dr 231 (331)
T PRK15079 158 YPHE-----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD-LAVVKHISDR 231 (331)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCE
Confidence 7766 999999999999999999999999999999999999999999999987667777777655 4588889999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
|++|++|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998875
No 271
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-35 Score=322.39 Aligned_cols=201 Identities=27% Similarity=0.399 Sum_probs=171.0
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+.+|+|+||+|++|++++|+|+||||||||+++|+|..+ +..|+|.++|.++... ..++.++|++|++..++.+|+.
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 469999999999999999999999999999999999876 3579999999876431 2346799999999988889999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. .......+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||+|||
T Consensus 91 ~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD 162 (232)
T cd03300 91 ENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162 (232)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654331 22233445678899999998777765 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1039 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+.+++.+++.|+++.++ |+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 163 LKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999764 899999999975 46778999999975 788888763
No 272
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.6e-35 Score=322.06 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=168.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEec-cCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYIS-QHDLHHG 258 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~ 258 (1119)
..+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|++.... ..++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4467999999999999999999999999999999999999886 99999999875332 1245799997 5567788
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.+||+|++.+.....+... . +....++.+++.+||++..|+.+++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~- 153 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------A------------------------RFKKRLDELSELLDLEELLDTPVRQ- 153 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhcCChhh-
Confidence 8999999988644321100 0 0011245678899999989998877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|++++|.
T Consensus 154 ----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~ 228 (236)
T cd03267 154 ----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID 228 (236)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999987655778888877764 7889999999999
Q ss_pred CCeEEEEc
Q 001228 419 EGQIVYQG 426 (1119)
Q Consensus 419 ~G~iv~~G 426 (1119)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
No 273
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.7e-35 Score=329.09 Aligned_cols=203 Identities=24% Similarity=0.339 Sum_probs=168.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh------hhcceEEEEccCC--CC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE------TFARVSGYCEQND--IH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~------~~~~~~gy~~q~~--~~ 951 (1119)
+.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++ .+
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 469999999999999999999999999999999999876 4589999999875421 1356799999997 35
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
.+..|++||+.+...... ........+.+.++++.+++. ...+.. +..||+|||||++|||||+.+|+||||
T Consensus 102 ~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGe~qrv~laral~~~p~illL 174 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PRQLSGGQLQRINIARALAVKPKLIVL 174 (265)
T ss_pred CCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 678999999976543211 122233445688999999995 555655 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||+|||+.++..+.+.|+++.++ |+|||++||+++ .+...+|++++|.+ |++++.|+..
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 236 (265)
T TIGR02769 175 DEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDVA 236 (265)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCHH
Confidence 9999999999999999999999765 899999999975 46668999999975 8999998853
No 274
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=299.44 Aligned_cols=208 Identities=29% Similarity=0.448 Sum_probs=171.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc---ceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 260 (1119)
+.+|++||++++||||++|+|||||||||||++|+|++.|+ +|++.+||++++.+.+. +.-|..+|+..+-...
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45899999999999999999999999999999999999997 99999999999887653 5678999998776667
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+|-+.++..-.+.+.. |. +...+.+..|...++.+.+....-.
T Consensus 91 tv~eVV~mGr~p~~~g~~-----------------~~---------------e~~~i~~~ala~~d~~~la~R~y~~--- 135 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE-----------------PE---------------EDERIAAQALAATDLSGLAGRDYRT--- 135 (259)
T ss_pred EHHHHHHhcccccccCCC-----------------ch---------------hhHHHHHHHHHHcChhhhhccchhh---
Confidence 999999997654322110 10 1122356677788888777666544
Q ss_pred CCCChHHHHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~------~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
|||||||||.+||.|+. ++++||||||||+||...+..++++.|++++. |.. |+.++|...-...+||+|
T Consensus 136 --LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~-V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 136 --LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGA-VLAVLHDLNLAAQYADRI 211 (259)
T ss_pred --cCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCc-EEEEEccchHHHHhhhee
Confidence 99999999999999963 45699999999999999999999999999985 444 445556677888999999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|++|+++..|++++++.
T Consensus 212 vll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 212 VLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eeeeCCeEeecCCHHHhcC
Confidence 9999999999999988753
No 275
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=325.47 Aligned_cols=203 Identities=23% Similarity=0.310 Sum_probs=165.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC---CCCeeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~---~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|.. ++.+.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 46999999999999999999999999999999999952 211247999999987642 2345679999999887
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++ .|+.||+.+....+.. .......+.++++++.+++.+. .++. +..||+|||||++|||+|+.+|+|
T Consensus 96 ~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~l 167 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKES-----AFALSGGQQQRLCIARAMAVSPSV 167 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 76 5999999876443211 1122334567889999998642 2332 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||||+|||+.++..+++.|+++. +++|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 168 llLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~~ 230 (250)
T PRK14245 168 LLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDTK 230 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999985 5899999999975 56678999999975 7899998753
No 276
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-36 Score=295.73 Aligned_cols=200 Identities=28% Similarity=0.430 Sum_probs=176.7
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
.+|+|||++|.+||.+.++||||||||||||+++|..+ +..|.|.+||.++.... ...|.|+|++.++|.+++.||
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~dN 94 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVIDN 94 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCC--ccceeEeccCccchhhHHHHH
Confidence 49999999999999999999999999999999999887 46899999999875433 235899999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+.|+..++ .+.+.++.+.+.+.+.++||.+..++.+ -+||||||||+.|||||+.+|+.|+||||++.||+-
T Consensus 95 vafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~ 166 (259)
T COG4525 95 VAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL 166 (259)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHH
Confidence 99999887 4567788888999999999999888874 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCCC
Q 001228 1041 AAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLG 1093 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~~ 1093 (1119)
+++.+++++-++. ++|+.+++|||+.+ +..-.++++++|.. .|+|+..-+++
T Consensus 167 tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 167 TREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999986 56999999999976 44446799999973 36788766654
No 277
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-35 Score=328.26 Aligned_cols=216 Identities=25% Similarity=0.308 Sum_probs=177.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++. ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4678887765421 11348999999999999999999999999999999999876 4589999999876
Q ss_pred Ch---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 NQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ...++.++|++|++. .++..|+.+|+.+..... ....+...+.++++++.+++.+..+.. +.+||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 32 345667999999985 677789999998764322 122334445678999999998777765 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++. .+|++++|.+ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 344 4999999975 89999
Q ss_pred ecCCC
Q 001228 1089 AGPLG 1093 (1119)
Q Consensus 1089 ~g~~~ 1093 (1119)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 88754
No 278
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-35 Score=324.86 Aligned_cols=217 Identities=21% Similarity=0.291 Sum_probs=174.6
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--CC-eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~g-~~~G~i~i~g 930 (1119)
.++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 356777765432 3459999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++..|+.||+.+...... .......++.+.++++.+++.. ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSN--- 145 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87532 2456779999999999999999999987543221 1122233456788899999854 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ +.|||++||+++ ++.+.||++++|.
T Consensus 146 --~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14256 146 --AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY 221 (252)
T ss_pred --cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999975 689999999975 5667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+|++++.|+..
T Consensus 222 -~G~i~~~~~~~ 232 (252)
T PRK14256 222 -MGDLVECGETK 232 (252)
T ss_pred -CCEEEEeCCHH
Confidence 48999988753
No 279
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.1e-35 Score=320.33 Aligned_cols=195 Identities=25% Similarity=0.362 Sum_probs=164.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999886 999999999875432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.+.....+.. . . +....++.+++.+||++..++.+++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~--~--------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP--P--------R------------------------EIRKRVPAALELVGLSHKHRALPAE 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC--H--------H------------------------HHHHHHHHHHHHcCCHHHhhCChhh
Confidence 9999999998864332110 0 0 0011345688899999888888776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|
T Consensus 137 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l 209 (214)
T cd03292 137 -----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIAL 209 (214)
T ss_pred -----cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999865 377888877765 4777899999999
Q ss_pred cCCeE
Q 001228 418 SEGQI 422 (1119)
Q Consensus 418 ~~G~i 422 (1119)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
No 280
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=335.94 Aligned_cols=226 Identities=23% Similarity=0.249 Sum_probs=180.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.... .. ...+...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~--~~-~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRG--LF-KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCC--cc-ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 4678887765532110 00 00112469999999999999999999999999999999999875 3589999999876
Q ss_pred Ch------hhhcceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCC
Q 001228 934 NQ------ETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGV 1004 (1119)
Q Consensus 934 ~~------~~~~~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~ 1004 (1119)
.. ..+++.++|++|++ .+.|.+|+.+++.+...... .....+..+.+.++++.++|.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 13456799999998 57888999999876543321 2234445567899999999963 45555 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
.+||||||||++|||||+.+|+|||+||||++||+.++..|+++|+++.++ |.|||+||||++ .+...+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999975 45567999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 8999999743
No 281
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=359.79 Aligned_cols=220 Identities=23% Similarity=0.313 Sum_probs=181.3
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|...+++.+|+|.++|.++.
T Consensus 6 l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 6 LEMKNITKTF-------------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred EEEeeeEEEe-------------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5677776543 334699999999999999999999999999999999998654335899999998764
Q ss_pred hh----hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 935 QE----TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~~----~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
.. ..++.+||++|++.+++.+||+||+.+....+...........+.++++++.+++.+..++.+ .+||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (506)
T PRK13549 73 ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLG 147 (506)
T ss_pred CCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHH
Confidence 21 124569999999988899999999988653321111122334456889999999987777763 579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||++|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||++||+++ .+...||++++|.+ |++++.|
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~ 225 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTR 225 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeec
Confidence 999999999999999999999999999999999999999999877999999999975 46678999999975 7899988
Q ss_pred CCCC
Q 001228 1091 PLGH 1094 (1119)
Q Consensus 1091 ~~~~ 1094 (1119)
+..+
T Consensus 226 ~~~~ 229 (506)
T PRK13549 226 PAAG 229 (506)
T ss_pred cccc
Confidence 8654
No 282
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=331.97 Aligned_cols=207 Identities=29% Similarity=0.365 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC--C---cccceEEEeccCCC-CC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--F---VPQRTCAYISQHDL-HH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 257 (1119)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 35999999999999999999999999999999999999886 9999999998742 1 12357999999973 33
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
...||+||+.|.....+.. .. + ....++++++.+||.+..++.+++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~~ 141 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------ED----------E--------------VRKRVDNALKRTGIEHLKDKPTHC 141 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------HH----------H--------------HHHHHHHHHHHCCChhhhhCCccc
Confidence 4579999998754321110 00 0 012356788999999888888877
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.++||++++|
T Consensus 142 -----LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l 215 (283)
T PRK13636 142 -----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVM 215 (283)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999875578888877665 4677899999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988754
No 283
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.7e-35 Score=325.12 Aligned_cols=206 Identities=22% Similarity=0.307 Sum_probs=171.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-----------cccceEEEecc
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----------VPQRTCAYISQ 252 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----------~~~~~~~yv~Q 252 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 35999999999999999999999999999999999999886 99999999887532 12357999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc
Q 001228 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1119)
Q Consensus 253 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 332 (1119)
++.+++.+||+||+.++...... .. . . .....++.+++.+||++..|
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~-~~--------~----------~--------------~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKG-EP--------K----------E--------------EATARARELLAKVGLAGKET 139 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcC-CC--------H----------H--------------HHHHHHHHHHHHcCCcchhh
Confidence 99999999999999875321100 00 0 0 01123456788999988888
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++.+++|
T Consensus 140 ~~~~~-----LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~-~~~~~~~d 212 (250)
T PRK11264 140 SYPRR-----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEM-SFARDVAD 212 (250)
T ss_pred CChhh-----CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcC
Confidence 87776 9999999999999999999999999999999999999999999998753 67887776665 57889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+.+++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
No 284
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-35 Score=335.28 Aligned_cols=221 Identities=19% Similarity=0.261 Sum_probs=176.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC-C-eeEEEEEECCcc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YIEGDIKISGYP 932 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~-g-~~~G~i~i~g~~ 932 (1119)
++++|++..++.. .+...+|+||||+|++||++||+|+||||||||+++|+|...+ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 5677776554311 1124699999999999999999999999999999999997642 2 358999999987
Q ss_pred CCh---hhh----cceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc---cccccC
Q 001228 933 KNQ---ETF----ARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL---NDSMVG 1000 (1119)
Q Consensus 933 ~~~---~~~----~~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~ 1000 (1119)
+.. ..+ ++.++|++|++ .+.|.+|+.+++........ ....++..+.+.++++.++|.+. .++.
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 642 122 23699999998 46788999998876543321 12344556678999999999753 3333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLL 1079 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~ 1079 (1119)
+.+||||||||++|||||+.+|+|||+||||+|||+.++..+++.|+++.+ .|.|||+||||++ .+.+.+|++++
T Consensus 151 ---p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 151 ---PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ---chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999976 4999999999975 45678999999
Q ss_pred EecCcEEEEecCCC
Q 001228 1080 LKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1080 l~~gG~v~~~g~~~ 1093 (1119)
|. +|++++.|+..
T Consensus 227 m~-~G~ive~g~~~ 239 (326)
T PRK11022 227 MY-AGQVVETGKAH 239 (326)
T ss_pred EE-CCEEEEECCHH
Confidence 97 58999998743
No 285
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-35 Score=313.54 Aligned_cols=196 Identities=33% Similarity=0.607 Sum_probs=161.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEECCcc
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 932 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~ 932 (1119)
.++|+|++|.++.+ .+++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999987642 13457999999999999999999999999999999999986522 468999999987
Q ss_pred CCh--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 933 KNQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 933 ~~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
+.. ...++.++|++|++.+++.+||+||+.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 235567999999999999999999998753210 1222 3479999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||++|||||+.+|+||||||||+|||+.+++.+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 677777665532357788999999975 788765
Q ss_pred c
Q 001228 1090 G 1090 (1119)
Q Consensus 1090 g 1090 (1119)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
No 286
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.3e-35 Score=321.17 Aligned_cols=201 Identities=27% Similarity=0.354 Sum_probs=165.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCC--CC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--LH 256 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 256 (1119)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999886 999999999876532 245799999998 46
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMV 335 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 335 (1119)
++.+||+||+.+.....+.... + +. .....+.+++.+||. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~--------------------~-~~-----------~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSK--------------------K-EA-----------RKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcH--------------------H-HH-----------HHHHHHHHHHHCCCChhHhhCCc
Confidence 6789999999875432211000 0 00 001124577888995 5677777
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
++ |||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||+++
T Consensus 144 ~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~ 217 (228)
T cd03257 144 HE-----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVA 217 (228)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEE
Confidence 66 99999999999999999999999999999999999999999999987654788888887764 7778999999
Q ss_pred EEcCCeEEEEc
Q 001228 416 LLSEGQIVYQG 426 (1119)
Q Consensus 416 lL~~G~iv~~G 426 (1119)
+|++|+++.+|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
No 287
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-35 Score=334.35 Aligned_cols=216 Identities=21% Similarity=0.367 Sum_probs=174.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------------------ccc
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------------------VPQ 244 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------------------~~~ 244 (1119)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999987 99999999876432 124
Q ss_pred ceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHH
Q 001228 245 RTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (1119)
Q Consensus 245 ~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (1119)
+.++||+|++ .+++ .||+||+.|+....+.. . . +....++.++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~----------~----------~--------------~~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK----------K----------S--------------EAKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC----------H----------H--------------HHHHHHHHHH
Confidence 6799999986 4565 59999998864321100 0 0 0012346688
Q ss_pred HHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 001228 323 KILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (1119)
Q Consensus 323 ~~lgL~-~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~ 401 (1119)
+.+||+ +..++.+.+ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ .+.|+|++.|
T Consensus 161 ~~~gL~~~~~~~~~~~-----LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtH 234 (320)
T PRK13631 161 NKMGLDDSYLERSPFG-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITH 234 (320)
T ss_pred HHcCCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 999997 456666655 999999999999999999999999999999999999999999999875 4788888777
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001228 402 QPAPETYDLFDDIILLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (1119)
Q Consensus 402 q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (1119)
++ .++.++||+|++|++|++++.|+++++.. .++..|+.+|.
T Consensus 235 d~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 65 46788999999999999999999988742 34455665554
No 288
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.9e-35 Score=340.99 Aligned_cols=194 Identities=26% Similarity=0.406 Sum_probs=167.3
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccCCCCCCCCCH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999876 458999999987532 1345679999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.|+.... ...+..+.++++++.++|.+..++. +.+||||||||++|||||+.+|++|||||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998864321 1223345688999999998877776 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|.+ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999765 899999999975 56778999999975 789888874
No 289
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.4e-35 Score=322.55 Aligned_cols=202 Identities=29% Similarity=0.423 Sum_probs=171.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+.+|+|+||++.+||+++|+|+||||||||+++|+|..+ +..|+|.++|.++... ..++.++|++|++.+++..|+.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 469999999999999999999999999999999999865 4589999999876432 2346799999999988899999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. .......+.++++++.+++.+..++.. ..||+||+||++|||+|+.+|++++|||||+|||
T Consensus 91 enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 91 DNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred HHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654321 122333456789999999987777653 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1039 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+.++..+.+.|+++.++ |+|||++||+++ ++.+.||++++|. +|++++.|+..
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 216 (237)
T TIGR00968 163 AKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSPD 216 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCHH
Confidence 99999999999998765 899999999975 4677899999997 47898888754
No 290
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=323.42 Aligned_cols=208 Identities=21% Similarity=0.273 Sum_probs=171.0
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHHHHHHH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYESLLY 963 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~e~l~~ 963 (1119)
||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 8999999999999999999999999999999865 4579999999875431 124579999999999999999999976
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1043 (1119)
..... ... .+..++.+.++++.+++.+..++.+ ..||+|||||++||||++.+|++|||||||+|||+.+++
T Consensus 95 ~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 95 GLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred ccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 53211 111 1233556889999999988777764 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1044 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1044 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
.+.+.|+++.++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+... ....+.+.|.
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~~~~~~~~~~~~~~ 228 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPTDELLSGKASASALL 228 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHhChhHHHHhh
Confidence 999999998754 899999999975 46678999999975 79999887542 2234555554
No 291
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-35 Score=328.94 Aligned_cols=216 Identities=25% Similarity=0.368 Sum_probs=178.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 259 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35899999999999999999999999999999999999987 9999999998765322 357999999973 6667
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||.||+.|..+..+.. ..+ ....++++++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~--------------------~~~--------------~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP--------------------REE--------------MVERVDQALRQVGMEDFLNREPHR-- 140 (279)
T ss_pred ccHHHHHhhhHhhCCCC--------------------HHH--------------HHHHHHHHHHHcCChhhhhCCccc--
Confidence 89999998864322110 000 012356788999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++...+.|++++.|++. ++. .||+|++|++
T Consensus 141 ---LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~ 215 (279)
T PRK13635 141 ---LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNK 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998755788888888765 454 5999999999
Q ss_pred CeEEEEcChhHHHH---HHHhcCCCCC
Q 001228 420 GQIVYQGPRDNVLE---FFEHMGFKCP 443 (1119)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p 443 (1119)
|++++.|+.+++.. .+...|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999988753 3444455444
No 292
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.3e-35 Score=319.78 Aligned_cols=194 Identities=28% Similarity=0.384 Sum_probs=164.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 45999999999999999999999999999999999999886 999999999876432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.+.....+.. ++ .....++.+++.+||++..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~---------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKK---------------------ER-------------EIQRRVGAALRQVGLEHKADAFPEQ 137 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC---------------------HH-------------HHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999998864322100 00 0012346788899998877888776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|++++.|++ .++.++||++++|
T Consensus 138 -----LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l 210 (214)
T TIGR02673 138 -----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIIL 210 (214)
T ss_pred -----CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEe
Confidence 999999999999999999999999999999999999999999999865 477888887765 4788899999999
Q ss_pred cCCe
Q 001228 418 SEGQ 421 (1119)
Q Consensus 418 ~~G~ 421 (1119)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
No 293
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-35 Score=332.75 Aligned_cols=219 Identities=20% Similarity=0.306 Sum_probs=174.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++... .....+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 467888776553100 001249999999999999999999999999999999999876 4589999999865
Q ss_pred C--------hhhhcceEEEEccCCCC-CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCC
Q 001228 934 N--------QETFARVSGYCEQNDIH-SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPG 1003 (1119)
Q Consensus 934 ~--------~~~~~~~~gy~~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~ 1003 (1119)
. ...+++.++|++|++.. ....|++||+.|..... ....+...+.+.++++.++|. ++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 2 12345679999999742 23469999998764321 122333445678899999994 566655
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999998754 899999999975 56778999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 789888874
No 294
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-35 Score=288.28 Aligned_cols=200 Identities=29% Similarity=0.425 Sum_probs=171.8
Q ss_pred ccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---h---h-hcceEEEEccC
Q 001228 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---T-FARVSGYCEQN 948 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~-~~~~~gy~~q~ 948 (1119)
......+|++|++.|++||-+||||||||||||||-+|+|+.. +.+|+|.+.|++... + . ..+.+|+|+|.
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEe
Confidence 4456789999999999999999999999999999999999877 458999999988643 1 1 23579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
..+.|++|..||+.....++..... .....+.+.|+.+||.+..+.++ .+|||||+|||+||||++..|+||
T Consensus 97 F~Lip~ltAlENV~lPleL~ge~~~---~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vL 168 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGESSA---DSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVL 168 (228)
T ss_pred eeccccchhhhhccchhhhcCCccc---cHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEE
Confidence 9999999999999999888753222 23344678999999987776663 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|.||||.+||.++...|.+++-.+. +.|.|.|++||||. +...|+|.+-|.. |+++.
T Consensus 169 fADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 169 FADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred eccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 9999999999999999999999885 45999999999974 6788999999975 78764
No 295
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=324.54 Aligned_cols=209 Identities=25% Similarity=0.343 Sum_probs=171.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.+ ++..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 68 (241)
T PRK14250 4 IEFKEVSYSS-------------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIK 68 (241)
T ss_pred EEEEeEEEEe-------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5667766543 23459999999999999999999999999999999999865 45899999998753
Q ss_pred h---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHH
Q 001228 935 Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~G 1010 (1119)
. ...++.++|++|++.+++ .|++||+.+....+ .. ....+.++++.+++. ++.++. +..||+|
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G 135 (241)
T PRK14250 69 TIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---GE----KNVDVEYYLSIVGLNKEYATRD-----VKNLSGG 135 (241)
T ss_pred hcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---Cc----HHHHHHHHHHHcCCCHHHhhCC-----cccCCHH
Confidence 2 234567999999988776 69999987653321 11 123577889999996 455554 4579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |+|||++||+++ ++.+.||++++|.+ |+++..
T Consensus 136 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (241)
T PRK14250 136 EAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEY 213 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 999999999999999999999999999999999999999998764 999999999975 46678999999975 788888
Q ss_pred cCCC
Q 001228 1090 GPLG 1093 (1119)
Q Consensus 1090 g~~~ 1093 (1119)
|+..
T Consensus 214 ~~~~ 217 (241)
T PRK14250 214 AKTY 217 (241)
T ss_pred CCHH
Confidence 7753
No 296
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.8e-35 Score=333.66 Aligned_cols=225 Identities=20% Similarity=0.282 Sum_probs=178.2
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEECCcc
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 932 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~ 932 (1119)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 46778876554311 12346999999999999999999999999999999999986531 237999999987
Q ss_pred CCh---hh---hc-ceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCC
Q 001228 933 KNQ---ET---FA-RVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003 (1119)
Q Consensus 933 ~~~---~~---~~-~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 1003 (1119)
+.. .. ++ +.++|++|++ .+.|.+|+.+++.+...... .....+..+.+.++++.++|.+..+... ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--CC
Confidence 642 22 22 4699999998 57889999999877644332 2234445567889999999975322211 12
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+.+||||||||++|||||+.+|+|||+||||++||+.++..|+++|+++.++ |.|||+||||++ .+...+|++++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 4689999999999999999999999999999999999999999999999765 899999999975 4556799999997
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
+|++++.|+..
T Consensus 237 ~G~ive~g~~~ 247 (330)
T PRK09473 237 AGRTMEYGNAR 247 (330)
T ss_pred CCEEEEECCHH
Confidence 58999999853
No 297
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=329.21 Aligned_cols=216 Identities=25% Similarity=0.348 Sum_probs=177.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++. +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 4677887764420 12459999999999999999999999999999999999866 4589999999876
Q ss_pred Ch---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 NQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ..+++.++|++|++. .++..|++||+.+..... ....++....+.++++.+++.+..++. +..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCH
Confidence 42 245677999999974 567789999998764322 122333445678999999998777776 357999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ ++|||++||+++ ++ ..||++++|.+ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999766 599999999975 34 57999999975 78888
Q ss_pred ecCCC
Q 001228 1089 AGPLG 1093 (1119)
Q Consensus 1089 ~g~~~ 1093 (1119)
.|+..
T Consensus 223 ~g~~~ 227 (271)
T PRK13632 223 QGKPK 227 (271)
T ss_pred ecCHH
Confidence 88753
No 298
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=339.88 Aligned_cols=195 Identities=25% Similarity=0.409 Sum_probs=171.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCCCCCCCC
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (1119)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999887 99999999886431 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|+.+.. ....++.+++.+||++..++.+++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~---- 128 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYPGS---- 128 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCccc----
Confidence 999998752100 011246688999999888888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++..++|++++|++|+
T Consensus 129 -LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGK 206 (352)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999876577888877765 58899999999999999
Q ss_pred EEEEcChhHHH
Q 001228 422 IVYQGPRDNVL 432 (1119)
Q Consensus 422 iv~~G~~~~~~ 432 (1119)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999874
No 299
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=330.70 Aligned_cols=219 Identities=21% Similarity=0.288 Sum_probs=177.1
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.++... ....+.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~ 75 (280)
T PRK13633 5 IKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTS 75 (280)
T ss_pred EEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecc
Confidence 57778776553100 0012459999999999999999999999999999999999876 45899999998764
Q ss_pred h----hhhcceEEEEccCCCC-CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 935 Q----ETFARVSGYCEQNDIH-SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ~----~~~~~~~gy~~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
. ...++.+||++|++.. +...|+.|++.|..... .....+.++.++++++.++|.+..++.+ ..||+
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 147 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSG 147 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 2 2346779999999742 33469999998865432 2233444567889999999988777763 57999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||+|+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++ ..||++++|++ |++++
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~-~~~d~v~~l~~-G~i~~ 224 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EA-VEADRIIVMDS-GKVVM 224 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HH-hcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999754 999999999976 34 45999999975 78988
Q ss_pred ecCCC
Q 001228 1089 AGPLG 1093 (1119)
Q Consensus 1089 ~g~~~ 1093 (1119)
.|+..
T Consensus 225 ~g~~~ 229 (280)
T PRK13633 225 EGTPK 229 (280)
T ss_pred ecCHH
Confidence 88753
No 300
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-35 Score=312.00 Aligned_cols=190 Identities=59% Similarity=0.963 Sum_probs=159.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.. ..++.+|+|+||+|++||+++|+|+||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 35778877655311 012469999999999999999999999999999999999643224689999999876
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
. ..+++.++|++|++.+++.+|++||+.+...++ .||+||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 345567999999998889999999998643110 39999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|++|||||+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||+++.++...||++++|.++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999997533567899999997548888765
No 301
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-35 Score=326.76 Aligned_cols=216 Identities=23% Similarity=0.291 Sum_probs=174.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 578888876542 24599999999999999999999999999999999997542 13589999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----cccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++. |+.||+.+....+.. ........+.++++++.+++.+. .++.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87632 2345679999999888775 999999886543311 11222334567889999998542 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+...||++++|.
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 789999999975 4667889999997
Q ss_pred cCcEEEEecCC
Q 001228 1082 RGGRVIYAGPL 1092 (1119)
Q Consensus 1082 ~gG~v~~~g~~ 1092 (1119)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 5 789988874
No 302
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-35 Score=327.49 Aligned_cols=205 Identities=25% Similarity=0.377 Sum_probs=172.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 260 (1119)
.+|+|||+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999999987 999999998875422 2356999999963 34467
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||.||+.+.....+.. ++ .....++.+++.+||.+..++.+.+
T Consensus 95 tv~~~l~~~~~~~~~~---------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (277)
T PRK13652 95 TVEQDIAFGPINLGLD---------------------EE-------------TVAHRVSSALHMLGLEELRDRVPHH--- 137 (277)
T ss_pred cHHHHHHhHHHHcCCC---------------------HH-------------HHHHHHHHHHHHCCChhHhcCCccc---
Confidence 9999998754321110 00 0112356789999999888888876
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.++||++++|++|
T Consensus 138 --LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G 214 (277)
T PRK13652 138 --LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKG 214 (277)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998775577888887765 4788999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
No 303
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.2e-35 Score=328.42 Aligned_cols=224 Identities=21% Similarity=0.283 Sum_probs=176.9
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++.+.. +.+.+...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 677888765531100 000012359999999999999999999999999999999999876 45899999998764
Q ss_pred h---hhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCC
Q 001228 935 Q---ETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS 1008 (1119)
. ...++.++|++|++. +++.+|+.|++.++..... ........+.++++++.+++. ...+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 2 223456999999975 5677899999987654321 122333445688999999994 455554 35799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
+|||||++||++|+.+|+||||||||+|||+.+++.+.+.|+++.++ |.|||++||+++ ++...||++++|.+ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999975 56667999999974 8898
Q ss_pred EecCCC
Q 001228 1088 YAGPLG 1093 (1119)
Q Consensus 1088 ~~g~~~ 1093 (1119)
+.|+..
T Consensus 230 ~~~~~~ 235 (267)
T PRK15112 230 ERGSTA 235 (267)
T ss_pred ecCCHH
Confidence 888743
No 304
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=322.87 Aligned_cols=206 Identities=21% Similarity=0.354 Sum_probs=173.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999886 9999999988754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+..+...... .. +....++.+++.+||++..++.+++
T Consensus 93 ~tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 137 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLS---------AE------------------------QREDRANELMEEFHIEHLRDSMGQS-- 137 (241)
T ss_pred CcHHHHHhhhhhcccccC---------HH------------------------HHHHHHHHHHHHcCCHHHhhcchhh--
Confidence 999999987533211000 00 0112346688899998877777766
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||++++.+|++|+|||||+|||+.++..+.+.++++++ .+.|+|++.|++ .++.+++|++++|++
T Consensus 138 ---LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 138 ---LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQ 212 (241)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeC
Confidence 999999999999999999999999999999999999999999998865 478888887765 478899999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
No 305
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3e-35 Score=320.64 Aligned_cols=202 Identities=26% Similarity=0.364 Sum_probs=169.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 46999999999999999999999999999999999999886 9999999988754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC-CcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 338 (1119)
+||+||+.++....+.. . ....+.+++.++ +.+..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~~~~- 131 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRRGGD- 131 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCChhh-
Confidence 99999998764321100 0 001234566665 55666777766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++..+.|+|++.|++ .++.+++|++++|+
T Consensus 132 ----LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 132 ----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVME 206 (230)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999998764467888887775 47888999999999
Q ss_pred CCeEEEEcChhHH
Q 001228 419 EGQIVYQGPRDNV 431 (1119)
Q Consensus 419 ~G~iv~~G~~~~~ 431 (1119)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
No 306
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-35 Score=325.20 Aligned_cols=205 Identities=26% Similarity=0.330 Sum_probs=171.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999886 999999999875432 2467999999974 5777
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+.....+.. . .+....++++++.+||++..++.+++
T Consensus 99 ~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 142 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------P------------------------KKMKDIIDDLAKKVGMEDYLDKEPQN-- 142 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHhhCCccc--
Confidence 89999998754321100 0 00112356788999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ ..+|++++|++
T Consensus 143 ---LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~ 217 (271)
T PRK13632 143 ---LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE 217 (271)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987644578888888875 45 47999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
No 307
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-35 Score=324.35 Aligned_cols=194 Identities=22% Similarity=0.296 Sum_probs=167.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHH
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 5899999999999999999999999999999999999886 9999999977542 2457999999999999899999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.+... . . ....++.+++.+||++..+..+++ ||
T Consensus 101 nl~~~~~--~---~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS 135 (257)
T PRK11247 101 NVGLGLK--G---Q-----------------------------------WRDAALQALAAVGLADRANEWPAA-----LS 135 (257)
T ss_pred HHHhccc--c---h-----------------------------------HHHHHHHHHHHcCChhHhcCChhh-----CC
Confidence 9987421 0 0 001235678899998888887766 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.+..+.|+|++.|++. ++.++||+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999987655788888877664 6788999999999999999
Q ss_pred EcChh
Q 001228 425 QGPRD 429 (1119)
Q Consensus 425 ~G~~~ 429 (1119)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
No 308
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-35 Score=320.51 Aligned_cols=200 Identities=28% Similarity=0.394 Sum_probs=170.1
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++|.++... ..++.++|++|++.+++..|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999866 4589999999876431 234679999999999989999999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+.+..... ........+.+.++++.++|.+..++.+ ..||+|||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764322 1223334456788999999987777663 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1041 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+++.+.+.|++++.+ |+|||++||+++ ++.+.+|++++|.+ |++++.|+..
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 215 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKPE 215 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999998764 999999999975 46677999999975 7898888743
No 309
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-34 Score=330.41 Aligned_cols=214 Identities=20% Similarity=0.246 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCC--
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD-- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d-- 254 (1119)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++....+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999998742348999999998765432 14699999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 334 (1119)
.++|.+||.+++.+......... .. +....+.++++.+||++..++
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~---------~~------------------------~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMS---------KA------------------------EAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC---------HH------------------------HHHHHHHHHHHHcCCCChHHH-
Confidence 68899999999976543221000 00 011234567888999753322
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+ +...+.|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+..+.|++++.|+. ..+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEE
Confidence 1 1334559999999999999999999999999999999999999999999999876677777776665 4778899999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|++|++++.|+.+++..
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999988853
No 310
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=339.47 Aligned_cols=191 Identities=26% Similarity=0.384 Sum_probs=166.2
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccCCCCCCCCCH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 458999999977532 2345679999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.|+.. ....+.++++++.++|.+..++. +.+||||||||++|||||+.+|++|||||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 11234578999999998877776 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+..
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999999765 899999999975 57788999999975 7899888753
No 311
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.6e-35 Score=319.87 Aligned_cols=201 Identities=24% Similarity=0.328 Sum_probs=165.7
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC--eeEEEEEECCccCChhhh-cceEEEEccCCC--CCCCCC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YIEGDIKISGYPKNQETF-ARVSGYCEQNDI--HSPYVT 956 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g--~~~G~i~i~g~~~~~~~~-~~~~gy~~q~~~--~~~~~t 956 (1119)
+|+||||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999986520 158999999988654333 357999999984 556789
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC---CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK---SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
+.|++.+...... . ......+.+.++++.+++. +..++. +..||+|||||++|||||+.+|+|||||||
T Consensus 81 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG--K-LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC--c-cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 1 1233445688999999997 344444 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999975 56678999999975 889988874
No 312
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.2e-34 Score=359.41 Aligned_cols=210 Identities=28% Similarity=0.390 Sum_probs=174.7
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. .++.+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 46899999987752 12459999999999999999999999999999999999876 458999999988
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.+|||+|++.+++ -|++||+.++. .+.+ ++.++++++..++.+.. |..++..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 64 3567889999999999886 49999997641 1222 33467788888776543 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|++ .++|+|++||+++ ....+|++++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 357999999999999999999999999999999999999999999986 4899999999974 5677999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 899999984
No 313
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-35 Score=316.92 Aligned_cols=197 Identities=32% Similarity=0.462 Sum_probs=165.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|+++++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 36999999999999 99999999999999999999999886 999999998775432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+.....+.. ..+ ....++.+++.+||++..++.+++
T Consensus 89 v~~~l~~~~~~~~~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~---- 130 (211)
T cd03264 89 VREFLDYIAWLKGIP--------------------SKE--------------VKARVDEVLELVNLGDRAKKKIGS---- 130 (211)
T ss_pred HHHHHHHHHHHhCCC--------------------HHH--------------HHHHHHHHHHHCCCHHHHhCchhh----
Confidence 999998754322110 000 011346688899999888888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|++++|++|+
T Consensus 131 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 131 -LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIV-EDVESLCNQVAVLNKGK 206 (211)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999875 46777776654 46778999999999999
Q ss_pred EEEEc
Q 001228 422 IVYQG 426 (1119)
Q Consensus 422 iv~~G 426 (1119)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
No 314
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-36 Score=316.73 Aligned_cols=202 Identities=23% Similarity=0.309 Sum_probs=181.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---h---hh-cceEEEEccCCCCCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---TF-ARVSGYCEQNDIHSP 953 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~~-~~~~gy~~q~~~~~~ 953 (1119)
.-++|+||+|+.||++.|||-||||||||+++|.++.. +..|+|.++|.++.. . .+ ++.++.|+|+..++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 45899999999999999999999999999999999877 468999999988632 2 22 457999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
+.||.||+.|+..++ .++..++++.+.++++.+||.++.+++ +++|||||||||.|||||+.+|+|||||||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998776 467788888999999999999999998 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
+|.|||--+..+++-|.++.++ ++|||++|||++ +.+..-||+.+|+ +|+|+-.|++.+
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 9999999999999999998654 899999999986 6778889999996 689999998654
No 315
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-35 Score=333.35 Aligned_cols=222 Identities=18% Similarity=0.220 Sum_probs=174.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--CeeEEEEEECCcc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYP 932 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g~~~G~i~i~g~~ 932 (1119)
+.++|++..++.. .+...+|+||||+|++||++||+|+||||||||+++|+|.... .+..|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 5677776554321 1234699999999999999999999999999999999997642 2457999999987
Q ss_pred CCh---hhh----cceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCC---ccHHHHHHHHHHHHHHcCCCCc---ccc
Q 001228 933 KNQ---ETF----ARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSD---VDTKKRKMFVDEVMELVELKSL---NDS 997 (1119)
Q Consensus 933 ~~~---~~~----~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~---~~~~~~~~~~~~~l~~~~l~~~---~~~ 997 (1119)
+.. ... ++.++|++|++. +.|.+||.+++.+......... ....+..+.+.++++.++|.+. .++
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 632 111 246999999986 5678999999976422110000 1112334568899999999753 234
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhce
Q 001228 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1076 (1119)
Q Consensus 998 ~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 1076 (1119)
. +.+||||||||++|||||+.+|+||||||||+|||+.++..|+++|+++.++ |.|||+||||++ .+...+|+
T Consensus 155 ~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 155 F-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred C-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 3 4579999999999999999999999999999999999999999999999864 999999999975 46678999
Q ss_pred EeEEecCcEEEEecCC
Q 001228 1077 LLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1077 ~l~l~~gG~v~~~g~~ 1092 (1119)
+++|. +|++++.|+.
T Consensus 229 i~vm~-~G~ive~g~~ 243 (330)
T PRK15093 229 INVLY-CGQTVETAPS 243 (330)
T ss_pred EEEEE-CCEEEEECCH
Confidence 99997 5899999875
No 316
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-35 Score=323.50 Aligned_cols=223 Identities=21% Similarity=0.264 Sum_probs=177.0
Q ss_pred cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEE
Q 001228 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIK 927 (1119)
Q Consensus 851 ~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~ 927 (1119)
.+..+.++|+++.++ .+.+|+||||+|++||++||+|+||||||||+++|+|...+ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344678888876542 24699999999999999999999999999999999997642 13589999
Q ss_pred ECCccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCC
Q 001228 928 ISGYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002 (1119)
Q Consensus 928 i~g~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 1002 (1119)
++|.++.. ...++.++|++|++.+++ .||+||+.+...... ........+.+.++++.+++.+..+.....
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~- 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLHK- 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhcC-
Confidence 99987632 234567999999988877 599999987643211 112233445678899999885321111111
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
.+..||+|||||++|||||+.+|++|+|||||+|||+.++..+.++|+++. ++.|||++||+++ ++.+.||++++|.+
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~ 237 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 245799999999999999999999999999999999999999999999986 4799999999975 56788999999974
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 238 -G~i~~~g~~~ 247 (267)
T PRK14237 238 -GDLIEYDKTR 247 (267)
T ss_pred -CEEEEeCCHH
Confidence 8999988853
No 317
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=330.56 Aligned_cols=211 Identities=20% Similarity=0.258 Sum_probs=171.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC-CcceEEEECCccCCCCcc-------cceEEEeccCC-
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 254 (1119)
.++|+|||++|++||+++|+||||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987421 248999999998765432 13699999998
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc---c
Q 001228 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---C 330 (1119)
Q Consensus 255 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~ 330 (1119)
.+.|.+||.+++....+..... ... +....++++++.+||++ .
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~---------~~~------------------------~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGG---------NKK------------------------TRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCC---------CHH------------------------HHHHHHHHHHHHCCCCChHHH
Confidence 4789999999986643321000 000 01123567899999974 3
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh
Q 001228 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (1119)
Q Consensus 331 ~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 410 (1119)
.+..+++ |||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.+..+.|+|+++|+. ..+.++
T Consensus 147 l~~~p~~-----LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~ 220 (326)
T PRK11022 147 LDVYPHQ-----LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEA 220 (326)
T ss_pred HhCCchh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHh
Confidence 4556655 9999999999999999999999999999999999999999999999876677877777665 477889
Q ss_pred cCeEEEEcCCeEEEEcChhHHHH
Q 001228 411 FDDIILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 411 ~D~i~lL~~G~iv~~G~~~~~~~ 433 (1119)
+|+|++|++|+++..|+.+++.+
T Consensus 221 adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 221 AHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred CCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999988753
No 318
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-35 Score=326.85 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=177.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++. .....+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 3677887765431 012358999999999999999999999999999999999876 4589999999876
Q ss_pred Ch---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 NQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ...++.+||++|++. .++..||.||+.+..... ........+.++++++.++|.+..++. +..||+
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234677999999974 567789999998764322 122333445678999999998777665 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++ .+ ..+|++++|.+ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999975 34 46999999975 78888
Q ss_pred ecCCC
Q 001228 1089 AGPLG 1093 (1119)
Q Consensus 1089 ~g~~~ 1093 (1119)
.|+..
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 88753
No 319
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-35 Score=322.83 Aligned_cols=201 Identities=24% Similarity=0.328 Sum_probs=169.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 45999999999999999999999999999999999999886 99999999887542 34589999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.+.....+.. . .+ ....++.+++.+||++..++.+++ |
T Consensus 89 e~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~gl~~~~~~~~~~-----L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------K----------MQ--------------RLEIAHQMLKKVGLEGAEKRYIWQ-----L 129 (255)
T ss_pred HHHHhHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCChhHhhCChhh-----C
Confidence 9998754321100 0 00 012356788999998878887776 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc--CCe
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~--~G~ 421 (1119)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999998654577888877665 47889999999998 599
Q ss_pred EEEEcChh
Q 001228 422 IVYQGPRD 429 (1119)
Q Consensus 422 iv~~G~~~ 429 (1119)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99887653
No 320
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=5.1e-35 Score=317.02 Aligned_cols=199 Identities=27% Similarity=0.345 Sum_probs=162.8
Q ss_pred cccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCC
Q 001228 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI 950 (1119)
Q Consensus 871 ~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~ 950 (1119)
.+..+.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ..+...
T Consensus 26 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~ 94 (224)
T cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGG 94 (224)
T ss_pred hhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hccccc
Confidence 444556677789999999999999999999999999999999999865 458999999976421 111223
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+.+.+||+||+.+....+. .......+.+.++++.+++.+..++.+ .+||+|||||++|||+|+.+|++|||
T Consensus 95 ~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llll 166 (224)
T cd03220 95 FNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLI 166 (224)
T ss_pred CCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4567899999987654321 222334456788999999987777653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 167 DEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 167 DEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999998777899999999975 46677999999975 7887654
No 321
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=330.48 Aligned_cols=237 Identities=25% Similarity=0.397 Sum_probs=197.6
Q ss_pred hhhcCCCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcC
Q 001228 126 TDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGP 205 (1119)
Q Consensus 126 ~~~~~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp 205 (1119)
-+++.++-|+-.+..|++++- . ...++++|+|+||.+.+|+-++|+||
T Consensus 323 ~~~m~LP~P~g~L~Ve~l~~~---P-----------------------------Pg~~~pil~~isF~l~~G~~lgIIGP 370 (580)
T COG4618 323 AERMPLPAPQGALSVERLTAA---P-----------------------------PGQKKPILKGISFALQAGEALGIIGP 370 (580)
T ss_pred cCCCCCCCCCceeeEeeeeec---C-----------------------------CCCCCcceecceeEecCCceEEEECC
Confidence 345677778888999988872 1 12346799999999999999999999
Q ss_pred CCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHh
Q 001228 206 PGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 282 (1119)
Q Consensus 206 ~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 282 (1119)
||||||||.++|.|..+|. +|.|.+||.+++.+.. .+.|||.||+-.+|+. ||.|||. |+
T Consensus 371 SgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa---Rf---------- 433 (580)
T COG4618 371 SGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA---RF---------- 433 (580)
T ss_pred CCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH---hc----------
Confidence 9999999999999999986 9999999999877654 3789999999999975 9999993 22
Q ss_pred HHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCc
Q 001228 283 AELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362 (1119)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~ 362 (1119)
.++.|.+...+++..++. -|. ++.|++.+||.||+ .+.+||||||||+++||||+++|.
T Consensus 434 ------------~~~~d~~kIieAA~lAgv-----Hel---Il~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 434 ------------GEEADPEKVIEAARLAGV-----HEL---ILRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred ------------cccCCHHHHHHHHHHcCh-----HHH---HHhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCc
Confidence 123344445555544331 122 45799999999996 456799999999999999999999
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHH
Q 001228 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFF 435 (1119)
Q Consensus 363 illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f 435 (1119)
+++||||-|.||+.....+.+.+.+... .|.|+|+..|.| .+...+|+|++|++|++-.+|+++|++...
T Consensus 493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 493 LVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999999998865 578888888876 588999999999999999999999998754
No 322
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.2e-35 Score=317.54 Aligned_cols=196 Identities=21% Similarity=0.347 Sum_probs=164.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999886 9999999998754321 1469999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||+||+.+........ .. +....+..+++.+||++..++.++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VK------------------------EAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChh
Confidence 98999999998854321100 00 001124568889999887888777
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
. |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ +.+|++++
T Consensus 141 ~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~ 213 (221)
T TIGR02211 141 E-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE 213 (221)
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence 6 99999999999999999999999999999999999999999999987655788888888764 55 45799999
Q ss_pred EcCCeEE
Q 001228 417 LSEGQIV 423 (1119)
Q Consensus 417 L~~G~iv 423 (1119)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999975
No 323
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-35 Score=328.25 Aligned_cols=204 Identities=25% Similarity=0.359 Sum_probs=171.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCC-CCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDL-HHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 258 (1119)
+.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 35999999999999999999999999999999999999886 999999999875432 2357999999975 466
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.+||.||+.|.....+.. .. +....++.+++.+||++..++.+++
T Consensus 92 ~~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~- 136 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP----------PI------------------------EIRKRVDRALAEIGLEKYRHRSPKT- 136 (274)
T ss_pred cchHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHHHhcCCccc-
Confidence 789999998864322110 00 0012356688999999888888876
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .+.|++++.|++. ++ ..+|++++|+
T Consensus 137 ----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~ 209 (274)
T PRK13644 137 ----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMD 209 (274)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 4788888887765 55 5799999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988764
No 324
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=326.81 Aligned_cols=216 Identities=21% Similarity=0.266 Sum_probs=173.8
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEEC
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKIS 929 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~ 929 (1119)
..+.++|+++.++ ...+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3578888876542 24599999999999999999999999999999999997542 1358999999
Q ss_pred CccCC-----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccC
Q 001228 930 GYPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVG 1000 (1119)
Q Consensus 930 g~~~~-----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~ 1000 (1119)
|.++. ....++.++|++|++.+++. ||+||+.+....+. .. ...++.+.++++.+++.. ..++.
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98753 23345679999999988874 99999988654331 11 123345677888887742 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
+..||+|||||++|||||+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++ ++...||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999975 577889999999
Q ss_pred ec----------CcEEEEecCCC
Q 001228 1081 KR----------GGRVIYAGPLG 1093 (1119)
Q Consensus 1081 ~~----------gG~v~~~g~~~ 1093 (1119)
++ .|++++.|+.+
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred eccccccccccccceEEEeCCHH
Confidence 85 36789988753
No 325
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.1e-33 Score=356.64 Aligned_cols=211 Identities=23% Similarity=0.372 Sum_probs=174.9
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. ++.+|+|+|++|++||.+||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEE
Confidence 46899999987641 2359999999999999999999999999999999999876 458999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.+|||+|++.+++. |++||+.++.. .+.+ ++.++++++..++.+.. |..++..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 53 45678899999999998865 99999987521 1222 23466777777765432 3444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+++++.+++.|+++ +|+|+|++||+++ ....+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999985 4899999999974 6688999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 899999984
No 326
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-35 Score=323.23 Aligned_cols=203 Identities=22% Similarity=0.316 Sum_probs=165.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--C-eeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|.++.. ..+++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 4699999999999999999999999999999999997531 1 258999999987532 1345679999999888
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++. |++||+.+....+. ........++.++++++.+++.+. .++. +.+||+|||||++|||+|+.+|+|
T Consensus 98 ~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~l 170 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDS-----AFELSGGQQQRLCIARAIAVKPTM 170 (251)
T ss_pred ccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhcC-----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 875 99999987643321 111222344567889999998652 2222 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|||||||+|||+.++..+.+.|+++. +|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 171 LLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999985 4899999999975 56678999999975 789888774
No 327
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-35 Score=328.96 Aligned_cols=218 Identities=24% Similarity=0.302 Sum_probs=177.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCe-eEEEEEECCcc
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYP 932 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~-~~G~i~i~g~~ 932 (1119)
.++++|+++.++- ..+.+|+||||+|++||++||+|+||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 3677777765421 12359999999999999999999999999999999999865311 13899999987
Q ss_pred CCh---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 1008 (1119)
+.. ...++.+||++|++. .++..||+||+.|..... ....++..+.+.++++.++|.+..++. +..||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999984 567789999998764322 223344456688999999998877766 45799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
+|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ .+ ..||++++|.+ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999975 34 67999999975 7999
Q ss_pred EecCCC
Q 001228 1088 YAGPLG 1093 (1119)
Q Consensus 1088 ~~g~~~ 1093 (1119)
+.|+..
T Consensus 223 ~~g~~~ 228 (282)
T PRK13640 223 AQGSPV 228 (282)
T ss_pred EeCCHH
Confidence 988753
No 328
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-36 Score=338.53 Aligned_cols=212 Identities=25% Similarity=0.393 Sum_probs=175.7
Q ss_pred cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECC
Q 001228 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930 (1119)
Q Consensus 851 ~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g 930 (1119)
.+.+|+|+||++++. +++++|++|||+|++||++||+|+|||||||++++|.+... .+|+|.|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345699999998775 23459999999999999999999999999999999998765 479999999
Q ss_pred ccCC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccc-------cccC
Q 001228 931 YPKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND-------SMVG 1000 (1119)
Q Consensus 931 ~~~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~ 1000 (1119)
.+++ .+.+|+.||||||+..++. -||.+|+.|+. .+.. ++++-++.+..++.+..- ..+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSAS----DEEVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcC----HHHHHHHHHHcCcHHHHHhccccchhhHh
Confidence 9864 4567889999999988775 49999999863 2222 233556667777655332 2345
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
+.| ..|||||||||+||||++++|+|+++|||||+||.++...+++.+.+. ..|+|+|+|.|+. ++...||++++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEE
Confidence 443 469999999999999999999999999999999999999999999994 3589999999985 688999999999
Q ss_pred ecCcEEEEecCC
Q 001228 1081 KRGGRVIYAGPL 1092 (1119)
Q Consensus 1081 ~~gG~v~~~g~~ 1092 (1119)
++ |++.+.|+.
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 86 788888874
No 329
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-35 Score=318.55 Aligned_cols=201 Identities=24% Similarity=0.366 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 35899999999999999999999999999999999999886 999999998875432 2457999999988886 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCcc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEM 339 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~ 339 (1119)
||+||+.+.....+ . ....++.+++.+||+ +..++.+.+
T Consensus 92 tv~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~~-- 131 (241)
T PRK14250 92 TVKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATRDVKN-- 131 (241)
T ss_pred hHHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhCCccc--
Confidence 99999976432110 0 001235678889996 456666665
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++
T Consensus 132 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~ 207 (241)
T PRK14250 132 ---LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNK 207 (241)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999998765578888877765 478889999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|+++..|+++++.
T Consensus 208 G~i~~~~~~~~~~ 220 (241)
T PRK14250 208 GILVEYAKTYDFF 220 (241)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988763
No 330
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.5e-35 Score=318.31 Aligned_cols=196 Identities=24% Similarity=0.319 Sum_probs=164.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 46999999999999999999999999999999999999886 999999998875432 235799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.+.....+... .+ ....++.+++.+||++..++.+++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 137 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG--------------------DD--------------IRRRVSAALDKVGLLDKAKNFPIQ 137 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH--------------------HH--------------HHHHHHHHHHHcCChhhhhCCchh
Confidence 89999999988543221100 00 011245678889998877887776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++. +.|++++.|++ .++..++|+|++|
T Consensus 138 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l 210 (222)
T PRK10908 138 -----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDI-GLISRRSYRMLTL 210 (222)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998653 67777777665 4788899999999
Q ss_pred cCCeEE
Q 001228 418 SEGQIV 423 (1119)
Q Consensus 418 ~~G~iv 423 (1119)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
No 331
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-35 Score=320.71 Aligned_cols=203 Identities=25% Similarity=0.407 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 259 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 45999999999999999999999999999999999999886 999999999876542 23569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc-CCcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 338 (1119)
+||+||+.++..... . + .. ...++.+++.+ +|.+..++.+++
T Consensus 95 ~tv~~~l~~~~~~~~---~-~------------------~~--------------~~~~~~~l~~~~~l~~~~~~~~~~- 137 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R-D------------------QF--------------QERIKWVYELFPRLHERRIQRAGT- 137 (237)
T ss_pred CcHHHHHHHhhhccC---h-h------------------HH--------------HHHHHHHHHHHHHHHHHHhCchhh-
Confidence 999999987532110 0 0 00 00123455556 466556666655
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|+
T Consensus 138 ----LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 211 (237)
T PRK11614 138 ----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLE 211 (237)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999875 378888877665 57889999999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988774
No 332
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.6e-35 Score=337.14 Aligned_cols=199 Identities=26% Similarity=0.438 Sum_probs=171.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCCCCCCCC
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (1119)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999886 99999999887432 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|+.+.... . + ....++++++.+||++..++.+.+
T Consensus 92 v~enl~~~~~~~~~------------~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~~---- 131 (354)
T TIGR02142 92 VRGNLRYGMKRARP------------S----------E--------------RRISFERVIELLGIGHLLGRLPGR---- 131 (354)
T ss_pred HHHHHHHHhhccCh------------h----------H--------------HHHHHHHHHHHcCChhHhcCChhh----
Confidence 99999886431100 0 0 011346788999999888888877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++..++|+|++|++|+
T Consensus 132 -LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGR 209 (354)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999876578888887765 47889999999999999
Q ss_pred EEEEcChhHHH
Q 001228 422 IVYQGPRDNVL 432 (1119)
Q Consensus 422 iv~~G~~~~~~ 432 (1119)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988774
No 333
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-35 Score=320.55 Aligned_cols=204 Identities=25% Similarity=0.330 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC------C---cccceEEEeccCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE------F---VPQRTCAYISQHD 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------~---~~~~~~~yv~Q~d 254 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 35999999999999999999999999999999999999886 9999999987631 1 1235699999999
Q ss_pred CCCCCCCHHHHHHHhh-hhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc
Q 001228 255 LHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 333 (1119)
.+++.+||.||+.+.. ...+.. . .+ ....++.+++.+||++..++
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~gl~~~~~~ 137 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLS----------K----------DQ--------------ALARAEKLLERLRLKPYADR 137 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCChhhhhC
Confidence 9999999999997531 111100 0 00 01134668889999888888
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. .++|++++.|++. ++.+++|+
T Consensus 138 ~~~~-----LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 138 FPLH-----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred Chhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCE
Confidence 8766 999999999999999999999999999999999999999999999865 4788888777664 77789999
Q ss_pred EEEEcCCeEEEEcChhHH
Q 001228 414 IILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~ 431 (1119)
+++|.+|+++++|+.+++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999998764
No 334
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=314.98 Aligned_cols=221 Identities=25% Similarity=0.343 Sum_probs=193.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
..-++|+|++++.||+..|||=||||||||+++|.++.+|+ +|+|.++|.++..... ++.+++|+|.-.+
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 44689999999999999999999999999999999999997 9999999998866542 3679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
+|+.||.||..|+.+.+|.... +.+.+..+.|+..||+...+.++.
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred ccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCcc
Confidence 9999999999999998876421 112345678999999999999998
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ ||||+||||.+||||..+|+|||||||+|+|||--+.+..+.|.++.+.+++|+|+.. |...|.+++.|+|.+
T Consensus 164 e-----LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFit-HDLdEAlriG~rIai 237 (386)
T COG4175 164 E-----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT-HDLDEALRIGDRIAI 237 (386)
T ss_pred c-----ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEe-cCHHHHHhccceEEE
Confidence 7 9999999999999999999999999999999999999999999888888888887765 567899999999999
Q ss_pred EcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhh
Q 001228 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (1119)
|.+|+|+..|+++|++. .|.+.-+++|..++
T Consensus 238 mkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 238 MKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred ecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 99999999999999974 35555566666554
No 335
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=6.4e-35 Score=324.57 Aligned_cols=208 Identities=23% Similarity=0.330 Sum_probs=171.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCC--
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD-- 254 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d-- 254 (1119)
.+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999886 999999998875432 235699999996
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 333 (1119)
.+++.+||+||+.+...... .. .++ .....++.+++.+||+ ...+.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~------------------~~--~~~-------------~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLT------------------SL--DES-------------EQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhc------------------CC--CHH-------------HHHHHHHHHHHHcCCChhhhhC
Confidence 46678999999976432100 00 000 0112346688999996 66777
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|++.|++ ..+.+++|+
T Consensus 147 ~~~~-----LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~ 220 (265)
T TIGR02769 147 LPRQ-----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQR 220 (265)
T ss_pred Chhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcE
Confidence 7766 9999999999999999999999999999999999999999999998765577888877765 477789999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998774
No 336
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=319.86 Aligned_cols=206 Identities=20% Similarity=0.298 Sum_probs=165.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++.++
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 58999999999999999999999999999999999988621 2389999999876421 1245799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCC----cccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL----DICADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL----~~~~dt 333 (1119)
+ +||+||+.|.....+.... .+ ....++..++.+|| ++..++
T Consensus 101 ~-~tv~eni~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKDK-------------------KK--------------LDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCCH-------------------HH--------------HHHHHHHHHHHhCCchhhHHHHhC
Confidence 5 8999999886432210000 00 01124556777776 344567
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|+
T Consensus 147 ~~~~-----LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~-~~~~~~~d~ 218 (254)
T PRK14273 147 NALS-----LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNM-QQAGRISDR 218 (254)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCE
Confidence 6665 999999999999999999999999999999999999999999999854 57777777665 478889999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|+++.+|+.+++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
No 337
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.2e-35 Score=318.35 Aligned_cols=202 Identities=27% Similarity=0.322 Sum_probs=168.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHH
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 266 (1119)
|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999886 9999999998765332 258999999999999999999
Q ss_pred HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChH
Q 001228 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (1119)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG 346 (1119)
.+........ .... +....++.+++.+||++..++.+++ ||||
T Consensus 76 ~~~~~~~~~~--------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--------LSKS------------------------ERRAIVEEHIALVGLTEAADKRPGQ-----LSGG 118 (230)
T ss_pred HHHHHhcccC--------CCHH------------------------HHHHHHHHHHHHcCCHHHHcCChhh-----CCHH
Confidence 8753210000 0000 0012346688999999888888876 9999
Q ss_pred HHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEc
Q 001228 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (1119)
Q Consensus 347 qkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G 426 (1119)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999998765577888887765 4788999999999999999988
Q ss_pred ChhHH
Q 001228 427 PRDNV 431 (1119)
Q Consensus 427 ~~~~~ 431 (1119)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
No 338
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-35 Score=330.73 Aligned_cols=222 Identities=21% Similarity=0.268 Sum_probs=175.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.++|+|+++.++. +...+|+||||+|++||++||+|+||||||||+++|+|.... .+..|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5788998866531 123599999999999999999999999999999999997531 23579999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 1005 (1119)
.++.. ..+++.++|+||++.+++ .|++||+.|+..... ....+...+.+.++++.++|.+-.+...+. .+.
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~ 224 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDK-AGN 224 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhC-Ccc
Confidence 98742 245678999999998875 799999998643221 111222334567888888875322222222 245
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
+||||||||++|||||+.+|+||||||||+|||+.+...+++.|+++++ ++|||++||+++ .+.+.||++++|++ |+
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~ 301 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GW 301 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999875 799999999974 45666999999975 89
Q ss_pred EEEecCCC
Q 001228 1086 VIYAGPLG 1093 (1119)
Q Consensus 1086 v~~~g~~~ 1093 (1119)
+++.|+..
T Consensus 302 i~e~g~~~ 309 (329)
T PRK14257 302 IEEAGETK 309 (329)
T ss_pred EEEeCCHH
Confidence 99998864
No 339
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.2e-35 Score=317.98 Aligned_cols=204 Identities=23% Similarity=0.302 Sum_probs=168.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC----CCCcceEEEECCccCCCCcc-cceEEEeccCCC--CCC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK----DLRASGKITYCGHELNEFVP-QRTCAYISQHDL--HHG 258 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~----~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 258 (1119)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 5 8999999988754432 257999999974 567
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc---ccccccc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD---ICADTMV 335 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~---~~~dt~v 335 (1119)
.+|+.|++.+.....+.. .. .....++.+++.+||+ +..++.+
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------SK-------------------------QARALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------HH-------------------------HHHHHHHHHHHHcCCCchHHHHhCCh
Confidence 789999997753321100 00 0112356788999998 4456666
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
++ |||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++++..++|+|++.|++. ++..++|+++
T Consensus 124 ~~-----LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 197 (230)
T TIGR02770 124 FQ-----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVA 197 (230)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 65 99999999999999999999999999999999999999999999987655678888777654 7888999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001228 416 LLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
No 340
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.9e-35 Score=321.31 Aligned_cols=206 Identities=24% Similarity=0.349 Sum_probs=172.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC----------------cccceE
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----------------VPQRTC 247 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----------------~~~~~~ 247 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 46999999999999999999999999999999999999886 99999999877432 124579
Q ss_pred EEeccCCCCCCCCCHHHHHHHhhhh-cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC
Q 001228 248 AYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (1119)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 326 (1119)
+|++|++.+++.+||.||+.++... .+. ...+ ....++.+++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~--------------------~~~~--------------~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGM--------------------ARAE--------------AEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCC--------------------CHHH--------------HHHHHHHHHHHcC
Confidence 9999999999999999999875321 000 0000 0112456788999
Q ss_pred CcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 001228 327 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (1119)
Q Consensus 327 L~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 406 (1119)
|++..+..+.+ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .+
T Consensus 136 l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~ 209 (252)
T TIGR03005 136 LADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GF 209 (252)
T ss_pred ChhHhhcChhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HH
Confidence 98887777765 9999999999999999999999999999999999999999999998765577888887776 47
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhHHH
Q 001228 407 TYDLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 407 ~~~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 88999999999999999999988763
No 341
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=9.1e-35 Score=320.26 Aligned_cols=206 Identities=22% Similarity=0.357 Sum_probs=169.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5899999999999999999999999999999999999763 12389999999987542 1245799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----ccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 333 (1119)
+ +||+||+.+..+..+... . .+ ....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~---------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKD---------K----------KE--------------LDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCC---------H----------HH--------------HHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 999999988643221000 0 00 011346678899997 66677
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|+
T Consensus 141 ~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~ 212 (247)
T TIGR00972 141 SALG-----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARISDR 212 (247)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhCCE
Confidence 7766 999999999999999999999999999999999999999999999876 36777777665 478899999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|+++++|+.+++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
No 342
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-35 Score=322.34 Aligned_cols=206 Identities=30% Similarity=0.451 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 45999999999999999999999999999999999999886 999999998765432 235699999998888889
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.+.....+.. .. .....++.+++.+||++..++.+++
T Consensus 92 tv~e~l~~~~~~~~~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 134 (258)
T PRK13548 92 TVEEVVAMGRAPHGLS--------------------RA--------------EDDALVAAALAQVDLAHLAGRDYPQ--- 134 (258)
T ss_pred CHHHHHHhhhcccCCC--------------------cH--------------HHHHHHHHHHHHcCCHhHhcCCccc---
Confidence 9999998753211100 00 0011346688899998888888877
Q ss_pred CCCChHHHHHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~------~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
|||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||+|
T Consensus 135 --LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i 211 (258)
T PRK13548 135 --LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRI 211 (258)
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEE
Confidence 9999999999999999 599999999999999999999999999998744577888887765 4788899999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987764
No 343
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-35 Score=321.69 Aligned_cols=203 Identities=24% Similarity=0.276 Sum_probs=166.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 46999999999999999999999999999999999975421 257999999987632 2345679999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++ .|++||+.|....... .........++++++.+++.+ ..++. +..||+|||||++|||+|+.+|+|
T Consensus 97 ~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~l 168 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS-----ALKLSGGQQQRLCIARTIAVKPDV 168 (251)
T ss_pred CC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 87 8999999876543211 112333456778999998742 23333 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.||++++|.+ |++++.|+..
T Consensus 169 lllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (251)
T PRK14270 169 ILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKTE 231 (251)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCHH
Confidence 999999999999999999999999876 699999999975 56778999999975 7899888754
No 344
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-35 Score=328.22 Aligned_cols=206 Identities=24% Similarity=0.311 Sum_probs=172.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCC-CCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDL-HHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 258 (1119)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999986 999999999875421 2467999999974 233
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
..||.|++.|.....+.. . .+ ....++++++.+||++..++.+++
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~gL~~~~~~~~~~- 144 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------P----------EE--------------IRERVDESLKKVGMYEYRRHAPHL- 144 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------H----------HH--------------HHHHHHHHHHHCCCHhHhhCCccc-
Confidence 469999998864322110 0 00 112356789999999888988877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|++++.|++. ++.. +|++++|+
T Consensus 145 ----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~ 218 (280)
T PRK13633 145 ----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMD 218 (280)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEE
Confidence 99999999999999999999999999999999999999999999997655788888888776 4544 99999999
Q ss_pred CCeEEEEcChhHHHH
Q 001228 419 EGQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1119)
+|+++++|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 219 SGKVVMEGTPKEIFK 233 (280)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999988753
No 345
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-35 Score=321.30 Aligned_cols=214 Identities=24% Similarity=0.342 Sum_probs=171.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1119)
+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..... +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14240 4 ISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ 70 (250)
T ss_pred EEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 56777765432 245999999999999999999999999999999999964311 24799999998
Q ss_pred cCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCC
Q 001228 932 PKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLP 1002 (1119)
Q Consensus 932 ~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~ 1002 (1119)
++.. ...++.++|++|++.+++ .|++||+.+....... .......+.+.++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 143 (250)
T PRK14240 71 DIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS---- 143 (250)
T ss_pred EccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC----
Confidence 7642 234567999999988877 8999999886533211 122334456788888888742 22333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+.+||+|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||++||+++ .+...+|++++|++
T Consensus 144 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~~ 220 (250)
T PRK14240 144 -ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFLN 220 (250)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999985 4899999999975 46778999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 221 -G~i~~~~~~ 229 (250)
T PRK14240 221 -GEIVEFGDT 229 (250)
T ss_pred -CEEEEeCCH
Confidence 788888864
No 346
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=8.5e-35 Score=315.53 Aligned_cols=198 Identities=27% Similarity=0.377 Sum_probs=170.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999886 999999998765322 25799999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.+.....+. + ...+..+++.+||++..|..+++ |
T Consensus 89 ~~~~~~~~~~~~--------------------~------------------~~~~~~~l~~~~l~~~~~~~~~~-----L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL--------------------P------------------DSRIDEVLNIVDLTNTGKKKAKQ-----F 125 (223)
T ss_pred HHHHHHHHHcCC--------------------C------------------HHHHHHHHHHcCCcHHHhhhHhh-----C
Confidence 999875432110 0 01235678899999888888776 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv 423 (1119)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999865 4778888887764 788999999999999999
Q ss_pred EEcChhH
Q 001228 424 YQGPRDN 430 (1119)
Q Consensus 424 ~~G~~~~ 430 (1119)
+.|++.+
T Consensus 204 ~~~~~~~ 210 (223)
T TIGR03740 204 YQGKINK 210 (223)
T ss_pred EecChhh
Confidence 9998653
No 347
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-35 Score=323.29 Aligned_cols=216 Identities=21% Similarity=0.304 Sum_probs=173.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--CC-eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~g-~~~G~i~i~g 930 (1119)
.+.++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 367888775442 2459999999999999999999999999999999999754 11 1479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----cccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~ 1001 (1119)
.++.. ...++.+||++|++.+++. |++||+.+....... ....+..+.++++++.+++.+. .+..
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 87531 2345679999999888875 999999876433211 1223334557788999988532 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||+|+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++...||++++|+
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999975 5677899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |+++..|+..
T Consensus 229 ~-G~i~~~g~~~ 239 (259)
T PRK14274 229 M-GELVECNDTN 239 (259)
T ss_pred C-CEEEEECCHH
Confidence 4 8999988753
No 348
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4e-35 Score=355.25 Aligned_cols=227 Identities=26% Similarity=0.354 Sum_probs=183.4
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 i~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAF-------------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEe-------------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 5667766543 33469999999999999999999999999999999999875 35899999998753
Q ss_pred h---h-hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 935 Q---E-TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ~---~-~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
. . ..++.++|++|++.+++.+||+||+.++...+.. .........+.+.++++.+++.+..++.+ .+|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 2 1 1245699999999889999999999886432211 11122333456789999999988777764 47999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||+++ ++...||++++|.+ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999975 56778999999975 789988
Q ss_pred cCCCCC-hHHHHHHh
Q 001228 1090 GPLGHE-SHKLIEYF 1103 (1119)
Q Consensus 1090 g~~~~~-~~~l~~~f 1103 (1119)
|+.... .+.+.+.+
T Consensus 223 ~~~~~~~~~~~~~~~ 237 (501)
T PRK10762 223 REVADLTEDSLIEMM 237 (501)
T ss_pred cCcCcCCHHHHHHHh
Confidence 886543 23344443
No 349
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2e-33 Score=351.55 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhc---CCCeEE
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 1029 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~---~p~ill 1029 (1119)
.+||.|.+.|...+. . .....++++.++|..+ .++. +..|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 456666666654321 1 1124578888898653 3444 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPL 1092 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~ 1092 (1119)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ....+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999974 456799999994 57999999874
No 350
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.3e-35 Score=319.69 Aligned_cols=211 Identities=26% Similarity=0.372 Sum_probs=172.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 46999999999999999999999999999999999999886 9999999987754321 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+....... .+.... . .+ . .+....++++++.+||++..++.+++
T Consensus 92 ~tv~~nl~~~~~~~~~--~~~~~~---------~-~~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (242)
T TIGR03411 92 LTVFENLELALPRDKS--VFASLF---------F-RL-S-------------AEEKDRIEEVLETIGLADEADRLAGL-- 143 (242)
T ss_pred CCHHHHHHHhhhcccc--cccccc---------c-cc-H-------------HHHHHHHHHHHHHcCCchhhcCChhh--
Confidence 9999999885331100 000000 0 00 0 00112356788999999888888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||+|++|++
T Consensus 144 ---LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 144 ---LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTVLHQ 217 (242)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999865 57888877765 478889999999999
Q ss_pred CeEEEEcChhHH
Q 001228 420 GQIVYQGPRDNV 431 (1119)
Q Consensus 420 G~iv~~G~~~~~ 431 (1119)
|+++++|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999998775
No 351
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=323.50 Aligned_cols=215 Identities=22% Similarity=0.315 Sum_probs=175.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 260 (1119)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999886 999999999875432 2457999999974 67778
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||++|+.|.....+.. . . .....++.+++.+||.+..++.+++
T Consensus 100 ~v~~~~~~~~~~~~~~--~------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 142 (269)
T PRK13648 100 IVKYDVAFGLENHAVP--Y------------------D--------------EMHRRVSEALKQVDMLERADYEPNA--- 142 (269)
T ss_pred cHHHHHHhhHHhcCCC--H------------------H--------------HHHHHHHHHHHHcCCchhhhCCccc---
Confidence 9999998864321110 0 0 0011345688999998888887766
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. +|+|++|++|
T Consensus 143 --LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G 218 (269)
T PRK13648 143 --LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKG 218 (269)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECC
Confidence 99999999999999999999999999999999999999999999987655788888888764 5554 9999999999
Q ss_pred eEEEEcChhHHHH---HHHhcCCCCC
Q 001228 421 QIVYQGPRDNVLE---FFEHMGFKCP 443 (1119)
Q Consensus 421 ~iv~~G~~~~~~~---~f~~~G~~~p 443 (1119)
++++.|+.+++.+ .+...|+++|
T Consensus 219 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 219 TVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred EEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 9999999988643 3344454444
No 352
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.3e-34 Score=320.16 Aligned_cols=215 Identities=21% Similarity=0.272 Sum_probs=172.6
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--CeeEEEEEECC
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISG 930 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g~~~G~i~i~g 930 (1119)
..++++|+++.+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 356788877543 13589999999999999999999999999999999998653 11579999999
Q ss_pred ccCChhhh-cceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC---ccccccCCCCC
Q 001228 931 YPKNQETF-ARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS---LNDSMVGLPGV 1004 (1119)
Q Consensus 931 ~~~~~~~~-~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~ 1004 (1119)
.++..... ++.++|++|++. +.+..|+.+++.+...... ... ..+.++++++.+++.+ ..++. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87643322 356999999974 4456799998876433221 111 2356789999999976 33444 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..||+|||||++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999975 46678999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 217 G~i~~~~~~~ 226 (254)
T PRK10418 217 GRIVEQGDVE 226 (254)
T ss_pred CEEEEecCHH
Confidence 7899988753
No 353
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-35 Score=328.03 Aligned_cols=205 Identities=22% Similarity=0.328 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCC-
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDL- 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 255 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999987 99999999887432 12357999999962
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 334 (1119)
.+..+||+||+.|+....+.. .. +....++.+++.+||+ +..++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------ED------------------------EAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhHhhCC
Confidence 333589999998754321100 00 0012356788999997 577888
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|++++.|+ ..++.++||++
T Consensus 143 ~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~-~~~~~~~~d~v 215 (287)
T PRK13641 143 PFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHN-MDDVAEYADDV 215 (287)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEE
Confidence 877 999999999999999999999999999999999999999999999865 46777776655 45788999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 354
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-35 Score=324.55 Aligned_cols=205 Identities=28% Similarity=0.388 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-----cccceEEEeccCCC-CC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDL-HH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~-~~ 257 (1119)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++++ +|+|.++|+++... ..++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 35999999999999999999999999999999999999886 99999999987421 12457999999963 33
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
..+||+||+.|.....+.. .. +....+..+++.+||++..++.+++
T Consensus 92 ~~~tv~e~i~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~ 137 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGLS----------KE------------------------EVEKRVKEALKAVGMEGFENKPPHH 137 (275)
T ss_pred ccccHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCchhhcCChhh
Confidence 3579999998753211100 00 0011345688999999888888877
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++. +.|++++.|++ .++.++||++++|
T Consensus 138 -----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~-~~~~~~~d~i~~l 210 (275)
T PRK13639 138 -----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDV-DLVPVYADKVYVM 210 (275)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998763 77888777664 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 211 SDGKIIKEGTPKEVF 225 (275)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998874
No 355
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-35 Score=363.66 Aligned_cols=213 Identities=26% Similarity=0.427 Sum_probs=179.7
Q ss_pred CCcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC
Q 001228 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL 255 (1119)
Q Consensus 179 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~ 255 (1119)
+.++..+||+|+|+++++|+.+||+|||||||||.+.+|-..++|+ +|.|.+||++++.... |+.+|.|+|+|.
T Consensus 998 PsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~ 1074 (1228)
T KOG0055|consen 998 PTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV 1074 (1228)
T ss_pred CCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCch
Confidence 3445678999999999999999999999999999999999999997 9999999999987764 578999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
+|.. |+||||.|+..- . +.++.++|+..++. .+. +.+|++.+||.|
T Consensus 1075 LF~~-TIrENI~YG~~~--v-----------------------s~~eIi~Aak~ANa-----H~F---I~sLP~GyDT~v 1120 (1228)
T KOG0055|consen 1075 LFNG-TIRENIAYGSEE--V-----------------------SEEEIIEAAKLANA-----HNF---ISSLPQGYDTRV 1120 (1228)
T ss_pred hhcc-cHHHHHhccCCC--C-----------------------CHHHHHHHHHHhhh-----HHH---HhcCcCcccCcc
Confidence 9975 999999987210 0 11222333332221 111 357999999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
|+ .+..||||||||++||||++.||+||||||.||+||+.+..-+.+.|.+... |+|+|+.-|.. .+.+.+|.|+
T Consensus 1121 Ge-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIAHRL--STIqnaD~I~ 1195 (1228)
T KOG0055|consen 1121 GE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIAHRL--STIQNADVIA 1195 (1228)
T ss_pred Cc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEecch--hhhhcCCEEE
Confidence 97 3344999999999999999999999999999999999999999999999764 78888888876 4889999999
Q ss_pred EEcCCeEEEEcChhHHHH
Q 001228 416 LLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1119)
|+++|+|+++|++++++.
T Consensus 1196 Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1196 VLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEECCEEEecccHHHHHh
Confidence 999999999999999975
No 356
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-34 Score=322.82 Aligned_cols=209 Identities=25% Similarity=0.324 Sum_probs=173.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1119)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999886212399999999876432 2357999999974 5677
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|..+..+.. .. +....++.+++.+||++..++.+.+
T Consensus 100 ~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~-- 143 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------RP------------------------EMIKIVRDVLADVGMLDYIDSEPAN-- 143 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------HH------------------------HHHHHHHHHHHHCCChhHhcCCccc--
Confidence 89999998754321100 00 0112356688999999888888766
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++. ++ ..||++++|++
T Consensus 144 ---LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~ 218 (282)
T PRK13640 144 ---LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD 218 (282)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987655788888888765 45 57999999999
Q ss_pred CeEEEEcChhHHHH
Q 001228 420 GQIVYQGPRDNVLE 433 (1119)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1119)
|++++.|+++++..
T Consensus 219 G~i~~~g~~~~~~~ 232 (282)
T PRK13640 219 GKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEeCCHHHHhc
Confidence 99999999988753
No 357
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-35 Score=322.09 Aligned_cols=221 Identities=22% Similarity=0.289 Sum_probs=174.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999886 9999999998754321 2358999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.++....... +....+... ....+ .. .+....++..++.+||++..++.+++
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~~---~~~~~--~~-----------~~~~~~~~~~l~~~gl~~~~~~~~~~-- 153 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLKT---PAFRR--AE-----------SEALDRAATWLERVGLLEHANRQAGN-- 153 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhccc---ccccc--ch-----------hHHHHHHHHHHHhCChhhhhhCChhh--
Confidence 99999998854311000 000000000 00000 00 00112356678899998888888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++
T Consensus 154 ---LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 154 ---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998765577888877765 478899999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|++++.|+.+++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988763
No 358
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-35 Score=321.55 Aligned_cols=216 Identities=26% Similarity=0.315 Sum_probs=172.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1119)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 357777765442 2459999999999999999999999999999999999632 2 12479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++ .|++||+.+....+.. ......++.+.++++.+++.+ ..++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGI--KDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87531 234567999999998877 8999999876433211 112233456778888888743 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++...||++++|.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999975 5677899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 222 ~-G~i~~~g~~~ 232 (252)
T PRK14239 222 D-GDLIEYNDTK 232 (252)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899888753
No 359
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-35 Score=324.17 Aligned_cols=229 Identities=23% Similarity=0.378 Sum_probs=176.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ +++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 467777775442 12469999999999999999999999999999999999866 4589999999876
Q ss_pred ChhhhcceEEEEccCCCCC--CCCCHHHHHHHHHHhhc-CCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 934 NQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~--~~~tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
.....++.++|++|++.+. ...+++|++.+...... ..........+.+.++++.+++.+..++. +..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHH
Confidence 4322234699999997653 23478888765321000 00111122344577899999998777765 3479999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||++|||||+.+|+||+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999975 567788998666 4 8999988
Q ss_pred CCCC--ChHHHHHHhh
Q 001228 1091 PLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1091 ~~~~--~~~~l~~~f~ 1104 (1119)
+... ....+.+.|.
T Consensus 224 ~~~~~~~~~~~~~~~~ 239 (272)
T PRK15056 224 PTETTFTAENLELAFS 239 (272)
T ss_pred CHHhccCHHHHHHHhc
Confidence 7654 2334555554
No 360
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=8.4e-35 Score=314.81 Aligned_cols=195 Identities=26% Similarity=0.408 Sum_probs=165.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 569999999999999999999999999999999999865 458999999987532 124567999999999888
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..|+.||+.+...... .....+..+.+.++++.+++.+..++. +.+||+|||||++|||+|+.+|++|+||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8999999988654321 122334455688999999998776666 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1034 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
|+|||+.++..+++.|+++.+ .|+|||++||+++ ....||++++|.+ |++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 999999999999999999876 4899999999974 5678999999975 554
No 361
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=329.18 Aligned_cols=208 Identities=20% Similarity=0.243 Sum_probs=174.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCC--C
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 255 (1119)
+.+|+|||++|++|++++|+|+||||||||+++|+|.++++ +|+|.++|.++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999886 899999999876542 235799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 334 (1119)
+.|.+||.+++.+..+..... .+. +....+.++++.+||. ...++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~---------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSL---------SAA------------------------ERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccCC---------CHH------------------------HHHHHHHHHHHHCCCChHHhcCC
Confidence 889999999997654321100 000 0112356789999996 467777
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+++ |||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+|+++|. ...+.+++|+|
T Consensus 152 p~~-----LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd-l~~~~~~adrv 225 (327)
T PRK11308 152 PHM-----FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD-LSVVEHIADEV 225 (327)
T ss_pred Ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEE
Confidence 766 999999999999999999999999999999999999999999999987667777776655 55788899999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988753
No 362
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-35 Score=322.22 Aligned_cols=217 Identities=22% Similarity=0.303 Sum_probs=174.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-e--eEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--IEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~--~~G~i~i~g 930 (1119)
.+.++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|..... + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 367777775442 245999999999999999999999999999999999975421 2 479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. .....+..+.+.++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234567999999998887 899999987654331 1122333456778899888742 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5778899999997
Q ss_pred c----CcEEEEecCCC
Q 001228 1082 R----GGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~----gG~v~~~g~~~ 1093 (1119)
. +|++++.|+..
T Consensus 224 ~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 224 TDESRIGQMVEFGVTT 239 (259)
T ss_pred ccCCCCceEEEeCCHH
Confidence 3 48999998754
No 363
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=9.8e-35 Score=322.02 Aligned_cols=215 Identities=25% Similarity=0.309 Sum_probs=172.2
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc--
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-- 932 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~-- 932 (1119)
++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+
T Consensus 7 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 71 (258)
T PRK11701 7 LSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQ 71 (258)
T ss_pred EEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCcccc
Confidence 67777775442 2459999999999999999999999999999999999865 458999999986
Q ss_pred ---CCh---hh----hcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-cccccc
Q 001228 933 ---KNQ---ET----FARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMV 999 (1119)
Q Consensus 933 ---~~~---~~----~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~ 999 (1119)
+.. .. .++.++|++|++. +.+.+|+.||+.+...... ..........+.++++.+++.+ ..++.
T Consensus 72 ~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 148 (258)
T PRK11701 72 LRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL- 148 (258)
T ss_pred ccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC-
Confidence 432 11 2346999999974 5677899999876432211 1112233456788999999963 44544
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEe
Q 001228 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1000 ~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.+...+++.|+++.++ |.|||++||+++ .+...+|+++
T Consensus 149 ----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~ 223 (258)
T PRK11701 149 ----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLL 223 (258)
T ss_pred ----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 4579999999999999999999999999999999999999999999998764 899999999975 4556799999
Q ss_pred EEecCcEEEEecCCC
Q 001228 1079 LLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1079 ~l~~gG~v~~~g~~~ 1093 (1119)
+|.+ |++++.|+..
T Consensus 224 ~l~~-g~i~~~~~~~ 237 (258)
T PRK11701 224 VMKQ-GRVVESGLTD 237 (258)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9975 8999988753
No 364
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-34 Score=315.21 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=175.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|++..++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 36999999999999999999999999999999999999986 899999999876432 24679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+.. +. .....++.+++.+||++..++.+.+
T Consensus 90 ~~nl~~~~~~~~~~---------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (232)
T cd03300 90 FENIAFGLRLKKLP---------------------KA-------------EIKERVAEALDLVQLEGYANRKPSQ----- 130 (232)
T ss_pred HHHHHHHHHhcCCC---------------------HH-------------HHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99998764322110 00 0011346788999999888888766
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++...+.|++++.|++ .++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998765578888888876 467899999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999877663
No 365
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=9.3e-35 Score=322.02 Aligned_cols=205 Identities=23% Similarity=0.307 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC----------------cccceE
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----------------VPQRTC 247 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----------------~~~~~~ 247 (1119)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 46999999999999999999999999999999999999886 89999999876421 123579
Q ss_pred EEeccCCCCCCCCCHHHHHHHhhh-hcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC
Q 001228 248 AYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (1119)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 326 (1119)
+|++|++.+++.+||+||+.++.. ..... . . .....+..+++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K----------Q--------------EARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------H----------H--------------HHHHHHHHHHHHcC
Confidence 999999999999999999987432 11100 0 0 00123456888999
Q ss_pred Ccccc-cccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 001228 327 LDICA-DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (1119)
Q Consensus 327 L~~~~-dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 405 (1119)
|.+.. +..+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .
T Consensus 141 l~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~ 213 (257)
T PRK10619 141 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-G 213 (257)
T ss_pred CChhhhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-H
Confidence 98753 666655 999999999999999999999999999999999999999999999875 478888877765 4
Q ss_pred hHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001228 406 ETYDLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 406 ~~~~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++.++||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 788899999999999999999988764
No 366
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-35 Score=323.85 Aligned_cols=216 Identities=20% Similarity=0.271 Sum_probs=172.2
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1119)
.++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 467888776442 2469999999999999999999999999999999999642 1 13579999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.. ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87632 2345679999999988875 99999987643221 1112223455778888888742 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999975 4677899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 238 ~-G~i~~~~~~~ 248 (268)
T PRK14248 238 N-GDLVEYDQTE 248 (268)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899988753
No 367
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=325.02 Aligned_cols=204 Identities=21% Similarity=0.330 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------ccceEEEeccCC--
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHD-- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-- 254 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999886 999999998875421 235699999996
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 333 (1119)
.+++ .||+||+.|.....+.. .. + ....++.+++.+||. ...++
T Consensus 97 ~~~~-~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~ 141 (280)
T PRK13649 97 QLFE-ETVLKDVAFGPQNFGVS----------QE----------E--------------AEALAREKLALVGISESLFEK 141 (280)
T ss_pred hhcc-ccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhhhC
Confidence 3454 69999998754321100 00 0 011245678889997 45677
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.+++|+
T Consensus 142 ~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~ 214 (280)
T PRK13649 142 NPFE-----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADF 214 (280)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCE
Confidence 7766 999999999999999999999999999999999999999999999875 377888887776 478889999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|++++.|+++++.
T Consensus 215 i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 215 VYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988764
No 368
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=318.20 Aligned_cols=206 Identities=22% Similarity=0.304 Sum_probs=163.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ +....+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 58999999999999999999999999999999999864 1001389999999887531 1245799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----cccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 333 (1119)
+ .||+||+.|.....+.... .. ....++..++.+||.+ ..+.
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 145 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK-------------------AY--------------LAERVERSLRHAALWDEVKDRLHE 145 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhhHHhhC
Confidence 7 5999999886432211000 00 0112455677788753 2344
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|+
T Consensus 146 ~~~~-----LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~-~~~~~~~d~ 217 (253)
T PRK14242 146 SALG-----LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNM-QQAARVSDV 217 (253)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecH-HHHHHhCCE
Confidence 4544 999999999999999999999999999999999999999999999853 57887777765 478899999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
|++|++|+++..|+++++.
T Consensus 218 v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 218 TAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987763
No 369
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-35 Score=354.76 Aligned_cols=218 Identities=26% Similarity=0.332 Sum_probs=179.0
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 70 (510)
T PRK09700 6 ISMAGIGKSF-------------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYN 70 (510)
T ss_pred EEEeeeEEEc-------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECC
Confidence 5677776543 33469999999999999999999999999999999999875 35899999998764
Q ss_pred hh----hhcceEEEEccCCCCCCCCCHHHHHHHHHHhh----cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCC
Q 001228 935 QE----TFARVSGYCEQNDIHSPYVTVYESLLYSAWLR----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1119)
Q Consensus 935 ~~----~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 1006 (1119)
.. ..++.++|++|++.+++.+||+||+.++.... ........+..+.+.++++.+++.+..++.+ .+
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (510)
T PRK09700 71 KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----AN 145 (510)
T ss_pred CCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hh
Confidence 21 12356999999999899999999998753211 0000122334456889999999987777764 57
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
||||||||++|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|.+ |++
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i 223 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSS 223 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999878999999999975 46678999999975 789
Q ss_pred EEecCCCC
Q 001228 1087 IYAGPLGH 1094 (1119)
Q Consensus 1087 ~~~g~~~~ 1094 (1119)
++.|+..+
T Consensus 224 ~~~g~~~~ 231 (510)
T PRK09700 224 VCSGMVSD 231 (510)
T ss_pred eeecchhh
Confidence 99887654
No 370
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-34 Score=315.55 Aligned_cols=204 Identities=26% Similarity=0.404 Sum_probs=174.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+|+|+|++|+||++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999986 899999999876532 2457999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.+.....+.. ..+ ....+..+++.+||.+..++.+.+ ||
T Consensus 91 ~l~~~~~~~~~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS 131 (235)
T cd03299 91 NIAYGLKKRKVD--------------------KKE--------------IERKVLEIAEMLGIDHLLNRKPET-----LS 131 (235)
T ss_pred HHHHHHHHcCCC--------------------HHH--------------HHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 998754321100 000 011245678889998888888876 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||+||+|++.+|++++|||||+|||+.++..+.+.|++++...+.|++++.|++ +++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998765578888888776 47888999999999999999
Q ss_pred EcChhHHH
Q 001228 425 QGPRDNVL 432 (1119)
Q Consensus 425 ~G~~~~~~ 432 (1119)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
No 371
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=319.48 Aligned_cols=214 Identities=24% Similarity=0.358 Sum_probs=172.2
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1119)
++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 56777765432 245999999999999999999999999999999999975421 25799999998
Q ss_pred cCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----cccccCCC
Q 001228 932 PKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGLP 1002 (1119)
Q Consensus 932 ~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~ 1002 (1119)
++.. ...++.++|++|++.+++ .|++||+.+...... .......++.++++++.+++.+. .+..
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 143 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKP---- 143 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCC----
Confidence 7532 234567999999998877 899999987643321 11122334557888999888542 3333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+.+||+|||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||++||+++ .+...+|++++|.+
T Consensus 144 -~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~ 220 (250)
T PRK14262 144 -GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR 220 (250)
T ss_pred -hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999865 799999999975 46778999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|+++..|+.
T Consensus 221 -G~i~~~g~~ 229 (250)
T PRK14262 221 -GELIEYGPT 229 (250)
T ss_pred -CEEEEecCH
Confidence 788888874
No 372
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=319.43 Aligned_cols=204 Identities=24% Similarity=0.297 Sum_probs=164.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCe---eEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---IEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~---~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+||||+|++||+++|+|+||||||||+++|+|...+.+ .+|+|.++|.++.. ..+++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999764322 37999999987632 2345679999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++..|+.||+.+....... ...+...+.+.++++.+++.. ..+.. +..||+|||||++|||+|+.+|+|
T Consensus 97 ~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~l 169 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLKTP-----ATGLSGGQQQRLCIARALAVEPEI 169 (252)
T ss_pred CcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999875432211 112233445666777776542 22333 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...||++++|.+ |++++.|+..
T Consensus 170 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 232 (252)
T PRK14272 170 LLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPTD 232 (252)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999864 799999999975 56678999999975 7899888753
No 373
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.8e-35 Score=307.68 Aligned_cols=190 Identities=52% Similarity=0.874 Sum_probs=159.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC--CCCeeEEEEEECCc
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYIEGDIKISGY 931 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~--~~g~~~G~i~i~g~ 931 (1119)
.+.++|+++.++... +...+.+|+|+||+|++||+++|+|+||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 467788776553100 001245999999999999999999999999999999999986 5 46899999998
Q ss_pred cCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 932 PKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 932 ~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
++.....++.++|++|++.+++.+|++||+.+...+. .||+||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8765455678999999998888999999997642110 399999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|||++|||||+.+|++|+|||||+|||+.+++.+.+.|+++.++|+|||+++|+++.++...+|++++|.+ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999985456778999999975 7887654
No 374
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=5.8e-35 Score=311.38 Aligned_cols=185 Identities=28% Similarity=0.330 Sum_probs=158.9
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++.+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++..|
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 3569999999999999999999999999999999999876 458999999987532 335567999999998888999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
++||+.+.... . ..+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||+|
T Consensus 90 v~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 155 (201)
T cd03231 90 VLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155 (201)
T ss_pred HHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 99999875311 1 234578899999998776665 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
||+.++..+++.|+++.++|+|+|++||++. +....+++++.+
T Consensus 156 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999998777999999999974 677788888776
No 375
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.3e-34 Score=363.84 Aligned_cols=205 Identities=27% Similarity=0.403 Sum_probs=169.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG- 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-
Confidence 46999999999999999999999999999999999999997 9999999999887653 5789999999999975
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++.. . +.++..+++...+ .+..+ -.|++..||.+|+ .+
T Consensus 542 TI~eNi~~~~~-~-------------------------~~e~i~~al~~a~------l~~~i--~~lp~G~dt~ige-~G 586 (686)
T TIGR03797 542 SIFENIAGGAP-L-------------------------TLDEAWEAARMAG------LAEDI--RAMPMGMHTVISE-GG 586 (686)
T ss_pred cHHHHHhcCCC-C-------------------------CHHHHHHHHHHcC------cHHHH--HhccccccccccC-CC
Confidence 99999987522 0 0011111111111 11111 1356778999996 35
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..||||||||++||||++.+|++|+||||||+||+.+..++.+.|+++ ++|+|++.|++ +..+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECC
Confidence 679999999999999999999999999999999999999999999875 57988888876 567889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++.+|+++++.+
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 376
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=320.58 Aligned_cols=217 Identities=24% Similarity=0.315 Sum_probs=174.9
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEEC
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKIS 929 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~ 929 (1119)
..++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3578888876542 23599999999999999999999999999999999997542 1358999999
Q ss_pred CccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccC
Q 001228 930 GYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVG 1000 (1119)
Q Consensus 930 g~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~ 1000 (1119)
|.++.. ..+++.++|++|++.+++. |++||+.+....... .......+.++++++.+++.+ ..++.
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 165 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHEN-- 165 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhhCC--
Confidence 987632 2346689999999988876 999999876433211 112223455788899888853 22333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ +.|||++||+++ ++.+.||++++|
T Consensus 166 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 240 (272)
T PRK14236 166 ---AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFM 240 (272)
T ss_pred ---cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999975 799999999975 466789999999
Q ss_pred ecCcEEEEecCCC
Q 001228 1081 KRGGRVIYAGPLG 1093 (1119)
Q Consensus 1081 ~~gG~v~~~g~~~ 1093 (1119)
.+ |++++.|+..
T Consensus 241 ~~-G~i~~~g~~~ 252 (272)
T PRK14236 241 YM-GKLVEYGDTD 252 (272)
T ss_pred EC-CEEEecCCHH
Confidence 75 7899988753
No 377
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.2e-35 Score=312.97 Aligned_cols=194 Identities=29% Similarity=0.429 Sum_probs=161.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999886 999999998875432 2357999999974 4667
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+.....+.. . .+ ....++.+++.+||++..++.+++
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 134 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------E----------EE--------------IEERVEEALELVGLEGLRDRSPFT-- 134 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCcHhhhcCCccc--
Confidence 89999998754321100 0 00 011345678899998878888776
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++..+||+|++|++
T Consensus 135 ---LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i~~l~~ 209 (211)
T cd03225 135 ---LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRVIVLED 209 (211)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999998764 77888877765 478889999999998
Q ss_pred Ce
Q 001228 420 GQ 421 (1119)
Q Consensus 420 G~ 421 (1119)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
No 378
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=320.20 Aligned_cols=206 Identities=20% Similarity=0.309 Sum_probs=166.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 358999999999999999999999999999999999987410 1389999999886432 124569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++ +||+||+.|..+..+.. .. + ....++.+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN----------KK----------D--------------LDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCCcchhhhhc
Confidence 87 89999998864322110 00 0 011245677888873 3456
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 150 ~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~d 221 (258)
T PRK14268 150 SPALS-----LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARISD 221 (258)
T ss_pred CChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhCC
Confidence 66655 999999999999999999999999999999999999999999999864 67887777765 47788999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++|++++.|+++++.
T Consensus 222 ~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
No 379
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=320.35 Aligned_cols=208 Identities=20% Similarity=0.261 Sum_probs=168.7
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--C-eeEEEEEECCccCCh-----hhhcceEEEEccCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISGYPKNQ-----ETFARVSGYCEQND 949 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~ 949 (1119)
++..+|+|+||+|++||+++|+|+||||||||+++|+|...+ + +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 345699999999999999999999999999999999997642 1 258999999987532 23456799999998
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 950 IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 950 ~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
.++ .+|+.||+.+....+. . .....+.+.++++.+++.+....... ..+..||+|||||++|||||+.+|+|||
T Consensus 99 ~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll 172 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLL 172 (261)
T ss_pred ccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 877 5999999988754331 1 12234567889999998543221111 1245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-------cCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-------RGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-------~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.||++++|+ ++|++++.|+..
T Consensus 173 lDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 173 LDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTA 241 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHH
Confidence 999999999999999999999986 4799999999975 4677899999996 468999998854
No 380
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.7e-35 Score=313.17 Aligned_cols=201 Identities=23% Similarity=0.308 Sum_probs=169.2
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+++||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSR-------------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEec-------------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 46777776543 23469999999999999999999999999999999999866 4579999999876
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
.....++.++|++|++.+++.+|+.||+.+...++. . ...+.+.++++.+++.+..+.. +..||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHH
Confidence 543344569999999988888999999987653321 1 1233467889999998776665 3579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
|++|||+++.+|++|||||||+|||+.+++.+++.++++.++|+|||++||+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999986 5778899999885
No 381
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=321.97 Aligned_cols=237 Identities=23% Similarity=0.273 Sum_probs=182.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.+.++|+++.++ ++.+|+||||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 467778776543 34699999999999999999999999999999999997642 13589999999
Q ss_pred ccCCh----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCC
Q 001228 931 YPKNQ----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1119)
Q Consensus 931 ~~~~~----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 1006 (1119)
.++.. ..+++.++|++|++.+++ .|++||+.+...... .....+....+.++++.+++....+.... ..+.+
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234667999999998887 799999987643221 12233334456788899988643211111 12457
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
||+|||||++|||+|+.+|+||||||||+|||+.+++.+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.+ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999975 56778999999975 799
Q ss_pred EEecCCCCC-----hHHHHHHhhhhcCCCc
Q 001228 1087 IYAGPLGHE-----SHKLIEYFEVSIPFFP 1111 (1119)
Q Consensus 1087 ~~~g~~~~~-----~~~l~~~f~~~i~g~~ 1111 (1119)
++.|+..+. ......|++ +.+|--
T Consensus 241 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~ 269 (276)
T PRK14271 241 VEEGPTEQLFSSPKHAETARYVA-GLSGDV 269 (276)
T ss_pred EEeCCHHHHHhCcCcHHHHHHHh-hcCCcc
Confidence 998875421 123455666 666543
No 382
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-34 Score=311.65 Aligned_cols=195 Identities=23% Similarity=0.346 Sum_probs=164.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHHHHH
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999886 999999998875432 2357999999999999999999998
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1119)
+........ .. .....++++++.+||++..++.+.+ |||||
T Consensus 93 ~~~~~~~~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 133 (211)
T cd03298 93 LGLSPGLKL--------------------TA--------------EDRQAIEVALARVGLAGLEKRLPGE-----LSGGE 133 (211)
T ss_pred cccccccCc--------------------cH--------------HHHHHHHHHHHHcCCHHHHhCCccc-----CCHHH
Confidence 753211000 00 0012346788999999888888766 99999
Q ss_pred HHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEc
Q 001228 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G 426 (1119)
||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999998765577888876665 5788899999999999998764
No 383
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.6e-34 Score=314.55 Aligned_cols=198 Identities=24% Similarity=0.349 Sum_probs=166.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35999999999999999999999999999999999999886 9999999998765322 2469999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||.||+.+.....+.. .. +....++.+++.+||.+..++.++
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~ 145 (228)
T PRK10584 100 IPTLNALENVELPALLRGES--------------------SR--------------QSRNGAKALLEQLGLGKRLDHLPA 145 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCC--------------------HH--------------HHHHHHHHHHHHcCCHhHhhCChh
Confidence 99999999998754321100 00 001234668899999988888887
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ +.+|++++
T Consensus 146 ~-----LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~ 218 (228)
T PRK10584 146 Q-----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLR 218 (228)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEE
Confidence 6 99999999999999999999999999999999999999999999987655788888888765 55 56999999
Q ss_pred EcCCeEEEE
Q 001228 417 LSEGQIVYQ 425 (1119)
Q Consensus 417 L~~G~iv~~ 425 (1119)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999998753
No 384
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.3e-35 Score=311.95 Aligned_cols=188 Identities=23% Similarity=0.288 Sum_probs=156.7
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++.+|+||||+|++||+++|+|+||||||||+++|+|..+ +..|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t 90 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELT 90 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCc
Confidence 3469999999999999999999999999999999999866 458999999987532 334567999999998888999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
+.||+.+....+. . ...+.++++++.+++.+..++. +..||+|||||++||+||+.+|++|+|||||+|
T Consensus 91 v~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 159 (204)
T PRK13538 91 ALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 (204)
T ss_pred HHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 9999988654321 1 1234578899999998776665 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
||+.++..+++.|+++.++|.|||++||+++ .+..+-++++.+
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 160 IDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999998777899999999975 344433444433
No 385
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=318.75 Aligned_cols=214 Identities=25% Similarity=0.295 Sum_probs=171.3
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1119)
+.++|+++.+ +++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (249)
T PRK14253 4 FNIENLDLFY-------------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE 70 (249)
T ss_pred EEEeccEEEE-------------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 5667766543 2346999999999999999999999999999999999975421 35799999998
Q ss_pred cCC----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCC
Q 001228 932 PKN----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPG 1003 (1119)
Q Consensus 932 ~~~----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~ 1003 (1119)
++. ....++.++|++|++.+++ .|+.||+.+...... ........+.+.++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 142 (249)
T PRK14253 71 DIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSH----- 142 (249)
T ss_pred EcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcC-----
Confidence 753 1234567999999998887 899999987643221 1112233455778888888753 22332
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++...||++++|++
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~- 219 (249)
T PRK14253 143 AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM- 219 (249)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999875 699999999975 56778999999975
Q ss_pred cEEEEecCC
Q 001228 1084 GRVIYAGPL 1092 (1119)
Q Consensus 1084 G~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 220 G~i~~~g~~ 228 (249)
T PRK14253 220 GELVEHDDT 228 (249)
T ss_pred CEEEEeCCH
Confidence 799988874
No 386
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=323.05 Aligned_cols=205 Identities=27% Similarity=0.354 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC--C---cccceEEEeccCCCC-C
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--F---VPQRTCAYISQHDLH-H 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~~-~ 257 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++.. +
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35899999999999999999999999999999999999987 9999999998742 1 123569999999752 4
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
...|+.||+.+.....+.. . .+ ....++.+++.+||++..++.+++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 136 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------E----------AE--------------ITRRVDEALTLVDAQHFRHQPIQC 136 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCCHhHhcCCchh
Confidence 4568999998754321100 0 00 011245688899998888888776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++. .+.|+|++.|++ .++.+++|++++|
T Consensus 137 -----LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~d~i~~l 209 (271)
T PRK13638 137 -----LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDI-DLIYEISDAVYVL 209 (271)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999875 377877776655 5788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
No 387
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-34 Score=312.66 Aligned_cols=206 Identities=23% Similarity=0.352 Sum_probs=171.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC-C--CeeEEEEEECCccC---Chhh----hcceEEEEccCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G--GYIEGDIKISGYPK---NQET----FARVSGYCEQND 949 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~-~--g~~~G~i~i~g~~~---~~~~----~~~~~gy~~q~~ 949 (1119)
..+++||||++++||++||+|.|||||||+.++|+|+.. + ...+|+|.++|.++ +... +.+.++|++|++
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 569999999999999999999999999999999999765 2 24568999999865 2222 234799999997
Q ss_pred C--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc---cccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001228 950 I--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL---NDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024 (1119)
Q Consensus 950 ~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 1024 (1119)
. +.|.+||.+-+.-....+.... ..++..+.+.++|+.+++.+- .+.+ +.+||||||||+.||.||+.+
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y-----PhelSGGMrQRV~IAmala~~ 171 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY-----PHELSGGMRQRVMIAMALALN 171 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC-----CcccCCcHHHHHHHHHHHhCC
Confidence 5 6788999887765544332111 344566778999999999864 3444 568999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1025 p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|++||.||||++||...++.|+++|+++.+ .|.|+|+||||+. -+.+.||+++||. .|+|++.|+..
T Consensus 172 P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY-aG~iVE~g~~~ 239 (316)
T COG0444 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY-AGRIVEEGPVE 239 (316)
T ss_pred CCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE-CcEEEEeCCHH
Confidence 999999999999999999999999999986 6999999999986 4888999999997 58999999864
No 388
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=9.1e-35 Score=313.07 Aligned_cols=200 Identities=29% Similarity=0.426 Sum_probs=162.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCC--CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 261 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++. ..++.++|++|++.+. ..+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999886 999999998764 2346799999998663 3489
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+....... .+.. ... .....++.+++.+||++..++.+++
T Consensus 87 v~e~l~~~~~~~~~--~~~~--------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 132 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRR--------------LSK--------------ADKAKVDEALERVGLSELADRQIGE---- 132 (213)
T ss_pred HHHHHHhccccccc--cccC--------------CCH--------------HHHHHHHHHHHHcCCHHHHhCCccc----
Confidence 99999875321100 0000 000 0012356788999998878888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|++|
T Consensus 133 -LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 133 -LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT- 208 (213)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-
Confidence 999999999999999999999999999999999999999999999876 477888877765 4788899999999886
Q ss_pred EEEEc
Q 001228 422 IVYQG 426 (1119)
Q Consensus 422 iv~~G 426 (1119)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66554
No 389
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=334.75 Aligned_cols=225 Identities=26% Similarity=0.389 Sum_probs=191.9
Q ss_pred ccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC----hhhhcceEEEE
Q 001228 870 MKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN----QETFARVSGYC 945 (1119)
Q Consensus 870 ~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~----~~~~~~~~gy~ 945 (1119)
+++..+.++..++|+||||++++||++||+|.||||||||+|+|+|... +.+|+|.++|.+.. .+.....|+.+
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcEEE
Confidence 4444556677889999999999999999999999999999999999876 56899999998753 23445679999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhc-CCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001228 946 EQNDIHSPYVTVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024 (1119)
Q Consensus 946 ~q~~~~~~~~tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 1024 (1119)
.|+..+.|++||.||+.++...+. ..-++.+...+.+.++|+.+++....+.. +.+||.||||.|.|||||..+
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~-----v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL-----VGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh-----hhhCCHHHHHHHHHHHHHhcC
Confidence 999999999999999988766544 23456677778899999999985335555 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC-CC-ChHHHHHH
Q 001228 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL-GH-ESHKLIEY 1102 (1119)
Q Consensus 1025 p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~-~~-~~~~l~~~ 1102 (1119)
++||+||||||.|+....+.+.++++++.++|.+||+|||+++ ++++.||++.+|.+ |+++...+. .+ +.+++++.
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~~~~~~lv~~ 241 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAETSEDELVRL 241 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999996 89999999999975 889988883 43 44556555
Q ss_pred h
Q 001228 1103 F 1103 (1119)
Q Consensus 1103 f 1103 (1119)
.
T Consensus 242 M 242 (500)
T COG1129 242 M 242 (500)
T ss_pred h
Confidence 4
No 390
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-35 Score=288.93 Aligned_cols=209 Identities=22% Similarity=0.318 Sum_probs=176.3
Q ss_pred ccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC-------------h---hh
Q 001228 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN-------------Q---ET 937 (1119)
Q Consensus 874 ~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~-------------~---~~ 937 (1119)
-+.++...+|++||++.++|+++.|+|.|||||||+|+||.=+.+ +..|.|.++|..+. . ..
T Consensus 13 HK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r 90 (256)
T COG4598 13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90 (256)
T ss_pred HhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHH
Confidence 345677789999999999999999999999999999999987665 46899999986431 1 12
Q ss_pred hcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHH
Q 001228 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTI 1017 (1119)
Q Consensus 938 ~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~i 1017 (1119)
++.+.|+|+|+..++..+||.||+.-.-.-- ....+.+..+.++.+|..+|+.+..+.++ ..|||||+||++|
T Consensus 91 ~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aI 163 (256)
T COG4598 91 LRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAI 163 (256)
T ss_pred HHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHH
Confidence 3446899999999999999999997542111 13456667778899999999999888774 4799999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1018 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1018 A~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||+.+|+++++|||||.|||+-..++.+.+++++++|+|++++||.+.. ......+++.|.+ |.|.+.||+.
T Consensus 164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPE 237 (256)
T ss_pred HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChH
Confidence 999999999999999999999999999999999999999999999998642 4455688888865 8999999864
No 391
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=319.78 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=175.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1119)
.++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|...+. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 467888876542 235999999999999999999999999999999999976531 1369999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 1005 (1119)
.++.. ...++.++|++|++.+++ .|+.||+.+....... ....+..+.+.++++.+++.+..+..... .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87521 234567999999988877 8999999876432210 12223345678899999885421111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecC-
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG- 1083 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~g- 1083 (1119)
.||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.||++++|+++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999985 577889999999753
Q ss_pred ---cEEEEecCCC
Q 001228 1084 ---GRVIYAGPLG 1093 (1119)
Q Consensus 1084 ---G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 8999988753
No 392
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=321.82 Aligned_cols=216 Identities=24% Similarity=0.305 Sum_probs=173.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--------ccceEEEeccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--------PQRTCAYISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--------~~~~~~yv~Q~d~ 255 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 45999999999999999999999999999999999999875223699999998764321 1356999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
+++.+||+||+.+....... . .... ... ..+ +....++.+++.+||++..|+.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~---~------~~~~--~~~-~~~--------------~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP---F------WRTC--FSW-FTR--------------EQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc---c------hhhh--ccc-ccH--------------HHHHHHHHHHHHcCCHHHHhCCc
Confidence 99999999999875321000 0 0000 000 000 01123567899999998888888
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
++ |||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.|++ .++.+++|+|+
T Consensus 151 ~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~ 224 (262)
T PRK09984 151 ST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIV 224 (262)
T ss_pred cc-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 76 9999999999999999999999999999999999999999999999765577888887766 46889999999
Q ss_pred EEcCCeEEEEcChhHH
Q 001228 416 LLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (1119)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
No 393
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=9.4e-35 Score=307.19 Aligned_cols=178 Identities=25% Similarity=0.322 Sum_probs=149.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCC-CCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDI-HSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~-~~~ 953 (1119)
+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 469999999999999999999999999999999999866 458999999987531 234567999999973 333
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..|++||+.+..... .....+..+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999998864322 122333445678999999998777766 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
|+|||+.+++.+.+.|+++.++|+|||++||+++
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999864
No 394
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=350.96 Aligned_cols=209 Identities=25% Similarity=0.323 Sum_probs=173.9
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIHS 952 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~~~ 952 (1119)
++++.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.++
T Consensus 8 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 85 (491)
T PRK10982 8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLV 85 (491)
T ss_pred eCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccc
Confidence 334569999999999999999999999999999999999865 358999999987532 22356799999999888
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
+.+||.||+.+................+.++++++.+++.+..++. +.+|||||||||+|||||+.+|+||||||
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 86 LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9999999998753211111112233345688999999998776666 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
||+|||+.++..+++.|++++++|.|||++||+++ ++...||++++|.+ |+++..|+...
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999999878999999999975 56678999999975 89999887654
No 395
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=318.39 Aligned_cols=203 Identities=22% Similarity=0.275 Sum_probs=164.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+|+||+|.+|++++|+|+||||||||+++|+|...+. +..|+|.++|.++.. ..+++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 45999999999999999999999999999999999976531 236999999987532 2346779999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++. |++||+.+....+.. . ..+...+.++++++.+++.+ ..++. +.+||+|||||++|||||+.+|++
T Consensus 97 ~~~-tv~enl~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~l 168 (251)
T PRK14249 97 FPK-SIFDNVAFGPRMLGT-T-AQSRLDEVVEKSLRQAALWDEVKDNLHKS-----GLALSGGQQQRLCIARVLAIEPEV 168 (251)
T ss_pred CcC-cHHHHHhhHHHhcCC-C-hhhHHHHHHHHHHHHhCCchhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 875 999999886543211 1 11223345677888888753 23333 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||||+|||+.++..+.++|+++. +|+|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 169 llLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 231 (251)
T PRK14249 169 ILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRTG 231 (251)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCHH
Confidence 99999999999999999999999985 5899999999975 56677899999975 7888888753
No 396
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=321.74 Aligned_cols=210 Identities=22% Similarity=0.349 Sum_probs=173.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 46999999999999999999999999999999999999886 9999999988754322 35699999999999899
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.+...-... .. . .. .+ .....++.+++.+||++..++.+.+
T Consensus 97 tv~~~~~~~~~~~~~-----~~----------~-~~-~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (265)
T PRK10253 97 TVQELVARGRYPHQP-----LF----------T-RW-RK-------------EDEEAVTKAMQATGITHLADQSVDT--- 143 (265)
T ss_pred cHHHHHHhCcccccc-----cc----------c-CC-CH-------------HHHHHHHHHHHHcCCHHHhcCCccc---
Confidence 999999875210000 00 0 00 00 0012346788899998878888776
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||++++|++|
T Consensus 144 --LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G 220 (265)
T PRK10253 144 --LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREG 220 (265)
T ss_pred --CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999987655778888877664 788999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
No 397
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.1e-34 Score=320.65 Aligned_cols=207 Identities=22% Similarity=0.241 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC--CCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL--HHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 258 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999986 9999999988753221 246999999974 567
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccC
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 337 (1119)
.+||.|++.+..+...... . . +....++.+++.+||. +..++.+.+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~---------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE---------P----------E--------------QREKQIIETLRQVGLLPDHASYYPHM 149 (267)
T ss_pred chhHHHHHHHHHHhccCCC---------H----------H--------------HHHHHHHHHHHHcCCChHHHhcCchh
Confidence 8899999987543211000 0 0 0011346789999994 666777766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++..+||++++|
T Consensus 150 -----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l 223 (267)
T PRK15112 150 -----LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVM 223 (267)
T ss_pred -----cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999998765577888877765 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
No 398
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-34 Score=319.62 Aligned_cols=205 Identities=20% Similarity=0.278 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1119)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999986 999999998875422 2457999999974 5777
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
.||.||+.+.....+.. .. + ....++.+++.+||.+..++.+..
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------RE----------E--------------MIKRVDEALLAVNMLDFKTREPAR-- 140 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------HH----------H--------------HHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999998754321110 00 0 011356788899998888887766
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. .+|+|++|++
T Consensus 141 ---LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~ 215 (277)
T PRK13642 141 ---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKA 215 (277)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987755788888877765 454 6999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|+++..|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998874
No 399
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=322.11 Aligned_cols=210 Identities=22% Similarity=0.327 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 36999999999999999999999999999999999999886 999999998764332 235699999998888899
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||.||+.+...... . .. +. .... ....++.+++.+||++..++.+++
T Consensus 101 tv~e~l~~~~~~~~-~-~~-------------~~-~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 147 (265)
T PRK10575 101 TVRELVAIGRYPWH-G-AL-------------GR-FGAA--------------DREKVEEAISLVGLKPLAHRLVDS--- 147 (265)
T ss_pred cHHHHHHhCccccc-c-cc-------------cC-CCHH--------------HHHHHHHHHHHcCCHHHhcCCccc---
Confidence 99999987532100 0 00 00 0000 012346688899998878888877
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++|
T Consensus 148 --LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 148 --LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGG 224 (265)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998765577888877765 4788999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+.+++.
T Consensus 225 ~i~~~~~~~~~~ 236 (265)
T PRK10575 225 EMIAQGTPAELM 236 (265)
T ss_pred eEEEecCHHHhc
Confidence 999999987753
No 400
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.2e-33 Score=343.80 Aligned_cols=213 Identities=23% Similarity=0.331 Sum_probs=176.4
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. +++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEE
Confidence 46999999987642 12459999999999999999999999999999999999876 458999999988
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~ 1002 (1119)
++ ...+++.++|+||++.+++ -|++||+.++. +.+. .++.++++++.+++.+. .|..+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~----~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQY----SREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCC----CHHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 64 3456788999999999886 59999998742 1111 23446777887776543 24445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+|||++ +....||++++|++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~--~~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRL--STIEKADEILVVED 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999985 479999999997 46778999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 899999984
No 401
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=317.17 Aligned_cols=209 Identities=24% Similarity=0.329 Sum_probs=169.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCCc---ccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV---PQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 258 (1119)
.++|+|+|++|++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35899999999999999999999999999999999998741 124899999998875432 2457999999998899
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccccc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADTM 334 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt~ 334 (1119)
.+||+||+.+..+...... +..+ ....++.+++.+||.+ ..++.
T Consensus 96 ~~tv~enl~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVK------------------SKKE--------------LQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccC------------------CHHH--------------HHHHHHHHHHHcCCCcchhhhhcCC
Confidence 9999999988643211000 0000 0123456788889853 35666
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+.+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|++
T Consensus 144 ~~~-----LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i 215 (250)
T PRK14247 144 AGK-----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFP-QQAARISDYV 215 (250)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCEE
Confidence 655 999999999999999999999999999999999999999999999853 67877777765 4778899999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999988764
No 402
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.4e-34 Score=356.02 Aligned_cols=209 Identities=27% Similarity=0.424 Sum_probs=172.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1119)
++++|+|+|++++||+.+||+||||||||||++.|.|.++|. +|+|.+||+++++... ++.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 356999999999999999999999999999999999999996 9999999999877653 578999999999998
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
-||+|||.++.. +.+.++..+++..++ .+..+. .|++..||.||+ .
T Consensus 417 ~TI~~NI~~g~~-------------------------~at~eei~~a~k~a~------~~d~I~--~lp~g~dt~vge-~ 462 (567)
T COG1132 417 GTIRENIALGRP-------------------------DATDEEIEEALKLAN------AHEFIA--NLPDGYDTIVGE-R 462 (567)
T ss_pred ccHHHHHhcCCC-------------------------CCCHHHHHHHHHHhC------hHHHHH--hCcccccceecC-C
Confidence 699999998632 111112222222211 122222 347789999994 4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
+..||||||||++||||++.+|+||+||||||+||+.+...|.+.++++.+ ++|+++..|.+ .+...+|+|++|++
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRl--sti~~aD~IiVl~~ 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL--STIKNADRIIVLDN 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccH--hHHHhCCEEEEEEC
Confidence 556999999999999999999999999999999999999999999997764 57888877776 34455999999999
Q ss_pred CeEEEEcChhHHHH
Q 001228 420 GQIVYQGPRDNVLE 433 (1119)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1119)
|+++++|+++++..
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999876
No 403
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=323.54 Aligned_cols=214 Identities=24% Similarity=0.316 Sum_probs=171.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.++++|+++.+. +..+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 477888776542 24599999999999999999999999999999999997542 13579999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++. |+.||+.+....+. ... ...+.++++++.+++.. ..++.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87531 2346789999999887775 99999987654321 111 23456788999998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||||+.+|+||||||||+|||+.++..+.++|+++++ ++|||++||+++ .+...+|+++++.
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999976 489999999975 4666789976543
Q ss_pred cCcEEEEecCC
Q 001228 1082 RGGRVIYAGPL 1092 (1119)
Q Consensus 1082 ~gG~v~~~g~~ 1092 (1119)
++|++++.|+.
T Consensus 254 ~~G~i~~~g~~ 264 (285)
T PRK14254 254 TGGELVEFDDT 264 (285)
T ss_pred eCCEEEEeCCH
Confidence 46899988874
No 404
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=318.30 Aligned_cols=209 Identities=21% Similarity=0.333 Sum_probs=168.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCC--C---cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNE--F---VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ ...+|+|+++|+++.. . ..++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 35999999999999999999999999999999999998762 1238999999998752 1 124579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++.+||.||+.++....+..... .+ ....++++++.+||. +..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSK------------------KE--------------LDERVEWALKKAALWDEVKDRLN 144 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCH------------------HH--------------HHHHHHHHHHHcCCccchhhhhc
Confidence 99999999998764322100000 00 011245677788874 2345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||
T Consensus 145 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d 216 (253)
T PRK14267 145 DYPSN-----LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSP-AQAARVSD 216 (253)
T ss_pred cChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHhhCC
Confidence 55554 999999999999999999999999999999999999999999999864 57888877765 47888999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++|++++.|+++++.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 217 YVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
No 405
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.5e-33 Score=352.87 Aligned_cols=212 Identities=27% Similarity=0.427 Sum_probs=176.3
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. +++.+|+|+||+|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 46899999987742 12359999999999999999999999999999999999876 458999999988
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.++||+|++.+++. |++||+.++. .+.+ ++.++++++..++.+.. |..++..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 64 35678899999999998875 9999998642 1122 33467777777765533 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|++||+++ ....||++++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999986 4899999999974 6688999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 899999873
No 406
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.2e-34 Score=316.95 Aligned_cols=209 Identities=25% Similarity=0.366 Sum_probs=171.9
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCCHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+|+||||+|++||+++|+|+||||||||+++|+|... .+|+|.++|.++.. ..+++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999864 27999999987632 23445689999998888889999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCeEEEe
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1031 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~-------~p~illLD 1031 (1119)
||+.+.... ........+.++++++.+++.+..++. +..||+|||||++||+||+. +|++||||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112223345678999999998766665 35799999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
|||+|||+.++..+++.|+++.++|.|||++||+++ ++...||++++|.+ |++++.|+... ....+.++|.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~~~~~~~~~ 231 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRDEVLTPENLAQVFG 231 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhCchHHHHHhC
Confidence 999999999999999999999877999999999975 47788999999975 78998887542 2223455554
No 407
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=323.53 Aligned_cols=216 Identities=22% Similarity=0.319 Sum_probs=172.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1119)
.+.++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+..|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 467788776542 2359999999999999999999999999999999999642 1 02579999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC----CccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++. ||.||+.+....+.. .......+.+.++++.+++. +..++.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1345679999999988775 999999886433211 11223345677888888874 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.. ++|||++||+++ .+...||++++|.
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |+++..|+..
T Consensus 256 ~-G~i~~~g~~~ 266 (286)
T PRK14275 256 E-GVLVEHAPTA 266 (286)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899988753
No 408
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-34 Score=313.54 Aligned_cols=201 Identities=23% Similarity=0.400 Sum_probs=170.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCHHHHHH
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999886 9999999998754322 357999999999999999999998
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1119)
+.... ... . .. .....++.+++.+||++..++.+.+ |||||
T Consensus 94 ~~~~~-~~~--~-----------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLK--L-----------------NA--------------AQREKLHAIARQMGIEDLLARLPGQ-----LSGGQ 134 (232)
T ss_pred ccccc-ccC--C-----------------CH--------------HHHHHHHHHHHHcCcHHHHhCCccc-----CCHHH
Confidence 75321 000 0 00 0012356788999999888888876 99999
Q ss_pred HHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcC
Q 001228 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~ 427 (1119)
||||+||++++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999987655778888877764 7788999999999999999999
Q ss_pred hhHHH
Q 001228 428 RDNVL 432 (1119)
Q Consensus 428 ~~~~~ 432 (1119)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88764
No 409
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.7e-34 Score=314.27 Aligned_cols=206 Identities=27% Similarity=0.415 Sum_probs=174.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++.+|++++|+||||||||||+++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 36999999999999999999999999999999999999886 9999999988754332 3579999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+.. .. + ....++.+++.++|....++.+++
T Consensus 90 ~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHP----------KA----------K--------------IKARVEELLELVQLEGLGDRYPNQ----- 130 (237)
T ss_pred HHHHHhHHHhcCCC----------HH----------H--------------HHHHHHHHHHHcCCHhHhhCChhh-----
Confidence 99998764322100 00 0 011245678889998778887776
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++..++|++++.|++. ++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644788888888764 77899999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988764
No 410
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-34 Score=326.42 Aligned_cols=214 Identities=17% Similarity=0.211 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-CCcceEEEECCccCCCCcc-------cceEEEeccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1119)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++. ...+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 56999999999999999999999999999999999998642 1238999999998765432 246999999975
Q ss_pred --CCCCCCHHHHHHHhhhhcCC-CchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc---
Q 001228 256 --HHGEMTVRETLDFSGRCLGV-GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--- 329 (1119)
Q Consensus 256 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--- 329 (1119)
+.|.+||.+++.+....... +..+ .+.+ +....+.++++.+||++
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~~~~-------------~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------QRFG-------------WRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------ccHH-------------HHHHHHHHHHHHCCCCChHH
Confidence 67889999999763221000 0000 0000 01123567899999974
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHh
Q 001228 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (1119)
Q Consensus 330 ~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 409 (1119)
..+..+.+ |||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ...+.+
T Consensus 151 ~~~~~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHd-l~~v~~ 224 (330)
T PRK15093 151 AMRSFPYE-----LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD-LQMLSQ 224 (330)
T ss_pred HHhCCchh-----CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-HHHHHH
Confidence 34566655 999999999999999999999999999999999999999999999987667777777655 458889
Q ss_pred hcCeEEEEcCCeEEEEcChhHHH
Q 001228 410 LFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 410 ~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++|+|++|++|++++.|+.+++.
T Consensus 225 ~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 225 WADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999988774
No 411
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=325.82 Aligned_cols=230 Identities=24% Similarity=0.340 Sum_probs=176.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.+.++|+++.++ ...+|+++||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 467777765442 24599999999999999999999999999999999997531 23589999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCC---------Ccc-HHHHHHHHHHHHHHcCCCC--
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS---------DVD-TKKRKMFVDEVMELVELKS-- 993 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~---------~~~-~~~~~~~~~~~l~~~~l~~-- 993 (1119)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .....+.++++++.+++.+
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 234567999999988777 49999998764321100 011 1223456788899998743
Q ss_pred --ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHH
Q 001228 994 --LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1071 (1119)
Q Consensus 994 --~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1071 (1119)
..+.. +..||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++++ +.|||++||+++ .+.
T Consensus 191 ~~~~~~~-----~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~ 263 (305)
T PRK14264 191 NDRLDDN-----ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAA 263 (305)
T ss_pred hHHhcCc-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHH
Confidence 22332 457999999999999999999999999999999999999999999999976 589999999975 466
Q ss_pred HhhceEeEEecCcEEEEecCCCC-----ChHHHHHHhh
Q 001228 1072 EAFDELLLLKRGGRVIYAGPLGH-----ESHKLIEYFE 1104 (1119)
Q Consensus 1072 ~~~d~~l~l~~gG~v~~~g~~~~-----~~~~l~~~f~ 1104 (1119)
+.||+++++.++|++++.|+..+ ....+.+||.
T Consensus 264 ~~~d~i~~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 301 (305)
T PRK14264 264 RISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYIT 301 (305)
T ss_pred HhcCEEEEEecCCEEEEeCCHHHHHhCcccHHHHHHhc
Confidence 78999754434589999988532 1123566666
No 412
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.5e-34 Score=350.63 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=172.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~~q~~~~~~~ 954 (1119)
++.+|+||||+|++||++||+||||||||||+++|+|...+++.+|+|.++|.++... ..++.+||++|++.+++.
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 3569999999999999999999999999999999999865322589999999876431 123569999999988899
Q ss_pred CCHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHcCCCCcc-ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 955 VTVYESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
+||.||+.+....+... ....+...+.++++++.+++.+.. ++. +.+|||||||||+|||||+.+|+||||||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iA~al~~~p~lllLDE 167 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLVEIAKALNKQARLLILDE 167 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 99999998764322111 112233445688999999997654 343 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
||+|||+.+...+.+.|++++++|+|||++||+++ .+...||++++|.+ |++++.|+...
T Consensus 168 Pt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 99999999999999999999888999999999975 56678999999975 78888887654
No 413
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-34 Score=319.63 Aligned_cols=209 Identities=25% Similarity=0.401 Sum_probs=172.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999886 999999998765432 235699999999888889
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||.||+.|+..... ... .. ... .....++.+++.+||++..++.+++
T Consensus 92 tv~~~i~~~~~~~~-----~~~----------~~-~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 138 (255)
T PRK11231 92 TVRELVAYGRSPWL-----SLW----------GR-LSA--------------EDNARVNQAMEQTRINHLADRRLTD--- 138 (255)
T ss_pred cHHHHHHhccchhh-----hhc----------cC-CCH--------------HHHHHHHHHHHHcCCHHHHcCCccc---
Confidence 99999987531000 000 00 000 0012346688899998888888876
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|
T Consensus 139 --LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~G 214 (255)
T PRK11231 139 --LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLN-QASRYCDHLVVLANG 214 (255)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHH-HHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999999865 3778888877654 788999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999987763
No 414
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.5e-34 Score=315.02 Aligned_cols=213 Identities=24% Similarity=0.294 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 257 (1119)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|+++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 455 8999999988754322 23489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 336 (1119)
+.+||+|++.+.......... . ...+. .+....++.+++.+||+ ...++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~----------~------~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARG----------E------EPLDL-----------LDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccc----------c------ccccH-----------HHHHHHHHHHHHHcCCchhhcccccc
Confidence 999999999875432110000 0 00000 00112356788999997 45666664
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh-cCeEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~i~ 415 (1119)
. .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++... +|+++
T Consensus 143 ~----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~-~~~~~~~d~i~ 216 (243)
T TIGR01978 143 E----GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQR-LLNYIKPDYVH 216 (243)
T ss_pred c----CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHH-HHHhhcCCeEE
Confidence 1 3999999999999999999999999999999999999999999999865 4678888877764 66677 89999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001228 416 LLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999987654
No 415
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.6e-33 Score=352.43 Aligned_cols=214 Identities=27% Similarity=0.410 Sum_probs=175.2
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
...++|+|++|.++. +++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 346899999987641 12358999999999999999999999999999999999876 45899999999
Q ss_pred cCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCC
Q 001228 932 PKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGL 1001 (1119)
Q Consensus 932 ~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~ 1001 (1119)
++.+ ..+++.++||+|++.+++ .|++||+.++. .+.+ ++.++++++..++.+.. |..++.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8643 567788999999998876 59999997642 1121 23456677777665432 333443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. ..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +++|+|++||+++ ....||++++|+
T Consensus 590 ~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 K-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 3 45799999999999999999999999999999999999999999999985 5899999999974 556799999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 666 ~-G~i~~~g~~~ 676 (694)
T TIGR01846 666 K-GQIAESGRHE 676 (694)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999853
No 416
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=317.99 Aligned_cols=216 Identities=25% Similarity=0.291 Sum_probs=172.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1119)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..... +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 467777775442 346999999999999999999999999999999999974321 1379999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++. ||+||+.+....+. .......++.+.++++.+++.+ ..++.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87632 2345679999999988875 99999998754331 1122333456778888888743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 699999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |+++..|+..
T Consensus 223 ~-G~i~~~g~~~ 233 (253)
T PRK14261 223 L-GKLIEFDKTT 233 (253)
T ss_pred C-CEEEEcCCHH
Confidence 5 7899888753
No 417
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.6e-34 Score=318.77 Aligned_cols=204 Identities=26% Similarity=0.375 Sum_probs=168.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCC--C
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDI--H 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~--~ 951 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++. +
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 469999999999999999999999999999999999865 458999999987532 124567999999973 5
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
.+..|+.|++.+..... ...........+.++++.+++. ...++. +..||+|||||++|||||+.+|+||||
T Consensus 103 ~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~Ge~qrl~laral~~~p~lllL 175 (268)
T PRK10419 103 NPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PPQLSGGQLQRVCLARALAVEPKLLIL 175 (268)
T ss_pred CCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 67789999987643211 1122334445688999999996 455554 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...||++++|. +|++++.|+..+
T Consensus 176 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~~ 238 (268)
T PRK10419 176 DEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NGQIVETQPVGD 238 (268)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CCEEeeeCChhh
Confidence 9999999999999999999998765 899999999975 4667899999997 479999988654
No 418
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-34 Score=316.19 Aligned_cols=206 Identities=20% Similarity=0.290 Sum_probs=165.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 58999999999999999999999999999999999986 2112389999999887421 1245799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----ccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 333 (1119)
+ +||+||+.+......... .. + ....++.+++.+||. +..++
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLS---------RA----------E--------------MDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCChhhHHHHhc
Confidence 7 899999987643211000 00 0 011245678888874 33455
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|+
T Consensus 153 ~~~~-----LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d~ 224 (260)
T PRK10744 153 SGYS-----LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNM-QQAARCSDY 224 (260)
T ss_pred CCCC-----CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCE
Confidence 5555 999999999999999999999999999999999999999999999853 57877777765 477889999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|+++..|+.+++.
T Consensus 225 i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 225 TAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
No 419
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=317.58 Aligned_cols=215 Identities=25% Similarity=0.336 Sum_probs=171.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--C-eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~g 930 (1119)
.+.++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|...+ . +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 367777776542 24599999999999999999999999999999999997641 1 2589999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. .......+.+.++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87531 234567999999988776 7999999876432211 112223355778899988842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999975 4677799999997
Q ss_pred cCcEEEEecCC
Q 001228 1082 RGGRVIYAGPL 1092 (1119)
Q Consensus 1082 ~gG~v~~~g~~ 1092 (1119)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 788888874
No 420
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.2e-35 Score=361.89 Aligned_cols=211 Identities=24% Similarity=0.409 Sum_probs=174.7
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|+++++. +++.+|+|+||+|+||+++||+|+||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3689999985432 1245999999999999999999999999999999999987 3 48999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.++||+|++.++.. |++||+.++. .+.+ ++.++++++..++.+.. |..+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~-----~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN-----PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC-----CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 64 45678899999999998865 9999998852 1222 23467777777765432 4445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
| .+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|++||++ +....+|++++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl--~~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQL--EDLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCh--HHHHhCCEEEEEeC
Confidence 3 4799999999999999999999999999999999999999999999885 589999999997 46778999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 559 -G~i~e~G~~~ 568 (588)
T PRK11174 559 -GQIVQQGDYA 568 (588)
T ss_pred -CeEeecCCHH
Confidence 8999999843
No 421
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-34 Score=286.24 Aligned_cols=205 Identities=23% Similarity=0.323 Sum_probs=177.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
..+|+|||+.|.+|+.++++||||||||||||++||..+|. .|+|.+||.+++.-. ..-|.|+|++.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCC--ccceeEeccCccchhhHHH
Confidence 56999999999999999999999999999999999999997 999999999887533 3458999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
+|++|+.+++|..... + ..+..+.+...||++..+..|=+ |
T Consensus 93 dNvafgL~l~Gi~k~~-------R---------------------------~~~a~q~l~~VgL~~~~~~~i~q-----L 133 (259)
T COG4525 93 DNVAFGLQLRGIEKAQ-------R---------------------------REIAHQMLALVGLEGAEHKYIWQ-----L 133 (259)
T ss_pred HHHHHHHHhcCCCHHH-------H---------------------------HHHHHHHHHHhCcccccccceEe-----e
Confidence 9999999988764221 1 12356788999999988888876 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC--Ce
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQ 421 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~--G~ 421 (1119)
||||||||.|||||..+|+.||||||+.+||+-+++++..+|-++.+..|+.+++.+ |...|..-+++++++|+. |+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliT-H~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT-HDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEe-ccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999998888787766665 556788889999999985 89
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
|+..-+++-...
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998777663333
No 422
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-34 Score=315.43 Aligned_cols=207 Identities=19% Similarity=0.315 Sum_probs=165.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 358999999999999999999999999999999999986 3222489999999987421 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++. ||+||+.|..+..+.... .+ ....++.+++.+||.+ ..+
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~l~ 150 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKNK-------------------KK--------------LQEIVEKSLKDVALWDEVKDRLH 150 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhhhhhh
Confidence 875 999999875432210000 00 0112355677788753 235
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.. ++|+|++.|++. ++.+++|
T Consensus 151 ~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~d 222 (259)
T PRK14274 151 TQALS-----LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQ-QAARVSD 222 (259)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-HHHHhCC
Confidence 55554 999999999999999999999999999999999999999999999864 578888877654 7888999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|+++.+|+++++.
T Consensus 223 ~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 223 QTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEEEECCEEEEECCHHHHh
Confidence 99999999999999998864
No 423
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-34 Score=324.05 Aligned_cols=211 Identities=20% Similarity=0.308 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
.++|+|+|++|++|++++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999998531 12389999999988532 235679999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++ .||+||+.|+....+.. .. +. ....+..+++.++|.+..++.++
T Consensus 175 ~~-~ti~eNi~~~~~~~~~~----------~~----------~~-------------~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGIN----------DR----------KI-------------LEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred CC-CcHHHHHHhHHHhcCCC----------hH----------HH-------------HHHHHHHHHHHcCCcchhhhhhh
Confidence 85 79999999864321100 00 00 01123456777777554445554
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ ....|||||||||+||||++.+|+||+|||||+|||+.+...+.++|+++.+ +.|+|++.|++ ..+.+++|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEE
Confidence 3 3455999999999999999999999999999999999999999999998865 57877777765 477788999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001228 417 LSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1119)
|++|+++..|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999874
No 424
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.2e-34 Score=314.45 Aligned_cols=210 Identities=22% Similarity=0.358 Sum_probs=168.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~i~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLA-------------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEee-------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 46777777543 23469999999999999999999999999999999999765 4589999999765
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCH
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ..+++.++|++|++.+++ .|++||+.+....+.. . ...+.+.++++.+++. ...++. +..||+
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 234567999999988876 4999999875433211 1 1224567899999995 355554 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ .|.|||++||+++ .+ ..||++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 999999999999999999999999999999999999999999875 4899999999975 34 56999999964444444
Q ss_pred ecC
Q 001228 1089 AGP 1091 (1119)
Q Consensus 1089 ~g~ 1091 (1119)
+|.
T Consensus 219 ~~~ 221 (225)
T PRK10247 219 EAR 221 (225)
T ss_pred hhh
Confidence 443
No 425
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=8.2e-35 Score=318.68 Aligned_cols=196 Identities=23% Similarity=0.395 Sum_probs=154.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 458999999999999999999999999999999999865 458999999987532 334667999999987764 69
Q ss_pred HHHHHHHHHHhhcCCCccHHHHH-----HHHHHHHHHc--CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRK-----MFVDEVMELV--ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
|.||+.+... ........ ..+++.++.+ ++....+.. +.+||+|||||++|||||+.+|++||
T Consensus 92 v~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999976421 01111100 1122333333 333333332 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|||||+|||+.++..+.+.|+++. +|+|||++||+++ .+ ..||++++|.+ |++++.|+.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999986 4899999999975 34 56999999975 789988874
No 426
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.4e-34 Score=350.86 Aligned_cols=212 Identities=21% Similarity=0.320 Sum_probs=178.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367777776442 3469999999999999999999999999999999999865 4589999999875
Q ss_pred Ch---hhh-cceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 NQ---ETF-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~-~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ... ++.+||++|++.+++.+||+||+.+.... .....+.+.++++.+++.+..++.+ .+|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 32 122 24699999999999999999999875311 1223456788999999987777663 57999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|.+ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999975 46678999999975 789998
Q ss_pred cCCCC
Q 001228 1090 GPLGH 1094 (1119)
Q Consensus 1090 g~~~~ 1094 (1119)
|+...
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 87653
No 427
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.8e-34 Score=318.02 Aligned_cols=209 Identities=28% Similarity=0.421 Sum_probs=172.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 46999999999999999999999999999999999999886 9999999988765322 34699999998778889
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.+...... . . .. .+..+ ....++.+++.+||.+..++.+++
T Consensus 91 tv~e~l~~~~~~~~-----~----~------~~-~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (256)
T TIGR03873 91 TVRDVVALGRIPHR-----S----L------WA-GDSPH--------------DAAVVDRALARTELSHLADRDMST--- 137 (256)
T ss_pred CHHHHHHhcchhhh-----h----h------cc-CCCHH--------------HHHHHHHHHHHcCcHhhhcCCccc---
Confidence 99999987421000 0 0 00 00000 011346688899998878888876
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ++.++||+|++|++|
T Consensus 138 --LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 138 --LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVVVLDGG 213 (256)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999875 3678888877764 788999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
+++.+|+.+++.
T Consensus 214 ~i~~~g~~~~~~ 225 (256)
T TIGR03873 214 RVVAAGPPREVL 225 (256)
T ss_pred CEEEecCHHHhh
Confidence 999999988763
No 428
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.2e-34 Score=312.07 Aligned_cols=195 Identities=25% Similarity=0.353 Sum_probs=162.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-----cccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 258 (1119)
+.+|+|+|++++||++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 45999999999999999999999999999999999999886 99999999877421 12467999999999999
Q ss_pred CCCHHHHHHHhhhh-cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 259 EMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
.+||+||+.+.... .+.. .. +....++.+++.+||++..++.+.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 135 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------KA------------------------EAEERALELLEKVGLADKADAYPAQ 135 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHhHhhhCccc
Confidence 99999999875321 1100 00 0011345678889998888888876
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|
T Consensus 136 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l 208 (213)
T cd03262 136 -----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFM 208 (213)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999876 467877776655 5788999999999
Q ss_pred cCCeE
Q 001228 418 SEGQI 422 (1119)
Q Consensus 418 ~~G~i 422 (1119)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
No 429
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=349.86 Aligned_cols=215 Identities=29% Similarity=0.355 Sum_probs=176.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~ 69 (501)
T PRK11288 5 LSFDGIGKTF-------------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMR 69 (501)
T ss_pred EEEeeeEEEE-------------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 5677776543 23469999999999999999999999999999999999865 45899999998753
Q ss_pred h----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 935 Q----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
. ..+++.+||++|++.+++.+||.||+.+....+........+..+.+.++++.+++.+..++. +.+||||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 144 (501)
T PRK11288 70 FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIG 144 (501)
T ss_pred CCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHH
Confidence 2 224567999999998899999999998853211111112334455688999999998766665 4579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||++|||+|+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||+++ .+...||++++|.+ |+++..+
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~ 222 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeec
Confidence 999999999999999999999999999999999999999999878999999999975 56678999999975 7887766
Q ss_pred C
Q 001228 1091 P 1091 (1119)
Q Consensus 1091 ~ 1091 (1119)
+
T Consensus 223 ~ 223 (501)
T PRK11288 223 D 223 (501)
T ss_pred C
Confidence 4
No 430
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-34 Score=308.89 Aligned_cols=212 Identities=24% Similarity=0.322 Sum_probs=172.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-C-CCCcceEEEECCccCCCCcc-------cceEEEeccC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-K-DLRASGKITYCGHELNEFVP-------QRTCAYISQH 253 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~-~-~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~ 253 (1119)
...+++||||.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-.... .+.|+||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999998 4 34567999999997654432 2579999999
Q ss_pred C--CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc-
Q 001228 254 D--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC- 330 (1119)
Q Consensus 254 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~- 330 (1119)
+ .+.|.+||.+.+.-..+...... . ..+....+.++|+.+||++-
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~------------------------~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------S------------------------KKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------h------------------------hHHHHHHHHHHHHHcCCCCHH
Confidence 6 67899999999865544321100 0 01112345678999999863
Q ss_pred --ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHH
Q 001228 331 --ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (1119)
Q Consensus 331 --~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 408 (1119)
.+.+. ..|||||||||.||.||+.+|++|+.|||||+||..++.+|++.|+++.++.+.++|+. +|...-+.
T Consensus 145 ~~~~~YP-----helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilI-THDl~vva 218 (316)
T COG0444 145 RRLKSYP-----HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILI-THDLGVVA 218 (316)
T ss_pred HHHhhCC-----cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHH
Confidence 34444 45999999999999999999999999999999999999999999999998766665555 45566899
Q ss_pred hhcCeEEEEcCCeEEEEcChhHHH
Q 001228 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 409 ~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++||+|+||+.|+||+.|+.+++.
T Consensus 219 ~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 219 EIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred HhcceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999999874
No 431
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-34 Score=324.33 Aligned_cols=206 Identities=19% Similarity=0.301 Sum_probs=168.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC--------CcccceEEEeccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--------FVPQRTCAYISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--------~~~~~~~~yv~Q~d~ 255 (1119)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. ...++.++|++|++.
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 35899999999999999999999999999999999999886 9999999987642 112457999999973
Q ss_pred C-CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccc
Q 001228 256 H-HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1119)
Q Consensus 256 ~-~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 333 (1119)
. +...||+||+.|.....+.. .. + ....++.+++.++|+ +..++
T Consensus 101 ~~~~~~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~ll~~~~L~~~~~~~ 146 (289)
T PRK13645 101 YQLFQETIEKDIAFGPVNLGEN----------KQ----------E--------------AYKKVPELLKLVQLPEDYVKR 146 (289)
T ss_pred hhhhhhHHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhHhcC
Confidence 2 22469999998854321100 00 0 011245678889995 56777
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||+
T Consensus 147 ~~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~ 220 (289)
T PRK13645 147 SPFE-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADE 220 (289)
T ss_pred Chhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCE
Confidence 7766 9999999999999999999999999999999999999999999998765577888877765 478899999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 221 VIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988764
No 432
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.6e-34 Score=355.70 Aligned_cols=206 Identities=24% Similarity=0.325 Sum_probs=171.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1119)
++|+|+|++++||+.++|+|+||||||||+++|+|+++|. +|+|.+||+++++... ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 5999999999999999999999999999999999999997 9999999999876543 5789999999999986 9
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
++|||.++.. . .+.++...++.+. .++.++ .|++..||.+|+ .+.
T Consensus 431 i~~NI~~~~~---~--------------------~d~~i~~a~~~~g---------l~~~i~--~lp~Gldt~i~e-~g~ 475 (592)
T PRK10790 431 FLANVTLGRD---I--------------------SEEQVWQALETVQ---------LAELAR--SLPDGLYTPLGE-QGN 475 (592)
T ss_pred HHHHHHhCCC---C--------------------CHHHHHHHHHHcC---------cHHHHH--hccccccccccC-CCC
Confidence 9999988521 0 0111111111111 111222 256778999987 345
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
.||||||||++|||||+.+|+|++||||||+||+.+...|.+.|+++.. ++|+|+..|++ +....||+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998754 68999998887 5677899999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
++..|+++++.+
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
No 433
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=355.30 Aligned_cols=209 Identities=23% Similarity=0.372 Sum_probs=171.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 45999999999999999999999999999999999999997 9999999999876543 467999999999997 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++..- +.+.++..+++...+ .+..++ .|++..||.+|+. +
T Consensus 432 Ti~~Ni~~~~~~------------------------~~~~~~i~~al~~~~------l~~~i~--~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYARTE------------------------QYSREQIEEAARMAY------AMDFIN--KMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCCC------------------------CCCHHHHHHHHHHhC------cHHHHH--hcccccCceeCCC-C
Confidence 999999874210 001111111111111 111222 3677889999963 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
+.||||||||++|||||+.+|++++||||||+||+.+...+.+.|+++.. ++|+|++.|++ +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 66999999999999999999999999999999999999999999998753 68999988887 567889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++.+|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
No 434
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-34 Score=315.93 Aligned_cols=215 Identities=23% Similarity=0.319 Sum_probs=169.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--CC-eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~g-~~~G~i~i~g 930 (1119)
.+.++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 356777765432 2469999999999999999999999999999999999643 11 2479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ......++.+.+.++.+++.. ..++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87631 234567999999988887 6999999876433221 111222345667788887642 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 589999999975 5667899999997
Q ss_pred cCcEEEEecCC
Q 001228 1082 RGGRVIYAGPL 1092 (1119)
Q Consensus 1082 ~gG~v~~~g~~ 1092 (1119)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 789888864
No 435
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-34 Score=319.84 Aligned_cols=216 Identities=19% Similarity=0.250 Sum_probs=172.8
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEEC
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKIS 929 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~ 929 (1119)
..+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..... +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3578888876542 246999999999999999999999999999999999975311 247999999
Q ss_pred CccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccC
Q 001228 930 GYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVG 1000 (1119)
Q Consensus 930 g~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~ 1000 (1119)
|.++.. ..+++.++|++|++.+++. |+.||+.+....+. .. ...++.+.++++.+++.. ..++.
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 158 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK-- 158 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC--
Confidence 987531 2345679999999887764 99999987643321 11 122344667788887742 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+...||++++|
T Consensus 159 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 233 (274)
T PRK14265 159 ---GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFF 233 (274)
T ss_pred ---cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999985 577889999999
Q ss_pred e--------cCcEEEEecCCC
Q 001228 1081 K--------RGGRVIYAGPLG 1093 (1119)
Q Consensus 1081 ~--------~gG~v~~~g~~~ 1093 (1119)
+ +.|++++.|+..
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred ecccccccccCceEEEeCCHH
Confidence 7 268999999864
No 436
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.9e-34 Score=307.29 Aligned_cols=199 Identities=22% Similarity=0.287 Sum_probs=166.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999987 999999999875422 3467999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.+...... . ... .....++.+++.+||++..++.+.+ ||
T Consensus 90 n~~~~~~~~~-~-------------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-K-------------------LNA--------------EQQEKVVDAAQQVGIADYLDRLPEQ-----LS 130 (213)
T ss_pred HHHhHhhccC-C-------------------ccH--------------HHHHHHHHHHHHcCcHHHhhCCccc-----CC
Confidence 9976432100 0 000 0012345688999998888888876 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998765567887777665 47788999999999999998
Q ss_pred EcC
Q 001228 425 QGP 427 (1119)
Q Consensus 425 ~G~ 427 (1119)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
No 437
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-34 Score=317.33 Aligned_cols=208 Identities=20% Similarity=0.301 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|+.|+||++++|+|||||||||||++|+|.++|. ...+|+|+++|+++... ..++.++|++|++.+
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 35999999999999999999999999999999999998741 11389999999887531 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++. ||.||+.|.....+... +..+ ....++.+++.+||.+ ..+
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 158 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLAR------------------SKAE--------------LDEIVETSLRKAGLWEEVKDRLH 158 (267)
T ss_pred CCC-cHHHHHHHHHHhccccc------------------chHH--------------HHHHHHHHHHHcCCchhhhHHhh
Confidence 875 99999988643221100 0000 0112456788889864 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 159 ~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d 230 (267)
T PRK14235 159 EPGTG-----LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQ 230 (267)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCC
Confidence 55554 999999999999999999999999999999999999999999999864 57877777765 47789999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|+++.+|+.+++.
T Consensus 231 ~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 231 RTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 438
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.5e-34 Score=362.99 Aligned_cols=206 Identities=24% Similarity=0.324 Sum_probs=169.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+.. .++.++||+|++.+|+ .
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-G 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-c
Confidence 45899999999999999999999999999999999999997 999999999987654 3578999999999996 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++.. +.+.++..+++...+ .+..++ .|++..||.+|+ .+
T Consensus 568 Ti~eNi~l~~~-------------------------~~~~~~i~~al~~~~------l~~~i~--~lp~gl~t~i~e-~G 613 (710)
T TIGR03796 568 TVRDNLTLWDP-------------------------TIPDADLVRACKDAA------IHDVIT--SRPGGYDAELAE-GG 613 (710)
T ss_pred cHHHHhhCCCC-------------------------CCCHHHHHHHHHHhC------CHHHHH--hCcCcccceecc-CC
Confidence 99999976421 111111122221111 111222 366778999996 45
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
.+||||||||++||||++.+|++++||||||+||+.+...|.+.|++ .++|+|++.|++ +....||+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999986 378999988886 466789999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++.+|+++++.+
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
No 439
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.9e-34 Score=315.55 Aligned_cols=206 Identities=23% Similarity=0.283 Sum_probs=167.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC-CcceEEEECCccCCCCcc-cceEEEeccCCC--CCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-QRTCAYISQHDL--HHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 260 (1119)
++|+|+|+++++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++..... ++.++||+|++. +.+.+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 48999999999999999999999999999999999998711 138999999998754322 357999999974 45668
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc---cccccccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---CADTMVGD 337 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~vg~ 337 (1119)
|+.+++.+.++..+.. . ....+..+++.+||.+ ..++.+++
T Consensus 97 ~~~~~~~~~~~~~~~~---------------------~---------------~~~~~~~~l~~~~l~~~~~~~~~~~~~ 140 (254)
T PRK10418 97 TMHTHARETCLALGKP---------------------A---------------DDATLTAALEAVGLENAARVLKLYPFE 140 (254)
T ss_pred cHHHHHHHHHHHcCCC---------------------h---------------HHHHHHHHHHHcCCCChhhhhhcCCcc
Confidence 9999986643221100 0 0012456788899976 35666665
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.+++|++++|
T Consensus 141 -----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l 214 (254)
T PRK10418 141 -----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVM 214 (254)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998765577888877765 4677899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
No 440
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-35 Score=305.35 Aligned_cols=196 Identities=27% Similarity=0.437 Sum_probs=170.9
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------ccceEEEeccCCCCCCCCC
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 261 (1119)
++++..+.-.+|||-|+||||||||+|+|+|..+|+ +|.|.+||..+.+.. .+|.+|||+|+..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 577777775799999999999999999999999998 999999998764322 2588999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+-||.|+.... .....|++...||++|..+.+...
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~P~~---- 128 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRYPGT---- 128 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhCCCc----
Confidence 999999974321 011246789999999999999987
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+|||||++.|++|+||||.+.||-....+++-+|.+++++.+..++.. .|-..|+.+++|+|++|++|+
T Consensus 129 -LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYV-SHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV-SHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred -cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEE-ecCHHHHHhhhheEEEecCCe
Confidence 999999999999999999999999999999999999999999999998776555554 555679999999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+...|+.+++..
T Consensus 207 V~A~g~~e~v~~ 218 (352)
T COG4148 207 VKASGPLEEVWG 218 (352)
T ss_pred EEecCcHHHHhc
Confidence 999999998753
No 441
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-34 Score=319.14 Aligned_cols=216 Identities=22% Similarity=0.243 Sum_probs=171.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1119)
.+.++|+++.++ +..+|+|+||+|++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 478888876542 2358999999999999999999999999999999999753 1 13589999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC----CccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ........+.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87631 234567999999988877 499999987643221 111222334567777777542 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+...||++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 241 ~-G~i~~~g~~~ 251 (271)
T PRK14238 241 N-GYVNEYDDTD 251 (271)
T ss_pred C-CEEEEeCCHH
Confidence 5 7898888753
No 442
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.3e-35 Score=358.18 Aligned_cols=213 Identities=28% Similarity=0.423 Sum_probs=177.1
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
...++|+|++|.++. ++.+|+|+||+++|||++||+||||||||||++.|+|..+ +.+|+|.+||.
T Consensus 326 ~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~ 391 (567)
T COG1132 326 IGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGI 391 (567)
T ss_pred CCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCE
Confidence 345899999987752 3469999999999999999999999999999999999876 45899999998
Q ss_pred cCC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-------ccccccCC
Q 001228 932 PKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-------LNDSMVGL 1001 (1119)
Q Consensus 932 ~~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~ 1001 (1119)
+++ ...+++.++|++|++.++. -||+||+.++.. +... +.++++++..++.+ -.|..+|.
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge 461 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATD----EEIEEALKLANAHEFIANLPDGYDTIVGE 461 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccceecC
Confidence 864 4667889999999999988 799999998631 1222 33555555554433 24566664
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. ..+||||||||++||||++++|+||+||||||+||+++.+.|++.++++. +|+|+|+++|+++ ....+|++++|+
T Consensus 462 ~-G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~ 537 (567)
T COG1132 462 R-GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLD 537 (567)
T ss_pred C-CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEE
Confidence 3 45799999999999999999999999999999999999999999999887 5799999999974 566799999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 538 ~-G~i~e~G~h~ 548 (567)
T COG1132 538 N-GRIVERGTHE 548 (567)
T ss_pred C-CEEEEecCHH
Confidence 5 7899999864
No 443
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4e-34 Score=316.32 Aligned_cols=202 Identities=27% Similarity=0.319 Sum_probs=162.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc-----CCh---hh----hcceEEEEcc
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-----KNQ---ET----FARVSGYCEQ 947 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~-----~~~---~~----~~~~~gy~~q 947 (1119)
..+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.+ +.. .. .++.++|++|
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 458999999999999999999999999999999999876 458999999876 321 11 2346899999
Q ss_pred CCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001228 948 NDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024 (1119)
Q Consensus 948 ~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 1024 (1119)
++. ..+..|+.|++.+..... . ........+.+.++++.+++. ...++. +..||+|||||++|||||+.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~LSgG~~qrv~laral~~~ 166 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL-----PRAFSGGMQQRLQIARNLVTR 166 (253)
T ss_pred CcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC-----chhcCHHHHHHHHHHHHHhcC
Confidence 975 345678999986542211 1 011123345678899999996 355554 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1025 p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|++|||||||+|||+.+++.+++.|+++.++ |.|||++||+++ .+...+|++++|.+ |++++.|+.
T Consensus 167 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLT 233 (253)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999998654 899999999975 46667999999975 789988874
No 444
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=317.88 Aligned_cols=214 Identities=21% Similarity=0.270 Sum_probs=170.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--C-eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~g 930 (1119)
.+.++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 467788776542 24599999999999999999999999999999999997431 1 2579999999
Q ss_pred ccCC-----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~-----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++. ....++.++|++|++.+++ .|+.||+.+....+. .. ....+.+.++++.+++.+ ..+..
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 148 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQS--- 148 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCC---
Confidence 8752 2234567999999988777 499999987653321 11 122345667778877742 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++...||++++|+
T Consensus 149 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~ 224 (264)
T PRK14243 149 --GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFN 224 (264)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999999975 589999999975 5788899999997
Q ss_pred c--------CcEEEEecCC
Q 001228 1082 R--------GGRVIYAGPL 1092 (1119)
Q Consensus 1082 ~--------gG~v~~~g~~ 1092 (1119)
+ .|++++.|+.
T Consensus 225 ~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 225 VELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccccccCceEEEeCCH
Confidence 2 5899999875
No 445
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.1e-34 Score=319.74 Aligned_cols=212 Identities=22% Similarity=0.297 Sum_probs=171.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.|+|+++.++. +...+|+||||+|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3678888765531 12358999999999999999999999999999999999864 369999999876
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCC------CCC
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL------PGV 1004 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~ 1004 (1119)
.. ..+++.++|++|++.+++. |++||+..... . .++.++++++.++|.+..++.++. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~----~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------W----SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------C----CHHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 42 3456789999999998875 99999953210 1 123467888999997765554321 123
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
..||+|||||++|||||+.+|+||+|||||++||+.+...+++.|++.. .++|||+|+|+++ ....||++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEecC-C
Confidence 4699999999999999999999999999999999999999999999875 4899999999974 4456999999975 7
Q ss_pred EEEEecCCCC
Q 001228 1085 RVIYAGPLGH 1094 (1119)
Q Consensus 1085 ~v~~~g~~~~ 1094 (1119)
++++.|++.+
T Consensus 213 ~i~~~g~~~~ 222 (275)
T cd03289 213 KVRQYDSIQK 222 (275)
T ss_pred eEeecCCHHH
Confidence 8999998643
No 446
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=6e-34 Score=314.79 Aligned_cols=220 Identities=24% Similarity=0.304 Sum_probs=171.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.++ ++.+|+||||+|++||++||+|+||||||||+++|+|.....+..|+|.++|.++.
T Consensus 8 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~ 74 (252)
T CHL00131 8 LEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESIL 74 (252)
T ss_pred EEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcc
Confidence 56777765432 24599999999999999999999999999999999996211145899999998754
Q ss_pred h---hhhcc-eEEEEccCCCCCCCCCHHHHHHHHHHhhcC----CCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCC
Q 001228 935 Q---ETFAR-VSGYCEQNDIHSPYVTVYESLLYSAWLRLS----SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVS 1005 (1119)
Q Consensus 935 ~---~~~~~-~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~----~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~ 1005 (1119)
. ....+ .++|++|++.+++.+|+.+++.+....... .+.......+.+.++++.+++. ...++... .
T Consensus 75 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 150 (252)
T CHL00131 75 DLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----E 150 (252)
T ss_pred cCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----c
Confidence 3 12222 478999999999999999998765321110 0111222335678889999996 34555431 2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-hceEeEEecCc
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGG 1084 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~gG 1084 (1119)
.||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|. +|
T Consensus 151 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~G 228 (252)
T CHL00131 151 GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-NG 228 (252)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-CC
Confidence 49999999999999999999999999999999999999999999999877999999999975 34444 79999996 58
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
++++.|+..
T Consensus 229 ~i~~~~~~~ 237 (252)
T CHL00131 229 KIIKTGDAE 237 (252)
T ss_pred EEEEecChh
Confidence 999998754
No 447
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-34 Score=315.17 Aligned_cols=208 Identities=22% Similarity=0.328 Sum_probs=167.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 359999999999999999999999999999999999986411 1389999999876421 124579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++.+||+||+.++....+... . .. ....++.+++.+||. +..+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~---------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRN---------K----------KD--------------LDELVEKSLRGANLWNEVKDRLD 143 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCC---------H----------HH--------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 999999999987643221000 0 00 011345677888874 3445
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.+++|
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~d 215 (258)
T PRK14241 144 KPGGG-----LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVSD 215 (258)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCC
Confidence 55555 999999999999999999999999999999999999999999999864 57877777665 47889999
Q ss_pred eEEEEc------CCeEEEEcChhHHH
Q 001228 413 DIILLS------EGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~------~G~iv~~G~~~~~~ 432 (1119)
+|++|+ +|++++.|+++++.
T Consensus 216 ~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 216 QTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEEecccCCCCceEEecCCHHHHH
Confidence 999997 79999999988764
No 448
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-34 Score=312.62 Aligned_cols=208 Identities=19% Similarity=0.289 Sum_probs=166.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|+++++|++++|+||||||||||+++|+|.+++....+|+|.++|+++.... .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999997531123899999999876432 2457999999998887 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccccccc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADTMVG 336 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt~vg 336 (1119)
||+||+.++...++.. ...+ .....++.+++.+||.. ..+..+
T Consensus 94 tv~eni~~~~~~~~~~-------------------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~~- 140 (246)
T PRK14269 94 SIYENISYAPKLHGMI-------------------KNKD-------------EEEALVVDCLQKVGLFEEVKDKLKQNA- 140 (246)
T ss_pred cHHHHhhhHHhhcCcc-------------------cChH-------------HHHHHHHHHHHHcCCChhhhHHhcCCc-
Confidence 9999998864322100 0000 00112456788888853 234444
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|++++.|++ .++.+++|++++
T Consensus 141 ----~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~~ 213 (246)
T PRK14269 141 ----LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTAF 213 (246)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEEE
Confidence 44999999999999999999999999999999999999999999999864 67877777765 478889999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001228 417 LSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1119)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 214 FHLGELIEFGESKEFF 229 (246)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999988764
No 449
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-34 Score=313.23 Aligned_cols=207 Identities=18% Similarity=0.320 Sum_probs=166.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 45899999999999999999999999999999999998641 12489999999987532 124569999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++ +||+||+.|.....+.... . + ....++.+++.+||. +..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------K----------E--------------LDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------H----------H--------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 87 8999999886432211000 0 0 011234567788774 3345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++.+ +.|+|++.|++ .++.++||
T Consensus 143 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d 214 (251)
T PRK14270 143 KSALK-----LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSD 214 (251)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcC
Confidence 55554 999999999999999999999999999999999999999999999865 47877777765 47889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+.+++.
T Consensus 215 ~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEECCeEEEeCCHHHHh
Confidence 99999999999999998874
No 450
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-35 Score=321.37 Aligned_cols=251 Identities=24% Similarity=0.408 Sum_probs=200.6
Q ss_pred HHHhhhhhcHHHHHHHHHHHhhhc------CCCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCC
Q 001228 106 SILKIVEEDNEKFLKRIRHRTDRV------GIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPS 179 (1119)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~ 179 (1119)
|.++..=-|-|++++-+++..+-+ .+..++-.|.|+|++..-
T Consensus 500 R~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y-------------------------------- 547 (790)
T KOG0056|consen 500 RSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAY-------------------------------- 547 (790)
T ss_pred HHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEec--------------------------------
Confidence 334444457888888777665533 233455678888877652
Q ss_pred CcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC---cccceEEEeccCCCC
Q 001228 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---VPQRTCAYISQHDLH 256 (1119)
Q Consensus 180 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~d~~ 256 (1119)
...+++|+||||++.||+.+||+||||+||||+|+.|....+-+ +|.|+++|+++... ..++.||.||||..+
T Consensus 548 -~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL 623 (790)
T KOG0056|consen 548 -DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL 623 (790)
T ss_pred -CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCccee
Confidence 23567999999999999999999999999999999999999876 99999999998654 346789999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
|.+ |+..||.|+. |+...++..+++..+ .+-| +++++++.++|+||
T Consensus 624 FNd-TI~yNIryak-------------------------~~AsneevyaAAkAA-----~IHd---rIl~fPegY~t~VG 669 (790)
T KOG0056|consen 624 FND-TILYNIRYAK-------------------------PSASNEEVYAAAKAA-----QIHD---RILQFPEGYNTRVG 669 (790)
T ss_pred ecc-eeeeheeecC-------------------------CCCChHHHHHHHHHh-----hHHH---HHhcCchhhhhhhh
Confidence 976 9999998852 222222222222211 1122 46889999999999
Q ss_pred CccCCC--CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 337 DEMRRG--ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 337 ~~~~rG--LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+ || |||||||||+|||+++..|.+++|||.||+||..+..+|..+|.+++. ++|.|+.-|.-+ +.-.+|.|
T Consensus 670 E---RGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLS--TivnAD~I 742 (790)
T KOG0056|consen 670 E---RGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLS--TIVNADLI 742 (790)
T ss_pred h---cccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeeh--heecccEE
Confidence 8 66 799999999999999999999999999999999999999999999986 677777767654 55679999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
+++++|+|++.|.++|++.
T Consensus 743 Lvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 743 LVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEeCCeEeecCcHHHHHh
Confidence 9999999999999999875
No 451
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=313.18 Aligned_cols=207 Identities=20% Similarity=0.282 Sum_probs=165.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35899999999999999999999999999999999998641 12489999999987532 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++ .||+||+.++.+..+... ..+ ....+..+++.+||.+ ..+
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD-------------------KKV--------------LDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC-------------------HHH--------------HHHHHHHHHHHcCCCchhhhhhc
Confidence 87 599999988643211000 000 0112456778888853 334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
..++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++. ++.++||
T Consensus 159 ~~~~-----~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d 230 (267)
T PRK14237 159 KSAL-----TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNMQ-QAARASD 230 (267)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhcC
Confidence 4444 4999999999999999999999999999999999999999999999853 578777777654 7889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+.+++.
T Consensus 231 ~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 231 YTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
No 452
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-34 Score=332.37 Aligned_cols=203 Identities=21% Similarity=0.287 Sum_probs=164.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
+.+|+||||+|++|+++||+|+||||||||+++|+|... +.+|+|.++|.+. ++.+.+.+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 469999999999999999999999999999999999876 4589999998641 1222344566789999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
++.+...... ....+..+.+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+|||+
T Consensus 105 nL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 9987543321 22333445677899999998777766 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChHHHHHHhh
Q 001228 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~~l~~~f~ 1104 (1119)
.++..+++.|++++++|+|||++||+++ .+...||++++|.+ |++++.|+..+......+|++
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~el~~~~~~~~~ 239 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIKEVVDHYDEFLK 239 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHhhHHHHHH
Confidence 9999999999999877999999999975 56678999999975 889998876433333444444
No 453
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.4e-33 Score=351.06 Aligned_cols=211 Identities=27% Similarity=0.391 Sum_probs=173.0
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++.. +++.+|+|+||+|+|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEE
Confidence 468999999887521 12469999999999999999999999999999999999876 458999999988
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
++ ...+++.++|++|++.++. -|++||+.++. .+.+ ++.++++++..++.+.. |..+|..
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 64 3557788999999998876 59999998752 1121 34467888888876543 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+++.+.|++ .. ..+++|+|+|||++ +....+|++++|++
T Consensus 615 -G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl--~~i~~aD~IivL~~ 688 (711)
T TIGR00958 615 -GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRL--STVERADQILVLKK 688 (711)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccH--HHHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999998 22 23589999999996 46778999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 689 -G~ive~Gt~ 697 (711)
T TIGR00958 689 -GSVVEMGTH 697 (711)
T ss_pred -CEEEEeeCH
Confidence 899999984
No 454
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.4e-34 Score=308.09 Aligned_cols=186 Identities=29% Similarity=0.365 Sum_probs=156.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+..+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+......++.++|++|++.+++..|+.
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHH
Confidence 3469999999999999999999999999999999999865 45899999998753222566799999998888899999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. .. .+.+.++++.+++.+..+.. +..||+|||||++|||||+.+|++|||||||+|||
T Consensus 92 ~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 159 (207)
T PRK13539 92 ENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD 159 (207)
T ss_pred HHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99987543321 11 23478899999997766555 34799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+...+++.|++++++|+|||++||+++ .... |+++.+.
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tiii~sH~~~--~~~~-~~~~~~~ 199 (207)
T PRK13539 160 AAAVALFAELIRAHLAQGGIVIAATHIPL--GLPG-ARELDLG 199 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCch--hhcc-CcEEeec
Confidence 99999999999998777999999999964 3444 8887774
No 455
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-34 Score=316.12 Aligned_cols=205 Identities=19% Similarity=0.281 Sum_probs=162.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 358999999999999999999999999999999999986310 1389999999876421 123569999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++ .||+||+.|.+...+.. + +. ...++.+++.+++. +..+
T Consensus 106 ~~-~tv~enl~~~~~~~~~~---~------------------~~--------------~~~~~~~l~~~~l~~~l~~~~~ 149 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYT---G------------------DM--------------DELVERSLRKAAVWDECKDKLN 149 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCc---H------------------HH--------------HHHHHHHHHHhCCcchhhhhhC
Confidence 88 49999998865432110 0 00 01123456666653 3345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+.+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 150 ~~~~~-----LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d 221 (269)
T PRK14259 150 ESGYS-----LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVSD 221 (269)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcC
Confidence 55554 999999999999999999999999999999999999999999999854 57777777665 58889999
Q ss_pred eEEEEcC-----------CeEEEEcChhHHH
Q 001228 413 DIILLSE-----------GQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~-----------G~iv~~G~~~~~~ 432 (1119)
++++|++ |++++.|+++++.
T Consensus 222 ~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 222 MTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEEEeccccccccccccceEEEeCCHHHHH
Confidence 9999996 6789999998874
No 456
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=312.60 Aligned_cols=208 Identities=21% Similarity=0.292 Sum_probs=167.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++ |....+|+|.++|+++... ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 459999999999999999999999999999999999985 3212389999999887432 124679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++.+||+||+.+..+..+.... .+ ....++.+++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNR-------------------SE--------------ADEIVESSLKRVALWDEVKDRLK 143 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhhHHhh
Confidence 9999999999875432110000 00 0112456778888753 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 144 ~~~~~-----LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d 215 (252)
T PRK14256 144 SNAME-----LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVSD 215 (252)
T ss_pred CCcCc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhCC
Confidence 55554 999999999999999999999999999999999999999999999975 46777777765 47889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|+++..|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 216 YTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 457
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-34 Score=307.26 Aligned_cols=192 Identities=29% Similarity=0.422 Sum_probs=161.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCCCCCCCC
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (1119)
|+|+++++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999886 99999999876421 12457999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+...... .. .....++.+++.+||++..++.+++
T Consensus 92 ~~~~l~~~~~~~~------------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (214)
T cd03297 92 VRENLAFGLKRKR------------NR------------------------EDRISVDELLDLLGLDHLLNRYPAQ---- 131 (214)
T ss_pred HHHHHHHHHhhCC------------HH------------------------HHHHHHHHHHHHcCCHhHhhcCccc----
Confidence 9999987532100 00 0011245678899998877877766
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|+
T Consensus 132 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 132 -LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGR 209 (214)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999765577877777665 47788999999999999
Q ss_pred EEEEc
Q 001228 422 IVYQG 426 (1119)
Q Consensus 422 iv~~G 426 (1119)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98765
No 458
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-34 Score=317.03 Aligned_cols=195 Identities=26% Similarity=0.348 Sum_probs=156.1
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---hhhhcceEEEEccCCCCCCCCCH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ....++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 58999999999999999999999999999999999876 45899999997653 2334567999999988776 699
Q ss_pred HHHHHHHHHhhcCCCccHHHH-----HHHHHHHHHHc--CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 958 YESLLYSAWLRLSSDVDTKKR-----KMFVDEVMELV--ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+||+.+.... ...... ...+++.++.+ ++....+.. +..||+|||||++|||||+.+|++|+|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999775321 111111 11234455554 454444433 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||||+|||+.++..+.+.|+++. +|.|||++||+++ ++ ..||++++|.+ |++++.|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence 99999999999999999999986 4899999999975 34 45999999975 788887764
No 459
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1e-33 Score=313.85 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc-----CCCCcc-------cceEEEec
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE-----LNEFVP-------QRTCAYIS 251 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~-----~~~~~~-------~~~~~yv~ 251 (1119)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 35999999999999999999999999999999999999886 9999999987 544321 34699999
Q ss_pred cCCC--CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc
Q 001228 252 QHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (1119)
Q Consensus 252 Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 329 (1119)
|++. +++.+|+.||+.+.....+.. +.++ ....++++++.+|+..
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGAR-------------------HYGD--------------IRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccC-------------------cHHH--------------HHHHHHHHHHHcCCCh
Confidence 9973 577789999997632211000 0000 0113466888999974
Q ss_pred -cccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHH
Q 001228 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (1119)
Q Consensus 330 -~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 408 (1119)
..++.+++ |||||||||+||+||+.+|++|||||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.
T Consensus 143 ~~~~~~~~~-----LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~ 216 (258)
T PRK11701 143 ARIDDLPTT-----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVAR 216 (258)
T ss_pred hHHhCCCcc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHH
Confidence 56777766 9999999999999999999999999999999999999999999998765577877777665 4777
Q ss_pred hhcCeEEEEcCCeEEEEcChhHHH
Q 001228 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 409 ~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|+|++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 899999999999999999988763
No 460
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.5e-34 Score=358.92 Aligned_cols=206 Identities=25% Similarity=0.377 Sum_probs=166.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46999999999999999999999999999999999999997 9999999999876543 568999999999987 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++..- .+.++..+++...+ .+..++ .|++..||.+|+ .+
T Consensus 570 TIreNI~~g~~~-------------------------~~~e~i~~al~~a~------l~~~i~--~lp~GldT~ige-~G 615 (711)
T TIGR00958 570 SVRENIAYGLTD-------------------------TPDEEIMAAAKAAN------AHDFIM--EFPNGYDTEVGE-KG 615 (711)
T ss_pred CHHHHHhcCCCC-------------------------CCHHHHHHHHHHcC------CHHHHH--hCCCccCCcccC-CC
Confidence 999999875210 00111111111111 011222 356778999996 34
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..||||||||++||||++.+|+|++||||||+||+.+...+.+ ... ..++|+|+..|++ ++.+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIiItHrl--~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLLIAHRL--STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEEEeccH--HHHHhCCEEEEEECC
Confidence 6699999999999999999999999999999999999988888 222 2478999988886 467889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++.+|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999865
No 461
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-34 Score=313.65 Aligned_cols=206 Identities=24% Similarity=0.318 Sum_probs=165.3
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--Ce--eEEEEEECCccCC---hhhhcceEEEEccCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--IEGDIKISGYPKN---QETFARVSGYCEQNDI 950 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g~--~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~ 950 (1119)
+++.+|+||||+|.+||+++|+|+||||||||+++|+|...+ |. +.|++.++|.+.. ...+++.++|++|++.
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 345699999999999999999999999999999999997542 21 2356666666542 2345677999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 1026 (1119)
+++.+|++||+.+...... .....+..+.+.++++.+++.+ ..+.. +..||+|||||++|||||+.+|+
T Consensus 101 ~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrl~laral~~~P~ 173 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPK 173 (257)
T ss_pred cCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC-----cccCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999988643211 1112333456788999999864 22332 45799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1027 illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+...||++++|.+ |+++..|+..
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~~ 237 (257)
T PRK14246 174 VLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSSN 237 (257)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999864 699999999975 46678999999975 7998888754
No 462
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-34 Score=298.11 Aligned_cols=157 Identities=30% Similarity=0.451 Sum_probs=141.0
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCCH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
..+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++.+++..|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 359999999999999999999999999999999999865 358999999987542 2345679999999988888899
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
.||+. ||+|||||++|||||+.+|++|+|||||+||
T Consensus 91 ~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 91 RENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred HHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 98873 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
|+.++..+.+.|+++.++|.|||++||+++ .+...+|++++|++|
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999877899999999975 466689999999763
No 463
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.3e-34 Score=358.92 Aligned_cols=208 Identities=25% Similarity=0.447 Sum_probs=172.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+.
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~- 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG- 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-
Confidence 35899999999999999999999999999999999999997 9999999999877653 5789999999999975
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++.. +.+.++..+++...+ .+..++ .|++..||.+|+ .+
T Consensus 554 TI~eNi~~~~~-------------------------~~~~~~i~~a~~~~~------l~~~i~--~lp~gl~T~i~e-~G 599 (694)
T TIGR03375 554 TLRDNIALGAP-------------------------YADDEEILRAAELAG------VTEFVR--RHPDGLDMQIGE-RG 599 (694)
T ss_pred hHHHHHhCCCC-------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcccccceecC-CC
Confidence 99999987421 111112222222111 111222 467788999996 45
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..||||||||++||||++.+|++++||||||+||+.+...|.+.|+++.+ ++|+|++.|++ ++.+.||+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl--~~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT--SLLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 66999999999999999999999999999999999999999999998764 68999988887 467899999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++++|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999865
No 464
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.3e-33 Score=299.11 Aligned_cols=171 Identities=40% Similarity=0.716 Sum_probs=152.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999999 776 9999999998764334567999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
++||+.+..++ .
T Consensus 99 ~~~~i~~~~~~----------------------------------------------~---------------------- 110 (194)
T cd03213 99 VRETLMFAAKL----------------------------------------------R---------------------- 110 (194)
T ss_pred HHHHHHHHHHh----------------------------------------------c----------------------
Confidence 99999763110 0
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. ++|+|++.|++..++.+++|++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 29999999999999999999999999999999999999999999998653 78999999988767888999999999999
Q ss_pred EEEEc
Q 001228 422 IVYQG 426 (1119)
Q Consensus 422 iv~~G 426 (1119)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98765
No 465
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=311.89 Aligned_cols=207 Identities=18% Similarity=0.285 Sum_probs=163.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+ +....+|+|.++|+++... ..++.++|++|++.+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 358999999999999999999999999999999999864 1111389999999887532 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++. ||+||+.+.....+... ... ....+...++.+++. +..+
T Consensus 114 ~~~-tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 159 (268)
T PRK14248 114 FPK-SIYNNITHALKYAGERR-------------------KSV--------------LDEIVEESLTKAALWDEVKDRLH 159 (268)
T ss_pred Ccc-cHHHHHHHHHHhcCCCc-------------------HHH--------------HHHHHHHHHHHcCCCcchHHHHh
Confidence 875 99999987533211000 000 001234456677764 2345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ ||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 160 ~~~~~-----LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d 231 (268)
T PRK14248 160 SSALS-----LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALRVSD 231 (268)
T ss_pred cCccc-----CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHHhCC
Confidence 55555 999999999999999999999999999999999999999999999864 57877777775 47889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+.+++.
T Consensus 232 ~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 232 RTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
No 466
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-34 Score=312.85 Aligned_cols=206 Identities=19% Similarity=0.260 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc---CCCCCcceEEEECCccCCCC-----cccceEEEeccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL---GKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~---~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~ 255 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.. ++. ..+|+|.++|+++... ..++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 45999999999999999999999999999999999973 331 1389999999987542 12457999999988
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc----c
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC----A 331 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~----~ 331 (1119)
+++ .||.||+.+..+..+... .+ .....++++++.+||.+. .
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~--------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKD--------------------NA-------------FIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCc--------------------HH-------------HHHHHHHHHHHHcCCCcchhhhh
Confidence 887 699999987643221100 00 001234567888888643 3
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhc
Q 001228 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (1119)
Q Consensus 332 dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 411 (1119)
+..+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ++.++|
T Consensus 141 ~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~ 212 (250)
T PRK14245 141 KESAFA-----LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--DYTIVIVTHNMQ-QAARVS 212 (250)
T ss_pred hCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHhhC
Confidence 455544 999999999999999999999999999999999999999999999853 678887777654 788999
Q ss_pred CeEEEEcCCeEEEEcChhHHH
Q 001228 412 DDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 412 D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
|++++|++|+++++|+++++.
T Consensus 213 d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 213 DKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999998874
No 467
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.6e-33 Score=304.82 Aligned_cols=196 Identities=25% Similarity=0.381 Sum_probs=165.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999999886 999999999875432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+|+.||+.++....... .. . +....++.+++.+||.+..++.+.+
T Consensus 95 ~~~t~~~n~~~~~~~~~~~---------~~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~ 141 (220)
T TIGR02982 95 GFLTARQNVQMALELQPNL---------SY----------Q--------------EARERARAMLEAVGLGDHLDYYPHN 141 (220)
T ss_pred CCCCHHHHHHHHHHhccCC---------CH----------H--------------HHHHHHHHHHHHcCChhhhhcChhh
Confidence 9999999998864321100 00 0 0112356788999998888887765
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+..++|+|++.|++. +.+++|+|++|
T Consensus 142 -----lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l 214 (220)
T TIGR02982 142 -----LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM 214 (220)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence 99999999999999999999999999999999999999999999987655789999988874 56899999999
Q ss_pred cCCeE
Q 001228 418 SEGQI 422 (1119)
Q Consensus 418 ~~G~i 422 (1119)
++|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
No 468
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.2e-34 Score=349.95 Aligned_cols=201 Identities=27% Similarity=0.437 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|+.
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA- 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-
Confidence 35899999999999999999999999999999999999997 9999999999877543 5679999999998874
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCC------ccccccc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL------DICADTM 334 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~ 334 (1119)
|++||+.++.. +.+.++ +...++..|+ ++..||.
T Consensus 429 ti~~Ni~~~~~-------------------------~~~~~~---------------i~~al~~~~l~~~i~~p~GldT~ 468 (574)
T PRK11160 429 TLRDNLLLAAP-------------------------NASDEA---------------LIEVLQQVGLEKLLEDDKGLNAW 468 (574)
T ss_pred cHHHHhhcCCC-------------------------ccCHHH---------------HHHHHHHcCCHHHHcCccccCch
Confidence 99999987521 000011 1122233333 5678999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+|+. ++.||||||||++||||++.+|++++|||||++||+.+...+.+.|+++.+ ++|+|++.|+++ ....||+|
T Consensus 469 vge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tviiitHr~~--~~~~~d~i 543 (574)
T PRK11160 469 LGEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLT--GLEQFDRI 543 (574)
T ss_pred hcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecChh--HHHhCCEE
Confidence 9963 556999999999999999999999999999999999999999999998753 789999988874 45679999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|++|+++..|+++++.+
T Consensus 544 ~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEeCCeEEEeCCHHHHHh
Confidence 9999999999999998864
No 469
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.4e-34 Score=311.47 Aligned_cols=195 Identities=26% Similarity=0.415 Sum_probs=158.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+.+|+|+||+|++|++++|+||||||||||+++|+|... +..|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 459999999999999999999999999999999999865 357999999986532 234567999999998776 69
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccC------CCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+.||+.+... ... ...+.++++.+++.+..++.+. ...+.+||||||||++|||||+.+|++|+|
T Consensus 94 v~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999876421 111 1235677888888766554321 012357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||+|||+.++..+++.|++++++ +|||++||+++ ..+.+|++++|.+ |++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEeC-CeEeecC
Confidence 9999999999999999999998754 89999999975 3478999999975 7777653
No 470
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-34 Score=313.39 Aligned_cols=207 Identities=23% Similarity=0.290 Sum_probs=165.0
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 469999999999999999999999999999999999643 1 1257999999987532 2345679999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
++. |+.||+.+...... ....+...+.+.++++.+++.+........ .+..||+|||||++|||||+.+|+||+||
T Consensus 96 ~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllD 171 (250)
T PRK14266 96 FPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SALGLSGGQQQRLCIARTIAVSPEVILMD 171 (250)
T ss_pred Ccc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 875 99999987643221 112233445678889998875321111111 24579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+|||+.++..+.++|+++. +|+|||++||+++ ++...+|++++|.+ |++++.|+..
T Consensus 172 EP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~~ 230 (250)
T PRK14266 172 EPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLTD 230 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCHH
Confidence 9999999999999999999986 4899999999975 57778899999965 7999988753
No 471
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=312.27 Aligned_cols=207 Identities=21% Similarity=0.298 Sum_probs=164.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 358999999999999999999999999999999999853 4222389999999887421 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++ +||+||+.+.....+.... .. ....++.+++.+|+.. ..+
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKDK-------------------QV--------------LDEAVEKSLKGASIWDEVKDRLH 143 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCcH-------------------HH--------------HHHHHHHHHHHcCCchhHHHHHh
Confidence 87 8999999876432211000 00 0112345677777643 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
..+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|++.|++ .++.++||
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d 215 (252)
T PRK14239 144 DSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRISD 215 (252)
T ss_pred cCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhCC
Confidence 55554 999999999999999999999999999999999999999999999864 57777777665 47889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++|++++.|+.+++.
T Consensus 216 ~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 216 RTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988864
No 472
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2e-34 Score=356.74 Aligned_cols=211 Identities=24% Similarity=0.359 Sum_probs=177.3
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. ++.+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEE
Confidence 46899999987641 1349999999999999999999999999999999999876 458999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
++ ...+++.++|++|++.+++. |++||+.++. +. .++.++++++.+++.+.. |..++..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DI----SEEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CC----CHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 35678899999999999886 9999998752 11 133477888888876543 3334432
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+++.+.|++.|+++.+ ++|+|++||++ +....||++++|++
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHR 549 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 79999999997 46677999999974
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 550 -G~i~~~G~~~ 559 (592)
T PRK10790 550 -GQAVEQGTHQ 559 (592)
T ss_pred -CEEEEEcCHH
Confidence 8999999854
No 473
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.8e-34 Score=314.66 Aligned_cols=192 Identities=28% Similarity=0.402 Sum_probs=153.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~t 956 (1119)
..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 359999999999999999999999999999999999865 458999999977532 233467999999988776 69
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCC-----------CCccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-----------KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 1025 (1119)
++||+.+....+ ... .+.+.++..++ ....+.. +..||+|||||++||++|+.+|
T Consensus 93 v~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 93 IAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVGER-----GSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred HHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeeccC-----CccCCHHHHHHHHHHHHHhcCC
Confidence 999997743211 111 11222333332 2222222 4579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1026 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1026 ~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ ..||++++|.+ |++++.|+.
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999987 7999999999975 34 57999999975 789888874
No 474
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-33 Score=311.26 Aligned_cols=204 Identities=20% Similarity=0.280 Sum_probs=167.8
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
.+.+|+++||+|++||+++|+|+||||||||+++|+|..+ +..|+|.++|. +++++|.+...+.+|+.
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE----------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE----------EeEEecccCCCCCCcHH
Confidence 4579999999999999999999999999999999999866 45899999984 45677777777789999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+..... ....+...+.++++++.+++.+..+.. +..||+|||||++||+||+.+|+||||||||+|||
T Consensus 104 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD 175 (264)
T PRK13546 104 ENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD 175 (264)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 9998754332 122333445567888888988776665 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChHHHHHHhh
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~~l~~~f~ 1104 (1119)
+.++..+++.|.++.+.|+|||++||+++ .+.+.+|++++|. +|++++.|+..+......+||.
T Consensus 176 ~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~~~~~~~~~~~~ 239 (264)
T PRK13546 176 QTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGKLKDYGELDDVLPKYEAFLN 239 (264)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCEEEEeCCHHHHHHHhHHHHH
Confidence 99999999999999777999999999975 4667899999997 4789988886543334444443
No 475
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.1e-33 Score=312.07 Aligned_cols=207 Identities=26% Similarity=0.298 Sum_probs=160.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhh-cceEEEEccCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF-ARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~-~~~~gy~~q~~~~~~~~ 955 (1119)
+.+|+|+||+|++|++++|+|+||||||||+++|+|.....+.+|+|.++|.++.. ... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 46999999999999999999999999999999999974211458999999987532 122 34699999999888877
Q ss_pred CHHHHHHHHH-HhhcC---CCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 956 TVYESLLYSA-WLRLS---SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 956 tv~e~l~~~~-~l~~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
++.+++.+.. .++.. .........+.++++++.+++. +..++.+ ...||+|||||++|||||+.+|+||+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G~~qrv~laral~~~p~illL 169 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGGEKKRNDILQMAVLEPELCIL 169 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 7766654321 11100 0011122345677889998884 3444432 126999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-hceEeEEecCcEEEEecCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||||+|||+.++..+.+.|+++++.|+|||++||+++ ..... +|++++|. +|++++.|+.
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g~i~~~g~~ 230 (248)
T PRK09580 170 DESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QGRIVKSGDF 230 (248)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CCeEEEeCCH
Confidence 9999999999999999999999877899999999975 34444 79999996 5789988874
No 476
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-34 Score=312.43 Aligned_cols=195 Identities=25% Similarity=0.377 Sum_probs=153.7
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCCH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++. |+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv 93 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TI 93 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HH
Confidence 59999999999999999999999999999999999875 458999999976532 3456679999999887775 99
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccccc-C-----CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV-G-----LPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-----~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+||+.+... .... ..+.+.++.+++.+..+... + ...+..||+|||||++|||+|+.+|++||||
T Consensus 94 ~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllD 164 (229)
T cd03254 94 MENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD 164 (229)
T ss_pred HHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999976421 1111 12333444444433222210 0 0114579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
|||+|||+.+++.+++.|+++. +|+|||++||+++ ++ ..||++++|.+ |++++.|+
T Consensus 165 EP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g~~~~~~~ 220 (229)
T cd03254 165 EATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-GKIIEEGT 220 (229)
T ss_pred CccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-CeEEEeCC
Confidence 9999999999999999999986 5899999999975 34 56999999975 78888776
No 477
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.5e-34 Score=304.78 Aligned_cols=183 Identities=24% Similarity=0.305 Sum_probs=153.5
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 4569999999999999999999999999999999999865 458999999987532 234567999999988888899
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
+.||+.+....+. . + .+.+.++++.+++.+..++. +..||+|||||++||||++.+|++|+|||||+|
T Consensus 90 v~~~l~~~~~~~~---~--~--~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 90 ALENLHFWAAIHG---G--A--QRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred HHHHHHHHHHHcC---C--c--HHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987643321 1 1 23467899999998776665 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEe
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
||+.++..+++.|+++.++|.|||++||++. + ..+++++
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~--~~~~~~~ 196 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL-G--LVEAREL 196 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-c--ccceEEe
Confidence 9999999999999998777999999999864 2 2345554
No 478
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5.6e-34 Score=359.44 Aligned_cols=208 Identities=27% Similarity=0.393 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|++||.++.+... ++.++||+|++.+|+.
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 562 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG- 562 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-
Confidence 35899999999999999999999999999999999999997 9999999998876543 5789999999999975
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+|||.++.+. +.+.++..+++...+ .+..++ .|+...||.||+ .+
T Consensus 563 TI~eNi~l~~~~------------------------~~~~~~i~~a~~~a~------l~~~i~--~lp~gldt~i~e-~G 609 (708)
T TIGR01193 563 SILENLLLGAKE------------------------NVSQDEIWAACEIAE------IKDDIE--NMPLGYQTELSE-EG 609 (708)
T ss_pred HHHHHHhccCCC------------------------CCCHHHHHHHHHHhC------CHHHHH--hcccccCcEecC-CC
Confidence 999999875210 011111122222111 111222 467788999986 45
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..||||||||++||||++.+|++|+||||||+||+.+...+.+.|+++ .++|+|++.|.++ +.+.||+|++|++|
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i~~l~~G 684 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKIIVLDHG 684 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEEEEEECC
Confidence 679999999999999999999999999999999999999999999874 3689988888874 66889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++..|+++++.+
T Consensus 685 ~i~~~G~~~~L~~ 697 (708)
T TIGR01193 685 KIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 479
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=311.61 Aligned_cols=208 Identities=18% Similarity=0.294 Sum_probs=165.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|++|++|++++|+||||||||||+++|+|..+ +....+|+|.++|.++... ..++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999976 2112489999999876432 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc----cc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC----AD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~----~d 332 (1119)
++. ||+||+.+.....+..... .+ ....++.+++.+||.+. .+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK------------------KK--------------LDEIVEKSLTSVGLWEELGDRLK 144 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH------------------HH--------------HHHHHHHHHHHcCCCchhhhHhh
Confidence 885 9999998753322110000 00 01124567888898652 34
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
..++ .|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ++.+++|
T Consensus 145 ~~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d 216 (251)
T PRK14244 145 DSAF-----ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK--NFTIIVVTHSMK-QAKKVSD 216 (251)
T ss_pred cChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHhhcC
Confidence 4444 4999999999999999999999999999999999999999999999853 688888877764 7788999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++|++++.|+.+++.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 217 RVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999987763
No 480
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=314.43 Aligned_cols=213 Identities=27% Similarity=0.356 Sum_probs=171.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-----CCcceEEEECCccCCCCc---ccceEEEeccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----LRASGKITYCGHELNEFV---PQRTCAYISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~-----~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~ 255 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++.... .++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999999874 113799999999875432 2346899999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
.++.+||+||+.+....... .. +... . +....++.+++.+||++..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~~-------------~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--RA-------------GALT-H--------------RDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccc--cc-------------ccCC-H--------------HHHHHHHHHHHHcCcHhhhcCCc
Confidence 66679999999875311000 00 0000 0 00123466888999988777777
Q ss_pred cCccCCCCChHHHHHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~---------~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 406 (1119)
++ |||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .+
T Consensus 144 ~~-----LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~ 217 (272)
T PRK13547 144 TT-----LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NL 217 (272)
T ss_pred cc-----CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HH
Confidence 76 9999999999999999 599999999999999999999999999998765577888887775 47
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhHHH
Q 001228 407 TYDLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 407 ~~~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+.++||++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 88899999999999999999987763
No 481
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.2e-34 Score=313.30 Aligned_cols=209 Identities=25% Similarity=0.346 Sum_probs=168.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++ +..+|+++||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.
T Consensus 5 l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~--- 66 (251)
T PRK09544 5 VSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK--- 66 (251)
T ss_pred EEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc---
Confidence 56777765432 3469999999999999999999999999999999999865 45899999862
Q ss_pred hhhhcceEEEEccCCCCCCC--CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 935 QETFARVSGYCEQNDIHSPY--VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 935 ~~~~~~~~gy~~q~~~~~~~--~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
..++|++|++.+++. .|+.+++.+. ... ..+.+.++++.+++.+..++. +..||+|||
T Consensus 67 -----~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~----~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 126 (251)
T PRK09544 67 -----LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGT----KKEDILPALKRVQAGHLIDAP-----MQKLSGGET 126 (251)
T ss_pred -----cCEEEeccccccccccChhHHHHHhcc------ccc----cHHHHHHHHHHcCChHHHhCC-----hhhCCHHHH
Confidence 359999999877665 4777766431 111 123467899999998777765 357999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|. + ++++.|+
T Consensus 127 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g~ 203 (251)
T PRK09544 127 QRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSGT 203 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeCC
Confidence 9999999999999999999999999999999999999998765 899999999975 5667899999995 4 5888887
Q ss_pred CCC--ChHHHHHHhh
Q 001228 1092 LGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1092 ~~~--~~~~l~~~f~ 1104 (1119)
..+ ....+.++|.
T Consensus 204 ~~~~~~~~~~~~~~~ 218 (251)
T PRK09544 204 PEVVSLHPEFISMFG 218 (251)
T ss_pred HHHHhCCHHHHHHhC
Confidence 542 2234666664
No 482
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=9.4e-34 Score=315.44 Aligned_cols=207 Identities=25% Similarity=0.322 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCC--C
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 255 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 56999999999999999999999999999999999999886 999999998775432 245799999997 4
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 334 (1119)
+++..|+.|++.+....... ... ......++.+++.+||. ...++.
T Consensus 102 ~~~~~t~~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~ 148 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLLS---------LDK------------------------AERLARASEMLRAVDLDDSVLDKR 148 (268)
T ss_pred cCCCCCHHHHHHHHHHhhcc---------CCH------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 66779999999764221000 000 00112356788899996 466777
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+++ |||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++
T Consensus 149 ~~~-----LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i 222 (268)
T PRK10419 149 PPQ-----LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRV 222 (268)
T ss_pred Ccc-----CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEE
Confidence 765 9999999999999999999999999999999999999999999998765577888887765 4778899999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|++++.|+.+++.
T Consensus 223 ~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 223 MVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEECCEEeeeCChhhcc
Confidence 999999999999988764
No 483
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=310.17 Aligned_cols=207 Identities=22% Similarity=0.368 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 35899999999999999999999999999999999998741 12489999999876531 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++ +||+||+.+.....+.... .. ....+++.++.+|+.. ..+
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 141 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK-------------------HK--------------LDRIVEESLKKAALWDEVKSELN 141 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH-------------------HH--------------HHHHHHHHHHHcCCCchhHHHHh
Confidence 87 8999999886432211000 00 0112345677777753 345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
..+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|++++.|++. ++.+++|
T Consensus 142 ~~~~~-----LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~-~~~~~~d 213 (250)
T PRK14262 142 KPGTR-----LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIG-QAIRIAD 213 (250)
T ss_pred CChhh-----cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHH-HHHHhCC
Confidence 55544 999999999999999999999999999999999999999999999864 578777777654 6889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|+++.+|+.+++.
T Consensus 214 ~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 214 YIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEEEECCEEEEecCHHHHH
Confidence 99999999999999988764
No 484
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=309.95 Aligned_cols=206 Identities=20% Similarity=0.336 Sum_probs=164.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
++|+|+|++|++||+++|+|||||||||||++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 589999999999999999999999999999999998753 212489999999987531 1245799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----ccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 333 (1119)
+ +||+||+.|.....+.... .+ ....++.+++.+++. +..++
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~l~~~~~~ 142 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK-------------------KK--------------LDEIVEKSLKGAALWDEVKDRLKK 142 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhHHHHhc
Confidence 7 8999999886432211000 00 011234556677664 23455
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|+
T Consensus 143 ~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~ 214 (250)
T PRK14240 143 SALG-----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHNM-QQASRISDK 214 (250)
T ss_pred CCCC-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeCH-HHHHhhCCE
Confidence 5555 999999999999999999999999999999999999999999999853 67888877765 478899999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|+++..|+.+++.
T Consensus 215 v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 215 TAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
No 485
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-34 Score=298.65 Aligned_cols=159 Identities=31% Similarity=0.430 Sum_probs=141.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~~~~ 954 (1119)
+.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++..++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 469999999999999999999999999999999999865 458999999987532 2455789999999988888
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
.|++|++.+. ||+|||||++|||||+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999887532 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
+|||+.++..+++.|++++++ |+|+|++||+++ ++...+|++++|++|
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999877 899999999975 455679999999763
No 486
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.9e-33 Score=343.55 Aligned_cols=214 Identities=24% Similarity=0.362 Sum_probs=175.8
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. .+..+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 329 ~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~ 395 (571)
T TIGR02203 329 GDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHD 395 (571)
T ss_pred CeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEe
Confidence 46899999987642 12358999999999999999999999999999999999876 458999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccc-------cccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND-------SMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~ 1002 (1119)
++ ...+++.++|++|++.+++. |++||+.++. +.+. .++.++++++.+++.+..+ ..++..
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~----~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFND-TIANNIAYGR----TEQA----DRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred HHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCC----CCCC----CHHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 54 35567889999999988765 9999998652 1112 2344778888888765433 334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++||||++++|+||+||||||+||+.+++.|++.|+++. +++|+|++||++ .....||++++|++
T Consensus 467 -g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~ 542 (571)
T TIGR02203 467 -GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDD 542 (571)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999885 479999999997 46788999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|+++..|+..
T Consensus 543 -g~i~~~g~~~ 552 (571)
T TIGR02203 543 -GRIVERGTHN 552 (571)
T ss_pred -CEEEeeCCHH
Confidence 8999888743
No 487
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.2e-33 Score=306.11 Aligned_cols=211 Identities=26% Similarity=0.353 Sum_probs=168.3
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCC--CCCCHHHHHHHHH
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS--PYVTVYESLLYSA 965 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~--~~~tv~e~l~~~~ 965 (1119)
|+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.++ ..+|+.|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 5689999999999999999999999999865 45899999998753 2356799999998664 3479999998753
Q ss_pred HhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q 001228 966 WLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044 (1119)
Q Consensus 966 ~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~ 1044 (1119)
..... ...........+.++++.+++.+..+.. +.+||+|||||++|||+|+.+|++|||||||+|||+.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 0011122344578899999998777665 34799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhhhhcCCCc
Q 001228 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFEVSIPFFP 1111 (1119)
Q Consensus 1045 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~~~i~g~~ 1111 (1119)
+.+.|+++.++|.|||++||+++ ++...||+++++ + |++++.|+..+ ..+.+.+.|. .-||-|
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~ 216 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQLQDPAPWMTTFG-VSDSSP 216 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHHhcChHHHHHHhC-CCCcch
Confidence 99999999877999999999975 577789999998 5 89999887543 3345666676 445555
No 488
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-34 Score=319.67 Aligned_cols=207 Identities=18% Similarity=0.316 Sum_probs=163.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
..+|+|+|++|++|++++|+|||||||||||++|+|..+ |....+|+|.++|.++... ..++.++|++|++.+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 359999999999999999999999999999999999854 2001389999999876432 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++. ||+||+.|.....+... ... ....+..+++.+||. +..+
T Consensus 132 ~~~-tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~l~~~~~ 177 (286)
T PRK14275 132 FPK-SIFDNIAYGPRLHGIND-------------------KKQ--------------LEEIVEKSLRKAALWDEVSDRLD 177 (286)
T ss_pred Ccc-CHHHHHHhHHHhcCCCc-------------------HHH--------------HHHHHHHHHHHhCCccchhhHhh
Confidence 875 99999988643221100 000 011234566677763 3445
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||+||+.+|+++||||||+|||+.++..+.+.|++++. +.|+|++.|++ .++.+++|
T Consensus 178 ~~~~~-----LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~-~~~~~~~d 249 (286)
T PRK14275 178 KNALG-----LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNM-QQASRVSD 249 (286)
T ss_pred CChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 55555 999999999999999999999999999999999999999999999864 46777777665 47788999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+.+++.
T Consensus 250 ~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 250 YTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
No 489
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1e-33 Score=307.27 Aligned_cols=190 Identities=24% Similarity=0.293 Sum_probs=155.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEEC--Cc--cCC---hhh----hcceEEEEccC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS--GY--PKN---QET----FARVSGYCEQN 948 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~--g~--~~~---~~~----~~~~~gy~~q~ 948 (1119)
..+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++ |. ++. ... .++.++|++|+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 469999999999999999999999999999999999865 357999998 42 321 111 13469999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
+.+++.+|+.|++.+..... ........+.+.++++.+++.+ ..+.. +.+||+|||||++|||||+.+|++
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred cccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999998754322 1222334456788999999975 33443 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ .+...||+++.+
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 9999999999999999999999999877999999999964 345678998876
No 490
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.6e-33 Score=310.03 Aligned_cols=201 Identities=27% Similarity=0.413 Sum_probs=167.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCCCH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 262 (1119)
+|+|||+++++|++++|+||||||||||+++|+|.++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999874 3 8999999998754332 3468999999888888999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.... .. . ..+ ....++.+++.+||++..++.+++
T Consensus 87 ~~nl~~~~~~-~~-~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (248)
T PRK03695 87 FQYLTLHQPD-KT-R-------------------TEA--------------VASALNEVAEALGLDDKLGRSVNQ----- 126 (248)
T ss_pred HHHHHhcCcc-CC-C-------------------cHH--------------HHHHHHHHHHHcCCHhHhcCCccc-----
Confidence 9999875221 00 0 000 012346788999998888888776
Q ss_pred CChHHHHHHHHHHHHhc-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 343 ISGGQKKRVTTGEMLVG-------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~-------~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
|||||||||+||+||+. +|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999999875 367877777665 47889999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001228 416 LLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999987663
No 491
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.1e-33 Score=309.85 Aligned_cols=206 Identities=23% Similarity=0.385 Sum_probs=162.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 45899999999999999999999999999999999999886 999999998765432 2457999999988775 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc--CCcccccccccCc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 338 (1119)
||+||+.+... .. . .+... +... .......++.+ |++...+..+++
T Consensus 91 tv~~nl~~~~~--~~-~-~~~~~---------------------~~~~------~~~~~~~l~~l~~~~~~~~~~~~~~- 138 (237)
T cd03252 91 SIRDNIALADP--GM-S-MERVI---------------------EAAK------LAGAHDFISELPEGYDTIVGEQGAG- 138 (237)
T ss_pred hHHHHhhccCC--CC-C-HHHHH---------------------HHHH------HcCcHHHHHhCcccccchhhcCCCc-
Confidence 99999987432 10 0 00000 0000 00112344444 555545555555
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++ ..||++++|+
T Consensus 139 ----LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~-~~~d~v~~l~ 210 (237)
T cd03252 139 ----LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLS-TV-KNADRIIVME 210 (237)
T ss_pred ----CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999863 788888888775 45 5699999999
Q ss_pred CCeEEEEcChhHHHH
Q 001228 419 EGQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1119)
+|++++.|+.+++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (237)
T cd03252 211 KGRIVEQGSHDELLA 225 (237)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999887653
No 492
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=309.56 Aligned_cols=208 Identities=23% Similarity=0.317 Sum_probs=165.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999987631 1379999999887531 124579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCC----ccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL----DICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL----~~~~d 332 (1119)
++.+||.||+.++....+... . ... ....+..++.+++ .+..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~-~------------------~~~--------------~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRD-R------------------DHL--------------MEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCC-H------------------HHH--------------HHHHHHHHHHcCcchhhhhhhc
Confidence 999999999987543211000 0 000 0112334445544 23456
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d 215 (252)
T PRK14272 144 TPATG-----LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNM-HQAARVSD 215 (252)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 66665 999999999999999999999999999999999999999999999864 57777777765 47888999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988774
No 493
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=313.08 Aligned_cols=217 Identities=22% Similarity=0.281 Sum_probs=172.2
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--C-eeEEEEEEC
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKIS 929 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~ 929 (1119)
..+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3477888776442 24699999999999999999999999999999999997642 1 258999999
Q ss_pred CccCC-------hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccc
Q 001228 930 GYPKN-------QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSM 998 (1119)
Q Consensus 930 g~~~~-------~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~ 998 (1119)
|.+.. ...+++.++|++|++.+++. |++||+.+....... . .....++.+.++++.+++.+ ..++.
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV-K-RRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC-C-hHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 87542 12345679999999988876 999999876432211 1 11222345777888887742 22333
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEe
Q 001228 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 999 ~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
+..||+|||||++|||+|+.+|++|||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||+++
T Consensus 159 -----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~ 231 (265)
T PRK14252 159 -----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTA 231 (265)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999875 699999999975 5667899999
Q ss_pred EEecCcEEEEecCCC
Q 001228 1079 LLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1079 ~l~~gG~v~~~g~~~ 1093 (1119)
+|.+ |++++.|+..
T Consensus 232 ~l~~-G~i~~~g~~~ 245 (265)
T PRK14252 232 YMYM-GELIEFGATD 245 (265)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9974 8898888753
No 494
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-33 Score=285.92 Aligned_cols=226 Identities=26% Similarity=0.325 Sum_probs=189.3
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+..+|+.+.++ +++.+|++||++|++||+.+||||||||||||.++|+|.+.+.+.+|+|.++|.++.
T Consensus 4 L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~ 71 (251)
T COG0396 4 LEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71 (251)
T ss_pred eEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc
Confidence 56677766553 114799999999999999999999999999999999999887788999999999864
Q ss_pred h----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCH
Q 001228 935 Q----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ~----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~ 1009 (1119)
. +..+..+...+|.|.-.|..++.+.|......+........+....+.+.++.+++.+ +.++.+.. ++||
T Consensus 72 ~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSG 147 (251)
T COG0396 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSG 147 (251)
T ss_pred cCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCc
Confidence 3 3345568899999999999999999987665433221113445667889999999987 66776653 7999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhh--ceEeEEecCcEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELLLLKRGGRVI 1087 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~--d~~l~l~~gG~v~ 1087 (1119)
|||||..|+..++.+|++.+||||-||||..+-+.|-+.++.+++.|+++++|||.. .+.... |++.+|.+ |+|+
T Consensus 148 GEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrIv 224 (251)
T COG0396 148 GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRIV 224 (251)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999999999999984 566666 99999986 8999
Q ss_pred EecCCCCChHHHHHHhh
Q 001228 1088 YAGPLGHESHKLIEYFE 1104 (1119)
Q Consensus 1088 ~~g~~~~~~~~l~~~f~ 1104 (1119)
..|.. +|.++++
T Consensus 225 ~sG~~-----el~~~le 236 (251)
T COG0396 225 KSGDP-----ELAEELE 236 (251)
T ss_pred ecCCH-----HHHHHHH
Confidence 99974 5666666
No 495
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5e-34 Score=293.32 Aligned_cols=209 Identities=22% Similarity=0.326 Sum_probs=185.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
.++.+++|+||.++||+|++++|||||||||.+++|.|.+.|+ +|+|+++|.+++... +..|||.|.+--+++.+|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMT 88 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCccCc
Confidence 5678999999999999999999999999999999999999997 999999999887543 357999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|.|.|.|.|+++|.... +.....++.|+.+++......+|-+
T Consensus 89 v~dql~yla~LkGm~~~----------------------------------e~~~~~~~wLer~~i~~~~~~kIk~---- 130 (300)
T COG4152 89 VEDQLKYLAELKGMPKA----------------------------------EIQKKLQAWLERLEIVGKKTKKIKE---- 130 (300)
T ss_pred HHHHHHHHHHhcCCcHH----------------------------------HHHHHHHHHHHhccccccccchHHH----
Confidence 99999999999875321 1123457789999998888888766
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
||-|.+|++.+-.++++.|++++||||+|||||.++..+-+.+.++.. .|.|+|.+.|. ...+.++||++++|++|+
T Consensus 131 -LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~-Me~vEeLCD~llmL~kG~ 207 (300)
T COG4152 131 -LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHR-MEHVEELCDRLLMLKKGQ 207 (300)
T ss_pred -hhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecch-HHHHHHHhhhhheecCCc
Confidence 999999999999999999999999999999999999999999999876 58888888765 568999999999999999
Q ss_pred EEEEcChhHHHHHH
Q 001228 422 IVYQGPRDNVLEFF 435 (1119)
Q Consensus 422 iv~~G~~~~~~~~f 435 (1119)
.|.+|+.+++..-|
T Consensus 208 ~V~~G~v~~ir~~~ 221 (300)
T COG4152 208 TVLYGTVEDIRRSF 221 (300)
T ss_pred eEEeccHHHHHHhc
Confidence 99999999998744
No 496
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-34 Score=323.65 Aligned_cols=202 Identities=26% Similarity=0.402 Sum_probs=170.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1119)
+.++|+|+|+++++||.+||+|++|||||||++.|+|-++|+ +|+|+.||.++..... ++.+++++|...+|..
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~ 426 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG 426 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH
Confidence 346999999999999999999999999999999999999998 9999999998876554 4689999999888864
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCC-------ccccc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL-------DICAD 332 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~d 332 (1119)
|+|+||.++.. +...++. -.+++..|| ++..|
T Consensus 427 -Tlr~NL~lA~~-------------------------~AsDEel---------------~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 427 -TLRDNLRLANP-------------------------DASDEEL---------------WAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred -HHHHHHhhcCC-------------------------CCCHHHH---------------HHHHHHcCHHHHHHhChhhhh
Confidence 99999987532 1111111 123333333 44678
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
|.+|+ .+++||||||||++|||+|+.|+++++|||||.|||+.|..++++.+..-++ |+|+++++|+-. -.+.||
T Consensus 466 t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~--~le~~d 540 (573)
T COG4987 466 TWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR--GLERMD 540 (573)
T ss_pred chhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc--cHhhcC
Confidence 89985 6678999999999999999999999999999999999999999999987654 899999988764 357899
Q ss_pred eEEEEcCCeEEEEcChhHHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~~ 433 (1119)
+|++|++|+++++|.+.++..
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999874
No 497
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.5e-34 Score=302.70 Aligned_cols=183 Identities=25% Similarity=0.325 Sum_probs=154.7
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+..+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++..|
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 90 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLT 90 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCC
Confidence 3469999999999999999999999999999999999876 458999999987642 345678999999988888999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|+||+.+.... . . ....+.++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||+|
T Consensus 91 v~~~~~~~~~~--~--~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 91 LRENCLYDIHF--S--P----GAVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred HHHHHHHHHhc--C--c----chHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 99999876421 1 1 123578899999997766655 347999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEe
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
||+.+++.+.+.|+++.++|+|||++||+++ ....+|...
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999998777999999999964 445566543
No 498
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-33 Score=309.97 Aligned_cols=206 Identities=21% Similarity=0.298 Sum_probs=164.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
++|+|+|+.|++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 5899999999999999999999999999999999998731 12489999999987531 1246799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----cccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 333 (1119)
+. ||+||+.+.....+... + .. ....++++++.+||.+ ..+.
T Consensus 119 ~~-tv~enl~~~~~~~~~~~--~-----------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 164 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINN--R-----------------RV--------------LDEAVERSLRGAALWDEVKDRLHE 164 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCc--H-----------------HH--------------HHHHHHHHHHHcCCChhHHHHhhC
Confidence 86 99999987643321100 0 00 0112345677777753 2344
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.++ .|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||+
T Consensus 165 ~~~-----~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~~~~~~d~ 236 (272)
T PRK14236 165 NAF-----GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNM-QQAARVSDY 236 (272)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCH-HHHHhhCCE
Confidence 444 4999999999999999999999999999999999999999999999864 57877777665 478889999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|+++..|+.+++.
T Consensus 237 i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 237 TAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEEEECCEEEecCCHHHHh
Confidence 9999999999999988763
No 499
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.3e-33 Score=343.86 Aligned_cols=204 Identities=25% Similarity=0.299 Sum_probs=166.5
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEEC-----------------------CccC--
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS-----------------------GYPK-- 933 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~-----------------------g~~~-- 933 (1119)
++.+|+|+||+|.+||++||+||||||||||+++|+|.....+.+|+|.++ |.++
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 356999999999999999999999999999999999974111357999987 2111
Q ss_pred --------Ch---hhhcceEEEEccC-CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCC
Q 001228 934 --------NQ---ETFARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001 (1119)
Q Consensus 934 --------~~---~~~~~~~gy~~q~-~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 1001 (1119)
.. ...++.++|++|+ +.+++.+||+|++.+...... ....+.++.+.++++.++|.+..++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~--- 165 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEAVGRAVDLIEMVQLSHRITHI--- 165 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcC---
Confidence 00 1234569999997 577888999999988653321 22334456788999999998777765
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
+.+||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++||+++ .+...||++++|
T Consensus 166 --~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l 242 (520)
T TIGR03269 166 --ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWL 242 (520)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999965 4899999999975 466789999999
Q ss_pred ecCcEEEEecCC
Q 001228 1081 KRGGRVIYAGPL 1092 (1119)
Q Consensus 1081 ~~gG~v~~~g~~ 1092 (1119)
.+ |++++.|+.
T Consensus 243 ~~-G~i~~~g~~ 253 (520)
T TIGR03269 243 EN-GEIKEEGTP 253 (520)
T ss_pred eC-CEEeeecCH
Confidence 75 788887764
No 500
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-33 Score=274.62 Aligned_cols=201 Identities=25% Similarity=0.367 Sum_probs=174.9
Q ss_pred CcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------ccceEEEecc
Q 001228 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQ 252 (1119)
Q Consensus 180 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q 252 (1119)
.....+||++|++.|++||-++|+|||||||||||-+|+|+-.|+ +|+|.+.|+++.... ..+.+|+|+|
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 345688999999999999999999999999999999999999887 999999999986543 1367999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc
Q 001228 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1119)
Q Consensus 253 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 332 (1119)
...++|+||-.||+..-..+++.+.+ + ........|+.+||.+-.+
T Consensus 96 SF~Lip~ltAlENV~lPleL~ge~~~----------------------~------------~~~~A~~lL~~vGLg~Rl~ 141 (228)
T COG4181 96 SFHLIPNLTALENVALPLELRGESSA----------------------D------------SRAGAKALLEAVGLGKRLT 141 (228)
T ss_pred eeeccccchhhhhccchhhhcCCccc----------------------c------------HHHHHHHHHHHhCcccccc
Confidence 99999999999999887666553211 0 0112356789999999888
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
-+.+. |||||+|||+||||+...|+|||-||||-.||..|..+|.+.|-.+.++.|.|.|+.+|.| ....-||
T Consensus 142 HyP~q-----LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~ 214 (228)
T COG4181 142 HYPAQ-----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCD 214 (228)
T ss_pred cCccc-----cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhh
Confidence 88877 9999999999999999999999999999999999999999999999988899999988876 4678899
Q ss_pred eEEEEcCCeEEE
Q 001228 413 DIILLSEGQIVY 424 (1119)
Q Consensus 413 ~i~lL~~G~iv~ 424 (1119)
|++-|..|+++.
T Consensus 215 R~~r~~~G~l~~ 226 (228)
T COG4181 215 RQLRLRSGRLVE 226 (228)
T ss_pred heeeeecceecc
Confidence 999999999874
Done!