Query 001228
Match_columns 1119
No_of_seqs 720 out of 4772
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 17:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.8E-75 6.1E-80 774.0 48.2 216 853-1093 1075-1300(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 4.3E-68 1.5E-72 701.9 59.1 216 853-1093 1029-1254(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 1.3E-58 4.3E-63 565.3 35.6 188 882-1094 371-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 3.3E-58 1.1E-62 556.7 33.9 188 882-1094 301-490 (538)
5 3ozx_A RNAse L inhibitor; ATP 100.0 7.7E-57 2.6E-61 542.9 33.2 199 882-1103 283-483 (538)
6 2iw3_A Elongation factor 3A; a 100.0 3.1E-55 1E-59 550.5 40.4 184 184-432 448-634 (986)
7 3ux8_A Excinuclease ABC, A sub 100.0 1.4E-55 4.8E-60 550.7 37.1 215 183-432 30-297 (670)
8 3j16_B RLI1P; ribosome recycli 100.0 2.8E-55 9.5E-60 534.6 30.1 189 881-1094 361-556 (608)
9 3pih_A Uvrabc system protein A 100.0 8.2E-42 2.8E-46 429.5 33.5 196 882-1093 599-898 (916)
10 3tui_C Methionine import ATP-b 100.0 4.1E-42 1.4E-46 391.2 26.5 219 854-1093 24-249 (366)
11 3tif_A Uncharacterized ABC tra 100.0 8.4E-42 2.9E-46 370.8 26.3 220 855-1093 2-230 (235)
12 2r6f_A Excinuclease ABC subuni 100.0 3.2E-41 1.1E-45 419.7 33.4 196 882-1093 639-938 (972)
13 3gfo_A Cobalt import ATP-bindi 100.0 1.1E-41 3.7E-46 377.2 23.8 217 854-1094 7-230 (275)
14 3tui_C Methionine import ATP-b 100.0 3.7E-41 1.3E-45 383.4 28.3 207 183-432 40-252 (366)
15 2olj_A Amino acid ABC transpor 100.0 2.3E-41 7.8E-46 372.4 25.3 213 855-1092 25-243 (263)
16 2pcj_A ABC transporter, lipopr 100.0 2.5E-41 8.7E-46 364.5 24.7 211 855-1091 5-222 (224)
17 3rlf_A Maltose/maltodextrin im 100.0 1.9E-41 6.3E-46 388.3 24.9 205 877-1093 13-219 (381)
18 1b0u_A Histidine permease; ABC 100.0 2.6E-41 9E-46 372.8 24.2 214 855-1093 7-238 (262)
19 3fvq_A Fe(3+) IONS import ATP- 100.0 1.3E-41 4.3E-46 387.3 21.9 205 877-1093 14-224 (359)
20 1vpl_A ABC transporter, ATP-bi 100.0 4.7E-41 1.6E-45 368.7 23.9 215 854-1093 15-231 (256)
21 3fvq_A Fe(3+) IONS import ATP- 100.0 8.5E-41 2.9E-45 380.5 25.3 207 184-433 17-228 (359)
22 2vf7_A UVRA2, excinuclease ABC 100.0 1.3E-40 4.3E-45 415.5 28.7 106 980-1092 708-822 (842)
23 1g6h_A High-affinity branched- 100.0 3.6E-41 1.2E-45 371.0 20.7 217 855-1093 8-238 (257)
24 3rlf_A Maltose/maltodextrin im 100.0 1.3E-40 4.4E-45 381.4 25.8 207 184-433 16-223 (381)
25 1z47_A CYSA, putative ABC-tran 100.0 9.9E-41 3.4E-45 380.3 24.5 216 854-1093 14-231 (355)
26 3tif_A Uncharacterized ABC tra 100.0 2.1E-40 7.1E-45 359.9 25.5 207 184-431 18-232 (235)
27 4g1u_C Hemin import ATP-bindin 100.0 4.2E-41 1.4E-45 371.5 20.3 224 854-1104 11-246 (266)
28 2it1_A 362AA long hypothetical 100.0 1.9E-40 6.4E-45 379.4 24.8 205 877-1093 13-219 (362)
29 3gfo_A Cobalt import ATP-bindi 100.0 1.6E-40 5.6E-45 367.7 23.4 207 184-433 21-233 (275)
30 1ji0_A ABC transporter; ATP bi 100.0 1.2E-40 4.2E-45 363.0 21.7 213 855-1093 7-224 (240)
31 2yyz_A Sugar ABC transporter, 100.0 1.5E-40 5.2E-45 379.8 22.8 204 878-1093 14-219 (359)
32 1z47_A CYSA, putative ABC-tran 100.0 2.7E-40 9.3E-45 376.7 24.5 206 184-432 28-234 (355)
33 4g1u_C Hemin import ATP-bindin 100.0 7.4E-40 2.5E-44 361.5 27.0 204 184-432 24-236 (266)
34 1g29_1 MALK, maltose transport 100.0 2.7E-40 9.2E-45 380.3 24.3 204 878-1093 14-225 (372)
35 2ygr_A Uvrabc system protein A 100.0 2.3E-39 7.8E-44 404.8 33.7 196 882-1093 657-956 (993)
36 2yyz_A Sugar ABC transporter, 100.0 6.8E-40 2.3E-44 374.4 26.5 207 184-433 16-223 (359)
37 2it1_A 362AA long hypothetical 100.0 8.1E-40 2.8E-44 374.2 25.8 206 184-432 16-222 (362)
38 1oxx_K GLCV, glucose, ABC tran 100.0 1.6E-40 5.4E-45 380.0 19.9 200 882-1093 20-226 (353)
39 1v43_A Sugar-binding transport 100.0 3E-40 1E-44 379.1 21.9 214 855-1093 12-227 (372)
40 2pcj_A ABC transporter, lipopr 100.0 8.3E-40 2.8E-44 352.7 24.0 200 184-428 17-223 (224)
41 3d31_A Sulfate/molybdate ABC t 100.0 3.9E-40 1.3E-44 375.2 22.5 201 186-432 15-216 (348)
42 2olj_A Amino acid ABC transpor 100.0 1.4E-39 4.8E-44 358.1 26.0 206 184-433 37-248 (263)
43 1b0u_A Histidine permease; ABC 100.0 9.1E-40 3.1E-44 360.5 23.4 205 184-432 19-241 (262)
44 2ihy_A ABC transporter, ATP-bi 100.0 2.9E-40 1E-44 367.0 19.1 234 849-1104 16-261 (279)
45 1g29_1 MALK, maltose transport 100.0 1.6E-39 5.6E-44 373.8 25.9 206 184-432 16-228 (372)
46 3d31_A Sulfate/molybdate ABC t 100.0 5.3E-40 1.8E-44 374.2 21.6 201 877-1093 11-213 (348)
47 1v43_A Sugar-binding transport 100.0 1.3E-39 4.5E-44 373.8 24.3 206 184-432 24-230 (372)
48 1vpl_A ABC transporter, ATP-bi 100.0 2.3E-39 7.8E-44 355.4 24.2 206 184-433 28-235 (256)
49 2d2e_A SUFC protein; ABC-ATPas 100.0 8.7E-40 3E-44 358.5 20.9 219 855-1093 4-229 (250)
50 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-39 4.2E-44 372.7 22.4 204 186-432 20-229 (353)
51 1g6h_A High-affinity branched- 100.0 1.8E-39 6.2E-44 357.5 22.8 215 184-430 20-239 (257)
52 2yz2_A Putative ABC transporte 100.0 7.9E-40 2.7E-44 362.0 19.7 200 880-1092 20-222 (266)
53 2onk_A Molybdate/tungstate ABC 100.0 9.9E-40 3.4E-44 355.1 20.1 196 882-1092 14-211 (240)
54 1ji0_A ABC transporter; ATP bi 100.0 3.9E-39 1.3E-43 351.2 24.2 204 184-432 19-227 (240)
55 2onk_A Molybdate/tungstate ABC 100.0 3.5E-39 1.2E-43 350.8 22.1 202 186-433 14-216 (240)
56 3nh6_A ATP-binding cassette SU 100.0 1E-38 3.4E-43 357.7 24.7 208 184-433 67-277 (306)
57 3nh6_A ATP-binding cassette SU 100.0 2.5E-39 8.7E-44 362.6 19.6 213 852-1093 51-273 (306)
58 2zu0_C Probable ATP-dependent 100.0 1E-38 3.5E-43 353.1 23.4 221 854-1093 20-250 (267)
59 2nq2_C Hypothetical ABC transp 100.0 1.3E-38 4.3E-43 349.3 23.5 217 855-1104 5-226 (253)
60 2qi9_C Vitamin B12 import ATP- 100.0 6.6E-39 2.3E-43 350.2 21.2 194 882-1093 15-218 (249)
61 2ixe_A Antigen peptide transpo 100.0 6E-39 2E-43 355.5 18.8 217 854-1093 16-241 (271)
62 2yz2_A Putative ABC transporte 100.0 2.3E-38 8E-43 350.2 23.2 205 184-433 20-227 (266)
63 1sgw_A Putative ABC transporte 100.0 2.7E-39 9.1E-44 345.0 14.8 201 854-1086 10-210 (214)
64 2ff7_A Alpha-hemolysin translo 100.0 1.6E-38 5.6E-43 347.4 19.3 211 854-1092 7-227 (247)
65 2ff7_A Alpha-hemolysin translo 100.0 1.8E-37 6E-42 339.2 24.3 200 184-432 22-231 (247)
66 2ihy_A ABC transporter, ATP-bi 100.0 6.3E-38 2.2E-42 348.3 20.5 208 184-431 34-250 (279)
67 2ixe_A Antigen peptide transpo 100.0 9E-38 3.1E-42 346.0 20.2 209 184-433 32-245 (271)
68 2nq2_C Hypothetical ABC transp 100.0 3.1E-37 1.1E-41 338.3 23.9 197 184-431 18-215 (253)
69 1mv5_A LMRA, multidrug resista 100.0 2.5E-38 8.5E-43 345.7 14.9 198 880-1093 15-222 (243)
70 2d2e_A SUFC protein; ABC-ATPas 100.0 2.8E-37 9.5E-42 338.6 22.8 206 184-430 16-230 (250)
71 2qi9_C Vitamin B12 import ATP- 100.0 1.7E-37 5.9E-42 339.0 20.9 197 185-431 14-220 (249)
72 2zu0_C Probable ATP-dependent 100.0 8.5E-37 2.9E-41 337.7 24.1 220 184-440 33-260 (267)
73 1mv5_A LMRA, multidrug resista 100.0 1.6E-37 5.3E-42 339.3 16.1 202 184-433 15-226 (243)
74 2ghi_A Transport protein; mult 100.0 3E-37 1E-41 340.0 18.3 212 854-1093 17-238 (260)
75 2pjz_A Hypothetical protein ST 100.0 3E-37 1E-41 339.6 17.4 190 880-1092 18-210 (263)
76 2ghi_A Transport protein; mult 100.0 2.2E-36 7.4E-41 333.1 24.0 200 184-433 33-242 (260)
77 2pjz_A Hypothetical protein ST 100.0 2.1E-36 7.1E-41 332.9 22.2 194 184-432 18-214 (263)
78 1sgw_A Putative ABC transporte 100.0 6.7E-37 2.3E-41 326.5 15.6 188 185-422 23-210 (214)
79 3b5x_A Lipid A export ATP-bind 100.0 5.6E-35 1.9E-39 358.8 34.2 214 853-1093 340-563 (582)
80 3gd7_A Fusion complex of cysti 100.0 9.2E-37 3.1E-41 352.3 15.5 200 184-433 34-242 (390)
81 2pze_A Cystic fibrosis transme 100.0 3.1E-36 1E-40 326.0 18.6 200 854-1092 6-213 (229)
82 3gd7_A Fusion complex of cysti 100.0 1E-36 3.4E-41 352.0 14.8 212 853-1093 18-238 (390)
83 3qf4_B Uncharacterized ABC tra 100.0 3.5E-35 1.2E-39 361.3 29.4 212 853-1093 353-574 (598)
84 2cbz_A Multidrug resistance-as 100.0 4E-36 1.4E-40 326.6 18.0 200 855-1093 4-213 (237)
85 2pze_A Cystic fibrosis transme 100.0 9E-36 3.1E-40 322.3 19.6 196 184-432 21-217 (229)
86 3qf4_A ABC transporter, ATP-bi 100.0 3.6E-36 1.2E-40 368.9 16.7 215 852-1094 339-563 (587)
87 2yl4_A ATP-binding cassette SU 100.0 2.8E-35 9.4E-40 362.4 24.4 218 853-1094 339-567 (595)
88 4a82_A Cystic fibrosis transme 100.0 2.9E-35 9.8E-40 360.8 24.3 208 184-433 354-564 (578)
89 2yl4_A ATP-binding cassette SU 100.0 4.4E-35 1.5E-39 360.7 24.7 204 184-433 357-570 (595)
90 3qf4_A ABC transporter, ATP-bi 100.0 2.9E-35 1E-39 360.9 22.8 208 184-433 356-566 (587)
91 4a82_A Cystic fibrosis transme 100.0 1.2E-35 4E-40 364.3 18.7 214 852-1093 337-560 (578)
92 2cbz_A Multidrug resistance-as 100.0 1.7E-35 5.7E-40 321.8 17.6 196 184-433 18-217 (237)
93 3b60_A Lipid A export ATP-bind 100.0 1.5E-35 5.1E-40 363.9 19.1 214 853-1093 340-563 (582)
94 3b60_A Lipid A export ATP-bind 100.0 4.6E-35 1.6E-39 359.6 22.2 202 184-433 356-567 (582)
95 3b5x_A Lipid A export ATP-bind 100.0 5.8E-35 2E-39 358.6 21.2 202 184-433 356-567 (582)
96 3qf4_B Uncharacterized ABC tra 100.0 4.5E-35 1.5E-39 360.3 18.1 208 184-433 368-578 (598)
97 4f4c_A Multidrug resistance pr 100.0 8.3E-35 2.8E-39 385.6 19.4 211 183-433 1091-1304(1321)
98 2bbs_A Cystic fibrosis transme 100.0 2.6E-34 9E-39 320.4 18.6 184 881-1093 52-243 (290)
99 2bbs_A Cystic fibrosis transme 100.0 8.1E-34 2.8E-38 316.5 18.1 195 184-432 51-246 (290)
100 3g5u_A MCG1178, multidrug resi 100.0 6E-32 2.1E-36 357.4 31.9 215 852-1093 385-609 (1284)
101 3bk7_A ABC transporter ATP-bin 100.0 1.5E-30 5.1E-35 317.8 20.1 191 186-433 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 2.3E-30 7.7E-35 313.2 18.9 191 186-433 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 6.2E-30 2.1E-34 308.5 20.8 192 186-432 283-476 (538)
104 1tf7_A KAIC; homohexamer, hexa 100.0 5.4E-32 1.9E-36 328.4 0.1 153 887-1082 275-442 (525)
105 3j16_B RLI1P; ribosome recycli 100.0 1.5E-29 5.3E-34 308.2 19.3 193 184-433 360-559 (608)
106 3ux8_A Excinuclease ABC, A sub 100.0 1.1E-29 3.7E-34 317.1 14.7 205 880-1093 31-294 (670)
107 2iw3_A Elongation factor 3A; a 100.0 3E-29 1E-33 315.5 18.3 182 878-1092 446-630 (986)
108 2r6f_A Excinuclease ABC subuni 99.9 4E-25 1.4E-29 275.7 16.7 106 319-432 826-941 (972)
109 3pih_A Uvrabc system protein A 99.9 2.1E-24 7.2E-29 271.7 23.0 109 317-433 784-902 (916)
110 2ygr_A Uvrabc system protein A 99.9 1.7E-24 5.7E-29 271.1 18.3 108 318-433 843-960 (993)
111 4aby_A DNA repair protein RECN 99.9 1.1E-24 3.8E-29 257.0 14.9 203 881-1089 49-380 (415)
112 2npi_A Protein CLP1; CLP1-PCF1 99.9 5.1E-27 1.7E-31 277.6 -5.4 186 188-432 129-337 (460)
113 2npi_A Protein CLP1; CLP1-PCF1 99.9 3.7E-27 1.3E-31 278.8 -7.1 195 884-1104 129-349 (460)
114 2vf7_A UVRA2, excinuclease ABC 99.9 4.4E-24 1.5E-28 266.8 17.9 108 317-432 709-826 (842)
115 4aby_A DNA repair protein RECN 99.9 2.6E-23 8.9E-28 245.3 16.0 236 184-426 48-381 (415)
116 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.6E-22 5.4E-27 233.7 17.6 82 1004-1088 277-364 (365)
117 3b85_A Phosphate starvation-in 99.9 7.1E-26 2.4E-30 240.6 -13.0 145 877-1067 10-159 (208)
118 4gp7_A Metallophosphoesterase; 99.9 2.9E-23 1E-27 214.2 3.2 150 885-1076 1-167 (171)
119 1e69_A Chromosome segregation 99.9 6E-22 2E-26 225.5 10.7 87 1004-1093 217-309 (322)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 7.7E-21 2.6E-25 219.5 17.4 81 341-424 278-364 (365)
121 3b85_A Phosphate starvation-in 99.8 3.8E-23 1.3E-27 219.6 -5.9 145 182-403 11-158 (208)
122 1e69_A Chromosome segregation 99.8 8.4E-21 2.9E-25 216.0 11.1 86 342-431 219-311 (322)
123 1tq4_A IIGP1, interferon-induc 99.8 3.8E-23 1.3E-27 240.1 -9.6 171 880-1078 36-248 (413)
124 1znw_A Guanylate kinase, GMP k 99.8 5.3E-24 1.8E-28 226.8 -16.2 184 879-1084 8-205 (207)
125 1tq4_A IIGP1, interferon-induc 99.8 9.3E-23 3.2E-27 236.9 -8.4 172 183-414 35-247 (413)
126 2v9p_A Replication protein E1; 99.8 3.9E-23 1.3E-27 230.6 -12.5 158 184-438 113-271 (305)
127 1ye8_A Protein THEP1, hypothet 99.8 3.6E-21 1.2E-25 199.5 2.3 151 895-1091 2-162 (178)
128 4gp7_A Metallophosphoesterase; 99.8 7E-21 2.4E-25 196.3 4.4 60 343-403 84-159 (171)
129 1ye8_A Protein THEP1, hypothet 99.8 4E-21 1.4E-25 199.2 2.0 149 199-424 2-159 (178)
130 3b9q_A Chloroplast SRP recepto 99.8 1.7E-20 5.8E-25 210.6 0.2 175 187-422 90-284 (302)
131 3sop_A Neuronal-specific septi 99.8 2.2E-20 7.5E-25 206.5 -2.0 146 199-402 4-149 (270)
132 3b9q_A Chloroplast SRP recepto 99.8 3.5E-20 1.2E-24 208.0 -0.5 172 883-1083 90-282 (302)
133 2v9p_A Replication protein E1; 99.8 2.4E-22 8.2E-27 224.3 -19.0 159 855-1092 102-261 (305)
134 3sop_A Neuronal-specific septi 99.7 1.1E-20 3.7E-25 209.0 -7.6 148 895-1067 4-151 (270)
135 2pt7_A CAG-ALFA; ATPase, prote 99.7 2.4E-19 8.4E-24 203.9 2.9 131 881-1083 159-290 (330)
136 2og2_A Putative signal recogni 99.7 1.4E-19 4.6E-24 206.8 0.4 174 188-422 148-341 (359)
137 1z6g_A Guanylate kinase; struc 99.7 2.8E-22 9.5E-27 215.2 -20.6 177 881-1078 11-205 (218)
138 3qkt_A DNA double-strand break 99.7 1.4E-17 4.8E-22 190.7 16.9 76 1004-1081 246-327 (339)
139 2og2_A Putative signal recogni 99.7 1.9E-19 6.5E-24 205.6 0.1 153 884-1065 148-313 (359)
140 2dpy_A FLII, flagellum-specifi 99.7 1.2E-19 4.1E-24 213.5 -2.5 184 870-1092 134-339 (438)
141 2o5v_A DNA replication and rep 99.7 2.4E-17 8.1E-22 188.7 14.0 81 342-431 265-354 (359)
142 2dpy_A FLII, flagellum-specifi 99.7 5.7E-20 1.9E-24 216.3 -8.1 179 183-431 144-342 (438)
143 1z6g_A Guanylate kinase; struc 99.7 3.1E-21 1E-25 207.1 -18.0 173 185-419 11-193 (218)
144 2o5v_A DNA replication and rep 99.7 2.5E-17 8.6E-22 188.5 12.8 79 1006-1093 265-352 (359)
145 1znw_A Guanylate kinase, GMP k 99.7 7.6E-21 2.6E-25 202.3 -15.8 184 184-418 9-202 (207)
146 1cr0_A DNA primase/helicase; R 99.7 3.7E-18 1.3E-22 191.9 4.8 182 881-1083 23-235 (296)
147 3aez_A Pantothenate kinase; tr 99.7 3.7E-19 1.3E-23 200.5 -5.4 128 189-375 81-209 (312)
148 3qkt_A DNA double-strand break 99.7 3E-16 1E-20 179.7 18.0 75 341-418 247-327 (339)
149 1cr0_A DNA primase/helicase; R 99.7 1.1E-17 3.7E-22 188.0 4.9 187 183-422 21-237 (296)
150 2pt7_A CAG-ALFA; ATPase, prote 99.7 8.2E-18 2.8E-22 191.3 2.7 133 186-422 160-292 (330)
151 2o8b_B DNA mismatch repair pro 99.7 6.3E-18 2.1E-22 216.9 0.6 175 880-1111 769-956 (1022)
152 2jeo_A Uridine-cytidine kinase 99.7 1.1E-17 3.9E-22 182.6 1.1 179 182-434 10-188 (245)
153 4ad8_A DNA repair protein RECN 99.7 1.6E-16 5.5E-21 192.2 10.9 76 341-420 395-473 (517)
154 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 4.4E-16 1.5E-20 155.7 10.3 76 1004-1081 55-136 (148)
155 3aez_A Pantothenate kinase; tr 99.6 1.2E-18 4.2E-23 196.3 -9.7 156 890-1080 87-242 (312)
156 2obl_A ESCN; ATPase, hydrolase 99.6 2.9E-17 1E-21 187.5 1.4 176 879-1092 58-250 (347)
157 2jeo_A Uridine-cytidine kinase 99.6 1.1E-17 3.9E-22 182.6 -2.1 155 878-1065 10-164 (245)
158 2ehv_A Hypothetical protein PH 99.6 1.9E-17 6.6E-22 180.7 -0.3 167 883-1081 19-206 (251)
159 3thx_A DNA mismatch repair pro 99.6 6E-16 2.1E-20 196.1 12.7 148 879-1091 648-807 (934)
160 2eyu_A Twitching motility prot 99.6 1E-16 3.5E-21 176.2 4.9 131 881-1081 15-146 (261)
161 3thx_A DNA mismatch repair pro 99.6 7.5E-16 2.6E-20 195.2 10.2 89 341-431 720-811 (934)
162 1tf7_A KAIC; homohexamer, hexa 99.6 1.2E-15 4E-20 185.1 11.3 156 191-421 275-444 (525)
163 2obl_A ESCN; ATPase, hydrolase 99.6 4.6E-17 1.6E-21 185.9 -2.5 178 183-431 58-253 (347)
164 3thx_B DNA mismatch repair pro 99.6 1.3E-15 4.5E-20 192.4 9.3 145 879-1077 659-805 (918)
165 4a74_A DNA repair and recombin 99.6 1.4E-16 4.9E-21 171.4 -1.5 157 883-1083 14-200 (231)
166 4a74_A DNA repair and recombin 99.6 5.9E-16 2E-20 166.6 3.0 155 192-421 20-201 (231)
167 1ewq_A DNA mismatch repair pro 99.6 5.1E-16 1.8E-20 193.5 1.8 128 880-1067 566-699 (765)
168 2o8b_B DNA mismatch repair pro 99.5 5.2E-16 1.8E-20 199.1 0.6 159 184-429 769-938 (1022)
169 2qnr_A Septin-2, protein NEDD5 99.5 2.6E-16 8.8E-21 176.9 -2.2 159 876-1067 7-168 (301)
170 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 1.6E-14 5.5E-19 144.3 10.5 79 341-422 56-142 (148)
171 3asz_A Uridine kinase; cytidin 99.5 2.7E-17 9.3E-22 175.1 -11.3 145 890-1066 3-161 (211)
172 3asz_A Uridine kinase; cytidin 99.5 9.2E-17 3.1E-21 171.0 -7.4 145 194-402 3-160 (211)
173 2eyu_A Twitching motility prot 99.5 2.2E-15 7.6E-20 165.6 2.8 133 185-419 15-147 (261)
174 1wb9_A DNA mismatch repair pro 99.5 3E-15 1E-19 187.6 4.1 152 880-1087 595-748 (800)
175 1rj9_A FTSY, signal recognitio 99.5 1.3E-15 4.5E-20 170.8 0.2 149 196-403 101-258 (304)
176 1rj9_A FTSY, signal recognitio 99.5 1.3E-15 4.5E-20 170.8 0.2 148 892-1066 101-258 (304)
177 2ehv_A Hypothetical protein PH 99.5 2E-15 7E-20 164.6 1.3 169 186-418 18-206 (251)
178 1pzn_A RAD51, DNA repair and r 99.5 1.3E-15 4.5E-20 174.6 -0.4 167 186-427 119-309 (349)
179 1w1w_A Structural maintenance 99.5 4.2E-14 1.5E-18 167.2 12.4 74 342-418 333-410 (430)
180 1pzn_A RAD51, DNA repair and r 99.5 1.1E-15 3.8E-20 175.2 -2.4 143 882-1067 119-287 (349)
181 3thx_B DNA mismatch repair pro 99.5 2E-14 6.8E-19 181.7 8.5 145 184-414 660-805 (918)
182 1nlf_A Regulatory protein REPA 99.5 6E-14 2.1E-18 156.1 11.0 151 889-1067 26-182 (279)
183 2qnr_A Septin-2, protein NEDD5 99.5 1.1E-15 3.7E-20 171.8 -3.6 154 183-401 10-165 (301)
184 1ewq_A DNA mismatch repair pro 99.5 1.1E-14 3.6E-19 181.7 4.7 132 184-411 566-704 (765)
185 2w0m_A SSO2452; RECA, SSPF, un 99.5 9.9E-15 3.4E-19 157.1 3.1 167 881-1083 10-192 (235)
186 2w0m_A SSO2452; RECA, SSPF, un 99.5 1E-13 3.5E-18 149.1 10.0 78 343-420 104-192 (235)
187 3jvv_A Twitching mobility prot 99.5 1.4E-14 4.9E-19 165.8 3.3 131 882-1081 114-244 (356)
188 2i3b_A HCR-ntpase, human cance 99.5 2.3E-16 7.7E-21 164.8 -10.8 157 197-425 1-168 (189)
189 1nlf_A Regulatory protein REPA 99.4 2.6E-13 8.8E-18 151.0 11.8 151 193-403 26-181 (279)
190 3szr_A Interferon-induced GTP- 99.4 1.9E-15 6.7E-20 185.5 -6.0 165 200-433 48-237 (608)
191 2i3b_A HCR-ntpase, human cance 99.4 2.7E-15 9.2E-20 156.7 -4.6 158 893-1091 1-170 (189)
192 1wb9_A DNA mismatch repair pro 99.4 4.1E-14 1.4E-18 177.5 3.8 156 184-426 595-751 (800)
193 1pui_A ENGB, probable GTP-bind 99.4 8.2E-15 2.8E-19 155.3 -2.7 167 882-1058 17-202 (210)
194 3szr_A Interferon-induced GTP- 99.4 1.9E-14 6.5E-19 176.7 -0.6 141 888-1067 43-197 (608)
195 2qag_B Septin-6, protein NEDD5 99.4 2.2E-14 7.6E-19 166.3 -0.2 179 876-1065 24-218 (427)
196 3kta_B Chromosome segregation 99.4 8.2E-13 2.8E-17 135.4 11.1 79 1004-1085 62-145 (173)
197 2qag_C Septin-7; cell cycle, c 99.4 1.9E-14 6.5E-19 167.8 -2.0 154 877-1067 21-178 (418)
198 4ad8_A DNA repair protein RECN 99.4 6.6E-13 2.3E-17 160.5 9.4 75 1005-1082 395-472 (517)
199 2cvh_A DNA repair and recombin 99.3 1.2E-11 4E-16 131.9 15.4 153 882-1083 8-185 (220)
200 3kta_B Chromosome segregation 99.3 1E-11 3.5E-16 127.2 13.7 89 341-433 63-158 (173)
201 1s96_A Guanylate kinase, GMP k 99.3 4.2E-14 1.4E-18 151.2 -4.8 126 889-1067 12-141 (219)
202 2cvh_A DNA repair and recombin 99.3 3.5E-12 1.2E-16 135.9 9.6 78 343-420 85-185 (220)
203 2qag_C Septin-7; cell cycle, c 99.3 4.2E-13 1.4E-17 156.5 1.8 150 183-402 23-176 (418)
204 3jvv_A Twitching mobility prot 99.3 3.6E-13 1.2E-17 154.1 1.3 59 352-420 188-246 (356)
205 1zp6_A Hypothetical protein AT 99.3 4E-14 1.4E-18 147.9 -6.1 139 193-387 5-146 (191)
206 1s96_A Guanylate kinase, GMP k 99.3 1.5E-13 5E-18 147.0 -2.1 148 193-436 12-163 (219)
207 1zp6_A Hypothetical protein AT 99.3 9.7E-15 3.3E-19 152.6 -11.2 154 889-1064 5-159 (191)
208 1lw7_A Transcriptional regulat 99.3 4.1E-15 1.4E-19 172.0 -16.2 163 186-417 157-341 (365)
209 2ewv_A Twitching motility prot 99.3 8.7E-13 3E-17 152.4 3.3 126 882-1077 127-253 (372)
210 2gza_A Type IV secretion syste 99.3 1.1E-12 3.8E-17 151.1 3.1 137 882-1083 164-302 (361)
211 1htw_A HI0065; nucleotide-bind 99.3 3.1E-13 1.1E-17 136.8 -1.7 78 184-268 20-97 (158)
212 2bdt_A BH3686; alpha-beta prot 99.2 1.2E-14 4E-19 151.9 -13.6 170 893-1093 2-180 (189)
213 2gza_A Type IV secretion syste 99.2 3E-12 1E-16 147.4 5.0 136 186-421 164-303 (361)
214 2bdt_A BH3686; alpha-beta prot 99.2 1.1E-14 3.6E-19 152.2 -15.4 173 197-431 2-182 (189)
215 1lw7_A Transcriptional regulat 99.2 5.6E-14 1.9E-18 162.5 -11.2 167 882-1081 157-342 (365)
216 2bbw_A Adenylate kinase 4, AK4 99.2 2E-13 6.7E-18 149.0 -7.2 150 196-390 26-198 (246)
217 1pui_A ENGB, probable GTP-bind 99.2 4.2E-13 1.4E-17 142.1 -4.6 65 321-390 132-198 (210)
218 2yhs_A FTSY, cell division pro 99.2 1.3E-12 4.4E-17 153.2 -1.1 81 187-270 283-372 (503)
219 1nij_A Hypothetical protein YJ 99.2 9.7E-15 3.3E-19 165.5 -18.7 154 894-1066 5-189 (318)
220 2qag_B Septin-6, protein NEDD5 99.2 3.5E-12 1.2E-16 148.0 2.1 165 184-389 28-206 (427)
221 2bbw_A Adenylate kinase 4, AK4 99.2 4E-14 1.4E-18 154.5 -13.5 147 892-1055 26-199 (246)
222 2f1r_A Molybdopterin-guanine d 99.2 7.7E-14 2.6E-18 143.1 -10.7 112 198-364 3-125 (171)
223 2rcn_A Probable GTPase ENGC; Y 99.2 2.6E-12 8.7E-17 146.2 0.7 122 883-1021 206-328 (358)
224 3auy_A DNA double-strand break 99.2 5.1E-11 1.7E-15 137.9 11.2 78 1004-1084 278-362 (371)
225 1htw_A HI0065; nucleotide-bind 99.2 6.1E-13 2.1E-17 134.6 -4.4 81 877-963 17-97 (158)
226 1n0w_A DNA repair protein RAD5 99.2 1.2E-11 4.2E-16 133.8 5.5 156 883-1083 13-209 (243)
227 2rcn_A Probable GTPase ENGC; Y 99.2 4.2E-12 1.4E-16 144.5 0.7 121 187-357 206-328 (358)
228 2ewv_A Twitching motility prot 99.2 4.5E-12 1.5E-16 146.5 0.9 131 186-418 127-257 (372)
229 1n0w_A DNA repair protein RAD5 99.1 2.9E-11 9.9E-16 130.9 6.3 61 359-420 118-209 (243)
230 2yhs_A FTSY, cell division pro 99.1 8.8E-12 3E-16 146.2 1.7 153 883-1064 283-447 (503)
231 2qm8_A GTPase/ATPase; G protei 99.1 1.4E-13 4.7E-18 157.1 -13.3 167 880-1054 42-260 (337)
232 1w1w_A Structural maintenance 99.1 9E-11 3.1E-15 138.6 9.6 76 1005-1082 332-411 (430)
233 2kjq_A DNAA-related protein; s 99.1 4.4E-11 1.5E-15 119.9 5.4 44 1022-1066 81-125 (149)
234 1nij_A Hypothetical protein YJ 99.1 1.6E-13 5.6E-18 155.4 -14.1 157 198-404 5-190 (318)
235 1odf_A YGR205W, hypothetical 3 99.1 6.6E-12 2.3E-16 139.9 -0.9 132 195-377 29-169 (290)
236 3e70_C DPA, signal recognition 99.1 1.8E-11 6.1E-16 138.5 2.4 73 194-269 126-207 (328)
237 1udx_A The GTP-binding protein 99.1 3E-12 1E-16 149.1 -4.3 158 883-1064 147-306 (416)
238 2qm8_A GTPase/ATPase; G protei 99.1 1.5E-12 5.1E-17 148.5 -7.4 182 184-389 42-259 (337)
239 1udx_A The GTP-binding protein 99.1 6.5E-12 2.2E-16 146.3 -2.3 168 187-412 147-317 (416)
240 3ec2_A DNA replication protein 99.1 1.1E-10 3.7E-15 120.7 6.4 46 1022-1067 98-144 (180)
241 2f1r_A Molybdopterin-guanine d 99.1 1.1E-12 3.9E-17 134.3 -8.6 139 894-1057 3-164 (171)
242 3e70_C DPA, signal recognition 99.0 6.7E-11 2.3E-15 133.8 3.4 144 889-1065 125-278 (328)
243 1p9r_A General secretion pathw 99.0 9.7E-13 3.3E-17 153.5 -13.6 145 869-1030 145-315 (418)
244 2yv5_A YJEQ protein; hydrolase 99.0 9.5E-11 3.2E-15 131.6 3.1 124 195-355 163-300 (302)
245 2oap_1 GSPE-2, type II secreti 99.0 3.3E-13 1.1E-17 161.6 -18.1 181 880-1075 247-458 (511)
246 3auy_A DNA double-strand break 99.0 6.8E-10 2.3E-14 128.4 10.2 74 341-418 279-359 (371)
247 3ec2_A DNA replication protein 99.0 1.1E-10 3.8E-15 120.6 2.9 48 358-406 98-146 (180)
248 1p9r_A General secretion pathw 99.0 7.1E-12 2.4E-16 146.2 -7.9 137 184-365 156-314 (418)
249 1odf_A YGR205W, hypothetical 3 99.0 3E-11 1E-15 134.6 -2.9 132 891-1040 29-168 (290)
250 3lda_A DNA repair protein RAD5 99.0 4.5E-10 1.5E-14 130.3 6.7 151 888-1083 173-363 (400)
251 2oap_1 GSPE-2, type II secreti 98.9 7.1E-12 2.4E-16 150.1 -10.3 85 184-271 247-331 (511)
252 2yv5_A YJEQ protein; hydrolase 98.9 4E-11 1.4E-15 134.7 -4.7 123 889-1020 161-301 (302)
253 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2.6E-12 8.9E-17 148.3 -15.3 168 193-429 16-209 (392)
254 1sxj_E Activator 1 40 kDa subu 98.9 1.3E-09 4.5E-14 125.0 6.6 135 896-1067 39-175 (354)
255 3lda_A DNA repair protein RAD5 98.9 1.1E-08 3.8E-13 118.6 13.7 63 359-421 272-364 (400)
256 2kjq_A DNAA-related protein; s 98.8 3.6E-09 1.2E-13 105.9 7.2 34 185-223 29-62 (149)
257 1sxj_E Activator 1 40 kDa subu 98.8 2.3E-09 8E-14 122.9 6.3 135 200-404 39-175 (354)
258 2x8a_A Nuclear valosin-contain 98.8 7E-12 2.4E-16 138.9 -14.3 142 184-385 33-190 (274)
259 1u0l_A Probable GTPase ENGC; p 98.8 5.6E-10 1.9E-14 125.3 0.2 73 193-269 165-259 (301)
260 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 9.8E-12 3.3E-16 143.4 -14.9 171 889-1094 16-210 (392)
261 3c8u_A Fructokinase; YP_612366 98.8 4.1E-11 1.4E-15 127.1 -9.3 120 890-1034 19-140 (208)
262 1in4_A RUVB, holliday junction 98.8 4E-11 1.4E-15 136.8 -10.5 156 184-393 31-197 (334)
263 3c8u_A Fructokinase; YP_612366 98.8 4.9E-11 1.7E-15 126.5 -9.2 30 194-223 19-48 (208)
264 1lvg_A Guanylate kinase, GMP k 98.8 1.1E-11 3.7E-16 130.5 -14.5 57 353-419 116-173 (198)
265 1t9h_A YLOQ, probable GTPase E 98.7 1E-09 3.5E-14 122.6 -0.3 72 192-267 168-248 (307)
266 1sq5_A Pantothenate kinase; P- 98.7 2.8E-10 9.5E-15 128.3 -6.0 86 881-968 49-156 (308)
267 2x8a_A Nuclear valosin-contain 98.7 8E-12 2.7E-16 138.4 -18.7 143 879-1049 32-190 (274)
268 2r6a_A DNAB helicase, replicat 98.7 2.2E-08 7.4E-13 119.0 9.4 178 881-1083 191-399 (454)
269 1t9h_A YLOQ, probable GTPase E 98.7 1.4E-09 4.7E-14 121.6 -1.3 118 888-1013 168-302 (307)
270 1in4_A RUVB, holliday junction 98.7 1.7E-10 5.8E-15 131.6 -9.5 152 878-1054 29-194 (334)
271 1sq5_A Pantothenate kinase; P- 98.6 2.3E-09 8E-14 120.6 -2.3 73 195-272 78-155 (308)
272 2dr3_A UPF0273 protein PH0284; 98.6 1.8E-07 6.2E-12 101.0 12.7 61 359-419 127-196 (247)
273 2dr3_A UPF0273 protein PH0284; 98.6 5.7E-09 2E-13 112.9 0.5 68 1015-1082 117-196 (247)
274 1vma_A Cell division protein F 98.6 2.6E-08 9E-13 111.4 5.9 114 190-390 97-213 (306)
275 1ls1_A Signal recognition part 98.6 8.7E-08 3E-12 107.0 9.7 128 884-1063 91-219 (295)
276 2r6a_A DNAB helicase, replicat 98.6 1.5E-07 5.1E-12 111.8 12.2 184 183-422 189-401 (454)
277 3euj_A Chromosome partition pr 98.6 1.3E-08 4.4E-13 120.1 2.9 53 184-240 17-69 (483)
278 1vma_A Cell division protein F 98.6 2.4E-08 8.1E-13 111.8 4.3 112 886-1052 97-211 (306)
279 1u0l_A Probable GTPase ENGC; p 98.5 1.3E-08 4.5E-13 114.1 1.4 102 888-998 164-288 (301)
280 3k1j_A LON protease, ATP-depen 98.5 5.5E-09 1.9E-13 128.6 -2.4 159 184-387 47-227 (604)
281 2zr9_A Protein RECA, recombina 98.5 2.5E-07 8.4E-12 105.7 9.9 77 1013-1090 126-236 (349)
282 1iy2_A ATP-dependent metallopr 98.5 9.6E-11 3.3E-15 130.1 -18.5 131 877-1033 59-194 (278)
283 1ixz_A ATP-dependent metallopr 98.5 1.2E-10 4E-15 127.5 -17.9 132 878-1035 36-172 (254)
284 2px0_A Flagellar biosynthesis 98.4 2.9E-07 1E-11 102.7 9.1 141 891-1089 103-247 (296)
285 2px0_A Flagellar biosynthesis 98.4 2.4E-07 8.3E-12 103.3 8.4 143 195-425 103-247 (296)
286 3tr0_A Guanylate kinase, GMP k 98.4 9.4E-09 3.2E-13 108.1 -3.0 71 191-268 1-74 (205)
287 1ls1_A Signal recognition part 98.4 5.4E-07 1.8E-11 100.5 10.2 118 188-388 91-209 (295)
288 3k1j_A LON protease, ATP-depen 98.4 8.5E-09 2.9E-13 126.9 -5.8 161 878-1051 45-227 (604)
289 2ius_A DNA translocase FTSK; n 98.4 6.6E-09 2.3E-13 123.4 -6.5 179 885-1080 159-361 (512)
290 2zr9_A Protein RECA, recombina 98.4 4.5E-07 1.5E-11 103.5 8.2 78 350-427 127-237 (349)
291 1oix_A RAS-related protein RAB 98.3 1.4E-07 4.9E-12 98.1 3.2 38 1013-1052 152-189 (191)
292 3euj_A Chromosome partition pr 98.3 5.3E-08 1.8E-12 114.8 -0.4 50 881-933 18-67 (483)
293 1iy2_A ATP-dependent metallopr 98.3 9.4E-10 3.2E-14 122.0 -15.7 76 185-267 63-142 (278)
294 3tr0_A Guanylate kinase, GMP k 98.3 2.1E-08 7.3E-13 105.3 -4.6 69 887-961 1-72 (205)
295 3hr8_A Protein RECA; alpha and 98.3 5.4E-07 1.8E-11 102.6 6.1 32 192-223 56-87 (356)
296 1oix_A RAS-related protein RAB 98.3 1.1E-07 3.8E-12 98.9 -0.1 37 349-387 152-188 (191)
297 1ixz_A ATP-dependent metallopr 98.2 1.3E-09 4.6E-14 119.0 -15.7 76 185-267 39-118 (254)
298 2ius_A DNA translocase FTSK; n 98.2 1.4E-07 4.8E-12 112.0 -0.2 166 189-405 159-344 (512)
299 3lnc_A Guanylate kinase, GMP k 98.2 3.6E-07 1.2E-11 98.1 2.3 39 185-223 15-54 (231)
300 1qhl_A Protein (cell division 98.2 5.7E-08 1.9E-12 103.8 -4.4 59 191-253 22-91 (227)
301 2f9l_A RAB11B, member RAS onco 98.1 5.4E-07 1.8E-11 94.2 0.7 37 1015-1053 130-166 (199)
302 2ce7_A Cell division protein F 98.1 3.8E-06 1.3E-10 99.4 8.0 59 1009-1067 93-165 (476)
303 3lnc_A Guanylate kinase, GMP k 98.1 9.3E-07 3.2E-11 94.9 2.5 185 881-1080 15-208 (231)
304 4eun_A Thermoresistant glucoki 98.0 2.1E-07 7.3E-12 97.6 -3.8 70 192-268 24-95 (200)
305 2qtf_A Protein HFLX, GTP-bindi 98.0 2.9E-06 9.8E-11 97.4 5.1 158 199-390 181-353 (364)
306 4a1f_A DNAB helicase, replicat 98.0 5.5E-06 1.9E-10 93.6 7.2 130 183-399 32-162 (338)
307 1qhl_A Protein (cell division 98.0 2.1E-07 7.3E-12 99.4 -4.7 59 887-948 22-91 (227)
308 2qtf_A Protein HFLX, GTP-bindi 98.0 1E-05 3.5E-10 92.8 8.5 147 895-1054 181-353 (364)
309 2ce7_A Cell division protein F 97.9 1.3E-05 4.5E-10 94.8 9.1 34 186-221 40-73 (476)
310 3hr8_A Protein RECA; alpha and 97.9 1.8E-06 6E-11 98.3 1.4 35 882-916 48-84 (356)
311 2xau_A PRE-mRNA-splicing facto 97.9 5.5E-06 1.9E-10 104.4 5.5 78 1006-1084 190-269 (773)
312 3kta_A Chromosome segregation 97.9 4.8E-06 1.7E-10 85.5 4.0 36 188-224 18-53 (182)
313 4eun_A Thermoresistant glucoki 97.9 4.5E-07 1.5E-11 95.1 -4.1 55 888-948 24-80 (200)
314 4a1f_A DNAB helicase, replicat 97.9 7.8E-06 2.7E-10 92.4 5.1 128 882-1064 35-164 (338)
315 3bh0_A DNAB-like replicative h 97.9 6.8E-05 2.3E-09 84.3 12.9 38 183-220 54-91 (315)
316 1zu4_A FTSY; GTPase, signal re 97.8 3E-06 1E-10 95.4 0.7 80 186-268 94-186 (320)
317 2f9l_A RAB11B, member RAS onco 97.8 7.7E-06 2.6E-10 85.3 3.7 37 351-389 130-166 (199)
318 2e87_A Hypothetical protein PH 97.8 2.1E-05 7.1E-10 90.2 7.6 61 1005-1067 230-293 (357)
319 2j41_A Guanylate kinase; GMP, 97.8 6.4E-06 2.2E-10 86.3 2.6 32 193-224 2-33 (207)
320 3a00_A Guanylate kinase, GMP k 97.7 7.6E-06 2.6E-10 84.7 1.7 27 197-223 1-27 (186)
321 3nwj_A ATSK2; P loop, shikimat 97.7 3.7E-06 1.2E-10 91.3 -1.0 37 880-916 32-71 (250)
322 3vaa_A Shikimate kinase, SK; s 97.7 1.1E-05 3.8E-10 84.3 2.6 39 183-221 11-49 (199)
323 4e22_A Cytidylate kinase; P-lo 97.7 4.1E-06 1.4E-10 91.2 -1.4 63 186-254 19-96 (252)
324 2dhr_A FTSH; AAA+ protein, hex 97.7 1.2E-07 4.2E-12 112.8 -14.7 76 880-961 53-132 (499)
325 2dhr_A FTSH; AAA+ protein, hex 97.7 4.5E-07 1.5E-11 107.9 -10.0 75 185-266 54-132 (499)
326 2dy1_A Elongation factor G; tr 97.6 1.6E-05 5.5E-10 98.5 2.7 133 887-1068 3-138 (665)
327 3uie_A Adenylyl-sulfate kinase 97.6 3.3E-06 1.1E-10 88.5 -3.1 52 184-239 12-65 (200)
328 3nwj_A ATSK2; P loop, shikimat 97.6 4.6E-06 1.6E-10 90.5 -2.3 39 184-222 32-73 (250)
329 1kgd_A CASK, peripheral plasma 97.6 2.1E-05 7.3E-10 80.8 2.6 36 196-233 4-39 (180)
330 1lvg_A Guanylate kinase, GMP k 97.6 1.7E-05 5.9E-10 82.9 1.8 56 1017-1081 116-172 (198)
331 3kta_A Chromosome segregation 97.6 2.7E-05 9.3E-10 79.9 3.1 32 884-916 18-49 (182)
332 4e22_A Cytidylate kinase; P-lo 97.5 1E-05 3.5E-10 88.1 -0.5 57 891-949 25-96 (252)
333 2xau_A PRE-mRNA-splicing facto 97.5 4.1E-05 1.4E-09 96.4 4.5 71 343-414 191-262 (773)
334 1zu4_A FTSY; GTPase, signal re 97.5 1.7E-05 5.7E-10 89.4 0.6 78 882-961 94-184 (320)
335 3vaa_A Shikimate kinase, SK; s 97.5 3.6E-05 1.2E-09 80.4 3.2 36 881-916 13-48 (199)
336 2vp4_A Deoxynucleoside kinase; 97.4 2.7E-05 9.1E-10 83.5 1.2 42 190-238 13-54 (230)
337 1fnn_A CDC6P, cell division co 97.4 0.00055 1.9E-08 78.7 12.2 44 1023-1067 124-170 (389)
338 2e87_A Hypothetical protein PH 97.4 0.00032 1.1E-08 80.2 9.9 55 343-400 232-287 (357)
339 1jjv_A Dephospho-COA kinase; P 97.4 2.1E-05 7.2E-10 82.5 -0.1 71 1007-1081 60-131 (206)
340 1svm_A Large T antigen; AAA+ f 97.4 2.1E-05 7.1E-10 90.3 -0.2 44 184-233 156-199 (377)
341 3uie_A Adenylyl-sulfate kinase 97.4 2.8E-05 9.7E-10 81.3 0.8 50 880-932 12-63 (200)
342 2vp4_A Deoxynucleoside kinase; 97.4 3.3E-05 1.1E-09 82.7 1.3 40 887-932 14-53 (230)
343 3t34_A Dynamin-related protein 97.4 0.00031 1.1E-08 80.4 9.4 57 1007-1064 155-212 (360)
344 3a00_A Guanylate kinase, GMP k 97.4 4.4E-05 1.5E-09 78.8 1.9 26 893-918 1-26 (186)
345 2j41_A Guanylate kinase; GMP, 97.4 6E-05 2E-09 78.8 2.8 29 889-917 2-30 (207)
346 3tau_A Guanylate kinase, GMP k 97.4 8.2E-05 2.8E-09 78.3 3.8 29 195-223 6-34 (208)
347 3bh0_A DNAB-like replicative h 97.4 0.00019 6.6E-09 80.6 6.9 131 881-1064 56-189 (315)
348 1ega_A Protein (GTP-binding pr 97.3 0.00019 6.5E-09 80.1 6.7 64 1007-1078 101-170 (301)
349 1kgd_A CASK, peripheral plasma 97.3 7E-05 2.4E-09 76.9 2.6 27 891-917 3-29 (180)
350 2qt1_A Nicotinamide riboside k 97.3 0.00012 4.2E-09 76.7 4.1 44 193-259 17-60 (207)
351 3b9p_A CG5977-PA, isoform A; A 97.3 0.0012 3.9E-08 73.3 12.3 27 195-221 52-78 (297)
352 1v5w_A DMC1, meiotic recombina 97.3 0.00091 3.1E-08 76.0 11.4 33 883-915 111-144 (343)
353 1knq_A Gluconate kinase; ALFA/ 97.3 8.4E-05 2.9E-09 75.6 2.5 36 195-237 6-41 (175)
354 1rz3_A Hypothetical protein rb 97.3 6.5E-05 2.2E-09 78.6 1.6 41 194-237 19-59 (201)
355 3ney_A 55 kDa erythrocyte memb 97.3 0.0001 3.6E-09 76.6 3.1 28 195-222 17-44 (197)
356 2dy1_A Elongation factor G; tr 97.2 5.2E-05 1.8E-09 93.9 0.7 47 191-239 3-49 (665)
357 2z43_A DNA repair and recombin 97.2 0.00096 3.3E-08 75.2 10.9 36 186-221 95-131 (324)
358 1svm_A Large T antigen; AAA+ f 97.2 6.3E-05 2.1E-09 86.4 1.0 143 881-1035 157-312 (377)
359 3t34_A Dynamin-related protein 97.2 0.00034 1.2E-08 80.2 7.2 34 184-220 24-57 (360)
360 1v5w_A DMC1, meiotic recombina 97.2 0.0017 5.8E-08 73.8 12.6 35 186-220 110-145 (343)
361 3b9p_A CG5977-PA, isoform A; A 97.2 0.0014 4.9E-08 72.5 11.3 59 1008-1066 97-169 (297)
362 1fnn_A CDC6P, cell division co 97.1 0.0027 9.3E-08 72.8 13.3 25 199-223 46-70 (389)
363 2z43_A DNA repair and recombin 97.1 0.0011 3.8E-08 74.7 9.6 33 883-915 96-129 (324)
364 2q6t_A DNAB replication FORK h 97.1 0.0023 7.7E-08 75.4 12.6 38 184-221 187-224 (444)
365 3tau_A Guanylate kinase, GMP k 97.1 0.00018 6.3E-09 75.6 2.7 28 891-918 6-33 (208)
366 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00025 8.6E-09 70.5 3.5 29 885-914 16-44 (149)
367 3cr8_A Sulfate adenylyltranfer 97.0 0.00013 4.4E-09 87.9 1.3 42 193-237 365-408 (552)
368 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00031 1.1E-08 69.8 3.9 30 189-219 16-45 (149)
369 3tqc_A Pantothenate kinase; bi 97.0 7.7E-05 2.6E-09 83.7 -1.1 25 199-223 94-118 (321)
370 1kag_A SKI, shikimate kinase I 97.0 0.00025 8.5E-09 71.8 2.5 27 196-222 3-29 (173)
371 2qt1_A Nicotinamide riboside k 97.0 0.00039 1.3E-08 72.8 4.0 29 889-917 17-45 (207)
372 3tqc_A Pantothenate kinase; bi 97.0 6E-05 2E-09 84.6 -2.5 41 877-917 70-116 (321)
373 2z4s_A Chromosomal replication 96.9 0.00043 1.5E-08 81.5 4.4 45 1023-1067 193-238 (440)
374 2z4s_A Chromosomal replication 96.9 0.00031 1.1E-08 82.7 3.0 47 359-406 193-240 (440)
375 3kl4_A SRP54, signal recogniti 96.9 0.00095 3.3E-08 77.8 7.0 25 892-916 96-120 (433)
376 3cf0_A Transitional endoplasmi 96.9 0.0012 4E-08 73.7 7.3 29 194-222 46-74 (301)
377 1lv7_A FTSH; alpha/beta domain 96.9 0.0029 9.9E-08 68.5 10.1 34 187-222 37-70 (257)
378 3ney_A 55 kDa erythrocyte memb 96.8 0.00039 1.3E-08 72.3 2.6 27 891-917 17-43 (197)
379 1knq_A Gluconate kinase; ALFA/ 96.8 0.00043 1.5E-08 70.3 2.5 36 891-932 6-41 (175)
380 2p67_A LAO/AO transport system 96.8 0.00014 4.9E-09 82.7 -1.5 48 184-234 43-90 (341)
381 1rz3_A Hypothetical protein rb 96.8 0.00021 7.3E-09 74.6 -0.1 41 889-931 18-58 (201)
382 2www_A Methylmalonic aciduria 96.7 0.00039 1.3E-08 79.3 1.8 40 195-237 72-111 (349)
383 1ypw_A Transitional endoplasmi 96.7 0.0011 3.7E-08 83.9 5.9 30 888-917 233-262 (806)
384 1ypw_A Transitional endoplasmi 96.7 0.0011 3.6E-08 84.0 5.7 32 192-223 233-264 (806)
385 1u94_A RECA protein, recombina 96.7 0.014 4.9E-07 66.3 14.4 30 192-221 58-87 (356)
386 4eaq_A DTMP kinase, thymidylat 96.7 0.00062 2.1E-08 72.8 2.8 38 186-223 12-52 (229)
387 3ice_A Transcription terminati 96.7 0.00048 1.6E-08 78.0 1.9 32 885-916 166-197 (422)
388 2qby_A CDC6 homolog 1, cell di 96.6 0.00048 1.6E-08 78.9 1.6 26 891-916 43-68 (386)
389 3cf0_A Transitional endoplasmi 96.6 0.0024 8.2E-08 71.1 7.3 30 888-917 44-73 (301)
390 1kag_A SKI, shikimate kinase I 96.6 0.00062 2.1E-08 68.8 2.0 26 892-917 3-28 (173)
391 2p67_A LAO/AO transport system 96.6 0.00028 9.5E-09 80.2 -0.9 38 879-916 42-79 (341)
392 3kl4_A SRP54, signal recogniti 96.6 0.0036 1.2E-07 72.8 8.5 35 196-233 96-130 (433)
393 4fcw_A Chaperone protein CLPB; 96.6 0.0048 1.6E-07 68.6 9.2 28 196-223 46-73 (311)
394 2pez_A Bifunctional 3'-phospho 96.6 0.00059 2E-08 69.6 1.5 39 195-237 3-43 (179)
395 1mky_A Probable GTP-binding pr 96.5 0.0018 6.3E-08 76.1 5.9 71 198-268 181-263 (439)
396 3qks_A DNA double-strand break 96.5 0.0012 4E-08 69.2 3.5 29 885-914 16-44 (203)
397 2gj8_A MNME, tRNA modification 96.5 0.0022 7.5E-08 64.9 5.4 27 195-221 2-28 (172)
398 2gj8_A MNME, tRNA modification 96.5 0.0023 7.7E-08 64.8 5.5 26 891-916 2-27 (172)
399 3m6a_A ATP-dependent protease 96.5 0.00048 1.7E-08 83.3 0.5 46 186-235 98-143 (543)
400 3qks_A DNA double-strand break 96.5 0.0015 5E-08 68.5 3.9 30 189-219 16-45 (203)
401 3cr8_A Sulfate adenylyltranfer 96.5 0.00041 1.4E-08 83.6 -0.5 42 889-932 365-408 (552)
402 3bgw_A DNAB-like replicative h 96.4 0.019 6.4E-07 67.5 13.4 39 183-221 183-221 (444)
403 1m7g_A Adenylylsulfate kinase; 96.4 0.00071 2.4E-08 71.1 0.9 41 194-237 22-64 (211)
404 2qby_A CDC6 homolog 1, cell di 96.3 0.0014 4.6E-08 75.1 2.9 29 195-223 43-71 (386)
405 3lxx_A GTPase IMAP family memb 96.3 0.015 5.1E-07 62.1 10.6 42 1023-1064 111-154 (239)
406 1m2o_B GTP-binding protein SAR 96.3 0.0026 9E-08 65.3 4.5 34 186-220 13-46 (190)
407 2q6t_A DNAB replication FORK h 96.3 0.0086 2.9E-07 70.4 9.4 34 882-915 189-222 (444)
408 2w58_A DNAI, primosome compone 96.3 0.0032 1.1E-07 65.3 5.1 25 198-222 55-79 (202)
409 1l8q_A Chromosomal replication 96.2 0.0051 1.8E-07 69.0 7.1 47 358-405 96-143 (324)
410 1np6_A Molybdopterin-guanine d 96.2 0.0019 6.4E-08 65.8 3.1 40 198-237 7-46 (174)
411 1m2o_B GTP-binding protein SAR 96.2 0.0032 1.1E-07 64.7 4.9 49 881-930 12-66 (190)
412 2qor_A Guanylate kinase; phosp 96.2 0.0015 5.2E-08 68.2 2.4 29 194-222 9-37 (204)
413 3llm_A ATP-dependent RNA helic 96.2 0.0012 4.3E-08 70.5 1.7 25 890-914 73-97 (235)
414 3m6a_A ATP-dependent protease 96.2 0.00062 2.1E-08 82.3 -1.0 49 880-931 96-144 (543)
415 4eaq_A DTMP kinase, thymidylat 96.2 0.0021 7.1E-08 68.6 3.2 35 883-917 13-50 (229)
416 1y63_A LMAJ004144AAA protein; 96.2 0.0022 7.4E-08 65.8 3.1 32 189-220 2-33 (184)
417 1cke_A CK, MSSA, protein (cyti 96.2 0.0018 6.1E-08 68.5 2.5 37 197-233 5-41 (227)
418 1f6b_A SAR1; gtpases, N-termin 96.1 0.0013 4.4E-08 68.3 1.2 35 185-220 14-48 (198)
419 3h4m_A Proteasome-activating n 96.1 0.0087 3E-07 65.6 7.7 27 195-221 49-75 (285)
420 1f6b_A SAR1; gtpases, N-termin 96.1 0.0022 7.6E-08 66.4 2.7 35 881-916 14-48 (198)
421 2qag_A Septin-2, protein NEDD5 96.0 0.00077 2.6E-08 77.2 -1.1 76 184-268 30-105 (361)
422 1u94_A RECA protein, recombina 96.0 0.0092 3.1E-07 67.9 7.8 34 882-915 50-85 (356)
423 2yvu_A Probable adenylyl-sulfa 96.0 0.0022 7.4E-08 65.8 2.2 29 195-223 11-39 (186)
424 1mky_A Probable GTP-binding pr 96.0 0.0038 1.3E-07 73.4 4.6 152 895-1054 182-354 (439)
425 2b8t_A Thymidine kinase; deoxy 95.9 0.011 3.8E-07 62.6 7.3 53 360-418 89-150 (223)
426 3ice_A Transcription terminati 95.9 0.0023 7.9E-08 72.5 2.1 33 189-221 166-198 (422)
427 2pez_A Bifunctional 3'-phospho 95.9 0.003 1E-07 64.3 2.6 26 891-916 3-28 (179)
428 2ohf_A Protein OLA1, GTP-bindi 95.9 0.0036 1.2E-07 71.9 3.5 31 190-220 15-45 (396)
429 2ffh_A Protein (FFH); SRP54, s 95.8 0.0026 9E-08 73.9 2.2 44 188-236 91-134 (425)
430 1jjv_A Dephospho-COA kinase; P 95.8 0.0039 1.3E-07 65.0 3.3 69 344-418 61-131 (206)
431 1cke_A CK, MSSA, protein (cyti 95.8 0.0032 1.1E-07 66.6 2.7 57 893-949 5-74 (227)
432 2i1q_A DNA repair and recombin 95.8 0.027 9.3E-07 63.1 10.4 139 883-1064 87-257 (322)
433 1l8q_A Chromosomal replication 95.8 0.012 4.2E-07 65.9 7.5 45 1022-1066 96-141 (324)
434 3bgw_A DNAB-like replicative h 95.8 0.011 3.9E-07 69.3 7.5 34 882-915 186-219 (444)
435 2ga8_A Hypothetical 39.9 kDa p 95.8 0.001 3.4E-08 75.1 -1.4 37 186-222 11-49 (359)
436 1y63_A LMAJ004144AAA protein; 95.8 0.0041 1.4E-07 63.7 3.2 32 885-916 2-33 (184)
437 3lxx_A GTPase IMAP family memb 95.8 0.031 1.1E-06 59.6 10.2 25 199-223 31-55 (239)
438 3h4m_A Proteasome-activating n 95.8 0.01 3.6E-07 65.0 6.6 28 890-917 48-75 (285)
439 2qag_A Septin-2, protein NEDD5 95.7 0.00075 2.6E-08 77.2 -2.9 32 879-916 29-60 (361)
440 2qor_A Guanylate kinase; phosp 95.7 0.0037 1.3E-07 65.2 2.6 28 890-917 9-36 (204)
441 1q57_A DNA primase/helicase; d 95.7 0.1 3.5E-06 62.3 15.5 38 184-221 229-266 (503)
442 3llm_A ATP-dependent RNA helic 95.7 0.0027 9.2E-08 67.9 1.4 66 344-412 162-228 (235)
443 1ega_A Protein (GTP-binding pr 95.7 0.004 1.4E-07 69.3 2.7 44 343-393 101-147 (301)
444 2p5t_B PEZT; postsegregational 95.7 0.0027 9.2E-08 68.8 1.3 41 193-238 28-68 (253)
445 2wji_A Ferrous iron transport 95.6 0.0098 3.3E-07 59.4 5.3 23 895-917 5-27 (165)
446 1j8m_F SRP54, signal recogniti 95.6 0.0019 6.6E-08 71.7 -0.2 44 188-235 89-133 (297)
447 2if2_A Dephospho-COA kinase; a 95.6 0.005 1.7E-07 64.0 3.0 21 199-219 3-23 (204)
448 2www_A Methylmalonic aciduria 95.5 0.0046 1.6E-07 70.3 2.6 26 891-916 72-97 (349)
449 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.1 3.5E-06 58.4 13.6 28 194-221 42-69 (322)
450 1xp8_A RECA protein, recombina 95.5 0.075 2.6E-06 60.6 12.5 30 192-221 69-98 (366)
451 2wjg_A FEOB, ferrous iron tran 95.5 0.012 4.1E-07 59.7 5.4 22 895-916 9-30 (188)
452 3cmw_A Protein RECA, recombina 95.5 0.027 9.1E-07 75.5 9.8 30 193-222 728-757 (1706)
453 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0024 8.3E-08 72.0 -0.0 36 881-916 10-47 (359)
454 3t61_A Gluconokinase; PSI-biol 95.5 0.0043 1.5E-07 64.4 1.9 25 197-221 18-42 (202)
455 3cm0_A Adenylate kinase; ATP-b 95.5 0.0068 2.3E-07 61.8 3.3 27 195-221 2-28 (186)
456 2wji_A Ferrous iron transport 95.4 0.0074 2.5E-07 60.3 3.5 23 199-221 5-27 (165)
457 2if2_A Dephospho-COA kinase; a 95.4 0.0051 1.8E-07 63.9 2.3 21 895-915 3-23 (204)
458 2wjg_A FEOB, ferrous iron tran 95.4 0.0073 2.5E-07 61.4 3.4 22 199-220 9-30 (188)
459 3kb2_A SPBC2 prophage-derived 95.4 0.0056 1.9E-07 61.4 2.4 24 199-222 3-26 (173)
460 3d8b_A Fidgetin-like protein 1 95.4 0.073 2.5E-06 60.5 11.9 27 195-221 115-141 (357)
461 1qhx_A CPT, protein (chloramph 95.3 0.0069 2.4E-07 61.3 2.9 26 197-222 3-28 (178)
462 2yvu_A Probable adenylyl-sulfa 95.2 0.0081 2.8E-07 61.4 3.1 29 889-917 9-37 (186)
463 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.053 1.8E-06 58.2 9.7 28 195-222 37-64 (262)
464 2ohf_A Protein OLA1, GTP-bindi 95.2 0.0088 3E-07 68.7 3.5 43 888-930 17-68 (396)
465 1np6_A Molybdopterin-guanine d 95.2 0.0079 2.7E-07 61.2 2.8 38 894-931 7-45 (174)
466 1sxj_C Activator 1 40 kDa subu 95.2 0.0032 1.1E-07 71.3 -0.2 38 879-916 30-69 (340)
467 3d8b_A Fidgetin-like protein 1 95.2 0.06 2E-06 61.2 10.5 26 891-916 115-140 (357)
468 1sxj_C Activator 1 40 kDa subu 95.2 0.0024 8.3E-08 72.3 -1.2 40 184-223 31-72 (340)
469 3r20_A Cytidylate kinase; stru 95.1 0.0078 2.7E-07 64.2 2.5 24 198-221 10-33 (233)
470 2rhm_A Putative kinase; P-loop 95.1 0.01 3.5E-07 60.7 3.3 27 195-221 3-29 (193)
471 4b4t_L 26S protease subunit RP 95.0 0.068 2.3E-06 62.2 10.4 29 194-222 212-240 (437)
472 2v1u_A Cell division control p 95.0 0.029 9.9E-07 63.9 7.2 26 891-916 42-67 (387)
473 2b8t_A Thymidine kinase; deoxy 95.0 0.025 8.4E-07 59.9 6.0 52 1024-1080 89-149 (223)
474 1q3t_A Cytidylate kinase; nucl 95.0 0.0093 3.2E-07 63.7 2.7 28 194-221 13-40 (236)
475 3cmw_A Protein RECA, recombina 95.0 0.2 6.8E-06 67.2 15.7 37 185-221 369-407 (1706)
476 1kht_A Adenylate kinase; phosp 94.9 0.012 4.2E-07 60.0 3.4 26 197-222 3-28 (192)
477 2zej_A Dardarin, leucine-rich 94.9 0.012 4E-07 60.0 3.1 23 199-221 4-26 (184)
478 2ze6_A Isopentenyl transferase 94.9 0.01 3.5E-07 64.2 2.7 25 198-222 2-26 (253)
479 1gvn_B Zeta; postsegregational 94.8 0.014 4.7E-07 64.5 3.7 35 196-235 32-66 (287)
480 1q57_A DNA primase/helicase; d 94.8 0.18 6E-06 60.2 13.6 34 882-915 231-264 (503)
481 1m7g_A Adenylylsulfate kinase; 94.8 0.012 4.2E-07 61.5 3.0 41 888-930 20-62 (211)
482 2zej_A Dardarin, leucine-rich 94.8 0.014 4.6E-07 59.5 3.2 22 895-916 4-25 (184)
483 2v54_A DTMP kinase, thymidylat 94.7 0.016 5.4E-07 60.0 3.5 26 196-221 3-28 (204)
484 3t61_A Gluconokinase; PSI-biol 94.7 0.012 4.1E-07 61.0 2.7 24 893-916 18-41 (202)
485 3cm0_A Adenylate kinase; ATP-b 94.7 0.013 4.4E-07 59.7 2.8 25 891-915 2-26 (186)
486 3lw7_A Adenylate kinase relate 94.6 0.016 5.5E-07 57.9 3.2 19 199-217 3-21 (179)
487 2plr_A DTMP kinase, probable t 94.6 0.018 6.3E-07 59.7 3.7 28 196-223 3-30 (213)
488 1xjc_A MOBB protein homolog; s 94.6 0.014 4.8E-07 58.9 2.6 26 198-223 5-30 (169)
489 3trf_A Shikimate kinase, SK; a 94.5 0.018 6E-07 58.7 3.4 26 196-221 4-29 (185)
490 2jaq_A Deoxyguanosine kinase; 94.5 0.013 4.6E-07 60.4 2.5 24 199-222 2-25 (205)
491 1ex7_A Guanylate kinase; subst 94.5 0.015 5E-07 59.8 2.7 25 198-222 2-26 (186)
492 1ly1_A Polynucleotide kinase; 94.5 0.019 6.3E-07 58.0 3.5 22 198-219 3-24 (181)
493 1via_A Shikimate kinase; struc 94.4 0.014 4.7E-07 59.1 2.2 23 199-221 6-28 (175)
494 3iij_A Coilin-interacting nucl 94.4 0.017 5.9E-07 58.6 2.9 26 196-221 10-35 (180)
495 1j8m_F SRP54, signal recogniti 94.4 0.012 4.1E-07 65.3 1.8 46 884-932 89-135 (297)
496 2qp9_X Vacuolar protein sortin 94.4 0.16 5.6E-06 57.6 11.3 27 195-221 82-108 (355)
497 2j9r_A Thymidine kinase; TK1, 94.3 0.12 4.2E-06 53.9 9.3 53 360-418 101-162 (214)
498 2c95_A Adenylate kinase 1; tra 94.3 0.02 6.8E-07 58.7 3.2 27 195-221 7-33 (196)
499 1xx6_A Thymidine kinase; NESG, 94.3 0.067 2.3E-06 55.1 7.2 53 360-418 81-142 (191)
500 2wwf_A Thymidilate kinase, put 94.3 0.021 7.3E-07 59.3 3.5 27 195-221 8-34 (212)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.8e-75 Score=773.97 Aligned_cols=216 Identities=25% Similarity=0.362 Sum_probs=181.7
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|+|+||+|.|+.. ....+|+||||+|+|||++||||+||||||||+++|+|..+ +.+|+|.|||.+
T Consensus 1075 g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEE
T ss_pred CeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEE
Confidence 468999999887532 12459999999999999999999999999999999999876 458999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~ 1002 (1119)
+.. ..+|+.++||||+|.++.. |++||+.|+.. +.+ ..++.++++++..++.+. .|..+|..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~----~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSS----VTMAQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTT----SCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCC----CCHHHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 754 5678899999999999875 99999977521 111 234558889998887554 34455544
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+|+|+++ ....||+|++|+
T Consensus 1215 -G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld- 1289 (1321)
T 4f4c_A 1215 -GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS- 1289 (1321)
T ss_dssp -SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-
T ss_pred -CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999875 5899999999975 677899999997
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
+|+|++.|+..
T Consensus 1290 ~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1290 NGTIIEKGTHT 1300 (1321)
T ss_dssp SSSEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 58999999854
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.3e-68 Score=701.91 Aligned_cols=216 Identities=24% Similarity=0.341 Sum_probs=173.5
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|+++.++.. +...+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSC
T ss_pred CcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEE
Confidence 468999998876421 12358999999999999999999999999999999999876 458999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~ 1002 (1119)
+.. ..+++.+||+||++.+++ .||+||+.++...+ ... ++.++++++..++.+. .|..+|..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~----~~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVS----YEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCC----HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCC----HHHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 753 456778999999997764 69999998753211 111 2234555666555433 33444543
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+.+||||||||++|||||+++|+||+|||||||||+.+++.|++.|++.. +|+|||+|+||++ ....||++++|+
T Consensus 1169 -G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~--~i~~~dri~vl~- 1243 (1284)
T 3g5u_A 1169 -GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS--TIQNADLIVVIQ- 1243 (1284)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT--GGGSCSEEEEEE-
T ss_pred -CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH--HHHcCCEEEEEE-
Confidence 45799999999999999999999999999999999999999999998864 5999999999986 346799999997
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
+|++++.|+..
T Consensus 1244 ~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1244 NGKVKEHGTHQ 1254 (1284)
T ss_dssp TBEEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 48999999854
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.3e-58 Score=565.35 Aligned_cols=188 Identities=27% Similarity=0.322 Sum_probs=157.6
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+ .+.+||++|++...+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 6899999999999999999999999999999999865 34677765 24599999998877889999988
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
....... ....+.+.++++.+++.+..++.+ .+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 439 ~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 439 SKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 6531100 011245788999999988888774 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCCCC
Q 001228 1042 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGH 1094 (1119)
Q Consensus 1042 ~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~~~ 1094 (1119)
+..++++|++++ +.|.|||++|||++ .+...||++++|.. .|++...|+...
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 999999999986 46999999999975 46678999999973 266777888754
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-58 Score=556.68 Aligned_cols=188 Identities=27% Similarity=0.328 Sum_probs=156.5
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+ ...+||++|++...+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 6899999999999999999999999999999999865 34687764 23599999998877889998887
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
........ ...+.+.++++.+++.+..++.+ ..|||||||||+|||+|+.+|+||||||||+|||+.+
T Consensus 369 ~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 369 SKIDASKL-------NSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccCC-------CHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 64311110 01235678899999987777764 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCCCC
Q 001228 1042 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGH 1094 (1119)
Q Consensus 1042 ~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~~~ 1094 (1119)
+..|+++|++++ +.|.|||++|||++ .+...||++++|.+ .|+++..|+..+
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 999999999986 45999999999975 56678999999974 267777888754
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.7e-57 Score=542.93 Aligned_cols=199 Identities=23% Similarity=0.251 Sum_probs=159.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+++ +.++|++|+....+..||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---------CCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---------eeeEeechhcccccCCCHHHHH
Confidence 5778899999999999999999999999999999876 3579998765 3489999998777789999999
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
.+.... .... ....++++++.+++.+..++.+ .+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 352 ~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENASKD--ALST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHCSS--TTCT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHhhhh--ccch----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 763211 1001 1234678899999988888774 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecC-cEEEEecCCCCChHHHHHHh
Q 001228 1042 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG-GRVIYAGPLGHESHKLIEYF 1103 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~g-G~v~~~g~~~~~~~~l~~~f 1103 (1119)
+..|+++|+++++ .|.|||+||||++ .+...||++++|..+ |.....++.......+.+++
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~ 483 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFL 483 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHH
Confidence 9999999999974 5899999999975 566789999999741 34444555443333444554
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.1e-55 Score=550.50 Aligned_cols=184 Identities=22% Similarity=0.286 Sum_probs=149.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCC-CCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 262 (1119)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. .+++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 3333211 12378999974 67888999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCccCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~r 341 (1119)
.|++.+ ...+ . ...++.+++.+||. +..+..+++
T Consensus 514 ~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--hhcC--H-------------------------------------HHHHHHHHHHcCCChhhhcCCccc----
Confidence 999965 1110 0 01245688999995 678888887
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ .+.|+|++.| ...++.++||+|++|++|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSH-dl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISH-DSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECS-CHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEEC-CHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999999999987 3677777655 4568889999999999999
Q ss_pred EE-EEcChhHHH
Q 001228 422 IV-YQGPRDNVL 432 (1119)
Q Consensus 422 iv-~~G~~~~~~ 432 (1119)
++ +.|+++++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 96 789887654
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.4e-55 Score=550.66 Aligned_cols=215 Identities=23% Similarity=0.269 Sum_probs=139.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHH---------------------HHHhcCcCCCC----CcceEEEECCcc
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM---------------------LALAGKLGKDL----RASGKITYCGHE 237 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~LaG~~~~~~----~~~G~I~~~G~~ 237 (1119)
..++|+|||++|++|++++|+||||||||||| +.+.|...|+. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34589999999999999999999999999998 77777776642 125677777765
Q ss_pred CCCCcccceEEEeccCCCC-------------------CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCCh
Q 001228 238 LNEFVPQRTCAYISQHDLH-------------------HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298 (1119)
Q Consensus 238 ~~~~~~~~~~~yv~Q~d~~-------------------~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1119)
.... +++.++||+|...+ ++.+||+||+.|....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 4332 23445666654332 4578999999874321100 000000
Q ss_pred hHHHHHHHHHhhccchhhHHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhcCCc--EeEEeCCCCCCCH
Q 001228 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDS 375 (1119)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~--illlDEPtsgLDs 375 (1119)
.+... .+... .-.+++.+||.+. .|+.+++ |||||||||+||+||+.+|+ +|||||||+|||+
T Consensus 172 -~~~~~-------~~~~~-~~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -ARLIL-------REIRD-RLGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHH-HHHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -HHHHH-------HHHHH-HHHHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00000 00011 1235888999865 6888887 99999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE------cCCeEEEEcChhHHH
Q 001228 376 STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 376 ~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL------~~G~iv~~G~~~~~~ 432 (1119)
.++.++.+.|+++++ .|.|+|++.|... ....||+|++| ++|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEEECCCHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCHH--HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999999999999975 4788888777643 45679999999 899999999988763
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-55 Score=534.61 Aligned_cols=189 Identities=21% Similarity=0.210 Sum_probs=154.7
Q ss_pred eeeccceeeeeCC-----cEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCC
Q 001228 881 QLLHSVSGVFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 881 ~vL~~vs~~i~~G-----e~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~ 955 (1119)
.+++++||++++| |++||+||||||||||+++|+|...+ .+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------cc----CCcEEEecccccccCCc
Confidence 4788899988888 78999999999999999999998663 35541 11 23589999997776778
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+|++... ++.. .. ....++++++.+++.+..++.+ .+|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~--~~~~--~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRGQ--FL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSST--TT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhcc--cc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 2211 11 1234678999999998888874 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCCCC
Q 001228 1036 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGH 1094 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~~~ 1094 (1119)
|||+.++..++++|+++. +.|.|||++|||++ .+...||++++|.. .|+++..|++.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPES 556 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHH
Confidence 999999999999999986 45999999999975 56678999999974 278889998765
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.2e-42 Score=429.46 Aligned_cols=196 Identities=27% Similarity=0.382 Sum_probs=145.4
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHH---------HhHcCCCC--C--CeeE------EEEEECCccCChhh-----
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--G--GYIE------GDIKISGYPKNQET----- 937 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl---------~~L~g~~~--~--g~~~------G~i~i~g~~~~~~~----- 937 (1119)
.|+|||++|++|++++|+|+||||||||+ +.+.+... + .... +-+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 33333211 1 1122 33555554431100
Q ss_pred ---------------------------------------hcceEEEEccCCCCCC-------------------------
Q 001228 938 ---------------------------------------FARVSGYCEQNDIHSP------------------------- 953 (1119)
Q Consensus 938 ---------------------------------------~~~~~gy~~q~~~~~~------------------------- 953 (1119)
..+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012466766655544
Q ss_pred -------CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-ccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001228 954 -------YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1119)
Q Consensus 954 -------~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 1025 (1119)
.+||.|++.|.... .....+.++|+.++|.... ++. +.+|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~-----~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQP-----ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCC-----STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCC-----ccCCCHHHHHHHHHHHHHhhCC
Confidence 36788887764311 1223467889999996532 333 4579999999999999999876
Q ss_pred ---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCCC
Q 001228 1026 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1026 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~~ 1093 (1119)
+||||||||+|||+.+.+.|++.|++++++|.|||+|+|++ +....||++++|. ++|+|++.|+..
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 79999999999999999999999999998899999999996 4567799999993 579999999864
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.1e-42 Score=391.17 Aligned_cols=219 Identities=24% Similarity=0.307 Sum_probs=187.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.. .+...+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 47888888765421 123569999999999999999999999999999999999876 4589999999986
Q ss_pred Ch---h---hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 934 NQ---E---TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 934 ~~---~---~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
.. . ..++.+||++|++.+++.+||+||+.|+...+. ....+..+.+.++++.++|.+..++. +.+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSY-----PSNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCC-----TTTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCC-----hhhC
Confidence 43 1 235679999999999999999999999876542 34556667899999999999888877 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
||||||||+|||||+.+|+||||||||||||+.++..|+++|+++.+ .|.|||+|||+++ .+...||++++|.+ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999975 4999999999975 46678999999975 899
Q ss_pred EEecCCC
Q 001228 1087 IYAGPLG 1093 (1119)
Q Consensus 1087 ~~~g~~~ 1093 (1119)
++.|+..
T Consensus 243 v~~g~~~ 249 (366)
T 3tui_C 243 IEQDTVS 249 (366)
T ss_dssp EECCBHH
T ss_pred EEEcCHH
Confidence 9999853
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8.4e-42 Score=370.85 Aligned_cols=220 Identities=24% Similarity=0.366 Sum_probs=181.8
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++.. .....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 4667777655311 112469999999999999999999999999999999999876 45899999998764
Q ss_pred hh---h----hcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCC
Q 001228 935 QE---T----FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSG 1006 (1119)
Q Consensus 935 ~~---~----~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~ 1006 (1119)
.. . .++.+||++|++.+++.+||+||+.++...+........+..+.+.++++.+++.+. .++. +.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 31 1 134599999999999999999999997654422233445556778899999999764 3655 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ +...||++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999974 5678999999975 89
Q ss_pred EEEecCCC
Q 001228 1086 VIYAGPLG 1093 (1119)
Q Consensus 1086 v~~~g~~~ 1093 (1119)
++..++..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 99888764
No 12
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=3.2e-41 Score=419.75 Aligned_cols=196 Identities=29% Similarity=0.371 Sum_probs=149.0
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHc-C-C--------CCCC---eeEE------EEEECCccCChh------
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA-G-R--------KTGG---YIEG------DIKISGYPKNQE------ 936 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~-g-~--------~~~g---~~~G------~i~i~g~~~~~~------ 936 (1119)
+|+||||+|++||++||+|+||||||||+++|+ | . ...| .+.| .|.++|.++...
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999864 2 0 1122 2334 588888775210
Q ss_pred ----------------hhcceEEEEccCCCCC----------------------C-------------------------
Q 001228 937 ----------------TFARVSGYCEQNDIHS----------------------P------------------------- 953 (1119)
Q Consensus 937 ----------------~~~~~~gy~~q~~~~~----------------------~------------------------- 953 (1119)
...+.+||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 0123457877753221 0
Q ss_pred -------CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001228 954 -------YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1119)
Q Consensus 954 -------~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 1025 (1119)
.+|+.|++.|... .. ....+.++++.++|.. ..++. +.+|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~---~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IP---KIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CH---HHHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------ch---hHHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3577777765321 11 1123568899999986 45555 3479999999999999999875
Q ss_pred ---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCCC
Q 001228 1026 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1026 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~~ 1093 (1119)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ....||++++|. ++|++++.|+..
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999964 457899999994 468999988753
No 13
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.1e-41 Score=377.17 Aligned_cols=217 Identities=25% Similarity=0.373 Sum_probs=183.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 367778776542 12359999999999999999999999999999999999876 4589999999887
Q ss_pred C--h---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 934 N--Q---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 934 ~--~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
. . ..+++.+||++|++. .++.+||+||+.|+.... ....++..+.++++++.++|.++.++.+ .+|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 2 235678999999973 445789999999986543 2344556677899999999998888874 479
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++. ++|+|||++||+++ .+...||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999986 46678999999975 899
Q ss_pred EEecCCCC
Q 001228 1087 IYAGPLGH 1094 (1119)
Q Consensus 1087 ~~~g~~~~ 1094 (1119)
++.|+..+
T Consensus 223 ~~~g~~~~ 230 (275)
T 3gfo_A 223 ILQGNPKE 230 (275)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998653
No 14
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.7e-41 Score=383.37 Aligned_cols=207 Identities=25% Similarity=0.322 Sum_probs=182.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc------cceEEEeccCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLH 256 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 256 (1119)
..++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 357999999999999999999999999999999999999997 9999999999876532 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||+||+.|+.+..+... . +....++++|+.+||++..+..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------~------------------------~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------D------------------------EVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------H------------------------HHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcCChh
Confidence 999999999999765433210 0 012246778999999999999988
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.+..|.|+|++.|+ ..++.++||+|++
T Consensus 163 ~-----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd-l~~~~~~aDrv~v 236 (366)
T 3tui_C 163 N-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAV 236 (366)
T ss_dssp T-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHHHhCCEEEE
Confidence 7 999999999999999999999999999999999999999999999987778888887765 4588899999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001228 417 LSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1119)
|++|+++++|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999874
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.3e-41 Score=372.45 Aligned_cols=213 Identities=25% Similarity=0.352 Sum_probs=180.9
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 25 l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~ 89 (263)
T 2olj_A 25 IDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLK 89 (263)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESS
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 6777777544 33569999999999999999999999999999999999876 45899999998763
Q ss_pred -----hhhhcceEEEEccCCCCCCCCCHHHHHHHHH-HhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCC
Q 001228 935 -----QETFARVSGYCEQNDIHSPYVTVYESLLYSA-WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 935 -----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 1008 (1119)
...+++.+||++|++.+++.+||+||+.|+. ..+ ........+.++++++.++|.+..++.+ .+||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 161 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLS 161 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSC
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCC
Confidence 1234567999999999999999999999864 222 1223344567889999999988877764 4799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
||||||++|||||+.+|+||||||||+|||+.+++.+++.|+++.++|+|||++||+++ .+...||++++|++ |++++
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 239 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIE 239 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 45668999999975 79998
Q ss_pred ecCC
Q 001228 1089 AGPL 1092 (1119)
Q Consensus 1089 ~g~~ 1092 (1119)
.|+.
T Consensus 240 ~g~~ 243 (263)
T 2olj_A 240 EGKP 243 (263)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8874
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.5e-41 Score=364.54 Aligned_cols=211 Identities=23% Similarity=0.311 Sum_probs=179.0
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~y-------------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVI-------------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEeEEEEE-------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 5667766543 33569999999999999999999999999999999999876 45899999998764
Q ss_pred hh------hhc-ceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 935 QE------TFA-RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 935 ~~------~~~-~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
.. .++ +.+||++|++.+++.+||+||+.++...+. .......+.++++++.+++.+..++.+ .+|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YEL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 21 122 569999999999999999999998765432 223344567889999999998887764 479
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
|||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ....||++++|.+ |+++
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~~-G~i~ 218 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMKD-GKVV 218 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999964 3478999999975 8999
Q ss_pred EecC
Q 001228 1088 YAGP 1091 (1119)
Q Consensus 1088 ~~g~ 1091 (1119)
+.|+
T Consensus 219 ~~g~ 222 (224)
T 2pcj_A 219 GEIT 222 (224)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8875
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.9e-41 Score=388.34 Aligned_cols=205 Identities=27% Similarity=0.366 Sum_probs=180.9
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~ 955 (1119)
|++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.++|.+
T Consensus 13 yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~l 90 (381)
T 3rlf_A 13 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 90 (381)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTS
T ss_pred ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCC
Confidence 345679999999999999999999999999999999999876 4589999999886432 2346799999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+||+.|+...+. ...++.++.++++++.++|.++.++.+ .+|||||||||+|||||+.+|+|||||||||
T Consensus 91 tV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 91 SVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp CHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 99999999876542 345566678999999999999888874 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+||+..+..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+..
T Consensus 163 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 219 (381)
T 3rlf_A 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (381)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 99999999999999999755 999999999975 57788999999975 8999999754
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-41 Score=372.76 Aligned_cols=214 Identities=21% Similarity=0.274 Sum_probs=181.0
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 7 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcc
Confidence 5677776543 33569999999999999999999999999999999999876 45899999998764
Q ss_pred h----------------hhhcceEEEEccCCCCCCCCCHHHHHHHHH-HhhcCCCccHHHHHHHHHHHHHHcCCCCc-cc
Q 001228 935 Q----------------ETFARVSGYCEQNDIHSPYVTVYESLLYSA-WLRLSSDVDTKKRKMFVDEVMELVELKSL-ND 996 (1119)
Q Consensus 935 ~----------------~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~ 996 (1119)
. ..+++.+||++|++.+++.+||+||+.++. ..+ ........+.++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 124567999999999999999999999864 322 12233445678899999999887 77
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhce
Q 001228 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076 (1119)
Q Consensus 997 ~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1076 (1119)
+.+ .+||||||||++|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||+
T Consensus 149 ~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 764 479999999999999999999999999999999999999999999999877999999999975 46668999
Q ss_pred EeEEecCcEEEEecCCC
Q 001228 1077 LLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1077 ~l~l~~gG~v~~~g~~~ 1093 (1119)
+++|.+ |++++.|+..
T Consensus 223 v~~l~~-G~i~~~g~~~ 238 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDPE 238 (262)
T ss_dssp EEEEET-TEEEEEECHH
T ss_pred EEEEEC-CEEEEeCCHH
Confidence 999975 8999888753
No 19
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.3e-41 Score=387.27 Aligned_cols=205 Identities=26% Similarity=0.412 Sum_probs=177.7
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC----Ch-hhhcceEEEEccCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK----NQ-ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~----~~-~~~~~~~gy~~q~~~~ 951 (1119)
|++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++ .. ...++.+||++|++.+
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l 91 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVL 91 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCCEEEEeCCCcC
Confidence 345679999999999999999999999999999999999876 4589999999875 22 2345779999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+|.+||+||+.|+...+. ...++.++.++++++.++|.++.++.+ .+|||||||||+|||||+.+|+|||||
T Consensus 92 ~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 92 FPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp CTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999999764432 233455667899999999999888874 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||||+..+..+++.|+++. +.|.|||++|||++ +....||++++|++ |+++..|+..
T Consensus 164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 224 (359)
T 3fvq_A 164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPH 224 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHH
Confidence 9999999999999999888764 56999999999975 57778999999975 8999999864
No 20
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-41 Score=368.74 Aligned_cols=215 Identities=21% Similarity=0.311 Sum_probs=181.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 15 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 36777776544 33569999999999999999999999999999999999876 4589999999876
Q ss_pred Ch--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
.. ...++.+||++|++.+++.+||+||+.+...++. ....+..+.++++++.++|.+..++.+ .+|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998754432 223334456889999999998887764 4799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
|||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+...||++++|.+ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999974 35556999999975 78998887
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 230 ~~ 231 (256)
T 1vpl_A 230 VE 231 (256)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 21
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=8.5e-41 Score=380.46 Aligned_cols=207 Identities=22% Similarity=0.339 Sum_probs=179.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC----CCCc-ccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL----NEFV-PQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~----~~~~-~~~~~~yv~Q~d~~~~ 258 (1119)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++ .... .++.+|||+|++.++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 56999999999999999999999999999999999999997 99999999987 2222 2467999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.+||+||+.|+.+..+... . +....++++++.+||++..|..+++
T Consensus 94 ~ltV~eni~~~l~~~~~~~--------------------~--------------~~~~~v~~~l~~~gL~~~~~r~~~~- 138 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT--------------------A--------------QERQRIEAMLELTGISELAGRYPHE- 138 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS--------------------H--------------HHHHHHHHHHHHHTCGGGTTSCGGG-
T ss_pred CCCHHHHHHHHHHHcCCCh--------------------H--------------HHHHHHHHHHHHcCCchHhcCChhh-
Confidence 9999999999765432110 0 0122467789999999999999987
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+..|.|+|+++| ...++..+||+|++|+
T Consensus 139 ----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTH-d~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 139 ----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH-DREEALQYADRIAVMK 213 (359)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECC-CHHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHHCCEEEEEE
Confidence 99999999999999999999999999999999999999999888887767788777665 4568999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001228 419 EGQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1119)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998753
No 22
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.3e-40 Score=415.47 Aligned_cols=106 Identities=27% Similarity=0.389 Sum_probs=92.8
Q ss_pred HHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 001228 980 MFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055 (1119)
Q Consensus 980 ~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~---p~illLDEPtsgLD~~~~~~i~~~l~~~~~~ 1055 (1119)
+.+.++++.++|... .++. +..|||||||||+||++|+.+ |+||||||||+|||+.+.+.|+++|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 357889999999764 3444 357999999999999999996 7999999999999999999999999999888
Q ss_pred CCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCC
Q 001228 1056 GRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPL 1092 (1119)
Q Consensus 1056 g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~ 1092 (1119)
|.|||+|+|+++ ....||++++|. ++|++++.|+.
T Consensus 783 G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 999999999964 447899999995 46899998874
No 23
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.6e-41 Score=371.02 Aligned_cols=217 Identities=24% Similarity=0.287 Sum_probs=181.0
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 8 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~ 72 (257)
T 1g6h_A 8 LRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDIT 72 (257)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEeeeEEEE-------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 6777776544 33569999999999999999999999999999999999876 45899999998764
Q ss_pred h----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHh-hcCC---------CccHHHHHHHHHHHHHHcCCCCccccccC
Q 001228 935 Q----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWL-RLSS---------DVDTKKRKMFVDEVMELVELKSLNDSMVG 1000 (1119)
Q Consensus 935 ~----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l-~~~~---------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 1000 (1119)
. ...++.+||++|++.+++.+||+||+.++... +... ........+.++++++.++|.+..++.+
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 151 (257)
T 1g6h_A 73 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA- 151 (257)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-
T ss_pred CCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-
Confidence 3 12345799999999888999999999886432 1110 0112334456889999999988887774
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
.+||||||||++|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|
T Consensus 152 ----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (257)
T 1g6h_A 152 ----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVM 226 (257)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999986 466789999999
Q ss_pred ecCcEEEEecCCC
Q 001228 1081 KRGGRVIYAGPLG 1093 (1119)
Q Consensus 1081 ~~gG~v~~~g~~~ 1093 (1119)
.+ |++++.|+..
T Consensus 227 ~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 227 FN-GQIIAEGRGE 238 (257)
T ss_dssp ET-TEEEEEEESH
T ss_pred EC-CEEEEEeCHH
Confidence 75 7899888753
No 24
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.3e-40 Score=381.39 Aligned_cols=207 Identities=25% Similarity=0.358 Sum_probs=182.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.+|||+|++.++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 56999999999999999999999999999999999999997 9999999999876544 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+... . +....++++++.+||++..+..+.+
T Consensus 93 ~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r~p~~----- 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------E------------------------VINQRVNQVAEVLQLAHLLDRKPKA----- 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTCCGGG-----
T ss_pred HHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCChhH-----
Confidence 999999866433110 0 1123467889999999999999887
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.+..|.|+|+++| ...++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC-CHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998766888777655 55689999999999999999
Q ss_pred EEEcChhHHHH
Q 001228 423 VYQGPRDNVLE 433 (1119)
Q Consensus 423 v~~G~~~~~~~ 433 (1119)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998753
No 25
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=9.9e-41 Score=380.29 Aligned_cols=216 Identities=26% Similarity=0.380 Sum_probs=184.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 467777765431 33469999999999999999999999999999999999876 4589999999886
Q ss_pred Ch-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 934 NQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
.. ...++.+||++|++.++|.+||+||+.|+...+. ....+.++.++++++.++|.++.++.+ .+||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 2345779999999999999999999999865542 234455677899999999999888874 47999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||++|||||+.+|+||||||||||||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999754 999999999975 56778999999975 89999887
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 230 ~~ 231 (355)
T 1z47_A 230 PE 231 (355)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 26
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.1e-40 Score=359.89 Aligned_cols=207 Identities=21% Similarity=0.240 Sum_probs=174.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 56999999999999999999999999999999999999997 9999999998866542 2359999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc-ccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMV 335 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~v 335 (1119)
++.+||+||+.|+......+.. ... +....+..+++.+||.+. .+..+
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------SGE------------------------ERRKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------CHH------------------------HHHHHHHHHHHHTTCCGGGTTCCG
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------CHH------------------------HHHHHHHHHHHHCCCChhhhhCCh
Confidence 9999999999987543211000 000 011235678899999875 48888
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
++ |||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++..|.|+|++.|++. +.++||+|+
T Consensus 144 ~~-----LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~ 216 (235)
T 3tif_A 144 NQ-----LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERII 216 (235)
T ss_dssp GG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEE
T ss_pred hh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEE
Confidence 77 99999999999999999999999999999999999999999999998766889988888764 458999999
Q ss_pred EEcCCeEEEEcChhHH
Q 001228 416 LLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (1119)
+|++|+++..++.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
No 27
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.2e-41 Score=371.46 Aligned_cols=224 Identities=24% Similarity=0.348 Sum_probs=187.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 46777777644 34579999999999999999999999999999999999876 3589999999886
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
.. ...++.++|++|++.+++.+||+||+.++..... .....+.++++++.+++.++.++.+ .+||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 43 3455679999999998889999999998754321 1223456889999999998888774 479999
Q ss_pred HHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1011 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1011 qrqrl~iA~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
||||++|||||+. +|+||||||||+|||+.++..+++.|++++++ |+|||++|||++ .+...||++++|.+
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999975 46678999999975
Q ss_pred cEEEEecCCCC--ChHHHHHHhh
Q 001228 1084 GRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1084 G~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
|++++.|+..+ ....+.++|.
T Consensus 224 G~i~~~g~~~~~~~~~~l~~~~~ 246 (266)
T 4g1u_C 224 GKLVACGTPEEVLNAETLTQWYQ 246 (266)
T ss_dssp TEEEEEECHHHHCCHHHHHHHCC
T ss_pred CEEEEEcCHHHHhCcHHHHHHhC
Confidence 89999998653 3455777776
No 28
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.9e-40 Score=379.45 Aligned_cols=205 Identities=26% Similarity=0.358 Sum_probs=178.2
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~ 955 (1119)
+++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.++|.+
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 90 (362)
T 2it1_A 13 FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHM 90 (362)
T ss_dssp SSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTS
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCC
Confidence 344579999999999999999999999999999999999876 4589999999886432 2346799999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+||+.|+...+. ....+.++.++++++.++|.++.++.+ .+|||||||||+|||||+.+|++||||||||
T Consensus 91 tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 91 TVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp CHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 99999999865432 234455667899999999999888874 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+..
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 219 (362)
T 2it1_A 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTPD 219 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999654 999999999975 56778999999975 8999988753
No 29
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.6e-40 Score=367.70 Aligned_cols=207 Identities=27% Similarity=0.348 Sum_probs=175.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-----cccceEEEeccCC-CCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHD-LHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~ 257 (1119)
..+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.+|||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999987 99999999987421 1245799999986 344
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
..+||+||+.|+....+... . +....++++++.+||++..+..+++
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPE----------D------------------------EIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred ccCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCCccc
Confidence 47899999999765432110 0 0122457789999999999999887
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++..|.|+|++.|.. .++.++||+|++|
T Consensus 144 -----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l 217 (275)
T 3gfo_A 144 -----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVM 217 (275)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999733478888887765 4788899999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|+++++|+++++..
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998754
No 30
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-40 Score=363.02 Aligned_cols=213 Identities=22% Similarity=0.338 Sum_probs=177.4
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 7 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 7 LEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDIT 71 (240)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 6777776544 33569999999999999999999999999999999999876 45899999998864
Q ss_pred h---hh-hcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcC-CCCccccccCCCCCCCCCH
Q 001228 935 Q---ET-FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ~---~~-~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~ 1009 (1119)
. .. .++.+||++|++.+++.+||+||+.++.... . ......+.++++++.++ +.+..++. +.+|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--~--~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LSg 142 (240)
T 1ji0_A 72 NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR--K--DKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSG 142 (240)
T ss_dssp TCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC--C--CSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCH
T ss_pred CCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC--C--CHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCCH
Confidence 3 12 2345999999999999999999998864211 1 11233456788999995 88777776 357999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|.+ |++++.
T Consensus 143 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~ 220 (240)
T 1ji0_A 143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLE 220 (240)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999974 46678999999975 889888
Q ss_pred cCCC
Q 001228 1090 GPLG 1093 (1119)
Q Consensus 1090 g~~~ 1093 (1119)
|+..
T Consensus 221 g~~~ 224 (240)
T 1ji0_A 221 GKAS 224 (240)
T ss_dssp EEHH
T ss_pred cCHH
Confidence 8753
No 31
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-40 Score=379.78 Aligned_cols=204 Identities=26% Similarity=0.368 Sum_probs=176.5
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~t 956 (1119)
++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.+++.+|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSC
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 34569999999999999999999999999999999999876 4589999999886432 23567999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|+||+.|+...+ .....+.++.++++++.++|.++.++.+ .+||||||||++|||||+.+|++|||||||||
T Consensus 92 v~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 92 VFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp HHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 999999875432 2233344567899999999998888874 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1037 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+..
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 219 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTPD 219 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999998754 999999999975 56778999999975 8999988754
No 32
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.7e-40 Score=376.68 Aligned_cols=206 Identities=26% Similarity=0.405 Sum_probs=180.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999987 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 105 ~eni~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~~gL~~~~~r~~~~----- 145 (355)
T 1z47_A 105 YDNVSFGLREKRVP----------KD------------------------EMDARVRELLRFMRLESYANRFPHE----- 145 (355)
T ss_dssp HHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhcCCccc-----
Confidence 99999976543211 00 0122467789999999999999887
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+++|+ ..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977667888777655 5688999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 225 ~~~g~~~~l~ 234 (355)
T 1z47_A 225 EQFGTPEEVY 234 (355)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 33
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.4e-40 Score=361.52 Aligned_cols=204 Identities=26% Similarity=0.353 Sum_probs=176.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999987 9999999999876543 35699999999888889
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.|+....... .....++.+++.+||.+..+..+++
T Consensus 101 tv~e~l~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 141 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGGS------------------------------------QDRQALQQVMAQTDCLALAQRDYRV--- 141 (266)
T ss_dssp BHHHHHHGGGTTSCST------------------------------------THHHHHHHHHHHTTCSTTTTSBGGG---
T ss_pred CHHHHHHhhhhhcCcH------------------------------------HHHHHHHHHHHHcCChhHhcCCccc---
Confidence 9999999865422100 0112356789999999999988877
Q ss_pred CCCChHHHHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~------~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
|||||||||+||+||+. +|++|||||||+|||+.++.++.+.|+++++..+.|+|++.| ...++.++||+|
T Consensus 142 --LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtH-dl~~~~~~~d~v 218 (266)
T 4g1u_C 142 --LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLH-DLNLAALYADRI 218 (266)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECS-CHHHHHHHCSEE
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEc-CHHHHHHhCCEE
Confidence 99999999999999999 999999999999999999999999999998765557666654 556888999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998874
No 34
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.7e-40 Score=380.33 Aligned_cols=204 Identities=26% Similarity=0.353 Sum_probs=177.3
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDI 950 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~~~ 950 (1119)
++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 34569999999999999999999999999999999999876 458999999987532 123567999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
++|.+||+||+.|+...+. ....+.++.++++++.++|.++.++.+ .+|||||||||+|||||+.+|+||||
T Consensus 92 l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999865542 234455667899999999998888874 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||||||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+..
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 225 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSPD 225 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEeCCHH
Confidence 9999999999999999999998754 999999999975 56778999999975 8999988754
No 35
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=2.3e-39 Score=404.78 Aligned_cols=196 Identities=26% Similarity=0.354 Sum_probs=146.0
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHc-C----CC-----CCCe---eEE------EEEECCccCChh------
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA-G----RK-----TGGY---IEG------DIKISGYPKNQE------ 936 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~-g----~~-----~~g~---~~G------~i~i~g~~~~~~------ 936 (1119)
+|+||||+|++|+++||+|+||||||||+++|. | .. ..|. +.| .|.+++.++...
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 599999999999999999999999999999963 2 11 1221 123 356676654210
Q ss_pred ----------------hhcceEEEEccCCCCC----------------------C-------------------------
Q 001228 937 ----------------TFARVSGYCEQNDIHS----------------------P------------------------- 953 (1119)
Q Consensus 937 ----------------~~~~~~gy~~q~~~~~----------------------~------------------------- 953 (1119)
...+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0123457777643221 1
Q ss_pred -------CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001228 954 -------YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1119)
Q Consensus 954 -------~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 1025 (1119)
.+|+.|++.|... .. ....+.++++.++|.. ..++. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~~---~~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------IA---GVHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------CH---HHHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------ch---HHHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 2566777665321 11 1123568899999976 44554 3579999999999999999875
Q ss_pred ---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCCC
Q 001228 1026 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1026 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~~ 1093 (1119)
+||||||||+|||+.+...|++.|++++++|.|||+++|+++ ....||++++|. ++|++++.|+..
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~~ 956 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTPE 956 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999964 457899999995 578999998754
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6.8e-40 Score=374.41 Aligned_cols=207 Identities=29% Similarity=0.377 Sum_probs=181.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.+|||+|++.+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999987 9999999999865443 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~~----- 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KD------------------------EVEKRVVEIARKLLIDNLLDRKPTQ----- 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HH------------------------HTTHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcCChhh-----
Confidence 99999976543210 00 0122467789999999999999887
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-QAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977667888887665 4688899999999999999
Q ss_pred EEEcChhHHHH
Q 001228 423 VYQGPRDNVLE 433 (1119)
Q Consensus 423 v~~G~~~~~~~ 433 (1119)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998743
No 37
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.1e-40 Score=374.18 Aligned_cols=206 Identities=28% Similarity=0.400 Sum_probs=180.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.+|||+|+..++|.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999987 9999999998865443 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~~----- 133 (362)
T 2it1_A 93 YKNIAFPLELRKAP----------RE------------------------EIDKKVREVAKMLHIDKLLNRYPWQ----- 133 (362)
T ss_dssp HHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHTTCTTCTTCCGGG-----
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhhCChhh-----
Confidence 99999976543211 00 0122467789999999999998887
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-QAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977667888887665 4688999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999874
No 38
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.6e-40 Score=380.04 Aligned_cols=200 Identities=27% Similarity=0.397 Sum_probs=175.1
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCCCC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 9999999999999999999999999999999999876 458999999987532 23457899999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+||+.|+...+ .....+..+.++++++.++|.++.++.+ .+|||||||||+|||||+.+|+|||||||||
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLLLDEP~s 169 (353)
T 1oxx_K 98 TAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFS 169 (353)
T ss_dssp CHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 9999999875433 2334455667899999999999888874 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+..
T Consensus 170 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999654 999999999975 56778999999975 8999988753
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3e-40 Score=379.08 Aligned_cols=214 Identities=22% Similarity=0.346 Sum_probs=176.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ ++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 5677766543 34569999999999999999999999999999999999876 45899999998864
Q ss_pred hh-hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 935 QE-TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 935 ~~-~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
.. ..++.+||++|++.+++.+||+||+.|+...+ .....+.++.++++++.++|.++.++.+ .+|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999875332 2234455667899999999998888874 579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999755 999999999975 56778999999975 899998875
Q ss_pred C
Q 001228 1093 G 1093 (1119)
Q Consensus 1093 ~ 1093 (1119)
.
T Consensus 227 ~ 227 (372)
T 1v43_A 227 T 227 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 40
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.3e-40 Score=352.74 Aligned_cols=200 Identities=23% Similarity=0.318 Sum_probs=172.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999987 9999999998865431 1569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||+||+.|+....+.. +. +....++.+++.+||++..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKP----------KK------------------------EAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999999865432210 00 011235678999999999999888
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++ ++||++++
T Consensus 140 ~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 E-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHER-ELA-ELTHRTLE 211 (224)
T ss_dssp G-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHH-TTSSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHH-HhCCEEEE
Confidence 7 9999999999999999999999999999999999999999999999775 78888887774 345 89999999
Q ss_pred EcCCeEEEEcCh
Q 001228 417 LSEGQIVYQGPR 428 (1119)
Q Consensus 417 L~~G~iv~~G~~ 428 (1119)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
No 41
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.9e-40 Score=375.25 Aligned_cols=201 Identities=24% Similarity=0.358 Sum_probs=178.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.+|||+|++.+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999987 9999999998865433 467999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.|+.+..+.. . . ..++++++.+||++..|..+++ ||
T Consensus 92 nl~~~~~~~~~~--------------------~----------------~-~~v~~~l~~~~L~~~~~~~~~~-----LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIK--------------------D----------------P-KRVLDTARDLKIEHLLDRNPLT-----LS 129 (348)
T ss_dssp HHHHHHHHHCCC--------------------C----------------H-HHHHHHHHHTTCTTTTTSCGGG-----SC
T ss_pred HHHHHHHHcCCC--------------------H----------------H-HHHHHHHHHcCCchHhcCChhh-----CC
Confidence 999975432110 0 0 2356789999999999999887 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987668888887765 468899999999999999999
Q ss_pred EcChhHHH
Q 001228 425 QGPRDNVL 432 (1119)
Q Consensus 425 ~G~~~~~~ 432 (1119)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999874
No 42
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.4e-39 Score=358.14 Aligned_cols=206 Identities=21% Similarity=0.331 Sum_probs=175.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--CCc---ccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFV---PQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 258 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999987 999999999874 111 1356999999999999
Q ss_pred CCCHHHHHHHhh-hhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 259 EMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
.+||+||+.|+. +..+.. .. +....++.+++.+||++..+..+++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP----------RE------------------------KAEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred CCCHHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCchHhcCChhh
Confidence 999999999853 222110 00 0012356789999999989988887
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. +.|+|++.|+ ..++.++||+|++|
T Consensus 160 -----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~~~~~~~d~v~~l 232 (263)
T 2olj_A 160 -----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE-MGFAREVGDRVLFM 232 (263)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCC-HHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999765 7787777665 45788899999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|++++.|+++++..
T Consensus 233 ~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 233 DGGYIIEEGKPEDLFD 248 (263)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988743
No 43
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.1e-40 Score=360.49 Aligned_cols=205 Identities=23% Similarity=0.305 Sum_probs=175.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC----------Cc------ccceE
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------FV------PQRTC 247 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----------~~------~~~~~ 247 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 46999999999999999999999999999999999999987 9999999998751 11 23569
Q ss_pred EEeccCCCCCCCCCHHHHHHHhh-hhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC
Q 001228 248 AYISQHDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (1119)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 326 (1119)
+||+|++.+++.+||+||+.|+. +..+.. .. +....++.+++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KH------------------------DARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------HH------------------------HHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC----------HH------------------------HHHHHHHHHHHHcC
Confidence 99999999999999999999853 222110 00 00123567899999
Q ss_pred Cccc-ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 001228 327 LDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (1119)
Q Consensus 327 L~~~-~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 405 (1119)
|++. .+..+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. |.|+|++.|+ ..
T Consensus 142 L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE-MG 214 (262)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC-HH
T ss_pred CCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HH
Confidence 9988 8888887 9999999999999999999999999999999999999999999999765 7888877665 45
Q ss_pred hHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001228 406 ETYDLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 406 ~~~~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 788899999999999999999998874
No 44
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.9e-40 Score=367.04 Aligned_cols=234 Identities=22% Similarity=0.362 Sum_probs=183.2
Q ss_pred cccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE
Q 001228 849 PFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI 928 (1119)
Q Consensus 849 ~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i 928 (1119)
+..+..++++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+
T Consensus 16 ~~~~~~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~ 80 (279)
T 2ihy_A 16 RGSHMLIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNL 80 (279)
T ss_dssp ---CEEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEE
T ss_pred CCCCceEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEE
Confidence 3333457888887654 23569999999999999999999999999999999999876 45899999
Q ss_pred CCccCC--h---hhhcceEEEEccCCCCC--CCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccC
Q 001228 929 SGYPKN--Q---ETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000 (1119)
Q Consensus 929 ~g~~~~--~---~~~~~~~gy~~q~~~~~--~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 1000 (1119)
+|.++. . ..+++.+||++|++.+. +.+||+||+.++...... ......+..+.++++++.++|.+..++.+
T Consensus 81 ~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~- 159 (279)
T 2ihy_A 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI- 159 (279)
T ss_dssp TTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-
T ss_pred CCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-
Confidence 998764 2 33456799999987543 356999999875321000 00112233456889999999988887774
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE--EEEecCccHHHHHhhceEe
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~d~~l 1078 (1119)
.+|||||||||+|||||+.+|+||||||||+|||+.+++.+++.|+++.++|+|| |++||+++ ++...||+++
T Consensus 160 ----~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~ 234 (279)
T 2ihy_A 160 ----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKIL 234 (279)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEE
Confidence 4799999999999999999999999999999999999999999999997669999 99999975 4557799999
Q ss_pred EEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1079 LLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1079 ~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
+|.+ |++++.|+..+ ....+.++|.
T Consensus 235 ~l~~-G~i~~~g~~~~~~~~~~~~~~~~ 261 (279)
T 2ihy_A 235 LLKD-GQSIQQGAVEDILTSENMSRFFQ 261 (279)
T ss_dssp EEET-TEEEEEEEHHHHCSHHHHHHHHT
T ss_pred EEEC-CEEEEECCHHHHhccHHHHHHhC
Confidence 9975 89998887542 2334556664
No 45
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.6e-39 Score=373.82 Aligned_cols=206 Identities=28% Similarity=0.366 Sum_probs=180.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC------Cc-ccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE------FV-PQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------~~-~~~~~~yv~Q~d~~ 256 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .. .++.+|||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999987 9999999988754 32 24679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
+|++||+||+.|+.+..+.. +. +....++++++.+||++..+..++
T Consensus 93 ~~~ltv~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~ 138 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVP----------RQ------------------------EIDQRVREVAELLGLTELLNRKPR 138 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCCCCHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCchHhcCCcc
Confidence 99999999999976543211 00 011246778999999999999988
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+++|+ ..++..++|+|++
T Consensus 139 ~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~v 212 (372)
T 1g29_1 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAV 212 (372)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEE
T ss_pred c-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEEE
Confidence 7 999999999999999999999999999999999999999999999977667888887765 4688999999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001228 417 LSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1119)
|++|+++..|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999999874
No 46
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.3e-40 Score=374.17 Aligned_cols=201 Identities=22% Similarity=0.285 Sum_probs=174.7
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~ 955 (1119)
|++. +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 11 y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 87 (348)
T 3d31_A 11 WKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87 (348)
T ss_dssp CSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTS
T ss_pred ECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCC
Confidence 3445 9999999999999999999999999999999999876 458999999988643 23456799999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+||+.|+...+... .. +.++++++.++|.++.++.+ .+||||||||++|||||+.+|++||||||||
T Consensus 88 tv~enl~~~~~~~~~~---~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 88 NVKKNLEFGMRMKKIK---DP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp CHHHHHHHHHHHHCCC---CH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred CHHHHHHHHHHHcCCC---HH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999986554221 11 56889999999999888874 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.++..+++.|+++.+ .|.|||++|||++ +....+|++++|++ |+++..|+..
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 213 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKPE 213 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999965 4999999999975 56778999999975 7899888753
No 47
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.3e-39 Score=373.76 Aligned_cols=206 Identities=24% Similarity=0.364 Sum_probs=173.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.+|||+|+..+++.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999987 9999999998865443 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 101 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~~----- 141 (372)
T 1v43_A 101 YENIAFPLKIKKFP----------KD------------------------EIDKRVRWAAELLQIEELLNRYPAQ----- 141 (372)
T ss_dssp HHHHHTTCC--CCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCTTT-----
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhcCChhh-----
Confidence 99999975432210 00 0112467789999999999998887
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977667888887665 4688899999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999999874
No 48
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-39 Score=355.37 Aligned_cols=206 Identities=25% Similarity=0.305 Sum_probs=176.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999875421 2357999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|.....+.. .. +....++.+++.+||++..++.+++
T Consensus 105 v~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~---- 146 (256)
T 1vpl_A 105 GIEYLRFVAGFYASS----------SS------------------------EIEEMVERATEIAGLGEKIKDRVST---- 146 (256)
T ss_dssp HHHHHHHHHHHHCCC----------HH------------------------HHHHHHHHHHHHHCCGGGGGSBGGG----
T ss_pred HHHHHHHHHHHcCCC----------hH------------------------HHHHHHHHHHHHCCCchHhcCChhh----
Confidence 999999865432110 00 0012356789999999999998887
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .+.|+|++.|++ .++..+||++++|++|+
T Consensus 147 -LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 147 -YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGT 223 (256)
T ss_dssp -CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999875 478888877654 57778899999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
No 49
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.7e-40 Score=358.55 Aligned_cols=219 Identities=26% Similarity=0.281 Sum_probs=171.8
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ ++..+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASI-------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 5667776544 335699999999999999999999999999999999997211257899999998764
Q ss_pred h---hhh-cceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCC-CCccccccCCCCCCC-CC
Q 001228 935 Q---ETF-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSLNDSMVGLPGVSG-LS 1008 (1119)
Q Consensus 935 ~---~~~-~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~-LS 1008 (1119)
. ... ++.++|++|++.+++.+||+||+.+.............+..+.+.++++.+++ .++.++.+ .+ ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 3 122 33589999999999999999999886532111111223344568899999999 47777763 46 99
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-hceEeEEecCcEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGGRVI 1087 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~gG~v~ 1087 (1119)
||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... ||++++|.+ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999767999999999976 34444 599999975 8999
Q ss_pred EecCCC
Q 001228 1088 YAGPLG 1093 (1119)
Q Consensus 1088 ~~g~~~ 1093 (1119)
+.|+..
T Consensus 224 ~~g~~~ 229 (250)
T 2d2e_A 224 ATGGPE 229 (250)
T ss_dssp EEESHH
T ss_pred EEeCHH
Confidence 988754
No 50
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-39 Score=372.71 Aligned_cols=204 Identities=23% Similarity=0.323 Sum_probs=178.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC-----Cc-ccceEEEeccCCCCCCC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-----FV-PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 259 (1119)
+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .. .++.+|||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999987 9999999988754 22 34679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 97 ltv~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~~~~~~-- 140 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMS----------KE------------------------EIRKRVEEVAKILDIHHVLNHFPRE-- 140 (353)
T ss_dssp SCHHHHHHGGGTTSSCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCGGG--
T ss_pred CCHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcCChhh--
Confidence 99999999976543211 00 0112467789999999999999887
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++
T Consensus 141 ---LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 141 ---LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGVLVK 216 (353)
T ss_dssp ---SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999977667888887765 4688999999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
No 51
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.8e-39 Score=357.50 Aligned_cols=215 Identities=25% Similarity=0.355 Sum_probs=175.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999998865422 3469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCC-CCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI-KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
+||+||+.|+......+ .+. .+- .... .+.. +....++++++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~-~~~---~~~----~~~~~~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~- 153 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES-PLN---SLF----YKKWIPKEE--------------EMVEKAFKILEFLKLSHLYDRKAGE- 153 (257)
T ss_dssp SBHHHHHHGGGTSTTSC-HHH---HHH----HCSSCCCCH--------------HHHHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred CcHHHHHHHHHhhhccC-ccc---ccc----cccccCCHH--------------HHHHHHHHHHHHcCCchhhCCCchh-
Confidence 99999999864320000 000 000 0000 0000 0112356789999999999999887
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. |.|+|++.|+. .++.++||+|++|+
T Consensus 154 ----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 154 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRL-DIVLNYIDHLYVMF 227 (257)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-STTGGGCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999765 78888877665 47788999999999
Q ss_pred CCeEEEEcChhH
Q 001228 419 EGQIVYQGPRDN 430 (1119)
Q Consensus 419 ~G~iv~~G~~~~ 430 (1119)
+|++++.|++++
T Consensus 228 ~G~i~~~g~~~~ 239 (257)
T 1g6h_A 228 NGQIIAEGRGEE 239 (257)
T ss_dssp TTEEEEEEESHH
T ss_pred CCEEEEEeCHHH
Confidence 999999999888
No 52
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.9e-40 Score=362.01 Aligned_cols=200 Identities=26% Similarity=0.384 Sum_probs=169.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCC-CCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQND-IHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~-~~~~~~tv~ 958 (1119)
+.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++....+++.+||++|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 469999999999999999999999999999999999876 45899999998875434567799999996 456779999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC--CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK--SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
||+.++.... .. .....+.++++++.++|. +..++.+ .+||||||||++|||||+.+|+||||||||+|
T Consensus 98 enl~~~~~~~-~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 98 DEVAFAVKNF-YP---DRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHTTTTT-CT---TSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhc-CC---HHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 9999864322 11 111234578899999998 7777764 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||+.++..+++.|+++.++|+|||++||+++ .+...||++++|.+ |++++.|+.
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999767999999999986 45567999999975 788888764
No 53
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=9.9e-40 Score=355.05 Aligned_cols=196 Identities=23% Similarity=0.372 Sum_probs=168.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
+|+||||+|++ |++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 59999999999 9999999999999999999999876 458999999987643 2235679999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+.|+...+ . .....+.++++++.+++.+..++.+ .+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 91 l~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 98864321 1 1122566889999999988887764 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1041 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+++.+++.|++++++ |+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999754 999999999975 46678999999975 899988874
No 54
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.9e-39 Score=351.18 Aligned_cols=204 Identities=22% Similarity=0.341 Sum_probs=173.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999998865432 2359999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC-CcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 338 (1119)
+||+||+.|+.... .. ..+ ....++.+++.++ |++..++.+++
T Consensus 96 ltv~enl~~~~~~~-~~--------------------~~~--------------~~~~~~~~l~~~~~l~~~~~~~~~~- 139 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD--------------------KEG--------------IKRDLEWIFSLFPRLKERLKQLGGT- 139 (240)
T ss_dssp SBHHHHHHGGGTTC-CC--------------------SSH--------------HHHHHHHHHHHCHHHHTTTTSBSSS-
T ss_pred CcHHHHHHHhhhcC-CC--------------------HHH--------------HHHHHHHHHHHcccHhhHhcCChhh-
Confidence 99999998853111 00 000 0113456788884 88888888876
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.++||+|++|+
T Consensus 140 ----LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 140 ----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLE 213 (240)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999976 478888887664 47889999999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988764
No 55
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.5e-39 Score=350.76 Aligned_cols=202 Identities=21% Similarity=0.315 Sum_probs=174.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+|+|||+++++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999987 999999999875432 2467999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.|+.+..+. . . ....++.+++.+||++..+..+++ ||
T Consensus 90 nl~~~~~~~~~----~------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----V------E--------------------------RDRRVREMAEKLGIAHLLDRKPAR-----LS 128 (240)
T ss_dssp HHHTTCTTSCH----H------H--------------------------HHHHHHHHHHTTTCTTTTTCCGGG-----SC
T ss_pred HHHHHHHHcCC----c------h--------------------------HHHHHHHHHHHcCCHHHhcCChhh-----CC
Confidence 99986432210 0 0 012356789999999988988887 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||+||+||+.+|+++||||||+|||+.++..+++.|+++++..+.|+|++.|+. .++..+||++++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998765578888887654 57889999999999999999
Q ss_pred EcChhHHHH
Q 001228 425 QGPRDNVLE 433 (1119)
Q Consensus 425 ~G~~~~~~~ 433 (1119)
.|+++++.+
T Consensus 208 ~g~~~~~~~ 216 (240)
T 2onk_A 208 KGKLKELFS 216 (240)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999988743
No 56
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1e-38 Score=357.75 Aligned_cols=208 Identities=25% Similarity=0.368 Sum_probs=166.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
.++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 46999999999999999999999999999999999999997 9999999999876543 467999999999885 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+|||.|+..... . .++....+.+. ....++ .+++..+|.+|+ ..
T Consensus 143 Tv~eNi~~~~~~~~----~------------------~~~~~~~~~~~---------l~~~i~--~lp~gl~t~~~~-~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----N------------------DEVEAAAQAAG---------IHDAIM--AFPEGYRTQVGE-RG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----H------------------HHHHHHHHHHT---------CHHHHH--HSTTGGGCEEST-TS
T ss_pred cHHHHHHhhcccCC----H------------------HHHHHHHHHhC---------cHHHHH--hccchhhhHhcC-Cc
Confidence 99999998643111 0 00111111110 011122 234566788875 34
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..|||||||||+|||||+.+|+||||||||+|||+.+...|.+.|+++.+ ++|+|++.|.. ..+. .||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~~-~aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRL-STVV-NADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSH-HHHH-TCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcCh-HHHH-cCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999864 67888776654 3454 49999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++++|+++++.+
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999865
No 57
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.5e-39 Score=362.59 Aligned_cols=213 Identities=25% Similarity=0.338 Sum_probs=174.0
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
+..++|+|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 51 ~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCE
Confidence 34689999987663 12469999999999999999999999999999999999876 45899999999
Q ss_pred cCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccc-------ccCC
Q 001228 932 PKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS-------MVGL 1001 (1119)
Q Consensus 932 ~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~ 1001 (1119)
++.. ..+++.+||++|++.+++ .||+||+.|+... .. .+.++++++.+++.+..+. .++.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CC----HHHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 8753 346778999999998875 5999999876321 11 1235666777766544322 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. +.+||||||||++|||||+.+|+|||||||||+||+.++..|++.|+++. +++|||+|||+++ ....||++++|+
T Consensus 187 ~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~aD~i~vl~ 262 (306)
T 3nh6_A 187 R-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLS--TVVNADQILVIK 262 (306)
T ss_dssp T-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHH--HHHTCSEEEEEE
T ss_pred C-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChH--HHHcCCEEEEEE
Confidence 2 35799999999999999999999999999999999999999999999986 4799999999975 455699999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 263 ~-G~iv~~G~~~ 273 (306)
T 3nh6_A 263 D-GCIVERGRHE 273 (306)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999854
No 58
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1e-38 Score=353.08 Aligned_cols=221 Identities=25% Similarity=0.295 Sum_probs=177.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 47888887654 23569999999999999999999999999999999999742225689999999875
Q ss_pred Ch---hhh-cceEEEEccCCCCCCCCCHHHHHHHHHH-hh---cCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCC
Q 001228 934 NQ---ETF-ARVSGYCEQNDIHSPYVTVYESLLYSAW-LR---LSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGV 1004 (1119)
Q Consensus 934 ~~---~~~-~~~~gy~~q~~~~~~~~tv~e~l~~~~~-l~---~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~ 1004 (1119)
.. ... ++.++|++|++.+++.+||.|++.+... .+ ........+..+.++++++.+++. .+.++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 32 222 2358999999999999999999987541 21 111122333456788999999996 46666532
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-hceEeEEecC
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRG 1083 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~g 1083 (1119)
.+||||||||++|||||+.+|+||||||||+|||+.+++.+++.|+++.++|+|||++||+++ .+... ||++++|.+
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 149999999999999999999999999999999999999999999998767999999999975 23343 799999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 8999988753
No 59
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.3e-38 Score=349.33 Aligned_cols=217 Identities=24% Similarity=0.369 Sum_probs=175.7
Q ss_pred eEEeccceeeeccccccccccccc-cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGED-RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~-~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
++++|+++.+ + +..+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.
T Consensus 5 l~i~~l~~~y-------------~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------ 63 (253)
T 2nq2_C 5 LSVENLGFYY-------------QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEE-------------TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE------
T ss_pred EEEeeEEEEe-------------CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE------
Confidence 5677766543 2 3569999999999999999999999999999999999876 3589997
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
.++.+||++|++.+++.+||+||+.++...... .........+.++++++.+++.+..++.+ .+||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 235699999999998899999999886432211 00112233456889999999998877764 47999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ .+...||++++|.+ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999876 999999999975 45678999999975 67 78776
Q ss_pred CCC--ChHHHHHHhh
Q 001228 1092 LGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1092 ~~~--~~~~l~~~f~ 1104 (1119)
..+ ....+.+.|.
T Consensus 212 ~~~~~~~~~~~~~~~ 226 (253)
T 2nq2_C 212 TRNILTSENLTALFH 226 (253)
T ss_dssp HHHHCCHHHHHHHHT
T ss_pred HHHHhCcHHHHHHhC
Confidence 432 2234555554
No 60
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.6e-39 Score=350.24 Aligned_cols=194 Identities=22% Similarity=0.348 Sum_probs=168.2
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---hhhhcceEEEEccCCCCCCCCCHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+|+||||+|++||+++|+||||||||||+++|+|... +. |+|.++|.++. ...+++.+||++|++.+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 8999999999999999999999999999999999876 46 99999998753 234556799999999988899999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC-------eEEEe
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS-------IIFMD 1031 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~-------illLD 1031 (1119)
||+.++.. . ... .+.++++++.+++.+..++.+ .+||||||||++|||||+.+|+ +||||
T Consensus 92 e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987521 1 111 345789999999988877764 4799999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+|||+.++..+++.|+++.++|+|||++||+++ .+...||++++|.+ |++++.|+..
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 218 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 218 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999777999999999975 45578999999975 7898888753
No 61
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6e-39 Score=355.50 Aligned_cols=217 Identities=23% Similarity=0.294 Sum_probs=171.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.. +...+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 47888887654210 11469999999999999999999999999999999999876 4589999999876
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccH---HHHHHHHHHHHHHc--CCCCccccccCCCCCC
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDT---KKRKMFVDEVMELV--ELKSLNDSMVGLPGVS 1005 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~---~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~ 1005 (1119)
.. ..+++.+||++|++.+++ .||+||+.|+... ...... ......+.++++.+ ++....++.+ .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~ 155 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-----N 155 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG-----T
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc-----C
Confidence 32 334567999999998877 5999999875321 111000 11122346677777 6766666653 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
+||||||||++|||||+.+|+||||||||+|||+.++..|++.|+++.+ .|+|||++||+++ ....||++++|.+ |
T Consensus 156 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~-G 232 (271)
T 2ixe_A 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE-G 232 (271)
T ss_dssp TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET-T
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-C
Confidence 7999999999999999999999999999999999999999999999864 4899999999964 4456999999975 7
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
++++.|+..
T Consensus 233 ~i~~~g~~~ 241 (271)
T 2ixe_A 233 SVCEQGTHL 241 (271)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 899888753
No 62
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-38 Score=350.23 Aligned_cols=205 Identities=23% Similarity=0.378 Sum_probs=174.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCC-CCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 262 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999987 999999998875322346799999995 56677999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc--ccccccccCccC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEMR 340 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 340 (1119)
+||+.|+.... .. . .+....++.+++.+||+ +..++.+++
T Consensus 97 ~enl~~~~~~~-~~--------------------~--------------~~~~~~~~~~l~~~gl~~~~~~~~~~~~--- 138 (266)
T 2yz2_A 97 FDEVAFAVKNF-YP--------------------D--------------RDPVPLVKKAMEFVGLDFDSFKDRVPFF--- 138 (266)
T ss_dssp HHHHHHTTTTT-CT--------------------T--------------SCSHHHHHHHHHHTTCCHHHHTTCCGGG---
T ss_pred HHHHHHHHHhc-CC--------------------H--------------HHHHHHHHHHHHHcCcCCcccccCChhh---
Confidence 99999864321 00 0 00112356789999999 888888877
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++..+||++++|++|
T Consensus 139 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~-~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 139 --LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDI-ETVINHVDRVVVLEKG 214 (266)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-TTTGGGCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999765 78888887765 4677889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
++++.|+++++.+
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
No 63
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-39 Score=345.04 Aligned_cols=201 Identities=20% Similarity=0.285 Sum_probs=166.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ ++ .+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 46777776543 34 69999999999999999999999999999999999876 4589999999876
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
. ..++.++|++|++.+++.+||+||+.++...+.. .. . .+.++++++.+++.+. ++. +.+|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 4 3567799999999999999999999987544321 11 1 3457889999999877 665 3579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ .+...+|+++++ +|+|
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~--~~~~ 210 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY--STKI 210 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG--BC--
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe--CCcc
Confidence 999999999999999999999999999999999999999766899999999986 455566776654 3554
No 64
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.6e-38 Score=347.37 Aligned_cols=211 Identities=25% Similarity=0.389 Sum_probs=171.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ .+++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred ceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence 577888876542 013469999999999999999999999999999999999876 4589999999886
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccccc-------CCCC
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV-------GLPG 1003 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~ 1003 (1119)
.. ..+++.+||++|++.+++ .||+||+.++.. ... .+.++++++.+++.++.++.+ +. .
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~ 142 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-Q 142 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-T
T ss_pred hhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-C
Confidence 43 335567999999998876 599999987521 111 234667788888866554432 11 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
+.+||||||||++|||||+.+|+||||||||+|||+.++..|++.|+++. +|+|||++||+++ ....||++++|.+
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~--~~~~~d~v~~l~~- 218 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK- 218 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 46799999999999999999999999999999999999999999999995 5999999999976 3356999999975
Q ss_pred cEEEEecCC
Q 001228 1084 GRVIYAGPL 1092 (1119)
Q Consensus 1084 G~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 219 G~i~~~g~~ 227 (247)
T 2ff7_A 219 GKIVEQGKH 227 (247)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 789988874
No 65
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.8e-37 Score=339.24 Aligned_cols=200 Identities=24% Similarity=0.406 Sum_probs=161.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999987 9999999998865432 356999999998886 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccc-------cc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-------DT 333 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-------dt 333 (1119)
||+||+.|+.. .. . . ..++.+++.+||.+.. ++
T Consensus 98 tv~enl~~~~~--~~-~-~------------------------------------~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP--GM-S-V------------------------------------EKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT--TC-C-H------------------------------------HHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC--CC-C-H------------------------------------HHHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 00 0 0 0112233444443322 23
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.++. ....|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .++|+|++.|++. .+ ..||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~-~~-~~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS-TV-KNADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG-GG-TTSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH-HH-HhCCE
Confidence 3332 234599999999999999999999999999999999999999999999984 3789888887754 44 56999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
No 66
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.3e-38 Score=348.25 Aligned_cols=208 Identities=26% Similarity=0.339 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--CCc---ccceEEEeccCCCC--
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFV---PQRTCAYISQHDLH-- 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~~~---~~~~~~yv~Q~d~~-- 256 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++. ... .++.++||+|++.+
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999987 999999998875 322 23569999998754
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
.+.+||+||+.|+..... + .+. .+..+ ....++.+++.+||++..++.++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~-~~~--------------~~~~~--------------~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G-VYQ--------------DIDDE--------------IRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CCHH--------------HHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c-ccc--------------CCcHH--------------HHHHHHHHHHHcCChhHhcCChh
Confidence 235799999988532100 0 000 00000 11235678999999999999888
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE--EEEEecCchhHHhhcCeE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM--IVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~--ii~~~q~~~~~~~~~D~i 414 (1119)
+ |||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++. ++|+ |++.|+. .++.++||+|
T Consensus 161 ~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v 233 (279)
T 2ihy_A 161 Y-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKI 233 (279)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEE
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEE
Confidence 7 9999999999999999999999999999999999999999999999765 7888 7777664 5777899999
Q ss_pred EEEcCCeEEEEcChhHH
Q 001228 415 ILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~ 431 (1119)
++|++|++++.|+++++
T Consensus 234 ~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 234 LLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999999998876
No 67
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=9e-38 Score=346.05 Aligned_cols=209 Identities=22% Similarity=0.363 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 45899999999999999999999999999999999999987 9999999998754322 356999999998887 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc--CCcccccccccCc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 338 (1119)
||+||+.|+..... . .+ ++.. +. ....++.+++.+ ||+...+..+++
T Consensus 108 tv~enl~~~~~~~~--~-~~---~~~~------------------~~------~~~~~~~~l~~l~~gl~~~~~~~~~~- 156 (271)
T 2ixe_A 108 SFRENIAYGLTRTP--T-ME---EITA------------------VA------MESGAHDFISGFPQGYDTEVGETGNQ- 156 (271)
T ss_dssp BHHHHHHTTCSSCC--C-HH---HHHH------------------HH------HHHTCHHHHHHSTTGGGSBCCGGGTT-
T ss_pred cHHHHHhhhcccCC--h-HH---HHHH------------------HH------HHHhHHHHHHhhhcchhhhhcCCcCC-
Confidence 99999988632110 0 00 0000 00 001134567777 777777777666
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..++|+|++.|++. .+ ..||+|++|+
T Consensus 157 ----LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~ 230 (271)
T 2ixe_A 157 ----LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLK 230 (271)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999886545788888877653 44 4599999999
Q ss_pred CCeEEEEcChhHHHH
Q 001228 419 EGQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1119)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
No 68
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.1e-37 Score=338.26 Aligned_cols=197 Identities=19% Similarity=0.259 Sum_probs=167.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 46999999999999999999999999999999999999987 999983 35699999999999899999
Q ss_pred HHHHHhhhhc-CCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 264 ETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 264 E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
||+.|+.... +... .+..+ ....++.+++.+||++..+..+++
T Consensus 85 enl~~~~~~~~~~~~-----------------~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFA-----------------KPKSH--------------DYQVAMQALDYLNLTHLAKREFTS----- 128 (253)
T ss_dssp HHHHGGGGGGSCTTC-----------------CCCHH--------------HHHHHHHHHHHTTCGGGTTSBGGG-----
T ss_pred HHHHHhhhhhccccc-----------------CCCHH--------------HHHHHHHHHHHcCChHHhcCChhh-----
Confidence 9999864211 0000 00000 012356789999999988888877
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-
Confidence 9999999999999999999999999999999999999999999999775578888877654 57778999999999999
Q ss_pred EEEcChhHH
Q 001228 423 VYQGPRDNV 431 (1119)
Q Consensus 423 v~~G~~~~~ 431 (1119)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998876
No 69
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-38 Score=345.66 Aligned_cols=198 Identities=27% Similarity=0.426 Sum_probs=164.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~t 956 (1119)
..+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++ .|
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~t 91 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GT 91 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EE
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-cc
Confidence 469999999999999999999999999999999999876 458999999987643 234567999999998877 59
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccccc-------CCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV-------GLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
|+||+.++.. . ... ++.++++++.+++.++.++.. +. .+.+||||||||++|||||+.+|+|||
T Consensus 92 v~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qrv~lAral~~~p~lll 162 (243)
T 1mv5_A 92 IRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKILM 162 (243)
T ss_dssp HHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-CcCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999987421 1 111 234678899999987765542 11 245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.+++.+++.|+++. +|+|||++||+++ ....||++++|++ |++++.|+..
T Consensus 163 LDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~~ 222 (243)
T 1mv5_A 163 LDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKHN 222 (243)
T ss_dssp EECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCHH
T ss_pred EECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999987 6999999999964 4456999999975 8898887653
No 70
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.8e-37 Score=338.62 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=164.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC--cCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~--~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 257 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|. ++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999998 5665 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCC-cccccccc
Q 001228 258 GEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL-DICADTMV 335 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 335 (1119)
+.+||+||+.|.... .+.. ...+ +....++.+++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~-------------------~~~~-------------~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGRE-------------------VGVA-------------EFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSC-------------------CCHH-------------HHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhcccc-------------------CCHH-------------HHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999885421 1100 0000 001235678999999 47788777
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh-cCeE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDI 414 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~i 414 (1119)
++ +|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++..+ ||+|
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQ-RILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSS-GGGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCCEE
Confidence 53 3999999999999999999999999999999999999999999999864 478888887765 466667 5999
Q ss_pred EEEcCCeEEEEcChhH
Q 001228 415 ILLSEGQIVYQGPRDN 430 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~ 430 (1119)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
No 71
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.7e-37 Score=339.05 Aligned_cols=197 Identities=24% Similarity=0.342 Sum_probs=170.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 261 (1119)
++|+|+|+.+++|++++|+|||||||||||++|+|.++| . |+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 479999999999999999999999999999999999987 4 99999999875432 2356999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|+.. ... . ...++.+++.+||++..+..+++
T Consensus 90 v~e~l~~~~~-~~~---------------------~-----------------~~~~~~~l~~~~l~~~~~~~~~~---- 126 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT---------------------R-----------------TELLNDVAGALALDDKLGRSTNQ---- 126 (249)
T ss_dssp HHHHHHTTCS-STT---------------------C-----------------HHHHHHHHHHTTCGGGTTSBGGG----
T ss_pred HHHHHHHhhc-cCC---------------------c-----------------HHHHHHHHHHcCChhHhcCChhh----
Confidence 9999987521 000 0 01246688999999988888876
Q ss_pred CCChHHHHHHHHHHHHhcCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 342 GISGGQKKRVTTGEMLVGTAN-------VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~-------illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
|||||||||+||+||+.+|+ +|||||||+|||+.++..+.+.|+++++. ++|+|++.|+ ..++..++|++
T Consensus 127 -LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd-~~~~~~~~d~v 203 (249)
T 2qi9_C 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHD-LNHTLRHAHRA 203 (249)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEE
Confidence 99999999999999999999 99999999999999999999999999765 7788777665 45777899999
Q ss_pred EEEcCCeEEEEcChhHH
Q 001228 415 ILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~ 431 (1119)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998876
No 72
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.5e-37 Score=337.71 Aligned_cols=220 Identities=22% Similarity=0.257 Sum_probs=172.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 257 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 46999999999999999999999999999999999984 454 8999999998765432 23499999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 336 (1119)
+.+||.|++.+...... . ..+. +.... .+....++++++.+||+ +..++.++
T Consensus 110 ~~~tv~e~~~~~~~~~~-------------~--~~~~-~~~~~-----------~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVR-------------S--YRGQ-ETLDR-----------FDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHHH-------------H--GGGC-CCCCH-----------HHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhhh-------------h--hhcc-ccCCH-----------HHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 99999999987431000 0 0000 00000 00112356789999996 56777765
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh-cCeEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~i~ 415 (1119)
. .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .++|+|++.|++ .++..+ ||+++
T Consensus 163 ~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 V----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIKPDYVH 236 (267)
T ss_dssp T----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSCCSEEE
T ss_pred c----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhcCCEEE
Confidence 1 2999999999999999999999999999999999999999999998854 377888877764 455565 89999
Q ss_pred EEcCCeEEEEcChhHHHHHHHhcCC
Q 001228 416 LLSEGQIVYQGPRDNVLEFFEHMGF 440 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~f~~~G~ 440 (1119)
+|++|++++.|+++++.. ++..||
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEECCEEEEEcCHHHHhh-hhhcch
Confidence 999999999999988753 344444
No 73
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-37 Score=339.34 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 46899999999999999999999999999999999999987 999999999875432 3467999999998887 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccc------
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM------ 334 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~------ 334 (1119)
||+||+.|+... .. . ...++.+++.+||.+..+..
T Consensus 91 tv~enl~~~~~~-~~-~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-DY-T-------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-CS-C-------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-CC-C-------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 00 0 01134456677776654433
Q ss_pred -ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 335 -VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 335 -vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .++|+|++.|++. .+ ..||+
T Consensus 132 ~~~~-~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~-~~-~~~d~ 206 (243)
T 1mv5_A 132 EVGE-RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLS-TI-VDADK 206 (243)
T ss_dssp EEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHH-HH-HHCSE
T ss_pred hhcc-CcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChH-HH-HhCCE
Confidence 332 245599999999999999999999999999999999999999999999986 3788888887753 44 56999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001228 414 IILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~ 433 (1119)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
No 74
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3e-37 Score=339.97 Aligned_cols=212 Identities=26% Similarity=0.409 Sum_probs=168.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.. ..+.+|+||||+|++||++||+||||||||||+++|+|... + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 46888887655310 01359999999999999999999999999999999999875 3 79999999876
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccc-------cccCCCC
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND-------SMVGLPG 1003 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 1003 (1119)
.. ..+++.+||++|++.+++ .||+||+.++.. ... .+.+.++++.+++.+..+ ...+. .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~ 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN-K 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-S
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccC-C
Confidence 32 335667999999998876 599999987421 111 123566777777654322 11222 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
+.+||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++. ...||++++|.+
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~--~~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST--ISSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--STTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH--HHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 8999999999763 356999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 229 G~i~~~g~~~ 238 (260)
T 2ghi_A 229 GKIVEKGTHK 238 (260)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 8999888753
No 75
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-37 Score=339.59 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=161.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEE-EEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSG-YCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~g-y~~q~~~~~~~~tv~ 958 (1119)
+.+|+||||+|+ ||+++|+||||||||||+++|+|.. + .+|+|.++|.++.....++.+| |++|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 469999999999 9999999999999999999999987 4 4899999997753211255799 99999877 89999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
||+.+...++ .. ..+.++++++.+++. +..++.+ .+||||||||++|||||+.+|++|||||||+||
T Consensus 92 enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 92 DIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9999875433 11 123578899999998 8777764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhc-eEeEEecCcEEEEecCC
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~~l~l~~gG~v~~~g~~ 1092 (1119)
|+.++..+++.|+++.+ |||++||+++ .+...|| ++++|.+ |++++.|+.
T Consensus 160 D~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp CHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred CHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 99999999999998753 9999999975 4567799 9999975 889988864
No 76
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.2e-36 Score=333.13 Aligned_cols=200 Identities=23% Similarity=0.363 Sum_probs=161.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.+++ +|+|.++|+++.... .++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4589999999999999999999999999999999999864 799999999875432 2357999999998886 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc-------CCcccccc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-------GLDICADT 333 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 333 (1119)
||+||+.|+.. . ... + .+..+++.+ +|++..||
T Consensus 108 tv~enl~~~~~--~-~~~----------------------~---------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL--D-ATD----------------------E---------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT--T-CCH----------------------H---------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC--C-CCH----------------------H---------------HHHHHHHHhCCHHHHHhccccccc
Confidence 99999987421 0 000 0 011222233 34555666
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.++. ....|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ ++|+|++.|++. .+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~-~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLS-TI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-GS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HH-HhCCE
Confidence 6653 3456999999999999999999999999999999999999999999999853 688888887764 34 56999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001228 414 IILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~ 433 (1119)
|++|++|+++..|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 77
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-36 Score=332.93 Aligned_cols=194 Identities=21% Similarity=0.203 Sum_probs=166.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEE-EeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|++++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|+++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 87 999999998775321245799 99999877 7999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCccCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~r 341 (1119)
+||+.|...... .....++.+++.+||+ +..++.+++
T Consensus 91 ~enl~~~~~~~~--------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~~~---- 128 (263)
T 2pjz_A 91 NDIVYLYEELKG--------------------------------------LDRDLFLEMLKALKLGEEILRRKLYK---- 128 (263)
T ss_dssp HHHHHHHHHHTC--------------------------------------CCHHHHHHHHHHTTCCGGGGGSBGGG----
T ss_pred HHHHHHhhhhcc--------------------------------------hHHHHHHHHHHHcCCChhHhcCChhh----
Confidence 999988543210 0011346688999998 888888877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC-eEEEEcCC
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD-DIILLSEG 420 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D-~i~lL~~G 420 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|++++ . |+|++.|++ .++.++|| ++++|++|
T Consensus 129 -LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~-~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 129 -LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHEL-DMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp -SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCG-GGGGGCTTSEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCH-HHHHHhcCceEEEEECC
Confidence 99999999999999999999999999999999999999999999864 2 777777665 56778999 99999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
No 78
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.7e-37 Score=326.46 Aligned_cols=188 Identities=17% Similarity=0.265 Sum_probs=158.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHH
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999987 999999998875 24567999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.|+....+. .. + ...++.+++.+||++. +..+++ ||
T Consensus 98 nl~~~~~~~~~--------------------~~---------------~-~~~~~~~l~~~gl~~~-~~~~~~-----LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV--------------------KV---------------N-KNEIMDALESVEVLDL-KKKLGE-----LS 135 (214)
T ss_dssp HHHHHHHHTTC--------------------CC---------------C-HHHHHHHHHHTTCCCT-TSBGGG-----SC
T ss_pred HHHHHHHhcCC--------------------ch---------------H-HHHHHHHHHHcCCCcC-CCChhh-----CC
Confidence 99886432210 00 0 1234668899999887 777766 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++. ++|+|++.|++. ++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999998754 788888887764 677788887654 3443
No 79
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.6e-35 Score=358.77 Aligned_cols=214 Identities=22% Similarity=0.311 Sum_probs=176.2
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++++|+++.++. +++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 46899998876631 11459999999999999999999999999999999999876 458999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccc-------cCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM-------VGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~ 1002 (1119)
+. ...+++.+||++|++.+++. ||+||+.++.. .+.. ++.++++++.+++.+..++. ++..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE----GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC----CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 64 34567789999999998875 99999987531 1111 34477888888887654443 2322
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|+|++||+++ ....||++++|++
T Consensus 478 -~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~ 553 (582)
T 3b5x_A 478 -GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 999999999974 4567999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 554 -G~i~~~g~~~ 563 (582)
T 3b5x_A 554 -GEIIERGRHA 563 (582)
T ss_pred -CEEEEECCHH
Confidence 8999998753
No 80
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.2e-37 Score=352.33 Aligned_cols=200 Identities=24% Similarity=0.277 Sum_probs=165.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
..+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++..... ++.++||+|++.+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 468999999999999999999999999999999999986 4 8999999999876543 367999999999997 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC---
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD--- 337 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~--- 337 (1119)
||+||+.+.... ....++.+++.+||++..+..+..
T Consensus 109 tv~enl~~~~~~-----------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH-----------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS-----------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc-----------------------------------------CHHHHHHHHHHhCCHHHHhhccccccc
Confidence 999999642110 001234567778887665555432
Q ss_pred ---ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 338 ---EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 338 ---~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+....|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+.|+|++.|+. +....||+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHHhCCEE
Confidence 2234499999999999999999999999999999999999999999998764 367777776664 566779999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|++|+++..|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
No 81
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.1e-36 Score=325.97 Aligned_cols=200 Identities=24% Similarity=0.373 Sum_probs=156.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++. +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 3677777765421 23469999999999999999999999999999999999876 4589999998
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccc-------ccCCCCCCC
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS-------MVGLPGVSG 1006 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~~ 1006 (1119)
.++|++|++.+++. ||+||+.++.. .... ...++++.+++.+..+. ..+. .+.+
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCc
Confidence 38999999988875 99999987521 1111 12344455554332221 1221 2458
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||||||||++|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||+++ ....||++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 4899999999964 3456999999975 78
Q ss_pred EEEecCC
Q 001228 1086 VIYAGPL 1092 (1119)
Q Consensus 1086 v~~~g~~ 1092 (1119)
+++.|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9888874
No 82
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=352.01 Aligned_cols=212 Identities=22% Similarity=0.295 Sum_probs=174.4
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++++|+++.++. ++..+|+||||+|++||+++|+|||||||||||++|+|... .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 35788888765521 23569999999999999999999999999999999999864 47999999988
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCC------CC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL------PG 1003 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~ 1003 (1119)
+.. ..+++.+||++|++.+++ +||+||+.+.. .. .++.++++++.++|.++.++.+.. ..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 643 345678999999999887 69999996321 11 123478899999998877766431 11
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..+|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .++|||++||+++ ....||++++|++
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~- 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE- 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-
Confidence 23499999999999999999999999999999999999999999999864 5899999999974 4566999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|+++..|+..
T Consensus 229 G~i~~~g~~~ 238 (390)
T 3gd7_A 229 NKVRQYDSIL 238 (390)
T ss_dssp TEEEEESSHH
T ss_pred CEEEEECCHH
Confidence 8999998754
No 83
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-35 Score=361.25 Aligned_cols=212 Identities=24% Similarity=0.358 Sum_probs=171.6
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEE
Confidence 4689999887653 12359999999999999999999999999999999999876 458999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccccc-------CCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV-------GLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~ 1002 (1119)
+. ...+++.+||++|++.+++ .||+||+.++.. +.. ++.++++++.+++.+..+..+ +.
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~- 487 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GAT----DEEIKEAAKLTHSDHFIKHLPEGYETVLTD- 487 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCC----TTHHHHHTTTTTCHHHHHTSTTGGGCBCHH-
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccchhcC-
Confidence 64 3456778999999998886 599999987521 111 122456666666544333321 11
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
...+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ....||++++|++
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~~~~~d~i~~l~~ 564 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN--TIKNADLIIVLRD 564 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT--HHHHCSEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEEC
Confidence 124799999999999999999999999999999999999999999999986 5999999999986 3466999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 565 -G~i~~~g~~~ 574 (598)
T 3qf4_B 565 -GEIVEMGKHD 574 (598)
T ss_dssp -SSEEECSCHH
T ss_pred -CEEEEECCHH
Confidence 8899999854
No 84
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4e-36 Score=326.60 Aligned_cols=200 Identities=22% Similarity=0.368 Sum_probs=154.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++. ++..+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 567777765421 12469999999999999999999999999999999999876 5689999998
Q ss_pred hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC------Ccc-ccccCCCCCCCC
Q 001228 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK------SLN-DSMVGLPGVSGL 1007 (1119)
Q Consensus 935 ~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~------~~~-~~~~~~~~~~~L 1007 (1119)
.+||++|++.+ +..||+||+.++... ... ..+++++.+++. +.. +...+. .+.+|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~----~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL----EEP------YYRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC----CTT------HHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc----CHH------HHHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 28999999864 678999999875321 111 122333333332 110 111111 24579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
|||||||++|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++||+++. ...||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~--~~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY--LPQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT--GGGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH--HHhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 58999999999863 356999999975 7
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
++++.|+..
T Consensus 205 ~i~~~g~~~ 213 (237)
T 2cbz_A 205 KISEMGSYQ 213 (237)
T ss_dssp EEEEEECHH
T ss_pred EEEEeCCHH
Confidence 999888753
No 85
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=9e-36 Score=322.28 Aligned_cols=196 Identities=22% Similarity=0.332 Sum_probs=151.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46999999999999999999999999999999999999987 99999998 48999999998885 999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.|+.... ..+ . +...+.. ..+..++.+ +...++.+++ ....|
T Consensus 87 enl~~~~~~~----~~~-~------------------~~~~~~~---------~l~~~~~~~--~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----EYR-Y------------------RSVIKAC---------QLEEDISKF--AEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----HHH-H------------------HHHHHHT---------TCHHHHTTS--TTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----hHH-H------------------HHHHHHh---------CcHHHHHhC--cccccccccC-CCCcC
Confidence 9998853210 000 0 0000000 001122222 2233455542 24569
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~-l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
||||||||+||+||+.+|+++||||||+|||+.++..+.+. ++++. .++|+|++.|++. ++ ..||++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH-HH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChH-HH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 45543 2678888877753 44 56999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998874
No 86
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.6e-36 Score=368.94 Aligned_cols=215 Identities=22% Similarity=0.299 Sum_probs=173.9
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
+..++|+|+++.++. ++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~ 405 (587)
T 3qf4_A 339 EGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDEL 405 (587)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSS
T ss_pred CCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCE
Confidence 346899999886641 23469999999999999999999999999999999999876 45899999999
Q ss_pred cCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCC
Q 001228 932 PKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGL 1001 (1119)
Q Consensus 932 ~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~ 1001 (1119)
++.. ..+++.++|++|++.+++. ||+||+.++.. +... +.++++++..++.+. .+..++.
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~ 475 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVER 475 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECS
T ss_pred EcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcC
Confidence 8643 4567789999999998865 99999987521 1111 234455555555432 2333333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. +.+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +|+|+|++||+++ ....||++++|+
T Consensus 476 ~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~ 551 (587)
T 3qf4_A 476 G-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH 551 (587)
T ss_dssp S-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE
T ss_pred C-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE
Confidence 2 45799999999999999999999999999999999999999999999975 5899999999974 556899999997
Q ss_pred cCcEEEEecCCCC
Q 001228 1082 RGGRVIYAGPLGH 1094 (1119)
Q Consensus 1082 ~gG~v~~~g~~~~ 1094 (1119)
+ |++++.|+..+
T Consensus 552 ~-G~i~~~g~~~e 563 (587)
T 3qf4_A 552 E-GKVAGFGTHKE 563 (587)
T ss_dssp T-TEEEEEECHHH
T ss_pred C-CEEEEECCHHH
Confidence 5 89999998643
No 87
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.8e-35 Score=362.44 Aligned_cols=218 Identities=27% Similarity=0.367 Sum_probs=177.8
Q ss_pred ce-eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 853 LS-LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 853 ~~-i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
.. ++++|+++.++.. ++..+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 339 ~~~i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~ 406 (595)
T 2yl4_A 339 QGALEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGH 406 (595)
T ss_dssp CCCEEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCE
Confidence 35 8999998766310 12469999999999999999999999999999999999876 45899999998
Q ss_pred cCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCC
Q 001228 932 PKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGL 1001 (1119)
Q Consensus 932 ~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~ 1001 (1119)
++.. ..+++.+||++|++.+++ .||+||+.++.... ... .++.++++++.+++.+.. |..++.
T Consensus 407 ~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~ 479 (595)
T 2yl4_A 407 DIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSV----TAEEIQRVAEVANAVAFIRNFPQGFNTVVGE 479 (595)
T ss_dssp ETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTS----CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSS
T ss_pred EhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--ccc----CHHHHHHHHHHcCCHHHHHhCcccccccccC
Confidence 8643 345678999999999887 49999998853210 011 134477888888876543 333443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. +.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|||++||+++ ....||++++|+
T Consensus 480 ~-~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~ 555 (595)
T 2yl4_A 480 K-GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLD 555 (595)
T ss_dssp S-SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEE
Confidence 3 357999999999999999999999999999999999999999999999875 899999999974 456799999997
Q ss_pred cCcEEEEecCCCC
Q 001228 1082 RGGRVIYAGPLGH 1094 (1119)
Q Consensus 1082 ~gG~v~~~g~~~~ 1094 (1119)
+ |++++.|+..+
T Consensus 556 ~-G~i~~~g~~~~ 567 (595)
T 2yl4_A 556 Q-GKITEYGKHEE 567 (595)
T ss_dssp T-TEEEEEECSCC
T ss_pred C-CEEEEECCHHH
Confidence 5 89999998654
No 88
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.9e-35 Score=360.82 Aligned_cols=208 Identities=24% Similarity=0.394 Sum_probs=168.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 46899999999999999999999999999999999999997 9999999999876543 4679999999999976
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.|+.... +.++..+++...+ .+.. .-.+++..||.+|+ .+
T Consensus 430 tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~--~~~lp~g~~t~~~~-~g 475 (578)
T 4a82_A 430 TVKENILLGRPTA-------------------------TDEEVVEAAKMAN------AHDF--IMNLPQGYDTEVGE-RG 475 (578)
T ss_dssp BHHHHHGGGCSSC-------------------------CHHHHHHHHHHTT------CHHH--HHTSTTGGGCBCCG-GG
T ss_pred cHHHHHhcCCCCC-------------------------CHHHHHHHHHHhC------cHHH--HHhCcchhhhhhcc-CC
Confidence 9999998853110 0011111111111 0111 22456778899985 44
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..|||||||||+|||||+.+|++++|||||||||+.+...+.+.++++.+ ++|+|++.|++. . .+.||+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~-~-~~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS-T-ITHADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-G-TTTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHcCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998753 688888877764 3 4569999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 89
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.4e-35 Score=360.65 Aligned_cols=204 Identities=23% Similarity=0.393 Sum_probs=166.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 46999999999999999999999999999999999999997 9999999999876542 457999999999987 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC-------Ccccccc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-------LDICADT 333 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 333 (1119)
||+||+.|+...... .+.+ .++++++.+| |++..||
T Consensus 433 tv~eni~~~~~~~~~----------------------~~~~---------------~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 433 SIAENIAYGADDPSS----------------------VTAE---------------EIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp BHHHHHHTTSSSTTT----------------------SCHH---------------HHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CHHHHHhhcCCCccc----------------------cCHH---------------HHHHHHHHcCCHHHHHhCcccccc
Confidence 999999885321000 0000 1222333333 4567889
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+|+ .+..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.+ ++|+|++.|++. . .+.||+
T Consensus 476 ~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~-~-~~~~d~ 550 (595)
T 2yl4_A 476 VVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLS-T-IKNANM 550 (595)
T ss_dssp BCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHH-H-HHHSSE
T ss_pred cccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-H-HHcCCE
Confidence 9986 3456999999999999999999999999999999999999999999999865 688888877753 3 467999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001228 414 IILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~ 433 (1119)
|++|++|+++++|+++++.+
T Consensus 551 i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 551 VAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp EEEEETTEEEEEECSCC---
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 90
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-35 Score=360.87 Aligned_cols=208 Identities=25% Similarity=0.350 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+.
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG- 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-
Confidence 46899999999999999999999999999999999999997 9999999999876543 4679999999999865
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.|+.... +.++..+++...+ .+..+ -.|++..||.+|+ ..
T Consensus 432 tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~i--~~l~~g~~~~~~~-~~ 477 (587)
T 3qf4_A 432 TIKENLKWGREDA-------------------------TDDEIVEAAKIAQ------IHDFI--ISLPEGYDSRVER-GG 477 (587)
T ss_dssp EHHHHHTTTCSSC-------------------------CHHHHHHHHHHTT------CHHHH--HTSSSGGGCEECS-SS
T ss_pred cHHHHHhccCCCC-------------------------CHHHHHHHHHHhC------cHHHH--HhcccchhhHhcC-CC
Confidence 9999998753210 0001111111100 01111 2456678888885 44
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..|||||||||+|||||+.+|++|+||||||+||+.+...+.+.++++.+ ++|+|++.|++. ....||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~--~~~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK--GCTTFIITQKIP--TALLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST--TCEEEEEESCHH--HHTTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC--CCEEEEEecChH--HHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998743 789988888764 44689999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999865
No 91
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.2e-35 Score=364.31 Aligned_cols=214 Identities=24% Similarity=0.349 Sum_probs=174.2
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
+..++++|+++.++. ++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 346899999876642 22459999999999999999999999999999999999876 45899999998
Q ss_pred cCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccc-------cccCC
Q 001228 932 PKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND-------SMVGL 1001 (1119)
Q Consensus 932 ~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~ 1001 (1119)
++.. ..+++.+||++|++.+++. ||+||+.++.. +.. ++.++++++..++.+..+ ..++.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 7643 4567789999999998876 99999987521 111 233566777776654332 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. ..+||||||||++|||||+++|+||+|||||||||+.+++.+++.++++. +|+|+|++||+++ ....||++++|+
T Consensus 474 ~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~~~~~d~i~~l~ 549 (578)
T 4a82_A 474 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE 549 (578)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE
Confidence 2 34799999999999999999999999999999999999999999999885 5899999999986 346799999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 550 ~-G~i~~~g~~~ 560 (578)
T 4a82_A 550 N-GHIVETGTHR 560 (578)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999854
No 92
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=321.76 Aligned_cols=196 Identities=23% Similarity=0.313 Sum_probs=151.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++.+ +.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~~-~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAWI-QNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCCC-CSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCcC-CCcCHH
Confidence 46899999999999999999999999999999999999886 99999998 38999999864 578999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCccCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRRG 342 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~rG 342 (1119)
||+.|+.... .. ..+...++ ..+.+.+++. ...++.++ .....
T Consensus 84 enl~~~~~~~--~~---------------------~~~~~~~~------------~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EP---------------------YYRSVIQA------------CALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TT---------------------HHHHHHHH------------TTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HH---------------------HHHHHHHH------------HhhHHHHHhcccccccccc-CCCCC
Confidence 9998853210 00 00000000 0011223321 12233333 23345
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLK---QMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~---~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+++.|+ ++. .++|+|++.|++. .+ ..||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999984 332 3788888888764 33 57999999999
Q ss_pred CeEEEEcChhHHHH
Q 001228 420 GQIVYQGPRDNVLE 433 (1119)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1119)
|++++.|+++++.+
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988753
No 93
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.5e-35 Score=363.89 Aligned_cols=214 Identities=22% Similarity=0.317 Sum_probs=175.6
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++++|+++.++. +++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEE
Confidence 35889998876531 11459999999999999999999999999999999999876 458999999988
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccc-------ccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS-------MVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~ 1002 (1119)
+.. ..+++.+||++|++.+++. ||+||+.++.. .+.. ++.++++++.+++.+..++ .++..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFND-TVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 643 3456789999999998875 99999987531 1111 2346788888888654433 23332
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|+|++||+++ ....||++++|++
T Consensus 478 -~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~ 553 (582)
T 3b60_A 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED 553 (582)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 999999999986 3467999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 554 -G~i~~~g~~~ 563 (582)
T 3b60_A 554 -GIIVERGTHS 563 (582)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEecCHH
Confidence 8999988753
No 94
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.6e-35 Score=359.58 Aligned_cols=202 Identities=23% Similarity=0.388 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~- 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND- 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-
Confidence 46899999999999999999999999999999999999997 9999999999876432 4579999999999875
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC-------Ccccccc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-------LDICADT 333 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 333 (1119)
||+||+.|+.. .. . +.++ ++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~~--~---------------------~~~~---------------~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-EE--Y---------------------SREQ---------------IEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-SC--C---------------------CHHH---------------HHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-CC--C---------------------CHHH---------------HHHHHHHcCCHHHHHhccccccc
Confidence 99999988531 00 0 0001 112222333 3456788
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+|+ .+..|||||||||+|||||+.+|++++|||||||||+.+...+.+.++++.+ ++|+|++.|++. ..+.||+
T Consensus 473 ~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~ 547 (582)
T 3b60_A 473 IIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEQADE 547 (582)
T ss_dssp BCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG--GTTTCSE
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHH--HHHhCCE
Confidence 8885 3566999999999999999999999999999999999999999999999864 789888888764 3467999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001228 414 IILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~ 433 (1119)
|++|++|+++++|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
No 95
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.8e-35 Score=358.62 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=166.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .++.++||+|++.+++.
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~- 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND- 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-
Confidence 45899999999999999999999999999999999999997 999999999886543 24679999999999874
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC-------Ccccccc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-------LDICADT 333 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 333 (1119)
||+||+.|+.. .. . +.++ ++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~~--~---------------------~~~~---------------~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-GE--Y---------------------TREQ---------------IEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-CC--C---------------------CHHH---------------HHHHHHHCCCHHHHHhCcccccc
Confidence 99999988531 00 0 0000 112222333 3456788
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+|+ .+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ..+.||+
T Consensus 473 ~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~ 547 (582)
T 3b5x_A 473 VIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLS--TIEQADE 547 (582)
T ss_pred hhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH--HHHhCCE
Confidence 8885 3456999999999999999999999999999999999999999999999853 789998888764 3457999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001228 414 IILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~ 433 (1119)
|++|++|+++++|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998854
No 96
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.5e-35 Score=360.28 Aligned_cols=208 Identities=25% Similarity=0.377 Sum_probs=168.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 46899999999999999999999999999999999999997 9999999999876543 467999999999886 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.|+..... +.++ .+++...+ .+..++ .+++..||.+|+ .+
T Consensus 444 tv~eni~~~~~~~~----------------------~~~~---~~~~~~~~------~~~~~~--~~~~g~~t~~~~-~g 489 (598)
T 3qf4_B 444 TVKENLKYGNPGAT----------------------DEEI---KEAAKLTH------SDHFIK--HLPEGYETVLTD-NG 489 (598)
T ss_dssp BHHHHHHSSSTTCC----------------------TTHH---HHHTTTTT------CHHHHH--TSTTGGGCBCHH-HH
T ss_pred cHHHHHhcCCCCCC----------------------HHHH---HHHHHHhC------CHHHHH--hccccccchhcC-CC
Confidence 99999988522100 0011 11110000 011122 355677888884 34
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..|||||||||+|||||+.+|++|+||||||+||+.+...+.+.++++.+ ++|+|++.|++. . ...||+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~-~-~~~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLN-T-IKNADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSEEEEESCCTT-H-HHHCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHcCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999853 789998888775 3 4569999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 97
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.3e-35 Score=385.58 Aligned_cols=211 Identities=26% Similarity=0.353 Sum_probs=173.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1119)
..+||+|||++|+|||.+||+||+|||||||+++|.|.++|. +|+|.+||+++.+... ++.++||||++.+|+.
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc
Confidence 456999999999999999999999999999999999999997 9999999999987653 5789999999999975
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
||||||.|+..- ++.+.++..+++...+.. + . .-.|++..||.||+ .
T Consensus 1168 -TIreNI~~gld~-----------------------~~~sd~ei~~Al~~a~l~-----~-~--I~~Lp~GldT~vge-~ 1214 (1321)
T 4f4c_A 1168 -SIAENIIYGLDP-----------------------SSVTMAQVEEAARLANIH-----N-F--IAELPEGFETRVGD-R 1214 (1321)
T ss_dssp -EHHHHHSSSSCT-----------------------TTSCHHHHHHHHHHTTCH-----H-H--HHTSTTTTCSEETT-T
T ss_pred -cHHHHHhccCCC-----------------------CCCCHHHHHHHHHHhCCh-----H-H--HHcCcCCCCCEecC-C
Confidence 999999875311 011112222333222211 1 1 22578889999996 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
+..||||||||++|||||+.+|+||+||||||+||+.+...|.+.|++..+ ++|+|+..|.. .+...||+|+||++
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~--~~TvI~IAHRL--sTi~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE--GRTCIVIAHRL--NTVMNADCIAVVSN 1290 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS--SSEEEEECSSS--STTTTCSEEEEESS
T ss_pred CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC--CCEEEEeccCH--HHHHhCCEEEEEEC
Confidence 455999999999999999999999999999999999999999999988653 78988887765 46778999999999
Q ss_pred CeEEEEcChhHHHH
Q 001228 420 GQIVYQGPRDNVLE 433 (1119)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1119)
|+|+++|+++++++
T Consensus 1291 G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1291 GTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999985
No 98
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.6e-34 Score=320.43 Aligned_cols=184 Identities=24% Similarity=0.384 Sum_probs=146.7
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++| .++|++|++.+++. ||+||
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~en 118 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQNSWIMPG-TIKEN 118 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEEECSSCCCCSS-BHHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEEEeCCCccCcc-cHHHH
Confidence 58999999999999999999999999999999999876 5689999988 38999999988875 99999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccc-------cCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
+. +. . .... .+.++++.+++.+..+.. .+. .+.+||||||||++|||||+.+|+|||||||
T Consensus 119 l~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 119 II-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp HH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred hh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 97 31 1 1111 133455555554322211 111 1357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-HHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1034 TSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+|||+.++..+++.+ +++. +|+|||++||+++ ....||++++|.+ |++++.|+..
T Consensus 187 ts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~i~~~g~~~ 243 (290)
T 2bbs_A 187 FGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTFS 243 (290)
T ss_dssp TTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TEEEEEECHH
T ss_pred cccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-CeEEEeCCHH
Confidence 9999999999999974 4554 5899999999964 4456999999975 7899888753
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.1e-34 Score=316.49 Aligned_cols=195 Identities=22% Similarity=0.323 Sum_probs=148.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 116 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIK 116 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHH
Confidence 35899999999999999999999999999999999999886 99999998 48999999988875 999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+. +... .... .+...+.. ..+..++.+ ....++.+++ ....|
T Consensus 117 enl~-~~~~----~~~~-------------------~~~~~~~~---------~l~~~l~~~--~~~~~~~~~~-~~~~L 160 (290)
T 2bbs_A 117 ENII-GVSY----DEYR-------------------YRSVIKAC---------QLEEDISKF--AEKDNIVLGE-GGITL 160 (290)
T ss_dssp HHHH-TTCC----CHHH-------------------HHHHHHHT---------TCHHHHHTS--TTGGGCBC-----CCC
T ss_pred HHhh-Cccc----chHH-------------------HHHHHHHh---------ChHHHHHhc--cccccchhcC-ccCcC
Confidence 9997 3210 0000 00000000 001122222 2233444442 23459
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL-KQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
||||||||+||+||+.+|+++||||||+|||+.++..+.+.+ +++. .++|+|++.|++ ..+ ..||++++|++|++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~-~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGSS 236 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHSSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-HcCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999864 4443 267888887775 344 56999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+++++.
T Consensus 237 ~~~g~~~~l~ 246 (290)
T 2bbs_A 237 YFYGTFSELQ 246 (290)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHh
Confidence 9999998874
No 100
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6e-32 Score=357.41 Aligned_cols=215 Identities=26% Similarity=0.377 Sum_probs=173.7
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
...++|+|+++.++.. +...+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 385 ~g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~ 452 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQ 452 (1284)
T ss_dssp CCCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCE
Confidence 3468999998876421 12459999999999999999999999999999999999876 45899999998
Q ss_pred cCC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCC
Q 001228 932 PKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGL 1001 (1119)
Q Consensus 932 ~~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~ 1001 (1119)
++. ...+++.+|||+|++.+++. ||+||+.|+.. +.. ++.++++++..++.+. .+..+|.
T Consensus 453 ~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 522 (1284)
T 3g5u_A 453 DIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVT----MDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522 (1284)
T ss_dssp EGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCC----HHHHHHHHHHTTCHHHHHHSTTGGGCCCSS
T ss_pred EHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhccccccccccC
Confidence 764 34567789999999998876 99999998631 111 1234555555554332 2334444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. +.+||||||||++|||||+++|+||+||||||+||+++.+.+++.++++. +|+|+|+|+|+++ ....||++++|+
T Consensus 523 ~-g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl~ 598 (1284)
T 3g5u_A 523 R-GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGFD 598 (1284)
T ss_dssp S-SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEECS
T ss_pred C-CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE
Confidence 3 35799999999999999999999999999999999999999999998875 5999999999964 556799999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+|++++.|+..
T Consensus 599 -~G~i~~~g~~~ 609 (1284)
T 3g5u_A 599 -GGVIVEQGNHD 609 (1284)
T ss_dssp -SSCCCCEECHH
T ss_pred -CCEEEEECCHH
Confidence 58999998753
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=1.5e-30 Score=317.84 Aligned_cols=191 Identities=26% Similarity=0.303 Sum_probs=161.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577788889999999999999999999999999999987 899976 2369999999887788999998
Q ss_pred HHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCCh
Q 001228 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (1119)
Q Consensus 266 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSG 345 (1119)
+.+.... .+ . ....++.+++.+||.+..++.+++ |||
T Consensus 438 ~~~~~~~-----~~--------~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 474 (607)
T 3bk7_A 438 LSKIDSS-----KL--------N-------------------------SNFYKTELLKPLGIIDLYDRNVED-----LSG 474 (607)
T ss_dssp HHHHHHH-----HH--------H-------------------------CHHHHHHTHHHHTCTTTTTSBGGG-----CCH
T ss_pred HHhhhcc-----CC--------C-------------------------HHHHHHHHHHHcCCchHhcCChhh-----CCH
Confidence 8652100 00 0 011346688999999988999887 999
Q ss_pred HHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 001228 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (1119)
Q Consensus 346 GqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~--G~iv 423 (1119)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.| ...++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH-d~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999997666778777765 45688899999999986 8889
Q ss_pred EEcChhHHHH
Q 001228 424 YQGPRDNVLE 433 (1119)
Q Consensus 424 ~~G~~~~~~~ 433 (1119)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=2.3e-30 Score=313.25 Aligned_cols=191 Identities=26% Similarity=0.309 Sum_probs=160.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 467777888999999999999999999999999999986 899975 2359999999877788999998
Q ss_pred HHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCCh
Q 001228 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (1119)
Q Consensus 266 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSG 345 (1119)
+...... ... ....++.+++.+||.+..++.+++ |||
T Consensus 368 ~~~~~~~-----------~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 404 (538)
T 1yqt_A 368 LSKIDAS-----------KLN---------------------------SNFYKTELLKPLGIIDLYDREVNE-----LSG 404 (538)
T ss_dssp HHHHHHH-----------HHT---------------------------CHHHHHHTTTTTTCGGGTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC---------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCH
Confidence 7542100 000 011245678899999888998887 999
Q ss_pred HHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 001228 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (1119)
Q Consensus 346 GqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~--G~iv 423 (1119)
||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++..+.|+|++.| ...++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsH-d~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999987555778777655 55688899999999986 8899
Q ss_pred EEcChhHHHH
Q 001228 424 YQGPRDNVLE 433 (1119)
Q Consensus 424 ~~G~~~~~~~ 433 (1119)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=6.2e-30 Score=308.49 Aligned_cols=192 Identities=22% Similarity=0.253 Sum_probs=159.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
.|+++|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++| +.++|++|+......+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466778889999999999999999999999999999997 99999865 358999999777778999999
Q ss_pred HHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCCh
Q 001228 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (1119)
Q Consensus 266 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSG 345 (1119)
+.+...... .. ....++.+++.+||.+..+..+++ |||
T Consensus 351 l~~~~~~~~--------------------~~-----------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 388 (538)
T 3ozx_A 351 LENASKDAL--------------------ST-----------------SSWFFEEVTKRLNLHRLLESNVND-----LSG 388 (538)
T ss_dssp HHHHCSSTT--------------------CT-----------------TSHHHHHTTTTTTGGGCTTSBGGG-----CCH
T ss_pred HHHhhhhcc--------------------ch-----------------hHHHHHHHHHHcCCHHHhcCChhh-----CCH
Confidence 976321000 00 011245678899999999999887 999
Q ss_pred HHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 001228 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (1119)
Q Consensus 346 GqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~--G~iv 423 (1119)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++. |...++..+||+|++|++ |...
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vs-Hdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID-HDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC-SCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999999876677777665 556688999999999986 6677
Q ss_pred EEcChhHHH
Q 001228 424 YQGPRDNVL 432 (1119)
Q Consensus 424 ~~G~~~~~~ 432 (1119)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
No 104
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.96 E-value=5.4e-32 Score=328.44 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=113.2
Q ss_pred eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHH
Q 001228 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAW 966 (1119)
Q Consensus 887 s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~ 966 (1119)
++.+++|++++|+|+||||||||++.++|.... .|+ +.+.|++|++.. .+.++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~~----~l~~~~----- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESRA----QLLRNA----- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCHH----HHHHHH-----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCHH----HHHHHH-----
Confidence 459999999999999999999999999985321 121 124555665310 122221
Q ss_pred hhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH-----H
Q 001228 967 LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1041 (1119)
Q Consensus 967 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~-----~ 1041 (1119)
.+.. .. +++ +...++..+.+.. +..||+||+||+++|+++..+|++|++| ||+|||.. .
T Consensus 329 ~~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 329 YSWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp HTTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred HHcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 1111 11 112 2234555554444 3479999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCc----------cHHHHHhhceEeEEec
Q 001228 1042 AAIVMRTVRNTVDTGRTVVCTIHQP----------SIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~~g~tvi~~~H~~----------~~~~~~~~d~~l~l~~ 1082 (1119)
++.+.++++.+++.|.|||+|+|+. . .+...+|++++|.+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQY 442 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEE
Confidence 9999999999988899999999997 3 34567899999976
No 105
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-29 Score=308.18 Aligned_cols=193 Identities=24% Similarity=0.234 Sum_probs=160.6
Q ss_pred ceeeeceEEEEeCC-----eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPS-----RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 258 (1119)
..+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + .+..++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 789999999999999999999999986 7752 1 1346999999977666
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
..||+|++....+ +.. . .....+.+++.+||.+..+..+++
T Consensus 427 ~~tv~e~~~~~~~--~~~-------------------~-----------------~~~~~~~~l~~l~l~~~~~~~~~~- 467 (608)
T 3j16_B 427 PGTVRQLFFKKIR--GQF-------------------L-----------------NPQFQTDVVKPLRIDDIIDQEVQH- 467 (608)
T ss_dssp CSBHHHHHHHHCS--STT-------------------T-----------------SHHHHHHTHHHHTSTTTSSSBSSS-
T ss_pred CccHHHHHHHHhh--ccc-------------------c-----------------cHHHHHHHHHHcCChhhhcCChhh-
Confidence 7899998753211 100 0 011245678999999999999887
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..|.|+|++.| ...++..++|+|++|+
T Consensus 468 ----LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtH-dl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 468 ----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH-DFIMATYLADKVIVFE 542 (608)
T ss_dssp ----CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEECE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999987656788777655 5568899999999998
Q ss_pred C--CeEEEEcChhHHHH
Q 001228 419 E--GQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~--G~iv~~G~~~~~~~ 433 (1119)
+ |+++..|+++++..
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999988865
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.1e-29 Score=317.06 Aligned_cols=205 Identities=22% Similarity=0.294 Sum_probs=134.1
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHH---------------------HhHcCCCCC--Cee---EEEEEECCccC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTG--GYI---EGDIKISGYPK 933 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl---------------------~~L~g~~~~--g~~---~G~i~i~g~~~ 933 (1119)
..+|+||||+|++||++||+||||||||||+ +++.|...+ +.+ .+.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999997 566654332 112 35677777654
Q ss_pred ChhhhcceEEEEccCCC-------------------CCCCCCHHHHHHHHHHhhcCCCccHHHHH------HHHHHHHHH
Q 001228 934 NQETFARVSGYCEQNDI-------------------HSPYVTVYESLLYSAWLRLSSDVDTKKRK------MFVDEVMEL 988 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~-------------------~~~~~tv~e~l~~~~~l~~~~~~~~~~~~------~~~~~~l~~ 988 (1119)
... .++.+||++|... .++.+||+||+.+...+..... ...... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 1233455555432 2356899999987432221110 000000 111245888
Q ss_pred cCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001228 989 VELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065 (1119)
Q Consensus 989 ~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1065 (1119)
++|.+. .++.+ .+|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|+++.++|.|||+||||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 898764 46653 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHHhhceEeEEe-----cCcEEEEecCCC
Q 001228 1066 PSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1066 ~~~~~~~~~d~~l~l~-----~gG~v~~~g~~~ 1093 (1119)
++ ....||++++|. ++|++++.|+..
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 64 556799999993 468999999864
No 107
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=3e-29 Score=315.46 Aligned_cols=182 Identities=20% Similarity=0.286 Sum_probs=148.3
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCC-CCCCCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQND-IHSPYVT 956 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~-~~~~~~t 956 (1119)
+++.+|+||||+|++|+++||+|||||||||||++|+| | .| +|.+... ...++|++|+. ..++.+|
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag----G----~i--~g~~~~~---~~~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----G----QV--DGFPTQE---ECRTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH----T----CS--TTCCCTT---TSCEEETTCCCCCCCTTSB
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC----C----Cc--CCCcccc---ceeEEEEcccccccccCCc
Confidence 34579999999999999999999999999999999994 1 11 3433221 12368999875 5678899
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
|.|++.+ .. ... .+.+.++++.+++. +..++.+ .+||||||||++|||+|+.+|+||||||||+
T Consensus 513 v~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 513 VLDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp HHHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred HHHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 9999975 11 111 34578899999994 5666664 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-EecCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YAGPL 1092 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~g~~ 1092 (1119)
|||+.++..+++.|++ .|.|||++||+++ .+...||++++|.+ |+++ +.|+.
T Consensus 578 ~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp TCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 9999999999999998 5899999999975 46678999999975 6775 67764
No 108
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=4e-25 Score=275.65 Aligned_cols=106 Identities=26% Similarity=0.274 Sum_probs=92.8
Q ss_pred HHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 001228 319 DYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (1119)
Q Consensus 319 ~~~l~~lgL~~-~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p---~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~ 394 (1119)
..+++.+||.. ..+..+++ |||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++++ .|.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 899 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 899 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGG-----CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCchhh-----CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 56889999987 67777776 9999999999999999764 99999999999999999999999999976 478
Q ss_pred EEEEEEecCchhHHhhcCeEEEE------cCCeEEEEcChhHHH
Q 001228 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 395 t~ii~~~q~~~~~~~~~D~i~lL------~~G~iv~~G~~~~~~ 432 (1119)
|+|++.|+. .+ ...||+|++| ++|++++.|+++++.
T Consensus 900 TVIvisHdl-~~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECCCH-HH-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEEcCCH-HH-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 888777664 34 4789999999 789999999999875
No 109
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=2.1e-24 Score=271.74 Aligned_cols=109 Identities=25% Similarity=0.309 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 001228 317 VTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392 (1119)
Q Consensus 317 ~~~~~l~~lgL~~~-~dt~vg~~~~rGLSGGqkkRvsia~al~~~p---~illlDEPtsgLDs~~~~~i~~~l~~~~~~~ 392 (1119)
....+|+.+||... .+..+++ |||||||||.||++|+.+| ++|||||||+|||+.+...+++.|+++++ .
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~-----LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~ 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATT-----LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R 857 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTT-----CCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCchhhccCCccC-----CCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 34568899999753 3445544 9999999999999999865 79999999999999999999999999976 4
Q ss_pred CcEEEEEEecCchhHHhhcCeEEEE------cCCeEEEEcChhHHHH
Q 001228 393 DVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 393 ~~t~ii~~~q~~~~~~~~~D~i~lL------~~G~iv~~G~~~~~~~ 433 (1119)
|.|+|++.|+. ++...||+|++| ++|+++++|+++++.+
T Consensus 858 G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 858 GNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp TCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCEEEEEeCCH--HHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 78888776654 345679999999 8999999999999853
No 110
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=1.7e-24 Score=271.13 Aligned_cols=108 Identities=26% Similarity=0.263 Sum_probs=93.4
Q ss_pred HHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 001228 318 TDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (1119)
Q Consensus 318 ~~~~l~~lgL~~-~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p---~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~ 393 (1119)
...+++.+||.. ..+..+++ |||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|+++++ .|
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 916 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPT-----LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KG 916 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGG-----SCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcccccCcccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 356889999987 56777776 9999999999999999864 99999999999999999999999999976 47
Q ss_pred cEEEEEEecCchhHHhhcCeEEEE------cCCeEEEEcChhHHHH
Q 001228 394 VTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 394 ~t~ii~~~q~~~~~~~~~D~i~lL------~~G~iv~~G~~~~~~~ 433 (1119)
.|+|++.|+. .+ ...||+|++| ++|++++.|+++++..
T Consensus 917 ~TVIvisHdl-~~-i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 917 NTVIVIEHNL-DV-IKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp CEEEEECCCH-HH-HTTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CEEEEEcCCH-HH-HHhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 8888777664 34 4789999999 7899999999998754
No 111
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=1.1e-24 Score=257.04 Aligned_cols=203 Identities=17% Similarity=0.154 Sum_probs=140.0
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC------------------------------------CeeEE
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYIEG 924 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~------------------------------------g~~~G 924 (1119)
.+|++++++|.+| +++|+|+|||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 9999999999999999999653211 01157
Q ss_pred EEEECCccCChhh---hc-ceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-----------------------CCc----
Q 001228 925 DIKISGYPKNQET---FA-RVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-----------------------SDV---- 973 (1119)
Q Consensus 925 ~i~i~g~~~~~~~---~~-~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-----------------------~~~---- 973 (1119)
.+.++|.+.+... +. ..+++++|++.++.. +..+...|.-+.... ...
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999998876422 22 348999998766543 454444332111000 000
Q ss_pred ------------------------------cHHHHHHHHHHHHHHcCCCCcc----------------cc---ccCC---
Q 001228 974 ------------------------------DTKKRKMFVDEVMELVELKSLN----------------DS---MVGL--- 1001 (1119)
Q Consensus 974 ------------------------------~~~~~~~~~~~~l~~~~l~~~~----------------~~---~~~~--- 1001 (1119)
....-...+.+.++.+++.... +. ....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0000112344455555554310 00 0000
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhc
Q 001228 1002 ---PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1075 (1119)
Q Consensus 1002 ---~~~~~-LS~Gqrqrl~iA~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1075 (1119)
..+.. ||||||||++||++|+.+| +||||||||+|||+.+...|.+.|+++. +|+|||+|||++ ++...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 00112 7999999999999999999 9999999999999999999999999997 599999999996 4567899
Q ss_pred eEeEE----ecCcEEEEe
Q 001228 1076 ELLLL----KRGGRVIYA 1089 (1119)
Q Consensus 1076 ~~l~l----~~gG~v~~~ 1089 (1119)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 65 666554
No 112
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.1e-27 Score=277.59 Aligned_cols=186 Identities=12% Similarity=0.043 Sum_probs=146.0
Q ss_pred eceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-E-EEECCccCCCCcccceEEEeccCCC---CCCCCCH
Q 001228 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-K-ITYCGHELNEFVPQRTCAYISQHDL---HHGEMTV 262 (1119)
Q Consensus 188 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G-~-I~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 262 (1119)
.++|+.+++|++++|+||||||||||+++|+|.+.++ +| + |.++|. +++.++|++|+.. +.+.+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999875 89 8 999982 3567899999984 4566899
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+ |+......... ...+..+++.+||++..+ .. .
T Consensus 200 ~eni-~~~~~~~~~~~------------------------------------~~~~~~ll~~~gl~~~~~--~~-----~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL------------------------------------LHNKQPMVKNFGLERINE--NK-----D 235 (460)
T ss_dssp TCTT-CSCBCBSSCCS------------------------------------SCCBCCEECCCCSSSGGG--CH-----H
T ss_pred hhhh-cccccccCcch------------------------------------HHHHHHHHHHhCCCcccc--hh-----h
Confidence 9999 75432100000 001123566788887665 43 3
Q ss_pred CChHHHHHHHHHHH--HhcCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch-----hHHhh
Q 001228 343 ISGGQKKRVTTGEM--LVGTANV----LYMDE-ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP-----ETYDL 410 (1119)
Q Consensus 343 LSGGqkkRvsia~a--l~~~p~i----lllDE-PtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~-----~~~~~ 410 (1119)
|||||||||++|++ |+.+|++ ||||| ||++||+. ...+.+.++ ..+.|+|+++|++.. ++.++
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999998 444444444 347788888888752 55689
Q ss_pred cCe-----EEEEc-CCeEEEEcChhHHH
Q 001228 411 FDD-----IILLS-EGQIVYQGPRDNVL 432 (1119)
Q Consensus 411 ~D~-----i~lL~-~G~iv~~G~~~~~~ 432 (1119)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99987663
No 113
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.7e-27 Score=278.81 Aligned_cols=195 Identities=15% Similarity=0.082 Sum_probs=148.3
Q ss_pred ccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEE-E-EEECCccCChhhhcceEEEEccCCC---CCCCCCHH
Q 001228 884 HSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-D-IKISGYPKNQETFARVSGYCEQNDI---HSPYVTVY 958 (1119)
Q Consensus 884 ~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G-~-i~i~g~~~~~~~~~~~~gy~~q~~~---~~~~~tv~ 958 (1119)
.++|+++++|++++|+||||||||||+++|+|... +..| + |.++|. .++.++|++|+.. +.+.+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 48999999999999999999999999999999865 4578 8 999982 2467899999984 45567999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCe----EEEeC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1032 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~a--L~~~p~i----llLDE 1032 (1119)
||+ |+........ ..+.+.++++.+++.+..+ +.+|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~~-----~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGAT-----LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSCC-----SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCcc-----hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 988 6433211100 0112445677777776554 23799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc--H---HHHHhhce-----EeEEecCcEEEEecCCCCC----hH
Q 001228 1033 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LLLLKRGGRVIYAGPLGHE----SH 1097 (1119)
Q Consensus 1033 -PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~d~-----~l~l~~gG~v~~~g~~~~~----~~ 1097 (1119)
||++||+. ...+.++++++ |.|+|+++|+.+ . .....+|+ +++|.++|+++ .|+.... ..
T Consensus 268 pPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 66666666553 789999999976 3 34467899 99997356677 7765321 23
Q ss_pred HHHHHhh
Q 001228 1098 KLIEYFE 1104 (1119)
Q Consensus 1098 ~l~~~f~ 1104 (1119)
.+.+||.
T Consensus 343 ~i~~~f~ 349 (460)
T 2npi_A 343 SIREYFY 349 (460)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 4778885
No 114
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=4.4e-24 Score=266.77 Aligned_cols=108 Identities=22% Similarity=0.282 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 001228 317 VTDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGT---ANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392 (1119)
Q Consensus 317 ~~~~~l~~lgL~~-~~dt~vg~~~~rGLSGGqkkRvsia~al~~~---p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~ 392 (1119)
.+..+|+.+||.. ..+..+++ |||||||||.||++|+.+ |++|||||||+|||+.+...+.+.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATE-----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGG-----CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccCCccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 3567899999987 35777766 999999999999999996 799999999999999999999999999976 4
Q ss_pred CcEEEEEEecCchhHHhhcCeEEEE------cCCeEEEEcChhHHH
Q 001228 393 DVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 393 ~~t~ii~~~q~~~~~~~~~D~i~lL------~~G~iv~~G~~~~~~ 432 (1119)
|.|+|++.|+ ..++ ..||+|++| ++|++++.|+++++.
T Consensus 783 G~tVIvisHd-l~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GNTVIAVEHK-MQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TCEEEEECCC-HHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEEEcCC-HHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 7787777665 4456 889999999 799999999999874
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.89 E-value=2.6e-23 Score=245.33 Aligned_cols=236 Identities=15% Similarity=0.129 Sum_probs=150.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-----------------------------------CCcc
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----------------------------------LRAS 228 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~-----------------------------------~~~~ 228 (1119)
..+|+++|+.+.+| +++|+|||||||||||++|.+.+.+. ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 34799999999999 99999999999999999997765420 0126
Q ss_pred eEEEECCccCCCCcc----cceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC-c----hhHHhHHhhHHHHhcCCCCC--
Q 001228 229 GKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG-T----RYELLAELSRREKQAGIKPD-- 297 (1119)
Q Consensus 229 G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~-- 297 (1119)
|++.+||.+++.... ...+++++|++.++.. +..+...|.-...... . .+.......+..... .+..
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Confidence 889999998763221 2348999999876543 6665555532211000 0 000000000000000 0000
Q ss_pred ---------hhHHHHHHHHH-----------hhccchhhHHHHHHHHcCCcccc----------------cc---cccC-
Q 001228 298 ---------PEIDAFMKAVA-----------VAGQETSLVTDYVLKILGLDICA----------------DT---MVGD- 337 (1119)
Q Consensus 298 ---------~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 337 (1119)
...+.+.+... .........++..++.++++... +. .++.
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 00111100000 00111223455667777775411 00 1111
Q ss_pred -----ccCCC-CChHHHHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHh
Q 001228 338 -----EMRRG-ISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (1119)
Q Consensus 338 -----~~~rG-LSGGqkkRvsia~al~~~p--~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 409 (1119)
...+. +||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ +.|+|++.|.+ ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~--~~~vi~itH~~--~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEeCcH--HHHh
Confidence 00111 6999999999999999999 99999999999999999999999999873 78888888775 6678
Q ss_pred hcCeEEEE----cCCeEEEEc
Q 001228 410 LFDDIILL----SEGQIVYQG 426 (1119)
Q Consensus 410 ~~D~i~lL----~~G~iv~~G 426 (1119)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
No 116
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.88 E-value=1.6e-22 Score=233.69 Aligned_cols=82 Identities=24% Similarity=0.385 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 1004 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+.+||||||||++||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+|||+++ ....+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999964 57789999
Q ss_pred eEEecCcEEEE
Q 001228 1078 LLLKRGGRVIY 1088 (1119)
Q Consensus 1078 l~l~~gG~v~~ 1088 (1119)
++|.+ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99975 77764
No 117
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=7.1e-26 Score=240.58 Aligned_cols=145 Identities=15% Similarity=0.149 Sum_probs=98.5
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++++.+|+|| ++||+++|+||||||||||+++|+|. . +.+|+|............++.+||++|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 4456789996 89999999999999999999999998 5 23444421000011123456799999976
Q ss_pred HHHHH-HHHH----HhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 957 VYESL-LYSA----WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 957 v~e~l-~~~~----~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+||+ .+.. .+... .. .+.++++++. + | |||||++|||||+.+|+|||||
T Consensus 76 -~enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEe
Confidence 4444 2211 11100 00 1123444442 1 2 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
|||+| ++..+++.|+++ ++|+||| +|||++
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999 888999999988 6689999 999864
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.86 E-value=2.9e-23 Score=214.16 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=103.3
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCC-CCCHHHHHHH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSP-YVTVYESLLY 963 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~-~~tv~e~l~~ 963 (1119)
||||++++||+++|+||||||||||++++.+-.. . ++ ... ..|+++|++.... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~-----~d~---~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------IS-----SDF---CRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EE-----HHH---HHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------Ec-----cHH---HHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999774211 1 11 111 1256666543110 001111111
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH---
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1040 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~--- 1040 (1119)
...+.....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 64 -----------------~~~~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 -----------------YIVSKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HHHHHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HHHHHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 111122233444333332 347999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhce
Q 001228 1041 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076 (1119)
Q Consensus 1041 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1076 (1119)
....+++.++++.++|.|+|+++|+++ ....+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 558899999988777999999999853 4444443
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=6e-22 Score=225.47 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=73.8
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE--
Q 001228 1004 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 1077 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~-- 1077 (1119)
+..||+|||||++||++|+ .+|+||||||||++||+.....+.+.|+++. +|.|||+|||++ ++...+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEEE
Confidence 3579999999999999997 6899999999999999999999999999984 589999999996 356788986
Q ss_pred eEEecCcEEEEecCCC
Q 001228 1078 LLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1078 l~l~~gG~v~~~g~~~ 1093 (1119)
++|.+|...+....+.
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 7887766666655543
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.85 E-value=7.7e-21 Score=219.53 Aligned_cols=81 Identities=22% Similarity=0.433 Sum_probs=72.3
Q ss_pred CCCChHHHHHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~------~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.+ .|.|+|++.|++. ..+.+|++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCSCE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEE
Confidence 349999999999999999 79999999999999999999999999999875 4789888887753 47889999
Q ss_pred EEEcCCeEEE
Q 001228 415 ILLSEGQIVY 424 (1119)
Q Consensus 415 ~lL~~G~iv~ 424 (1119)
++|++|+++.
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999874
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.83 E-value=3.8e-23 Score=219.60 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=97.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--CCcccceEEEeccCCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFVPQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~~~~~~~~~yv~Q~d~~~~~ 259 (1119)
.++.+|+|| ++|++++|+|||||||||||++|+|. +|+ +|+|.. .++. ....++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~--~~~~~~~~~~~~~ig~v~q~~----- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSR--IILTRPAVEAGEKLGFLPGTL----- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSE--EEEEECSCCTTCCCCSSCC-------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeee--EEecCCchhhhcceEEecCCH-----
Confidence 446789996 89999999999999999999999999 775 777732 1111 112346799999975
Q ss_pred CCHHHHH-HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 260 MTVRETL-DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
+||+ .|.... ++ .+. ... ....++.+++. |
T Consensus 76 ---~enl~~~~~~~------~~---~~~------~~~------------------~~~~~~~~l~~-g------------ 106 (208)
T 3b85_A 76 ---NEKIDPYLRPL------HD---ALR------DMV------------------EPEVIPKLMEA-G------------ 106 (208)
T ss_dssp -------CTTTHHH------HH---HHT------TTS------------------CTTHHHHHHHT-T------------
T ss_pred ---HHHHHHHHHHH------HH---HHH------Hhc------------------cHHHHHHHHHh-C------------
Confidence 6666 342110 00 000 000 00122334432 2
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 403 (1119)
+ ||||||+||+||+.+|++|||||||+| ++..+.+.|+++ + .+.|+| +.|++
T Consensus 107 ----l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~ 158 (208)
T 3b85_A 107 ----I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDI 158 (208)
T ss_dssp ----S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC-
T ss_pred ----C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCH
Confidence 3 999999999999999999999999999 888889999887 3 367777 77764
No 122
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.83 E-value=8.4e-21 Score=215.97 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=70.1
Q ss_pred CCChHHHHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE--E
Q 001228 342 GISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI--I 415 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~----~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i--~ 415 (1119)
.|||||||||+||++|+ .+|++++|||||++||+..+..+.+.|+++.+ +.++|++.|.+ ++.+.+|++ +
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~tH~~--~~~~~~d~~~~v 294 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNK--IVMEAADLLHGV 294 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCT--TGGGGCSEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECCH--HHHhhCceEEEE
Confidence 39999999999999997 68999999999999999999999999998743 67888877764 678899987 7
Q ss_pred EEcCCeE-EEEcChhHH
Q 001228 416 LLSEGQI-VYQGPRDNV 431 (1119)
Q Consensus 416 lL~~G~i-v~~G~~~~~ 431 (1119)
+|.+|.. +.....++.
T Consensus 295 ~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 295 TMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EESSSCEEEEECCC---
T ss_pred EEeCCEEEEEEEEcchh
Confidence 8888755 444555543
No 123
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=3.8e-23 Score=240.13 Aligned_cols=171 Identities=16% Similarity=0.196 Sum_probs=134.4
Q ss_pred ceeeccceeeeeCCc--------------------EEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhc
Q 001228 880 LQLLHSVSGVFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA 939 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge--------------------~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~ 939 (1119)
..+|++||+++++|+ ++||+||||||||||+|+|+|... +.+|.|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 358999999999999 999999999999999999999765 34688888886542
Q ss_pred ceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH--HHHHHHH
Q 001228 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE--QRKRLTI 1017 (1119)
Q Consensus 940 ~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G--qrqrl~i 1017 (1119)
+ .+|++|++ .++.+|+.|++.++. . ...++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 467788888765431 0 12367889999887653222 28999 9999999
Q ss_pred HHHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CeEEEEecCccH-HHHHhhceE
Q 001228 1018 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG----RTVVCTIHQPSI-DIFEAFDEL 1077 (1119)
Q Consensus 1018 A~aL~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~~~-----~~g----~tvi~~~H~~~~-~~~~~~d~~ 1077 (1119)
|++|+. +|++++|||||+|||+.++..+++.|+++. +.| .+|++++|+.+. ++.+.+|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 322 678899998752 266677877
Q ss_pred e
Q 001228 1078 L 1078 (1119)
Q Consensus 1078 l 1078 (1119)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
No 124
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.82 E-value=5.3e-24 Score=226.81 Aligned_cols=184 Identities=13% Similarity=0.045 Sum_probs=117.4
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
...+++| .+|++||+++|+||||||||||+++|+|... .+.+.+.+.+.+.. ...++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 3457888 6999999999999999999999999999754 23333333333221 12345689999988777777776
Q ss_pred HHHHHHHHhhc---CCCccHHHHHHHHHHH------HHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 959 ESLLYSAWLRL---SSDVDTKKRKMFVDEV------MELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 959 e~l~~~~~l~~---~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
+++........ .......+.++.+.+. ++.+++....+.. +..|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHH
Confidence 66532211111 0012233333444444 4444554444444 23466 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1030 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1030 LDEPtsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
|||||+|+ |+..++.+++.++++.+ .|.|||+++|+++ ++...||++++|.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999974 5899999999986 5778899999986554
No 125
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=9.3e-23 Score=236.90 Aligned_cols=172 Identities=12% Similarity=0.094 Sum_probs=130.2
Q ss_pred cceeeeceEEEEeCCe--------------------EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc
Q 001228 183 SVRILKDVSGIVKPSR--------------------MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~ 242 (1119)
...+|+|||+.+++|+ +++|+||||||||||+|+|+|.++++ +|+|.++|.+.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t--- 108 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT--- 108 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---
Confidence 3568999999999999 99999999999999999999999887 899999997643
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHH
Q 001228 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (1119)
Q Consensus 243 ~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (1119)
+ .+|++|++ .++.+|+.||+.+... ...++.++
T Consensus 109 -~--~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L 141 (413)
T 1tq4_A 109 -M--ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYL 141 (413)
T ss_dssp -C--CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHH
T ss_pred -e--eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHH
Confidence 1 27899985 5778899998754210 01235577
Q ss_pred HHcCCcccccccccCccCCCCChH--HHHHHHHHHHHhc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001228 323 KILGLDICADTMVGDEMRRGISGG--QKKRVTTGEMLVG----------TANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (1119)
Q Consensus 323 ~~lgL~~~~dt~vg~~~~rGLSGG--qkkRvsia~al~~----------~p~illlDEPtsgLDs~~~~~i~~~l~~~~~ 390 (1119)
+.++|.+.. ..+ . +||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 142 ~~~~L~~~~-~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 142 EKMKFYEYD-FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp HHTTGGGCS-EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCccC-CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 788887643 222 1 8999 9999999999999 9999999999999999999999999988852
Q ss_pred ----hC----CcEEEEEEecCch-hHHhhcCeE
Q 001228 391 ----IL----DVTMIVALLQPAP-ETYDLFDDI 414 (1119)
Q Consensus 391 ----~~----~~t~ii~~~q~~~-~~~~~~D~i 414 (1119)
.. ..+++++.|.... .+.+++|+|
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 22 2345555544331 255555555
No 126
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.81 E-value=3.9e-23 Score=230.63 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=117.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
.++|+|+|+.|++|++++|+||||||||||+++|+|.+ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 46899999999999999999999999999999999997 5887 357788887776 4888
Q ss_pred H-HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 264 E-TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 264 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
| |+.|.... . . .....++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------------~-----------~------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------T-----------H------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------------C-----------H------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------------c-----------H------------------HHHHHHHHH-hHccCC---c----cC
Confidence 7 77653110 0 0 011223332 444444 2 35
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||| |||++.+|+||| ||+||+.+...+.. ++ |. .++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----lt------------H~-~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----LH------------SR-VQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----GT------------TT-EEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----Hh------------CC-HHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999887752 12 21 2345679999 9999999
Q ss_pred EEEcChhHHHHHHHhc
Q 001228 423 VYQGPRDNVLEFFEHM 438 (1119)
Q Consensus 423 v~~G~~~~~~~~f~~~ 438 (1119)
++.|+++++..+|..+
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999997666654
No 127
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.81 E-value=3.6e-21 Score=199.52 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCcc
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVD 974 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~ 974 (1119)
+++|+||||||||||+++|+|.... ...|.. . .+......++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~-~--~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~----- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFW-T--EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF----- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEE-E--EEEC------CCEEEEEET------TCCEEE-E-EETTC-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEE-h--hhhccccccceeEEEeecC------cHHHHH-H-HhhcC-----
Confidence 5899999999999999999996531 122321 1 0111012346789999975 222222 1 00000
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHH-----HhcCCCeEEEeC--CCCCCCHHHHHHHHH
Q 001228 975 TKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAIVMR 1047 (1119)
Q Consensus 975 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~a-----L~~~p~illLDE--PtsgLD~~~~~~i~~ 1047 (1119)
.-.+..++. +..||+|||||++||++ |+.+|++|+||| ||++||+...+.+.+
T Consensus 65 ---------------~~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 65 ---------------TSKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp ---------------CCSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred ---------------Ccccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 000122333 34699999999999996 999999999999 999999999999998
Q ss_pred HHHHHHhCCCeEEEEec---CccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1048 TVRNTVDTGRTVVCTIH---QPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1048 ~l~~~~~~g~tvi~~~H---~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
.+++ .+.|+|+++| +.+ .+...+|+ .+|++++..+
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 8876 4677888886 543 34455676 4567766443
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.81 E-value=7e-21 Score=196.31 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=54.0
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhCCcEEEEEEecC
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS----------------TTFQICKFLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~----------------~~~~i~~~l~~~~~~~~~t~ii~~~q~ 403 (1119)
.||||||||+||+++..+|++++|||||++||+. ...++.+.++++.+. |.|+|+++|.+
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 6999999999999999999999999999999999 558888998888765 88888887764
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.80 E-value=4e-21 Score=199.15 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=102.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCch
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 278 (1119)
.++|+||||||||||+++|+|.+. +.+.|... .+......++.++|++|+. |+.+++ ++ +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~----- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SKF----- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ETT-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hhc-----
Confidence 579999999999999999999984 22334321 1111002245789999975 332332 10 000
Q ss_pred hHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHH--
Q 001228 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM-- 356 (1119)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~a-- 356 (1119)
. .-++..+..+++ ||||||||++||++
T Consensus 64 ---------------~-------------------------------~~~~~~~~~~~~-----lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 64 ---------------F-------------------------------TSKKLVGSYGVN-----VQYFEELAIPILERAY 92 (178)
T ss_dssp ---------------C-------------------------------CCSSEETTEEEC-----HHHHHHHHHHHHHHHH
T ss_pred ---------------C-------------------------------CccccccccccC-----cCHHHHHHHHHHhhcc
Confidence 0 000123344444 99999999999996
Q ss_pred ---HhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe--cCchhHHhhcCeEEEEcCCeEEE
Q 001228 357 ---LVGTANVLYMDE--ISTGLDSSTTFQICKFLKQMVHILDVTMIVALL--QPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 357 ---l~~~p~illlDE--PtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~--q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
++.+|++++||| ||++||+.....+.+.+++ .+.|+++++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999988875 3567888887 677778888887 4566654
No 130
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.78 E-value=1.7e-20 Score=210.55 Aligned_cols=175 Identities=14% Similarity=0.205 Sum_probs=133.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------c--cceEEEeccCCC-C
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------P--QRTCAYISQHDL-H 256 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~--~~~~~yv~Q~d~-~ 256 (1119)
++++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... . +..++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45789999999999999999999999999999999876 899999998764321 1 235999999988 8
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
+|.+||+|++.++... +. + ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~~-~~---------------------d---------------------~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY---------------------D---------------------VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC---------------------S---------------------EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHc-CC---------------------c---------------------chHHhcCCCCcchhHHHH
Confidence 8889999999875210 00 0 013456788777777777
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc--------hh
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--------PE 406 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~--illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~--------~~ 406 (1119)
+ || |||++||++++.+|+ +|+|| ||+|||+... ++++.+..+.|+++.+|-+. .-
T Consensus 204 e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 204 E-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp H-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred H-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 6 99 999999999999999 99999 9999998754 24444445788888877322 22
Q ss_pred HHhhcCeEEEEcCCeE
Q 001228 407 TYDLFDDIILLSEGQI 422 (1119)
Q Consensus 407 ~~~~~D~i~lL~~G~i 422 (1119)
.....+.|..+..|+.
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 3345668888888864
No 131
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.76 E-value=2.2e-20 Score=206.51 Aligned_cols=146 Identities=14% Similarity=0.224 Sum_probs=91.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCch
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 278 (1119)
.++|+||||||||||+++|+|...++ +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47899999999999999999999886 89999999887655455789999999999999999999988654321100
Q ss_pred hHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHh
Q 001228 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358 (1119)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~ 358 (1119)
...+..+ +. ....+..+++ |||||||||++||+++
T Consensus 80 ------------------~~~i~~~------------------~~----~~~~~~~~~~-----LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 ------------------WEPIEKY------------------IN----EQYEKFLKEE-----VNIARKKRIPDTRVHC 114 (270)
T ss_dssp ------------------SHHHHHH------------------HH----HHHHHHHHHH-----SCTTCCSSCCCCSCCE
T ss_pred ------------------HHHHHHH------------------HH----HHHHhhhHHh-----cCcccchhhhhheeee
Confidence 0001111 10 1223344444 9999999999999987
Q ss_pred cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 001228 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (1119)
Q Consensus 359 ~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q 402 (1119)
. ++|||||+.|||+.. .+.++.+.+. .++|++++.
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi~K 149 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVIAK 149 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEETT
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEEec
Confidence 5 999999999999976 3445555432 677776654
No 132
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.76 E-value=3.5e-20 Score=207.98 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=126.0
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hh--cceEEEEccCCC-CC
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TF--ARVSGYCEQNDI-HS 952 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~--~~~~gy~~q~~~-~~ 952 (1119)
++++|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 457899999999999999999999999999999654 2358999999876431 12 236899999988 88
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEE
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1030 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illL 1030 (1119)
+..|++|++.+... + ..+ ..+++.+|+.+..+... .+|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~-~~d----------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T-TCS----------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c-CCc----------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999987532 1 111 12455667766555553 3689 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCcc-------HHHH-HhhceEeEEecC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS-------IDIF-EAFDELLLLKRG 1083 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~-------~~~~-~~~d~~l~l~~g 1083 (1119)
| ||+|||+.+.. +++. +.|.|+|++||... +.+. ...+.+..+..|
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCC
Confidence 9 99999998652 3444 35899999999321 1122 234567777653
No 133
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.75 E-value=2.4e-22 Score=224.29 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=115.0
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
|.|+|+++.++ ..+|++||++|++|++++|+||||||||||+++|+|.. +|.|
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I-------- 154 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV-------- 154 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE--------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE--------
Confidence 56677765442 24899999999999999999999999999999999975 3555
Q ss_pred hhhhcceEEEEccCCCCCCCCCHHH-HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 935 QETFARVSGYCEQNDIHSPYVTVYE-SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 935 ~~~~~~~~gy~~q~~~~~~~~tv~e-~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
++|++|++.++. .|++| |+.|.. +... .+++.++.+ |.+..+ +..|||||||
T Consensus 155 -------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQ 207 (305)
T 2v9p_A 155 -------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKH 207 (305)
T ss_dssp -------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSS
T ss_pred -------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHH
Confidence 345677666554 35655 554421 1111 245556553 333222 2479999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
| ||||+++|+||| ||+||+.++..|+. ++|+++ ....+|++ +|. +|++++.|+.
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~ 261 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITD 261 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCH
Confidence 9 999999999999 99999999988862 189875 45789999 886 5899988874
No 134
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.74 E-value=1.1e-20 Score=208.99 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCcc
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVD 974 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~ 974 (1119)
.+||+||||||||||+++|+|... +..|+|.++|.++.....++.++|++|++.+++.+||.|++.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-NC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-TC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-HH-
Confidence 489999999999999999999765 45799999998776555567899999999999999999999886533211 11
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001228 975 TKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054 (1119)
Q Consensus 975 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1054 (1119)
.+ .+.+.++ ..+.+... ..||+|||||++|||+++. ++|||||++|||+.. .++++.+.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1222222 22233332 3699999999999999886 999999999999987 345556655
Q ss_pred CCCeEEEEecCcc
Q 001228 1055 TGRTVVCTIHQPS 1067 (1119)
Q Consensus 1055 ~g~tvi~~~H~~~ 1067 (1119)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999998743
No 135
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.74 E-value=2.4e-19 Score=203.90 Aligned_cols=131 Identities=18% Similarity=0.118 Sum_probs=103.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
.+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+.... ..++.+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe-------------
Confidence 379999999999999999999999999999999997653 479999998642110 0112222221
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
+ +||+||++||+||..+|++|+|||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..+++.|+.+...+.|+|+|+|+++ ....+|++++|.+|
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 2356777776543458999999976 66789999999864
No 136
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=1.4e-19 Score=206.83 Aligned_cols=174 Identities=14% Similarity=0.217 Sum_probs=133.7
Q ss_pred eceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---------ccceEEEeccCCC-CC
Q 001228 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQHDL-HH 257 (1119)
Q Consensus 188 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 257 (1119)
+++|+.+++|++++|+||||||||||++.|+|.+++. +|+|.++|.+..... .+..++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999999876 899999998764321 1245999999988 88
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
|.+||+|++.++... +. + ..+++.+|+.+..+..+++
T Consensus 225 p~~tv~e~l~~~~~~-~~---------------------d---------------------~~lldt~Gl~~~~~~~~~e 261 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY---------------------D---------------------VVLCDTSGRLHTNYSLMEE 261 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC---------------------S---------------------EEEEECCCCSSCCHHHHHH
T ss_pred hhhhHHHHHHHHHhC-CC---------------------H---------------------HHHHHhcCCChhhhhHHHH
Confidence 889999999875320 00 0 0134567887777777766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc--------hhH
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--------PET 407 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~--illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~--------~~~ 407 (1119)
|| |||++||++++.+|+ +|+|| ||+|||+..+. +.+.+..+.|+|+.+|-+. .-.
T Consensus 262 -----LS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~ 326 (359)
T 2og2_A 262 -----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVV 326 (359)
T ss_dssp -----HH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHH
T ss_pred -----HH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHH
Confidence 99 999999999999999 99999 99999987653 3444445788888877321 223
Q ss_pred HhhcCeEEEEcCCeE
Q 001228 408 YDLFDDIILLSEGQI 422 (1119)
Q Consensus 408 ~~~~D~i~lL~~G~i 422 (1119)
....+.|..+..|+.
T Consensus 327 ~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 327 EELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHCCCEEEEECSSS
T ss_pred HHhCCCEEEEeCCCC
Confidence 345677888877753
No 137
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.74 E-value=2.8e-22 Score=215.19 Aligned_cols=177 Identities=11% Similarity=-0.014 Sum_probs=110.7
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCCCCCCCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~~~~~~t 956 (1119)
.-|+||||+|++|++++|+||||||||||+++|+|... |.|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 36999999999999999999999999999999999652 56777 654311 123456899999765443222
Q ss_pred H-HHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHH-----HHHHhcCCCeEE
Q 001228 957 V-YESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIF 1029 (1119)
Q Consensus 957 v-~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~i-----A~aL~~~p~ill 1029 (1119)
. .+++. ...+..+ .... ...++++++...+. +.+ .+|||||+||++| +++++.+|++++
T Consensus 85 ~~~~~l~-~~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLE-YDNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEE-EEEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhh-hhhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 01110 0001111 0111 12356666654321 111 2589999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-------CCCeEEEEecCccHHHHHhhceEe
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
|||||+++|..+...|.+.+.+... .+.+.|+++|+++ +....+++++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 9999999999999999988887643 3566777777754 4555555554
No 138
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.74 E-value=1.4e-17 Score=190.72 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=68.6
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 1004 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 1004 ~~~LS~Gqrq------rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+..||||||| |+++|++|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||+|||++ ++...||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4579999999 67788888899999999999999999999999999999877789999999995 467889999
Q ss_pred eEEe
Q 001228 1078 LLLK 1081 (1119)
Q Consensus 1078 l~l~ 1081 (1119)
+.|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
No 139
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.73 E-value=1.9e-19 Score=205.58 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=119.1
Q ss_pred ccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hh--cceEEEEccCCC-CCC
Q 001228 884 HSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TF--ARVSGYCEQNDI-HSP 953 (1119)
Q Consensus 884 ~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~--~~~~gy~~q~~~-~~~ 953 (1119)
+.+|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788999999999999999999999999999754 2358999999876421 12 346899999988 888
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEe
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1031 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illLD 1031 (1119)
..|++|++.+... + ..+ ..+++.+|+.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~-~~d----------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T-TCS----------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C-CCH----------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999987532 1 111 12455667766655553 3689 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1065 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1065 (1119)
||+|||+.+.. +++. ..|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998653 3443 348999999993
No 140
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.73 E-value=1.2e-19 Score=213.49 Aligned_cols=184 Identities=15% Similarity=0.089 Sum_probs=139.5
Q ss_pred ccccccccc-cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc---cCCh--------hh
Q 001228 870 MKTEGVGED-RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKNQ--------ET 937 (1119)
Q Consensus 870 ~~~~~~~~~-~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~---~~~~--------~~ 937 (1119)
.++..+.++ +..+|+++ |.|.+|++++|+|+||||||||+++|+|...+ ..|.|.++|. +... ..
T Consensus 134 ~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~ 210 (438)
T 2dpy_A 134 RTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDG 210 (438)
T ss_dssp SCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHH
T ss_pred EeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccc
Confidence 344444444 45699999 99999999999999999999999999997663 4799999997 3321 23
Q ss_pred hcceEEEEccC-CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHH
Q 001228 938 FARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016 (1119)
Q Consensus 938 ~~~~~gy~~q~-~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~ 1016 (1119)
.++.++|++|+ +..++.+++.+++.+.+....... -....+.+. ...||+|| ||++
T Consensus 211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~----------------~~v~~~ld~------l~~lS~g~-qrvs 267 (438)
T 2dpy_A 211 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG----------------QHVLLIMDS------LTRYAMAQ-REIA 267 (438)
T ss_dssp HHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT----------------CEEEEEEEC------HHHHHHHH-HHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC----------------CCHHHHHHh------HHHHHHHH-HHHH
Confidence 56789999995 445667889998887654321000 000111122 24699999 9999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----eEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1017 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1017 iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
|| +.+|++ |+|||+.+...+.+++.++.+ + |. ||++++||++ ...+|++++|.+ |+++
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Iv 334 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIV 334 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEE
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEE
Confidence 99 889998 999999999999999999865 3 64 9999999986 456899999974 8999
Q ss_pred EecCC
Q 001228 1088 YAGPL 1092 (1119)
Q Consensus 1088 ~~g~~ 1092 (1119)
..|++
T Consensus 335 l~~~~ 339 (438)
T 2dpy_A 335 LSRRL 339 (438)
T ss_dssp ECHHH
T ss_pred EeCCH
Confidence 88764
No 141
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.71 E-value=2.4e-17 Score=188.66 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=70.5
Q ss_pred CCChHHHHHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 342 GISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~---------~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
.+|||||||++||++|+ ++|+||||||||++||+..+..+++.++++. .|+|++ +|+. + .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~-th~~-~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTG-TELA-P---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEE-SSCC-T---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEE-Eecc-c---cCC
Confidence 59999999999999999 8999999999999999999999999998752 455544 4443 3 899
Q ss_pred eEEEEcCCeEEEEcChhHH
Q 001228 413 DIILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~ 431 (1119)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999998765
No 142
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=5.7e-20 Score=216.26 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=137.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc---cCCCC--------cccceEEEec
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH---ELNEF--------VPQRTCAYIS 251 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~~~--------~~~~~~~yv~ 251 (1119)
...+|+++ +.+.+|++++|+|||||||||||++|+|..+++ +|.|.++|+ ++.++ ..++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 45699999 999999999999999999999999999999887 899999998 44332 1346899999
Q ss_pred cC-CCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc
Q 001228 252 QH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (1119)
Q Consensus 252 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 330 (1119)
|+ +..++.+||.+|+.+.++.... .. .+ ++. .
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~---------------------v~~------~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG------QH---------------------VLL------I 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CE---------------------EEE------E
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CC---------------------HHH------H
Confidence 95 5567788999999875432100 00 00 000 0
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH---hCCc-----EEEEEEec
Q 001228 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH---ILDV-----TMIVALLQ 402 (1119)
Q Consensus 331 ~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~---~~~~-----t~ii~~~q 402 (1119)
.|. + ..+|||| |||+|| +++|++ |+|||+.+...+.+.++++.+ ..|. |+++..|+
T Consensus 253 ld~-l-----~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MDS-L-----TRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EEC-H-----HHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HHh-H-----HHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 111 1 2389999 999999 888887 999999999999999998765 2243 56665555
Q ss_pred CchhHHhhcCeEEEEcCCeEEEEcChhHH
Q 001228 403 PAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 403 ~~~~~~~~~D~i~lL~~G~iv~~G~~~~~ 431 (1119)
.. ..++|++++|.+|+++..|++.++
T Consensus 317 l~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 44 567999999999999999988765
No 143
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.71 E-value=3.1e-21 Score=207.08 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=105.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 260 (1119)
.-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.+.+...+ ++.++|++|++..|+.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4699999999999999999999999999999999987 3 78888 776543222 35689999987655443
Q ss_pred C-HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 261 T-VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 261 T-V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+ +.+++.+. ...+ ..|.. + ...++.+++...+ ..+.
T Consensus 84 ~~~~~~l~~~-~~~~--~~~g~--------------~------------------~~~i~~~l~~~~~-----~il~--- 120 (218)
T 1z6g_A 84 LKNEDFLEYD-NYAN--NFYGT--------------L------------------KSEYDKAKEQNKI-----CLFE--- 120 (218)
T ss_dssp HHTTCEEEEE-EETT--EEEEE--------------E------------------HHHHHHHHHTTCE-----EEEE---
T ss_pred hhccchhhhh-hccc--ccCCC--------------c------------------HHHHHHHHhCCCc-----EEEE---
Confidence 2 11111110 0000 00000 0 0012233333221 1111
Q ss_pred CCCCChHHHHHHHH-----HHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 340 RRGISGGQKKRVTT-----GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 340 ~rGLSGGqkkRvsi-----a~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|++.... .| +.| ...||.|
T Consensus 121 -~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~~d~i 188 (218)
T 1z6g_A 121 -MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLNFNLS 188 (218)
T ss_dssp -ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSCCSEE
T ss_pred -ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccCCCEE
Confidence 2389999999999 88999999999999999999999999998888876543 22 111 2467887
Q ss_pred EEEcC
Q 001228 415 ILLSE 419 (1119)
Q Consensus 415 ~lL~~ 419 (1119)
+++++
T Consensus 189 iv~~~ 193 (218)
T 1z6g_A 189 IINDD 193 (218)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 77653
No 144
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.71 E-value=2.5e-17 Score=188.46 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhce
Q 001228 1006 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1076 (1119)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998863 799999994 3 2 7899
Q ss_pred EeEEecCcEEEEecCCC
Q 001228 1077 LLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1077 ~l~l~~gG~v~~~g~~~ 1093 (1119)
+++|.+ |+++..|+..
T Consensus 337 i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEET-TEEEECCCTT
T ss_pred EEEEEC-CEEEecCCHH
Confidence 999975 8999988764
No 145
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.70 E-value=7.6e-21 Score=202.35 Aligned_cols=184 Identities=10% Similarity=0.060 Sum_probs=113.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
.++|+| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 69999999999999999999999999999852 23322222222111 1235689999998888888888
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHH------HHHcCCcccccccccC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV------LKILGLDICADTMVGD 337 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 337 (1119)
|++.+.....+....+... +. ++ ...++.. ++.+|+.+..+..++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~----~~----------~~--------------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 134 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTL----AQ----------PV--------------RAAAATGVPVLIEVDLAGARAIKKTMPEA 134 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEE----HH----------HH--------------HHHHHHTCCEEEECCHHHHHHHHHHCTTS
T ss_pred CCceeehhhcCchhhcCCc----HH----------HH--------------HHHHHcCCeEEEEeCHHHHHHHHHhcCCc
Confidence 8764322111100000000 00 00 0011111 3344444444554443
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGL----DSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgL----Ds~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
|| +|+.+|++++|||||+|+ |+..+..+.+.++++.+..+.|++++. |...++..+||+
T Consensus 135 -----lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vt-Hdl~~~~~~~d~ 197 (207)
T 1znw_A 135 -----VT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVN-RRLESACAELVS 197 (207)
T ss_dssp -----EE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEEC-SSHHHHHHHHHH
T ss_pred -----EE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEEC-CCHHHHHHHHHH
Confidence 66 889999999999999998 788999999999998765577777765 556799999999
Q ss_pred EEEEc
Q 001228 414 IILLS 418 (1119)
Q Consensus 414 i~lL~ 418 (1119)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
No 146
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.70 E-value=3.7e-18 Score=191.88 Aligned_cols=182 Identities=17% Similarity=0.156 Sum_probs=114.4
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEE-EEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G-~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
.+|+++++.+++|++++|+|+||||||||++.|+|.... ..| .+.+.+.+.....+++++.++.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 479999999999999999999999999999999985431 124 45443333333333333333333221 12223
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH-HHHHHHHHHHhcCCCeEEEeCCCC---
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 1035 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq-rqrl~iA~aL~~~p~illLDEPts--- 1035 (1119)
++.... + ...+..+.++++++..++. +.+. +..+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 333221 1 1111222333443322221 1111 13588998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCeEEEEecCcc-H--------------------HHHHhhceEeEEecC
Q 001228 1036 G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1036 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~~d~~l~l~~g 1083 (1119)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...||++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 565 6778899999998754 999999999951 1 356689999999864
No 147
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.69 E-value=3.7e-19 Score=200.53 Aligned_cols=128 Identities=9% Similarity=0.010 Sum_probs=97.3
Q ss_pred ceEE-EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHH
Q 001228 189 DVSG-IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 189 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
|+|. .+++|++++|+||||||||||+++|+|.+++. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 3444 37899999999999999999999999999774 332 358999999999988 9999985
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1119)
+... .+.... .+ .......++.++ ....++.+.. +||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~~~~-----lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYACAPV-----YSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEEEEE-----EETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCCccc-----CChhh
Confidence 5211 111000 00 112345666676 4444566665 99999
Q ss_pred HHHHHHHHHHhcCCcEeEEeCCCCCCCH
Q 001228 348 KKRVTTGEMLVGTANVLYMDEISTGLDS 375 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEPtsgLDs 375 (1119)
+|||++|++++.+|+|+|||||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 148
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.68 E-value=3e-16 Score=179.67 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=65.7
Q ss_pred CCCChHHHH------HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKK------RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkk------Rvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..||||||| |+++|++++.+|++|||||||+|||+..+..+++.|+++... +.|++++.|+ +++.+.||++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~--~~~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHD--EELKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESC--GGGGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECh--HHHHHhCCEE
Confidence 349999999 677888889999999999999999999999999999998654 6788888776 4678999999
Q ss_pred EEEc
Q 001228 415 ILLS 418 (1119)
Q Consensus 415 ~lL~ 418 (1119)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 149
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.68 E-value=1.1e-17 Score=188.03 Aligned_cols=187 Identities=14% Similarity=0.079 Sum_probs=114.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-EEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
..++|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|.. .++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~----~~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRV----RLR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTC----CGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCC----Chh
Confidence 345899999999999999999999999999999999998764 46 5655432221100001111111110 011
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
+.+++... .+. ..+.....+.+++..++. .+...+
T Consensus 94 ~~~~l~~~--------------~~~------------------------~~~~~~~~~~~l~~~~l~--i~~~~~----- 128 (296)
T 1cr0_A 94 QSDSLKRE--------------IIE------------------------NGKFDQWFDELFGNDTFH--LYDSFA----- 128 (296)
T ss_dssp GCHHHHHH--------------HHH------------------------HTHHHHHHHHHHSSSCEE--EECCCC-----
T ss_pred hccccccC--------------CCC------------------------HHHHHHHHHHHhccCCEE--EECCCC-----
Confidence 11122110 000 000111223333322221 111112
Q ss_pred CCChHH-HHHHHHHHHHhcCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHHhCCcEEEEEEecC-ch-------
Q 001228 342 GISGGQ-KKRVTTGEMLVGTANVLYMDEIST---G---LDS-STTFQICKFLKQMVHILDVTMIVALLQP-AP------- 405 (1119)
Q Consensus 342 GLSGGq-kkRvsia~al~~~p~illlDEPts---g---LDs-~~~~~i~~~l~~~~~~~~~t~ii~~~q~-~~------- 405 (1119)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.|+|++.|.. ..
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 388888 67777 999999999999999999 5 555 6678899999999887788888887775 23
Q ss_pred -------------hHHhhcCeEEEEcCCeE
Q 001228 406 -------------ETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 406 -------------~~~~~~D~i~lL~~G~i 422 (1119)
.+.++||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 150
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.67 E-value=8.2e-18 Score=191.32 Aligned_cols=133 Identities=15% Similarity=0.199 Sum_probs=102.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
+++++|+.+++|++++|+|||||||||||++|+|.++|+ +|.|+++|.+ +... ++ + . +.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~~-------~~---~-~-----~~ 218 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIVF-------KH---H-K-----NY 218 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCCC-------SS---C-S-----SE
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--cccc-------cc---c-h-----hE
Confidence 799999999999999999999999999999999999986 8999998853 1100 00 0 0 00
Q ss_pred HHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCCh
Q 001228 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (1119)
Q Consensus 266 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSG 345 (1119)
+ + .+ .| |
T Consensus 219 i-----------------------------------------------------------~-------~~-----~g--g 225 (330)
T 2pt7_A 219 T-----------------------------------------------------------Q-------LF-----FG--G 225 (330)
T ss_dssp E-----------------------------------------------------------E-------EE-----CB--T
T ss_pred E-----------------------------------------------------------E-------EE-----eC--C
Confidence 0 0 00 01 8
Q ss_pred HHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 346 GqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
||+||++||+||..+|++++|||||+. ++.+.|+.+.. .+.|+++++|.++ +.+.+|++++|.+|..
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 35566766643 2346888888765 7788999999988753
No 151
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.66 E-value=6.3e-18 Score=216.86 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=117.9
Q ss_pred ceeeccceeeeeC-------CcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEE-EEccCCCC
Q 001228 880 LQLLHSVSGVFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSG-YCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~-------Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~g-y~~q~~~~ 951 (1119)
..+++||+|.+++ |++++|+|||||||||||++| |.... ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC-
Confidence 4699999999987 999999999999999999999 86430 12344 8998753
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
.++|.|++.. + +++.+.... +.+.+|+|+++ +++|++++.+|+++|||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 3455444411 1 111111111 13468887775 99999999999999999
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE--EecCCCC-ChHHHHHHhhhh
Q 001228 1032 EPTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI--YAGPLGH-ESHKLIEYFEVS 1106 (1119)
Q Consensus 1032 EPtsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~--~~g~~~~-~~~~l~~~f~~~ 1106 (1119)
|||+|+|+.. ...++.+++.+.++ |+++|++||+++ .....+|++.++. |++. +.|+... ..+.+...|+ -
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~~~~~~~~~l~~ly~-l 951 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENECEDPSQETITFLYK-F 951 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC-------------CEEEE-E
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecCcccCCCCceEEEee-e
Confidence 9999999987 56688999999876 999999999964 3445678888763 6766 4444321 1223444455 4
Q ss_pred cCCCc
Q 001228 1107 IPFFP 1111 (1119)
Q Consensus 1107 i~g~~ 1111 (1119)
.+|++
T Consensus 952 ~~G~~ 956 (1022)
T 2o8b_B 952 IKGAC 956 (1022)
T ss_dssp ESSCC
T ss_pred cCCCC
Confidence 56654
No 152
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.65 E-value=1.1e-17 Score=182.60 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=104.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
..+++|+|+|+++++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3456999999999999999999999999999999999976 333333 1345799999985 677899
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
+.|++.+.......... + ..+.+ .....++. |.+..+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~-~----------------~~~~~---------------~~~~~L~~--l~~~~~~~~~~---- 116 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP-D----------------AFDND---------------LMHRTLKN--IVEGKTVEVPT---- 116 (245)
T ss_dssp HHHHHHHHTTCCCTTSG-G----------------GBCHH---------------HHHHHHHH--HHTTCCEEECC----
T ss_pred HhHhhhhhccCCCCCCc-c----------------cccHH---------------HHHHHHHH--HHCCCCeeccc----
Confidence 99998764332110000 0 00000 01122222 23445556655
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
+|+||+||+.+ ++++.+|++++||||....|.. +.+ ..+.+++++.|......-.+++++ .+|+
T Consensus 117 -ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~---~~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 117 -YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRD---MFHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp -EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHT---TCSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred -ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHH---hcCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 99999999988 5788899999999998888763 122 236677776654322222334444 5564
Q ss_pred EEEEcChhHHHHH
Q 001228 422 IVYQGPRDNVLEF 434 (1119)
Q Consensus 422 iv~~G~~~~~~~~ 434 (1119)
+.+++.+.
T Consensus 181 -----~~e~~~~~ 188 (245)
T 2jeo_A 181 -----DLEQILTQ 188 (245)
T ss_dssp -----CHHHHHHH
T ss_pred -----CHHHHHHH
Confidence 55666543
No 153
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.65 E-value=1.6e-16 Score=192.25 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=67.9
Q ss_pred CCC-ChHHHHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 341 RGI-SGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 341 rGL-SGGqkkRvsia~al~~~p--~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ +.|+|++.|.| ++...||++++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~~~ 470 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHYKV 470 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEE
Confidence 347 999999999999999999 99999999999999999999999999976 67888888774 466789999999
Q ss_pred cCC
Q 001228 418 SEG 420 (1119)
Q Consensus 418 ~~G 420 (1119)
.+|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 154
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.64 E-value=4.4e-16 Score=155.72 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHH------HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 1004 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA------~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||++ +....||++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 457999999999876 899999999999999999999999999999999877799999999996 356789999
Q ss_pred eEEe
Q 001228 1078 LLLK 1081 (1119)
Q Consensus 1078 l~l~ 1081 (1119)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
No 155
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.63 E-value=1.2e-18 Score=196.32 Aligned_cols=156 Identities=10% Similarity=-0.003 Sum_probs=108.8
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhc
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRL 969 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~ 969 (1119)
+++|+++||+||||||||||+++|+|...+ . +|. +.++|++|++.+++. |++|++.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 899999999999999999999999996542 1 121 358999999998888 99999854211
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 001228 970 SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049 (1119)
Q Consensus 970 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l 1049 (1119)
.+.......+.+.++++.++ .+..+..+ ..||+||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 11122222344677888877 44443332 3699999999999999999999999999999998521 112
Q ss_pred HHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1050 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1050 ~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
.++. + .+|++.|+.+.......+|.+.+
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~ 242 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAM 242 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHH
Confidence 2322 3 34666776543333445565554
No 156
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.63 E-value=2.9e-17 Score=187.53 Aligned_cols=176 Identities=14% Similarity=0.162 Sum_probs=122.3
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC----------hhhhcceEEEEccC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN----------QETFARVSGYCEQN 948 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~----------~~~~~~~~gy~~q~ 948 (1119)
+..+|+++ |.|.+||++||+|+||||||||+++|+|...+ ..|.+.+.|.+.. ...+.+.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 45699999 99999999999999999999999999997664 3688888886421 11234567788775
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
+. +..+.+.-... ...+.+.+...+ .+.... ...+..||+|| ||+++| +.+|++
T Consensus 135 ~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~---ld~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 135 DR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLM---MDSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp TS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEE---EETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred CC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHH---HhhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 42 22222211000 000111111111 010000 01134699999 899999 688887
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----eEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+|||+.....+.++++++.+ .|. ||++++||++ ...||+++++.+ |+++.++++
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999864 477 9999999986 356899999975 899988764
No 157
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.63 E-value=1.1e-17 Score=182.64 Aligned_cols=155 Identities=9% Similarity=-0.012 Sum_probs=97.8
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCH
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3456999999999999999999999999999999999843 112222 2456799999985 6678899
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
.|++.+........+. .....+.+.+.++.+ .+..+.. +..||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHP-DAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTSG-GGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCCc-ccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 9998764322111111 111112234444433 2223333 24699999999988 5888899999999999888
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1065 (1119)
|.. +.++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 864 2222 37899999996
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.63 E-value=1.9e-17 Score=180.68 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=103.1
Q ss_pred eccce-eeeeCCcEEEEEcCCCCCHHHHHHhHc--CC-CCCCeeEEEEEECCccCChh--hhcceEEEEccCCCCCCCCC
Q 001228 883 LHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLA--GR-KTGGYIEGDIKISGYPKNQE--TFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 883 L~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~--g~-~~~g~~~G~i~i~g~~~~~~--~~~~~~gy~~q~~~~~~~~t 956 (1119)
|+++- +.|++|++++|+||||||||||+++|+ |. ..+ .|.+.+++...... ...+.+||.+|+....+.++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 44442 489999999999999999999999999 55 322 45566666543211 12233555555432222223
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
+.++....... . ..+. ... ....+.++......+..-..+|++|+|||||++
T Consensus 96 ~~~~~~~~~~~----------~---~~~~----------~~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 96 IVDGVSSVVGL----------P---SEEK----------FVL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEcccccccc----------c---cccc----------eec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 22221110000 0 0000 000 012344555555555555689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHhCCCeEEEEecCccHHH---------HHhh-ceEeEEe
Q 001228 1037 LD-----ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI---------FEAF-DELLLLK 1081 (1119)
Q Consensus 1037 LD-----~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~---------~~~~-d~~l~l~ 1081 (1119)
|| +..++.+.++++.+++.|+|||+++|+++ +. ...| |++++|.
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 98 77777899999999888999999999975 33 4667 9999995
No 159
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.63 E-value=6e-16 Score=196.08 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=104.0
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHc--------CCCCCCeeEEEEEECCccCChhhhcceEEEEccCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA--------GRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI 950 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~--------g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~ 950 (1119)
...+++||++.+++|++++|+|||||||||||++++ |..-+ ..+.. ++.+. .
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~~---------------~~~~d---~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESAE---------------VSIVD---C 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEEE---------------EECCS---E
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--ccccc---------------chHHH---H
Confidence 346899999999999999999999999999999993 42111 11110 11000 0
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCeE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL--VANPSII 1028 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL--~~~p~il 1028 (1119)
++..+++. +.. ..++|++++++..+|+++ +.+|+++
T Consensus 708 ----------------------------------i~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 ----------------------------------ILARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------------------------------HHHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 00011111 111 124788888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1029 FMDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||||||+|+|+.....+ +.+++.+.+ .|+|+|++||+. ++...+|++..+.+ |++.+.++
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~ 807 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTT 807 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEec
Confidence 99999999999888777 677777775 499999999995 46678999988865 67766554
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.63 E-value=1e-16 Score=176.19 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=94.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCee-EEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~-~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
.+|+++| +++|++++|+||||||||||+++|+|... +. +|.|.++|.++. |++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 3899999 99999999999999999999999999654 33 689998886642 333321100
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
+.+ +.+++.. ..| |++||++|..+|++|++|||| |+
T Consensus 75 -------v~q-----------------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------VNQ-----------------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------EEE-----------------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------eeH-----------------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 000 0112210 123 899999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
++...+ ++. +..|.+|++++|+.+ ....+|+++.|.
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 886544 333 356999999999975 456677765553
No 161
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.60 E-value=7.5e-16 Score=195.22 Aligned_cols=89 Identities=13% Similarity=0.199 Sum_probs=74.3
Q ss_pred CCCChHHHHHHHHHHHH--hcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 341 RGISGGQKKRVTTGEML--VGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al--~~~p~illlDEPtsgLDs~~~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
+++|+|+++++.+|+++ +.+|+++|||||++|||+.....+ +..++.+.+..+.++++++|. .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhccccee
Confidence 45899999999999988 999999999999999999998888 566677765457888888877 4677899999999
Q ss_pred cCCeEEEEcChhHH
Q 001228 418 SEGQIVYQGPRDNV 431 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (1119)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876654
No 162
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.60 E-value=1.2e-15 Score=185.05 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=116.1
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhh
Q 001228 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSG 270 (1119)
Q Consensus 191 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 270 (1119)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 679999999999999999999999999998765 232 12455666531 01222110
Q ss_pred hhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHH
Q 001228 271 RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350 (1119)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkR 350 (1119)
+ .+. + .+. +...|+....+..+.+ |||||+||
T Consensus 330 ~--------------------~g~----~------------------~~~-~~~~g~~~~~~~~p~~-----LS~g~~q~ 361 (525)
T 1tf7_A 330 S--------------------WGM----D------------------FEE-MERQNLLKIVCAYPES-----AGLEDHLQ 361 (525)
T ss_dssp T--------------------TSC----C------------------HHH-HHHTTSEEECCCCGGG-----SCHHHHHH
T ss_pred H--------------------cCC----C------------------HHH-HHhCCCEEEEEecccc-----CCHHHHHH
Confidence 0 000 0 011 1235565555555554 99999999
Q ss_pred HHHHHHHhcCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHHHhCCcEEEEEEecCc---------hhHHhhcCeEEE
Q 001228 351 VTTGEMLVGTANVLYMDEISTGLDSS-----TTFQICKFLKQMVHILDVTMIVALLQPA---------PETYDLFDDIIL 416 (1119)
Q Consensus 351 vsia~al~~~p~illlDEPtsgLDs~-----~~~~i~~~l~~~~~~~~~t~ii~~~q~~---------~~~~~~~D~i~l 416 (1119)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+++ .|.|++++.|... ..+..++|+|++
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~ 439 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 439 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEE
Confidence 99999999999999999 99999999 89999999988765 5889999988862 456789999999
Q ss_pred EcCCe
Q 001228 417 LSEGQ 421 (1119)
Q Consensus 417 L~~G~ 421 (1119)
|.+|+
T Consensus 440 L~~ge 444 (525)
T 1tf7_A 440 LQYVE 444 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
No 163
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.59 E-value=4.6e-17 Score=185.93 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=122.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC----------cccceEEEecc
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----------VPQRTCAYISQ 252 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----------~~~~~~~yv~Q 252 (1119)
.+.+|+++ +.|.+|++++|+|||||||||||++|+|..+++ .|.|.+.|++..+. ..++.+.+++|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999887 89999988652111 12356778887
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc
Q 001228 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1119)
Q Consensus 253 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 332 (1119)
.+. ...+.+.-... +..+ .++ ....|- +...
T Consensus 134 ~~~-----~~~~r~~~~~~----------------------------------~~~~--------ae~-~~~~~~-~vl~ 164 (347)
T 2obl_A 134 SDR-----PALERMKAAFT----------------------------------ATTI--------AEY-FRDQGK-NVLL 164 (347)
T ss_dssp TTS-----CHHHHHHHHHH----------------------------------HHHH--------HHH-HHTTTC-EEEE
T ss_pred CCC-----CHHHHHHHHHH----------------------------------HHHH--------HHH-HHhccc-cHHH
Confidence 542 22222211000 0000 000 000010 0000
Q ss_pred --ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEEecCc
Q 001228 333 --TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH-ILDV-----TMIVALLQPA 404 (1119)
Q Consensus 333 --t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~-~~~~-----t~ii~~~q~~ 404 (1119)
..+ ..+|+|| |||++| +++|++ |+|||+.....+.+.++++.+ ..|. |+++..|...
T Consensus 165 ~ld~~-----~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~ 229 (347)
T 2obl_A 165 MMDSV-----TRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN 229 (347)
T ss_dssp EEETH-----HHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC
T ss_pred HHhhH-----HHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC
Confidence 112 2389999 899999 678876 999999999999999998764 3354 5555554433
Q ss_pred hhHHhhcCeEEEEcCCeEEEEcChhHH
Q 001228 405 PETYDLFDDIILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 405 ~~~~~~~D~i~lL~~G~iv~~G~~~~~ 431 (1119)
..+||++++|.+|+++..|+..++
T Consensus 230 ---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 ---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp ---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 567999999999999999987765
No 164
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.58 E-value=1.3e-15 Score=192.41 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=97.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+..+++|||+++++|++++|+|||||||||||+++++...... . |...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-~------g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-I------GSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-H------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-c------Cccccch--hhhhhHH---HHHHHhCChH
Confidence 3569999999999999999999999999999999975311000 0 0000000 0011111 1111111111
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
++ ... +.+.+|+||+|++.|+++ +.+|++|||||||+|||
T Consensus 727 d~----------------------------------l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DN----------------------------------IYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HH----------------------------------HHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 11 111 134699999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCeEEEEecCccHHHHHhhceE
Q 001228 1039 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 1039 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+.....+. .+++.+.+ .|+|||++||+++ +.+.+|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99888886 77777765 5999999999964 44555543
No 165
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.56 E-value=1.4e-16 Score=171.42 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=94.6
Q ss_pred eccce-eeeeCCcEEEEEcCCCCCHHHHHHhHcCC--CCCC---eeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 883 LHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGG---YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 883 L~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~--~~~g---~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
|+.+- +.|++|++++|+||||||||||+++|+|. .+.+ ...+.+.+++.+... .+.+++++|...+.+. +
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~ 89 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-E 89 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-H
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-H
Confidence 44333 58999999999999999999999999983 3211 123467776643210 0112222232221111 1
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH-HHHHHHHHHHHHhc-------CCCeE
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST-EQRKRLTIAVELVA-------NPSII 1028 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~-Gqrqrl~iA~aL~~-------~p~il 1028 (1119)
+ .+.+.+. ...+. .+++.+..+.+++. +|++|
T Consensus 90 ~----------------------------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 129 (231)
T 4a74_A 90 V----------------------------LKHIYVA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLL 129 (231)
T ss_dssp H----------------------------HHTEEEE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred H----------------------------hhcEEEE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEE
Confidence 1 2211110 01233 33444666666666 89999
Q ss_pred EEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCCeEEEEecCccH---HHHHhhceEeEEecC
Q 001228 1029 FMDEPTSGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1029 lLDEPtsgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~d~~l~l~~g 1083 (1119)
+|||||+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|+++.|.++
T Consensus 130 ilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 130 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp EEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred EECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999999999984 2 2367777777754 49999999995431 255678999999864
No 166
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.56 E-value=5.9e-16 Score=166.64 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=94.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC----CcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHH
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL----RASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~----~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
+-+++|++++|+||||||||||+++|+|.+.+.. .-.|.|.+++.... ..+.++++.|...+++. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999544310 01345555553210 01123333333322222 3333322
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChH-
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG- 346 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG- 346 (1119)
+. +..+++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 21 112333
Q ss_pred HHHHHHHHHHHhc-------CCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEEecCc---
Q 001228 347 QKKRVTTGEMLVG-------TANVLYMDEISTGLDSS-------T-----TFQICKFLKQMVHILDVTMIVALLQPA--- 404 (1119)
Q Consensus 347 qkkRvsia~al~~-------~p~illlDEPtsgLDs~-------~-----~~~i~~~l~~~~~~~~~t~ii~~~q~~--- 404 (1119)
+++.+..+.+++. +|+++++|||+++||+. . ..++++.|+++++..+.|+|++.|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g 184 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGG 184 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcc
Confidence 2333444544444 89999999999999983 1 236788888887777888888776432
Q ss_pred hhHHhhcCeEEEEcCCe
Q 001228 405 PETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 405 ~~~~~~~D~i~lL~~G~ 421 (1119)
..+...+|.++.|++|+
T Consensus 185 ~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 185 HILAHSATLRVYLRKGK 201 (231)
T ss_dssp -----CCSEEEEEEECT
T ss_pred hhhHhhceEEEEEEecC
Confidence 23678899999998753
No 167
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.55 E-value=5.1e-16 Score=193.47 Aligned_cols=128 Identities=20% Similarity=0.136 Sum_probs=94.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
..+++||||+ |++++|+|||||||||||++|+|.... ...|.+. + . .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P--A--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S--S--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e--h--hccceeeHHH---hhccCCHHH
Confidence 5699999999 999999999999999999999985310 0112211 1 1 1234677765 334445444
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCeEEEeCC---C
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1034 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL--~~~p~illLDEP---t 1034 (1119)
++. .++|+|+++++.+|+++ +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 331 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1035 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1035 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
++||..+. ..+.+.+++ .|+|+|++||+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 99999875 467777766 4899999999853
No 168
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.54 E-value=5.2e-16 Score=199.12 Aligned_cols=159 Identities=15% Similarity=0.121 Sum_probs=110.1
Q ss_pred ceeeeceEEEEeC-------CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEE-EeccCCC
Q 001228 184 VRILKDVSGIVKP-------SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~ 255 (1119)
..|++|+++.+++ |++++|+|||||||||||++| |.+.+. ..+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------------------aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------------------AQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------------------HTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------------------hheeEEeccCcC
Confidence 4689999999987 999999999999999999999 987420 1234 8998753
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
.+||.|++.. + +|+.+..+.-.
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~~~~ 849 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIMSGE 849 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHhhch
Confidence 4566555410 0 11111111111
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..+|++++ ++++|++++.+|+++|||||++|+|+... ..++..|+.+++..+.++++++|.+ ..+..++|++
T Consensus 850 -----stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~ 922 (1022)
T 2o8b_B 850 -----STFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCS
T ss_pred -----hhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcc
Confidence 12566665 49999999999999999999999999885 4467888888765577888776654 4666789998
Q ss_pred EEEcCCeEE--EEcChh
Q 001228 415 ILLSEGQIV--YQGPRD 429 (1119)
Q Consensus 415 ~lL~~G~iv--~~G~~~ 429 (1119)
.++ +|++. +.|+.+
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 556544
No 169
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.54 E-value=2.6e-16 Score=176.92 Aligned_cols=159 Identities=13% Similarity=0.036 Sum_probs=84.5
Q ss_pred ccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC-CCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCC
Q 001228 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~-~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~ 954 (1119)
.++++.++++++|.| +|+|+||||||||+++|+|. .. +.+| +.++|.+.......+.++|++|.+.....
T Consensus 7 ~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ 77 (301)
T 2qnr_A 7 QVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLR 77 (301)
T ss_dssp -----------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEE
T ss_pred eECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccC
Confidence 445667999999998 99999999999999999996 33 3456 77777655332223557999998877778
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+|+.|+.-++.... . .+.....+..+.+. .+.. ..++|+|||||+.+||+++ +|++||||
T Consensus 78 ltv~Dt~g~~~~~~-~----~e~~~~l~~~l~~~------~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt 137 (301)
T 2qnr_A 78 LTVVDTPGYGDAIN-C----RDCFKTIISYIDEQ------FERY-----LHDESGLNRRHIIDNRVHC----CFYFISPF 137 (301)
T ss_dssp EEEEEEC----------------CTTHHHHHHHH------HHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSS
T ss_pred cchhhhhhhhhhcC-c----HHHHHHHHHHHHHH------HHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCc
Confidence 88888876643221 0 00000111111111 2233 2369999999999998885 99999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHhC-CCeEEEEecCcc
Q 001228 1035 SG-LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1067 (1119)
Q Consensus 1035 sg-LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1067 (1119)
++ ||+... +.++++.+. +.++|++.||+.
T Consensus 138 ~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 138 GHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 85 999873 555665543 788999999963
No 170
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.53 E-value=1.6e-14 Score=144.35 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=68.9
Q ss_pred CCCChHHHHHHHHH------HHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKKRVTTG------EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkkRvsia------~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..|||||||||+|| ++|+.+|++++|||||+|||+.++..+.+.++++.+. +.|+|++.|++ ++.+.||++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGGGCSEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHHhCCEE
Confidence 34999999999876 8999999999999999999999999999999998653 78888888875 577899999
Q ss_pred EEE--cCCeE
Q 001228 415 ILL--SEGQI 422 (1119)
Q Consensus 415 ~lL--~~G~i 422 (1119)
++| .+|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 45643
No 171
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.52 E-value=2.7e-17 Score=175.09 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=110.8
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCC--CCCCHHHHHHHHHHh
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWL 967 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~--~~~tv~e~l~~~~~l 967 (1119)
.++|+++||+|+||||||||+++|+|...+ .++|++|++.+. ..+++.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999985421 378999988765 5678988865421
Q ss_pred hcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH----HHHHHHHHHHhcCCCeEEEeCCCCC-------
Q 001228 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1036 (1119)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq----rqrl~iA~aL~~~p~illLDEPtsg------- 1036 (1119)
. .......+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~----~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 D----HPDAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp T----SGGGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred C----ChhhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1 11111123466777888776655443 34689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCeEEEEecCc
Q 001228 1037 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1066 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1066 (1119)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
No 172
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.52 E-value=9.2e-17 Score=170.98 Aligned_cols=145 Identities=17% Similarity=0.108 Sum_probs=107.8
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCC--CCCCHHHHHHHhhh
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMTVRETLDFSGR 271 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 271 (1119)
.++|++++|+||||||||||+++|+|.+++ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 478999999999999999999999998743 379999998776 56899998765321
Q ss_pred hcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH----
Q 001228 272 CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ---- 347 (1119)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq---- 347 (1119)
.. + . .........++.+++.+..+..+.+ +|+||
T Consensus 61 ~~--~-~----------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~-----~s~g~~~~~ 98 (211)
T 3asz_A 61 HP--D-A----------------------------------FDLALYLEHAQALLRGLPVEMPVYD-----FRAYTRSPR 98 (211)
T ss_dssp SG--G-G----------------------------------BCHHHHHHHHHHHHTTCCEEECCEE-----TTTTEECSS
T ss_pred Ch--h-h----------------------------------hhHHHHHHHHHHHHcCCCcCCCccc-----CcccCCCCC
Confidence 00 0 0 0011233456667776655555544 88886
Q ss_pred HHHHHHHHHHhcCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 001228 348 KKRVTTGEMLVGTANVLYMDEISTG-------LDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEPtsg-------LDs~~~~~i~~~l~~~~~~~~~t~ii~~~q 402 (1119)
+||+++|++++.+|.++++||||++ ||+.....+.+.+++.....|.|++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999998887654457777666665
No 173
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.52 E-value=2.2e-15 Score=165.56 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=96.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHH
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
++|+|+| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++. |++|+...
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~---------~~~~~~~~-------- 73 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE---------YVFKHKKS-------- 73 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC---------SCCCCSSS--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce---------eecCCcce--------
Confidence 4899999 8999999999999999999999999998762 2799999887642 33332100
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
+ .. + +.+|++. ..+
T Consensus 74 ---~---v~--------------------------------------q----------~~~gl~~-----------~~l- 87 (261)
T 2eyu_A 74 ---I---VN--------------------------------------Q----------REVGEDT-----------KSF- 87 (261)
T ss_dssp ---E---EE--------------------------------------E----------EEBTTTB-----------SCH-
T ss_pred ---e---ee--------------------------------------H----------HHhCCCH-----------HHH-
Confidence 0 00 0 0112211 012
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|++||++|..+|+++++|||| |+.+...+++ . +. .|.++++++|.+. ....+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 9988665443 2 22 4788888888754 6788999988854
No 174
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.51 E-value=3e-15 Score=187.62 Aligned_cols=152 Identities=13% Similarity=0.051 Sum_probs=99.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
..+++|++++ ++|++++|+|||||||||||++|+|....+. .|...... ...++++.| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 9999999999999999999999998421000 11111111 123555544 333444444
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
++..+ .+.+|+|+++ +..+...+.+|+++|||||++|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 43210 1246777765 4445556899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1040 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1040 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
.....+ +.+++.+.+ .|+++|++||+++ +...+|++..+.+ |++.
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~ 748 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLD 748 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEE
Confidence 766654 788888877 4999999999974 4556777654543 4443
No 175
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.51 E-value=1.3e-15 Score=170.78 Aligned_cols=149 Identities=14% Similarity=0.138 Sum_probs=106.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---------cceEEEeccCCCCCCCCCHHHHH
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---------QRTCAYISQHDLHHGEMTVRETL 266 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 266 (1119)
+|++++|+||||||||||++.|+|.+++. +|+|.++|.+...... ++.++|++|++..+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999886 8999999988653221 24589999999888889999999
Q ss_pred HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChH
Q 001228 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (1119)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG 346 (1119)
.++... +. + ..+++..|+.+..+.. ++..
T Consensus 178 ~~~~~~-~~---------------------d---------------------~~llDt~G~~~~~~~~--------~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY---------------------D---------------------LLFVDTAGRLHTKHNL--------MEEL 206 (304)
T ss_dssp HHHHHH-TC---------------------S---------------------EEEECCCCCCTTCHHH--------HHHH
T ss_pred HHHHhC-CC---------------------C---------------------EEEecCCCCCCchHHH--------HHHH
Confidence 764210 00 0 0012223333222222 3556
Q ss_pred HHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 001228 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 347 qkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 403 (1119)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.|+|+..|.+
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 69999999999999994444 45555555666777777665678888888754
No 176
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.51 E-value=1.3e-15 Score=170.81 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=101.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hh--cceEEEEccCCCCCCCCCHHHHHH
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TF--ARVSGYCEQNDIHSPYVTVYESLL 962 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~--~~~~gy~~q~~~~~~~~tv~e~l~ 962 (1119)
+|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... .+ ++.++|++|++...|..+++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 7999999999999999999999996543 368899999875321 11 245899999998888889999987
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001228 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042 (1119)
Q Consensus 963 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~ 1042 (1119)
+... + ..+. .+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~-~-~~d~----------~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKA-R-GYDL----------LFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHH-H-TCSE----------EEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHh-C-CCCE----------EEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 6421 1 0000 11222333222221 1455668999999999999994433 3444444
Q ss_pred HHHHHHHHHHHhC-CCeEEEEecCc
Q 001228 1043 AIVMRTVRNTVDT-GRTVVCTIHQP 1066 (1119)
Q Consensus 1043 ~~i~~~l~~~~~~-g~tvi~~~H~~ 1066 (1119)
..+++.++++.+. |.|+|++||+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4555666666543 89999999973
No 177
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.51 E-value=2e-15 Score=164.55 Aligned_cols=169 Identities=14% Similarity=0.108 Sum_probs=97.4
Q ss_pred eeece-EEEEeCCeEEEEEcCCCCCHHHHHHHHh--cCcCCCCCcceEEEECCccCCCCcc--cceEEEeccCCCCCCCC
Q 001228 186 ILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALA--GKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 186 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~La--G~~~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~l 260 (1119)
.|+++ .+-+++|++++|+||||||||||+++|+ |...+. +|.+.+++........ .+.++|++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 35554 3489999999999999999999999999 653333 5666666543211000 12234444433222222
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
++.++........ ... .....
T Consensus 95 ~~~~~~~~~~~~~--------------------------------------------~~~----------~~~~~----- 115 (251)
T 2ehv_A 95 AIVDGVSSVVGLP--------------------------------------------SEE----------KFVLE----- 115 (251)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEEccccccccc--------------------------------------------ccc----------ceecc-----
Confidence 3222221100000 000 00000
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCC-----HHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH--------
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLD-----SSTTFQICKFLKQMVHILDVTMIVALLQPAPET-------- 407 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLD-----s~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~-------- 407 (1119)
...+-++..+...+..-..+|+++++||||++|| +..+..+.+.++.+++ .|.|++++.|... +.
T Consensus 116 ~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~-~~~~~~~~~~ 193 (251)
T 2ehv_A 116 DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPD-PQHGKLSRYG 193 (251)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC-----CCSSSSS
T ss_pred CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCC-CCcccccccC
Confidence 0123344444444444467999999999999997 6666668888888765 4888888877654 44
Q ss_pred -Hhhc-CeEEEEc
Q 001228 408 -YDLF-DDIILLS 418 (1119)
Q Consensus 408 -~~~~-D~i~lL~ 418 (1119)
..+| |+|++|+
T Consensus 194 i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 194 IEEFIARGVIVLD 206 (251)
T ss_dssp CGGGGCSEEEEEE
T ss_pred hhhEeeeEEEEEe
Confidence 5788 9999995
No 178
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.50 E-value=1.3e-15 Score=174.57 Aligned_cols=167 Identities=19% Similarity=0.192 Sum_probs=101.3
Q ss_pred eeece-EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCC-CCcceE-EEECCccCCCCcccceEEEeccCCCCCCCC
Q 001228 186 ILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKD-LRASGK-ITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 186 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~LaG~~--~~~-~~~~G~-I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 260 (1119)
.|+++ +|.+++|++++|+||||||||||++.|++.. +|+ ....|+ |.+++.+. + ..+.++|++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH-
Confidence 46665 6899999999999999999999999999987 443 011367 77877543 1 12345566665444333
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
++.||+.+....
T Consensus 195 ~v~~ni~~~~~~-------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 EVLKHIYVARAF-------------------------------------------------------------------- 206 (349)
T ss_dssp HHGGGEEEEECC--------------------------------------------------------------------
T ss_pred HHhhCEEEEecC--------------------------------------------------------------------
Confidence 444444321100
Q ss_pred CCCChHHHHHHHHHHHHh-------cCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEEEe
Q 001228 341 RGISGGQKKRVTTGEMLV-------GTANVLYMDEISTGLDSST------------TFQICKFLKQMVHILDVTMIVALL 401 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~-------~~p~illlDEPtsgLDs~~------------~~~i~~~l~~~~~~~~~t~ii~~~ 401 (1119)
-|++|++++.++++++ .+|+++++||||++||+.. ..+++..|+++++..+.|+|++.|
T Consensus 207 --~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h 284 (349)
T 1pzn_A 207 --NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 284 (349)
T ss_dssp --SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred --ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 1344555555555555 7899999999999999852 356677788888777788887766
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEEcC
Q 001228 402 QPAPETYDLFDDIILLSEGQIVYQGP 427 (1119)
Q Consensus 402 q~~~~~~~~~D~i~lL~~G~iv~~G~ 427 (1119)
... +....|++......|+++.++.
T Consensus 285 ~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 285 VQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp CC----------------CCCCCTTC
T ss_pred ccc-ccccccCCccccCCcceEeecC
Confidence 543 4444555666667777665544
No 179
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.50 E-value=4.2e-14 Score=167.20 Aligned_cols=74 Identities=19% Similarity=0.362 Sum_probs=64.9
Q ss_pred CCChHHHHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 342 GISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~----~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
.||||||||++||++|+ .+|+++|||||+++||+..+..+.+.|+++.. .+.++|++.|+ .+....||+++.|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEEE
Confidence 38999999999999999 68999999999999999999999999998753 25677777776 4678899999999
Q ss_pred c
Q 001228 418 S 418 (1119)
Q Consensus 418 ~ 418 (1119)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 5
No 180
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.49 E-value=1.1e-15 Score=175.22 Aligned_cols=143 Identities=20% Similarity=0.149 Sum_probs=95.5
Q ss_pred eeccc-eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC--CC--CeeEEE-EEECCccCChhhhcceEEEEccCCCCCCCC
Q 001228 882 LLHSV-SGVFRPGVLTALMGVSGAGKTTLMDVLAGRK--TG--GYIEGD-IKISGYPKNQETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 882 vL~~v-s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~--~~--g~~~G~-i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~ 955 (1119)
.|+.+ .+.|++|++++|+||||||||||++.|++.. .+ |...|. |++++.+.. .++++++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 45665 5899999999999999999999999999853 21 111356 888876531 11234444544332211
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh-------cCCCeE
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV-------ANPSII 1028 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-------~~p~il 1028 (1119)
++.||+.+ ... .-|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~-------------------------------~~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYV-------------------------------ARA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEE-------------------------------EEC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEE-------------------------------Eec--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 22221111 000 02567888888888888 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCeEEEEecCcc
Q 001228 1029 FMDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPS 1067 (1119)
Q Consensus 1029 lLDEPtsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~ 1067 (1119)
++||||+++|+.. ...+++.|+++++ .|+|||+|+|...
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999999999862 3556666677654 4899999999854
No 181
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.49 E-value=2e-14 Score=181.69 Aligned_cols=145 Identities=14% Similarity=0.150 Sum_probs=97.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
..|++|||+.+++|++++|+|||||||||||+++++..-.. ..|. +.+.. .+.++..+.++..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~----------~vpa~-~~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS----------YVPAE-EATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC----------CBSSS-EEEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc----------cccch-hhhhhHHHHHHHhCChH
Confidence 56899999999999999999999999999999998642110 0110 00110 01111111122222222
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
+++ ...+ ..+
T Consensus 727 d~l-----------------------------------------------------------------~~~~-----stf 736 (918)
T 3thx_B 727 DNI-----------------------------------------------------------------YKGR-----STF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHH-----------------------------------------------------------------HHhH-----HHh
Confidence 221 1111 238
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~-~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
|+|++|++.|+++ +.+|+++|||||++|||+.....+. ..++.+++..+.|+++++|.+ ++.+++|+.
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 9999999999998 8999999999999999999999987 677777665678888888764 455666654
No 182
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.48 E-value=6e-14 Score=156.09 Aligned_cols=151 Identities=19% Similarity=0.129 Sum_probs=101.0
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhh
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLR 968 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~ 968 (1119)
.+++|++++|+||||||||||+..|++... .|.+ +.|.+... ...+.|+..++. ..+.......+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~------~~~~~~r~~~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDP------PTAIHHRLHALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSC------HHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCC------HHHHHHHHHHHH
Confidence 589999999999999999999999997432 2333 23433211 234667665442 111111111111
Q ss_pred cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC--CCCHHH---HH
Q 001228 969 LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 1043 (1119)
Q Consensus 969 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts--gLD~~~---~~ 1043 (1119)
. +... ....++++.+.+.+..+.. +..||+||+|++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1111 2245677888877765554 456999998765 68889999999999999 999744 47
Q ss_pred HHHHHHHHHH-hCCCeEEEEecCcc
Q 001228 1044 IVMRTVRNTV-DTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1044 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1067 (1119)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888888886 45999999999854
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.48 E-value=1.1e-15 Score=171.81 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=78.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC-cCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK-LGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~-~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
++.+++++++.| +|+||||||||||++.|+|. +.+. +| |.++|.++......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6664 78 8888876643222345799999988888899
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|.||..|+..... .+. .....+++. +..+..+ +
T Consensus 80 v~Dt~g~~~~~~~-------------~e~-----------------------~~~l~~~l~------~~~~~~~-----~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-------------RDC-----------------------FKTIISYID------EQFERYL-----H 112 (301)
T ss_dssp EEEEC-----------------------------------------------CTTHHHHHH------HHHHHHH-----H
T ss_pred hhhhhhhhhhcCc-------------HHH-----------------------HHHHHHHHH------HHHHHHH-----H
Confidence 9999877432100 000 000111111 1122333 3
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDVTMIVALL 401 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsg-LDs~~~~~i~~~l~~~~~~~~~t~ii~~~ 401 (1119)
++|||||||+.+|++++ ++++||||++ ||+... +.++++....+.++|++-|
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~ 165 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKA 165 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeC
Confidence 39999999999888875 9999999985 999863 5555554333444444443
No 184
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.48 E-value=1.1e-14 Score=181.69 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=98.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-CCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~-~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + ..+..++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4689999999 99999999999999999999999753 32 45431 1 11245777776 4555666
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
.|++. .|
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 66652 23
Q ss_pred CChHHHHHHHHHHHH--hcCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEecCchhHHhhc
Q 001228 343 ISGGQKKRVTTGEML--VGTANVLYMDEI---STGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (1119)
Q Consensus 343 LSGGqkkRvsia~al--~~~p~illlDEP---tsgLDs~~~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 411 (1119)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ .+.|+++++|.+ +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 899999999999999 999999999999 999998875 568888775 367888887764 444444
No 185
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.47 E-value=9.9e-15 Score=157.06 Aligned_cols=167 Identities=14% Similarity=0.137 Sum_probs=105.2
Q ss_pred eeecccee-eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcc---eEEEEccCCCCCCCCC
Q 001228 881 QLLHSVSG-VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR---VSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 881 ~vL~~vs~-~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~---~~gy~~q~~~~~~~~t 956 (1119)
..|+++.+ .+++|++++|+||||||||||++.|++... ...|.+.+.+.+.....+.+ ..++.+|..... .
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 84 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-K-- 84 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-T--
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-C--
Confidence 46888886 899999999999999999999999997432 11234444333222111110 011111100000 0
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPT 1034 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illLDEPt 1034 (1119)
+ .. ++.....++ .... ....|.++.++...+.+...+|+ +|++||||
T Consensus 85 ----~------~~------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 85 ----L------II------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp ----E------EE------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ----E------EE------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0 00 000000000 0000 12358999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCCeEEEEecCcc-------HHHHHhhceEeEEecC
Q 001228 1035 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1035 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~d~~l~l~~g 1083 (1119)
+++ |+.....+++.|+++++ .|+|||+++|+.. ..+...||++++|.+.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 888 99989999999999864 5999999999862 1266779999999753
No 186
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.46 E-value=1e-13 Score=149.07 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=64.6
Q ss_pred CChHHHHHHHHHHHHhcCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCc-------hhHHhhc
Q 001228 343 ISGGQKKRVTTGEMLVGTAN--VLYMDEISTGL--DSSTTFQICKFLKQMVHILDVTMIVALLQPA-------PETYDLF 411 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~--illlDEPtsgL--Ds~~~~~i~~~l~~~~~~~~~t~ii~~~q~~-------~~~~~~~ 411 (1119)
.|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++..+.|++++.|... +.+.++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 58999988888877778999 99999999888 9988999999999998777888888777652 4588899
Q ss_pred CeEEEEcCC
Q 001228 412 DDIILLSEG 420 (1119)
Q Consensus 412 D~i~lL~~G 420 (1119)
|+|++|...
T Consensus 184 d~vi~l~~~ 192 (235)
T 2w0m_A 184 DGIIRFRRM 192 (235)
T ss_dssp SEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 999999754
No 187
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.45 E-value=1.4e-14 Score=165.76 Aligned_cols=131 Identities=20% Similarity=0.262 Sum_probs=84.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
+|+++ ...+|++++|+||||||||||+++|+|...+. ..|.|...+.+... ......++++|....
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~---------- 179 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVH---------- 179 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBT----------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeec----------
Confidence 45544 67889999999999999999999999965311 12444332222211 011112222222110
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
...++..+ +||++|..+|++|++|||| |.++
T Consensus 180 ------------------------------------------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 180 ------------------------------------------RDTLGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp ------------------------------------------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ------------------------------------------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 01123322 8999999999999999999 6666
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1042 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
... +.+.+.+|.|||+|+|+.+. ...+||++.|.
T Consensus 211 ~~~----~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~ 244 (356)
T 3jvv_A 211 IRL----ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVF 244 (356)
T ss_dssp HHH----HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTS
T ss_pred HHH----HHHHHhcCCEEEEEEccChH--HHHHHHHhhhc
Confidence 444 34446679999999999863 37788887774
No 188
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.45 E-value=2.3e-16 Score=164.83 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=102.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 275 (1119)
|++++|+||||||||||+++|+|.++ + +| |.++|....+.. .++.++|++|+. ... ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999987 5 78 888887664322 356799999974 111 1111 01000
Q ss_pred CchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHH-H
Q 001228 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVT-T 353 (1119)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~rGLSGGqkkRvs-i 353 (1119)
+.+. ..+..+|. ....+|||||+++. +
T Consensus 67 --------------------------------------------------~~~~~~~~~~v~~-~~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 67 --------------------------------------------------EPPPGKRECRVGQ-YVVDLTSFEQLALPVL 95 (189)
T ss_dssp --------------------------------------------------CCCSSSCCEESSS-SEECHHHHHTTTTTTT
T ss_pred --------------------------------------------------cCCccccccccce-EEEcchHHHHHHHHHH
Confidence 0000 01123442 22348999999884 3
Q ss_pred HH---HHhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEE---EEecCchhHHhhcCeEEEEcCCeEEEE
Q 001228 354 GE---MLVGTANVLYMDE--ISTGLDSSTTFQICKFLKQMVHILDVTMIV---ALLQPAPETYDLFDDIILLSEGQIVYQ 425 (1119)
Q Consensus 354 a~---al~~~p~illlDE--PtsgLDs~~~~~i~~~l~~~~~~~~~t~ii---~~~q~~~~~~~~~D~i~lL~~G~iv~~ 425 (1119)
++ |+..+|++++||| |+..+|......+.+.++. ..++|+ ++.|..+ ..+.|+|..+.+|+++.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-----~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-----PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-----SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-----CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 8988998765555555542 345553 3323322 356788888888888764
No 189
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.44 E-value=2.6e-13 Score=150.97 Aligned_cols=151 Identities=14% Similarity=0.145 Sum_probs=102.2
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 272 (1119)
-+++|++++|+||||||||||++.|++.+. .|.+ +.|.+.. ....+.|+..++. .. .+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~~-~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------PT-AIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------HH-HHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------HH-HHH--HHH
Confidence 589999999999999999999999998653 4555 3344321 1346888876542 21 110 000
Q ss_pred cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHH
Q 001228 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352 (1119)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvs 352 (1119)
.. + +... .....+.+++.+++.+..+..+.. +|+||++++
T Consensus 88 ~~----------~-------g~~~-----------------~~~~~~~~~~~l~l~~~~~~~~~~-----ls~g~~~~i- 127 (279)
T 1nlf_A 88 HA----------L-------GAHL-----------------SAEERQAVADGLLIQPLIGSLPNI-----MAPEWFDGL- 127 (279)
T ss_dssp HH----------H-------HTTS-----------------CHHHHHHHHHHEEECCCTTSCCCT-----TSHHHHHHH-
T ss_pred HH----------H-------Hhhc-----------------ChhhhhhccCceEEeecCCCCccc-----CCHHHHHHH-
Confidence 00 0 0000 001234466777877766665554 999998876
Q ss_pred HHHHHhcCCcEeEEeCCCC--CCCHHH---HHHHHHHHHHHHHhCCcEEEEEEecC
Q 001228 353 TGEMLVGTANVLYMDEIST--GLDSST---TFQICKFLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 353 ia~al~~~p~illlDEPts--gLDs~~---~~~i~~~l~~~~~~~~~t~ii~~~q~ 403 (1119)
++++.+|+++++||||+ ++|... ..++++.|+++++..+.|+|++.|..
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 57888999999999999 999744 47888999998876788888876654
No 190
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.44 E-value=1.9e-15 Score=185.46 Aligned_cols=165 Identities=18% Similarity=0.237 Sum_probs=105.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCC-CCCcceEEEECCccCC------CCcccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGHELN------EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~~-~~~~~G~I~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 272 (1119)
++|+|||||||||||++|+|...| + +|.|+++|.++. ....++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999866 4 899999998752 122456899999999999999999999875332
Q ss_pred cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHH
Q 001228 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352 (1119)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvs 352 (1119)
.+.. + .++| ++++.
T Consensus 125 ~~~~-------------------------------------------------~--------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGE-------------------------------------------------G--------------MGIS---HELIT 138 (608)
T ss_dssp HHCS-------------------------------------------------S--------------SCCC---SCCEE
T ss_pred hcCC-------------------------------------------------c--------------cccc---hHHHH
Confidence 1100 0 0011 11111
Q ss_pred HHHHHhcCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch----h---HHhhc-----CeE
Q 001228 353 TGEMLVGTANVLYMDEI------STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP----E---TYDLF-----DDI 414 (1119)
Q Consensus 353 ia~al~~~p~illlDEP------tsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~----~---~~~~~-----D~i 414 (1119)
++.+....|+++|+||| |+|||+....++.+.++++.......+++.+.|... + +.+.. ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22222347999999999 999999999999999999754333334444443322 2 22222 457
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
+++.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8889988888887655443
No 191
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.43 E-value=2.7e-15 Score=156.66 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=100.0
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS 971 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~ 971 (1119)
|++++|+||||||||||+++|+|... .+| |.++|.+..+ ...++.+||++|+.. ... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hcccc--
Confidence 78999999999999999999999653 246 7777766533 234678999999751 111 111 00000
Q ss_pred CccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHH-HHHH---HHhcCCCeEEEeC--CCCCCCHHHHHH
Q 001228 972 DVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAI 1044 (1119)
Q Consensus 972 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl-~iA~---aL~~~p~illLDE--PtsgLD~~~~~~ 1044 (1119)
...+ ..+..++.. ...+|+|||+++ ++++ |++.+|+|||||| |+..+|....+.
T Consensus 67 ------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 001122222 235999999988 4454 5789999999999 899999986655
Q ss_pred HHHHHHHHHhCCCeEEE----EecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1045 VMRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1045 i~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
+.++++ ...++|+ ++|+.+. ...|++..+. +|+++...+
T Consensus 128 l~~~l~----~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~ 170 (189)
T 2i3b_A 128 VRQTLS----TPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTK 170 (189)
T ss_dssp HHHHHH----CSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCS
T ss_pred HHHHHh----CCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeCh
Confidence 555554 4445553 3498542 3456666654 578877554
No 192
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.42 E-value=4.1e-14 Score=177.47 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=104.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
..+++|+|+. ++|++++|+|||||||||||++|+|..... ..| ..+.. ....++++.| +++.+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999964211 012 11111 1134566555 45555666
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
|++... + ..+
T Consensus 661 d~l~~~---------------------------------------------------------~-------------stf 670 (800)
T 1wb9_A 661 DDLASG---------------------------------------------------------R-------------STF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh---------------------------------------------------------h-------------hhh
Confidence 665321 0 115
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|+|+++ ++.+...+.+|+++|||||++|+|+.....+ +..++.+.+..+.++++++|.+ +..+++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEE
Confidence 666654 4444556899999999999999999777665 6777777664578888888875 45578888777777877
Q ss_pred EEEc
Q 001228 423 VYQG 426 (1119)
Q Consensus 423 v~~G 426 (1119)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 193
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.41 E-value=8.2e-15 Score=155.29 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=91.0
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC---CCeeEEEEEECCcc-C-ChhhhcceEEEEccCCCCCCCCC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYP-K-NQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~---~g~~~G~i~i~g~~-~-~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++++ +.+.+|++++|+|+||||||||++.|+|... ..+..|.+.+.+.- . ....+....|+..+ ..+...
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~ 91 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYA---EVPEEM 91 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC---------CC
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCccc---ccCHHH
Confidence 6777 8899999999999999999999999999651 01223433221100 0 00000000111000 000000
Q ss_pred ---HHHHHHHHHHh-hc--------CCCccHHHHHHHHHHHHHHcCCCCcc-ccccCCCCCCCCCHHHHHH-HHHHHHHh
Q 001228 957 ---VYESLLYSAWL-RL--------SSDVDTKKRKMFVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKR-LTIAVELV 1022 (1119)
Q Consensus 957 ---v~e~l~~~~~l-~~--------~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqr-l~iA~aL~ 1022 (1119)
.+..+...... +. .........+..+.+.++..++..+. ... ...+|+||||| +..+++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK-----~D~~s~~~~~~~~~~~~~~~ 166 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK-----ADKLASGARKAQLNMVREAV 166 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC-----GGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec-----ccCCCchhHHHHHHHHHHHH
Confidence 01111111100 00 00000011122344556666654321 222 24589999999 89999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q 001228 1023 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058 (1119)
Q Consensus 1023 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~t 1058 (1119)
.+|+++++|||||++|..+...+++.|.++..+|.|
T Consensus 167 ~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 167 LAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp GGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999998765544
No 194
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.40 E-value=1.9e-14 Score=176.65 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=95.5
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC------hhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN------QETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~------~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
++++. +||+|+|||||||||++|+|...+ ..+|.|.++|.++. ...+++.+||++|++.+++..||+|++
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 45544 999999999999999999998643 14799999997631 234667899999999999999999999
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC------CC
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TS 1035 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP------ts 1035 (1119)
.+......... . ++| ++++.++.+...+|+++|+||| |+
T Consensus 119 ~~~~~~~~~~~-------------------~-------------~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~ 163 (608)
T 3szr_A 119 NKAQNAIAGEG-------------------M-------------GIS---HELITLEISSRDVPDLTLIDLPGITRVAVG 163 (608)
T ss_dssp HHHHHHHHCSS-------------------S-------------CCC---SCCEEEEEEESSSCCEEEEECCC------C
T ss_pred HHHHHHhcCCc-------------------c-------------ccc---hHHHHHHhcCCCCCceeEeeCCCccccccC
Confidence 77532211000 0 011 0112222233458999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHhC--CCeEEEEecCcc
Q 001228 1036 GLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPS 1067 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~ 1067 (1119)
|||+.....+.++++++..+ +.++++++|+.+
T Consensus 164 ~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 164 NQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp CSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 99999999999999997543 677888999875
No 195
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.40 E-value=2.2e-14 Score=166.31 Aligned_cols=179 Identities=17% Similarity=0.150 Sum_probs=112.2
Q ss_pred ccccceeeccceeeeeCCcE--EEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCC
Q 001228 876 GEDRLQLLHSVSGVFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~--~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~ 953 (1119)
++++.. |++||+++++|++ +||+|+||||||||+++|+|..- .|.. +... .....++.++|++|++.+++
T Consensus 24 ~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~ 95 (427)
T 2qag_B 24 GFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHT--QPGVQLQSNTYDLQESNVRL 95 (427)
T ss_dssp -CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEE
T ss_pred EECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCC--CccceEeeEEEEeecCcccc
Confidence 344455 9999999999999 99999999999999999999742 1211 1110 11123457999999988888
Q ss_pred CCCHHHHHHHHHHhhcC--CCccHHHHHHHHHHHHHHc-CCC----Cccccc----cC--CCCCCCCCHHHHHHHHHHHH
Q 001228 954 YVTVYESLLYSAWLRLS--SDVDTKKRKMFVDEVMELV-ELK----SLNDSM----VG--LPGVSGLSTEQRKRLTIAVE 1020 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~--~~~~~~~~~~~~~~~l~~~-~l~----~~~~~~----~~--~~~~~~LS~Gqrqrl~iA~a 1020 (1119)
.+||.|++.|+...... ...-.........++++.. ++. ...|.. +. .+...+|+..+ +.|+++
T Consensus 96 ~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~ 172 (427)
T 2qag_B 96 KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKK 172 (427)
T ss_dssp EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHH
T ss_pred ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHH
Confidence 88999988664321000 0000011223344555554 432 112221 11 11123577666 789999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEecC
Q 001228 1021 LVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1065 (1119)
Q Consensus 1021 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1065 (1119)
|..+++||++|||+..|.+.....+.+.|++ +...|.+|+.++.+
T Consensus 173 L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 173 LDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp TCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999999987 77779999988864
No 196
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.39 E-value=8.2e-13 Score=135.43 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeE
Q 001228 1004 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1079 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~----~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~ 1079 (1119)
+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.+ +.++|++||+. .....+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35799999999999999974 4699999999999999999999999999864 57899999985 46788999986
Q ss_pred Ee-cCcE
Q 001228 1080 LK-RGGR 1085 (1119)
Q Consensus 1080 l~-~gG~ 1085 (1119)
+. .+|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 53 3444
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=1.9e-14 Score=167.78 Aligned_cols=154 Identities=12% Similarity=0.070 Sum_probs=90.0
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++++.+++|+||+| +|+|+||||||||+++|+|........|.+.+++.+ ....+.++|++|.+...+.+|
T Consensus 21 y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 21 VYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEE
T ss_pred ECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCccccee
Confidence 34456999999998 999999999999999999965411112222222211 112356899999888888889
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC---eEEEeCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS---IIFMDEP 1033 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~---illLDEP 1033 (1119)
+.|++.+...... ... ...+.+.+ +. .++.+++||++|||+++.+|+ +|++|||
T Consensus 92 v~Dt~g~~~~~~~------~~~---~~~i~~~i------~~--------~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 92 IVDTPGFGDAVDN------SNC---WQPVIDYI------DS--------KFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp EEECC--------------------CHHHHHHH------HH--------HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred eeechhhhhhccc------hhh---HHHHHHHH------HH--------HHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 9998877543210 000 11111111 11 256677889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1034 T-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1034 t-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
| .|||+... ++++.+. .+.+||+++|..+
T Consensus 149 t~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 149 SGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp -CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred cccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9 69998874 3444444 3788888888643
No 198
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.36 E-value=6.6e-13 Score=160.55 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=69.5
Q ss_pred CCC-CHHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1005 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1005 ~~L-S~Gqrqrl~iA~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
..| |||||||++||++|+.+| ++|||||||+|||+.+...|.+.|+++++ |+|||+|||+++ +...||++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 357 999999999999999999 99999999999999999999999999987 899999999964 566799999996
Q ss_pred c
Q 001228 1082 R 1082 (1119)
Q Consensus 1082 ~ 1082 (1119)
+
T Consensus 472 ~ 472 (517)
T 4ad8_A 472 K 472 (517)
T ss_dssp C
T ss_pred c
Confidence 5
No 199
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.32 E-value=1.2e-11 Score=131.86 Aligned_cols=153 Identities=19% Similarity=0.137 Sum_probs=98.3
Q ss_pred eeccce-eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHH
Q 001228 882 LLHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 882 vL~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
.|+++. +.+++|++++|+|+||||||||++.|++ ..+ .+.+.++... . .+.. .
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~~-~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSPE-R 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCHH-H
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCHH-H
Confidence 577777 4899999999999999999999999998 221 2233433221 0 1111 1
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH--HHHHHHHHHHHhcC-CCeEEEeCCCCCC
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1037 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G--qrqrl~iA~aL~~~-p~illLDEPtsgL 1037 (1119)
+.- .... ..... +++++.+.+ ..++++ +++++..+++++.+ |+++++||||+.+
T Consensus 62 ~~~--~~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 0000 01111 122222211 123333 46788999999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCeEEEEecCccH------------HHHHhhceEeEEecC
Q 001228 1038 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1038 D~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~d~~l~l~~g 1083 (1119)
|+.. ...+++.|++++++ |+|||+++|.... .+...+|.+++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9732 24466667777644 8999999997541 356679999999864
No 200
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.32 E-value=1e-11 Score=127.25 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=70.4
Q ss_pred CCCChHHHHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 341 RGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~----~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +.++|++.|+ ..+.+.+|+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~--~~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLR--DVMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEec--HHHHHhCCEEEE
Confidence 349999999999999996 56799999999999999999999999998864 4566666665 367899999997
Q ss_pred Ec--CCeE-EEEcChhHHHH
Q 001228 417 LS--EGQI-VYQGPRDNVLE 433 (1119)
Q Consensus 417 L~--~G~i-v~~G~~~~~~~ 433 (1119)
+. +|.. +.....++..+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 64 6654 44455555443
No 201
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.31 E-value=4.2e-14 Score=151.22 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=84.1
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCH----HHHHHHH
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV----YESLLYS 964 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv----~e~l~~~ 964 (1119)
..++|++++|+||||||||||+++|+|..++....|.|.+.+.+... ..++.++|++|++..++.+++ .|++.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~- 89 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV- 89 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE-
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHH-
Confidence 46899999999999999999999999975421367889888876532 234568899986543222221 111000
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q 001228 965 AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044 (1119)
Q Consensus 965 ~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~ 1044 (1119)
..... +.| ++. +.+++..++++||| ||+.++..
T Consensus 90 ------------------------------~~~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 90 ------------------------------FGNYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp ------------------------------TTEEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred ------------------------------HhccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 00000 112 221 44566678999999 99999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCcc
Q 001228 1045 VMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1045 i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
+++.+. ++.||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998876 5899999999864
No 202
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.30 E-value=3.5e-12 Score=135.94 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=59.8
Q ss_pred CChHH--HHHHHHHHHHhcC-CcEeEEeCCCCCCCHH--------HHHHHHHHHHHHHHhCCcEEEEEEecCch------
Q 001228 343 ISGGQ--KKRVTTGEMLVGT-ANVLYMDEISTGLDSS--------TTFQICKFLKQMVHILDVTMIVALLQPAP------ 405 (1119)
Q Consensus 343 LSGGq--kkRvsia~al~~~-p~illlDEPtsgLDs~--------~~~~i~~~l~~~~~~~~~t~ii~~~q~~~------ 405 (1119)
.|+++ ++++..+++++.+ |+++++|||++++|+. ...++++.|+++++..+.|++++.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 45553 6688888899986 9999999999999973 23556777888887778888877665431
Q ss_pred ------hHHhhcCeEEEEcCC
Q 001228 406 ------ETYDLFDDIILLSEG 420 (1119)
Q Consensus 406 ------~~~~~~D~i~lL~~G 420 (1119)
.+.+.+|.+++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 467899999999754
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=4.2e-13 Score=156.48 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=86.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|+.|++.+++.+||
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 456999999998 99999999999999999998764311 2222222111 1112468999999888888999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
.||+.|....... + .. ....+++ + ..
T Consensus 93 ~Dt~g~~~~~~~~-------------~---------~~--------------~~i~~~i-~-----------------~~ 118 (418)
T 2qag_C 93 VDTPGFGDAVDNS-------------N---------CW--------------QPVIDYI-D-----------------SK 118 (418)
T ss_dssp EECC---------------------------------C--------------HHHHHHH-H-----------------HH
T ss_pred eechhhhhhccch-------------h---------hH--------------HHHHHHH-H-----------------HH
Confidence 9998774321100 0 00 0001111 0 12
Q ss_pred CChHHHHHHHHHHHHhcCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 001228 343 ISGGQKKRVTTGEMLVGTAN---VLYMDEIS-TGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~---illlDEPt-sgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q 402 (1119)
++.++++|++||++++.+|+ ++++|||| .|||+... ..++.+.. +.++|++++.
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 56677889999999999999 99999999 69998763 33444432 5667766654
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.29 E-value=3.6e-13 Score=154.10 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=45.0
Q ss_pred HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 352 sia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
+||++|..+|+++++|||+ |..+...+.+ .+. .|.++++++|... . .+.+|+++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~vl~t~H~~~-~-~~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHLVFGTLHTTS-A-AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCEEEEEESCSS-H-HHHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCEEEEEEccCh-H-HHHHHHHhhhcCc
Confidence 8999999999999999999 7666444443 333 4788888887765 3 3889999988654
No 205
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.29 E-value=4e-14 Score=147.85 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=88.3
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHHHHHHhhh
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGR 271 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 271 (1119)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3678999999999999999999999998 33 799999997653221 1234677777543 35788888876432
Q ss_pred hcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccc--cccccCccCCCCChHHHH
Q 001228 272 CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA--DTMVGDEMRRGISGGQKK 349 (1119)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~--dt~vg~~~~rGLSGGqkk 349 (1119)
... . .+. ...++.++..++++... +..+. .+|+|++|
T Consensus 78 ~~~------------~----~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~-----~ls~~~~~ 116 (191)
T 1zp6_A 78 RYA------------K----EGY--------------------FVILDGVVRPDWLPAFTALARPLH-----YIVLRTTA 116 (191)
T ss_dssp HHH------------H----TSC--------------------EEEECSCCCTTTTHHHHTTCSCEE-----EEEEECCH
T ss_pred HHh------------c----cCC--------------------eEEEeccCcHHHHHHHHhcCCCeE-----EEEecCCH
Confidence 110 0 000 00000001111121111 12222 39999999
Q ss_pred HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387 (1119)
Q Consensus 350 Rvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~ 387 (1119)
|+.++|++..+|+++ +|+.....+.+.++.
T Consensus 117 ~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 117 AEAIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 999999999999876 688766666665544
No 206
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.29 E-value=1.5e-13 Score=147.01 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=95.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH----HHHHHH
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV----RETLDF 268 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~f 268 (1119)
..++|++++|+||||||||||+++|+|.++|+ ...|.|.+++.+.... .++.++|++|++..|+.+|+ .|++.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 56899999999999999999999999998752 3589999988765432 23458899996554443333 222211
Q ss_pred hhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHH
Q 001228 269 SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348 (1119)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqk 348 (1119)
. |+ +.|-.+
T Consensus 90 ~------------------------------------------------------------------~~-----~yg~~~ 98 (219)
T 1s96_A 90 F------------------------------------------------------------------GN-----YYGTSR 98 (219)
T ss_dssp T------------------------------------------------------------------TE-----EEEEEH
T ss_pred H------------------------------------------------------------------hc-----cCCCCH
Confidence 1 10 111112
Q ss_pred HHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcCh
Q 001228 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPR 428 (1119)
Q Consensus 349 kRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~ 428 (1119)
++ .+.++..++++||| ||+.++.++.+.+. .+.|++++.|++ .++.+ ++ +..| .++.
T Consensus 99 ~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~ 155 (219)
T 1s96_A 99 EA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSK-IELDR---RL--RGRG----QDSE 155 (219)
T ss_dssp HH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCH
T ss_pred HH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCH
Confidence 21 23444557999999 99999999998876 256666665543 23332 43 6777 6788
Q ss_pred hHHHHHHH
Q 001228 429 DNVLEFFE 436 (1119)
Q Consensus 429 ~~~~~~f~ 436 (1119)
+++...+.
T Consensus 156 e~i~~rl~ 163 (219)
T 1s96_A 156 EVIAKRMA 163 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
No 207
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.29 E-value=9.7e-15 Score=152.57 Aligned_cols=154 Identities=13% Similarity=0.012 Sum_probs=92.5
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHHHHHHHHHHh
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l 967 (1119)
.+++|++++|+|+||||||||+++|+|... .|.|.++|.+.... ...+.++|++|... +..++.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 368999999999999999999999999743 57889988653211 11233566766543 356788888664422
Q ss_pred hcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 001228 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047 (1119)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~ 1047 (1119)
....... ..++.++..+++..+... +. .+..+|+|++|+++++|++.++|+++ +|+...+.+++
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1100000 000000011111111100 00 12359999999999999999999987 68888877777
Q ss_pred HHHHHHhCCCeEEEEec
Q 001228 1048 TVRNTVDTGRTVVCTIH 1064 (1119)
Q Consensus 1048 ~l~~~~~~g~tvi~~~H 1064 (1119)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665432333444443
No 208
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.28 E-value=4.1e-15 Score=172.04 Aligned_cols=163 Identities=17% Similarity=0.090 Sum_probs=95.3
Q ss_pred eeeceEEEEeC--CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcc----eEEEEC----CccCCCCccc--ceEEEeccC
Q 001228 186 ILKDVSGIVKP--SRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS----GKITYC----GHELNEFVPQ--RTCAYISQH 253 (1119)
Q Consensus 186 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~----G~I~~~----G~~~~~~~~~--~~~~yv~Q~ 253 (1119)
+.+.|+..|++ |+.++|+||||||||||+++|+|.+++. + |+|.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 45689999999 9999999999999999999999999885 6 766653 2221 00000 112222221
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc
Q 001228 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1119)
Q Consensus 254 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 333 (1119)
...+ ..|++||+.| +..+..++
T Consensus 233 ~~~~-~~t~~~nl~~---------------------------------------------------------~~~~~~~~ 254 (365)
T 1lw7_A 233 YIDY-AVRHSHKIAF---------------------------------------------------------IDTDFITT 254 (365)
T ss_dssp HHHH-HHHHCSSEEE---------------------------------------------------------ESSCHHHH
T ss_pred HHHH-HHhccCCEEE---------------------------------------------------------EeCCchHH
Confidence 1000 0011111100 00000111
Q ss_pred cccCccCCCCChHHHHHHHHHHHHh-cCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLV-GTANVLYMDE---IS------TGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~-~~p~illlDE---Pt------sgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 403 (1119)
.+- .+|+|+++|..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++.. +|
T Consensus 255 ~~~-----~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~ 328 (365)
T 1lw7_A 255 QAF-----CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP 328 (365)
T ss_dssp HHH-----HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS
T ss_pred HHH-----HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC
Confidence 111 15677788888887775 5899999999 65 588999999999999887654466666654 44
Q ss_pred chhHHhhcCeEEEE
Q 001228 404 APETYDLFDDIILL 417 (1119)
Q Consensus 404 ~~~~~~~~D~i~lL 417 (1119)
. +..+++|.+.++
T Consensus 329 ~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 329 S-YLDRYNQVKAVI 341 (365)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHH
Confidence 2 444555555444
No 209
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.28 E-value=8.7e-13 Score=152.39 Aligned_cols=126 Identities=19% Similarity=0.287 Sum_probs=89.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCee-EEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~-~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
+|++++ +++|++++|+||||||||||+++|+|... +. .|.|.+.+.+... ..+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee-----------
Confidence 677776 89999999999999999999999999654 22 5888666655431 2334566777631
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+++. +..| +.+|+++|..+|++|++|||+ |++
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 1135 468999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+.. .+++. +..|.+|++|+|..+ ....+|++
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl 253 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRI 253 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHH
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHH
Confidence 643 34443 356999999999864 44555654
No 210
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.26 E-value=1.1e-12 Score=151.07 Aligned_cols=137 Identities=15% Similarity=0.115 Sum_probs=98.6
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC-hhhhcceEEEEc-cCCCCCCCCCHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN-QETFARVSGYCE-QNDIHSPYVTVYE 959 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~-~~~~~~~~gy~~-q~~~~~~~~tv~e 959 (1119)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|...- ....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998763 4799999985421 122456688887 54321
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
+++.+..++-.|+.++..+|+.+++|||..
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222356667777788899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..+.+.++.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455667666543468899999965 56778999888764
No 211
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.26 E-value=3.1e-13 Score=136.78 Aligned_cols=78 Identities=22% Similarity=0.102 Sum_probs=66.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+.+++++|+.+++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999999 75 899999998774221111 2899998888 89999
Q ss_pred HHHHH
Q 001228 264 ETLDF 268 (1119)
Q Consensus 264 E~l~f 268 (1119)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 212
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.24 E-value=1.2e-14 Score=151.89 Aligned_cols=170 Identities=17% Similarity=0.225 Sum_probs=105.2
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSD 972 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~ 972 (1119)
|++++|+||||||||||+++|++. ..|.+.++|.+... ....|+++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999962 24678888754311 1234566665433344567777765432211000
Q ss_pred ccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC--CHHHHHHHHHHH------HHhcCCCeEEEeCCCCCCCHHHHHH
Q 001228 973 VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 1044 (1119)
Q Consensus 973 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L--S~Gqrqrl~iA~------aL~~~p~illLDEPtsgLD~~~~~~ 1044 (1119)
. ..+++.+......+. ...+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000000000000000 0124 788888888888 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCCeEEEEecC-ccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1045 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1045 i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
++.++.+...+.+||.++|. ++ ++.+.||+++ +.|+++..|++.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGD 180 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC----
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCC
Confidence 88888876567899999998 65 5778899998 568998888764
No 213
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.24 E-value=3e-12 Score=147.42 Aligned_cols=136 Identities=17% Similarity=0.124 Sum_probs=94.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEec-cCCCC--CCCCC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYIS-QHDLH--HGEMT 261 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 261 (1119)
+++++|+.+++|++++|+||||||||||+++|+|.++++ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 349999999999999999999999999999999999986 899999985311111 345688988 65432 23444
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
++++|
T Consensus 241 ~~~~i--------------------------------------------------------------------------- 245 (361)
T 2gza_A 241 AATLL--------------------------------------------------------------------------- 245 (361)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 44444
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
+.++..+|+.+++||+.. .++.+.++.+.. ...|++.++|..+ ....+||+..|..|.
T Consensus 246 ------------~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 246 ------------RSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ------------HHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ------------HHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 444456788999999985 234455555533 2346677777754 667889998887764
No 214
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.22 E-value=1.1e-14 Score=152.25 Aligned_cols=173 Identities=12% Similarity=0.048 Sum_probs=106.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 276 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 276 (1119)
|++++|+||||||||||+++|++. . +|.+.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 689999999999999999999972 2 68899998765332 134677776544455688888876432110
Q ss_pred chhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC--ChHHHHHHHHH
Q 001228 277 TRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTG 354 (1119)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL--SGGqkkRvsia 354 (1119)
..+. . .+++.+...... .. .+.+ |+|+++++.++
T Consensus 71 --------------~~~~---~---------------------~ild~~~~~~~~-~~-----~~~~~~s~g~~~~~~~i 106 (189)
T 2bdt_A 71 --------------LAQN---D---------------------VVLDYIAFPDEA-EA-----LAQTVQAKVDDVEIRFI 106 (189)
T ss_dssp --------------HTTC---E---------------------EEEESCCCHHHH-HH-----HHHHHHHHCSSEEEEEE
T ss_pred --------------hcCC---c---------------------EEEeeccCHHHH-HH-----HHHHHHhcccCCCeEEE
Confidence 0000 0 000000000000 00 0114 88888888887
Q ss_pred H------HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcCh
Q 001228 355 E------MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPR 428 (1119)
Q Consensus 355 ~------al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~ 428 (1119)
. +++.+++...+|+ +||+..... .+.++.+.. .+.++|.+.|....++.+.+|+|+ .+|+++.+|++
T Consensus 107 ~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~ 179 (189)
T 2bdt_A 107 ILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAG 179 (189)
T ss_dssp EEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC---
T ss_pred EEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecC
Confidence 7 8889988888884 899987777 777776643 356777665552457889999998 99999999988
Q ss_pred hHH
Q 001228 429 DNV 431 (1119)
Q Consensus 429 ~~~ 431 (1119)
+-+
T Consensus 180 ~~~ 182 (189)
T 2bdt_A 180 DPL 182 (189)
T ss_dssp ---
T ss_pred Cch
Confidence 654
No 215
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.21 E-value=5.6e-14 Score=162.50 Aligned_cols=167 Identities=9% Similarity=0.024 Sum_probs=95.9
Q ss_pred eeccceeeeeC--CcEEEEEcCCCCCHHHHHHhHcCCCCCCeeE----EEEEECCccCChhhhcceEEEEccCCCCCCCC
Q 001228 882 LLHSVSGVFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIKISGYPKNQETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 882 vL~~vs~~i~~--Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~----G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+.+.|++.|++ |++++|+|+||||||||+++|+|... +.. |.+.+++... ..+......
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~-------------~~~~~~~~~ 221 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLG-------------GDEQAMQYS 221 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSS-------------SCTTSSCTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcC-------------CCcccCChh
Confidence 35679999999 99999999999999999999999765 334 5544421000 000001111
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCC--CCccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEeC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL--KSLNDSMVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIFMDE 1032 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-~~p~illLDE 1032 (1119)
.. +++.+... ........+.+.+.+ .+..+.. ...+|+|++|+..+++++. .+|+++||||
T Consensus 222 ~~-~~I~~~~q----------~~~~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE 285 (365)
T 1lw7_A 222 DY-PQMALGHQ----------RYIDYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLK 285 (365)
T ss_dssp TH-HHHHHHHH----------HHHHHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEE
T ss_pred HH-HHHHHHHH----------HHHHHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECC
Confidence 11 22322110 000000000000000 0001111 1135667788888888775 5999999999
Q ss_pred ---CC------CCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1033 ---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1033 ---Pt------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
|+ .++|+..+..+.+.++++.+ .|.+||+++|. + .....++.+.+++
T Consensus 286 ~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 286 NNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999988754 48999999985 2 3445556665553
No 216
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.20 E-value=2e-13 Score=149.01 Aligned_cols=150 Identities=18% Similarity=0.141 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh---cCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALA---GKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~La---G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 272 (1119)
++++++|+||||||||||+++|+ |...++ .|+|.++|.+... .....+.++.|+..+++..|+.+++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999 987765 7888887754221 1123355667777788888999999764321
Q ss_pred -cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHH--HHcC------------CcccccccccC
Q 001228 273 -LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL--KILG------------LDICADTMVGD 337 (1119)
Q Consensus 273 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~lg------------L~~~~dt~vg~ 337 (1119)
.+.+-..+ + .+... ++ .+.+. ..++ ++...+..++.
T Consensus 102 ~~~~~~il~------------g-~~~~~-~~---------------~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 RRGQHWLLD------------G-FPRTL-GQ---------------AEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp CTTSCEEEE------------S-CCCSH-HH---------------HHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred cCCCeEEEE------------C-CCCCH-HH---------------HHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 00000000 0 00000 00 00000 0011 11223344544
Q ss_pred ccCCCCChHHHHHHHHHHHH-hcCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHH
Q 001228 338 EMRRGISGGQKKRVTTGEML-VGTANVLYMD----EISTGLDSSTTFQICKFLKQMVH 390 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al-~~~p~illlD----EPtsgLDs~~~~~i~~~l~~~~~ 390 (1119)
+|| || +++ +.+|++++|| |||+|||..+...+.+.++.+.+
T Consensus 153 -----lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 153 -----PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp -----TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred -----CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 899 66 677 9999999999 99999999999999999888755
No 217
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.19 E-value=4.2e-13 Score=142.07 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=53.2
Q ss_pred HHHHcCCccc-ccccccCccCCCCChHHHHH-HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001228 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKR-VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (1119)
Q Consensus 321 ~l~~lgL~~~-~dt~vg~~~~rGLSGGqkkR-vsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~ 390 (1119)
.++..+++.. ..+++.. +|+||||| +..+++++.+|..+++|||||++|.....++.+.|.++..
T Consensus 132 ~~~~~~~~~~~v~nK~D~-----~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 132 WAVDSNIAVLVLLTKADK-----LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHTTCCEEEEEECGGG-----SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHcCCCeEEEEecccC-----CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 4455666643 2455544 89999999 8999999999999999999999999999999999988754
No 218
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.19 E-value=1.3e-12 Score=153.23 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=68.3
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------c--ccceEEEeccCCCCC
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------V--PQRTCAYISQHDLHH 257 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~--~~~~~~yv~Q~d~~~ 257 (1119)
-+++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999875 89999987654321 0 134689999998888
Q ss_pred CCCCHHHHHHHhh
Q 001228 258 GEMTVRETLDFSG 270 (1119)
Q Consensus 258 ~~lTV~E~l~f~~ 270 (1119)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998753
No 219
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.19 E-value=9.7e-15 Score=165.49 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=96.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCCCC------CeeEEEEEECCccCChh------------------hhcceEEEE---c
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRKTG------GYIEGDIKISGYPKNQE------------------TFARVSGYC---E 946 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~~~------g~~~G~i~i~g~~~~~~------------------~~~~~~gy~---~ 946 (1119)
++++|+|+||||||||++.|.|...+ .+..|+|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986421 12468888888664321 233445666 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hh-hcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 001228 947 QNDIHSPYVTVYESLLYSA--WL-RLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV 1022 (1119)
Q Consensus 947 q~~~~~~~~tv~e~l~~~~--~l-~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~ 1022 (1119)
|++...+..++.|+..++. .+ +.. .+ ........++.++..+++.+..+... ++|+||+||+..+++++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~-~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSH-EVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHS-HHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcC-ccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEE
Confidence 6555555666666554320 00 000 00 00000001122233334444333332 58999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 001228 1023 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066 (1119)
Q Consensus 1023 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1066 (1119)
.+|+++ ||| +.+.+.|+++. .+.||++++|++
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~ 189 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGD 189 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccC
Confidence 999987 999 67888888874 589999999975
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.18 E-value=3.5e-12 Score=147.95 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=99.3
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
.+ |++||+.+++|++ ++|+||||||||||+++|+|.. +.|..... .......+.++|++|++.+++.+|
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----l~g~~~~~---~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----FEGEPATH---TQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----C----------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----ccCCcCCC---CCccceEeeEEEEeecCccccccc
Confidence 44 9999999999999 9999999999999999999984 12321110 001112357999999998888999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc-CCc----cccccc--
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLD----ICADTM-- 334 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~----~~~dt~-- 334 (1119)
|.||+.|+.... ...... .+..+++ ...+..|... ++. ...|+.
T Consensus 99 v~D~~~~g~~~~----~~~~~~---------------~i~~~i~----------~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQIN----KEDSYK---------------PIVEFID----------AQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CC----HHHHSH---------------HHHHHHH----------HHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhccc----cchhhh---------------HHHHHHH----------HHHHHHHHHHHhhhhhhccccccccc
Confidence 999997753211 000000 0000110 1122233332 433 112322
Q ss_pred --cc--CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HH
Q 001228 335 --VG--DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ-MV 389 (1119)
Q Consensus 335 --vg--~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~-~~ 389 (1119)
+. .+...+++-.+ +.++++|..+++|+++|+|+..|.+.....+.+.+++ +.
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV 206 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH
Confidence 11 11124577666 7899999999999999999999999888888888876 43
No 221
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.18 E-value=4e-14 Score=154.50 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=95.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHc---CCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhh
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLR 968 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~---g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~ 968 (1119)
++++++|+|+||||||||+++|+ |... +..|++.++|.+.. ....+.+++++|+....+..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 9765 45677777664422 122233455677777778889999987643100
Q ss_pred cC-----CCccHHHHHHHHHHHHHHc--C------------CCCccccccCCCCCCCCCHHHHHHHHHHHHH-hcCCCeE
Q 001228 969 LS-----SDVDTKKRKMFVDEVMELV--E------------LKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL-VANPSII 1028 (1119)
Q Consensus 969 ~~-----~~~~~~~~~~~~~~~l~~~--~------------l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL-~~~p~il 1028 (1119)
.. ....... ..++.+.+.. + +..+.++. +..||| |+ +++ +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 00 0001111 1122222111 1 11112222 235888 55 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhC
Q 001228 1029 FMD----EPTSGLDARAAAIVMRTVRNTVDT 1055 (1119)
Q Consensus 1029 lLD----EPtsgLD~~~~~~i~~~l~~~~~~ 1055 (1119)
+|| |||++||..+...+.+.++++.++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999 999999999999999999988654
No 222
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.18 E-value=7.7e-14 Score=143.08 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------cc-ceEE----EeccCCCCCCCCCHHHHH
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQ-RTCA----YISQHDLHHGEMTVRETL 266 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 266 (1119)
++++|+||||||||||++.|+|.+++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999874233699999998854332 12 2355 788876554 110
Q ss_pred HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChH
Q 001228 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (1119)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG 346 (1119)
+ .. +. .+ ..+.+++. .|+ ..||.+++ |+|||
T Consensus 77 -------~--~~-----~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--SE-----EE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--CH-----HH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--Ch-----hh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 00 00 00 01223333 133 57899997 59999
Q ss_pred HHHHHHHHHHHhcCCcEe
Q 001228 347 QKKRVTTGEMLVGTANVL 364 (1119)
Q Consensus 347 qkkRvsia~al~~~p~il 364 (1119)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999863
No 223
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.18 E-value=2.6e-12 Score=146.25 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=84.9
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEEC-CccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS-GYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~-g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
++++++. .+|++++|+|+||||||||+++|+|.... +..|+|.++ |.... .+..+.+++++|+..+++..+++|+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh
Confidence 5566654 47999999999999999999999997641 347888876 65542 23456789999998888888888841
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL 1021 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL 1021 (1119)
+ .....++....+.++++.+++.++.+... .+|| ||+||++||+++
T Consensus 283 -----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 -----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 12334445566788899999988887764 4699 999999999864
No 224
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.17 E-value=5.1e-11 Score=137.93 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHH------HHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhce
Q 001228 1004 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl------~iA~aL~~~-p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1076 (1119)
+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999987 567899999 99999999999999999999999999874 3579999999974 5678999
Q ss_pred EeEEecCc
Q 001228 1077 LLLLKRGG 1084 (1119)
Q Consensus 1077 ~l~l~~gG 1084 (1119)
+++|.+.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998555
No 225
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.17 E-value=6.1e-13 Score=134.60 Aligned_cols=81 Identities=21% Similarity=0.092 Sum_probs=65.9
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+++..++++|||++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++......+ .|++|+..++ .+|
T Consensus 17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~lt 90 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCS
T ss_pred HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCC
Confidence 34456899999999999999999999999999999999976 3 4799999998764211111 2789988777 899
Q ss_pred HHHHHHH
Q 001228 957 VYESLLY 963 (1119)
Q Consensus 957 v~e~l~~ 963 (1119)
+.|++.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999865
No 226
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.17 E-value=1.2e-11 Score=133.82 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=86.1
Q ss_pred eccce-eeeeCCcEEEEEcCCCCCHHHHHHhHcC--CCCC---CeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 883 LHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG---GYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 883 L~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~g--~~~~---g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
|+.+- +.+++|++++|+||||||||||+..|++ .... +...|.+++++.+.. .
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~ 71 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------R 71 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------C
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------C
Confidence 44433 5799999999999999999999999998 3321 112466777665420 0
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH-HHHHHHHHh--cCCCeEEEeCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK-RLTIAVELV--ANPSIIFMDEP 1033 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq-rl~iA~aL~--~~p~illLDEP 1033 (1119)
..+.......+ .... +++++.+.+ ....+..+.. .+.-+.+++ .+|++|++|||
T Consensus 72 ~~~~~~~~~~~----g~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 72 PERLLAVAERY----GLSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHT----TCCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHc----CCCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 00000000000 0000 112221110 0124544433 233333444 58999999999
Q ss_pred CCCCCHH-------H-----HHHHHHHHHHHHh-CCCeEEEEecCccHHHHH-------------------hhceEeEEe
Q 001228 1034 TSGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFE-------------------AFDELLLLK 1081 (1119)
Q Consensus 1034 tsgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~-------------------~~d~~l~l~ 1081 (1119)
++.+|+. + ...+++.|+++++ .|+|||+++|... +... .+|.+++|.
T Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~ 207 (243)
T 1n0w_A 129 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 207 (243)
T ss_dssp SGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEE
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEE
Confidence 9999985 3 3445555666654 4999999999643 2211 689999998
Q ss_pred cC
Q 001228 1082 RG 1083 (1119)
Q Consensus 1082 ~g 1083 (1119)
++
T Consensus 208 ~~ 209 (243)
T 1n0w_A 208 KG 209 (243)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 227
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.15 E-value=4.2e-12 Score=144.51 Aligned_cols=121 Identities=17% Similarity=0.093 Sum_probs=81.5
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-CCCCcceEEEEC-CccCCCCcccceEEEeccCCCCCCCCCHHH
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYC-GHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~-~~~~~~G~I~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |..... ...+.++|++|+..+++++||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 5555554 4799999999999999999999999998 75 8999987 755432 23457999999998998889998
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
+. +.+. ...+ ......++++.+|+.+..|....+ +|
T Consensus 281 ~~-----l~~l----------~~~e------------------------~~~~~~e~l~~~gl~~f~~~~~~~-----lS 316 (358)
T 2rcn_A 281 FG-----LWHL----------EPEQ------------------------ITQGFVEFHDYLGHCKYRDCKHDA-----DP 316 (358)
T ss_dssp CC-----CCCC----------CHHH------------------------HHHTSGGGGGGTTCSSSTTCCSSS-----CT
T ss_pred hh-----hcCC----------CHHH------------------------HHHHHHHHHHHcCCchhcCCCccc-----CC
Confidence 41 1110 0000 011234567788988878877766 99
Q ss_pred hHHHHHHHHHHHH
Q 001228 345 GGQKKRVTTGEML 357 (1119)
Q Consensus 345 GGqkkRvsia~al 357 (1119)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999764
No 228
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.15 E-value=4.5e-12 Score=146.45 Aligned_cols=131 Identities=17% Similarity=0.260 Sum_probs=92.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. ...++.++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 677776 8999999999999999999999999998762 1699987776553 23344567777731
Q ss_pred HHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCCh
Q 001228 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (1119)
Q Consensus 266 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSG 345 (1119)
+|++ . ..+
T Consensus 191 -----------------------------------------------------------~g~~------~-----~~~-- 198 (372)
T 2ewv_A 191 -----------------------------------------------------------VGED------T-----KSF-- 198 (372)
T ss_dssp -----------------------------------------------------------BTTT------B-----SCS--
T ss_pred -----------------------------------------------------------cCCC------H-----HHH--
Confidence 0110 0 013
Q ss_pred HHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 346 GqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
+.+|+++|..+|+++++|||+ |..+... .++.. ..|.+++.++|.. ++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~~--~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRAA--ETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHHH--TTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHHH--hcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 34332 2467776666653 4777888877664
No 229
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.13 E-value=2.9e-11 Score=130.89 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=42.0
Q ss_pred cCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEEecCchh-------------------H
Q 001228 359 GTANVLYMDEISTGLDSS-------T-----TFQICKFLKQMVHILDVTMIVALLQPAPE-------------------T 407 (1119)
Q Consensus 359 ~~p~illlDEPtsgLDs~-------~-----~~~i~~~l~~~~~~~~~t~ii~~~q~~~~-------------------~ 407 (1119)
.+|+++++|||++.+|+. . ...++..|+++++..+.|++++.|.. .+ +
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~-~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee-ecCCCccccCCCcccCCccChh
Confidence 589999999999999975 3 34567778887777788877765532 22 2
Q ss_pred HhhcCeEEEEcCC
Q 001228 408 YDLFDDIILLSEG 420 (1119)
Q Consensus 408 ~~~~D~i~lL~~G 420 (1119)
..++|.+++|+.|
T Consensus 197 ~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 197 AHASTTRLYLRKG 209 (243)
T ss_dssp CCTTCEEEEEEEC
T ss_pred hhcCcEEEEEEEc
Confidence 2379999999865
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.12 E-value=8.8e-12 Score=146.24 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=101.3
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------h--hcceEEEEccCCCCCC
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------T--FARVSGYCEQNDIHSP 953 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~--~~~~~gy~~q~~~~~~ 953 (1119)
-+++||++++|++++|+|+||||||||+++|+|... +..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 357899999999999999999999999999999654 2358899987665321 1 2456899999988788
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh-cCC-CeEEEe
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV-ANP-SIIFMD 1031 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-~~p-~illLD 1031 (1119)
..++++++.+... + ..+. -+++..|+.+... .+-..-+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~-~-~~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKA-R-NIDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHH-T-TCSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHh-c-CCCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8899999987632 1 1110 0111122211100 12224457788888663 456 456555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEec
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 1064 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1064 (1119)
.||+|.|... .++.+.+ -|.|.|++||
T Consensus 420 DattGq~al~------~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAVS------QAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHHH------HHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHHH------HHHHHHhhcCCCEEEEEc
Confidence 6998876542 2333332 4889999999
No 231
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.12 E-value=1.4e-13 Score=157.06 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=104.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hhcceEEEEccCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TFARVSGYCEQNDIHS 952 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~~~~~gy~~q~~~~~ 952 (1119)
..+|+++|+++++|++++|+|+||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++..+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 468999999999999999999999999999999998643 2357788887664321 2345689999988766
Q ss_pred CCC------------CHHHHHHHHH-------------------HhhcCCC-------ccHHHHHHHH-HHHHHHcCCCC
Q 001228 953 PYV------------TVYESLLYSA-------------------WLRLSSD-------VDTKKRKMFV-DEVMELVELKS 993 (1119)
Q Consensus 953 ~~~------------tv~e~l~~~~-------------------~l~~~~~-------~~~~~~~~~~-~~~l~~~~l~~ 993 (1119)
+.. ++.|.+.... .+....+ .......+.+ ..+++...+--
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 432 2333331100 0000000 0000000000 01112211110
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001228 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054 (1119)
Q Consensus 994 ~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1054 (1119)
.++.. ......+|+|++|++..+++++. +|++++ ||++|......+++.|.++..
T Consensus 200 -lNK~D-l~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 -VNKAD-DGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -EECCS-TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred -EEchh-ccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 11110 00113579999999999999987 688887 999999999999999988754
No 232
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.11 E-value=9e-11 Score=138.63 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1005 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++...|.++|+|||++ .....||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 369999999999999999 58999999999999999999999999999865588999999984 567789999998
Q ss_pred ec
Q 001228 1081 KR 1082 (1119)
Q Consensus 1081 ~~ 1082 (1119)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 233
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.10 E-value=4.4e-11 Score=119.89 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=37.1
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe-EEEEecCc
Q 001228 1022 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQP 1066 (1119)
Q Consensus 1022 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~ 1066 (1119)
+.+|++|++|||++ +|...++.+.++++++.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 46799999999998 6655588999999998877888 88899864
No 234
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.10 E-value=1.6e-13 Score=155.42 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc--------CCCCCcceEEEECCccCCCCc------------------ccceEEEe-
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKL--------GKDLRASGKITYCGHELNEFV------------------PQRTCAYI- 250 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~--------~~~~~~~G~I~~~G~~~~~~~------------------~~~~~~yv- 250 (1119)
++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++.... ..+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 444 899999998765431 11335666
Q ss_pred --ccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc
Q 001228 251 --SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (1119)
Q Consensus 251 --~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 328 (1119)
+|+..+++..+|.||..++... .....+.. ++.. ......+.++..+++.
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~---------~~~~------------~~~~~l~~~l~~vd~~ 133 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFS---------HEVL------------CQRYLLDGVIALVDAV 133 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHH---------SHHH------------HHHEEEEEEEEEEETT
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhc---------Cccc------------cCeEEECCEEEEEEHH
Confidence 5666555667777776543110 00000000 0000 0000111223344444
Q ss_pred ccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 001228 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (1119)
Q Consensus 329 ~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 404 (1119)
+..+... .+|||||||+..+++++.+|+++ ||| ..+.+.++++. .+.+++++.|.+.
T Consensus 134 ~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~ 190 (318)
T 1nij_A 134 HADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI 190 (318)
T ss_dssp THHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC
T ss_pred HHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC
Confidence 4444433 28999999998888888888877 888 67777777764 3677777777643
No 235
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.10 E-value=6.6e-12 Score=139.88 Aligned_cols=132 Identities=16% Similarity=0.213 Sum_probs=83.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 274 (1119)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++. ++++++.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 36789999999999999999999999865 23 0 02346677999999875 88999887521000
Q ss_pred CCchhHHhHHhhHHHHhcCCCCC-hhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc------cccCccCCCCChHH
Q 001228 275 VGTRYELLAELSRREKQAGIKPD-PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT------MVGDEMRRGISGGQ 347 (1119)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------~vg~~~~rGLSGGq 347 (1119)
.-. ..+. |+ -+.+. ....++.+.- ..+| .+. .....+||||
T Consensus 92 l~~-------------~~g~-p~a~d~~~---------------l~~~l~~l~~--g~~t~~~~~v~~p-~y~~~~sgGq 139 (290)
T 1odf_A 92 LLQ-------------GRGL-PGTHDMKL---------------LQEVLNTIFN--NNEHPDQDTVVLP-KYDKSQFKGE 139 (290)
T ss_dssp GGS-------------SSCS-TTSBCHHH---------------HHHHHHHHTC--------CCEEEEC-CEETTHHHHT
T ss_pred hhh-------------hccC-cchhHHHH---------------HHHHHHHhhc--cCccccCcceeec-cCccccCCcc
Confidence 000 0000 11 11111 1223444422 2122 121 1235699999
Q ss_pred HHHHHHH--HHHhcCCcEeEEeCCCCCCCHHH
Q 001228 348 KKRVTTG--EMLVGTANVLYMDEISTGLDSST 377 (1119)
Q Consensus 348 kkRvsia--~al~~~p~illlDEPtsgLDs~~ 377 (1119)
+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 140 ~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 140 GDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999987 555 999999999999999853
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.09 E-value=1.8e-11 Score=138.55 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=61.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---------cceEEEeccCCCCCCCCCHHH
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---------QRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... +..+.|++|.....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 4789999999999999999999999999886 8999999988644321 123669999999999999999
Q ss_pred HHHHh
Q 001228 265 TLDFS 269 (1119)
Q Consensus 265 ~l~f~ 269 (1119)
++.++
T Consensus 203 ~l~~~ 207 (328)
T 3e70_C 203 AIQHA 207 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99775
No 237
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.09 E-value=3e-12 Score=149.13 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=89.8
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHH
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLL 962 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~ 962 (1119)
-++|+++++.|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++.+++.. .+++.|..-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~~--~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEEE--RFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSSC--EEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCcc--eEEEEeccc
Confidence 479999999999999999999999999999998642 23333321 122335555554300 001111000
Q ss_pred HHHHhhcCCCccHHHH--HHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 963 YSAWLRLSSDVDTKKR--KMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 963 ~~~~l~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+............... .+.++.++..+++. +.. ...||+|++|++.+|++|+.+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000000111000 00111122222222 111 346999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEec
Q 001228 1041 AAAIVMRTVRNTVDTGRTVVCTIH 1064 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~g~tvi~~~H 1064 (1119)
....+.++.+.+.+.|.+++.+|.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 764333333334445777776654
No 238
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.08 E-value=1.5e-12 Score=148.48 Aligned_cols=182 Identities=14% Similarity=0.066 Sum_probs=109.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~ 256 (1119)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.+.... ..++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35899999999999999999999999999999999998875 89999998776432 124568999999877
Q ss_pred CCCCC------------HHHHHHHhhh-------hcCCCchhHHhHHhhHHHHhcCC---CCChh-HHHHHHHHHhhccc
Q 001228 257 HGEMT------------VRETLDFSGR-------CLGVGTRYELLAELSRREKQAGI---KPDPE-IDAFMKAVAVAGQE 313 (1119)
Q Consensus 257 ~~~lT------------V~E~l~f~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~ 313 (1119)
++..+ ++|.+..... ...+|-+.. +. ..+....+ .-++. -+.. + .
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~---~~-~v~~~~d~vl~v~d~~~~~~~-~-------~ 186 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS---ET-AVADLTDFFLVLMLPGAGDEL-Q-------G 186 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC---HH-HHHTTSSEEEEEECSCC--------------
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc---hh-hHHhhCCEEEEEEcCCCcccH-H-------H
Confidence 75322 3333311000 000111000 00 00000000 00000 0000 0 0
Q ss_pred hhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 314 TSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQ 387 (1119)
Q Consensus 314 ~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~------~p~illlDEPtsgLDs~~~~~i~~~l~~ 387 (1119)
.......+...+.+ +..|..- .+.+|+|++|++..+.+++. .|++++ +|++|......+++.|.+
T Consensus 187 i~~~i~~~~~ivvl-NK~Dl~~----~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 187 IKKGIFELADMIAV-NKADDGD----GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp CCTTHHHHCSEEEE-ECCSTTC----CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhccccEEEE-EchhccC----chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 00011122223333 2223110 12379999999999999887 588887 999999999999999887
Q ss_pred HH
Q 001228 388 MV 389 (1119)
Q Consensus 388 ~~ 389 (1119)
..
T Consensus 258 ~~ 259 (337)
T 2qm8_A 258 HR 259 (337)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 239
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.07 E-value=6.5e-12 Score=146.31 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=99.1
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHH
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 266 (1119)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.+.. ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 479999999999999999999999999999999742 2334333322 224666666541 112222221
Q ss_pred HH---hhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 267 DF---SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 267 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
-+ +....+.+. .+.+. ...++.++..+++. +..+.+ +
T Consensus 214 Gli~~a~~~~~L~~------------------------~fl~~--------~era~~lL~vvDls---~~~~~~-----l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------------------------EFLRH--------IARTRVLLYVLDAA---DEPLKT-----L 253 (416)
T ss_dssp CCCCCGGGSCCSCH------------------------HHHHH--------HTSSSEEEEEEETT---SCHHHH-----H
T ss_pred ccccchhhhhhhhH------------------------HHHHH--------HHHHHhhhEEeCCc---cCCHHH-----H
Confidence 11 000000000 00000 00112234444443 333433 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
|+||+||+.+|++|...|.++++ +++|.... ..++.+++..+..+.+++.+.......+.++++
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 99999999999999999999999 99999766 555555555444455666554443334444443
No 240
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.06 E-value=1.1e-10 Score=120.66 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=41.7
Q ss_pred hcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1022 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1022 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
+.+|++|+||||++ ++|+.....+.+++....++|+++|++||.+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45999999999995 99999999999999998878999999999864
No 241
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.06 E-value=1.1e-12 Score=134.34 Aligned_cols=139 Identities=16% Similarity=0.209 Sum_probs=83.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCCCC-CeeEEEEEECCccCC------hhhhc-ceEE----EEccCCCCCCCCCHHHHH
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKN------QETFA-RVSG----YCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~~~-g~~~G~i~i~g~~~~------~~~~~-~~~g----y~~q~~~~~~~~tv~e~l 961 (1119)
++++|+|+||||||||+++|+|...+ |...|.|.++|.++. ...++ +.+| +++|++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------- 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------- 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---------
Confidence 57999999999999999999996442 234799999998732 22344 3466 788876543
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHH-cCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE-------EEeCC
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMEL-VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1033 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il-------lLDEP 1033 (1119)
++. . .. +....+++.++. +. . .|..++. +||+|||||++|||+++.+|+|. .=|.|
T Consensus 74 -----i~~-~--~~-~~~a~l~~~i~~~l~--g-~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 74 -----IRR-V--SE-EEGNDLDWIYERYLS--D-YDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----EEE-C--CH-HHHTCHHHHHHHHTT--T-CSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----Eec-C--Ch-hhhhCHHHHHHhhCC--C-CCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 110 0 00 101124455554 43 2 3455442 59999999999999999999873 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 001228 1034 TSG---LDARAAAIVMRTVRNTVDTGR 1057 (1119)
Q Consensus 1034 tsg---LD~~~~~~i~~~l~~~~~~g~ 1057 (1119)
..+ +|....+.+.+.|.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334445667777766655553
No 242
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.03 E-value=6.7e-11 Score=133.80 Aligned_cols=144 Identities=15% Similarity=0.072 Sum_probs=95.2
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hhcc--eEEEEccCCCCCCCCCHHH
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TFAR--VSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~~~--~~gy~~q~~~~~~~~tv~e 959 (1119)
..++|++++|+||||||||||++.|+|... +..|+|.+.|.+.... .+++ .+.+++|.....|..+++|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 347899999999999999999999999654 2358899998875321 1223 3559999988888999999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
++.+..... .+. -+++..|+.+..+. =.++.-.|++++..++.+++||.+|. .
T Consensus 203 ~l~~~~~~~--~d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t~-~-- 255 (328)
T 3e70_C 203 AIQHAKARG--IDV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALAG-N-- 255 (328)
T ss_dssp HHHHHHHHT--CSE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGGT-T--
T ss_pred HHHHHHhcc--chh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHHH-H--
Confidence 997653211 110 00111222111111 12344458999998888889995554 3
Q ss_pred HHHHHHHHHHHHHH-hCCCeEEEEecC
Q 001228 1040 RAAAIVMRTVRNTV-DTGRTVVCTIHQ 1065 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1065 (1119)
.+.+.++.+. ..+.|+|++||.
T Consensus 256 ----~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 ----AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ----HHHHHHHHHHHHSCCCEEEEECG
T ss_pred ----HHHHHHHHHHHhcCCCEEEEeCc
Confidence 3444555554 348999999995
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.00 E-value=9.7e-13 Score=153.53 Aligned_cols=145 Identities=13% Similarity=0.034 Sum_probs=96.1
Q ss_pred cccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcce
Q 001228 869 EMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARV 941 (1119)
Q Consensus 869 ~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~ 941 (1119)
.++++++.++...+|+++ + .++|++++|+|||||||||||++|+|...+ ..|.|.+.+.++.. ....+.
T Consensus 145 ~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccc
Confidence 445555556556689998 5 489999999999999999999999996542 35788888766531 122333
Q ss_pred EEEEc---------cCCCCC--CC----CCHHHHHHHHHHhhc----CCCccHHHHHHHHHHHHHHcCCCCccccccCCC
Q 001228 942 SGYCE---------QNDIHS--PY----VTVYESLLYSAWLRL----SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002 (1119)
Q Consensus 942 ~gy~~---------q~~~~~--~~----~tv~e~l~~~~~l~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 1002 (1119)
+|+.+ |+|... .. .|+.+++.+...-+. ...... .. +.+.+..+++.+.. .
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~---~~-~i~rL~~lgl~~~~--~---- 290 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA---VG-AVTRLRDMGIEPFL--I---- 290 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS---HH-HHHHHHHHTCCHHH--H----
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH---HH-HHHHHHHcCCcHHH--H----
Confidence 45544 877542 33 588888877542110 000111 11 22346667776542 2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+..|||||+|| ||++|+.+|++..-
T Consensus 291 -~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 -SSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp -HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred -HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 24699999999 99999999998763
No 244
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.00 E-value=9.5e-11 Score=131.58 Aligned_cols=124 Identities=11% Similarity=0.085 Sum_probs=80.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCCcc--c-ceEEEeccCCCCC-----CCCCHH
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP--Q-RTCAYISQHDLHH-----GEMTVR 263 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV~ 263 (1119)
.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+.... + +.+||++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 88876 899999 8987654321 1 2479999998553 68999
Q ss_pred HHH--HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc-cccccccCccC
Q 001228 264 ETL--DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMR 340 (1119)
Q Consensus 264 E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~ 340 (1119)
|++ .|. ... +. . |+. .+..+. .+....++.+++.+||++ .++..+..
T Consensus 238 e~l~~~f~-~~~------~~-~--c~~---~~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~~~~--- 287 (302)
T 2yv5_A 238 REVRNYFR-EFL------RY-Q--CKY---PDCTHT--------------NEPGCAVKEAVKNGEISCERYKSYLKI--- 287 (302)
T ss_dssp GGGGGGCG-GGH------HH-H--HHS---TTCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHHHHH---
T ss_pred HHHHHHHH-HHH------Hc-c--CCC---CCCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHHHHH---
Confidence 888 342 100 00 0 000 000000 011224677899999986 67777766
Q ss_pred CCCChHHHHHHHHHH
Q 001228 341 RGISGGQKKRVTTGE 355 (1119)
Q Consensus 341 rGLSGGqkkRvsia~ 355 (1119)
|||.++|++.||+
T Consensus 288 --ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 288 --IKVYLEEIKELCR 300 (302)
T ss_dssp --TTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHhc
Confidence 9999999999986
No 245
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.99 E-value=3.3e-13 Score=161.62 Aligned_cols=181 Identities=11% Similarity=0.022 Sum_probs=105.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCC-------
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS------- 952 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~------- 952 (1119)
..+++++++.+++|+.++|+||||||||||+++|+|...+ .+|.|.++|.+.-.......+++..|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3589999999999999999999999999999999997753 4688999886521111123455555543321
Q ss_pred ---------------CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC--ccccccC-CC----CCCCCCHH
Q 001228 953 ---------------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVG-LP----GVSGLSTE 1010 (1119)
Q Consensus 953 ---------------~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~-~~----~~~~LS~G 1010 (1119)
..++..|++.+..................+.++++.+...+ +...... .. ....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 23333443332211111000000000001223333333211 0000000 00 01247999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE--EecCccHHHHHhhc
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAFD 1075 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~d 1075 (1119)
|+||++++. + | |+|||+.+...+++.|.++...|+|+++ +||+++ ++...++
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 999887752 1 7 9999999888887777777666899985 899864 4544454
No 246
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.99 E-value=6.8e-10 Score=128.43 Aligned_cols=74 Identities=23% Similarity=0.365 Sum_probs=64.1
Q ss_pred CCCChHHHHHH------HHHHHHhcC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 341 RGISGGQKKRV------TTGEMLVGT-ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 341 rGLSGGqkkRv------sia~al~~~-p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
..+|||||||+ ++|++++.+ |+++||||||+|||+..+..+.+.|+++.. +.+++++.|++ ++..++|+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~~d~ 354 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHR--ELEDVADV 354 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCG--GGGGGCSE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChH--HHHhhCCE
Confidence 45999999988 567889999 999999999999999999999999988642 45788888775 46789999
Q ss_pred EEEEc
Q 001228 414 IILLS 418 (1119)
Q Consensus 414 i~lL~ 418 (1119)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 247
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.99 E-value=1.1e-10 Score=120.57 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=39.5
Q ss_pred hcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 001228 358 VGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (1119)
Q Consensus 358 ~~~p~illlDEPts-gLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 406 (1119)
+.+|++|+||||++ ++|+.....+.+.+..... .++++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 45899999999985 9999999988888887654 478888888887654
No 248
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.97 E-value=7.1e-12 Score=146.23 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=90.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------ccceEEEec-----
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYIS----- 251 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~----- 251 (1119)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++.... ..+.++|.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4578888 4 4899999999999999999999999999876 899999988764211 112334433
Q ss_pred ----cCCCC--CCC----CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHH
Q 001228 252 ----QHDLH--HGE----MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321 (1119)
Q Consensus 252 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1119)
|++.. +++ .|+.+++.++..-...-.. + .. .+ .....+ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t------l---------h~-~~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST------L---------HT-NT--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE------E---------CC-SS--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc------c---------ch-hh--------------HHHHHH-H
Confidence 77654 344 5788887764311000000 0 00 00 001122 3
Q ss_pred HHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeE
Q 001228 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365 (1119)
Q Consensus 322 l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~ill 365 (1119)
|..+|++... .... |||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~--~~~~-----LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL--ISSS-----LLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH--HHHH-----EEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH--HHHH-----HHHHHHHH--hhhhhcCCCCccC
Confidence 5567776542 3333 99999999 9999999999876
No 249
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.96 E-value=3e-11 Score=134.57 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=82.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHH---h
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAW---L 967 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~---l 967 (1119)
+++.++||+|++|||||||.+.|++.... .| . . ++.+.+++|++.+++. ++++++.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 57889999999999999999999985431 11 0 0 2345566999988764 78888877521 1
Q ss_pred hcCCCccHHHHHHHHHHHHHHcCCC--CccccccCCC-CCCCCCHHHHHHHHHH--HHHhcCCCeEEEeCCCCCCCHH
Q 001228 968 RLSSDVDTKKRKMFVDEVMELVELK--SLNDSMVGLP-GVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~-~~~~LS~Gqrqrl~iA--~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
....+.+.....+...+.++.+... ......+..| ....+||||+||+.+| +++ +|+|||+|||++++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 1100111111122345556655332 0000000000 1246999999999997 555 99999999999999985
No 250
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.95 E-value=4.5e-10 Score=130.32 Aligned_cols=151 Identities=21% Similarity=0.237 Sum_probs=87.2
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhH--cCCCC---CCeeEEEEEECCccC-ChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYIEGDIKISGYPK-NQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L--~g~~~---~g~~~G~i~i~g~~~-~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
+-|++|++++|+||||||||||++.| .+... +|...+.+++++... .....+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~---------------------- 230 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV---------------------- 230 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH----------------------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH----------------------
Confidence 67999999999999999999999954 45432 112235677776542 111000
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH-HHHHHHHHHHHHh--cCCCeEEEeCCCCCCC
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~-Gqrqrl~iA~aL~--~~p~illLDEPtsgLD 1038 (1119)
.....+ .... +++++.+.+. ...+. .+.+.+..+.+++ .+|++|++||||+.+|
T Consensus 231 ~~a~~~----gl~~-------~~vleni~~~------------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 231 SIAQRF----GLDP-------DDALNNVAYA------------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHT----TCCH-------HHHHHTEEEE------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHc----CCCh-------HhHhhcEEEe------------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 000000 0000 0122211110 01222 2344444444443 4699999999999999
Q ss_pred HHHH------------HHHHHHHHHHHhC-CCeEEEEecCcc------------------HHHHHhhceEeEEecC
Q 001228 1039 ARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1039 ~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~d~~l~l~~g 1083 (1119)
.... ..+++.|++++++ |.|||+|+|... ..+...+|.++.|.++
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 7533 5678888888754 999999999721 1134567999999764
No 251
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.92 E-value=7.1e-12 Score=150.08 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=65.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
..+++++++.+++|+.++|+|||||||||||++|+|.++++ +|.|++.|..--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 34789999999999999999999999999999999999886 899999886521111234577777765534456888
Q ss_pred HHHHHhhh
Q 001228 264 ETLDFSGR 271 (1119)
Q Consensus 264 E~l~f~~~ 271 (1119)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88765544
No 252
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.90 E-value=4e-11 Score=134.67 Aligned_cols=123 Identities=14% Similarity=0.197 Sum_probs=80.5
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE---CCccCChh--hhc-ceEEEEccCCCCC-----CCCCH
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKNQE--TFA-RVSGYCEQNDIHS-----PYVTV 957 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i---~g~~~~~~--~~~-~~~gy~~q~~~~~-----~~~tv 957 (1119)
.+.+|++++|+|+||||||||+|+|+ ... +.+|+|.+ +|.+.... ..+ +.+||++|.|.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 765 45799998 88765432 112 2589999998654 67899
Q ss_pred HHHH--HHHH---H-hhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 001228 958 YESL--LYSA---W-LRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVE 1020 (1119)
Q Consensus 958 ~e~l--~~~~---~-l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~a 1020 (1119)
|++ .|.. . .+........+....+.++++.++|.+ ..+... ..||+.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 4431 0 111110111122345889999999975 556653 3599988999999874
No 253
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.89 E-value=2.6e-12 Score=148.27 Aligned_cols=168 Identities=13% Similarity=0.141 Sum_probs=114.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcC------------cCCCCCcceEEEECCccCCC----CcccceE---EEeccC
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGK------------LGKDLRASGKITYCGHELNE----FVPQRTC---AYISQH 253 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~------------~~~~~~~~G~I~~~G~~~~~----~~~~~~~---~yv~Q~ 253 (1119)
.+++|..++|+|+||||||||+++|+|. ..| ..|.|.++|..++. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 5678999999999999999999999993 233 38999998854321 1223333 477788
Q ss_pred CCCCCCCCHHHHH--HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccc
Q 001228 254 DLHHGEMTVRETL--DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (1119)
Q Consensus 254 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 331 (1119)
+-+...++..|.+ .|-+.++. ++.++..+....
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~-------------------------------------------~d~il~Vvd~~~-- 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRA-------------------------------------------VDAIYQVVRAFD-- 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTT-------------------------------------------CSEEEEEEECCC--
T ss_pred cccccCCcHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHHhccc--
Confidence 8777777776655 33222110 011111111111
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEEEecCchhHH
Q 001228 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQM-VHILDVTMIVALLQPAPETY 408 (1119)
Q Consensus 332 dt~vg~~~~rGLSGGqkkRvsia~al~~~p--~illlDEPtsgLDs~~~~~i~~~l~~~-~~~~~~t~ii~~~q~~~~~~ 408 (1119)
|..+ ..+||+. +| +++++|||+.++|+......++.++.. .. .+.|++ .|-..++.
T Consensus 128 d~~i-----~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~---sh~~~~~~ 186 (392)
T 1ni3_A 128 DAEI-----IHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE---MKAKKEEQ 186 (392)
T ss_dssp TTCS-----SCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS---HHHHHHHH
T ss_pred ccee-----eeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc---cccHHHHH
Confidence 2222 2266653 88 999999999999999999999888877 43 355542 45566888
Q ss_pred hhcCeEE-EEcCC-eEEEEcChh
Q 001228 409 DLFDDII-LLSEG-QIVYQGPRD 429 (1119)
Q Consensus 409 ~~~D~i~-lL~~G-~iv~~G~~~ 429 (1119)
++||++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 9999999 99999 888877654
No 254
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=1.3e-09 Score=125.01 Aligned_cols=135 Identities=16% Similarity=0.033 Sum_probs=71.6
Q ss_pred EEEEcCCCCCHHHHHHhHcC-CCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCc
Q 001228 896 TALMGVSGAGKTTLMDVLAG-RKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDV 973 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g-~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~ 973 (1119)
+.|.||||+|||||+++|++ ... +..|.+.++|.+... ...+..+++++|.+.+....+ + .. ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~--~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MG--NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h--------cC--Cc
Confidence 89999999999999999998 333 235778888765421 112345777877654311100 0 00 00
Q ss_pred cHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001228 974 DTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053 (1119)
Q Consensus 974 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~ 1053 (1119)
... .+.+.++.+......+... .||+ +..+|+++|+|||++ ||..+...+.+.+.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 000 1223333321111001110 2565 788999999999999 99999999999998864
Q ss_pred hCCCeEEEEecCcc
Q 001228 1054 DTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1054 ~~g~tvi~~~H~~~ 1067 (1119)
.+.++|+++|+++
T Consensus 163 -~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 163 -KNIRLIMVCDSMS 175 (354)
T ss_dssp -TTEEEEEEESCSC
T ss_pred -CCCEEEEEeCCHH
Confidence 4789999999975
No 255
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.86 E-value=1.1e-08 Score=118.62 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=46.6
Q ss_pred cCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHHhCCcEEEEEEecCc------------------hhHH
Q 001228 359 GTANVLYMDEISTGLDSSTT------------FQICKFLKQMVHILDVTMIVALLQPA------------------PETY 408 (1119)
Q Consensus 359 ~~p~illlDEPtsgLDs~~~------------~~i~~~l~~~~~~~~~t~ii~~~q~~------------------~~~~ 408 (1119)
.+|+++++|||++.+|+... .++++.|+++++..+.|+|++.|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997433 56788899998888889888877611 2245
Q ss_pred hhcCeEEEEcCCe
Q 001228 409 DLFDDIILLSEGQ 421 (1119)
Q Consensus 409 ~~~D~i~lL~~G~ 421 (1119)
+.+|.++.|..++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999987653
No 256
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.83 E-value=3.6e-09 Score=105.89 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=29.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356666 8999999999999999999999998764
No 257
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=2.3e-09 Score=122.91 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=69.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc-CcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCc
Q 001228 200 TLLLGPPGAGKTTLMLALAG-KLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 277 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG-~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 277 (1119)
++|.||||+|||||+++|+| .+.+. .|.+.++|.+..... ....++|++|.+.+.-..+ + .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcc
Confidence 89999999999999999999 45655 799999987654322 2356788888654311100 0 00000
Q ss_pred hhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHH
Q 001228 278 RYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357 (1119)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al 357 (1119)
. ..+. ...+.+.+..++.. .+ .+|| +
T Consensus 106 ~-------------------~~~~--------------~~i~~~~~~~~~~~----~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------IVIQ--------------ELLKEVAQMEQVDF----QD------SKDG-----------L 131 (354)
T ss_dssp H-------------------HHHH--------------HHHHHHTTTTC-------------------------------
T ss_pred h-------------------HHHH--------------HHHHHHHHhccccc----cc------cccc-----------c
Confidence 0 0000 00111111111111 11 2566 7
Q ss_pred hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 001228 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (1119)
Q Consensus 358 ~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 404 (1119)
.++|+++++|||++ ||..+...+.+.+.+... +.++|++.|++.
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~--~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSK--NIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT--TEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC--CCEEEEEeCCHH
Confidence 88999999999999 999999999999987542 567777777765
No 258
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.82 E-value=7e-12 Score=138.85 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=94.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCC-CCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 259 (1119)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999 999999999999999999998754 789999987643321 23466777653 44555
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+++.|++.+.+..++. ... + .+....++.+..
T Consensus 106 i~~~Deid~~~~~r~~--------------~~~--------------------------~------~~~~~~~~~l~~-- 137 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD--------------RET--------------------------G------ASVRVVNQLLTE-- 137 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHHHHHHHH--
T ss_pred eEeeehhhhhhcccCC--------------Ccc--------------------------h------HHHHHHHHHHHh--
Confidence 5666665442110000 000 0 011111223333
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEIST------------GLDSSTTFQICKFL 385 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPts------------gLDs~~~~~i~~~l 385 (1119)
|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 138 ---Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 138 ---MDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp ---HHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred ---hhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 9999999999999999999975 88864 23666666666544
No 259
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.80 E-value=5.6e-10 Score=125.27 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=51.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCCcc---cceEEEeccCCC-----------
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP---QRTCAYISQHDL----------- 255 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~---~~~~~yv~Q~d~----------- 255 (1119)
.+.+|++++|+|||||||||||++|+|...|. +|+|.+ +|++.+.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999886 899999 8887754321 135799999974
Q ss_pred -----CCCCCCHHHHHHHh
Q 001228 256 -----HHGEMTVRETLDFS 269 (1119)
Q Consensus 256 -----~~~~lTV~E~l~f~ 269 (1119)
++|++|| ||+.|.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5788899 888774
No 260
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=9.8e-12 Score=143.45 Aligned_cols=171 Identities=12% Similarity=0.086 Sum_probs=113.4
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCC----------CCCeeEEEEEECCccCChh----hhcce---EEEEccCCCC
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYIEGDIKISGYPKNQE----TFARV---SGYCEQNDIH 951 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~----------~~g~~~G~i~i~g~~~~~~----~~~~~---~gy~~q~~~~ 951 (1119)
.+++|..+||+|+||||||||+++|+|.. +..+..|.+.+.|...... ..++. ..++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 1235679999987432110 01122 2467777777
Q ss_pred CCCCCHHHHH--HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCC--Ce
Q 001228 952 SPYVTVYESL--LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP--SI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l--~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p--~i 1027 (1119)
.+..+..|++ .|...++.. +.++..++..+ +.. +..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 7766766655 443333321 01111111111 111 22355542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCeEEEEecCccHHHHHhhceEe-EEecCc-EEEEecCCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELL-LLKRGG-RVIYAGPLGH 1094 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~~l-~l~~gG-~v~~~g~~~~ 1094 (1119)
+++|||+.++|+......++.+++. ...|.||+ +|... ++.+.||++. +|. .| ++++.|+...
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~-~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLT-ETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHH-TTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhc-cCCceeecCCCCH
Confidence 9999999999999999999999988 66677864 99864 6778899998 775 46 7777666543
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.78 E-value=4.1e-11 Score=127.09 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=66.2
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHcCCCCC-CeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhh
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLR 968 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~-g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~ 968 (1119)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|.......... .+......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~-~~~~~~~~------------------- 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEP-RGLLPRKG------------------- 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGG-GTCGGGTT-------------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHH-hcccccCC-------------------
Confidence 578999999999999999999999996531 223566666665543221110 00000000
Q ss_pred cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEeCCC
Q 001228 969 LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPT 1034 (1119)
Q Consensus 969 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA-~aL~~~p~illLDEPt 1034 (1119)
.+...+.. ...+.+..+...+..+...... ...+|+||+|++++| ++++.++.++++|||.
T Consensus 79 ~~~~~~~~----~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDFE----GFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCHH----HHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhHH----HHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 00000111 1122222221111111111111 225899999999998 8888888888888884
No 262
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.77 E-value=4e-11 Score=136.84 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=98.6
Q ss_pred ceeeeceEEEEeCC-------eEEEEEcCCCCCHHHHHHHHhcCcCCCC-CcceEEEECCccCCCC---cccceEEEecc
Q 001228 184 VRILKDVSGIVKPS-------RMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEF---VPQRTCAYISQ 252 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~---~~~~~~~yv~Q 252 (1119)
..++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35778888888776 7899999999999999999999884321 1366666555443211 12356999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc
Q 001228 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1119)
Q Consensus 253 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 332 (1119)
.+.+.+ ++.|++.......+. +.. ... . .....++..+..++|.. ++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~----~i~--~~~----------~--------------~~~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQI----DIM--IGK----------G--------------PSAKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EE
T ss_pred hhhcCH--HHHHHHHHHHHhccc----cee--ecc----------C--------------cccccccccCCCeEEEE-ec
Confidence 877665 788888543221100 000 000 0 00011233444556644 66
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~ 393 (1119)
+.++. ||+|+|+|+.++ .+||+.+..++.+.|++.++..+
T Consensus 158 ~~~~~-----Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 158 TRSGL-----LSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp SCGGG-----SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred CCccc-----CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 77765 999999998654 78888888999999988876544
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.77 E-value=4.9e-11 Score=126.48 Aligned_cols=30 Identities=37% Similarity=0.529 Sum_probs=28.0
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999875
No 264
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.76 E-value=1.1e-11 Score=130.52 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=41.8
Q ss_pred HHH-HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 353 TGE-MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 353 ia~-al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.... .| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~------a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMES------SK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTG------GG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH------hh-c--c-CCceEEEECCC
Confidence 344 677888888999999999999999999988877654211 11 1 1 57899988764
No 265
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.74 E-value=1e-09 Score=122.56 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=44.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCCcc-cce-EEEeccCCCCCC----CCCH
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP-QRT-CAYISQHDLHHG----EMTV 262 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV 262 (1119)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..+.... .+. .+|+.|++.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 345689999999999999999999999998876 899998 8876554321 112 699999987665 6899
Q ss_pred HHHHH
Q 001228 263 RETLD 267 (1119)
Q Consensus 263 ~E~l~ 267 (1119)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8883
No 266
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.71 E-value=2.8e-10 Score=128.26 Aligned_cols=86 Identities=13% Similarity=0.141 Sum_probs=66.4
Q ss_pred eeeccceeee-------------------eCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE---CCccCChhhh
Q 001228 881 QLLHSVSGVF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKNQETF 938 (1119)
Q Consensus 881 ~vL~~vs~~i-------------------~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i---~g~~~~~~~~ 938 (1119)
.++++|++.+ ++|+++||+|+||||||||+++|+|.....+..|+|.+ +|...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 3788999888 89999999999999999999999995330013688888 88775432 3
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHHHHHhh
Q 001228 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLR 968 (1119)
Q Consensus 939 ~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~ 968 (1119)
++.+|++ |...+++.+++.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 3457888 7777778889999988765554
No 267
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.70 E-value=8e-12 Score=138.39 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=93.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh---hhcceEEEEccCC-CCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE---TFARVSGYCEQND-IHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~---~~~~~~gy~~q~~-~~~~~ 954 (1119)
+..+++++++.+++| ++|+||||+|||||+++|+|.... +.+.++|.++... ...+.+++++|.. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 346899999999999 999999999999999999996542 6788998765321 2234466666653 33444
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+++.|++.+....+.. . ... .+....++. ...|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r~~-----~----~~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD-----R----ETG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhcccCC-----C----cch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 5555554322111100 0 000 012222333 2359999999999999999999986 9996
Q ss_pred C------------CCCHHHHHHHHHHH
Q 001228 1035 S------------GLDARAAAIVMRTV 1049 (1119)
Q Consensus 1035 s------------gLD~~~~~~i~~~l 1049 (1119)
. --|...+..|++.+
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 4 23666776666554
No 268
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.70 E-value=2.2e-08 Score=119.00 Aligned_cols=178 Identities=12% Similarity=0.093 Sum_probs=105.9
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEE-EEEECCccCChhhhcce-EEEEccCCCCCCCCCHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIKISGYPKNQETFARV-SGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G-~i~i~g~~~~~~~~~~~-~gy~~q~~~~~~~~tv~ 958 (1119)
..|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+-+...+...+.++ .+... ....
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-
Confidence 368889989999999999999999999999999863210 012 22222222221111111 00000 0000
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEeCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 1036 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~--~~p~illLDEPtsg 1036 (1119)
+ .++.. ..... ....+.++++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~------~l~~g-~l~~~-~~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 Q------NLRTG-KLTPE-DWGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp H------HHHTS-CCCHH-HHHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred H------HHhcC-CCCHH-HHHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 0 01111 12221 223345555555444432222 2358999876 5667776 67999999999987
Q ss_pred CC--------HHHHHHHHHHHHHHHhC-CCeEEEEec---------C--ccH-------HHHHhhceEeEEecC
Q 001228 1037 LD--------ARAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1037 LD--------~~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~~l~l~~g 1083 (1119)
.+ ......+.+.|+.++++ |++||+++| + |.+ .+...+|.+++|.++
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 74 23446777888888744 999999999 2 421 245679999999764
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.69 E-value=1.4e-09 Score=121.57 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=66.3
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE---CCccCChh-hhcce-EEEEccCCCCCC----CCCHH
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKNQE-TFARV-SGYCEQNDIHSP----YVTVY 958 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i---~g~~~~~~-~~~~~-~gy~~q~~~~~~----~~tv~ 958 (1119)
+++.+|++++|+|+||||||||+|+|+|... +..|+|.+ +|...... ...+. .||++|.|.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5678999999999999999999999999765 45788888 67654321 12222 799999987665 6889
Q ss_pred HHHH--HHHH--h----hcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 959 ESLL--YSAW--L----RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 959 e~l~--~~~~--l----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
|++. |... + +........+....+.++++.++|.+...... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3311 1 11110011122345788999999976433221 146677766
No 270
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.67 E-value=1.7e-10 Score=131.59 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=91.1
Q ss_pred ccceeeccceeeeeCC-------cEEEEEcCCCCCHHHHHHhHcCCCCC--CeeEEEEEECCccCCh--hh-hcceEEEE
Q 001228 878 DRLQLLHSVSGVFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYPKNQ--ET-FARVSGYC 945 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~G-------e~~~l~G~nGaGKTTLl~~L~g~~~~--g~~~G~i~i~g~~~~~--~~-~~~~~gy~ 945 (1119)
++..+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.++.. .. .++.++|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3446899999999887 88999999999999999999985411 1234444443332211 01 13468999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhcCCCc--cHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001228 946 EQNDIHSPYVTVYESLLYSAWLRLSSDV--DTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVA 1023 (1119)
Q Consensus 946 ~q~~~~~~~~tv~e~l~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~ 1023 (1119)
.|.+.+.+ ++.|++....... ..+. ........+.+.++.+++.. .... +..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII----- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-----
T ss_pred cchhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-----
Confidence 98877655 7888775332211 1110 01111122333444444433 2222 246999999998655
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001228 1024 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054 (1119)
Q Consensus 1024 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1054 (1119)
.+||+.+...+.++|++.++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHH
T ss_pred -----------eeCCCCCHHHHHHHHHHHHH
Confidence 77888888888888888764
No 271
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.61 E-value=2.3e-09 Score=120.64 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=60.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEE---CCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHh
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITY---CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 269 (1119)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ...+.++|+ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8899999999999999999999999987 65 899999 8876432 123457888 877778889999999886
Q ss_pred hhh
Q 001228 270 GRC 272 (1119)
Q Consensus 270 ~~~ 272 (1119)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 272
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.61 E-value=1.8e-07 Score=100.98 Aligned_cols=61 Identities=21% Similarity=0.102 Sum_probs=45.3
Q ss_pred cCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh-------HHhhcCeEEEEcC
Q 001228 359 GTANVLYMDEISTGL--DSSTTFQICKFLKQMVHILDVTMIVALLQPAPE-------TYDLFDDIILLSE 419 (1119)
Q Consensus 359 ~~p~illlDEPtsgL--Ds~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~-------~~~~~D~i~lL~~ 419 (1119)
.+|+++++|+|++.+ |.....+++..|.++++..+.|++++.|..... +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 655556677777777777788888876655431 4678899999964
No 273
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.60 E-value=5.7e-09 Score=112.91 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=45.8
Q ss_pred HHHHHHHh--cCCCeEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCCeEEEEecCccHH-------HHHhhceEeEEec
Q 001228 1015 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNT-VDTGRTVVCTIHQPSID-------IFEAFDELLLLKR 1082 (1119)
Q Consensus 1015 l~iA~aL~--~~p~illLDEPtsgL--D~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~-------~~~~~d~~l~l~~ 1082 (1119)
+..++.++ .+|+++++|||++.+ |+.....++..+.++ .+.|+|||+++|..... +...+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33444444 579999999999988 554444444445444 46699999999986421 3466899999875
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.60 E-value=2.6e-08 Score=111.44 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=77.8
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHh
Q 001228 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (1119)
Q Consensus 190 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 269 (1119)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. + ....|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r--------------~~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----R--------------AAAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----C--------------HHHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----c--------------HHHHHHH---
Confidence 35556889999999999999999999999998764 677776543210 0 0001111
Q ss_pred hhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHH
Q 001228 270 GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349 (1119)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkk 349 (1119)
....+.+|++. +. ..|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~-----~~-----~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV-----IS-----HSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE-----EC-----CSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE-----Ee-----cCCccCHH
Confidence 11233445542 22 26899999
Q ss_pred HH---HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001228 350 RV---TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (1119)
Q Consensus 350 Rv---sia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~ 390 (1119)
++ ++++++..+|+++++|+|.. ......+++.|+++.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999964 3444556666665544
No 275
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.59 E-value=8.7e-08 Score=106.99 Aligned_cols=128 Identities=19% Similarity=0.090 Sum_probs=84.4
Q ss_pred ccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHH
Q 001228 884 HSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLY 963 (1119)
Q Consensus 884 ~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~ 963 (1119)
++++++ +|++++++|+||+||||++..|++.... ..|++.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~------------------~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAA------------------R-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHH------------------H-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhH------------------H-HHH--
Confidence 678888 9999999999999999999999985431 23566666554321100 0 000
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC-CCCCCHHHH
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1042 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP-tsgLD~~~~ 1042 (1119)
..+.+..++.-+.. + ...+-.+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122334432211 0 01244456788999988899999999999 999999988
Q ss_pred HHHHHHHHHHHhCCCeEEEEe
Q 001228 1043 AIVMRTVRNTVDTGRTVVCTI 1063 (1119)
Q Consensus 1043 ~~i~~~l~~~~~~g~tvi~~~ 1063 (1119)
..+.+..+.+. ...+++++.
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEEe
Confidence 88888877663 344555443
No 276
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.59 E-value=1.5e-07 Score=111.78 Aligned_cols=184 Identities=16% Similarity=0.169 Sum_probs=110.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
..+.|+++.+-+++|++++|.|+||+|||||+..|++...+. .| ..+.|++- +++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~------E~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSL------EMSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEES------SSCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEEC------CCCH
Confidence 456799999899999999999999999999999999876431 22 12455543 2444
Q ss_pred HHHHHHh-hhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 263 RETLDFS-GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 263 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
.+...-. +...+... . .+ ..+...+.+.+. +...++.++..+.. +-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~--~---~l-----~~g~l~~~~~~~---------------~~~a~~~l~~~~l~---i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA--Q---NL-----RTGKLTPEDWGK---------------LTMAMGSLSNAGIY---IDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH--H---HH-----HTSCCCHHHHHH---------------HHHHHHHHHSSCEE---EEC--CT
T ss_pred HHHHHHHHHHHcCCCH--H---HH-----hcCCCCHHHHHH---------------HHHHHHHHhcCCEE---EEC--CC
Confidence 4333210 00001100 0 00 001111111111 12223333322211 111 13
Q ss_pred CCChHHHHHHHHHHHHh--cCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHHhCCcEEEEEEe---------c
Q 001228 342 GISGGQKKRVTTGEMLV--GTANVLYMDEISTGLDS--------STTFQICKFLKQMVHILDVTMIVALL---------Q 402 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~--~~p~illlDEPtsgLDs--------~~~~~i~~~l~~~~~~~~~t~ii~~~---------q 402 (1119)
++|++|.+ +.++.+. .+|+++++|+++...++ .....+.+.|+.+++..+.++|++.| .
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 48999987 5566665 68999999999997742 33467888899999888888777665 1
Q ss_pred --Cc-------hhHHhhcCeEEEEcCCeE
Q 001228 403 --PA-------PETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 403 --~~-------~~~~~~~D~i~lL~~G~i 422 (1119)
|. ..+.+.+|.|++|+.++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 32 146778999999987653
No 277
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.58 E-value=1.3e-08 Score=120.09 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=49.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~ 240 (1119)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 3479999999999 999999999999999999999999987 8999999987654
No 278
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.57 E-value=2.4e-08 Score=111.83 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=72.7
Q ss_pred ceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHH
Q 001228 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSA 965 (1119)
Q Consensus 886 vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~ 965 (1119)
+++..++|++++|+|+||+||||++..|++.... ..|+|.+.+.+.... ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-------------------HHHHH-----
Confidence 4556688999999999999999999999985431 134565554332100 00111
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHH---HHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001228 966 WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1042 (1119)
Q Consensus 966 ~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl---~iA~aL~~~p~illLDEPtsgLD~~~~ 1042 (1119)
+..+.+.+++.. ...+|+|+.+++ +|++++..+|+++|+|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 122334445432 124688999999 89999999999999999974 2333
Q ss_pred HHHHHHHHHH
Q 001228 1043 AIVMRTVRNT 1052 (1119)
Q Consensus 1043 ~~i~~~l~~~ 1052 (1119)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 279
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.54 E-value=1.3e-08 Score=114.11 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=64.5
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE---CCccCChhh--h-cceEEEEccCCC-----------
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKNQET--F-ARVSGYCEQNDI----------- 950 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i---~g~~~~~~~--~-~~~~gy~~q~~~----------- 950 (1119)
|.+.+|++++|+||||||||||+++|+|... +..|+|.+ +|.+..... . .+.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 3456799999999999999999999999876 45799998 787653211 1 135799999975
Q ss_pred -----CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-Cccccc
Q 001228 951 -----HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSM 998 (1119)
Q Consensus 951 -----~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 998 (1119)
++|.+|+ ||+.|... ... .+....+.++++.++|. +..+..
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~-~~~-----~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDC-NHV-----DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTC-CSS-----SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCC-cCC-----CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 4678888 88877521 111 12234578999999995 555554
No 280
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.53 E-value=5.5e-09 Score=128.59 Aligned_cols=159 Identities=20% Similarity=0.242 Sum_probs=99.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCC---------
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD--------- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d--------- 254 (1119)
..++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+... ..++|++|..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45789999999999999999999999999999999999874 2488999887766543 3588988742
Q ss_pred -------------CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHH
Q 001228 255 -------------LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321 (1119)
Q Consensus 255 -------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1119)
+.+..+++.+|+... .+.. .+.+.+ ..... ..
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~--------------------~~~~~v-----------~~~~~---~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVD-NCGR--------------------TKAPFI-----------DATGA---HA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEEC-CTTC--------------------SSCCEE-----------ECTTC---CH
T ss_pred Hhhccchhhhhhcccccccccccceeec-cccC--------------------CCCCEE-----------EcCCC---CH
Confidence 111122222222110 0000 000000 00000 01
Q ss_pred HHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387 (1119)
Q Consensus 322 l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~ 387 (1119)
-+.+|.-..... ...++|+|++|++..+.....++.+|||||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~~-----~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDPF-----QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCCC---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEechh-----hcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 112222111111 124599999999999999999999999999998 898888878777764
No 281
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.48 E-value=2.5e-07 Score=105.69 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCeEEEEecCccH-----
Q 001228 1013 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1068 (1119)
Q Consensus 1013 qrl~iA~aL~~~--p~illLDEPtsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1068 (1119)
+.+.++++++.+ |+++++|||++.+ |+ ...+.+.+.++++ .+.|+|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 456678888765 9999999999998 33 1222444455554 3559999999996431
Q ss_pred ----------HHHHhhceEeEEecCcEEEEec
Q 001228 1069 ----------DIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1069 ----------~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
.+...+|.++.+.+ ++++..|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecC
Confidence 13456788888865 3443333
No 282
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.47 E-value=9.6e-11 Score=130.05 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=82.5
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCC-CC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDI-HS 952 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~-~~ 952 (1119)
+....+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ....+.+++++|... ..
T Consensus 59 ~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 132 (278)
T 1iy2_A 59 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 132 (278)
T ss_dssp HHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSC
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 34456899999999999 89999999999999999998653 4677887754311 112233556666543 44
Q ss_pred CCCCHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 953 PYVTVYESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+.+++.|++......+... .....+....+.+++ ..|||||+|++.|++++..+|++ ||
T Consensus 133 ~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 133 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp SEEEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred CcEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh--CC
Confidence 5667777764322111100 000111122222222 14899999999999999999987 56
Q ss_pred CC
Q 001228 1032 EP 1033 (1119)
Q Consensus 1032 EP 1033 (1119)
++
T Consensus 193 ~~ 194 (278)
T 1iy2_A 193 PA 194 (278)
T ss_dssp HH
T ss_pred Hh
Confidence 55
No 283
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.46 E-value=1.2e-10 Score=127.48 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=82.6
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCC-CCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDI-HSP 953 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~-~~~ 953 (1119)
....+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ....+.+++++|... ..+
T Consensus 36 ~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 36 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSS
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 3446899999999999 99999999999999999998653 4677787754211 111233555666532 445
Q ss_pred CCCHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 954 YVTVYESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
.+++.|++......+... .....+....+.+++ ..|||||+||+.|++++..+|++ +|+
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDP 169 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh--CCH
Confidence 666666663322111100 001111122222222 14789999999999999999987 677
Q ss_pred CCC
Q 001228 1033 PTS 1035 (1119)
Q Consensus 1033 Pts 1035 (1119)
+.-
T Consensus 170 ~l~ 172 (254)
T 1ixz_A 170 ALL 172 (254)
T ss_dssp GGG
T ss_pred HHc
Confidence 654
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.45 E-value=2.9e-07 Score=102.65 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=81.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS 970 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~ 970 (1119)
++|++++|+|+||+||||++..|++.... ..| +.+.++.+++. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47999999999999999999999985421 123 12455555542 234445443321
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 001228 971 SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050 (1119)
Q Consensus 971 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~ 1050 (1119)
+..++.... ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 111221100 1222 23344555 45999999999 99999876655554443
Q ss_pred HHH---hCCCeEEE-EecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1051 NTV---DTGRTVVC-TIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1051 ~~~---~~g~tvi~-~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
-+. ..+.++|+ ++|..+ ++...++++..+..+| ++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEEe
Confidence 322 11233444 378753 5666677666555544 5543
No 285
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.45 E-value=2.4e-07 Score=103.31 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=84.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 274 (1119)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999998653 45 23566666542 2455666543211
Q ss_pred CCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHH
Q 001228 275 VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354 (1119)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia 354 (1119)
.+|++.. .. .+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~~------~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----VC------YT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----BC------SS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----ec------CC-HHHHHHHHH
Confidence 1222210 00 12 233355555
Q ss_pred HHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCc-EEEEEEecCchhHHhhcCeEEEEcCCeEEEE
Q 001228 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI-LDV-TMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425 (1119)
Q Consensus 355 ~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~-~~~-t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~ 425 (1119)
+ +.+++++|+| |+|+|+.....+.+..+-+... ... ++++...+...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 9999986654444333222100 112 2333123444567777776666666777653
No 286
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.44 E-value=9.4e-09 Score=108.09 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=49.1
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCCCHHHHHH
Q 001228 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 191 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56778999999999999999999999999863 3555554433221 1345789999877776666666554
Q ss_pred H
Q 001228 268 F 268 (1119)
Q Consensus 268 f 268 (1119)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
No 287
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.41 E-value=5.4e-07 Score=100.54 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=79.7
Q ss_pred eceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHH
Q 001228 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 188 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+.... .++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~------------------~~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP------------------AAR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH------------------HHH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH------------------hHH-HHHH
Confidence 678887 99999999999999999999999998764 68888766432110 000 0000
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1119)
.+.+..|++.... + .+-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---C----CCCCHHH
Confidence 0112234432110 0 0123345
Q ss_pred HHHHHHHHHHhcCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 001228 348 KKRVTTGEMLVGTANVLYMDEI-STGLDSSTTFQICKFLKQM 388 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEP-tsgLDs~~~~~i~~~l~~~ 388 (1119)
-+|.+++++...+++++++||| +.|+|......+.+..+..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5788999988899999999999 9999988777777665543
No 288
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.39 E-value=8.5e-09 Score=126.89 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=99.0
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCC------
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIH------ 951 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~------ 951 (1119)
+...+++++++.+.+|+.+.|+||||+|||||+++|++..... ..|.+.+.+.+... ....++|+|+....
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 4456899999999999999999999999999999999976432 23778888766532 34557888764310
Q ss_pred ----------------CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHH
Q 001228 952 ----------------SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRL 1015 (1119)
Q Consensus 952 ----------------~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl 1015 (1119)
+..+++.+|+.....-......-. .. .....++++........ ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-AT---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CT---TCCHHHHHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cC---CCCHHhcCceEEechhh-----cCCccccccccc
Confidence 011111111100000000000000 00 00011222221111111 135999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 1016 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051 (1119)
Q Consensus 1016 ~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 1051 (1119)
..++...+++.+|||||... |++.....+.+.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899999888888875
No 289
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.39 E-value=6.6e-09 Score=123.39 Aligned_cols=179 Identities=11% Similarity=0.084 Sum_probs=97.5
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcC--CCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCC-C-CCCHHHH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS-P-YVTVYES 960 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g--~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~-~-~~tv~e~ 960 (1119)
.+++.+.++..+.|.|.+||||||++++|.. ..... .+++.+.+.+.+...+... ..-+.+. + .-.+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~~----~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSVY----EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGGG----TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhhh----ccCCcccceeecCHHHH
Confidence 3677788899999999999999999999864 11111 1333333333222111110 0001110 0 0122222
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHH----------HHHHHHhcCCC-eEE
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRL----------TIAVELVANPS-IIF 1029 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl----------~iA~aL~~~p~-ill 1029 (1119)
...-.++ ..+.+++ .+.++..++.++.+..... ...+|+||+|+. ++++++...|. +++
T Consensus 233 ~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 2111111 1222223 3678888877654321000 013677877652 35666777898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh----CCCeEEEEecCccHH-----HHHhhceEeEE
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPSID-----IFEAFDELLLL 1080 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~~~-----~~~~~d~~l~l 1080 (1119)
+||+++-+|.. ...+.+.+.++++ .|.++|++||+|+.+ +...+...+.+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 99999998843 3455566665543 377999999998732 34455444444
No 290
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.36 E-value=4.5e-07 Score=103.52 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=48.4
Q ss_pred HHHHHHHHhc--CCcEeEEeCCCCCC----------CH---HHHHHHHHHHHH---HHHhCCcEEEEEEecCch------
Q 001228 350 RVTTGEMLVG--TANVLYMDEISTGL----------DS---STTFQICKFLKQ---MVHILDVTMIVALLQPAP------ 405 (1119)
Q Consensus 350 Rvsia~al~~--~p~illlDEPtsgL----------Ds---~~~~~i~~~l~~---~~~~~~~t~ii~~~q~~~------ 405 (1119)
-+.++++++. +|+++++|+|++.+ |+ ..+..+.+.+++ +++..+.|+|++.|-...
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 3557777765 49999999999998 33 222233344444 446667787776553321
Q ss_pred ---------hHHhhcCeEEEEcCCeEEEEcC
Q 001228 406 ---------ETYDLFDDIILLSEGQIVYQGP 427 (1119)
Q Consensus 406 ---------~~~~~~D~i~lL~~G~iv~~G~ 427 (1119)
.+..++|.++.+..++++..|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1456789888888776654443
No 291
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.35 E-value=1.4e-07 Score=98.07 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~ 1052 (1119)
+...+|++++.+|+++++| ||++|..+...+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4567899999999999999 9999999999999888764
No 292
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.34 E-value=5.3e-08 Score=114.84 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=44.2
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+|++|||+|++ ++++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 479999999999 9999999999999999999999755 3468888888764
No 293
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.30 E-value=9.4e-10 Score=122.02 Aligned_cols=76 Identities=25% Similarity=0.374 Sum_probs=55.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC-CCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 260 (1119)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++..... .+.+++++|... ..+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4789999999999 89999999999999999999874 6889998866432211 123555666532 44556
Q ss_pred CHHHHHH
Q 001228 261 TVRETLD 267 (1119)
Q Consensus 261 TV~E~l~ 267 (1119)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 6666664
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.30 E-value=2.1e-08 Score=105.33 Aligned_cols=69 Identities=22% Similarity=0.174 Sum_probs=44.6
Q ss_pred eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 887 s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
|+++++|++++|+||||||||||+++|+|... .+.+++..... ...++.++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56778999999999999999999999999642 23444432211 12245678999987655555544443
No 295
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.28 E-value=5.4e-07 Score=102.60 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=29.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
|=+++|+++.|.||||||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999987654
No 296
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.26 E-value=1.1e-07 Score=98.91 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387 (1119)
Q Consensus 349 kRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~ 387 (1119)
+.+.+|++++.+|+++++| ||++|.....++.+.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999888765
No 297
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.25 E-value=1.3e-09 Score=118.98 Aligned_cols=76 Identities=25% Similarity=0.374 Sum_probs=54.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCC-CCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 260 (1119)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 4789999999999 99999999999999999999874 5888888865432111 12345555553 234455
Q ss_pred CHHHHHH
Q 001228 261 TVRETLD 267 (1119)
Q Consensus 261 TV~E~l~ 267 (1119)
++.|++.
T Consensus 112 ~~~Deid 118 (254)
T 1ixz_A 112 VFIDEID 118 (254)
T ss_dssp EEEETHH
T ss_pred EEehhhh
Confidence 6656653
No 298
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.22 E-value=1.4e-07 Score=112.04 Aligned_cols=166 Identities=11% Similarity=0.102 Sum_probs=90.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC--cCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCC--CHHH
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM--TVRE 264 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~--~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 264 (1119)
.+++.+..+..++|.|++||||||+|++|..- .... .|++.+.+.+...... +....+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhh--------hhhccCCcccceeec
Confidence 37778888999999999999999999998752 2222 4566554444322111 000111221 2222
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc--ccccCccCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD--TMVGDEMRRG 342 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d--t~vg~~~~rG 342 (1119)
+...+.+.. .....++.+ + ...++..|+.+..+ ..+.. .
T Consensus 228 d~~~a~~~L-----~~~~~Emer-----------------------------R-~~ll~~~Gv~~i~~yn~~~~~----~ 268 (512)
T 2ius_A 228 DMKDAANAL-----RWCVNEMER-----------------------------R-YKLMSALGVRNLAGYNEKIAE----A 268 (512)
T ss_dssp SHHHHHHHH-----HHHHHHHHH-----------------------------H-HHHHHHTTCSSHHHHHHHHHH----H
T ss_pred CHHHHHHHH-----HHHHHHHHH-----------------------------H-HHHHHHcCCccHHHHHHHHHH----H
Confidence 222211100 000111111 1 23556666654322 12211 2
Q ss_pred CChHHHHHH----------HHHHHHhcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHH---HHhCCcEEEEEEecCch
Q 001228 343 ISGGQKKRV----------TTGEMLVGTAN-VLYMDEISTGLDSSTTFQICKFLKQM---VHILDVTMIVALLQPAP 405 (1119)
Q Consensus 343 LSGGqkkRv----------sia~al~~~p~-illlDEPtsgLDs~~~~~i~~~l~~~---~~~~~~t~ii~~~q~~~ 405 (1119)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++ .+..|.++|++.+.|..
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 788888753 24455667887 89999999988843 23444444444 44457788888888873
No 299
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.20 E-value=3.6e-07 Score=98.11 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=23.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHh-cCcCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA-GKLGK 223 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~La-G~~~~ 223 (1119)
+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999999 98753
No 300
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.18 E-value=5.7e-08 Score=103.85 Aligned_cols=59 Identities=22% Similarity=0.157 Sum_probs=40.7
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-----------ccceEEEeccC
Q 001228 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----------PQRTCAYISQH 253 (1119)
Q Consensus 191 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-----------~~~~~~yv~Q~ 253 (1119)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 899999999999999999999999987 899999998763211 13468898884
No 301
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.08 E-value=5.4e-07 Score=94.16 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001228 1015 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053 (1119)
Q Consensus 1015 l~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~ 1053 (1119)
...|++++.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999 99999999999988887654
No 302
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.08 E-value=3.8e-06 Score=99.36 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCeEEEEecCcc
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEP----------tsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1067 (1119)
+++++|-.+++|....|.|||+||+ ++|.|......+.+++..+- ..+..||++||+++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44777777777777777663 24678999999874
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.08 E-value=9.3e-07 Score=94.91 Aligned_cols=185 Identities=14% Similarity=0.049 Sum_probs=68.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHc-CCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA-GRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~-g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
+..+++||++++|++++|+||||||||||+++|+ |.... ..+.+.+...+.... .....+|.++++..+..+++.+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~--~~~~~~~~~~~~~~g-~~~g~~~~~~~~~~~~~~~~~~ 91 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN--IVKSVSVTTRAARKG-EKEGKDYYFVDREEFLRLCSNG 91 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C--EEECCCEESSCCCTT-CCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC--cccccccCCCCCCcc-ccCCCeEEEecHHHhhhhhhcC
Confidence 4688999999999999999999999999999999 97531 222222222111110 0112234544332221111111
Q ss_pred HHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHH-HHH-HHHhcCCCeEEEeCCCCC
Q 001228 960 SLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRL-TIA-VELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 960 ~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl-~iA-~aL~~~p~illLDEPtsg 1036 (1119)
++.....+..+ ..... +.++++++.-.. -+.+-.. .-...-++++ .-+ ..++..|+..++||++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~-vild~~~------~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~ 160 (231)
T 3lnc_A 92 EIIEHAEVFGNFYGVPR----KNLEDNVDKGVS-TLLVIDW------QGAFKFMEMMREHVVSIFIMPPSMEELRRRLCG 160 (231)
T ss_dssp CEEEEEEETTEEEEEEC----TTHHHHHHHTCE-EEEECCH------HHHHHHHHHSGGGEEEEEEECSCHHHHHHC---
T ss_pred ceehhhhhccccCCCCH----HHHHHHHHcCCe-EEEEcCH------HHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHH
Confidence 11100000000 00000 113333333110 0111000 0011122322 111 223556677778899999
Q ss_pred CCHHHHHHHHHHHHHHHh-----CCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1037 LDARAAAIVMRTVRNTVD-----TGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~-----~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
.|..+.+.+.+.+++... ....+|++.|+++ ++...+++++-.
T Consensus 161 R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e-~~~~~l~~~i~~ 208 (231)
T 3lnc_A 161 RRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIE-ETADRISNILRA 208 (231)
T ss_dssp -----------CHHHHHHHHTTGGGSSEEEECSSHH-HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHH-HHHHHHHHHHHH
Confidence 998888777776665432 2457888888754 455666666543
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.03 E-value=2.1e-07 Score=97.62 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=48.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCCHHHHHHH
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTVRETLDF 268 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 268 (1119)
+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|+....+.+++.+++..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 556789999999999999999999999975 77888887654211 11235777876555555566666543
No 305
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.02 E-value=2.9e-06 Score=97.42 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=84.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCC-------C-CcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhh
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGKD-------L-RASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSG 270 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~-------~-~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 270 (1119)
.++|+|+||||||||++.|+|..... . ..+|.|.++|.++. .-.+.|++.|.+...-+ ..+.++....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve-~f~~tl~~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVD-AFFVTLSEAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHH-HHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHH-HHHHHHHHHH
Confidence 48999999999999999999986410 0 24789999886432 12245555542211000 0111111100
Q ss_pred hhcCCCchhHHhHHhhHHHHhcCCCCChh--HHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHH
Q 001228 271 RCLGVGTRYELLAELSRREKQAGIKPDPE--IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348 (1119)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqk 348 (1119)
.....-.-++ . .+++ .+. ....+..+++.+++.+..--.|++. .--+|+|++
T Consensus 257 ~aD~il~VvD-------------~-s~~~~~~~~-----------~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~ 310 (364)
T 2qtf_A 257 YSDALILVID-------------S-TFSENLLIE-----------TLQSSFEILREIGVSGKPILVTLNK-IDKINGDLY 310 (364)
T ss_dssp GSSEEEEEEE-------------T-TSCHHHHHH-----------HHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHH
T ss_pred hCCEEEEEEE-------------C-CCCcchHHH-----------HHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHH
Confidence 0000000000 0 0111 110 0112345677777765442223331 112688899
Q ss_pred HHHHHH----HHH-hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001228 349 KRVTTG----EML-VGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (1119)
Q Consensus 349 kRvsia----~al-~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~ 390 (1119)
+|+.++ +.+ ..+|++ +|+|++|......+.+.|.+...
T Consensus 311 ~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 311 KKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 988887 555 333444 89999999999999988877654
No 306
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.01 E-value=5.5e-06 Score=93.60 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=84.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
..+-|+.+.+-++||+++.|.|+||+|||||+.-++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 45578888888999999999999999999999998865421 11 23555543 3555
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
.+... |+ .. . ...+.+.+.. -|.
T Consensus 87 ~ql~~---Rl---------ls----~---------------------------------~~~v~~~~l~---~g~----- 109 (338)
T 4a1f_A 87 EQLAL---RA---------LS----D---------------------------------LTSINMHDLE---SGR----- 109 (338)
T ss_dssp HHHHH---HH---------HH----H---------------------------------HHCCCHHHHH---HTC-----
T ss_pred HHHHH---HH---------HH----H---------------------------------hhCCCHHHHh---cCC-----
Confidence 44431 00 00 0 0000111111 133
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVA 399 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~-~~t~ii~ 399 (1119)
||+++.+|++.|...+.++++++.|+|... ..+|...++++.+.. +..+|+.
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999999999999999999999998643 336666677666655 4454444
No 307
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.99 E-value=2.1e-07 Score=99.37 Aligned_cols=59 Identities=17% Similarity=0.123 Sum_probs=38.6
Q ss_pred eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----------hhhcceEEEEccC
Q 001228 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----------ETFARVSGYCEQN 948 (1119)
Q Consensus 887 s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----------~~~~~~~gy~~q~ 948 (1119)
+++|.+ ++++|+|||||||||||++|+|...+ ..|+|.++|.++.. ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999996542 36788888766411 1134568999874
No 308
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.97 E-value=1e-05 Score=92.76 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=84.2
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCCC---------CCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHH-
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRKT---------GGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYS- 964 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~~---------~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~- 964 (1119)
.++|+|++|||||||++.|+|... -++..|.+.++|.+. .+....|++.+.+. ..+ |...-.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~----~lv-e~f~~tl 252 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPP----QIV-DAFFVTL 252 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCG----GGH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCH----HHH-HHHHHHH
Confidence 399999999999999999999532 113568888888542 12233455443221 112 111000
Q ss_pred HHhhc---------CCCcc--HHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHH----HHH-hcCCCeE
Q 001228 965 AWLRL---------SSDVD--TKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIA----VEL-VANPSII 1028 (1119)
Q Consensus 965 ~~l~~---------~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA----~aL-~~~p~il 1028 (1119)
..++. ..+.. .......+.++++.+++.+..--.+.. .+..+|+++++++.++ +++ ..+|++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 00110 01111 122233456777777765432000000 1234788888888877 555 334454
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVD 1054 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~ 1054 (1119)
+|+|++|......+.+.|.+...
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988653
No 309
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.95 E-value=1.3e-05 Score=94.80 Aligned_cols=34 Identities=38% Similarity=0.650 Sum_probs=29.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 466777777777 7899999999999999999865
No 310
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.94 E-value=1.8e-06 Score=98.34 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=29.5
Q ss_pred eeccce--eeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 882 LLHSVS--GVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 882 vL~~vs--~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
-|+.+- +-+++|+++.|.||+|+|||||+..+++.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 47899999999999999999999999864
No 311
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.92 E-value=5.5e-06 Score=104.35 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEE-ecCccHHHHHhhceEeEEecC
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||+++ .+...++..-++...
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~v~ 268 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLAVP 268 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEECC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCccccc
Confidence 479999999999999999999999999996 999887766666666554445677775 88764 566666654444333
Q ss_pred c
Q 001228 1084 G 1084 (1119)
Q Consensus 1084 G 1084 (1119)
|
T Consensus 269 g 269 (773)
T 2xau_A 269 G 269 (773)
T ss_dssp C
T ss_pred C
Confidence 4
No 312
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.91 E-value=4.8e-06 Score=85.55 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=32.9
Q ss_pred eceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 001228 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224 (1119)
Q Consensus 188 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~ 224 (1119)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999 99999999999999999999987653
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.90 E-value=4.5e-07 Score=95.15 Aligned_cols=55 Identities=24% Similarity=0.167 Sum_probs=37.0
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh--hhcceEEEEccC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE--TFARVSGYCEQN 948 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~--~~~~~~gy~~q~ 948 (1119)
...++|++++|+|+||||||||+++|++.. |.+.++|.+.... ..+...|+++|+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 455789999999999999999999999743 6677887654321 111234666664
No 314
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.87 E-value=7.8e-06 Score=92.37 Aligned_cols=128 Identities=14% Similarity=0.152 Sum_probs=80.4
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
-|+.+..-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.- .++..+.+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEeC------CCCHHHHH
Confidence 5777777899999999999999999999988875211 0 11 11333321 23333322
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
.- +......+.+..+.+ ..||.++.+|+..|...+.++++++.|+|...+|
T Consensus 91 ~R------------------lls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 LR------------------ALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp HH------------------HHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred HH------------------HHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 10 001111111111111 1499999999999999999999999999976533
Q ss_pred HHHHHHHHHHHHh-C-CCeEEEEec
Q 001228 1042 AAIVMRTVRNTVD-T-GRTVVCTIH 1064 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~-~-g~tvi~~~H 1064 (1119)
.|...++++.. . |..+|+|-|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 55555666543 3 677777754
No 315
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.87 E-value=6.8e-05 Score=84.32 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=33.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
..+-|+++.+-+++|+++.|.|+||+|||||+..++..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45568888888999999999999999999999888754
No 316
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.83 E-value=3e-06 Score=95.43 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=60.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------c-----cceEEEe-cc
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------P-----QRTCAYI-SQ 252 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~-----~~~~~yv-~Q 252 (1119)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998764 788988776653211 1 3458888 77
Q ss_pred CCCCCCCCCHHHHHHH
Q 001228 253 HDLHHGEMTVRETLDF 268 (1119)
Q Consensus 253 ~d~~~~~lTV~E~l~f 268 (1119)
.....|..++.+++..
T Consensus 171 ~~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 171 KLNADPASVVFDAIKK 186 (320)
T ss_dssp STTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 7655555566777654
No 317
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.82 E-value=7.7e-06 Score=85.25 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001228 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389 (1119)
Q Consensus 351 vsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~ 389 (1119)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999988888776543
No 318
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.82 E-value=2.1e-05 Score=90.25 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe--cCcc
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 1067 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLD-EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1067 (1119)
..+|++++|++. +.+...++-++++| +|++++|......+.+.+.+... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998776 55556777788999 99999999998888887777643 78888888 7753
No 319
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.79 E-value=6.4e-06 Score=86.28 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=27.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~ 224 (1119)
++++|++++|+||||||||||++.|++.+.++
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998553
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.72 E-value=7.6e-06 Score=84.65 Aligned_cols=27 Identities=37% Similarity=0.600 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
|++++|+||||||||||+++|+|.+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999999864
No 321
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.71 E-value=3.7e-06 Score=91.29 Aligned_cols=37 Identities=32% Similarity=0.507 Sum_probs=34.9
Q ss_pred ceeeccceeeeeC---CcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 880 LQLLHSVSGVFRP---GVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 880 ~~vL~~vs~~i~~---Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
..+|+|+||+|++ |++++|+|++||||||+.++|++.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4699999999999 999999999999999999999974
No 322
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=1.1e-05 Score=84.32 Aligned_cols=39 Identities=33% Similarity=0.170 Sum_probs=25.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
...+++|||+.+++|++++|+|||||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999876
No 323
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.67 E-value=4.1e-06 Score=91.22 Aligned_cols=63 Identities=24% Similarity=0.121 Sum_probs=46.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHh---cCcCCCCCcceEEE--------ECCccCCCCc----ccceEEEe
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA---GKLGKDLRASGKIT--------YCGHELNEFV----PQRTCAYI 250 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~La---G~~~~~~~~~G~I~--------~~G~~~~~~~----~~~~~~yv 250 (1119)
++++++ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 887665 89998 8888774321 13457788
Q ss_pred ccCC
Q 001228 251 SQHD 254 (1119)
Q Consensus 251 ~Q~d 254 (1119)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 7653
No 324
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.66 E-value=1.2e-07 Score=112.79 Aligned_cols=76 Identities=22% Similarity=0.242 Sum_probs=51.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh---hhcceEEEEccCCC-CCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE---TFARVSGYCEQNDI-HSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~---~~~~~~gy~~q~~~-~~~~~ 955 (1119)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.+++++|... ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 45789999999999 89999999999999999998653 35677887653211 11223445555543 33444
Q ss_pred CHHHHH
Q 001228 956 TVYESL 961 (1119)
Q Consensus 956 tv~e~l 961 (1119)
.+.|++
T Consensus 127 l~IDEI 132 (499)
T 2dhr_A 127 VFIDEI 132 (499)
T ss_dssp EEEECG
T ss_pred EEEehH
Confidence 444444
No 325
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.65 E-value=4.5e-07 Score=107.93 Aligned_cols=75 Identities=24% Similarity=0.359 Sum_probs=52.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC-CCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 260 (1119)
.+++++++.+++| ++|+||||+|||||+++|+|... .+.+.++|.++.+... .+.+.+++|... ..|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 3688999999999 89999999999999999999874 5788898877643211 123445555432 33444
Q ss_pred CHHHHH
Q 001228 261 TVRETL 266 (1119)
Q Consensus 261 TV~E~l 266 (1119)
.+.+++
T Consensus 127 l~IDEI 132 (499)
T 2dhr_A 127 VFIDEI 132 (499)
T ss_dssp EEEECG
T ss_pred EEEehH
Confidence 444444
No 326
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.61 E-value=1.6e-05 Score=98.47 Aligned_cols=133 Identities=15% Similarity=0.066 Sum_probs=72.9
Q ss_pred eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---hhhhcceEEEEccCCCCCCCCCHHHHHHH
Q 001228 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTVYESLLY 963 (1119)
Q Consensus 887 s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~ 963 (1119)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|.... ....++.+++..|...+... ++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------ 74 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------ 74 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE------
Confidence 3567889999999999999999999999632211123555 3443321 12223334443332211100 00
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1043 (1119)
...+.| .||-..++ .......-..+.-++++| |+.|+++.+..
T Consensus 75 ---------------------------~~nliD----TpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 75 ---------------------------RVFLLD----APGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ---------------------------EEEEEE----CCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ---------------------------EEEEEe----CCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 001112 12211222 122233336778889999 99999998874
Q ss_pred HHHHHHHHHHhCCCeEEEEecCccH
Q 001228 1044 IVMRTVRNTVDTGRTVVCTIHQPSI 1068 (1119)
Q Consensus 1044 ~i~~~l~~~~~~g~tvi~~~H~~~~ 1068 (1119)
.+ +.+...+..+|++.|..+.
T Consensus 118 ~~----~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 AW----TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HH----HHHHHTTCCEEEEEECGGG
T ss_pred HH----HHHHHccCCEEEEecCCch
Confidence 33 3333458889999998663
No 327
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.61 E-value=3.3e-06 Score=88.50 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=42.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEE--EECCccCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI--TYCGHELN 239 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I--~~~G~~~~ 239 (1119)
.+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 345566777778999999999999999999999999986 2 5776 78876543
No 328
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.59 E-value=4.6e-06 Score=90.48 Aligned_cols=39 Identities=44% Similarity=0.559 Sum_probs=36.4
Q ss_pred ceeeeceEEEEeC---CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 184 VRILKDVSGIVKP---SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 184 ~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.++|+|+|+.+++ |+.++|+|++||||||+.++|++.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999 99999999999999999999999764
No 329
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.58 E-value=2.1e-05 Score=80.81 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~ 233 (1119)
+|++++|+||||||||||++.|++.+++. ..|.|.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 68999999999999999999999987532 3565554
No 330
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.57 E-value=1.7e-05 Score=82.92 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=42.2
Q ss_pred HHH-HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1017 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1017 iA~-aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+++ +++.+|++++|||||+++|..+.+.|++.|.+..+. +.++|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678888899999999999999999999999887542 2335621 4578877764
No 331
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.56 E-value=2.7e-05 Score=79.87 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=29.7
Q ss_pred ccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 884 HSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 884 ~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+++++.+.+| +++|+|+||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999 9999999999999999999874
No 332
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.54 E-value=1e-05 Score=88.05 Aligned_cols=57 Identities=23% Similarity=0.136 Sum_probs=44.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHc---CCCCCCeeEEEEE--------ECCccCCh----hhhcceEEEEccCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYIEGDIK--------ISGYPKNQ----ETFARVSGYCEQND 949 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~---g~~~~g~~~G~i~--------i~g~~~~~----~~~~~~~gy~~q~~ 949 (1119)
++|++++|+|+|||||||++++|+ |... +..|.+. .+|.++.. ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 8654 4568877 77776532 24556678888653
No 333
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.52 E-value=4.1e-05 Score=96.44 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPts-gLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++-+++...+.+++++.
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 69999999999999999999999999996 9998877777666654432 23566665555666777778743
No 334
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.51 E-value=1.7e-05 Score=89.38 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=51.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hh-----cceEEEE-ccC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TF-----ARVSGYC-EQN 948 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~-----~~~~gy~-~q~ 948 (1119)
++++++|.+++|++++|+|+||+||||++..|++... ...|+|.+.+.+.... .+ +..++++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3478999999999999999999999999999998543 1236677766665321 12 3457888 555
Q ss_pred CCCCCCCCHHHHH
Q 001228 949 DIHSPYVTVYESL 961 (1119)
Q Consensus 949 ~~~~~~~tv~e~l 961 (1119)
....|..++.+++
T Consensus 172 ~~~~p~~~~~~~l 184 (320)
T 1zu4_A 172 LNADPASVVFDAI 184 (320)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4333333334443
No 335
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=3.6e-05 Score=80.37 Aligned_cols=36 Identities=31% Similarity=0.171 Sum_probs=23.9
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.+++||||++++|++++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 489999999999999999999999999999999964
No 336
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.44 E-value=2.7e-05 Score=83.49 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=35.4
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 001228 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (1119)
Q Consensus 190 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 238 (1119)
-++..++|++++|.|++|||||||+++|+|. .|+|.+++++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445679999999999999999999999997 47788887654
No 337
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.42 E-value=0.00055 Score=78.67 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.6
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEEecCcc
Q 001228 1023 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1067 (1119)
Q Consensus 1023 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1067 (1119)
.+|.+|++||+..- |......+.+.+.+... .+.++|+++|+++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888876654 5788999999863
No 338
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.00032 Score=80.23 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMD-EISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlD-EPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~ 400 (1119)
+|+||+|++. +.+...++-++++| ++..|+|......+++.++.... +..++++.
T Consensus 232 ~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 232 RNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp SCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 7999998876 55556778889999 99999999888888777766432 45555555
No 339
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.41 E-value=2.1e-05 Score=82.51 Aligned_cols=71 Identities=7% Similarity=0.047 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHH-HHHhhceEeEEe
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELLLLK 1081 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~d~~l~l~ 1081 (1119)
.+.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.++.. .+.+||+.+|..... ....||.++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678888999998888887654332 3355666666555555432 356888888865311 145678888885
No 340
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.41 E-value=2.1e-05 Score=90.34 Aligned_cols=44 Identities=34% Similarity=0.316 Sum_probs=39.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~ 233 (1119)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999864 566655
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.40 E-value=2.8e-05 Score=81.27 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=39.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEE--EECCcc
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI--KISGYP 932 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i--~i~g~~ 932 (1119)
....+.+++..++|++++|+|+||||||||+++|++... ..|.+ .++|.+
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~ 63 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDN 63 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCch
Confidence 346677888889999999999999999999999998542 12444 777654
No 342
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.40 E-value=3.3e-05 Score=82.73 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=33.3
Q ss_pred eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 887 s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
++..++|++++|+|+||||||||+++|+|. .|+|.+.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~ 53 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEP 53 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCT
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecC
Confidence 445689999999999999999999999986 2557777765
No 343
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.39 E-value=0.00031 Score=80.44 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEec
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1064 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1064 (1119)
.+..++++..+++..+.+|++++|.-..+..|... ....+.++.+...| .+|++++.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999877774344455443 34456666665445 57777776
No 344
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.38 E-value=4.4e-05 Score=78.82 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRKT 918 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~~ 918 (1119)
|++++|+||||||||||+++|+|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999998653
No 345
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.37 E-value=6e-05 Score=78.77 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=25.8
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
++++|++++|+|+||||||||+++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999875
No 346
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.36 E-value=8.2e-05 Score=78.30 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=27.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
No 347
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.35 E-value=0.00019 Score=80.59 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=77.8
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
.-|+++.+-+++|+++.|.|++|+|||||+..++...- . .| ..+.|+.- .++..+.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~------~g---------~~vl~~sl------E~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---D------ND---------DVVNLHSL------EMGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---T------TT---------CEEEEEES------SSCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEEC------CCCHHHH
Confidence 35788888899999999999999999999888874210 0 00 11333321 1233322
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
..-. ......+.+..+.+.. ..||.++++|+..|...+.++++++.|+|...+
T Consensus 112 ~~R~------------------~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~--- 164 (315)
T 3bh0_A 112 IKRL------------------IVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV--- 164 (315)
T ss_dssp HHHH------------------HHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH---
T ss_pred HHHH------------------HHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH---
Confidence 2110 0000011111111100 128889999999999988889999999886442
Q ss_pred HHHHHHHHHHHHHhC-CCe--EEEEec
Q 001228 1041 AAAIVMRTVRNTVDT-GRT--VVCTIH 1064 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~t--vi~~~H 1064 (1119)
..|...++++..+ |.. +|++-|
T Consensus 165 --~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 --NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp --HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred --HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3355555665433 666 777755
No 348
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.35 E-value=0.00019 Score=80.11 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHh--cCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--eEEEEecCccHHHHHhhceEe
Q 001228 1007 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~--~~p~illLDEPtsgLD~~~-~~~i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
+|.|++ .++..+. ..|.|+++ +.+|... ...+.+.+.++.+. |. .+.+++|+-. .+...+|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 898886 4566666 67999998 7899876 66778888888654 43 5666777643 4556666654
No 349
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=7e-05 Score=76.90 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.+|++++|+||||||||||+++|++..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999999854
No 350
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.30 E-value=0.00012 Score=76.70 Aligned_cols=44 Identities=32% Similarity=0.369 Sum_probs=36.2
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCC
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 259 (1119)
.+++|.+++|+|+||||||||.+.|++.++ .+.+++|++.+++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 467899999999999999999999999763 25778888776643
No 351
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.30 E-value=0.0012 Score=73.27 Aligned_cols=27 Identities=48% Similarity=0.760 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++.-++|.||||+|||||.++|++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356788999999999999999999865
No 352
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.27 E-value=0.00091 Score=76.04 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=28.4
Q ss_pred eccce-eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 883 LHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 883 L~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
|+.+- +-+++|+++.|.|++|+|||||+..++.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 5799999999999999999999998886
No 353
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.27 E-value=8.4e-05 Score=75.62 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=30.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 237 (1119)
.+|++++|+|||||||||+++.|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999874 567776644
No 354
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.26 E-value=6.5e-05 Score=78.61 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=33.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 237 (1119)
.++|++++|+||||||||||++.|++.+++. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4678999999999999999999999988654 6777665443
No 355
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.26 E-value=0.0001 Score=76.61 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=25.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999999865
No 356
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.25 E-value=5.2e-05 Score=93.91 Aligned_cols=47 Identities=32% Similarity=0.338 Sum_probs=33.9
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC
Q 001228 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (1119)
Q Consensus 191 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~ 239 (1119)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|....
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~ 49 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTT 49 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccc
Confidence 3456789999999999999999999999765431 235777 5665443
No 357
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.23 E-value=0.00096 Score=75.22 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=29.9
Q ss_pred eeeceE-EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 186 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
-|+.+- +-+++|+++.|.||||+|||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344443 678999999999999999999999998753
No 358
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.22 E-value=6.3e-05 Score=86.38 Aligned_cols=143 Identities=12% Similarity=0.043 Sum_probs=79.1
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCC-CCCCCHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIH-SPYVTVYE 959 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~-~~~~tv~e 959 (1119)
.+|+++++.+++|++++|+||||||||||+++|+|.. .|.+.....+ ...+...+|+++|...+ +..++...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4899999999999999999999999999999999843 3454431211 11112235666666532 22222111
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHH---cCCCC-cc---cccc--C--CCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMEL---VELKS-LN---DSMV--G--LPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~---~~l~~-~~---~~~~--~--~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
.+ .+.............+...++- +.+.. .. +... + ......+++|+++|+..+++++.+|+++
T Consensus 230 ~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 10 0100000000001112233320 00110 00 1000 0 0013458999999999988888999987
Q ss_pred E-EeCCCC
Q 001228 1029 F-MDEPTS 1035 (1119)
Q Consensus 1029 l-LDEPts 1035 (1119)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 6 999987
No 359
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.22 E-value=0.00034 Score=80.15 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=27.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
..+|+++++.++ .++|+|++||||||||++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
No 360
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.20 E-value=0.0017 Score=73.76 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=29.6
Q ss_pred eeeceE-EEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 186 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344443 57999999999999999999999999875
No 361
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.17 E-value=0.0014 Score=72.54 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH----------HHHHHHHHHHHHh----CCCeEEEEecCc
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARA----------AAIVMRTVRNTVD----TGRTVVCTIHQP 1066 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~----------~~~i~~~l~~~~~----~g~tvi~~~H~~ 1066 (1119)
+++++.+..++.+...+|.+||+||+.+-++... ...+...+..... .+..||++++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 4577777788888888999999999987765422 2233333333211 235678888875
No 362
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.11 E-value=0.0027 Score=72.80 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.++|.||+|+|||||++.+++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999998765
No 363
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.10 E-value=0.0011 Score=74.71 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=28.4
Q ss_pred eccce-eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 883 LHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 883 L~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
|+.+- +-+++|+++.|.|++|+|||||+..++.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 44443 6799999999999999999999998875
No 364
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.09 E-value=0.0023 Score=75.45 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=33.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
..-|+.+.+=+++|+++.|.|+||+|||||+..++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577777779999999999999999999999888754
No 365
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.07 E-value=0.00018 Score=75.58 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.7
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRKT 918 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~~ 918 (1119)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998654
No 366
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.07 E-value=0.00025 Score=70.47 Aligned_cols=29 Identities=28% Similarity=0.658 Sum_probs=24.1
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHc
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~ 914 (1119)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344556666 89999999999999999986
No 367
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.04 E-value=0.00013 Score=87.94 Aligned_cols=42 Identities=33% Similarity=0.380 Sum_probs=36.2
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-EEE-ECCcc
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KIT-YCGHE 237 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G-~I~-~~G~~ 237 (1119)
.+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999999875 55 675 77754
No 368
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.04 E-value=0.00031 Score=69.78 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=24.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG 219 (1119)
+.++.+.+| +++|+|||||||||+|++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 345556665 999999999999999999974
No 369
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.00 E-value=7.7e-05 Score=83.68 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
+++|+||||||||||+++|++.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999998863
No 370
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.97 E-value=0.00025 Score=71.81 Aligned_cols=27 Identities=44% Similarity=0.643 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
No 371
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.97 E-value=0.00039 Score=72.80 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=26.5
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.+++|++++|+|++|||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999864
No 372
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.96 E-value=6e-05 Score=84.58 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=35.2
Q ss_pred cccceeeccceeeeeCCc------EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 877 EDRLQLLHSVSGVFRPGV------LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge------~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
++..+.|++++..|..++ ++||+||||||||||+++|.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344567888888888877 99999999999999999999853
No 373
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.93 E-value=0.00043 Score=81.49 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=38.1
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1023 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1023 ~~p~illLDEPtsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
.+|++||+||+..-.+. .++..+..++..+.+.|+.||+++|++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 38999999999887664 6778889999988888999999999853
No 374
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.91 E-value=0.00031 Score=82.74 Aligned_cols=47 Identities=4% Similarity=0.184 Sum_probs=35.1
Q ss_pred cCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 001228 359 GTANVLYMDEISTGLDS-STTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (1119)
Q Consensus 359 ~~p~illlDEPtsgLDs-~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 406 (1119)
.++++||+||+..-.+. .++..+...+..+.. .++.+|++.+.|..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQK 240 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHH
Confidence 38999999999887664 567778888877653 467788887776544
No 375
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.91 E-value=0.00095 Score=77.76 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999964
No 376
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.89 E-value=0.0012 Score=73.68 Aligned_cols=29 Identities=45% Similarity=0.741 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++++.-++|.||||+|||||.++|++.+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 46788899999999999999999998763
No 377
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.87 E-value=0.0029 Score=68.49 Aligned_cols=34 Identities=38% Similarity=0.744 Sum_probs=24.9
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 55555555555 88999999999999999999864
No 378
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.84 E-value=0.00039 Score=72.30 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.+|++++|+||||||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999753
No 379
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.79 E-value=0.00043 Score=70.26 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=29.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
.+|++++|+|+||||||||+++|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 578999999999999999999999742 455666644
No 380
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.76 E-value=0.00014 Score=82.67 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=39.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEEC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~ 234 (1119)
..+++++++.+.+|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~ 90 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVI 90 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEE
Confidence 34678888888999999999999999999999999987653 5555543
No 381
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.76 E-value=0.00021 Score=74.61 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=30.6
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
..++|++++|+|+||||||||+++|++.... ..|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEecc
Confidence 3578999999999999999999999985421 1244555443
No 382
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.74 E-value=0.00039 Score=79.27 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=32.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 237 (1119)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999987654 6777665543
No 383
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.72 E-value=0.0011 Score=83.94 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=27.5
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+.+++|+.+.|+||||+|||||+++|++..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999999865
No 384
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.71 E-value=0.0011 Score=84.02 Aligned_cols=32 Identities=50% Similarity=0.700 Sum_probs=28.8
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
+.+++|+-++|.||||+|||||+++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998753
No 385
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.69 E-value=0.014 Score=66.34 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+=+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998887654
No 386
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.68 E-value=0.00062 Score=72.75 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=27.7
Q ss_pred eeeceEEEEe---CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 186 ILKDVSGIVK---PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 186 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
-|.++|+.+. +|.+++|.||+||||||+++.|+..+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3677788776 8999999999999999999999998753
No 387
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.66 E-value=0.00048 Score=78.01 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=30.5
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
|+.+.+.+|+.++|+|++|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999873
No 388
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.63 E-value=0.00048 Score=78.92 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999974
No 389
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.63 E-value=0.0024 Score=71.09 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=26.2
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+.++++.-+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788889999999999999999999743
No 390
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.59 E-value=0.00062 Score=68.81 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
No 391
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.57 E-value=0.00028 Score=80.24 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=34.6
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
...+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34588999999999999999999999999999999874
No 392
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.57 E-value=0.0036 Score=72.84 Aligned_cols=35 Identities=31% Similarity=0.270 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~ 233 (1119)
++.+++++||+||||||++..|++.+.+. .++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE
Confidence 68899999999999999999999988653 455544
No 393
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.56 E-value=0.0048 Score=68.57 Aligned_cols=28 Identities=46% Similarity=0.625 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
|...++|.||||+|||||.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4567899999999999999999998754
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.55 E-value=0.00059 Score=69.60 Aligned_cols=39 Identities=36% Similarity=0.348 Sum_probs=30.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce--EEEECCcc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG--KITYCGHE 237 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G--~I~~~G~~ 237 (1119)
++|++++|.|++||||||+.+.|++.+.+ .| .|.++|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChH
Confidence 47899999999999999999999998743 34 45555543
No 395
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.54 E-value=0.0018 Score=76.12 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC------C---CCcceEEEECCccCCCC---cccceEEEeccCCCCCCCCCHHHH
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGK------D---LRASGKITYCGHELNEF---VPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~------~---~~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
-.++|+|+||+|||||++.|+|.... . -..+|.+.++|+++.-. ..++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 46899999999999999999998531 0 02468999999764211 112233444344344444444455
Q ss_pred HHH
Q 001228 266 LDF 268 (1119)
Q Consensus 266 l~f 268 (1119)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 396
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.51 E-value=0.0012 Score=69.23 Aligned_cols=29 Identities=28% Similarity=0.658 Sum_probs=23.9
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHc
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~ 914 (1119)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344556665 89999999999999999885
No 397
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.51 E-value=0.0022 Score=64.85 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999874
No 398
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.50 E-value=0.0023 Score=64.75 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++|..++|+|++|+|||||++.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999985
No 399
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.50 E-value=0.00048 Score=83.27 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=38.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G 235 (1119)
+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 566667766 89999999999999999999999998764 67776655
No 400
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.46 E-value=0.0015 Score=68.46 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=24.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG 219 (1119)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 344556564 999999999999999999864
No 401
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.45 E-value=0.00041 Score=83.56 Aligned_cols=42 Identities=36% Similarity=0.481 Sum_probs=33.3
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEE-EEE-ECCcc
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIK-ISGYP 932 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G-~i~-i~g~~ 932 (1119)
.+++|++++|+|+||||||||+++|+|.... ..| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4789999999999999999999999996532 233 564 77754
No 402
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.41 E-value=0.019 Score=67.48 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=32.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
..+-|+.+.+=+++|+++.|.|+||+|||||+.-++...
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 345677777779999999999999999999988887643
No 403
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.38 E-value=0.00071 Score=71.13 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce--EEEECCcc
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG--KITYCGHE 237 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G--~I~~~G~~ 237 (1119)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 5678999999999999999999999988643 56 67776543
No 404
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.0014 Score=75.09 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.++..++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999987643
No 405
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.28 E-value=0.015 Score=62.11 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.6
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCeEEEEec
Q 001228 1023 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1064 (1119)
Q Consensus 1023 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1064 (1119)
.+++++|+..+.+.++......+..+++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888766666555543322 1258888898
No 406
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.27 E-value=0.0026 Score=65.35 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=20.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788999998887 5689999999999999999974
No 407
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.26 E-value=0.0086 Score=70.44 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=30.6
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
-|+.+.+-+++|+++.|.|++|+|||||+.-++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5777777899999999999999999999988875
No 408
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.25 E-value=0.0032 Score=65.31 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.-+.|.||+|+|||||+++|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999998764
No 409
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.25 E-value=0.0051 Score=69.01 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=31.8
Q ss_pred hcCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 001228 358 VGTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (1119)
Q Consensus 358 ~~~p~illlDEPtsg-LDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 405 (1119)
+.++++||+||+-.- .+..+...+...+..... .+..+|++...+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 356899999998662 244677777788777654 35666776665543
No 410
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.24 E-value=0.0019 Score=65.84 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 237 (1119)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999999865422224777776654
No 411
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.23 E-value=0.0032 Score=64.70 Aligned_cols=49 Identities=27% Similarity=0.362 Sum_probs=27.9
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC------CCCeeEEEEEECC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYIEGDIKISG 930 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~------~~g~~~G~i~i~g 930 (1119)
.+++++++..++. .++++|++|+|||||++.+.+.. +.+...+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 3788999988887 67999999999999999999732 2234456666665
No 412
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.22 E-value=0.0015 Score=68.18 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998764
No 413
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.22 E-value=0.0012 Score=70.52 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.9
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHc
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~ 914 (1119)
+..|+.+.++|+|||||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4678999999999999999888765
No 414
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.19 E-value=0.00062 Score=82.33 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=39.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
..+++++++.+ +|+.++|+||||+|||||+++|++... ...|.|.+.|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 45788888888 899999999999999999999998543 34677776664
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.17 E-value=0.0021 Score=68.63 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=25.6
Q ss_pred eccceeeee---CCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 883 LHSVSGVFR---PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 883 L~~vs~~i~---~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
|.++++.+. +|.+++|.|++||||||+++.|+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 666677666 89999999999999999999999753
No 416
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.16 E-value=0.0022 Score=65.82 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999876
No 417
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.15 E-value=0.0018 Score=68.55 Aligned_cols=37 Identities=41% Similarity=0.460 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~ 233 (1119)
+.+++|+|||||||||+.+.|++.+.-....+|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999876321112566655
No 418
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.13 E-value=0.0013 Score=68.26 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=30.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47888888888875 689999999999999999874
No 419
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.08 E-value=0.0087 Score=65.61 Aligned_cols=27 Identities=48% Similarity=0.770 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++.-++|.||||+|||||.++|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999999875
No 420
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.07 E-value=0.0022 Score=66.45 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=31.1
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 4789999999999999999973
No 421
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.04 E-value=0.00077 Score=77.18 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=35.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 45778888877 999999999999999998864332 344433333221111011234444544333345666
Q ss_pred HHHHH
Q 001228 264 ETLDF 268 (1119)
Q Consensus 264 E~l~f 268 (1119)
+|.-+
T Consensus 101 DTpG~ 105 (361)
T 2qag_A 101 DTPGY 105 (361)
T ss_dssp C----
T ss_pred Eeccc
Confidence 66544
No 422
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.03 E-value=0.0092 Score=67.90 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=28.3
Q ss_pred eeccce--eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 882 LLHSVS--GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 882 vL~~vs--~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 355543 4689999999999999999999988774
No 423
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.01 E-value=0.0022 Score=65.80 Aligned_cols=29 Identities=41% Similarity=0.546 Sum_probs=26.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
++|.+++|+|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999998754
No 424
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.00 E-value=0.0038 Score=73.36 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCCC----------CCeeEEEEEECCccC---ChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRKT----------GGYIEGDIKISGYPK---NQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~~----------~g~~~G~i~i~g~~~---~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
.++|+|+||+|||||++.|+|... ..+..|.+.++|.+. +....++..++.+|....+...+..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 699999999999999999998532 113458888888642 1122233334444444444444444444
Q ss_pred HHHHHh----hcCCCccHHHHHHHHHHHHHHcCCCC--ccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEeCC
Q 001228 962 LYSAWL----RLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEP 1033 (1119)
Q Consensus 962 ~~~~~l----~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~--~~p~illLDEP 1033 (1119)
..+... ........ .+..+.+.++..+..- ..++..... ...-+..+- .-.++..+. ...+++ +
T Consensus 262 ~~ad~vllv~d~~~~~~~--~~~~i~~~l~~~~~~~ilv~NK~Dl~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~----~ 333 (439)
T 1mky_A 262 EKADVVVIVLDATQGITR--QDQRMAGLMERRGRASVVVFNKWDLVV-HREKRYDEF-TKLFREKLYFIDYSPLI----F 333 (439)
T ss_dssp HHCSEEEEEEETTTCCCH--HHHHHHHHHHHTTCEEEEEEECGGGST-TGGGCHHHH-HHHHHHHCGGGTTSCEE----E
T ss_pred hhCCEEEEEEeCCCCCCH--HHHHHHHHHHHcCCCEEEEEECccCCC-chhhHHHHH-HHHHHHHhccCCCCcEE----E
Confidence 332100 00011111 2233445555444321 111111000 001111111 113344443 233444 4
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 001228 1034 TSGLDARAAAIVMRTVRNTVD 1054 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~ 1054 (1119)
+|+++-.....+++.+.+...
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 899988888888887777553
No 425
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.93 E-value=0.011 Score=62.58 Aligned_cols=53 Identities=23% Similarity=0.426 Sum_probs=40.6
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCchhHHhhcCeEEEEc
Q 001228 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (1119)
Q Consensus 360 ~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~i~lL~ 418 (1119)
+++++++||.-. |+.. +++.++.++. .+.++|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 4455566665 3788888877 67789999999999986
No 426
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.92 E-value=0.0023 Score=72.52 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=31.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
|+++.+.+|+.++|+||+|+|||||++.|++.+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
No 427
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.88 E-value=0.003 Score=64.32 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++|++++|+|++||||||+.+.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999974
No 428
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.87 E-value=0.0036 Score=71.90 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.1
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 190 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3446677888999999999999999999987
No 429
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.84 E-value=0.0026 Score=73.91 Aligned_cols=44 Identities=20% Similarity=0.116 Sum_probs=37.5
Q ss_pred eceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc
Q 001228 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (1119)
Q Consensus 188 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 236 (1119)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 567777 89999999999999999999999998764 677777554
No 430
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.84 E-value=0.0039 Score=64.96 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh--HHhhcCeEEEEc
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE--TYDLFDDIILLS 418 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~--~~~~~D~i~lL~ 418 (1119)
+.|+.+|..+++.++.+|+.+.++ .+.+++.....+.+.++.. .+.++|+..+ ...+ ....||.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~-~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVP-LLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECT-TTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEec-hhhhcCcHhhCCEEEEEE
Confidence 678899999999888887654333 2344555555554444321 2445555432 2222 256788887774
No 431
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.83 E-value=0.0032 Score=66.55 Aligned_cols=57 Identities=21% Similarity=0.073 Sum_probs=37.5
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCCCC-CeeEEEEEE--------CCccCCh----hhhcceEEEEccCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKI--------SGYPKNQ----ETFARVSGYCEQND 949 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~~~-g~~~G~i~i--------~g~~~~~----~~~~~~~gy~~q~~ 949 (1119)
+.+++|+|++||||||+.++|++.... -...|++.. +|.++.. ..+++.+|+++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 468999999999999999999974311 133466655 5555431 12345577777653
No 432
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.82 E-value=0.027 Score=63.07 Aligned_cols=139 Identities=19% Similarity=0.163 Sum_probs=0.0
Q ss_pred eccce-eeeeCCcEEEEEcCCCCCHHHHHHhHc--------------CCCCCCee-EEEEEECCccCChhhhcceEEEEc
Q 001228 883 LHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLA--------------GRKTGGYI-EGDIKISGYPKNQETFARVSGYCE 946 (1119)
Q Consensus 883 L~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~--------------g~~~~g~~-~G~i~i~g~~~~~~~~~~~~gy~~ 946 (1119)
|+.+- +-+++|+++.|.|++|+|||||...++ |...+|.. ..-++++...
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~-------------- 152 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG-------------- 152 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS--------------
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC--------------
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcC--
Q 001228 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN-- 1024 (1119)
Q Consensus 947 q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~-- 1024 (1119)
.+...+-......+..+ .+++++.+-+....+.. .+.+.+..++.++.+
T Consensus 153 -------~~~~~~l~~~~~~~g~~-----------~~~~~~~l~~~~~~~~~-----------~~~~~l~~l~~~~~~~~ 203 (322)
T 2i1q_A 153 -------TFRPERIMQMAEHAGID-----------GQTVLDNTFVARAYNSD-----------MQMLFAEKIEDLIQEGN 203 (322)
T ss_dssp -------CCCHHHHHHHHHHHTCC-----------HHHHHHTEEEEECSSHH-----------HHHHHHHTHHHHHHTTC
T ss_pred -------CCCHHHHHHHHHHcCCC-----------HHHHhcCEEEEeCCCHH-----------HHHHHHHHHHHHHhhcc
Q ss_pred -CCeEEEeCCCCCCCH------------HHHHHHHHHHHHHHhC-CCeEEEEec
Q 001228 1025 -PSIIFMDEPTSGLDA------------RAAAIVMRTVRNTVDT-GRTVVCTIH 1064 (1119)
Q Consensus 1025 -p~illLDEPtsgLD~------------~~~~~i~~~l~~~~~~-g~tvi~~~H 1064 (1119)
++++++|.-++-... .....+.+.|++++++ |++||++.|
T Consensus 204 ~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 204 NIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp EEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
No 433
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.82 E-value=0.012 Score=65.91 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=34.5
Q ss_pred hcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 001228 1022 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066 (1119)
Q Consensus 1022 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1066 (1119)
..++.+||+||+-. .-+..+...+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999865 2344778888889988877777788877754
No 434
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.81 E-value=0.011 Score=69.34 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=29.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
-|+.+..-+++|+++.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4777777899999999999999999999887774
No 435
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.81 E-value=0.001 Score=75.07 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=32.1
Q ss_pred eeeceEEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 186 ILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 186 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+|+.++..+++|+. ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56777777788887 99999999999999999999864
No 436
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.79 E-value=0.0041 Score=63.70 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=26.0
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999854
No 437
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.78 E-value=0.031 Score=59.59 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
-++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4789999999999999999997543
No 438
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.76 E-value=0.01 Score=64.98 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.5
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+.++.-+.|.||+|+|||||+++|+...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3556668999999999999999998643
No 439
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.74 E-value=0.00075 Score=77.25 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=27.9
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++.+++++++.| +|+|++|+|||||++.|+|.
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 345788888877 99999999999999999885
No 440
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.73 E-value=0.0037 Score=65.20 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.7
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578899999999999999999998643
No 441
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.72 E-value=0.1 Score=62.26 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=31.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.+-|+.+.+=+++|+++.|.|+||+|||||+.-++-..
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 34567766669999999999999999999988877543
No 442
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.71 E-value=0.0027 Score=67.90 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPts-gLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+...... -.+++++-+-|.....++|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~-~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE-VRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC-CeEEEEecCCCHHHHHHHcC
Confidence 445555543 23578899999999976 68776665455444433221 23555555555544444554
No 443
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.66 E-value=0.004 Score=69.33 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHh--cCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHHhCC
Q 001228 343 ISGGQKKRVTTGEMLV--GTANVLYMDEISTGLDSST-TFQICKFLKQMVHILD 393 (1119)
Q Consensus 343 LSGGqkkRvsia~al~--~~p~illlDEPtsgLDs~~-~~~i~~~l~~~~~~~~ 393 (1119)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+++++...+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcC
Confidence 888886 4566666 78999998 7888766 5566777777765433
No 444
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.66 E-value=0.0027 Score=68.78 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=32.4
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 238 (1119)
..+++.++.|+|+|||||||+.+.|+..+. .+.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 356778999999999999999999998764 24566776543
No 445
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.65 E-value=0.0098 Score=59.38 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 446
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.60 E-value=0.0019 Score=71.69 Aligned_cols=44 Identities=30% Similarity=0.226 Sum_probs=35.9
Q ss_pred ec-eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 001228 188 KD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (1119)
Q Consensus 188 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G 235 (1119)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~ 133 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVG 133 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 45 777766 9999999999999999999999988653 56666644
No 447
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.60 E-value=0.005 Score=63.96 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001228 199 MTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG 219 (1119)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 448
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.53 E-value=0.0046 Score=70.30 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+++.+++|+|++|||||||++.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999973
No 449
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.51 E-value=0.1 Score=58.38 Aligned_cols=28 Identities=46% Similarity=0.692 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.+|..-++|.||+|+|||||.++++..+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3466678999999999999999999876
No 450
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.50 E-value=0.075 Score=60.57 Aligned_cols=30 Identities=40% Similarity=0.629 Sum_probs=26.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+=+++|+++.|.||+|+|||||...++-..
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 367999999999999999999998886543
No 451
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.49 E-value=0.012 Score=59.72 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 452
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.46 E-value=0.027 Score=75.48 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=27.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987653
No 453
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.46 E-value=0.0024 Score=71.97 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=33.0
Q ss_pred eeeccceeeeeCCcE--EEEEcCCCCCHHHHHHhHcCC
Q 001228 881 QLLHSVSGVFRPGVL--TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~--~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.+++.+++.+++|++ ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 378899999999998 999999999999999999973
No 454
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.45 E-value=0.0043 Score=64.43 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 455
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.45 E-value=0.0068 Score=61.82 Aligned_cols=27 Identities=44% Similarity=0.695 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 456
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.44 E-value=0.0074 Score=60.27 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 457
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.41 E-value=0.0051 Score=63.88 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999997
No 458
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.40 E-value=0.0073 Score=61.40 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 459
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.39 E-value=0.0056 Score=61.41 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987753
No 460
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.36 E-value=0.073 Score=60.51 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++..-++|.||+|+|||||.++|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345578999999999999999999765
No 461
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.35 E-value=0.0069 Score=61.28 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
|.++.|.|+|||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 462
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.23 E-value=0.0081 Score=61.43 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=25.5
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
...+|.++.|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999743
No 463
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.21 E-value=0.053 Score=58.25 Aligned_cols=28 Identities=50% Similarity=0.705 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++..-++|.||+|+|||||.++|+..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445688999999999999999998753
No 464
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.20 E-value=0.0088 Score=68.68 Aligned_cols=43 Identities=23% Similarity=0.433 Sum_probs=31.8
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCC---------CCCeeEEEEEECC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRK---------TGGYIEGDIKISG 930 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~---------~~g~~~G~i~i~g 930 (1119)
..+..|..++|+|++|+|||||+++|+|.. +..+..|.+.+.+
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 356788899999999999999999999852 1123457776655
No 465
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.20 E-value=0.0079 Score=61.19 Aligned_cols=38 Identities=37% Similarity=0.336 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCCC-CCeeEEEEEECCc
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIKISGY 931 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~~-~g~~~G~i~i~g~ 931 (1119)
.+++|+|++|||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999987421 2233466666553
No 466
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.19 E-value=0.0032 Score=71.30 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=34.1
Q ss_pred cceeeccceeeeeCCcE--EEEEcCCCCCHHHHHHhHcCC
Q 001228 879 RLQLLHSVSGVFRPGVL--TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~--~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
...+++.++..++.|++ +.|.||+|+||||+++++++.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34588899999999998 999999999999999999974
No 467
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.19 E-value=0.06 Score=61.24 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++..-+.|.||.|+|||||.++|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34556889999999999999999864
No 468
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.18 E-value=0.0024 Score=72.28 Aligned_cols=40 Identities=33% Similarity=0.615 Sum_probs=34.8
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 184 VRILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
..+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4477778888888988 999999999999999999998754
No 469
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.10 E-value=0.0078 Score=64.18 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
No 470
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.06 E-value=0.01 Score=60.71 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998755
No 471
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.068 Score=62.18 Aligned_cols=29 Identities=52% Similarity=0.911 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++|-.=++|.||||+|||+|.++||+.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45556688999999999999999999864
No 472
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.01 E-value=0.029 Score=63.94 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999999863
No 473
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.00 E-value=0.025 Score=59.91 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=40.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec---------CccHHHHHhhceEeEE
Q 001228 1024 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1024 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~~l~l 1080 (1119)
+++++++||.-- |+.. +.+.++.+++.|.+||++-| ..+.++...+|.+..|
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 489999999964 6643 44556666667999999999 5556788889999875
No 474
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.97 E-value=0.0093 Score=63.69 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999865
No 475
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.96 E-value=0.2 Score=67.25 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=30.3
Q ss_pred eeeeceE--EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 185 RILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 185 ~iL~~vs--~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.-|+.+- +=+++|+++.|.||||+|||||...++...
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3466665 369999999999999999999988887553
No 476
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.94 E-value=0.012 Score=59.96 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987654
No 477
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.90 E-value=0.012 Score=59.97 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 478
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.86 E-value=0.01 Score=64.20 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+++|+||||||||||-+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998763
No 479
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.84 E-value=0.014 Score=64.50 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G 235 (1119)
.+.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 467899999999999999999987653 24456654
No 480
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.83 E-value=0.18 Score=60.20 Aligned_cols=34 Identities=18% Similarity=0.023 Sum_probs=29.0
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
-|+.+..-+++|+++.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4666666799999999999999999999877763
No 481
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.78 E-value=0.012 Score=61.51 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=31.0
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEE--EEEECC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG--DIKISG 930 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G--~i~i~g 930 (1119)
..+++|.++.|+|++||||||+.+.|++... +..| .+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 3457899999999999999999999997542 1134 456654
No 482
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.76 E-value=0.014 Score=59.47 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 483
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.71 E-value=0.016 Score=59.98 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 484
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.70 E-value=0.012 Score=60.99 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 485
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.69 E-value=0.013 Score=59.72 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 486
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.60 E-value=0.016 Score=57.90 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 001228 199 MTLLLGPPGAGKTTLMLAL 217 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~L 217 (1119)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 487
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.59 E-value=0.018 Score=59.72 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999987754
No 488
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.55 E-value=0.014 Score=58.92 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999988753
No 489
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.54 E-value=0.018 Score=58.67 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998765
No 490
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.54 E-value=0.013 Score=60.38 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 579999999999999999998763
No 491
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.54 E-value=0.015 Score=59.84 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999976654
No 492
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.53 E-value=0.019 Score=57.97 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 001228 198 RMTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG 219 (1119)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 493
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.44 E-value=0.014 Score=59.07 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|||||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999775
No 494
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.41 E-value=0.017 Score=58.57 Aligned_cols=26 Identities=50% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.+..+.|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46678999999999999999998654
No 495
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.39 E-value=0.012 Score=65.30 Aligned_cols=46 Identities=26% Similarity=0.148 Sum_probs=33.9
Q ss_pred cc-ceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 884 HS-VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 884 ~~-vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
++ +++..+ |++++++|+||+||||++..|++.... ..+.+.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 45 778776 999999999999999999999974321 12445554444
No 496
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.38 E-value=0.16 Score=57.57 Aligned_cols=27 Identities=48% Similarity=0.754 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++..-++|.||+|+|||||.++|+..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344557899999999999999999875
No 497
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.34 E-value=0.12 Score=53.89 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=42.1
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCchhHHhhcCeEEEEc
Q 001228 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (1119)
Q Consensus 360 ~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~i~lL~ 418 (1119)
+.+++++||.-- +|.. +++.++.++.. +..+|++=+ .+++++..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999875 6643 33666666553 889999888 89999999999999886
No 498
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.32 E-value=0.02 Score=58.68 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 499
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.31 E-value=0.067 Score=55.11 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=40.5
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCchhHHhhcCeEEEEc
Q 001228 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (1119)
Q Consensus 360 ~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~i~lL~ 418 (1119)
+.+++++||.-- +|+. +++.++.++.. +..+|++=+ .+++++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999544 6643 35566666654 788888877 77889999999998876
No 500
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.31 E-value=0.021 Score=59.34 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998765
Done!