BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001229
(1119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 224 bits (570), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/376 (36%), Positives = 210/376 (55%), Gaps = 34/376 (9%)
Query: 96 SVKVVVRIRPANDLERDSNQ--TVKKVSSDSLAV----GERKFAFDSVLDSNSNQEDIFQ 149
S+KVV R RP N +E +S V D+ V + F FD V D + Q DIF
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFD 66
Query: 150 VVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLF 209
P V + L GYN ++ +YGQTG+GK+YTM G ++DP R G++PRI +++F
Sbjct: 67 FSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTS---IDDPDGR---GVIPRIVEQIF 120
Query: 210 SEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPKHGFYVENLTEE 269
+ I N I Y R S++EIY E+I DLL NL + ++ G YV+ L E
Sbjct: 121 TSILSSAAN-----IEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEI 175
Query: 270 YVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXXXXR 329
YV+S +++ +++ +G ++R V AT++N +SSRSH +F + +
Sbjct: 176 YVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITI-----TQKNVETGSAKSGQ 230
Query: 330 ICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCL 389
+ LVD+AG+++ ++++E K + KSL+ LG ++ ALT GKS V YR S L
Sbjct: 231 LFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTD---GKSSHVPYRDSKL 287
Query: 390 THLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISEDDVNDL 449
T +L+ESLGGN++ T++ N SP + + E LST+RFG R KSI+N +N +L
Sbjct: 288 TRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNA-------EL 340
Query: 450 SDQIRQLKEELIRAKS 465
S +LK+ L +AK+
Sbjct: 341 SPA--ELKQMLAKAKT 354
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 203/368 (55%), Gaps = 37/368 (10%)
Query: 93 SDPSVKVVVRIRPANDLERDSNQTVKKVSSDSLAVGE--------------RKFAFDSVL 138
S SV+VVVR RP N E+ + + KV + +G+ + F FD+V
Sbjct: 19 SSESVRVVVRCRPMNGKEKAA--SYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVY 76
Query: 139 DSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKE 198
D N+ Q +++ PLV + L G+N ++ +YGQTG+GKTYTM G + DP R
Sbjct: 77 DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEG----IRGDPEKR--- 129
Query: 199 GIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL--DQTQRNLEIKDD 256
G++P F +F+ I R Q Y R S+LEIY E+I DLL DQT+R LE+K+
Sbjct: 130 GVIPNSFDHIFTHISRSQNQQ------YLVRASYLEIYQEEIRDLLSKDQTKR-LELKER 182
Query: 257 PKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXX 316
P G YV++L+ S ++I ++ G +R VGAT++N SSRSH +F +E C
Sbjct: 183 PDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIE--CSE 240
Query: 317 XXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETL 376
++ LVD+AG++R + +KE + SL+ LG ++ AL
Sbjct: 241 VGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVD--- 297
Query: 377 GKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDP 436
GKS + YR S LT LL++SLGGNAK +V N+ P + +V E L+T+R+ R K+I+N P
Sbjct: 298 GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKP 357
Query: 437 VINEISED 444
+NE +D
Sbjct: 358 RVNEDPKD 365
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 202 bits (514), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 209/377 (55%), Gaps = 43/377 (11%)
Query: 92 VSDPSVKVVVRIRPAN--DLERDSNQTVKKVSSDSLAVGERK-------FAFDSVLDSNS 142
++ SVKV VR+RP N ++ RDS ++ S + V ++ F+FD S++
Sbjct: 1 MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHT 60
Query: 143 NQEDI--------FQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSP 194
+ EDI ++ +G ++++A GYNV + +YGQTG+GK+YTM G
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK--------QE 112
Query: 195 RSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD-QTQRNLEI 253
+ ++GI+P++ + LFS I ++ ++Y S++EIY E++ DLL+ + + NL +
Sbjct: 113 KDQQGIIPQLCEDLFSRIN----DTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV 168
Query: 254 KDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESW 313
++ P G YVE+L++ VTSY DI ++ G +R V AT++N SSRSH VF I+ +
Sbjct: 169 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFN-IIFTQ 227
Query: 314 CXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKS--VKEGKYVKKSLAQLGYLVKAL 371
+I LVD+AG++R D G K +KEG + KSL LG ++ AL
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSER--ADSTGAKGTRLKEGANINKSLTTLGKVISAL 285
Query: 372 TQETLG--------KSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTI 423
+ G K++ + YR S LT LLRE+LGGN++ +V +SP + + E LST+
Sbjct: 286 AEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTL 345
Query: 424 RFGQRVKSIRNDPVINE 440
R+ R K IRN +N
Sbjct: 346 RYADRAKQIRNTVSVNH 362
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/376 (34%), Positives = 209/376 (55%), Gaps = 43/376 (11%)
Query: 92 VSDPSVKVVVRIRPAN--DLERDSNQTVKKVSSDSLAVGERK-------FAFDSVLDSNS 142
++ SVKV VR+RP N ++ RDS ++ S + V ++ F+FD S++
Sbjct: 1 MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHT 60
Query: 143 NQEDI--------FQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSP 194
+ EDI ++ +G ++++A GYNV + +YGQTG+GK+YTM G
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK--------QE 112
Query: 195 RSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD-QTQRNLEI 253
+ ++GI+P++ + LFS I ++ ++Y S++EIY E++ DLL+ + + NL +
Sbjct: 113 KDQQGIIPQLCEDLFSRIN----DTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV 168
Query: 254 KDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESW 313
++ P G YVE+L++ VTSY DI ++ G +R V AT++N SSRSH VF I+ +
Sbjct: 169 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFN-IIFTQ 227
Query: 314 CXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKS--VKEGKYVKKSLAQLGYLVKAL 371
+I LVD+AG++R D G K +KEG + KSL LG ++ AL
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSER--ADSTGAKGTRLKEGANINKSLTTLGKVISAL 285
Query: 372 TQETLG--------KSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTI 423
+ G K++ + YR S LT LLRE+LGGN++ +V +SP + + E LST+
Sbjct: 286 AEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTL 345
Query: 424 RFGQRVKSIRNDPVIN 439
R+ R K IRN +N
Sbjct: 346 RYADRAKQIRNTVSVN 361
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/372 (35%), Positives = 207/372 (55%), Gaps = 43/372 (11%)
Query: 96 SVKVVVRIRPAN--DLERDSNQTVKKVSSDSLAVGERK-------FAFDSVLDSNSNQED 146
SVKV VR+RP N ++ RDS ++ S + V ++ F+FD S+++ ED
Sbjct: 21 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPED 80
Query: 147 I--------FQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKE 198
I ++ +G ++++A GYNV + +YGQTG+GK+YTM G + ++
Sbjct: 81 INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK--------QEKDQQ 132
Query: 199 GIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD-QTQRNLEIKDDP 257
GI+P++ + LFS I ++ ++Y S++EIY E++ DLL+ + + NL +++ P
Sbjct: 133 GIIPQLCEDLFSRIN----DTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHP 188
Query: 258 KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXX 317
G YVE+L++ VTSY DI ++ G +R V AT++N SSRSH VF I+ +
Sbjct: 189 LLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFN-IIFTQKRHD 247
Query: 318 XXXXXXXXXXXRICLVDIAGADRNKLDDVGRKS--VKEGKYVKKSLAQLGYLVKALTQET 375
+I LVD+AG++R D G K +KEG + KSL LG ++ AL +
Sbjct: 248 AETNITTEKVSKISLVDLAGSER--ADSTGAKGTRLKEGANINKSLTTLGKVISALAEMD 305
Query: 376 LG--------KSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQ 427
G K++ + YR S LT LLRE+LGGN++ +V +SP + + E LST+R+
Sbjct: 306 SGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYAD 365
Query: 428 RVKSIRNDPVIN 439
R K IRN +N
Sbjct: 366 RAKQIRNTVSVN 377
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 208/377 (55%), Gaps = 43/377 (11%)
Query: 92 VSDPSVKVVVRIRPAN--DLERDSNQTVKKVSSDSLAVGERK-------FAFDSVLDSNS 142
++ SVKV VR+RP N ++ RDS ++ S + V ++ F+FD S++
Sbjct: 1 MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHT 60
Query: 143 NQEDI--------FQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSP 194
+ EDI ++ +G ++++A GYNV + +YGQTG+GK+YTM G
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK--------QE 112
Query: 195 RSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD-QTQRNLEI 253
+ ++GI+P++ + LFS I ++ ++Y S++EIY E++ DLL+ + + NL +
Sbjct: 113 KDQQGIIPQLCEDLFSRIN----DTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV 168
Query: 254 KDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESW 313
++ P G YVE+L++ VTSY DI ++ G R V AT++N SSRSH VF I+ +
Sbjct: 169 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFN-IIFTQ 227
Query: 314 CXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKS--VKEGKYVKKSLAQLGYLVKAL 371
+I LVD+AG++R D G K +KEG + KSL LG ++ AL
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSER--ADSTGAKGTRLKEGANINKSLTTLGKVISAL 285
Query: 372 TQETLG--------KSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTI 423
+ G K++ + YR S LT LLRE+LGGN++ +V +SP + + E LST+
Sbjct: 286 AEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTL 345
Query: 424 RFGQRVKSIRNDPVINE 440
R+ R K IRN +N
Sbjct: 346 RYADRAKQIRNTVSVNH 362
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 192/360 (53%), Gaps = 27/360 (7%)
Query: 94 DPSVKVVVRIRPANDLERDSNQTVKKV-SSDSLAV----GERKFAFDSVLDSNSNQEDIF 148
+ +V V VR+RP N E +T + +D+ + G + F FD V N ++++
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVY 62
Query: 149 QVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKL 208
+ + P++ +A+ GYN ++ +YGQT SGKTYTM G + G++PR +
Sbjct: 63 EEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHL----------GVIPRAIHDI 112
Query: 209 FSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRN--LEIKDDPKHGFYVENL 266
F +I++ + + R S++EIYNE I DLL TQ+ L I++D YV +L
Sbjct: 113 FQKIKKFPDRE------FLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADL 166
Query: 267 TEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXX 326
TEE V + E + + KG SR G T +N +SSRSH +F I+ES
Sbjct: 167 TEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVK 226
Query: 327 XXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRC 386
+ LVD+AG++R +KEG + +SL LG ++K L+ +G + YR
Sbjct: 227 VSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGF--INYRD 284
Query: 387 SCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISEDDV 446
S LT +L+ SLGGNAK ++C I+P + D E L+ ++F K ++N P +NE+S D++
Sbjct: 285 SKLTRILQNSLGGNAKTRIICTITPVSFD--ETLTALQFASTAKYMKNTPYVNEVSTDEL 342
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 200/361 (55%), Gaps = 42/361 (11%)
Query: 97 VKVVVRIRPANDLERD----------SNQTVKKVSSDSLAVGERK-----FAFD------ 135
VKV VRIRP N E D +N+ + + +L+ G+ + FA+D
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 136 --SVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPS 193
SV + + Q+ +F+ +G +++NA GYN + +YGQTGSGK+YTM G
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA-------- 114
Query: 194 PRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD--QTQRNL 251
+ G++PR+ LF Q+E+ ++ +++ S++EIYNE++ DLLD +++ L
Sbjct: 115 --DQPGLIPRLCSGLFERTQKEEN----EEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTL 168
Query: 252 EIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVE 311
++++ G YV+ L++ VTSY+DI ++ +G SR V AT++N +SSRSH VF I
Sbjct: 169 KVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFK-ITL 227
Query: 312 SWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKAL 371
+ ++ LVD+AG++R +KEG + KSL LG ++ AL
Sbjct: 228 THTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISAL 287
Query: 372 TQETLGKSED--VIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRV 429
++ GK+++ V YR S LT LL++SLGGN+K +V +SP + E LST+R+ R
Sbjct: 288 ADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRA 347
Query: 430 K 430
K
Sbjct: 348 K 348
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 196/358 (54%), Gaps = 27/358 (7%)
Query: 88 EVPEVSDPSVKVVVRIRPANDLER--DSNQTVK---KVSSDSLAVGERKFAFDSVLDSNS 142
E+P ++ S+KVV R RP ND E S VK V + +++ + + FD V N+
Sbjct: 6 EIP--AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNA 63
Query: 143 NQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVP 202
+QE ++ +V + LAGYN ++ +YGQT SGKT+TM G V K+GI+P
Sbjct: 64 SQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSV-------KQGIIP 116
Query: 203 RIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPKHGFY 262
RI +F+ I + N + + + S+ EIY ++I DLLD ++ NL + +D Y
Sbjct: 117 RIVNDIFNHIYAMEVN-----LEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPY 171
Query: 263 VENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXX 322
V+ TE +V+S ED+ +++ +G S+R + T++N SSRSH VF V+
Sbjct: 172 VKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQ-----ENLEN 226
Query: 323 XXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDV 382
++ LVD+AG+++ + E K + KSL+ LG ++ AL G +
Sbjct: 227 QKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALAD---GNKTHI 283
Query: 383 IYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINE 440
YR S LT +L+ESLGGNA+ T+V SP + + E ST+ FG+R K+++N +NE
Sbjct: 284 PYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNE 341
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/353 (33%), Positives = 193/353 (54%), Gaps = 23/353 (6%)
Query: 89 VPEVSDPSVKVVVRIRPANDLE--RDSNQTVKKVSSDSLAVGERKFAFDSVLDSNSNQED 146
+ ++++ ++KV+ R RP N+ E R K D++ + + +AFD V S+++QE
Sbjct: 1 MADLAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQ 60
Query: 147 IFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQ 206
++ +VK+ L GYN ++ +YGQT SGKT+TM G + DP GI+PRI Q
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK----LHDPEGM---GIIPRIVQ 113
Query: 207 KLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPKHGFYVENL 266
+F+ I EN + + + S+ EIY ++I DLLD ++ NL + +D YV+
Sbjct: 114 DIFNYIYSMDEN-----LEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGC 168
Query: 267 TEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXX 326
TE +V S +++ + +G S+R V T++N SSRSH +F V+
Sbjct: 169 TERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK-----QENTQTEQKL 223
Query: 327 XXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRC 386
++ LVD+AG+++ + E K + KSL+ LG ++ AL + S V YR
Sbjct: 224 SGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRD 279
Query: 387 SCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVIN 439
S +T +L++SLGGN + T+V SP + + E ST+ FGQR K+I+N +N
Sbjct: 280 SKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 189 bits (481), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 192/370 (51%), Gaps = 40/370 (10%)
Query: 92 VSDPSVKVVVRIRPANDLE-RDSNQTVKKVSSDSLAV----------------GERKFAF 134
+S ++KV+VR RP N E R++ + ++ S V R F F
Sbjct: 1 MSSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTF 60
Query: 135 DSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSP 194
D+V D S IFQ PL+ L G+N ++ +YGQTG+GKT+TM G E+P
Sbjct: 61 DAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK----EEP-- 114
Query: 195 RSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIK 254
G +P F+ LF I NS N+ S+LE+YNE+I DL+ + L +K
Sbjct: 115 ----GAIPNSFKHLFDAI-----NSSSSNQNFLVIGSYLELYNEEIRDLIKNNTK-LPLK 164
Query: 255 DDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWC 314
+D G YV+ L+ VT+ +++ ++ KG ++R V AT +N SSRSH +F +E C
Sbjct: 165 EDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIE--C 222
Query: 315 XXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQE 374
++ LVD+AG++R +++ EG + SL+ LG ++ L +
Sbjct: 223 SEVIENKEVIRVG-KLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVE- 280
Query: 375 TLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRN 434
+ + YR S LT LL++SLGGN+K + NISP + + E +ST+R+ R K I+N
Sbjct: 281 ---GATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKN 337
Query: 435 DPVINEISED 444
P INE +D
Sbjct: 338 KPRINEDPKD 347
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 189 bits (480), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 119/353 (33%), Positives = 191/353 (54%), Gaps = 26/353 (7%)
Query: 92 VSDPS---VKVVVRIRPANDLE--RDSNQTVKKVSSDSLAVGERKFAFDSVLDSNSNQED 146
++DP+ +KV+ R RP N+ E R K D++ + + +AFD V S+++QE
Sbjct: 1 MADPAECNIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKPYAFDRVFQSSTSQEQ 60
Query: 147 IFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQ 206
++ +VK+ L GYN ++ +YGQT SGK +TM G + DP GI+PRI Q
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGK----LHDPEGM---GIIPRIVQ 113
Query: 207 KLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPKHGFYVENL 266
+F+ I EN + + + S+ EIY ++I DLLD ++ NL + +D YV+
Sbjct: 114 DIFNYIYSMDEN-----LEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGC 168
Query: 267 TEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXX 326
TE +V S +++ + +G S+R V T++N SSRSH +F V+
Sbjct: 169 TERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK-----QENTQTEQKL 223
Query: 327 XXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRC 386
++ LVD+AG+++ + E K + KSL+ LG ++ AL + S V YR
Sbjct: 224 SGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRD 279
Query: 387 SCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVIN 439
S +T +L++SLGGN + T+V SP + + E ST+ FGQR K+I+N +N
Sbjct: 280 SKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 200/388 (51%), Gaps = 55/388 (14%)
Query: 96 SVKVVVRIRP------ANDLERDSNQTVK----KVSSDSLAVGE--RKFAFDSVLDSNSN 143
++KVV R RP A E+ VK + + A GE + F FD+V D++S
Sbjct: 22 ALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSK 81
Query: 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPR 203
Q D++ PL+ + L G+N ++ +YGQTG+GKTYTM G VE P R G++P
Sbjct: 82 QADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQG---TWVE-PELR---GVIPN 134
Query: 204 IFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD-QTQRNLEIKDDPKHGFY 262
F+ +F+ I R Q Y R S+LEIY E+I DLL + + LE+K++P+ G Y
Sbjct: 135 AFEHIFTHISRSQNQ------QYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVY 188
Query: 263 VENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXX 322
+++L+ + ++I ++ G +R VG+T +N SSRSH +F VE C
Sbjct: 189 IKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVE--CSERGSDGQ 246
Query: 323 XXXXXXRICLVDIAGADR-NKL--DDVGRKSV---------------------KEGKYVK 358
++ LVD+AG++R NK + G + KE +
Sbjct: 247 DHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKIN 306
Query: 359 KSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGE 418
SL+ LG ++ AL +S + YR S LT LL++SLGGNAK +V + P + E
Sbjct: 307 LSLSALGNVIAALAGN---RSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDE 363
Query: 419 ILSTIRFGQRVKSIRNDPVINEISEDDV 446
LST+RF R K+I+N P +NE +D +
Sbjct: 364 SLSTLRFANRAKNIKNKPRVNEDPKDTL 391
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 186 bits (471), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 189/346 (54%), Gaps = 23/346 (6%)
Query: 89 VPEVSDPSVKVVVRIRPANDLE--RDSNQTVKKVSSDSLAVGERKFAFDSVLDSNSNQED 146
+ ++++ ++KV+ R RP N+ E R K D++ + + +AFD V S+++QE
Sbjct: 1 MADLAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQ 60
Query: 147 IFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQ 206
++ +VK+ L GYN ++ +YGQT SGKT+TM G + DP GI+PRI Q
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK----LHDPEGM---GIIPRIVQ 113
Query: 207 KLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPKHGFYVENL 266
+F+ I EN + + + S+ EIY ++I DLLD ++ NL + +D YV+
Sbjct: 114 DIFNYIYSMDEN-----LEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGC 168
Query: 267 TEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXX 326
TE +V S +++ + +G S+R V T++N SSRSH +F V+
Sbjct: 169 TERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK-----QENTQTEQKL 223
Query: 327 XXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRC 386
++ LVD+AG+++ + E K + KSL+ LG ++ AL + S V YR
Sbjct: 224 SGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRD 279
Query: 387 SCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSI 432
S +T +L++SLGGN + T+V SP + + E ST+ FGQR K+I
Sbjct: 280 SKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 194/364 (53%), Gaps = 31/364 (8%)
Query: 93 SDPSVKVVVRIRPANDLER-----------DSNQTVKKVSSDSLAVGERKFAFDSVLDSN 141
S+ +++V VR+RP N ER + V + + DS +KF FD
Sbjct: 21 SNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLT--KKFTFDRSFGPE 78
Query: 142 SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDP-SPRSKEGI 200
S Q D++ VV PL++ L GYN ++ +YGQTG+GKT+TM G +A ++ S GI
Sbjct: 79 SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGI 138
Query: 201 VPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL--DQTQRNLEIKDDPK 258
+PR LF E++ ++ Y R S+LE+YNE++ DLL D T + D K
Sbjct: 139 IPRALSHLFDELRM-------MEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTK 191
Query: 259 HG-FYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXX 317
G ++ L E V S +D+ ++L KG RK T +N++SSRSH VF+ +V
Sbjct: 192 KGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVH--IREN 249
Query: 318 XXXXXXXXXXXRICLVDIAGADR-NKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETL 376
++ LVD+AG++ +K + V+E + +SL LG ++ AL
Sbjct: 250 GIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD--- 306
Query: 377 GKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDP 436
++ V YR S LT LL+ESLGG K +++ ISP +KD+ E LST+ + R K+I+N P
Sbjct: 307 -RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKP 365
Query: 437 VINE 440
+N+
Sbjct: 366 EVNQ 369
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 175/343 (51%), Gaps = 45/343 (13%)
Query: 129 ERKFAFDSVLDSN-------SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181
E+ F FD S+ + QE ++ +G + + GY+ + +YGQTGSGK+YTM
Sbjct: 95 EKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154
Query: 182 WGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIG 241
G P + G++PR + LF I Q+ + I+Y + S+ E+YNE +
Sbjct: 155 MGTPD----------QPGLIPRTCEDLFQRIASAQDET--PNISYNVKVSYFEVYNEHVR 202
Query: 242 DLLDQTQRN-----LEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVN 296
DLL N L++++ P G YV++LTE V E+I + + G SR V +T +N
Sbjct: 203 DLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMN 262
Query: 297 SKSSRSHIVFTFIVESWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKY 356
SSRSH VFT +++ RI LVD+AG++R K + + ++EG
Sbjct: 263 DTSSRSHAVFTIMLKQ-IHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSN 321
Query: 357 VKKSLAQLGYLVKALTQ-----------------ETLGKSEDVI-YRCSCLTHLLRESLG 398
+ KSL LG ++ AL T G + V+ YR S LT LL++SLG
Sbjct: 322 INKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLG 381
Query: 399 GNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEI 441
GN+K ++ ISP + D E LST+R+ + K IR V+N++
Sbjct: 382 GNSKTAMIACISPTDYD--ETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 179 bits (453), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 201/373 (53%), Gaps = 51/373 (13%)
Query: 96 SVKVVVRIRPANDLER--------DSNQTVKKVSSDSLAVGERK----FAFDSVLDSNSN 143
+++VVVR+RP N ER +S+ K+VS + + ++ + FD V +++
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPS-----AMVEDPSPRSKE 198
Q D+++ V P++ + GYN ++ +YGQTG+GKT+TM G S EDP
Sbjct: 78 QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLA---- 133
Query: 199 GIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL----DQTQRNLEIK 254
GI+PR ++F E+ +G + + + S LEIYNE++ DLL D ++R L++
Sbjct: 134 GIIPRTLHQIF-----EKLTDNGTE--FSVKVSLLEIYNEELFDLLNPSSDVSER-LQMF 185
Query: 255 DDP--KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVES 312
DDP K G ++ L E V + +++ QIL KG + R AT +N+ SSRSH VF+ +
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH- 244
Query: 313 WCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGR-----KSVKEGKYVKKSLAQLGYL 367
++ LVD+AG+ +++GR K +E + +SL LG +
Sbjct: 245 -MKETTIDGEELVKIGKLNLVDLAGS-----ENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 368 VKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQ 427
+ AL + T V YR S LT +L++SLGG + +++ ISP + ++ E LST+ +
Sbjct: 299 ITALVERT----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAH 354
Query: 428 RVKSIRNDPVINE 440
R K+I N P +N+
Sbjct: 355 RAKNILNKPEVNQ 367
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 190/350 (54%), Gaps = 35/350 (10%)
Query: 97 VKVVVRIRPANDLERDSNQTVKKVSSDSLAV-------GERKFAFDSVLDSNSNQEDIFQ 149
++V RIRP N+ E + + D V ++ +D V D ++Q+DIF+
Sbjct: 15 IRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQDDIFE 74
Query: 150 VVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLF 209
LV++A+ GYNV + +YGQTGSGKT+T++G S +P G+ PR ++LF
Sbjct: 75 DTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGHES----NP------GLTPRATKELF 123
Query: 210 SEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL---DQTQRNLEIKDDPKHGFYVENL 266
+ ++R D K+ ++ + +E+Y + + DLL + LEIK D K +VEN+
Sbjct: 124 NILKR-----DSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENV 178
Query: 267 TEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXX 326
T +++ E++ IL +G R V T++N +SSRSH++ + ++ES
Sbjct: 179 TTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIES-----IDLQTQSAA 233
Query: 327 XXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRC 386
++ VD+AG++R K +KE + + KSL+ LG ++ AL+ ++ + YR
Sbjct: 234 RGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSS----GNQHIPYRN 289
Query: 387 SCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDP 436
LT L+ +SLGGNAK + N+SP ++ E +++ + RV++I NDP
Sbjct: 290 HKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDP 339
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 176 bits (446), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 205/380 (53%), Gaps = 36/380 (9%)
Query: 97 VKVVVRIRPANDLE-----RDSNQTVKKVSSDSLAVGER--KFAFDSVLDSNSNQEDIFQ 149
++V R+RP + E R++ ++V + + + L ++ + +D V D N+ Q+D+F+
Sbjct: 7 IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE 66
Query: 150 VVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLF 209
LV++A+ GYNV + +YGQTGSGKT+T++G D +P G+ PR +LF
Sbjct: 67 DTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGA------DSNP----GLTPRAMSELF 115
Query: 210 SEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL--DQTQR-NLEIKDDPKHGFYVENL 266
+++ D + ++ + +E+Y + + DLL Q +R L+IK D K VEN+
Sbjct: 116 RIMKK-----DSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENV 170
Query: 267 TEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXX 326
T +++YE++ I+ +G R T +N +SSRSH++ + I+ES
Sbjct: 171 TVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIES-----TNLQTQAIA 225
Query: 327 XXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRC 386
++ VD+AG++R K +KE + + KSL+ LG ++ AL+ ++ + YR
Sbjct: 226 RGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS----GNQHIPYRN 281
Query: 387 SCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISEDDV 446
LT L+ +SLGGNAK + NISP ++ E +++ + RV+SI NDP N +S +V
Sbjct: 282 HKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKN-VSSKEV 340
Query: 447 NDLSDQIRQLKEELIRAKSD 466
L + KE+ R D
Sbjct: 341 ARLKKLVSYWKEQAGRKGDD 360
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 200/373 (53%), Gaps = 51/373 (13%)
Query: 96 SVKVVVRIRPANDLERDSNQ-------TVKK---VSSDSLA--VGERKFAFDSVLDSNSN 143
+++VVVR RP N ER ++ V+K V + LA + + FD V +++
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPS-----AMVEDPSPRSKE 198
Q D+++ V P++ + GYN ++ +YGQTG+GKT+TM G S EDP +
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP----LD 133
Query: 199 GIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL----DQTQRNLEIK 254
GI+PR ++F E+ +G + + + S LEIYNE++ DLL D ++R L++
Sbjct: 134 GIIPRTLHQIF-----EKLTDNGTE--FSVKVSLLEIYNEELFDLLNPSSDVSER-LQMF 185
Query: 255 DDP--KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVES 312
DDP K G ++ L E V + +++ QIL KG + R AT +N+ SSRSH VF+ +
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH- 244
Query: 313 WCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGR-----KSVKEGKYVKKSLAQLGYL 367
++ LVD+AG+ +++GR K +E + +SL LG +
Sbjct: 245 -MKETTIDGEELVKIGKLNLVDLAGS-----ENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 368 VKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQ 427
+ AL + T V YR S LT +L++SLGG + +++ ISP + ++ E LST+ +
Sbjct: 299 ITALVERT----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAH 354
Query: 428 RVKSIRNDPVINE 440
R K+I N P +N+
Sbjct: 355 RAKNILNKPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 199/373 (53%), Gaps = 51/373 (13%)
Query: 96 SVKVVVRIRPANDLERDSNQ-------TVKK---VSSDSLA--VGERKFAFDSVLDSNSN 143
+++VVVR RP N ER ++ V+K V + LA + + FD V +++
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPS-----AMVEDPSPRSKE 198
Q D+++ V P++ + GYN ++ +YGQTG+GKT+TM G S EDP
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA---- 132
Query: 199 GIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL----DQTQRNLEIK 254
GI+PR ++F E+ +G + + + S LEIYNE++ DLL D ++R L++
Sbjct: 133 GIIPRTLHQIF-----EKLTDNGTE--FSVKVSLLEIYNEELFDLLNPSSDVSER-LQMF 184
Query: 255 DDP--KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVES 312
DDP K G ++ L E V + +++ QIL KG + R AT +N+ SSRSH VF+ +
Sbjct: 185 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH- 243
Query: 313 WCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGR-----KSVKEGKYVKKSLAQLGYL 367
++ LVD+AG+ +++GR K +E + +SL LG +
Sbjct: 244 -MKETTIDGEELVKIGKLNLVDLAGS-----ENIGRSGAVDKRAREAGNINQSLLTLGRV 297
Query: 368 VKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQ 427
+ AL + T V YR S LT +L++SLGG + +++ ISP + ++ E LST+ +
Sbjct: 298 ITALVERT----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAH 353
Query: 428 RVKSIRNDPVINE 440
R K+I N P +N+
Sbjct: 354 RAKNILNKPEVNQ 366
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 199/373 (53%), Gaps = 51/373 (13%)
Query: 96 SVKVVVRIRPANDLERDSNQ-------TVKK---VSSDSLA--VGERKFAFDSVLDSNSN 143
+++VVVR RP N ER ++ V+K V + LA + + FD V +++
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPS-----AMVEDPSPRSKE 198
Q D+++ V P++ + GYN ++ +YGQTG+GKT+TM G S EDP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA---- 133
Query: 199 GIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL----DQTQRNLEIK 254
GI+PR ++F E+ +G + + + S LEIYNE++ DLL D ++R L++
Sbjct: 134 GIIPRTLHQIF-----EKLTDNGTE--FSVKVSLLEIYNEELFDLLNPSSDVSER-LQMF 185
Query: 255 DDP--KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVES 312
DDP K G ++ L E V + +++ QIL KG + R AT +N+ SSRSH VF+ +
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH- 244
Query: 313 WCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGR-----KSVKEGKYVKKSLAQLGYL 367
++ LVD+AG+ +++GR K +E + +SL LG +
Sbjct: 245 -MKETTIDGEELVKIGKLNLVDLAGS-----ENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 368 VKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQ 427
+ AL + T V YR S LT +L++SLGG + +++ ISP + ++ E LST+ +
Sbjct: 299 ITALVERT----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAH 354
Query: 428 RVKSIRNDPVINE 440
R K+I N P +N+
Sbjct: 355 RAKNILNKPEVNQ 367
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 199/373 (53%), Gaps = 51/373 (13%)
Query: 96 SVKVVVRIRPANDLERDSNQ-------TVKK---VSSDSLA--VGERKFAFDSVLDSNSN 143
+++VVVR RP N ER ++ V+K V + LA + + FD V +++
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPS-----AMVEDPSPRSKE 198
Q D+++ V P++ + GYN ++ +YGQTG+GKT+TM G S EDP
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA---- 135
Query: 199 GIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL----DQTQRNLEIK 254
GI+PR ++F E+ +G + + + S LEIYNE++ DLL D ++R L++
Sbjct: 136 GIIPRTLHQIF-----EKLTDNGTE--FSVKVSLLEIYNEELFDLLNPSSDVSER-LQMF 187
Query: 255 DDP--KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVES 312
DDP K G ++ L E V + +++ QIL KG + R AT +N+ SSRSH VF+ +
Sbjct: 188 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH- 246
Query: 313 WCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGR-----KSVKEGKYVKKSLAQLGYL 367
++ LVD+AG+ +++GR K +E + +SL LG +
Sbjct: 247 -MKETTIDGEELVKIGKLNLVDLAGS-----ENIGRSGAVDKRAREAGNINQSLLTLGRV 300
Query: 368 VKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQ 427
+ AL + T V YR S LT +L++SLGG + +++ ISP + ++ E LST+ +
Sbjct: 301 ITALVERT----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAH 356
Query: 428 RVKSIRNDPVINE 440
R K+I N P +N+
Sbjct: 357 RAKNILNKPEVNQ 369
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 199/373 (53%), Gaps = 51/373 (13%)
Query: 96 SVKVVVRIRPANDLERDSNQ-------TVKK---VSSDSLA--VGERKFAFDSVLDSNSN 143
+++VVVR RP N ER ++ V+K V + LA + + FD V +++
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPS-----AMVEDPSPRSKE 198
Q D+++ V P++ + GYN ++ +YGQTG+GKT+TM G S EDP
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA---- 133
Query: 199 GIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL----DQTQRNLEIK 254
GI+PR ++F E+ +G + + + S LEIYNE++ DLL D ++R L++
Sbjct: 134 GIIPRTLHQIF-----EKLTDNGTE--FSVKVSLLEIYNEELFDLLNPSSDVSER-LQMF 185
Query: 255 DDP--KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVES 312
DDP K G ++ L E V + +++ QIL KG + R AT +N+ SSRSH VF+ +
Sbjct: 186 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH- 244
Query: 313 WCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGR-----KSVKEGKYVKKSLAQLGYL 367
++ LVD+AG+ +++GR K +E + +SL LG +
Sbjct: 245 -MKETTIDGEELVKIGKLNLVDLAGS-----ENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 368 VKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQ 427
+ AL + T V YR S LT +L++SLGG + +++ ISP + ++ E LST+ +
Sbjct: 299 ITALVERT----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAH 354
Query: 428 RVKSIRNDPVINE 440
R K+I N P +N+
Sbjct: 355 RAKNILNKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 199/373 (53%), Gaps = 51/373 (13%)
Query: 96 SVKVVVRIRPANDLERDSNQ-------TVKK---VSSDSLA--VGERKFAFDSVLDSNSN 143
+++VVVR RP N ER ++ V+K V + LA + + FD V +++
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPS-----AMVEDPSPRSKE 198
Q D+++ V P++ + GYN ++ +YGQTG+GKT+TM G S EDP
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA---- 124
Query: 199 GIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL----DQTQRNLEIK 254
GI+PR ++F E+ +G + + + S LEIYNE++ DLL D ++R L++
Sbjct: 125 GIIPRTLHQIF-----EKLTDNGTE--FSVKVSLLEIYNEELFDLLNPSSDVSER-LQMF 176
Query: 255 DDP--KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVES 312
DDP K G ++ L E V + +++ QIL KG + R AT +N+ SSRSH VF+ +
Sbjct: 177 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH- 235
Query: 313 WCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGR-----KSVKEGKYVKKSLAQLGYL 367
++ LVD+AG+ +++GR K +E + +SL LG +
Sbjct: 236 -MKETTIDGEELVKIGKLNLVDLAGS-----ENIGRSGAVDKRAREAGNINQSLLTLGRV 289
Query: 368 VKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQ 427
+ AL + T V YR S LT +L++SLGG + +++ ISP + ++ E LST+ +
Sbjct: 290 ITALVERT----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAH 345
Query: 428 RVKSIRNDPVINE 440
R K+I N P +N+
Sbjct: 346 RAKNILNKPEVNQ 358
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 121/371 (32%), Positives = 199/371 (53%), Gaps = 47/371 (12%)
Query: 96 SVKVVVRIRPANDLERDSNQ-------TVKK---VSSDSLA--VGERKFAFDSVLDSNSN 143
+++VVVR RP N ER ++ V+K V + LA + + FD V +++
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG---PPSAMVEDPSPRSKEGI 200
Q D+++ V P++ + GYN ++ +YGQTG+GKT+TM G P + P + GI
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLA--GI 135
Query: 201 VPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL----DQTQRNLEIKDD 256
+PR ++F E+ +G + + + S LEIYNE++ DLL D ++R L++ DD
Sbjct: 136 IPRTLHQIF-----EKLTDNGTE--FSVKVSLLEIYNEELFDLLNPSSDVSER-LQMFDD 187
Query: 257 P--KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWC 314
P K G ++ L E V + +++ QIL KG + R AT +N+ SSRSH VF+ +
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH--M 245
Query: 315 XXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGR-----KSVKEGKYVKKSLAQLGYLVK 369
++ LVD+AG+ +++GR K +E + +SL LG ++
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGS-----ENIGRSGAVDKRAREAGNINQSLLTLGRVIT 300
Query: 370 ALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRV 429
AL + T V YR S LT +L++SLGG + +++ ISP + ++ E LST+ + R
Sbjct: 301 ALVERT----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 356
Query: 430 KSIRNDPVINE 440
K+I N P +N+
Sbjct: 357 KNILNKPEVNQ 367
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 196/369 (53%), Gaps = 51/369 (13%)
Query: 96 SVKVVVRIRPANDLERDSNQ-------TVKK---VSSDSLA--VGERKFAFDSVLDSNSN 143
+++VVVR RP N ER ++ V+K V + LA + + FD V +++
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPS-----AMVEDPSPRSKE 198
Q D+++ V P++ + GYN ++ +YGQTG+GKT+TM G S EDP
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA---- 118
Query: 199 GIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL----DQTQRNLEIK 254
GI+PR ++F E+ +G + + + S LEIYNE++ DLL D ++R L++
Sbjct: 119 GIIPRTLHQIF-----EKLTDNGTE--FSVKVSLLEIYNEELFDLLNPSSDVSER-LQMF 170
Query: 255 DDP--KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVES 312
DDP K G ++ L E V + +++ QIL KG + R AT +N+ SSRSH VF+ +
Sbjct: 171 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH- 229
Query: 313 WCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGR-----KSVKEGKYVKKSLAQLGYL 367
++ LVD+AG+ +++GR K +E + +SL LG +
Sbjct: 230 -MKETTIDGEELVKIGKLNLVDLAGS-----ENIGRSGAVDKRAREAGNINQSLLTLGRV 283
Query: 368 VKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQ 427
+ AL + T V YR S LT +L++SLGG + +++ ISP + ++ E LST+ +
Sbjct: 284 ITALVERT----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAH 339
Query: 428 RVKSIRNDP 436
R K+I N P
Sbjct: 340 RAKNILNKP 348
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/354 (34%), Positives = 186/354 (52%), Gaps = 46/354 (12%)
Query: 96 SVKVVVRIRPANDLERDSNQ-----------TVKKVSSDSLA---VGERKFAFDSVLDSN 141
+++V RIRP LE + N+ TV+ S D+ A +G++ F+FD V
Sbjct: 57 NIRVFCRIRPP--LESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 114
Query: 142 SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIV 201
S+Q DIF++V PL+++AL GYN+ + +YGQTGSGKTYTM G P ++ G++
Sbjct: 115 SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV----------GVI 163
Query: 202 PRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIK--DDPKH 259
PR LF I R N + Y+ + +FLEIYNE + DLL Q+++EI+ + K+
Sbjct: 164 PRTVDLLFDSI-RGYRNLGWE---YEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 219
Query: 260 GFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXX 319
YV N+TEE V + ++ +R +T+ N +SSRSH V +
Sbjct: 220 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-----IGRH 274
Query: 320 XXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKS 379
I LVD+AG++ K + E K +K+SL++L ++ AL Q K
Sbjct: 275 AEKQEISVGSINLVDLAGSESPKTS----TRMTETKNIKRSLSELTNVILALLQ----KQ 326
Query: 380 EDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIR 433
+ + YR S LTHLL SLGGN+K + N+SP E + ++RF V S +
Sbjct: 327 DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 380
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 169 bits (428), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 125/368 (33%), Positives = 191/368 (51%), Gaps = 47/368 (12%)
Query: 82 RSDTQGEVPEVSDPSVKVVVRIRPANDLERDSNQ-----------TVKKVSSDSLA---V 127
R + V ++ D +++V RIRP LE + N+ TV+ S D+ A +
Sbjct: 47 RKELHNTVMDLRD-NIRVFCRIRPP--LESEENRMCCTWTYHDESTVELQSIDAQAKSKM 103
Query: 128 GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSA 187
G++ F+FD V S+Q DIF++V PL+++AL GYN+ + +YGQTGSGKTYTM G P +
Sbjct: 104 GQQIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 162
Query: 188 MVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQT 247
+ G++PR LF I R N + Y+ + +FLEIYNE + DLL
Sbjct: 163 V----------GVIPRTVDLLFDSI-RGYRNLGWE---YEIKATFLEIYNEVLYDLLSNE 208
Query: 248 QRNLEIK--DDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIV 305
Q+++EI+ + K+ YV N+TEE V + ++ +R +T+ N +SSRSH V
Sbjct: 209 QKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV 268
Query: 306 FTFIVESWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLG 365
+ I LVD+AG++ K + E K + +SL++L
Sbjct: 269 TKLEL-----IGRHAEKQEISVGSINLVDLAGSESPKTS----TRMTETKNINRSLSELT 319
Query: 366 YLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRF 425
++ AL Q K + + YR S LTHLL SLGGN+K + N+SP E + ++RF
Sbjct: 320 NVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRF 375
Query: 426 GQRVKSIR 433
V S +
Sbjct: 376 AASVNSCK 383
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 185/354 (52%), Gaps = 46/354 (12%)
Query: 96 SVKVVVRIRPANDLERDSNQ-----------TVKKVSSDSLA---VGERKFAFDSVLDSN 141
+++V RIRP LE + N+ TV+ S D+ A +G++ F+FD V
Sbjct: 68 NIRVFCRIRPP--LESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 125
Query: 142 SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIV 201
S+Q DIF++V PL+++AL GYN+ + +YGQTGSGKTYTM G P ++ G++
Sbjct: 126 SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV----------GVI 174
Query: 202 PRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIK--DDPKH 259
PR LF I R N + Y+ + +FLEIYNE + DLL Q+++EI+ + K+
Sbjct: 175 PRTVDLLFDSI-RGYRNLGWE---YEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 230
Query: 260 GFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXX 319
YV N+TEE V + ++ +R +T+ N +SSRSH V +
Sbjct: 231 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-----IGRH 285
Query: 320 XXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKS 379
I LVD+AG++ K + E K + +SL++L ++ AL Q K
Sbjct: 286 AEKQEISVGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ----KQ 337
Query: 380 EDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIR 433
+ + YR S LTHLL SLGGN+K + N+SP E + ++RF V S +
Sbjct: 338 DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 391
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 185/354 (52%), Gaps = 46/354 (12%)
Query: 96 SVKVVVRIRPANDLERDSNQ-----------TVKKVSSDSLA---VGERKFAFDSVLDSN 141
+++V RIRP LE + N+ TV+ S D+ A +G++ F+FD V
Sbjct: 54 NIRVFCRIRPP--LESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 111
Query: 142 SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIV 201
S+Q DIF++V PL+++AL GYN+ + +YGQTGSGKTYTM G P ++ G++
Sbjct: 112 SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV----------GVI 160
Query: 202 PRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIK--DDPKH 259
PR LF I R N + Y+ + +FLEIYNE + DLL Q+++EI+ + K+
Sbjct: 161 PRTVDLLFDSI-RGYRNLGWE---YEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 216
Query: 260 GFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXX 319
YV N+TEE V + ++ +R +T+ N +SSRSH V +
Sbjct: 217 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-----IGRH 271
Query: 320 XXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKS 379
I LVD+AG++ K + E K + +SL++L ++ AL Q K
Sbjct: 272 AEKQEISVGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ----KQ 323
Query: 380 EDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIR 433
+ + YR S LTHLL SLGGN+K + N+SP E + ++RF V S +
Sbjct: 324 DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 377
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 185/354 (52%), Gaps = 46/354 (12%)
Query: 96 SVKVVVRIRPANDLERDSNQ-----------TVKKVSSDSLA---VGERKFAFDSVLDSN 141
+++V RIRP LE + N+ TV+ S D+ A +G++ F+FD V
Sbjct: 57 NIRVFCRIRPP--LESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 114
Query: 142 SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIV 201
S+Q DIF++V PL+++AL GYN+ + +YGQ+GSGKTYTM G P ++ G++
Sbjct: 115 SSQSDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESV----------GVI 163
Query: 202 PRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIK--DDPKH 259
PR LF I R N + Y+ + +FLEIYNE + DLL Q+++EI+ + K+
Sbjct: 164 PRTVDLLFDSI-RGYRNLGWE---YEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 219
Query: 260 GFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXX 319
YV N+TEE V + ++ +R +T+ N +SSRSH V +
Sbjct: 220 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-----IGRH 274
Query: 320 XXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKS 379
I LVD+AG++ K + E K + +SL++L ++ AL Q K
Sbjct: 275 AEKQEISVGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ----KQ 326
Query: 380 EDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIR 433
+ + YR S LTHLL SLGGN+K + N+SP E + ++RF V S +
Sbjct: 327 DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 380
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/353 (32%), Positives = 181/353 (51%), Gaps = 29/353 (8%)
Query: 97 VKVVVRIRPANDLERDSNQ--TVKKVSSDSLAVGER-------KFAFDSVLDSNSNQEDI 147
V+V VR+RP D ++ V+ + S SL + K+ FD+ S Q+DI
Sbjct: 23 VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDI 82
Query: 148 FQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQK 207
+ P++++ L G N S+L+YG TG+GKT+TM G P E P G++PR
Sbjct: 83 YAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSP----EQP------GVIPRALMD 132
Query: 208 LFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPKHGFYVENLT 267
L ++ RE E ++G+ S+LEIY E++ DLLD +L I++D + + L+
Sbjct: 133 LL-QLTRE-EGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLS 190
Query: 268 EEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXXX 327
++ ++S+ D + + +R VGAT +N +SSRSH V V+
Sbjct: 191 QKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQ----RERLAPFRQRE 246
Query: 328 XRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCS 387
++ L+D+AG++ N+ +KE + SL LG +V AL Q V YR S
Sbjct: 247 GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL----PRVPYRDS 302
Query: 388 CLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINE 440
LT LL++SLGG+A ++ NI+P+ + + +S + F R K + N P NE
Sbjct: 303 KLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNE 355
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 181/353 (51%), Gaps = 39/353 (11%)
Query: 93 SDPSVKVVVRIRPANDLERDSNQTVKKVSSDS--------LAVGE-RKFAFDSVLDSNSN 143
S +++V+ R+RP + + + V+ D+ L G+ F D V ++
Sbjct: 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQAS 61
Query: 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPR 203
Q+D+FQ V LV + + G+NV + +YGQTG+GKTYTM G E+P GI R
Sbjct: 62 QQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG----TAENP------GINQR 110
Query: 204 IFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD-QTQRNLEIK--DDPKHG 260
Q LFSE+Q + + + Y S EIYNE + DLL + Q LEI+ D
Sbjct: 111 ALQLLFSEVQEKASDWE-----YTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQ 165
Query: 261 FYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESW-CXXXXX 319
YV LTE V S +DI ++ G ++R T++N SSRSH + V C
Sbjct: 166 LYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLR 225
Query: 320 XXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKS 379
++ LVD+AG++R ++E +++ KSL+ LG ++ AL +
Sbjct: 226 TTG------KLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS----RQ 275
Query: 380 EDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSI 432
V +R S LT+LL++SL G++K +V +SP K+ E L +++F +RV+S+
Sbjct: 276 GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 174/345 (50%), Gaps = 40/345 (11%)
Query: 101 VRIRPANDLERDSNQTVKKVSSDSLAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNAL 160
++++P +D D T+ + +S + F FD + D ++IF+ VG L++++L
Sbjct: 50 IKVQPFDDDNGDQGMTINRGNSQVIP-----FKFDKIFDQQETNDEIFKEVG-QLIQSSL 103
Query: 161 AGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSD 220
GYNV + +YGQTGSGKTYTM P +GIVP +FS I +
Sbjct: 104 DGYNVCIFAYGQTGSGKTYTMLNP------------GDGIVPATINHIFSWIDKLA---- 147
Query: 221 GKQINYQCRCSFLEIYNEQIGDLL-------DQTQRNLEIKDDPKH-----GFYVENLTE 268
+ +Y+ C F+EIYNE I DLL + RN + K + +H Y+ N+T
Sbjct: 148 ARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITNITT 207
Query: 269 EYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXXXX 328
+ S + + ++L + R +T+ N SSRSH +F +E
Sbjct: 208 CVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEG-----KNEGTGEKSQG 262
Query: 329 RICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSC 388
+ LVD+AG++R V + ++E + + KSL+ LG ++ AL G+ + +R S
Sbjct: 263 ILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPD-GQKRHIPFRNSK 321
Query: 389 LTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIR 433
LT+LL+ SL G++K + NISP + E ++++RF +V + +
Sbjct: 322 LTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTK 366
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 149 bits (377), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 182/363 (50%), Gaps = 48/363 (13%)
Query: 96 SVKVVVRIRP--ANDLERDSNQTVKKVS----SDSLAVGERK-------FAFDSVLDSNS 142
+++V R+RP N+ + S+ ++K + + SL + + F FD + + +
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSH 65
Query: 143 NQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVP 202
++IF+ + LV+++L GYNV + +YGQTGSGKTYTM + +G++P
Sbjct: 66 TNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLN------------AGDGMIP 112
Query: 203 RIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD--QTQRNL-EIKDDPKH 259
+F +E + NY+ C ++EIYNE I DLL ++ N+ EI D KH
Sbjct: 113 MTLSHIFKWTANLKE----RGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKH 168
Query: 260 ---------GFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIV 310
G Y+ N+T +TS + IL K R AT N +SSRSH VF +
Sbjct: 169 DIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHI 228
Query: 311 ESWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKA 370
++ LVD+AG++R V + ++E + + KSL+ LG ++ A
Sbjct: 229 NG-----RNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYA 283
Query: 371 LTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVK 430
L GK + +R S LT+LL+ SL G++K + NI PD + E L+++RF +V
Sbjct: 284 LNTPDAGKRY-IPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVN 342
Query: 431 SIR 433
S +
Sbjct: 343 STK 345
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 182/381 (47%), Gaps = 48/381 (12%)
Query: 77 RKKTTRSDTQGEVPEVSDPSVKVVVRIRPA------------NDLERDSNQTVKKVSSDS 124
+++T R E+ E+ +++V +RIRPA N E D N V+ +
Sbjct: 42 KEETVRRTLHNELQELR-GNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTK 100
Query: 125 L--AVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182
+ +F FD + D D+F+ VG LV+++L GYNV++ +YGQTGSGKT+TM
Sbjct: 101 IQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTFTML 159
Query: 183 GPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGD 242
P +GI+P +F+ I + + K +Y+ F+EIYNE I D
Sbjct: 160 NPG------------DGIIPSTISHIFNWINKLKT----KGWDYKVNAEFIEIYNENIVD 203
Query: 243 LLDQTQRN---------LEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSS-RKVGA 292
LL N EI+ D + E++ +I++K + R +
Sbjct: 204 LLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTAS 263
Query: 293 TSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVK 352
T+ N SSRSH +F + + LVD+AG++R + V ++
Sbjct: 264 TASNEHSSRSHSIFIIHLSG-----SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR 318
Query: 353 EGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPD 412
E + + KSL+ LG ++ AL Q K + +R S LT+LL+ SL G++K + NISP
Sbjct: 319 ETQNINKSLSALGDVIHALGQPDSTKRH-IPFRNSKLTYLLQYSLTGDSKTLMFVNISPS 377
Query: 413 NKDVGEILSTIRFGQRVKSIR 433
+ + E L+++RF +V S R
Sbjct: 378 SSHINETLNSLRFASKVNSTR 398
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 164/307 (53%), Gaps = 27/307 (8%)
Query: 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVED 191
F D VL +++Q+ +++ V +V AL GYN +++ YGQTG+GKTYTM G E+
Sbjct: 74 FKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGA----TEN 128
Query: 192 PSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQ----- 246
R GI+PR Q++F I+ ++ R S+LEIYNE + DLL
Sbjct: 129 YKHR---GILPRALQQVFRMIEERPTHA------ITVRVSYLEIYNESLFDLLSTLPYVG 179
Query: 247 -TQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIV 305
+ + I ++P+ G +++ L+ + ED +L +G ++R + + ++N SSRSH +
Sbjct: 180 PSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCI 238
Query: 306 FTFIVESWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLG 365
FT +E+ +I LVD+AG++R + +KE Y+ KSL+ L
Sbjct: 239 FTIYLEA---HSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLE 295
Query: 366 YLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRF 425
+ AL + K + + +R LTH L++SLGGN + +V NI + + E LS++RF
Sbjct: 296 QAIIALGDQ---KRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRF 352
Query: 426 GQRVKSI 432
R+K +
Sbjct: 353 ASRMKLV 359
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 173/362 (47%), Gaps = 47/362 (12%)
Query: 96 SVKVVVRIRPA------------NDLERDSNQTVKKVSSDSL--AVGERKFAFDSVLDSN 141
+++V RIRPA N E D N V+ + + +F FD + D
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 63
Query: 142 SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIV 201
D+F+ VG LV+++L GYNV + +YGQTGSGKT+TM P +GI+
Sbjct: 64 DTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG------------DGII 110
Query: 202 PRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRN---------LE 252
P +F+ I + + K +Y+ C F+EIYNE I DLL N E
Sbjct: 111 PSTISHIFNWINKLKT----KGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHE 166
Query: 253 IKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSS-RKVGATSVNSKSSRSHIVFTFIVE 311
I+ D + E++ +I++K + R +T+ N SSRSH +F +
Sbjct: 167 IRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS 226
Query: 312 SWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKAL 371
+ LVD+AG++R + V ++E + +KKSL+ LG ++ AL
Sbjct: 227 G-----SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHAL 281
Query: 372 TQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKS 431
Q K + +R S LT+LL+ SL G++K + NISP + + E L+++RF +V S
Sbjct: 282 GQPDSTKRH-IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
Query: 432 IR 433
R
Sbjct: 341 TR 342
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 163/312 (52%), Gaps = 37/312 (11%)
Query: 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVED 191
F+FD V S Q+++F+ + + LV++AL GY V + +YGQTGSGKT+TM G P D
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG---D 140
Query: 192 PSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRN- 250
P EG++PR + LFS Q G+ Y S++EIYNE + DLL R
Sbjct: 141 PQ---LEGLIPRALRHLFSVAQ----ELSGQGWTYSFVASYVEIYNETVRDLLATGTRKG 193
Query: 251 ----LEIKDDPKHGFYVENLT---EEYV--TSYEDITQILIKGLSSRKVGATSVNSKSSR 301
EI+ + G E LT YV + +++ +L +R V T+ N +SSR
Sbjct: 194 QGGECEIR---RAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSR 250
Query: 302 SHIVFTFIVESWCXXXXXXXXXXXXXXRICLVDIAGADRN----KLDDVGRKSVKEGKYV 357
SH VF + + LVD+AG++R L R+ ++E + +
Sbjct: 251 SHSVFQLQISG-----EHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAI 305
Query: 358 KKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVG 417
SL+ LG ++ AL+ K V YR S LT+LL+ SLGG+AK+ + NISP ++V
Sbjct: 306 NSSLSTLGLVIMALSN----KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVS 361
Query: 418 EILSTIRFGQRV 429
E L+++RF +V
Sbjct: 362 ESLNSLRFASKV 373
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 146 bits (368), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 181/353 (51%), Gaps = 24/353 (6%)
Query: 89 VPEVSDPSVKVVVRIRPANDLER-DSNQTVKKV--SSDSLAVG-ERKFAFDSVLDSNSNQ 144
+P + V+V +R+RP E +Q+ +V + +G +R F F VL ++ Q
Sbjct: 5 LPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQ 64
Query: 145 EDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMW-GPPSAMVEDPSPRSKEGIVPR 203
E ++Q PL++ G+N ++ +YGQTGSGKTYTM ++++ED ++GIVPR
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLED-----EQGIVPR 119
Query: 204 IFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD--QTQRNLEIKDDPKHGF 261
+ F I EN ++ S+LE+Y E+ DLL+ R++++++D +
Sbjct: 120 AMAEAFKLI---DEND---LLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNV 173
Query: 262 YVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXX- 320
+ + E V +++ +L G ++R GAT +N SSRSH VFT +E
Sbjct: 174 VLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLP 233
Query: 321 --XXXXXXXXRICLVDIAGADRN-KLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLG 377
+ VD+AG++R K G + +KE + SL LG ++ AL
Sbjct: 234 RPAPGQLLVSKFHFVDLAGSERVLKTGSTGER-LKESIQINSSLLALGNVISALGDPQR- 291
Query: 378 KSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVK 430
+ + YR S +T +L++SLGGNAK ++ +SP + D E L+T+ + R +
Sbjct: 292 RGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 172/362 (47%), Gaps = 47/362 (12%)
Query: 96 SVKVVVRIRPA------------NDLERDSNQTVKKVSSDSL--AVGERKFAFDSVLDSN 141
+++V RIRPA N E D N V+ + + +F FD + D
Sbjct: 15 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 74
Query: 142 SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIV 201
D+F+ VG LV+++L GYNV + +YGQTGSGKT+TM P +GI+
Sbjct: 75 DTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG------------DGII 121
Query: 202 PRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRN---------LE 252
P +F+ I + + K +Y+ C F+EIYNE I DLL N E
Sbjct: 122 PSTISHIFNWINKLKT----KGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHE 177
Query: 253 IKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSS-RKVGATSVNSKSSRSHIVFTFIVE 311
I+ D + E++ +I++K + R +T+ N SSRSH +F +
Sbjct: 178 IRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS 237
Query: 312 SWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKAL 371
+ LVD+AG++R + V ++E + + KSL+ LG ++ AL
Sbjct: 238 G-----SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL 292
Query: 372 TQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKS 431
Q K + +R S LT+LL+ SL G++K + NISP + + E L+++RF +V S
Sbjct: 293 GQPDSTKRH-IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 351
Query: 432 IR 433
R
Sbjct: 352 TR 353
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 172/362 (47%), Gaps = 47/362 (12%)
Query: 96 SVKVVVRIRPA------------NDLERDSNQTVKKVSSDSL--AVGERKFAFDSVLDSN 141
+++V RIRPA N E D N V+ + + +F FD + D
Sbjct: 3 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 62
Query: 142 SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIV 201
D+F+ VG LV+++L GYNV + +YGQTGSGKT+TM P +GI+
Sbjct: 63 DTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG------------DGII 109
Query: 202 PRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRN---------LE 252
P +F+ I + + K +Y+ C F+EIYNE I DLL N E
Sbjct: 110 PSTISHIFNWINKLKT----KGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHE 165
Query: 253 IKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSS-RKVGATSVNSKSSRSHIVFTFIVE 311
I+ D + E++ +I++K + R +T+ N SSRSH +F +
Sbjct: 166 IRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS 225
Query: 312 SWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKAL 371
+ LVD+AG++R + V ++E + + KSL+ LG ++ AL
Sbjct: 226 G-----SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL 280
Query: 372 TQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKS 431
Q K + +R S LT+LL+ SL G++K + NISP + + E L+++RF +V S
Sbjct: 281 GQPDSTKRH-IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 339
Query: 432 IR 433
R
Sbjct: 340 TR 341
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 171/371 (46%), Gaps = 62/371 (16%)
Query: 97 VKVVVRIRPANDLER--------------------------------DSNQTVKKVSSDS 124
+KVVVR+RP N E+ +NQ V K +
Sbjct: 12 MKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKD 71
Query: 125 LAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGP 184
L KF FD+V D S Q ++F+ P++++ L GYN ++L+YG TG+GKT+TM G
Sbjct: 72 L-----KFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS 126
Query: 185 ---PSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIG 241
P M + K EI+ E+ S S+LE+YNEQI
Sbjct: 127 ADEPGVMY----------LTMLHLYKCMDEIKEEKICSTA--------VSYLEVYNEQIR 168
Query: 242 DLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSR 301
DLL + L +++D + G V LT S E+I +L G +R T +N+ SSR
Sbjct: 169 DLLVNSGP-LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSR 227
Query: 302 SHIVFTFIVESWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSL 361
SH VF + ++ L+D+AG++R EG + +SL
Sbjct: 228 SHAVFQIYLRQQ--DKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSL 285
Query: 362 AQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILS 421
LG ++ AL ++ K++ + YR S LT LL++SLGGN + ++ +SP + + +
Sbjct: 286 LALGNVINALA-DSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYN 344
Query: 422 TIRFGQRVKSI 432
T+++ R K I
Sbjct: 345 TLKYANRAKDI 355
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 171/362 (47%), Gaps = 47/362 (12%)
Query: 96 SVKVVVRIRPA------------NDLERDSNQTVKKVSSDSL--AVGERKFAFDSVLDSN 141
+++V RIRPA N E D N V+ + + +F FD + D
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 63
Query: 142 SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIV 201
D+F+ VG LV+++L GYNV + +YGQTGSGKT+TM P +GI+
Sbjct: 64 DTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG------------DGII 110
Query: 202 PRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRN---------LE 252
P +F+ I + + K +Y+ C F+EIYNE I DLL N E
Sbjct: 111 PSTISHIFNWINKLKT----KGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHE 166
Query: 253 IKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSS-RKVGATSVNSKSSRSHIVFTFIVE 311
I+ D + E++ +I++K + R +T+ N SSRSH +F +
Sbjct: 167 IRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS 226
Query: 312 SWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKAL 371
+ LVD+AG+ R + V ++E + + KSL+ LG ++ AL
Sbjct: 227 G-----SNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHAL 281
Query: 372 TQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKS 431
Q K + +R S LT+LL+ SL G++K + NISP + + E L+++RF +V S
Sbjct: 282 GQPDSTKRH-IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
Query: 432 IR 433
R
Sbjct: 341 TR 342
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 179/352 (50%), Gaps = 22/352 (6%)
Query: 89 VPEVSDPSVKVVVRIRPANDLER-DSNQTVKKV--SSDSLAVG-ERKFAFDSVLDSNSNQ 144
+P + V+V +R+RP E +Q+ +V + +G +R F F VL ++ Q
Sbjct: 5 LPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQ 64
Query: 145 EDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMW-GPPSAMVEDPSPRSKEGIVPR 203
E ++Q PL++ G+N ++ +YGQTGSGKTYTM ++++ED ++GIVPR
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLED-----EQGIVPR 119
Query: 204 IFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD--QTQRNLEIKDDPKHGF 261
+ F I EN ++ S+LE+Y E+ DLL+ R++++++D +
Sbjct: 120 AMAEAFKLI---DEND---LLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNV 173
Query: 262 YVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXX- 320
+ + E V +++ +L G ++R GAT +N SSRSH VFT ++
Sbjct: 174 VLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLP 233
Query: 321 --XXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGK 378
+ VD+AG++R + KE + SL LG ++ AL +
Sbjct: 234 RPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQR-R 292
Query: 379 SEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVK 430
++ YR S +T +L++SLGGNAK ++ +SP + D E L+T+ + R +
Sbjct: 293 GSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 171/362 (47%), Gaps = 47/362 (12%)
Query: 96 SVKVVVRIRPA------------NDLERDSNQTVKKVSSDSL--AVGERKFAFDSVLDSN 141
+++V RIRPA N E D N V+ + + +F FD + D
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 63
Query: 142 SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIV 201
D+F+ VG LV+++L GYNV + +YGQTGSGKT+TM P +GI+
Sbjct: 64 DTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG------------DGII 110
Query: 202 PRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRN---------LE 252
P +F+ I + + K +Y+ C F+EIYNE I DLL N E
Sbjct: 111 PSTISHIFNWINKLKT----KGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHE 166
Query: 253 IKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSS-RKVGATSVNSKSSRSHIVFTFIVE 311
I+ D + E++ +I++K + R +T+ N SS SH +F +
Sbjct: 167 IRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLS 226
Query: 312 SWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKAL 371
+ LVD+AG++R + V ++E + + KSL+ LG ++ AL
Sbjct: 227 G-----SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL 281
Query: 372 TQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKS 431
Q K + +R S LT+LL+ SL G++K + NISP + + E L+++RF +V S
Sbjct: 282 GQPDSTKRH-IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
Query: 432 IR 433
R
Sbjct: 341 TR 342
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 157/307 (51%), Gaps = 29/307 (9%)
Query: 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVE 190
+F FD + + + + +F+ + L++ +L G NV + +YGQTGSGKT+TM P +
Sbjct: 431 RFLFDKIFEREQSNDLVFEELS-QLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTN---- 485
Query: 191 DPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD---QT 247
G++P +K+F++I+ +E K +Y R F+EIYNE I DLL+
Sbjct: 486 --------GMIPLSLKKIFNDIEELKE----KGWSYTVRGKFIEIYNEAIVDLLNPKIDP 533
Query: 248 QRNLEIKDDPKHG-FYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVF 306
EIK D G V N++ + S E IL + R AT N SSRSH +F
Sbjct: 534 NTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIF 593
Query: 307 TFIVESWCXXXXXXXXXXXXXXRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGY 366
++ + + L+D+AG++R +KE + + KSL+ LG
Sbjct: 594 IIDLQGY-----NSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGD 648
Query: 367 LVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFG 426
++ +L L V YR S LT+LL+ SLGGN+K + NISP KD+ E ++++RF
Sbjct: 649 VIHSLN---LKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFA 705
Query: 427 QRVKSIR 433
+V + R
Sbjct: 706 TKVNNTR 712
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 137/254 (53%), Gaps = 23/254 (9%)
Query: 93 SDP---SVKVVVRIRPANDLE--RDSNQTVKKVSSDSLAVGERK-FAFDSVLDSNSNQED 146
+DP S+KV+ R RP N+ E R K +++ +G+ K + FD VL N+ QE
Sbjct: 1 ADPAECSIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNTTQEQ 60
Query: 147 IFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQ 206
++ +VK+ L GYN ++ +YGQT SGKT+TM G + DP GI+PRI
Sbjct: 61 VYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK----LHDPQLM---GIIPRIAH 113
Query: 207 KLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPKHGFYVENL 266
+F I EN + + + S+ EIY ++I DLLD ++ NL + +D YV+
Sbjct: 114 DIFDHIYSMDEN-----LEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGC 168
Query: 267 TEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXX 326
TE +V+S E++ ++ +G ++R V T++N SSRSH +F ++
Sbjct: 169 TERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQ-----ENVETEKKL 223
Query: 327 XXRICLVDIAGADR 340
++ LVD+AG+++
Sbjct: 224 SGKLYLVDLAGSEK 237
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 136 bits (342), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 155/315 (49%), Gaps = 38/315 (12%)
Query: 124 SLAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM-W 182
SL V + +F FD + +Q++++Q + LPLV L G+ + L+YGQTG+GK+Y+M
Sbjct: 55 SLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGM 114
Query: 183 GPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGD 242
PP ++ + GI+PR +F + QEN+ Q SF+EIYNE+ D
Sbjct: 115 TPPGEILPE-----HLGILPRALGDIFERVTARQENNKDA---IQVYASFIEIYNEKPFD 166
Query: 243 LLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRS 302
LL T P + T + S D+ IL G +R+V T++NS SSRS
Sbjct: 167 LLGSTPHM------PMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRS 220
Query: 303 HIVFTFIVESWCXXXXXXXXXXXXXXRICLVDIAGAD---RNKLDDVGRKSVKEGKYVKK 359
H + T V+S R+ +VD+AG++ R + V R +EG +
Sbjct: 221 HAIVTIHVKS-----------KTHHSRMNIVDLAGSEGVRRTGHEGVAR---QEGVNINL 266
Query: 360 SLAQLGYLVKALTQETLGKSEDVI-YRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGE 418
L + +V ++ VI YR S LT +L+ SL + LT + ISP D+ E
Sbjct: 267 GLLSINKVVM-----SMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSE 321
Query: 419 ILSTIRFGQRVKSIR 433
LST+RFG K +R
Sbjct: 322 TLSTLRFGTSAKKLR 336
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 154/313 (49%), Gaps = 38/313 (12%)
Query: 124 SLAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM-W 182
SL V + +F FD + +Q++++Q + LPLV L G+ + L+YGQTG+GK+Y+M
Sbjct: 55 SLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGM 114
Query: 183 GPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGD 242
PP ++ + GI+PR +F + QEN+ Q SF+EIYNE+ D
Sbjct: 115 TPPGEILPE-----HLGILPRALGDIFERVTARQENNKDA---IQVYASFIEIYNEKPFD 166
Query: 243 LLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRS 302
LL T P + T + S D+ IL G +R+V T++NS SSRS
Sbjct: 167 LLGSTPHM------PMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRS 220
Query: 303 HIVFTFIVESWCXXXXXXXXXXXXXXRICLVDIAGAD---RNKLDDVGRKSVKEGKYVKK 359
H + T V+S R+ +VD+AG++ R + V R +EG +
Sbjct: 221 HAIVTIHVKS-----------KTHHSRMNIVDLAGSEGVRRTGHEGVAR---QEGVNINL 266
Query: 360 SLAQLGYLVKALTQETLGKSEDVI-YRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGE 418
L + +V ++ VI YR S LT +L+ SL + LT + ISP D+ E
Sbjct: 267 GLLSINKVVM-----SMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSE 321
Query: 419 ILSTIRFGQRVKS 431
LST+RFG K+
Sbjct: 322 TLSTLRFGTSAKA 334
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 125 bits (315), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 105/362 (29%), Positives = 167/362 (46%), Gaps = 44/362 (12%)
Query: 92 VSDP----SVKVVVRIRPAN--DLERDSNQTVKKVSSDSLAVGERK-------------F 132
V+DP + V VR RP N +L + + S L V E K F
Sbjct: 64 VTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAF 123
Query: 133 AFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDP 192
FD D ++ E +++ PLV+ G + +YGQTGSGKT+TM G S ++
Sbjct: 124 CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNA 183
Query: 193 SPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLE 252
S +GI + +F + + Q + +N + +F EIYN ++ DLL++ + L
Sbjct: 184 S----KGIYAMASRDVF--LLKNQPRY--RNLNLEVYVTFFEIYNGKVFDLLNKKAK-LR 234
Query: 253 IKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVES 312
+ +D + V L E VT +D+ +++ G + R G T NS SSRSH F ++ +
Sbjct: 235 VLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRT 294
Query: 313 WCXXXXXXXXXXXXXXRICLVDIAGADRNK-LDDVGRKSVKEGKYVKKSLAQLGYLVKAL 371
+ LVD+AG +R R++ EG + KSL L ++AL
Sbjct: 295 ----------KGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 344
Query: 372 TQETLGKSEDVIYRCSCLTHLLRES-LGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVK 430
Q +R S LT +LR+S +G N++ ++ ISP L+T+R+ RVK
Sbjct: 345 GQN----KAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
Query: 431 SI 432
+
Sbjct: 401 EL 402
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/391 (28%), Positives = 176/391 (45%), Gaps = 48/391 (12%)
Query: 67 IPRSDTPPE----NRKKTTRSDTQGEVPEVSDP----SVKVVVRIRPAN--DLERDSNQT 116
+PR + P K R+ + ++DP + V VR RP N +L +
Sbjct: 15 VPRGSSFPNWEFARMIKEFRATLECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDV 74
Query: 117 VKKVSSDSLAVGERK-------------FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGY 163
+ S L V E K F FD D ++ E +++ PLV+ G
Sbjct: 75 ISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 134
Query: 164 NVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQ 223
+ +YGQTGSGKT+TM G S ++ S +GI + +F + + Q ++
Sbjct: 135 KATCFAYGQTGSGKTHTMGGDLSGKAQNAS----KGIYAMASRDVF--LLKNQPCY--RK 186
Query: 224 INYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIK 283
+ + +F EIYN ++ DLL++ + L + +D K V L E V S +D+ +++
Sbjct: 187 LGLEVYVTFFEIYNGKLFDLLNKKAK-LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDM 245
Query: 284 GLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXXXXXXXXXXXXRICLVDIAGADRNK- 342
G + R G T NS SSRSH F I+ + + LVD+AG +R
Sbjct: 246 GSACRTSGQTFANSNSSRSHACFQIILRA----------KGRMHGKFSLVDLAGNERGAD 295
Query: 343 LDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRES-LGGNA 401
R++ EG + KSL L ++AL Q +R S LT +LR+S +G N+
Sbjct: 296 TSSADRQTRMEGAEINKSLLALKECIRALGQN----KAHTPFRESKLTQVLRDSFIGENS 351
Query: 402 KLTVVCNISPDNKDVGEILSTIRFGQRVKSI 432
+ ++ ISP L+T+R+ RVK +
Sbjct: 352 RTCMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 147/303 (48%), Gaps = 25/303 (8%)
Query: 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVED 191
F FD D ++ E +++ PLV+ + +YGQTGSGKT+TM G S +D
Sbjct: 141 FRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQD 200
Query: 192 PSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNL 251
S +GI + +F +++ + K++ Q +F EIY+ ++ DLL++ + L
Sbjct: 201 CS----KGIYALAARDVFLMLKK----PNYKKLELQVYATFFEIYSGKVFDLLNRKTK-L 251
Query: 252 EIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVE 311
+ +D K V L E V ED+ +++ G S R G TS N+ SSRSH VF I+
Sbjct: 252 RVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILR 311
Query: 312 SWCXXXXXXXXXXXXXXRICLVDIAGADRNK-LDDVGRKSVKEGKYVKKSLAQLGYLVKA 370
+ L+D+AG +R R++ EG + KSL L ++A
Sbjct: 312 ----------RKGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRA 361
Query: 371 LTQETLGKSEDVIYRCSCLTHLLRES-LGGNAKLTVVCNISPDNKDVGEILSTIRFGQRV 429
L + +R S LT +LR+S +G N++ ++ ISP L+T+R+ RV
Sbjct: 362 LGRN----KPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRV 417
Query: 430 KSI 432
K +
Sbjct: 418 KEL 420
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 147/303 (48%), Gaps = 25/303 (8%)
Query: 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVED 191
F FD D ++ E +++ PLV+ G + +YGQTGSGKT+TM G S ++
Sbjct: 51 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN 110
Query: 192 PSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNL 251
S +GI + +F + + Q + +N + +F EIYN ++ DLL++ + L
Sbjct: 111 AS----KGIYAMASRDVF--LLKNQPRY--RNLNLEVYVTFFEIYNGKVFDLLNKKAK-L 161
Query: 252 EIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVE 311
+ +D + V L E VT +D+ +++ G + R G T NS SSRSH F ++
Sbjct: 162 RVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR 221
Query: 312 SWCXXXXXXXXXXXXXXRICLVDIAGADRNK-LDDVGRKSVKEGKYVKKSLAQLGYLVKA 370
+ + LVD+AG +R R++ EG + KSL L ++A
Sbjct: 222 T----------KGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRA 271
Query: 371 LTQETLGKSEDVIYRCSCLTHLLRES-LGGNAKLTVVCNISPDNKDVGEILSTIRFGQRV 429
L Q +R S LT +LR+S +G N++ ++ ISP L+T+R+ RV
Sbjct: 272 LGQN----KAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 327
Query: 430 KSI 432
K +
Sbjct: 328 KEL 330
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 171/358 (47%), Gaps = 46/358 (12%)
Query: 97 VKVVVRIRPANDLER---DSNQ-TVK----------KVSSDSLAVGER-KFAFDSVLDSN 141
+KVVVR RP ++LE+ DS+ TVK + D ER +F D V D
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 142 SNQEDIFQVVGLPLVKNALA-GYNVSLLSYGQTGSGKTYTMWGP-PSAMVEDPSPRSKEG 199
+ +++ PL+ + G S +YGQTGSGKTYTM G P + P G
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTP------G 115
Query: 200 IVPRIFQKLFSEIQ-REQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPK 258
I +F+ + +++N+ G I SF EIY ++ DLL Q ++ + ++ K
Sbjct: 116 IFQYAAGDIFTFLNIYDKDNTKGIFI------SFYEIYCGKLYDLL-QKRKMVAALENGK 168
Query: 259 HGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCXXXX 318
V++L V + E++ +I G+ RK+G S N +SSRSH + ++
Sbjct: 169 KEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDI----- 223
Query: 319 XXXXXXXXXXRICLVDIAGADRNKLDDV--GRKSVKEGKYVKKSLAQLGYLVKALTQETL 376
+I +D+AG++R D V +++ +G + +SL L ++A+ +
Sbjct: 224 ---NKNTSLGKIAFIDLAGSERGA-DTVSQNKQTQTDGANINRSLLALKECIRAMDSD-- 277
Query: 377 GKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRN 434
+ +R S LT +LR+ G +K ++ NISP + L+T+R+ RVK+ N
Sbjct: 278 --KNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGN 333
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 359 KSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGE 418
KSL+ LG ++ AL + G V YR S +T +L++SLGGN + T+V SP + E
Sbjct: 2 KSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAE 58
Query: 419 ILSTIRFGQRVKSIRNDPVIN 439
ST+ FGQR K+I+N +N
Sbjct: 59 TKSTLMFGQRAKTIKNTVSVN 79
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 354 GKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDN 413
K + KSL+ LG ++ AL + G V YR S +T +L++SL GN + T+V SP
Sbjct: 1 AKNINKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSV 57
Query: 414 KDVGEILSTIRFGQRVKSIRNDPVIN 439
+ E ST+ FGQR K+I+N +N
Sbjct: 58 FNEAETKSTLMFGQRAKTIKNTVSVN 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,519,106
Number of Sequences: 62578
Number of extensions: 974661
Number of successful extensions: 2621
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2303
Number of HSP's gapped (non-prelim): 66
length of query: 1119
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1010
effective length of database: 8,152,335
effective search space: 8233858350
effective search space used: 8233858350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)