Query 001229
Match_columns 1119
No_of_seqs 438 out of 2000
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 19:19:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03188 kinesin-12 family pro 100.0 1E-285 2E-290 2542.2 91.4 1076 22-1117 29-1297(1320)
2 PF06548 Kinesin-related: Kine 100.0 9E-164 2E-168 1358.5 35.5 403 676-1080 1-488 (488)
3 KOG4280 Kinesin-like protein [ 100.0 1.4E-90 3E-95 808.4 27.2 354 94-466 4-371 (574)
4 KOG0245 Kinesin-like protein [ 100.0 3.7E-90 8.1E-95 817.7 23.3 357 94-469 3-379 (1221)
5 KOG0243 Kinesin-like protein [ 100.0 7.6E-87 1.6E-91 803.9 37.4 360 89-463 43-423 (1041)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 8.5E-83 1.8E-87 726.8 28.9 330 93-442 5-341 (607)
7 cd01373 KISc_KLP2_like Kinesin 100.0 4.9E-80 1.1E-84 694.6 34.5 332 95-432 1-337 (337)
8 KOG0241 Kinesin-like protein [ 100.0 1.2E-80 2.7E-85 722.6 29.5 410 93-529 2-437 (1714)
9 KOG0242 Kinesin-like protein [ 100.0 2.8E-80 6.1E-85 744.0 27.9 349 94-466 5-367 (675)
10 cd01370 KISc_KIP3_like Kinesin 100.0 5.8E-78 1.3E-82 678.0 33.3 319 96-432 1-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 1.7E-76 3.6E-81 668.0 33.1 314 96-430 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 5.7E-76 1.2E-80 665.8 34.6 330 95-439 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 9.7E-75 2.1E-79 654.4 34.8 333 95-440 2-351 (352)
14 cd01367 KISc_KIF2_like Kinesin 100.0 3E-74 6.5E-79 644.0 31.5 306 95-430 1-322 (322)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.4E-73 2.9E-78 638.5 34.5 318 95-432 2-325 (325)
16 cd01376 KISc_KID_like Kinesin 100.0 8.9E-74 1.9E-78 639.2 32.1 307 96-430 1-319 (319)
17 cd01374 KISc_CENP_E Kinesin mo 100.0 1.7E-73 3.7E-78 637.0 33.5 316 96-432 1-321 (321)
18 cd01371 KISc_KIF3 Kinesin moto 100.0 1.6E-73 3.5E-78 640.6 33.5 319 96-432 2-333 (333)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 2.5E-73 5.4E-78 639.9 34.5 328 96-433 2-341 (341)
20 cd01375 KISc_KIF9_like Kinesin 100.0 2.4E-72 5.2E-77 631.5 33.2 315 96-430 1-334 (334)
21 cd01366 KISc_C_terminal Kinesi 100.0 7.5E-71 1.6E-75 617.1 34.3 318 94-435 1-329 (329)
22 smart00129 KISc Kinesin motor, 100.0 2.2E-69 4.7E-74 605.9 34.3 324 96-439 1-335 (335)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 4.1E-70 8.9E-75 654.4 24.6 323 93-439 312-647 (670)
24 cd00106 KISc Kinesin motor dom 100.0 1.6E-68 3.4E-73 596.6 34.1 316 96-430 1-328 (328)
25 PF00225 Kinesin: Kinesin moto 100.0 4.4E-69 9.6E-74 602.6 24.3 317 102-432 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 4.3E-67 9.3E-72 596.0 27.9 325 91-436 204-545 (676)
27 KOG0247 Kinesin-like protein [ 100.0 3.6E-64 7.7E-69 585.3 29.3 332 93-438 29-442 (809)
28 KOG0244 Kinesin-like protein [ 100.0 1.2E-65 2.6E-70 612.4 9.3 343 103-464 1-350 (913)
29 COG5059 KIP1 Kinesin-like prot 100.0 8.7E-61 1.9E-65 569.6 30.6 321 93-440 20-344 (568)
30 cd01363 Motor_domain Myosin an 100.0 4E-49 8.7E-54 409.5 17.2 179 147-411 8-186 (186)
31 PLN03188 kinesin-12 family pro 98.1 0.00016 3.4E-09 92.5 20.9 198 800-1063 1034-1252(1320)
32 COG5059 KIP1 Kinesin-like prot 97.8 2.8E-07 6.1E-12 112.0 -9.4 249 92-372 302-566 (568)
33 COG1196 Smc Chromosome segrega 95.3 10 0.00022 51.1 30.5 77 936-1018 772-851 (1163)
34 PF07888 CALCOCO1: Calcium bin 95.2 3 6.6E-05 51.3 23.1 75 892-966 162-236 (546)
35 PF07888 CALCOCO1: Calcium bin 95.0 3.3 7.1E-05 51.0 22.4 70 979-1061 306-378 (546)
36 PRK04863 mukB cell division pr 94.3 1.8 4E-05 59.0 20.1 147 918-1064 438-603 (1486)
37 KOG0161 Myosin class II heavy 94.1 3.6 7.8E-05 57.1 22.1 210 871-1113 1152-1368(1930)
38 PF12711 Kinesin-relat_1: Kine 94.0 0.03 6.5E-07 52.9 2.0 44 789-832 30-86 (86)
39 PRK03918 chromosome segregatio 93.9 11 0.00023 48.8 25.1 14 168-181 27-40 (880)
40 PRK02224 chromosome segregatio 93.8 25 0.00053 45.8 28.3 71 892-969 375-445 (880)
41 COG1196 Smc Chromosome segrega 93.8 14 0.0003 49.9 26.5 87 869-956 274-360 (1163)
42 TIGR02168 SMC_prok_B chromosom 93.6 16 0.00035 48.1 26.5 16 166-181 25-40 (1179)
43 TIGR02169 SMC_prok_A chromosom 93.4 19 0.00042 47.6 26.8 14 168-181 27-40 (1164)
44 PRK02224 chromosome segregatio 92.5 44 0.00096 43.5 29.5 15 167-181 26-40 (880)
45 TIGR00606 rad50 rad50. This fa 92.3 40 0.00086 46.3 27.7 123 934-1062 879-1006(1311)
46 PF00308 Bac_DnaA: Bacterial d 92.2 0.068 1.5E-06 58.0 1.7 51 130-183 3-53 (219)
47 PF12128 DUF3584: Protein of u 92.2 12 0.00026 50.6 22.6 47 1023-1069 466-512 (1201)
48 TIGR02169 SMC_prok_A chromosom 91.8 22 0.00047 47.1 24.1 24 1038-1061 460-483 (1164)
49 KOG0161 Myosin class II heavy 91.4 25 0.00054 49.5 24.2 93 996-1088 1485-1607(1930)
50 COG0556 UvrB Helicase subunit 91.4 0.38 8.3E-06 58.3 6.8 93 130-241 3-101 (663)
51 KOG0995 Centromere-associated 91.4 46 0.00099 41.4 24.8 213 776-1074 291-512 (581)
52 TIGR02168 SMC_prok_B chromosom 91.3 27 0.00058 46.1 24.2 25 1039-1063 858-882 (1179)
53 PRK09039 hypothetical protein; 91.2 17 0.00037 42.6 19.8 138 920-1074 65-207 (343)
54 PRK06893 DNA replication initi 91.2 0.13 2.8E-06 56.1 2.4 48 130-183 11-58 (229)
55 PF09726 Macoilin: Transmembra 91.1 22 0.00048 45.5 22.1 84 998-1081 548-661 (697)
56 KOG0980 Actin-binding protein 90.9 22 0.00048 45.8 21.1 27 929-955 424-450 (980)
57 PF05557 MAD: Mitotic checkpoi 90.6 2.1 4.5E-05 54.6 12.7 170 890-1074 464-640 (722)
58 KOG0994 Extracellular matrix g 89.8 37 0.0008 45.1 21.9 34 1034-1067 1683-1717(1758)
59 TIGR00606 rad50 rad50. This fa 89.8 47 0.001 45.6 24.9 205 874-1090 882-1098(1311)
60 COG2805 PilT Tfp pilus assembl 89.2 0.2 4.4E-06 57.2 1.9 31 152-182 113-143 (353)
61 KOG0977 Nuclear envelope prote 89.1 14 0.00031 45.7 17.3 133 912-1058 39-180 (546)
62 PF00261 Tropomyosin: Tropomyo 89.0 36 0.00079 37.7 19.2 191 868-1076 21-233 (237)
63 PF08317 Spc7: Spc7 kinetochor 88.9 22 0.00047 41.3 18.1 127 939-1071 173-300 (325)
64 KOG0612 Rho-associated, coiled 88.7 39 0.00085 45.2 21.4 22 161-182 85-106 (1317)
65 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.5 14 0.00029 37.5 14.2 123 907-1059 9-131 (132)
66 KOG0996 Structural maintenance 88.3 45 0.00097 44.5 21.4 142 919-1065 366-532 (1293)
67 KOG0994 Extracellular matrix g 88.2 39 0.00084 44.9 20.4 58 1019-1076 1429-1486(1758)
68 PRK06620 hypothetical protein; 88.0 0.24 5.3E-06 53.7 1.6 51 129-183 10-63 (214)
69 PHA02562 46 endonuclease subun 87.9 32 0.00069 42.2 19.7 25 889-913 215-239 (562)
70 TIGR02680 conserved hypothetic 87.9 44 0.00096 46.0 22.6 37 380-417 195-233 (1353)
71 PF05701 WEMBL: Weak chloropla 87.8 50 0.0011 41.0 21.2 118 940-1061 271-407 (522)
72 PRK03918 chromosome segregatio 87.7 75 0.0016 41.3 23.7 29 1063-1092 417-445 (880)
73 PF14662 CCDC155: Coiled-coil 87.6 16 0.00035 39.6 14.7 98 953-1074 39-139 (193)
74 PRK14086 dnaA chromosomal repl 87.4 0.33 7.2E-06 60.4 2.4 51 130-183 283-333 (617)
75 PRK08084 DNA replication initi 86.8 0.4 8.6E-06 52.6 2.4 49 129-183 16-64 (235)
76 PRK12377 putative replication 86.1 0.52 1.1E-05 52.6 2.8 51 131-183 70-120 (248)
77 PRK09087 hypothetical protein; 86.1 0.4 8.7E-06 52.5 1.9 48 130-183 16-63 (226)
78 COG0419 SbcC ATPase involved i 85.9 1E+02 0.0022 40.8 23.6 17 164-180 25-41 (908)
79 PRK14088 dnaA chromosomal repl 85.6 0.49 1.1E-05 56.8 2.5 51 129-183 99-149 (440)
80 PRK05642 DNA replication initi 85.6 0.56 1.2E-05 51.4 2.7 47 130-183 14-64 (234)
81 PF12128 DUF3584: Protein of u 85.2 51 0.0011 44.9 20.9 132 931-1076 415-547 (1201)
82 PRK14087 dnaA chromosomal repl 85.1 0.53 1.1E-05 56.7 2.5 50 131-183 111-160 (450)
83 PRK06569 F0F1 ATP synthase sub 84.9 24 0.00051 37.3 14.0 99 948-1075 39-138 (155)
84 cd07653 F-BAR_CIP4-like The F- 84.8 65 0.0014 35.6 18.3 142 931-1074 24-195 (251)
85 COG2804 PulE Type II secretory 84.6 0.42 9.1E-06 57.9 1.3 30 154-183 248-277 (500)
86 PF04851 ResIII: Type III rest 84.6 0.6 1.3E-05 47.2 2.2 27 157-183 17-44 (184)
87 PRK11637 AmiB activator; Provi 84.3 98 0.0021 37.2 20.8 22 890-911 43-64 (428)
88 PRK06526 transposase; Provisio 84.0 0.53 1.2E-05 52.6 1.7 41 138-183 77-117 (254)
89 PF10174 Cast: RIM-binding pro 83.8 1.5E+02 0.0033 38.7 24.1 65 1018-1082 540-607 (775)
90 PRK08116 hypothetical protein; 83.6 0.78 1.7E-05 51.5 2.8 52 130-183 80-133 (268)
91 TIGR00362 DnaA chromosomal rep 83.4 0.69 1.5E-05 54.5 2.4 52 129-183 104-155 (405)
92 PRK07952 DNA replication prote 83.0 0.76 1.6E-05 51.2 2.4 52 130-183 67-118 (244)
93 TIGR02928 orc1/cdc6 family rep 82.9 1 2.2E-05 51.7 3.5 46 135-181 11-57 (365)
94 PF12718 Tropomyosin_1: Tropom 82.7 64 0.0014 33.5 16.3 136 891-1064 4-139 (143)
95 PRK00411 cdc6 cell division co 82.7 1.2 2.6E-05 51.8 4.0 49 132-181 23-72 (394)
96 PF00038 Filament: Intermediat 82.5 95 0.0021 35.3 24.3 196 869-1074 89-306 (312)
97 PRK00149 dnaA chromosomal repl 82.2 0.78 1.7E-05 54.9 2.3 51 130-183 117-167 (450)
98 TIGR03420 DnaA_homol_Hda DnaA 82.1 1 2.2E-05 48.1 2.8 47 130-182 10-56 (226)
99 cd00009 AAA The AAA+ (ATPases 81.9 0.98 2.1E-05 42.9 2.4 25 157-181 12-36 (151)
100 TIGR02680 conserved hypothetic 81.7 2.4E+02 0.0051 39.3 26.5 16 167-182 27-42 (1353)
101 KOG4643 Uncharacterized coiled 81.6 1.3E+02 0.0029 39.9 20.9 165 905-1080 429-612 (1195)
102 PF10211 Ax_dynein_light: Axon 81.5 34 0.00073 37.0 14.0 100 888-1013 89-188 (189)
103 PF10212 TTKRSYEDQ: Predicted 81.0 18 0.00039 44.5 12.8 80 997-1076 415-498 (518)
104 KOG4001 Axonemal dynein light 81.0 18 0.0004 39.4 11.5 116 870-1012 135-252 (259)
105 KOG0996 Structural maintenance 80.8 1.4E+02 0.0031 40.2 21.1 99 955-1061 912-1012(1293)
106 KOG0971 Microtubule-associated 80.4 34 0.00074 44.4 15.1 40 1025-1064 384-427 (1243)
107 PLN02939 transferase, transfer 80.4 42 0.00091 44.5 16.6 42 968-1015 270-313 (977)
108 PRK08939 primosomal protein Dn 80.4 0.95 2.1E-05 51.9 2.0 51 132-183 124-175 (306)
109 PF00038 Filament: Intermediat 79.7 1.2E+02 0.0026 34.6 20.9 148 923-1074 111-264 (312)
110 KOG4673 Transcription factor T 79.4 2E+02 0.0042 37.0 23.6 143 916-1067 588-766 (961)
111 cd00046 DEXDc DEAD-like helica 79.2 0.71 1.5E-05 43.4 0.5 17 167-183 3-19 (144)
112 cd00632 Prefoldin_beta Prefold 79.0 37 0.00079 33.0 12.1 91 934-1064 4-94 (105)
113 COG0593 DnaA ATPase involved i 78.9 1.2 2.5E-05 53.2 2.2 52 129-183 81-132 (408)
114 PF13851 GAS: Growth-arrest sp 78.5 1.1E+02 0.0023 33.5 16.9 132 928-1072 4-139 (201)
115 PF11559 ADIP: Afadin- and alp 78.4 30 0.00066 35.5 12.0 93 977-1076 52-151 (151)
116 PRK08727 hypothetical protein; 78.1 1.3 2.9E-05 48.5 2.2 46 130-183 14-60 (233)
117 PRK08903 DnaA regulatory inact 78.1 1.7 3.6E-05 46.9 2.9 49 130-183 13-61 (227)
118 KOG4674 Uncharacterized conser 78.0 1.6E+02 0.0034 41.7 21.2 112 975-1086 1305-1436(1822)
119 PF13166 AAA_13: AAA domain 77.8 2.1E+02 0.0045 36.4 24.4 106 979-1084 365-478 (712)
120 KOG4674 Uncharacterized conser 77.6 2.3E+02 0.0051 40.2 22.5 160 890-1061 727-886 (1822)
121 PRK08181 transposase; Validate 77.4 1.8 3.8E-05 49.0 2.9 21 161-183 105-125 (269)
122 KOG2072 Translation initiation 77.1 2.5E+02 0.0053 36.9 24.6 45 681-734 470-515 (988)
123 PF05010 TACC: Transforming ac 77.0 1.2E+02 0.0026 33.5 16.6 109 920-1079 67-175 (207)
124 KOG0612 Rho-associated, coiled 76.9 2.9E+02 0.0064 37.6 23.0 112 958-1069 551-678 (1317)
125 COG1474 CDC6 Cdc6-related prot 76.9 1.9 4.1E-05 50.8 3.1 26 156-181 33-59 (366)
126 PF00015 MCPsignal: Methyl-acc 76.6 1E+02 0.0023 32.3 17.4 98 918-1018 5-116 (213)
127 PRK10436 hypothetical protein; 76.1 1.2 2.7E-05 53.8 1.4 29 155-183 209-237 (462)
128 TIGR02538 type_IV_pilB type IV 75.9 1.4 3E-05 54.7 1.7 29 155-183 307-335 (564)
129 PF00270 DEAD: DEAD/DEAH box h 75.5 1.5 3.3E-05 44.0 1.7 28 154-183 6-33 (169)
130 TIGR02338 gimC_beta prefoldin, 75.4 47 0.001 32.6 11.9 101 934-1074 8-108 (110)
131 TIGR03185 DNA_S_dndD DNA sulfu 75.3 2.4E+02 0.0052 35.9 23.3 68 995-1062 391-464 (650)
132 PF09731 Mitofilin: Mitochondr 75.2 98 0.0021 38.6 17.4 93 894-1021 251-345 (582)
133 PF01935 DUF87: Domain of unkn 75.1 1.1 2.4E-05 48.2 0.6 16 166-181 25-40 (229)
134 KOG2856 Adaptor protein PACSIN 74.8 5.9 0.00013 46.3 6.2 97 949-1073 110-210 (472)
135 cd07673 F-BAR_FCHO2 The F-BAR 74.6 91 0.002 35.5 15.5 64 937-1002 37-113 (269)
136 KOG0962 DNA repair protein RAD 74.5 3.5E+02 0.0075 37.3 22.6 69 905-973 346-437 (1294)
137 PF12846 AAA_10: AAA-like doma 74.2 1.2 2.6E-05 48.8 0.5 19 164-182 1-19 (304)
138 PF05622 HOOK: HOOK protein; 74.2 1 2.2E-05 57.2 0.0 109 891-1011 360-475 (713)
139 PRK06835 DNA replication prote 74.1 1.7 3.7E-05 50.4 1.8 31 152-183 172-202 (329)
140 PF13401 AAA_22: AAA domain; P 74.0 1.1 2.3E-05 43.4 0.1 18 164-181 4-21 (131)
141 TIGR02533 type_II_gspE general 73.9 1.6 3.5E-05 53.2 1.6 29 155-183 233-261 (486)
142 PF13514 AAA_27: AAA domain 73.8 3.4E+02 0.0074 36.9 23.2 44 931-974 675-722 (1111)
143 smart00382 AAA ATPases associa 73.3 1.3 2.8E-05 41.5 0.5 19 165-183 3-21 (148)
144 KOG0250 DNA repair protein RAD 73.1 3.4E+02 0.0074 36.6 22.2 109 938-1072 353-461 (1074)
145 COG1842 PspA Phage shock prote 72.8 1.6E+02 0.0035 32.9 16.4 40 917-956 33-72 (225)
146 TIGR01420 pilT_fam pilus retra 72.7 1.8 4E-05 50.2 1.6 29 155-183 113-141 (343)
147 PF13245 AAA_19: Part of AAA d 72.7 1.9 4.1E-05 39.7 1.4 27 156-183 3-29 (76)
148 PF00437 T2SE: Type II/IV secr 72.4 1.6 3.5E-05 48.3 1.1 18 164-181 127-144 (270)
149 KOG0976 Rho/Rac1-interacting s 72.3 3.1E+02 0.0068 35.8 20.3 20 779-798 169-188 (1265)
150 COG0419 SbcC ATPase involved i 72.2 3.3E+02 0.0072 36.1 23.3 29 937-965 563-594 (908)
151 PF04012 PspA_IM30: PspA/IM30 72.0 76 0.0016 34.5 13.7 43 1021-1063 86-128 (221)
152 COG1484 DnaC DNA replication p 71.5 3.2 6.9E-05 46.5 3.1 51 130-183 74-124 (254)
153 TIGR02525 plasmid_TraJ plasmid 71.4 2.2 4.7E-05 50.4 1.9 20 163-182 148-167 (372)
154 cd01131 PilT Pilus retraction 71.4 1.5 3.2E-05 46.8 0.5 19 164-182 1-19 (198)
155 PRK06921 hypothetical protein; 71.3 3 6.4E-05 47.0 2.8 32 152-183 102-136 (266)
156 cd07674 F-BAR_FCHO1 The F-BAR 71.1 1.9E+02 0.004 32.7 17.1 97 911-1024 15-121 (261)
157 PF09755 DUF2046: Uncharacteri 70.8 2.2E+02 0.0047 33.4 19.5 157 890-1061 23-192 (310)
158 TIGR02524 dot_icm_DotB Dot/Icm 70.4 2.3 5E-05 50.0 1.7 22 162-183 132-153 (358)
159 PRK04778 septation ring format 70.1 2.3E+02 0.005 35.6 18.9 59 914-972 222-285 (569)
160 PF06785 UPF0242: Uncharacteri 69.8 22 0.00049 41.3 9.1 84 991-1084 95-181 (401)
161 PF09727 CortBP2: Cortactin-bi 69.7 58 0.0013 35.6 11.8 85 920-1013 86-173 (192)
162 PF13604 AAA_30: AAA domain; P 69.6 2.6 5.6E-05 45.1 1.8 29 154-182 8-36 (196)
163 PF05557 MAD: Mitotic checkpoi 69.5 1.5 3.2E-05 55.8 -0.1 165 800-1020 266-433 (722)
164 cd01129 PulE-GspE PulE/GspE Th 69.3 2.8 6E-05 47.1 2.0 29 155-183 71-99 (264)
165 PTZ00112 origin recognition co 68.9 3.9 8.5E-05 53.1 3.4 21 161-181 778-798 (1164)
166 TIGR00634 recN DNA repair prot 68.9 52 0.0011 41.0 13.0 26 1051-1076 308-333 (563)
167 PRK09039 hypothetical protein; 67.6 35 0.00076 40.1 10.6 38 1024-1061 114-151 (343)
168 PF05103 DivIVA: DivIVA protei 67.1 3.7 8.1E-05 40.6 2.2 102 961-1066 5-126 (131)
169 KOG0989 Replication factor C, 67.1 4.1 8.9E-05 47.1 2.8 37 146-182 38-75 (346)
170 PRK12422 chromosomal replicati 66.9 3.6 7.9E-05 49.7 2.5 52 129-183 105-160 (445)
171 KOG1924 RhoA GTPase effector D 66.7 20 0.00044 45.7 8.6 8 384-391 843-850 (1102)
172 PRK10929 putative mechanosensi 66.3 3.5E+02 0.0076 37.0 20.2 27 889-915 67-93 (1109)
173 COG5008 PilU Tfp pilus assembl 66.3 3.7 8.1E-05 46.6 2.2 35 148-182 110-145 (375)
174 PF09726 Macoilin: Transmembra 65.9 3E+02 0.0066 35.7 18.9 39 1034-1072 623-661 (697)
175 TIGR01005 eps_transp_fam exopo 65.4 1.6E+02 0.0036 37.9 16.8 45 1003-1047 353-397 (754)
176 PF05667 DUF812: Protein of un 65.2 3.8E+02 0.0083 34.1 21.7 133 871-1027 403-541 (594)
177 PF05529 Bap31: B-cell recepto 65.2 45 0.00098 35.6 10.1 20 1045-1064 173-192 (192)
178 PF11802 CENP-K: Centromere-as 64.7 2E+02 0.0044 33.0 15.2 93 816-923 23-132 (268)
179 PF01637 Arch_ATPase: Archaeal 64.7 3.2 7E-05 43.5 1.3 29 154-182 10-38 (234)
180 smart00487 DEXDc DEAD-like hel 64.7 4.4 9.6E-05 40.5 2.3 27 156-183 17-43 (201)
181 PHA02544 44 clamp loader, smal 64.6 3.6 7.8E-05 46.5 1.7 23 161-183 39-62 (316)
182 KOG4673 Transcription factor T 64.5 1.7E+02 0.0037 37.5 15.5 51 914-964 511-565 (961)
183 PF01695 IstB_IS21: IstB-like 64.4 3.6 7.8E-05 43.5 1.6 19 165-183 48-66 (178)
184 PRK01297 ATP-dependent RNA hel 64.3 15 0.00033 44.3 7.1 26 154-181 116-141 (475)
185 PF05667 DUF812: Protein of un 64.3 2.8E+02 0.0062 35.3 18.0 60 890-950 331-390 (594)
186 TIGR03015 pepcterm_ATPase puta 63.3 4.2 9.2E-05 44.5 2.0 25 158-182 37-61 (269)
187 PF08317 Spc7: Spc7 kinetochor 63.3 3E+02 0.0064 32.2 19.4 53 890-945 78-137 (325)
188 PHA03155 hypothetical protein; 63.2 16 0.00034 36.6 5.5 25 980-1015 11-35 (115)
189 PTZ00454 26S protease regulato 62.8 5 0.00011 47.9 2.5 52 130-181 140-196 (398)
190 PRK09183 transposase/IS protei 62.4 3.9 8.4E-05 45.8 1.5 21 161-183 101-121 (259)
191 PF05970 PIF1: PIF1-like helic 62.4 4.7 0.0001 47.3 2.2 37 141-181 3-39 (364)
192 PRK09343 prefoldin subunit bet 62.3 1.4E+02 0.003 30.2 12.2 103 934-1076 12-114 (121)
193 TIGR02782 TrbB_P P-type conjug 61.9 3.9 8.4E-05 46.9 1.4 28 154-182 123-150 (299)
194 PF15070 GOLGA2L5: Putative go 61.5 4.5E+02 0.0098 33.7 20.6 33 937-969 123-158 (617)
195 PRK10869 recombination and rep 61.1 1.2E+02 0.0025 38.1 13.9 24 1053-1076 305-328 (553)
196 PF05673 DUF815: Protein of un 60.7 5.3 0.00012 44.9 2.1 129 132-306 24-155 (249)
197 KOG1103 Predicted coiled-coil 60.6 1.2E+02 0.0025 35.9 12.5 134 864-1014 137-285 (561)
198 PF00448 SRP54: SRP54-type pro 60.5 3.1 6.6E-05 44.8 0.2 17 166-182 3-19 (196)
199 KOG0249 LAR-interacting protei 60.4 4.8E+02 0.01 33.9 18.3 150 890-1078 105-257 (916)
200 PRK12402 replication factor C 60.3 6 0.00013 44.8 2.5 44 132-183 12-55 (337)
201 PF00004 AAA: ATPase family as 60.2 3.2 7E-05 39.8 0.3 15 167-181 1-15 (132)
202 PRK03992 proteasome-activating 60.2 3.2 6.8E-05 49.1 0.3 51 131-181 127-182 (389)
203 PF00580 UvrD-helicase: UvrD/R 60.2 3.8 8.3E-05 45.2 0.9 24 160-183 9-32 (315)
204 PRK13894 conjugal transfer ATP 59.5 5.2 0.00011 46.4 1.9 28 154-182 139-166 (319)
205 KOG0933 Structural maintenance 59.5 5E+02 0.011 35.0 18.8 67 998-1064 423-496 (1174)
206 COG3096 MukB Uncharacterized p 59.3 2.3E+02 0.0051 36.6 15.5 126 915-1076 897-1041(1480)
207 smart00806 AIP3 Actin interact 59.2 1.9E+02 0.0042 35.2 14.5 75 929-1004 203-277 (426)
208 PF13086 AAA_11: AAA domain; P 59.1 5.2 0.00011 41.9 1.7 28 155-183 9-36 (236)
209 KOG0239 Kinesin (KAR3 subfamil 58.9 1.8E+02 0.0039 37.5 15.1 70 891-991 186-255 (670)
210 COG5208 HAP5 CCAAT-binding fac 58.8 20 0.00044 39.3 5.9 70 940-1021 103-175 (286)
211 PF06005 DUF904: Protein of un 58.6 87 0.0019 29.1 9.2 51 934-1008 2-52 (72)
212 KOG0926 DEAH-box RNA helicase 58.1 16 0.00034 47.0 5.6 18 164-181 271-288 (1172)
213 KOG0946 ER-Golgi vesicle-tethe 57.9 5.7E+02 0.012 33.7 18.7 90 980-1074 733-829 (970)
214 PF09787 Golgin_A5: Golgin sub 57.9 4.6E+02 0.0099 32.6 19.7 24 984-1011 274-297 (511)
215 PLN00020 ribulose bisphosphate 57.4 7.8 0.00017 46.2 2.8 52 129-180 109-164 (413)
216 TIGR01242 26Sp45 26S proteasom 57.3 3 6.4E-05 48.6 -0.6 53 130-182 117-174 (364)
217 smart00053 DYNc Dynamin, GTPas 57.1 18 0.0004 40.4 5.6 53 270-340 85-137 (240)
218 COG4372 Uncharacterized protei 57.0 4.3E+02 0.0093 32.0 23.2 39 920-958 128-166 (499)
219 PF10168 Nup88: Nuclear pore c 56.9 4.2E+02 0.0091 34.5 18.0 65 936-1020 593-657 (717)
220 cd00890 Prefoldin Prefoldin is 56.4 1.3E+02 0.0028 29.6 10.9 109 934-1072 4-126 (129)
221 PRK13833 conjugal transfer pro 56.4 6.3 0.00014 45.8 1.9 28 154-182 135-162 (323)
222 KOG0980 Actin-binding protein 56.3 6.2E+02 0.013 33.7 24.5 113 894-1017 403-523 (980)
223 PF13207 AAA_17: AAA domain; P 56.0 4.1 8.9E-05 39.0 0.3 16 166-181 1-16 (121)
224 PRK04863 mukB cell division pr 56.0 8E+02 0.017 34.8 23.3 63 1028-1090 437-500 (1486)
225 PRK10884 SH3 domain-containing 56.0 1.4E+02 0.003 32.9 11.9 21 993-1013 130-150 (206)
226 KOG2115 Vacuolar sorting prote 55.7 1.3E+02 0.0028 39.5 12.9 74 1001-1081 274-353 (951)
227 PTZ00424 helicase 45; Provisio 55.7 6.2 0.00013 45.9 1.7 27 154-182 57-83 (401)
228 cd01130 VirB11-like_ATPase Typ 55.6 6.9 0.00015 41.2 1.9 28 154-182 16-43 (186)
229 PRK12723 flagellar biosynthesi 55.3 9.8 0.00021 45.4 3.2 19 164-182 174-192 (388)
230 cd07654 F-BAR_FCHSD The F-BAR 55.2 3.7E+02 0.008 30.7 16.4 66 978-1046 93-158 (264)
231 PF13479 AAA_24: AAA domain 55.0 4.6 0.0001 43.6 0.5 21 164-184 3-23 (213)
232 PF03915 AIP3: Actin interacti 54.8 4.8E+02 0.01 31.9 17.1 118 889-1008 153-277 (424)
233 PF03962 Mnd1: Mnd1 family; I 54.4 3.1E+02 0.0068 29.7 14.1 117 938-1074 64-180 (188)
234 cd00268 DEADc DEAD-box helicas 54.2 7.9 0.00017 40.5 2.1 25 155-181 29-53 (203)
235 PF01580 FtsK_SpoIIIE: FtsK/Sp 54.2 4.8 0.0001 42.7 0.4 18 166-183 40-57 (205)
236 cd07647 F-BAR_PSTPIP The F-BAR 54.1 3.5E+02 0.0075 30.1 15.8 99 934-1034 27-139 (239)
237 KOG0977 Nuclear envelope prote 54.0 5.6E+02 0.012 32.4 20.6 196 869-1065 120-342 (546)
238 PF10186 Atg14: UV radiation r 53.8 93 0.002 34.7 10.5 37 996-1032 64-100 (302)
239 COG4026 Uncharacterized protei 53.2 1.7E+02 0.0036 32.8 11.7 58 995-1062 149-206 (290)
240 KOG0964 Structural maintenance 53.1 3.7E+02 0.008 36.0 16.2 165 908-1089 214-421 (1200)
241 PRK13900 type IV secretion sys 52.8 9 0.0002 44.6 2.4 29 154-183 151-179 (332)
242 TIGR03499 FlhF flagellar biosy 52.7 11 0.00024 42.7 3.1 18 166-183 196-213 (282)
243 KOG0962 DNA repair protein RAD 52.5 8.3E+02 0.018 34.0 23.5 90 1001-1090 990-1085(1294)
244 PRK11776 ATP-dependent RNA hel 52.2 7.8 0.00017 46.5 1.8 25 155-181 34-58 (460)
245 PF00910 RNA_helicase: RNA hel 52.1 5.1 0.00011 38.6 0.2 15 167-181 1-15 (107)
246 PF10146 zf-C4H2: Zinc finger- 52.1 2.6E+02 0.0057 31.4 13.4 100 939-1062 4-103 (230)
247 COG4962 CpaF Flp pilus assembl 51.9 7.6 0.00016 45.6 1.6 27 154-181 164-190 (355)
248 PF02562 PhoH: PhoH-like prote 51.8 8.7 0.00019 42.0 1.9 21 163-183 18-38 (205)
249 PTZ00361 26 proteosome regulat 51.8 10 0.00022 45.9 2.7 49 133-181 181-234 (438)
250 CHL00081 chlI Mg-protoporyphyr 51.6 6.7 0.00015 46.1 1.1 46 130-183 12-57 (350)
251 PF12325 TMF_TATA_bd: TATA ele 51.4 2.2E+02 0.0048 28.9 11.6 74 973-1065 12-86 (120)
252 KOG3859 Septins (P-loop GTPase 51.3 13 0.00027 42.7 3.1 52 154-205 31-84 (406)
253 PF13191 AAA_16: AAA ATPase do 51.1 5.3 0.00012 40.7 0.2 21 161-181 21-41 (185)
254 cd07652 F-BAR_Rgd1 The F-BAR ( 51.1 3.9E+02 0.0085 29.8 16.6 47 975-1021 81-130 (234)
255 PF07728 AAA_5: AAA domain (dy 50.0 5.9 0.00013 39.2 0.3 15 167-181 2-16 (139)
256 PRK13851 type IV secretion sys 50.0 6.3 0.00014 46.2 0.5 29 154-183 153-181 (344)
257 KOG1924 RhoA GTPase effector D 49.8 47 0.001 42.6 7.8 8 144-151 655-662 (1102)
258 TIGR03007 pepcterm_ChnLen poly 49.5 5.7E+02 0.012 31.2 19.8 65 934-998 202-268 (498)
259 PF13671 AAA_33: AAA domain; P 49.3 6.5 0.00014 38.6 0.5 15 167-181 2-16 (143)
260 smart00763 AAA_PrkA PrkA AAA d 49.3 29 0.00063 41.2 5.8 67 136-210 52-142 (361)
261 PF03962 Mnd1: Mnd1 family; I 49.1 1.2E+02 0.0026 32.9 9.9 83 988-1074 62-144 (188)
262 PRK09174 F0F1 ATP synthase sub 48.9 3.7E+02 0.008 29.5 13.7 96 948-1075 82-177 (204)
263 PF06818 Fez1: Fez1; InterPro 48.6 1.5E+02 0.0033 32.6 10.6 91 984-1077 10-106 (202)
264 KOG4643 Uncharacterized coiled 48.5 8.6E+02 0.019 33.0 23.9 128 930-1061 423-558 (1195)
265 TIGR00635 ruvB Holliday juncti 48.4 12 0.00026 42.0 2.5 40 142-182 7-48 (305)
266 TIGR03007 pepcterm_ChnLen poly 48.3 5.9E+02 0.013 31.0 22.1 89 932-1020 250-349 (498)
267 PF13238 AAA_18: AAA domain; P 48.2 6.7 0.00015 37.4 0.4 15 167-181 1-15 (129)
268 PRK13764 ATPase; Provisional 48.2 8.9 0.00019 48.1 1.5 20 164-183 257-276 (602)
269 PRK11192 ATP-dependent RNA hel 48.2 9.7 0.00021 45.2 1.8 26 154-181 30-55 (434)
270 PF08614 ATG16: Autophagy prot 48.1 1.8E+02 0.0039 31.3 11.1 63 890-952 119-181 (194)
271 PHA00729 NTP-binding motif con 47.4 11 0.00025 41.7 2.0 32 152-183 5-36 (226)
272 PF07724 AAA_2: AAA domain (Cd 47.4 6.6 0.00014 41.4 0.2 17 165-181 4-20 (171)
273 PF06048 DUF927: Domain of unk 47.4 13 0.00027 42.3 2.4 34 147-181 177-210 (286)
274 PF01576 Myosin_tail_1: Myosin 47.3 6.3 0.00014 51.4 0.0 139 947-1085 374-546 (859)
275 PF05769 DUF837: Protein of un 47.2 4.1E+02 0.0088 28.8 15.4 83 914-1012 83-177 (181)
276 TIGR00293 prefoldin, archaeal 47.1 1.6E+02 0.0036 29.2 10.0 94 934-1071 4-124 (126)
277 PF07798 DUF1640: Protein of u 47.0 1.4E+02 0.003 31.8 9.9 33 1044-1076 117-149 (177)
278 PRK08476 F0F1 ATP synthase sub 46.8 3.4E+02 0.0074 27.9 14.2 98 948-1074 36-134 (141)
279 PRK10884 SH3 domain-containing 46.5 1.2E+02 0.0026 33.5 9.5 33 1032-1064 124-156 (206)
280 COG1419 FlhF Flagellar GTP-bin 46.5 13 0.00029 44.5 2.4 37 145-181 180-220 (407)
281 PRK13342 recombination factor 46.5 10 0.00022 45.1 1.6 28 155-182 27-54 (413)
282 PLN03025 replication factor C 46.3 12 0.00026 42.9 2.0 22 162-183 32-53 (319)
283 COG0497 RecN ATPase involved i 46.1 3E+02 0.0064 34.8 13.7 25 1054-1078 307-331 (557)
284 KOG0995 Centromere-associated 46.1 4.9E+02 0.011 32.9 15.3 23 991-1013 304-326 (581)
285 PF05483 SCP-1: Synaptonemal c 45.7 8.1E+02 0.017 31.9 17.3 123 931-1084 529-673 (786)
286 PHA03162 hypothetical protein; 45.7 61 0.0013 33.4 6.5 26 978-1014 14-39 (135)
287 PRK04837 ATP-dependent RNA hel 45.1 12 0.00026 44.4 1.9 25 155-181 38-62 (423)
288 PF08826 DMPK_coil: DMPK coile 45.0 97 0.0021 28.0 7.0 24 1038-1061 37-60 (61)
289 KOG2543 Origin recognition com 44.8 8.3 0.00018 45.8 0.5 15 167-181 33-47 (438)
290 PF10174 Cast: RIM-binding pro 44.7 8.9E+02 0.019 32.0 20.3 93 872-964 442-539 (775)
291 PF14662 CCDC155: Coiled-coil 44.5 2E+02 0.0043 31.6 10.5 66 996-1061 37-109 (193)
292 PRK11448 hsdR type I restricti 44.4 12 0.00026 50.3 1.8 34 149-183 419-452 (1123)
293 PRK10536 hypothetical protein; 44.4 11 0.00024 42.8 1.3 42 131-182 51-92 (262)
294 PF03215 Rad17: Rad17 cell cyc 44.2 13 0.00028 46.0 1.9 28 154-181 33-62 (519)
295 cd07656 F-BAR_srGAP The F-BAR 44.2 2.6E+02 0.0057 31.4 12.0 91 977-1070 92-199 (241)
296 COG3028 Uncharacterized protei 43.9 40 0.00088 36.1 5.2 64 1008-1071 29-117 (187)
297 PRK06547 hypothetical protein; 43.7 14 0.00031 39.0 2.0 28 154-181 5-32 (172)
298 PF07106 TBPIP: Tat binding pr 43.5 62 0.0014 33.9 6.7 22 444-465 72-93 (169)
299 PRK14722 flhF flagellar biosyn 43.1 9.3 0.0002 45.4 0.6 20 164-183 137-156 (374)
300 cd07657 F-BAR_Fes_Fer The F-BA 43.1 1.8E+02 0.0038 32.6 10.4 44 978-1021 88-131 (237)
301 PF00063 Myosin_head: Myosin h 43.0 14 0.00031 46.9 2.2 35 147-181 68-102 (689)
302 TIGR03752 conj_TIGR03752 integ 42.8 1.4E+02 0.003 36.8 10.0 44 978-1021 60-106 (472)
303 TIGR02977 phageshock_pspA phag 42.2 5.1E+02 0.011 28.5 13.9 28 931-958 122-149 (219)
304 PRK03947 prefoldin subunit alp 42.0 3.2E+02 0.007 27.7 11.3 47 1030-1076 91-137 (140)
305 PRK10590 ATP-dependent RNA hel 41.9 15 0.00033 44.2 2.1 26 154-181 30-55 (456)
306 PF06414 Zeta_toxin: Zeta toxi 41.7 9.8 0.00021 40.5 0.4 18 164-181 15-32 (199)
307 TIGR00348 hsdR type I site-spe 41.7 16 0.00035 46.4 2.4 31 152-183 247-282 (667)
308 PRK00440 rfc replication facto 41.7 18 0.00039 40.5 2.5 21 161-181 35-55 (319)
309 TIGR02881 spore_V_K stage V sp 41.0 11 0.00025 41.8 0.8 18 165-182 43-60 (261)
310 COG3829 RocR Transcriptional r 40.5 21 0.00045 44.2 2.9 44 129-178 239-282 (560)
311 TIGR01241 FtsH_fam ATP-depende 40.3 10 0.00022 46.2 0.3 50 131-181 51-105 (495)
312 PF15290 Syntaphilin: Golgi-lo 39.8 61 0.0013 37.2 6.1 34 508-548 122-155 (305)
313 PRK00080 ruvB Holliday junctio 39.7 21 0.00045 41.1 2.7 18 165-182 52-69 (328)
314 TIGR02977 phageshock_pspA phag 39.6 5.1E+02 0.011 28.5 13.2 50 918-974 34-83 (219)
315 KOG0727 26S proteasome regulat 39.5 41 0.00089 38.3 4.7 84 132-215 152-247 (408)
316 PF15619 Lebercilin: Ciliary p 39.5 5.5E+02 0.012 28.1 17.5 31 923-953 37-67 (194)
317 COG1223 Predicted ATPase (AAA+ 39.3 12 0.00025 42.8 0.5 18 164-181 151-168 (368)
318 PF05529 Bap31: B-cell recepto 39.2 94 0.002 33.2 7.3 28 1043-1074 157-184 (192)
319 PRK00409 recombination and DNA 39.0 6.3E+02 0.014 33.3 15.8 19 1044-1062 604-622 (782)
320 COG5019 CDC3 Septin family pro 38.8 97 0.0021 37.0 7.8 24 161-184 20-46 (373)
321 KOG2373 Predicted mitochondria 38.4 19 0.00042 42.4 2.1 28 154-182 261-291 (514)
322 TIGR00614 recQ_fam ATP-depende 38.1 17 0.00037 44.0 1.7 26 154-181 18-43 (470)
323 PRK11634 ATP-dependent RNA hel 38.0 18 0.00039 45.8 1.9 25 155-181 36-60 (629)
324 KOG0335 ATP-dependent RNA heli 37.8 13 0.00029 45.3 0.7 23 160-184 109-131 (482)
325 PF05729 NACHT: NACHT domain 37.7 13 0.00028 37.0 0.5 17 166-182 2-18 (166)
326 TIGR00631 uvrb excinuclease AB 37.5 21 0.00046 45.3 2.5 93 132-241 2-98 (655)
327 cd01120 RecA-like_NTPases RecA 37.5 12 0.00027 36.6 0.4 16 167-182 2-17 (165)
328 PF15070 GOLGA2L5: Putative go 37.4 1E+03 0.022 30.7 19.7 27 923-949 154-180 (617)
329 PRK04195 replication factor C 37.3 14 0.00031 44.8 1.0 28 154-181 28-56 (482)
330 PF05496 RuvB_N: Holliday junc 37.3 33 0.00071 38.4 3.6 41 139-180 24-66 (233)
331 PF09057 Smac_DIABLO: Second M 36.9 6.6E+02 0.014 28.4 14.0 120 923-1076 87-217 (234)
332 PRK11331 5-methylcytosine-spec 36.8 17 0.00038 44.2 1.5 27 397-427 320-346 (459)
333 PF00769 ERM: Ezrin/radixin/mo 36.7 1.6E+02 0.0034 33.2 8.8 54 1000-1056 17-70 (246)
334 PF12775 AAA_7: P-loop contain 36.7 17 0.00036 41.3 1.2 27 155-182 25-51 (272)
335 KOG0651 26S proteasome regulat 36.6 15 0.00032 42.8 0.9 88 128-215 125-224 (388)
336 PRK13341 recombination factor 36.6 21 0.00045 46.0 2.2 23 161-183 49-71 (725)
337 PF06631 DUF1154: Protein of u 36.6 33 0.00072 29.5 2.7 22 1050-1071 25-46 (47)
338 KOG3612 PHD Zn-finger protein 36.5 2.4E+02 0.0052 35.3 10.7 100 944-1071 424-525 (588)
339 PF02841 GBP_C: Guanylate-bind 36.5 7.1E+02 0.015 28.6 19.3 44 905-948 113-167 (297)
340 COG0711 AtpF F0F1-type ATP syn 36.5 5.3E+02 0.012 27.1 13.1 53 948-1017 35-87 (161)
341 PF07111 HCR: Alpha helical co 36.5 1.1E+03 0.024 30.8 16.9 70 995-1064 190-259 (739)
342 PRK13455 F0F1 ATP synthase sub 36.4 5.6E+02 0.012 27.3 13.0 53 948-1017 56-108 (184)
343 PHA02244 ATPase-like protein 36.2 26 0.00056 41.9 2.7 33 147-181 104-136 (383)
344 PRK04537 ATP-dependent RNA hel 36.1 19 0.00042 44.9 1.8 25 155-181 39-63 (572)
345 PF06309 Torsin: Torsin; Inte 36.0 32 0.00069 35.2 3.0 28 154-181 39-70 (127)
346 PRK10416 signal recognition pa 36.0 25 0.00055 40.8 2.6 18 165-182 115-132 (318)
347 PRK14961 DNA polymerase III su 35.8 23 0.00051 41.5 2.3 41 133-181 14-55 (363)
348 COG1219 ClpX ATP-dependent pro 35.8 15 0.00032 43.0 0.7 17 164-180 97-113 (408)
349 PF06548 Kinesin-related: Kine 35.8 9.4E+02 0.02 29.8 17.7 152 887-1061 309-480 (488)
350 PRK10865 protein disaggregatio 35.8 28 0.00061 45.6 3.3 45 132-181 565-615 (857)
351 PF07693 KAP_NTPase: KAP famil 35.5 21 0.00046 40.2 1.8 20 162-181 18-37 (325)
352 TIGR02030 BchI-ChlI magnesium 35.4 24 0.00052 41.4 2.3 44 132-183 1-44 (337)
353 TIGR02640 gas_vesic_GvpN gas v 35.3 24 0.00053 39.4 2.3 30 150-181 9-38 (262)
354 KOG0971 Microtubule-associated 35.3 1.3E+03 0.028 31.2 17.6 51 890-941 406-456 (1243)
355 PF13851 GAS: Growth-arrest sp 35.2 3.8E+02 0.0082 29.4 11.2 87 976-1062 26-115 (201)
356 PRK00771 signal recognition pa 35.2 33 0.00072 41.6 3.5 19 164-182 95-113 (437)
357 PF12709 Kinetocho_Slk19: Cent 35.2 2.3E+02 0.0049 27.5 8.2 69 1007-1075 2-84 (87)
358 PF09744 Jnk-SapK_ap_N: JNK_SA 35.1 2.1E+02 0.0046 30.4 8.9 69 881-957 76-145 (158)
359 PF15066 CAGE1: Cancer-associa 35.0 9.8E+02 0.021 29.8 19.4 52 774-833 308-372 (527)
360 PRK05759 F0F1 ATP synthase sub 35.0 4.1E+02 0.009 27.2 11.0 53 948-1017 33-85 (156)
361 PRK06067 flagellar accessory p 35.0 20 0.00044 38.9 1.6 31 151-181 9-42 (234)
362 PRK05580 primosome assembly pr 34.9 17 0.00038 46.2 1.2 35 140-182 145-180 (679)
363 PF13476 AAA_23: AAA domain; P 34.9 14 0.0003 38.0 0.2 17 165-181 20-36 (202)
364 PF04568 IATP: Mitochondrial A 34.8 80 0.0017 31.2 5.4 47 1017-1074 46-92 (100)
365 PF02456 Adeno_IVa2: Adenoviru 34.8 14 0.0003 43.0 0.2 17 167-183 90-106 (369)
366 TIGR02788 VirB11 P-type DNA tr 34.7 24 0.00053 40.4 2.2 30 152-182 133-162 (308)
367 PF06248 Zw10: Centromere/kine 34.6 6.1E+02 0.013 32.0 14.4 105 931-1059 31-141 (593)
368 cd01123 Rad51_DMC1_radA Rad51_ 34.5 19 0.00041 38.8 1.2 30 152-181 4-36 (235)
369 PRK11281 hypothetical protein; 34.4 9.8E+02 0.021 33.0 16.8 72 938-1009 82-153 (1113)
370 TIGR03158 cas3_cyano CRISPR-as 34.4 23 0.00049 41.5 1.9 26 156-181 6-31 (357)
371 TIGR02903 spore_lon_C ATP-depe 34.4 23 0.0005 44.7 2.1 43 131-181 150-192 (615)
372 PF07111 HCR: Alpha helical co 34.3 1.2E+03 0.026 30.5 19.7 69 1020-1088 170-241 (739)
373 TIGR02902 spore_lonB ATP-depen 34.2 22 0.00048 44.0 1.9 44 130-181 60-103 (531)
374 PRK14974 cell division protein 34.1 37 0.00081 39.8 3.6 19 164-182 140-158 (336)
375 COG1382 GimC Prefoldin, chaper 34.1 5.3E+02 0.012 26.4 12.7 100 934-1073 11-110 (119)
376 KOG0978 E3 ubiquitin ligase in 33.9 7E+02 0.015 32.5 14.5 91 894-991 552-642 (698)
377 COG3599 DivIVA Cell division i 33.9 5.4E+02 0.012 28.7 12.1 102 959-1066 8-135 (212)
378 PF12352 V-SNARE_C: Snare regi 33.7 2.7E+02 0.0058 24.6 8.2 65 998-1062 1-65 (66)
379 PF15619 Lebercilin: Ciliary p 33.6 4.9E+02 0.011 28.5 11.6 93 983-1075 56-160 (194)
380 PF05837 CENP-H: Centromere pr 33.4 1.2E+02 0.0025 30.0 6.3 50 943-998 3-52 (106)
381 cd01126 TraG_VirD4 The TraG/Tr 33.4 19 0.00042 42.2 1.1 16 167-182 2-17 (384)
382 TIGR01243 CDC48 AAA family ATP 33.3 17 0.00036 46.7 0.6 51 131-181 174-229 (733)
383 PRK10698 phage shock protein P 33.3 3.4E+02 0.0074 30.2 10.6 93 953-1065 34-131 (222)
384 PF04880 NUDE_C: NUDE protein, 33.2 62 0.0013 34.6 4.7 41 939-1014 3-43 (166)
385 smart00242 MYSc Myosin. Large 33.2 33 0.00071 43.8 3.2 36 146-181 74-109 (677)
386 PF08549 SWI-SNF_Ssr4: Fungal 33.1 54 0.0012 41.6 4.8 49 1038-1086 362-414 (669)
387 TIGR02237 recomb_radB DNA repa 33.1 19 0.00041 38.2 0.9 25 157-181 2-29 (209)
388 PF09311 Rab5-bind: Rabaptin-l 33.0 27 0.00058 37.4 2.0 56 975-1030 6-64 (181)
389 PRK05703 flhF flagellar biosyn 32.9 16 0.00035 44.0 0.4 19 165-183 222-240 (424)
390 TIGR00376 DNA helicase, putati 32.6 23 0.0005 44.9 1.7 28 155-183 165-192 (637)
391 PLN00206 DEAD-box ATP-dependen 32.3 28 0.00061 42.8 2.3 25 155-181 151-175 (518)
392 TIGR02746 TraC-F-type type-IV 32.3 17 0.00038 46.6 0.6 19 164-182 430-448 (797)
393 TIGR01618 phage_P_loop phage n 32.2 17 0.00036 40.2 0.3 22 164-185 12-33 (220)
394 PRK04328 hypothetical protein; 32.1 24 0.00052 39.2 1.5 28 152-179 8-38 (249)
395 PRK15422 septal ring assembly 32.0 1.9E+02 0.0042 27.5 7.0 60 903-962 20-79 (79)
396 PF07926 TPR_MLP1_2: TPR/MLP1/ 32.0 5.6E+02 0.012 26.0 15.8 116 891-1012 14-129 (132)
397 CHL00176 ftsH cell division pr 32.0 19 0.00041 45.7 0.8 44 781-824 582-625 (638)
398 PF10789 Phage_RpbA: Phage RNA 31.9 72 0.0016 31.9 4.5 38 915-954 26-67 (108)
399 cd01127 TrwB Bacterial conjuga 31.9 17 0.00037 43.3 0.4 18 164-181 42-59 (410)
400 COG1222 RPT1 ATP-dependent 26S 31.9 38 0.00083 40.3 3.1 49 132-180 148-201 (406)
401 PRK09361 radB DNA repair and r 31.6 23 0.0005 38.1 1.3 32 151-182 7-41 (225)
402 cd02021 GntK Gluconate kinase 31.5 18 0.00039 36.2 0.4 15 167-181 2-16 (150)
403 cd01393 recA_like RecA is a b 31.5 25 0.00055 37.6 1.6 32 151-182 3-37 (226)
404 PF13173 AAA_14: AAA domain 31.4 19 0.00041 35.5 0.6 18 165-182 3-20 (128)
405 TIGR01817 nifA Nif-specific re 31.4 25 0.00054 43.3 1.7 46 130-181 191-236 (534)
406 PRK14475 F0F1 ATP synthase sub 31.4 6.4E+02 0.014 26.5 12.9 53 948-1017 39-91 (167)
407 PF00735 Septin: Septin; Inte 31.2 13 0.00029 42.3 -0.7 20 161-180 1-20 (281)
408 TIGR01359 UMP_CMP_kin_fam UMP- 31.2 20 0.00042 37.1 0.6 14 167-180 2-15 (183)
409 cd07686 F-BAR_Fer The F-BAR (F 31.1 7.6E+02 0.017 27.9 12.9 40 978-1017 88-127 (234)
410 PRK06995 flhF flagellar biosyn 31.1 18 0.00039 44.4 0.4 18 165-182 257-274 (484)
411 PF10236 DAP3: Mitochondrial r 31.0 27 0.00058 40.3 1.8 23 161-183 20-42 (309)
412 KOG1363 Predicted regulator of 31.0 2.1E+02 0.0046 35.2 9.3 48 918-965 243-290 (460)
413 TIGR03744 traC_PFL_4706 conjug 31.0 19 0.0004 47.4 0.5 19 164-182 475-493 (893)
414 PF13514 AAA_27: AAA domain 31.0 1.5E+03 0.033 30.8 21.9 20 891-910 805-824 (1111)
415 COG1201 Lhr Lhr-like helicases 30.9 28 0.00061 45.2 2.1 25 155-181 30-54 (814)
416 PF09728 Taxilin: Myosin-like 30.9 9.2E+02 0.02 28.2 17.8 158 877-1059 97-256 (309)
417 TIGR03819 heli_sec_ATPase heli 30.8 25 0.00055 41.1 1.5 29 153-182 168-196 (340)
418 PRK00131 aroK shikimate kinase 30.7 20 0.00043 36.2 0.6 17 165-181 5-21 (175)
419 PRK10917 ATP-dependent DNA hel 30.6 29 0.00062 44.3 2.1 40 139-182 261-300 (681)
420 KOG0249 LAR-interacting protei 30.6 2.7E+02 0.0059 36.0 10.0 33 984-1016 94-126 (916)
421 PRK14723 flhF flagellar biosyn 30.5 38 0.00082 43.9 3.1 18 165-182 186-203 (767)
422 CHL00181 cbbX CbbX; Provisiona 30.3 45 0.00098 38.1 3.4 15 167-181 62-76 (287)
423 TIGR00219 mreC rod shape-deter 30.2 1.2E+02 0.0026 34.8 6.7 18 997-1014 68-85 (283)
424 cd07651 F-BAR_PombeCdc15_like 30.2 7.8E+02 0.017 27.2 17.6 89 933-1023 26-128 (236)
425 PF07851 TMPIT: TMPIT-like pro 30.2 2.3E+02 0.0049 33.6 8.9 34 935-968 3-36 (330)
426 TIGR03689 pup_AAA proteasome A 30.0 20 0.00043 44.4 0.5 17 165-181 217-233 (512)
427 TIGR01389 recQ ATP-dependent D 29.9 27 0.00059 43.5 1.7 27 153-181 19-45 (591)
428 cd01384 MYSc_type_XI Myosin mo 29.8 42 0.0009 43.0 3.3 21 161-181 85-105 (674)
429 PHA02653 RNA helicase NPH-II; 29.7 36 0.00079 43.5 2.7 25 154-180 171-195 (675)
430 PF13555 AAA_29: P-loop contai 29.6 20 0.00044 32.2 0.4 15 167-181 26-40 (62)
431 PRK13428 F0F1 ATP synthase sub 29.6 6.5E+02 0.014 30.9 13.1 53 948-1017 30-82 (445)
432 cd01850 CDC_Septin CDC/Septin. 29.6 20 0.00043 40.6 0.4 21 161-181 1-21 (276)
433 PF08580 KAR9: Yeast cortical 29.5 4.8E+02 0.011 33.8 12.4 68 932-1015 312-380 (683)
434 PRK11889 flhF flagellar biosyn 29.2 42 0.00091 40.6 3.0 18 165-182 242-259 (436)
435 PRK07261 topology modulation p 29.2 22 0.00048 37.2 0.6 15 167-181 3-17 (171)
436 COG0630 VirB11 Type IV secreto 29.1 21 0.00045 41.4 0.4 20 164-183 143-162 (312)
437 cd00464 SK Shikimate kinase (S 29.0 23 0.0005 35.2 0.7 16 166-181 1-16 (154)
438 PRK11637 AmiB activator; Provi 28.9 1.1E+03 0.024 28.5 22.9 16 955-970 122-137 (428)
439 COG2256 MGS1 ATPase related to 28.9 26 0.00055 42.2 1.1 36 144-180 29-64 (436)
440 PF06005 DUF904: Protein of un 28.8 3.7E+02 0.008 25.1 8.3 25 1047-1071 39-63 (72)
441 smart00489 DEXDc3 DEAD-like he 28.8 37 0.00079 38.8 2.3 38 140-183 9-46 (289)
442 smart00488 DEXDc2 DEAD-like he 28.8 37 0.00079 38.8 2.3 38 140-183 9-46 (289)
443 PRK09270 nucleoside triphospha 28.8 45 0.00098 36.3 2.9 36 146-181 14-50 (229)
444 cd00124 MYSc Myosin motor doma 28.6 43 0.00093 42.8 3.1 27 155-181 76-103 (679)
445 cd01383 MYSc_type_VIII Myosin 28.4 47 0.001 42.5 3.4 21 161-181 89-109 (677)
446 cd01428 ADK Adenylate kinase ( 28.3 23 0.00051 36.7 0.6 15 167-181 2-16 (194)
447 COG1125 OpuBA ABC-type proline 28.2 23 0.00049 40.5 0.5 37 400-444 185-221 (309)
448 PF06401 Alpha-2-MRAP_C: Alpha 28.1 8.9E+02 0.019 27.2 12.5 117 940-1068 73-207 (214)
449 PRK15429 formate hydrogenlyase 28.1 33 0.00071 43.7 2.0 45 131-181 372-416 (686)
450 cd01378 MYSc_type_I Myosin mot 28.0 48 0.001 42.5 3.3 21 161-181 83-103 (674)
451 TIGR01313 therm_gnt_kin carboh 27.9 22 0.00048 36.1 0.4 14 167-180 1-14 (163)
452 cd01385 MYSc_type_IX Myosin mo 27.8 46 0.001 42.7 3.2 21 161-181 91-111 (692)
453 PF06160 EzrA: Septation ring 27.7 1.3E+03 0.029 29.0 19.7 159 895-1081 272-437 (560)
454 smart00787 Spc7 Spc7 kinetocho 27.6 1.1E+03 0.023 27.8 17.7 119 938-1069 174-293 (312)
455 cd01394 radB RadB. The archaea 27.6 35 0.00076 36.5 1.8 30 152-181 4-36 (218)
456 cd01387 MYSc_type_XV Myosin mo 27.4 50 0.0011 42.3 3.3 21 161-181 84-104 (677)
457 PF06745 KaiC: KaiC; InterPro 27.4 33 0.00072 36.9 1.6 27 154-180 6-35 (226)
458 KOG4010 Coiled-coil protein TP 27.4 86 0.0019 34.1 4.5 32 1040-1075 37-68 (208)
459 cd01381 MYSc_type_VII Myosin m 27.4 50 0.0011 42.3 3.3 21 161-181 83-103 (671)
460 PRK08118 topology modulation p 27.3 25 0.00054 36.7 0.6 14 167-180 4-17 (167)
461 PRK11034 clpA ATP-dependent Cl 27.3 46 0.001 43.2 3.1 18 164-181 488-505 (758)
462 cd03407 Band_7_4 A subgroup of 27.2 9.2E+02 0.02 27.0 14.5 48 953-1003 110-167 (262)
463 TIGR03513 GldL_gliding gliding 27.1 6.6E+02 0.014 27.9 11.2 55 1002-1070 148-202 (202)
464 TIGR00643 recG ATP-dependent D 27.0 36 0.00079 42.9 2.1 39 139-181 235-273 (630)
465 cd01382 MYSc_type_VI Myosin mo 27.0 48 0.001 42.7 3.1 22 160-181 87-108 (717)
466 PF14915 CCDC144C: CCDC144C pr 26.7 1.1E+03 0.024 27.8 15.4 26 984-1009 260-285 (305)
467 TIGR02880 cbbX_cfxQ probable R 26.7 24 0.00053 40.0 0.4 16 166-181 60-75 (284)
468 PF04568 IATP: Mitochondrial A 26.6 2.6E+02 0.0056 27.7 7.3 26 1049-1074 74-99 (100)
469 cd06396 PB1_NBR1 The PB1 domai 26.5 34 0.00075 32.4 1.3 15 876-890 42-56 (81)
470 KOG2606 OTU (ovarian tumor)-li 26.5 2E+02 0.0044 33.4 7.4 129 946-1086 15-166 (302)
471 TIGR03185 DNA_S_dndD DNA sulfu 26.4 1.5E+03 0.031 29.1 23.3 30 941-970 389-418 (650)
472 PHA02624 large T antigen; Prov 26.3 46 0.001 42.1 2.7 28 155-182 420-449 (647)
473 PF07407 Seadorna_VP6: Seadorn 26.3 1.8E+02 0.0038 34.3 7.0 58 984-1060 32-89 (420)
474 PF10481 CENP-F_N: Cenp-F N-te 26.2 2.4E+02 0.0053 32.5 7.9 58 894-954 102-180 (307)
475 TIGR00929 VirB4_CagE type IV s 26.2 25 0.00055 45.0 0.5 18 164-181 434-451 (785)
476 KOG0979 Structural maintenance 26.2 1.8E+03 0.039 30.1 18.3 121 930-1084 235-360 (1072)
477 cd02020 CMPK Cytidine monophos 26.0 27 0.0006 34.2 0.6 15 167-181 2-16 (147)
478 PRK14721 flhF flagellar biosyn 26.0 26 0.00056 42.4 0.5 19 164-182 191-209 (420)
479 PF08614 ATG16: Autophagy prot 26.0 1E+02 0.0023 33.1 5.0 29 929-957 17-45 (194)
480 KOG0738 AAA+-type ATPase [Post 26.0 2.2E+02 0.0048 34.7 7.9 48 132-179 209-260 (491)
481 PRK12724 flagellar biosynthesi 25.9 49 0.0011 40.2 2.7 18 165-182 224-241 (432)
482 COG4942 Membrane-bound metallo 25.8 1.3E+03 0.029 28.4 23.4 82 891-972 49-130 (420)
483 cd03403 Band_7_stomatin_like B 25.8 8.4E+02 0.018 26.1 12.2 85 954-1042 112-207 (215)
484 PRK08233 hypothetical protein; 25.8 27 0.00059 35.7 0.6 15 167-181 6-20 (182)
485 PF15030 DUF4527: Protein of u 25.7 1.6E+02 0.0035 33.3 6.4 31 998-1028 19-52 (277)
486 COG1579 Zn-ribbon protein, pos 25.7 1E+03 0.022 27.1 17.0 128 935-1073 6-136 (239)
487 KOG0953 Mitochondrial RNA heli 25.7 29 0.00063 43.1 0.9 45 167-215 194-238 (700)
488 TIGR02639 ClpA ATP-dependent C 25.7 49 0.0011 42.6 2.9 36 144-180 459-500 (731)
489 TIGR00064 ftsY signal recognit 25.7 25 0.00054 39.9 0.3 18 165-182 73-90 (272)
490 PRK06696 uridine kinase; Valid 25.5 51 0.0011 35.8 2.6 29 153-181 8-39 (223)
491 PF08657 DASH_Spc34: DASH comp 25.5 2.4E+02 0.0052 32.3 7.9 34 930-963 165-200 (259)
492 PRK12726 flagellar biosynthesi 25.4 27 0.00058 42.0 0.4 19 165-183 207-225 (407)
493 TIGR02322 phosphon_PhnN phosph 25.4 26 0.00056 36.3 0.3 16 166-181 3-18 (179)
494 KOG1803 DNA helicase [Replicat 25.3 27 0.00058 43.7 0.5 18 165-182 202-219 (649)
495 TIGR00602 rad24 checkpoint pro 25.3 39 0.00084 43.0 1.8 18 166-183 112-129 (637)
496 cd02023 UMPK Uridine monophosp 25.2 26 0.00057 36.9 0.4 15 167-181 2-16 (198)
497 PF00931 NB-ARC: NB-ARC domain 25.1 51 0.0011 36.4 2.5 30 152-181 5-36 (287)
498 cd07648 F-BAR_FCHO The F-BAR ( 25.1 1E+03 0.022 26.7 16.3 129 932-1076 25-172 (261)
499 cd01983 Fer4_NifH The Fer4_Nif 25.0 29 0.00063 30.9 0.5 14 167-180 2-15 (99)
500 PRK01172 ski2-like helicase; P 24.9 43 0.00093 42.5 2.2 24 153-178 28-51 (674)
No 1
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=9.8e-286 Score=2542.22 Aligned_cols=1076 Identities=45% Similarity=0.667 Sum_probs=954.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeEe
Q 001229 22 KQKSNSKISKSNSENTPPLHPNIVQPQLSPTPPPAKSLTFHSQSQIPRSDTPPENRKKTTRSDTQGEVPEVSDPSVKVVV 101 (1119)
Q Consensus 22 ~~k~~~~~~~~~s~~~~p~~~n~~~~~~~~sp~p~~~~~~~~~s~~~~~~tp~~~~~k~~~s~~~~~~p~~~~~~VkVvV 101 (1119)
+.|+++++.++..+|+||.+||.++..+.|.|+|.++ -.+ ++.| +.+|++++.+++........+...+++|+|+|
T Consensus 29 ~~~~~~~~~~~~~e~~~p~~~n~~~~~~~~~~~~~~~-~~~--sp~p-~~pp~s~~l~rk~~~~~~~en~~~ds~VkV~V 104 (1320)
T PLN03188 29 KSKPSSRKLKSSKENAPPPDLNSLTSDLKPDHRSASA-KLK--SPLP-PRPPSSNPLKRKLSAETAPENGVSDSGVKVIV 104 (1320)
T ss_pred cCCcchhhhccccccCCCCCcccccccccccCCCccc-ccc--CCCC-CCCCCCcchhccccccccccccCCCCCeEEEE
Confidence 4445445566788999999999777543333333221 111 2221 11233444455444433344445678999999
Q ss_pred eeCCCCcccccCCCeEEEeCCCceeecCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 102 RIRPANDLERDSNQTVKKVSSDSLAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 102 RVRP~~~~E~~~~~~v~~~s~~~l~v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
||||++..| .+...+..+.++.+.+.++.|.||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||
T Consensus 105 RVRPl~~~E-~g~~iV~~~s~dsl~I~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 105 RMKPLNKGE-EGEMIVQKMSNDSLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred EcCCCCCcc-CCCeeEEEcCCCeEEEeCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEee
Confidence 999999875 3455667778888889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccCCCcceeeeCCCCCe
Q 001229 182 WGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPKHGF 261 (1119)
Q Consensus 182 ~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~~~~L~IrEd~~~Gv 261 (1119)
+|+............++|||||++++||..|...+.......+.|.|+|||+|||||+|||||++...++.|++|+.+|+
T Consensus 184 ~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv 263 (1320)
T PLN03188 184 WGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGV 263 (1320)
T ss_pred CCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccccCCceEEEcCCCCe
Confidence 99876544444556789999999999999998765444456678999999999999999999999888999999999999
Q ss_pred EecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCccccceeEEecCCCCCC
Q 001229 262 YVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSKTSRICLVDIAGADRN 341 (1119)
Q Consensus 262 ~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~ 341 (1119)
||.||+++.|.|+++++++|..|..+|++++|.+|..|||||+||+|+|++..... ..+......|+|+|||||||||.
T Consensus 264 ~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~-~dg~ss~r~SkLnLVDLAGSER~ 342 (1320)
T PLN03188 264 YVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSV-ADGLSSFKTSRINLVDLAGSERQ 342 (1320)
T ss_pred EeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeeccc-CCCCcceEEEEEEEEECCCchhc
Confidence 99999999999999999999999999999999999999999999999999866542 23334567899999999999999
Q ss_pred CCccccccchHhhhHhhHHHHHHHHHHHHHhhhc-cCCCCCccCCCCcccccccccCCCCceEeEeeecCCCCCcHHHHH
Q 001229 342 KLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQET-LGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEIL 420 (1119)
Q Consensus 342 ~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~-~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~ISPs~~~~eETL 420 (1119)
+.+++.|.+++|+.+||+||++||+||++|++.. .++..||||||||||+||||+|||||+|+|||||||+..+++||+
T Consensus 343 kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETL 422 (1320)
T PLN03188 343 KLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETF 422 (1320)
T ss_pred cccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHH
Confidence 9999999999999999999999999999998754 456789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHHHhcccc------CCcccccchHHHHHHHHH-HhhcccC
Q 001229 421 STIRFGQRVKSIRNDPVINEISEDDVNDLSDQIRQLKEELIRAKSDVH------SGYFKGRNVRESLNQLRV-SLNRSLM 493 (1119)
Q Consensus 421 sTLrFAsRAK~IkN~p~vNe~~~~~v~~L~~~I~~Lk~EL~rlk~~~~------~~~~~~~~~re~l~~lr~-~l~~~~~ 493 (1119)
+||+||+|||.|+|+|++|+...++++.|+.+|++|++||.++|.++. ..|+++|+.|++|+.||+ +|++++.
T Consensus 423 STLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~~~n~~y~t~~~~r~sl~~l~~~~l~~~~~ 502 (1320)
T PLN03188 423 STLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPTNPNVAYSTAWNARRSLNLLKSFGLGPPPS 502 (1320)
T ss_pred HHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccchhHHHHHHHHHhccCCCCcC
Confidence 999999999999999999999988899999999999999999999752 478899999999999997 8999999
Q ss_pred cccCCchhHHhhhcChHHHHH-------------HHHHHHHHHhhhcccCCCCCcCcccccccccccccc----------
Q 001229 494 LPRIDNELEEEVKVDEHDVSE-------------LRQQLAKLQSSYDKSSKDPSENKDSVLCSSVEEFHD---------- 550 (1119)
Q Consensus 494 l~~~~~~~~ee~~~~e~~i~e-------------L~~Qi~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~---------- 550 (1119)
+|++++|.+++|+++|+.|+. +++|++.++.+.++..+|++.++++..+..++....
T Consensus 503 lp~i~~d~~~~m~ide~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (1320)
T PLN03188 503 LPHVDEDGDEEMEIDEEAVERLCVQVGLQPAGAAEGNNVDMGRVESIHSSDQQSIIKQGSEDTDVDMEEAISEQEEKHEI 582 (1320)
T ss_pred CCccccccchhhhcchhHHHHHHHHhcccchhHHHHHHHhhhcccccccccchhhhcccccccchhhhhhhccccccccc
Confidence 999999999999999988877 566778888888888888876655554433211100
Q ss_pred -------------------------------------ccc----------------ccCCCCCCCCcCcccccCCCCCCC
Q 001229 551 -------------------------------------ADL----------------ISEDDIECPEENDLEEIDLPPKEN 577 (1119)
Q Consensus 551 -------------------------------------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1119)
... .+|....+ ..++.++++..+..+
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 661 (1320)
T PLN03188 583 TIVDCAEPVRNTQNSLQIDTLDHESSEQPLEEKNALHSSVSKLNTEESPSKMVEIRPSCQDSVS-ESGVSTGVSVADESN 661 (1320)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccCCccccccc-ccccccccccccccc
Confidence 000 01111122 345566666666666
Q ss_pred CCCCCCcccccccCCCCCCccCCCcceeccccCCCCCCCCCCcCCccccccccccccccC-CCCCCCcccccccchh---
Q 001229 578 STPSSDDLSSTLNTSRPINHAFRDSISISSCRQSPVLQDPTFSESPKIGNILRKSLAISS-PLASQTDMSQSSKSDV--- 653 (1119)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~~~~~~~~~p~~~~sp~~~~~~rks~~~s~-~~~~~~~~~~~~~~~~--- 653 (1119)
+.+ ..++ +++++++|||+||++||+|++||+|+||+|+| .|||+++|+ +++++.|+...+...+
T Consensus 662 ~~~-----~~~~------~~~~~~~lsi~p~~~~~~l~~p~~s~sp~~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1320)
T PLN03188 662 DSE-----NELV------NCASPSSLSIVPVEVSPVLKSPTLSVSPRIRN-SRKSLRTSSMLTASQKDSEDESKLTPEDA 729 (1320)
T ss_pred ccc-----cccc------cCCCccccccccccccccccCCccccCCCccc-chhhhhhhcccccccchhccccccccccc
Confidence 555 2344 78899999999999999999999999999999 999999999 9999988876554432
Q ss_pred ---hhhhhhhhhhhhhcccccCCCCCchhhHHHHHhhccceeccccCCCcCccccccccccccccCCCcccccccccccc
Q 001229 654 ---LRQSLKQSEHIRSSLRSSKIFPGAAESLAASLQRGLQIIDSHQRSSASNRSSVAFSFEHLTLKPCSEVDKTNASVQT 730 (1119)
Q Consensus 654 ---~~~~~~~~~~~~~~~~~~~~~~~~t~~laasl~rgl~iid~h~~~~~~~~s~~~~s~~~~~~~p~~~~~k~~~~~q~ 730 (1119)
..++++.+.++++|+|+||+||+||++||||||||||||||||+|+|||||||+|||+|++++||..|+||||||||
T Consensus 730 ~~~~~~~~~~~~~~~~~~~~~k~~~~~t~~laasl~rgl~ii~~h~~~~~~~rss~~~s~~~~~~~~~~~~~k~~~~vq~ 809 (1320)
T PLN03188 730 EPSFAKSMKNNSSSALSTQKSKSFLAPTEHLAASLHRGLEIIDSHRQSSALRRSSFRFSFKPADSKPITLVSKADVGVQT 809 (1320)
T ss_pred ccchhhhhhcccccccccccccccCCchHHHHHHHhcchHHHhhcccCchhhccceecccccccccccccccccchhhhc
Confidence 23677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC------C-ccccchhhhhhhccCcccccccccceeeeccCCCCC---------------chhhhhHHHHHhHhHHH
Q 001229 731 NIEE------R-DLPLCASCRQKMENNTNEVQDSLKTWIVARDAENDS---------------AEPIKKENELENICTEQ 788 (1119)
Q Consensus 731 ~~~~------~-~~~lc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~re~~le~~c~~q 788 (1119)
+|++ + ..+||++||++++++.+++.|+.++|+||+||++++ ||||||||+||+||+||
T Consensus 810 ~~~~~~~~~~~~~~~lc~~c~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~k~~~kvl~~a~~re~~le~~c~~q 889 (1320)
T PLN03188 810 LPQADEISEENSKEFLCSNCKCRTQLDAKDADDSSNLQLVPVDGSESAEKSKKQVPKAVEKVLAGAIRREMALEEFCTKQ 889 (1320)
T ss_pred ccccccccccccchhcccccccccccccccccccccceeeeccCcccccchhhhhhhHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9997 1 699999999999999999998889999999999888 79999999999999999
Q ss_pred HHHHHhhhhh--------------------------------------------------------------------hh
Q 001229 789 AAKIEQLNRL--------------------------------------------------------------------EV 800 (1119)
Q Consensus 789 a~~i~ql~~l--------------------------------------------------------------------e~ 800 (1119)
|++|+||||| ||
T Consensus 890 a~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y~~~p~~~~~~~e~ 969 (1320)
T PLN03188 890 ASEITQLNRLVQQYKHERECNAIIGQTREDKIIRLESLMDGVLSKEDFLEEELASLMHEHKLLKEKYENHPEVLRTKIEL 969 (1320)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHHhhhcccccchhhhhhhhhhhhhhhHHHHHHHhhcChhhhhhhHHH
Confidence 9999999999 58
Q ss_pred hcccccccc-cccccchhHHHHHHHHHHHHhhcccc-CCCCcccccccchhhhhhhh------hhhccccC-CCCchHHH
Q 001229 801 QEVPSHQNG-NISFEMNEKEVLLKEIESLRTKLQYT-DASPFKSTENLRSSLLSRSI------QLRKSIEA-RPNTAEEL 871 (1119)
Q Consensus 801 ~~~~~~~~~-~~~~~~~e~e~l~~ei~~l~~~l~~~-~~~~~~~~~~~~~~~l~~~~------~~~~~~~~-~~~~~~~~ 871 (1119)
|++|||+++ +|||||+||||||+|||+||+||||| |+|.+++++.|++++|+|.+ ++++|++. +++.+++|
T Consensus 970 ~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~~l 1049 (1320)
T PLN03188 970 KRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEKKL 1049 (1320)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccchhHHH
Confidence 999999999 99999999999999999999999999 99999999999999999999 48889988 77889999
Q ss_pred HHHHhhhhhhcccceehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001229 872 EKERERWTEMESEWICLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSR 951 (1119)
Q Consensus 872 ~~er~~w~e~es~wi~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~ 951 (1119)
++||++||||||+||+||||||+|||++|+||||+++||+.||+|+|||+|||||||+|||||||||||||||||+||+|
T Consensus 1050 ~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~ 1129 (1320)
T PLN03188 1050 EQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLAR 1129 (1320)
T ss_pred HHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhH
Q 001229 952 HRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEA 1031 (1119)
Q Consensus 952 hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~ea 1031 (1119)
||+|||||+|||||||||||||||+|||||||||||||||||||||+|||||||+||+||||||||||||||||||||||
T Consensus 1130 hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~ea 1209 (1320)
T PLN03188 1130 HRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEA 1209 (1320)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCcccccCccccCcccccccCC---CCchHHHH
Q 001229 1032 EQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAESKLPESALQPLYREDSDVAHSSAI---LDDDQAWR 1108 (1119)
Q Consensus 1032 eea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~laes~lp~~~~~~~~~~~~~~~~~~~~---~~~~~~wr 1108 (1119)
|||+++||+|||+|||||+|||||||||||||+|||+||||||||||||.++|+|+|+++. |++||.+ +.+||+||
T Consensus 1210 eea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~aes~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~wr 1288 (1320)
T PLN03188 1210 EEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAESRLPKEAIRPACNDDC-MAKYDAGEPLSEGDQQWR 1288 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCccccccc-cccccccCCCCcchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999966 8889844 68999999
Q ss_pred HHhhhhhcC
Q 001229 1109 AEFGAIYQD 1117 (1119)
Q Consensus 1109 ~~f~~~~~~ 1117 (1119)
+||+|||+.
T Consensus 1289 ~ef~~~y~~ 1297 (1320)
T PLN03188 1289 EEFEPFYKK 1297 (1320)
T ss_pred HHHhhhhcc
Confidence 999999984
No 2
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=100.00 E-value=9.2e-164 Score=1358.49 Aligned_cols=403 Identities=64% Similarity=0.885 Sum_probs=382.8
Q ss_pred CchhhHHHHHhhccceeccccCCCcCccccccccccccccCCCcccccccccccccccC----CccccchhhhhhhccCc
Q 001229 676 GAAESLAASLQRGLQIIDSHQRSSASNRSSVAFSFEHLTLKPCSEVDKTNASVQTNIEE----RDLPLCASCRQKMENNT 751 (1119)
Q Consensus 676 ~~t~~laasl~rgl~iid~h~~~~~~~~s~~~~s~~~~~~~p~~~~~k~~~~~q~~~~~----~~~~lc~~c~~~~~~~~ 751 (1119)
+||+|||||||||||||||||+|+|||||||||||+|++++||.+|+||||+|||+|++ +++|||++||+++++++
T Consensus 1 spTeSLAASLqRGLqIIDyHq~NsA~rrSSvsfSf~~l~l~P~~~v~KvDv~vQT~pe~~~~~~a~llC~sCk~~~~~~~ 80 (488)
T PF06548_consen 1 SPTESLAASLQRGLQIIDYHQQNSALRRSSVSFSFRHLALKPCQPVDKVDVAVQTLPEDNESRDASLLCSSCKKKIQDDD 80 (488)
T ss_pred CcchHHHHHHhcCchhhhccccCccccccccccccCCccCCCcchhhhccHHhhcCccccccccchhhhhhhcchhhcch
Confidence 58999999999999999999999999999999999999999999999999999999998 28999999999998887
Q ss_pred c--cccccccceeeeccCCCCC-----chhhhhHHHHHhHhHHHHHHHHhhhhh--------------------------
Q 001229 752 N--EVQDSLKTWIVARDAENDS-----AEPIKKENELENICTEQAAKIEQLNRL-------------------------- 798 (1119)
Q Consensus 752 ~--~~~~~~~~~~~~~~~~~~~-----~~~~~re~~le~~c~~qa~~i~ql~~l-------------------------- 798 (1119)
+ +..++.++|+||+|++.-. +|+|||||+||+||+|||++|+|||||
T Consensus 81 ~~~e~~~~~~lqLv~~d~~~KavekVlagaIrREmeLEe~C~eQAakIeQLNrLVqQyK~ErE~naiI~Q~re~k~~rle 160 (488)
T PF06548_consen 81 NSKENDNSSKLQLVPADGSEKAVEKVLAGAIRREMELEEVCAEQAAKIEQLNRLVQQYKHERECNAIIAQTREDKILRLE 160 (488)
T ss_pred hhccccccccceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHhhhhHHHHHH
Confidence 4 3444459999999998543 999999999999999999999999999
Q ss_pred ------------------------------------------hhhcccccccc-ccc-ccchhHHHHHHHHHHHHhhccc
Q 001229 799 ------------------------------------------EVQEVPSHQNG-NIS-FEMNEKEVLLKEIESLRTKLQY 834 (1119)
Q Consensus 799 ------------------------------------------e~~~~~~~~~~-~~~-~~~~e~e~l~~ei~~l~~~l~~ 834 (1119)
|+|+|||||+. +|| |||+||||||+|||+||+||||
T Consensus 161 slmdg~l~~~e~~~ee~~sl~~e~KlLk~~~en~pevl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~~ 240 (488)
T PF06548_consen 161 SLMDGVLPTEEFIDEEYVSLMHEHKLLKEKYENHPEVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQY 240 (488)
T ss_pred HhhccccchHHHhhhHhhhhhhHhhhhhhhccCchHHHhhHhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHHh
Confidence 58999999997 666 9999999999999999999999
Q ss_pred c-CCCCcccccccchhhhhhhhhhhc--cccC-CCCchHHHHHHHhhhhhhcccceehhhhhhhhHHHhhHHHHHHHHHH
Q 001229 835 T-DASPFKSTENLRSSLLSRSIQLRK--SIEA-RPNTAEELEKERERWTEMESEWICLTDELRVDIESSRRHAERVESEL 910 (1119)
Q Consensus 835 ~-~~~~~~~~~~~~~~~l~~~~~~~~--~~~~-~~~~~~~~~~er~~w~e~es~wi~lt~elr~~le~~r~~~ek~~~el 910 (1119)
| |+|. ++.++|+++|.+++|+++ ++.. .+|.+++|++||+|||||||+|||||||||+|||++|+||||+++||
T Consensus 241 ~~~ss~--s~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL 318 (488)
T PF06548_consen 241 YTDSSM--STDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMEL 318 (488)
T ss_pred cccccc--ccccccccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 6444 344578888999999888 4444 78899999999999999999999999999999999999999999999
Q ss_pred hHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhh
Q 001229 911 RLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALR 990 (1119)
Q Consensus 911 ~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr 990 (1119)
++||||+|||+|||||||+|||||||||||||||||+|++|||+||+||+|||||||||||||||+||||||||||||||
T Consensus 319 ~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr 398 (488)
T PF06548_consen 319 DSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALR 398 (488)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001229 991 VERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITM 1070 (1119)
Q Consensus 991 ~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~ 1070 (1119)
+||||||+|||||||+||+|||||||||||||||||||||||||+++||+||++|||||+|||||||||||||+|||+||
T Consensus 399 ~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~ 478 (488)
T PF06548_consen 399 AEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTM 478 (488)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCC
Q 001229 1071 KQYLAESKLP 1080 (1119)
Q Consensus 1071 ~~~laes~lp 1080 (1119)
||||||||||
T Consensus 479 kq~laes~lp 488 (488)
T PF06548_consen 479 KQYLAESRLP 488 (488)
T ss_pred HHHHhhccCC
Confidence 9999999999
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-90 Score=808.35 Aligned_cols=354 Identities=44% Similarity=0.701 Sum_probs=316.8
Q ss_pred CCCceeEeeeCCCCcccccCC-CeEE---------Ee--CCCceeecCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHc
Q 001229 94 DPSVKVVVRIRPANDLERDSN-QTVK---------KV--SSDSLAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALA 161 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~E~~~~-~~v~---------~~--s~~~l~v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~ 161 (1119)
..+|+|+||+||++..+.... ..+. .+ +.......++.|+||+||+++++|++||+.++.|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 457999999999988653221 1111 11 11112224578999999999999999999999999999999
Q ss_pred CCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccc
Q 001229 162 GYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIG 241 (1119)
Q Consensus 162 GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~ 241 (1119)
||||||||||||||||||||+|+. ....|||||+|.+||.+|+..++.. .|.|+|||+|||||.|+
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~---------~~~~GiiPraf~~LF~~I~~~~~~~-----~f~vrvS~lEiYnE~i~ 149 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPD---------PELRGLIPRAFEHLFRHIDERKEKT-----RFLVRVSYLEIYNESIR 149 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCC---------hhhCCchhHHHHHHHHHHHhccccc-----eEEEEeehHHHHhHHHH
Confidence 999999999999999999999972 3689999999999999999875432 69999999999999999
Q ss_pred cccccCC-CcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCC
Q 001229 242 DLLDQTQ-RNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSK 320 (1119)
Q Consensus 242 DLL~~~~-~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~ 320 (1119)
|||++.. +.|.|+++|+.|+||+||+++.|.|+++++++|..|+++|++++|.||..|||||+||||+|++. ....+
T Consensus 150 DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~--~~~~~ 227 (574)
T KOG4280|consen 150 DLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESS--EKSDG 227 (574)
T ss_pred HHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEee--cccCC
Confidence 9999877 58999999999999999999999999999999999999999999999999999999999999982 22345
Q ss_pred cccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCC
Q 001229 321 CFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGN 400 (1119)
Q Consensus 321 ~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGN 400 (1119)
+....++|||+|||||||||..++++.|+|++|+.+||+||++||+||.+|++. +..||||||||||+|||||||||
T Consensus 228 ~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~---~~~HIPYRdSkLT~LLqdSLGGN 304 (574)
T KOG4280|consen 228 GLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDG---SKTHIPYRDSKLTRLLQDSLGGN 304 (574)
T ss_pred CccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcc---ccCCCCcchhHHHHHHHHHcCCC
Confidence 667789999999999999999999999999999999999999999999999983 44599999999999999999999
Q ss_pred ceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccccccH-HHHHHHHHHHHHHHHHHHHHhcc
Q 001229 401 AKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISE-DDVNDLSDQIRQLKEELIRAKSD 466 (1119)
Q Consensus 401 SkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~-~~v~~L~~~I~~Lk~EL~rlk~~ 466 (1119)
|+|+|||||+|+..+++||++|||||+|||.|+|+|+||+++. ..+..|+.+|+.|+.+|......
T Consensus 305 ~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~~ 371 (574)
T KOG4280|consen 305 SKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPGGSP 371 (574)
T ss_pred ceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccccCc
Confidence 9999999999999999999999999999999999999999998 66889999999999999776554
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-90 Score=817.69 Aligned_cols=357 Identities=39% Similarity=0.632 Sum_probs=322.6
Q ss_pred CCCceeEeeeCCCCcccccC-CCeEEEeCCCceee-------cCeeEEcCeecCCC-------CChHHHHHHhhHHHHHH
Q 001229 94 DPSVKVVVRIRPANDLERDS-NQTVKKVSSDSLAV-------GERKFAFDSVLDSN-------SNQEDIFQVVGLPLVKN 158 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~E~~~-~~~v~~~s~~~l~v-------~~k~F~FD~VFd~~-------asQeeVY~~v~~pLV~~ 158 (1119)
..+|+|.|||||++..|... ..+|+.+.++...+ ....|+||++||.. ++|..||+.++.|||++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 45799999999999998544 35666676665543 12469999999764 78999999999999999
Q ss_pred HHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeecc
Q 001229 159 ALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNE 238 (1119)
Q Consensus 159 vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE 238 (1119)
+|+|||+||||||||||||||||+|.. +.+++|||||+|++||.+|...+. .++.|.|.|||+|||||
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~--------~~~e~GIIPrlCEeLF~ri~~nq~----~~~sy~VevSymEIYcE 150 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQ--------EPDEPGIIPRLCEELFSRIADNQS----QQMSYSVEVSYMEIYCE 150 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccC--------CCCCCCchhHHHHHHHHHHhhccc----ccceEEEEEeehhHHHH
Confidence 999999999999999999999999976 236899999999999999987543 46899999999999999
Q ss_pred ccccccc-c-CCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecc
Q 001229 239 QIGDLLD-Q-TQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKE 316 (1119)
Q Consensus 239 ~I~DLL~-~-~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~ 316 (1119)
+|+|||+ + .+.+|+|||+|..|+||++|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||||++.|....
T Consensus 151 rVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~ 230 (1221)
T KOG0245|consen 151 RVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHD 230 (1221)
T ss_pred HHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeecc
Confidence 9999998 4 4568999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhcc---CCCCCccCCCCcccccc
Q 001229 317 ASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETL---GKSEDVIYRCSCLTHLL 393 (1119)
Q Consensus 317 ~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~---~k~~hVPYRDSKLTrLL 393 (1119)
. ..+..+.++|+|+|||||||||+..+|+.|+|+|||.+|||||.+||+||.||++... ++..+||||||.|||||
T Consensus 231 ~-~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLL 309 (1221)
T KOG0245|consen 231 Q-DTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLL 309 (1221)
T ss_pred c-cCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHH
Confidence 3 3445678899999999999999999999999999999999999999999999999774 45569999999999999
Q ss_pred cccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHHHhccccC
Q 001229 394 RESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISEDDVNDLSDQIRQLKEELIRAKSDVHS 469 (1119)
Q Consensus 394 qDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~~~v~~L~~~I~~Lk~EL~rlk~~~~~ 469 (1119)
+++|||||||+|||+|||++.||+|||+|||||.|||.|+|+++|||++... .||+|++|+.|||+.++.
T Consensus 310 kEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK------LIRELreEv~rLksll~~ 379 (1221)
T KOG0245|consen 310 KENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK------LIRELREEVARLKSLLRA 379 (1221)
T ss_pred HHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH------HHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998763 589999999998886543
No 5
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.6e-87 Score=803.93 Aligned_cols=360 Identities=36% Similarity=0.592 Sum_probs=311.7
Q ss_pred CCCCCCCCceeEeeeCCCCcccccCC-CeEEEeCC--Cceee--------cCeeEEcCeecCCCCChHHHHHHhhHHHHH
Q 001229 89 VPEVSDPSVKVVVRIRPANDLERDSN-QTVKKVSS--DSLAV--------GERKFAFDSVLDSNSNQEDIFQVVGLPLVK 157 (1119)
Q Consensus 89 ~p~~~~~~VkVvVRVRP~~~~E~~~~-~~v~~~s~--~~l~v--------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~ 157 (1119)
.+...+.+|+|+|||||+++.|.... ..|+.+++ ..+.+ -.++|+||+||+|.+.|.+||+.++.|+|.
T Consensus 43 ~~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~ 122 (1041)
T KOG0243|consen 43 DHKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIK 122 (1041)
T ss_pred CCCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHH
Confidence 34455778999999999999986544 33433333 11221 257899999999999999999999999999
Q ss_pred HHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeec
Q 001229 158 NALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYN 237 (1119)
Q Consensus 158 ~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYN 237 (1119)
.|+.|||||||||||||+||||||.|..... +...+...|||||++.+||+.+... +..|+|+|||+|+||
T Consensus 123 eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~--~g~l~~~aGIIPRal~~IFd~Le~~-------~~EYsvKVSfLELYN 193 (1041)
T KOG0243|consen 123 EVLEGYNCTIFAYGQTGTGKTYTMEGGERKK--NGELPSEAGIIPRALRQIFDTLEAQ-------GAEYSVKVSFLELYN 193 (1041)
T ss_pred HHhccCCceEEEecCCCCCceeeeecCcccc--cCCCCccCCcchHHHHHHHHHHHhc-------CCeEEEEEEehhhhh
Confidence 9999999999999999999999999964322 2334578999999999999999764 247999999999999
Q ss_pred cccccccccCC---CcceeeeCC-----CCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEE
Q 001229 238 EQIGDLLDQTQ---RNLEIKDDP-----KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFI 309 (1119)
Q Consensus 238 E~I~DLL~~~~---~~L~IrEd~-----~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~ 309 (1119)
|.|+|||++.. ..+.+.+++ ++|++|.||.++.|.++.|++.+|.+|...|++++|.||..|||||+||+|+
T Consensus 194 EEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsIt 273 (1041)
T KOG0243|consen 194 EELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSIT 273 (1041)
T ss_pred HHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEE
Confidence 99999998654 345666655 6799999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcc
Q 001229 310 VESWCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCL 389 (1119)
Q Consensus 310 Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKL 389 (1119)
|.-.... ..|..-.+.|||+||||||||-..++|+.+.|.+|++.||+||++||+||+||++ +..|||||+|||
T Consensus 274 vhike~t--~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe----~s~HIPYRESKL 347 (1041)
T KOG0243|consen 274 VHIKENT--PEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVE----HSGHIPYRESKL 347 (1041)
T ss_pred EEEecCC--CcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHc----cCCCCCchHHHH
Confidence 9754433 3444567899999999999999999999999999999999999999999999997 668999999999
Q ss_pred cccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccccccHHH--HHHHHHHHHHHHHHHHHH
Q 001229 390 THLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISEDD--VNDLSDQIRQLKEELIRA 463 (1119)
Q Consensus 390 TrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~~~--v~~L~~~I~~Lk~EL~rl 463 (1119)
||||||||||.+||+|||||||+..+++|||+||.||.|||.|+|+|.+|.....+ +.+|-.+|..||.+|.-+
T Consensus 348 TRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~Aa 423 (1041)
T KOG0243|consen 348 TRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAA 423 (1041)
T ss_pred HHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999754433 577788888888888433
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=8.5e-83 Score=726.82 Aligned_cols=330 Identities=35% Similarity=0.606 Sum_probs=299.2
Q ss_pred CCCCceeEeeeCCCCcccccCCC-eEEEeC--CCceeecC----eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCc
Q 001229 93 SDPSVKVVVRIRPANDLERDSNQ-TVKKVS--SDSLAVGE----RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNV 165 (1119)
Q Consensus 93 ~~~~VkVvVRVRP~~~~E~~~~~-~v~~~s--~~~l~v~~----k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~ 165 (1119)
..++|+|+||+||.+..|...+. .+.... .+.+.+.. ..|.||+||.|+++|++||..++.|+|++||.||||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG 84 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG 84 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence 35789999999999988754332 222221 23344433 899999999999999999999999999999999999
Q ss_pred ceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccc
Q 001229 166 SLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD 245 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~ 245 (1119)
||||||||||||||||.|... +....|||||++++||.+|..... ...|.|+|||||||+|+|+|||+
T Consensus 85 TvfaYGqT~sGKTytm~G~~~-------d~~~~GIipRi~~diF~~Iys~~~-----n~efhVkVsy~EIYmEKi~DLL~ 152 (607)
T KOG0240|consen 85 TVFAYGQTGSGKTYTMEGIGH-------DPEEMGIIPRILNDIFDHIYSMEE-----NLEFHVKVSYFEIYMEKIRDLLD 152 (607)
T ss_pred eEEEecCCCCCcceeecccCC-------ChhhcCcHHHHHHHHHHHHhcCcc-----cceEEEEEEeehhhhhHHHHHhC
Confidence 999999999999999999763 225679999999999999986543 36899999999999999999999
Q ss_pred cCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCc
Q 001229 246 QTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSS 325 (1119)
Q Consensus 246 ~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~ 325 (1119)
+.+.++.+++|.+.++||+|+++..|.++++++++++.|..+|+++.|+||.+|||||.||+|+|+|.+.+. ...
T Consensus 153 ~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~-----~~~ 227 (607)
T KOG0240|consen 153 PEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED-----KRK 227 (607)
T ss_pred cccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc-----hhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999977654 235
Q ss_pred cccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeE
Q 001229 326 KTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTV 405 (1119)
Q Consensus 326 ~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~m 405 (1119)
..|+|+||||||||+++++|+.|..+.|+++||+||++||+||++|++ |...|||||||||||||||+|||||||+|
T Consensus 228 ~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~---g~~shipYRDSKLTRILqdSLGGNsRTtl 304 (607)
T KOG0240|consen 228 LSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAE---GPKSHIPYRDSKLTRILQDSLGGNSRTTL 304 (607)
T ss_pred ccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhc---CCCCCCcchhhHHHHHHHHHhCCCcceEE
Confidence 689999999999999999999999999999999999999999999998 55789999999999999999999999999
Q ss_pred eeecCCCCCcHHHHHHHHHHHHHhccccccccccccc
Q 001229 406 VCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEIS 442 (1119)
Q Consensus 406 Ia~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~ 442 (1119)
|+|++|+..+..||.+||+|++|||.|+|.+.+|+.-
T Consensus 305 Ii~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~ 341 (607)
T KOG0240|consen 305 IICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLEL 341 (607)
T ss_pred EEecCCccccccccccchhhccccccccchhhhhhHh
Confidence 9999999999999999999999999999999999754
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=4.9e-80 Score=694.63 Aligned_cols=332 Identities=59% Similarity=0.901 Sum_probs=293.4
Q ss_pred CCceeEeeeCCCCcccccCC--CeEEEeCCCceeec---CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceee
Q 001229 95 PSVKVVVRIRPANDLERDSN--QTVKKVSSDSLAVG---ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLS 169 (1119)
Q Consensus 95 ~~VkVvVRVRP~~~~E~~~~--~~v~~~s~~~l~v~---~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfA 169 (1119)
.+|+|+|||||+...|.+.. .++....++.+.+. .+.|.||+||+++++|++||+.++.|+|+++++|||+||||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~a 80 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFA 80 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEE
Confidence 36999999999998875432 34444444443332 47999999999999999999999999999999999999999
Q ss_pred eccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccCCC
Q 001229 170 YGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQR 249 (1119)
Q Consensus 170 YGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~~~ 249 (1119)
||||||||||||+|+.... .......+|||||++++||..+....+.. .....|.|+|||+|||||+|||||++...
T Consensus 81 YGqTGSGKTyTm~G~~~~~--~~~~~~~~Giipr~~~~Lf~~i~~~~~~~-~~~~~~~v~~S~~EIyne~v~DLL~~~~~ 157 (337)
T cd01373 81 YGQTGSGKTYTMMGPSSSD--DESPHGLQGVIPRIFEYLFSLIQREEEKR-GDGLKFLCKCSFLEIYNEQITDLLDPTSR 157 (337)
T ss_pred eCCCCCCceEEecCCCCcc--ccccccCCCHHHHHHHHHHHHHHhhhhhc-ccCceEEEEEEEEeecCCEeeeCCCCCCC
Confidence 9999999999999976421 11234678999999999999998654432 24568999999999999999999998888
Q ss_pred cceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCccccc
Q 001229 250 NLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSKTSR 329 (1119)
Q Consensus 250 ~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~Sr 329 (1119)
.+.+++++.+|++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+...... ......|+
T Consensus 158 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~---~~~~~~s~ 234 (337)
T cd01373 158 NLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS---STNIRTSR 234 (337)
T ss_pred CceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC---CCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999987654321 12346799
Q ss_pred eeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEeeec
Q 001229 330 ICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNI 409 (1119)
Q Consensus 330 L~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~I 409 (1119)
|+|||||||||...+++.|.+++|+.+||+||++||+||.+|++...++..||||||||||+||||+|||||+|+|||||
T Consensus 235 l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~v 314 (337)
T cd01373 235 LNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANV 314 (337)
T ss_pred EEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999997665668899999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhccc
Q 001229 410 SPDNKDVGEILSTIRFGQRVKSI 432 (1119)
Q Consensus 410 SPs~~~~eETLsTLrFAsRAK~I 432 (1119)
||+..+++||++||+||+|||.|
T Consensus 315 sP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 315 SPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999987
No 8
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-80 Score=722.64 Aligned_cols=410 Identities=36% Similarity=0.588 Sum_probs=343.4
Q ss_pred CCCCceeEeeeCCCCcccccCC----------CeEEEeCCCcee----ecCeeEEcCeecCCC-------CChHHHHHHh
Q 001229 93 SDPSVKVVVRIRPANDLERDSN----------QTVKKVSSDSLA----VGERKFAFDSVLDSN-------SNQEDIFQVV 151 (1119)
Q Consensus 93 ~~~~VkVvVRVRP~~~~E~~~~----------~~v~~~s~~~l~----v~~k~F~FD~VFd~~-------asQeeVY~~v 151 (1119)
++.+|||+|||||++.+|.+.. .++....+.... -++++|.||++|++. +.|+.||+.+
T Consensus 2 s~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l 81 (1714)
T KOG0241|consen 2 SDAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL 81 (1714)
T ss_pred CCcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence 4678999999999998875433 222222221111 246899999999764 7899999999
Q ss_pred hHHHHHHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEE
Q 001229 152 GLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCS 231 (1119)
Q Consensus 152 ~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vS 231 (1119)
+..+|+++|+|||+||||||||||||||||+|.. .++|||||++..||.+|.... .....|.|.||
T Consensus 82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~----------~QpGiIPrlc~~lFe~I~k~~----n~~~tfkVeVS 147 (1714)
T KOG0241|consen 82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMGTA----------EQPGIIPRLCESLFERIDKES----NPSQTFKVEVS 147 (1714)
T ss_pred chHHHHHHhhccceeeEEecccCCCceeEeeccC----------CCCCchhHHHHHHHHHHHhcc----CCCceEEEEEE
Confidence 9999999999999999999999999999999987 579999999999999998765 24567999999
Q ss_pred EEeeeccccccccccC--CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEE
Q 001229 232 FLEIYNEQIGDLLDQT--QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFI 309 (1119)
Q Consensus 232 ylEIYNE~I~DLL~~~--~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~ 309 (1119)
|+|||||++||||+|. ...|+++++...|+||.||++..|.|++|+-.+|..|+++|++++|+||..|||||+||.|.
T Consensus 148 ymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslv 227 (1714)
T KOG0241|consen 148 YMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLV 227 (1714)
T ss_pred HHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEE
Confidence 9999999999999875 45799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhcc--CCCCCccCCCC
Q 001229 310 VESWCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETL--GKSEDVIYRCS 387 (1119)
Q Consensus 310 Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~--~k~~hVPYRDS 387 (1119)
|.|.-.+ ...+.+..+.|||.|||||||||+.++++.|.|++||.+||+||.+||.||.+|++.+. |+.++||||||
T Consensus 228 vtQ~l~D-~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDS 306 (1714)
T KOG0241|consen 228 VTQTLYD-LKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDS 306 (1714)
T ss_pred EeeEEec-cccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhH
Confidence 9987665 34556677899999999999999999999999999999999999999999999998774 45789999999
Q ss_pred cccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHHHhccc
Q 001229 388 CLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISEDDVNDLSDQIRQLKEELIRAKSDV 467 (1119)
Q Consensus 388 KLTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~~~v~~L~~~I~~Lk~EL~rlk~~~ 467 (1119)
.|||||||+|||||+|+||+||||+.++|+|||+|||||.|||+|+|.++||+++...+ |++|++|+..+...+
T Consensus 307 VLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarv------irElReEve~lr~qL 380 (1714)
T KOG0241|consen 307 VLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARV------IRELREEVEKLREQL 380 (1714)
T ss_pred HHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHH------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987643 445555554444433
Q ss_pred cC-CcccccchHHHHHHHHHHhhcccCcccCCchhHHhhhcChHHHHHHHHHHHHHHhhhccc
Q 001229 468 HS-GYFKGRNVRESLNQLRVSLNRSLMLPRIDNELEEEVKVDEHDVSELRQQLAKLQSSYDKS 529 (1119)
Q Consensus 468 ~~-~~~~~~~~re~l~~lr~~l~~~~~l~~~~~~~~ee~~~~e~~i~eL~~Qi~~l~~~~e~~ 529 (1119)
.. ...+...+++.+.++...+ ..+.++-+|.+...|+...++++|+..+--.++..
T Consensus 381 ~~ae~~~~~el~e~l~esekli------~ei~~twEEkl~ktE~in~erq~~L~~~gis~~~s 437 (1714)
T KOG0241|consen 381 EQAEAMKLPELKEKLEESEKLI------KEITVTWEEKLRKTEEINQERQAQLESMGISLENS 437 (1714)
T ss_pred hhhhhccchHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 1112223444443322111 12344567888889999999999998877766544
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-80 Score=744.01 Aligned_cols=349 Identities=36% Similarity=0.609 Sum_probs=309.0
Q ss_pred CCCceeEeeeCCCCccccc-CCCeEEEeCCCce-e----------ecCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHc
Q 001229 94 DPSVKVVVRIRPANDLERD-SNQTVKKVSSDSL-A----------VGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALA 161 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~E~~-~~~~v~~~s~~~l-~----------v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~ 161 (1119)
..+|.|+|||||++..+.. +.........+.. . .....|.||+||+++++|++||+..++|||.+|+.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 4579999999999987321 1111111111111 0 01478999999999999999999999999999999
Q ss_pred CCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccc
Q 001229 162 GYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIG 241 (1119)
Q Consensus 162 GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~ 241 (1119)
|||+||||||||||||||||.|.. .+|||||+++.+||+.|.... ...|.|+|||+|||||.|+
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~----------~~PGii~la~~dif~~I~~~~------~r~f~v~vSYlEIYNE~I~ 148 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSE----------DDPGIIPLAMKDIFEKIDKSG------EREFSVRVSYLEIYNERIR 148 (675)
T ss_pred CcccceeeecCCCCCCceEEeccC----------CCCCeeehHHHHHHHHHHhcC------CceeEEEEEEEEEeccccc
Confidence 999999999999999999999976 579999999999999998754 3469999999999999999
Q ss_pred cccccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCc
Q 001229 242 DLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKC 321 (1119)
Q Consensus 242 DLL~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~ 321 (1119)
|||++...+|.|++|+.+|++|.||+++.|.|.++++.+|..|..+|+++.|.+|..|||||+||+|.|.+......
T Consensus 149 DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~--- 225 (675)
T KOG0242|consen 149 DLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS--- 225 (675)
T ss_pred cccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred ccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCc
Q 001229 322 FSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNA 401 (1119)
Q Consensus 322 ~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNS 401 (1119)
. +.++|+|||||||||+.++++.|.|++||.+||+||++||+||++|++.. ...||||||||||||||++|||||
T Consensus 226 --~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~--~~~hipYRDSKLTRiLq~sLgGn~ 300 (675)
T KOG0242|consen 226 --S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGK--RPRHIPYRDSKLTRLLQDSLGGNA 300 (675)
T ss_pred --c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHcccc--ccCCCCccccHHHHhchhhcCCCc
Confidence 1 78999999999999999999999999999999999999999999999743 345999999999999999999999
Q ss_pred eEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccccccHHH--HHHHHHHHHHHHHHHHHHhcc
Q 001229 402 KLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISEDD--VNDLSDQIRQLKEELIRAKSD 466 (1119)
Q Consensus 402 kT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~~~--v~~L~~~I~~Lk~EL~rlk~~ 466 (1119)
+|+|||||+|+..+++||.+||+||+|||.|++++.+|++..+. +..++++|..|+.++.+++..
T Consensus 301 rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~ 367 (675)
T KOG0242|consen 301 RTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKK 367 (675)
T ss_pred cEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999765432 455578888999998877654
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=5.8e-78 Score=678.03 Aligned_cols=319 Identities=37% Similarity=0.605 Sum_probs=285.0
Q ss_pred CceeEeeeCCCCcccccCC-C-eEEEeCCCcee-----------------ecCeeEEcCeecCCCCChHHHHHHhhHHHH
Q 001229 96 SVKVVVRIRPANDLERDSN-Q-TVKKVSSDSLA-----------------VGERKFAFDSVLDSNSNQEDIFQVVGLPLV 156 (1119)
Q Consensus 96 ~VkVvVRVRP~~~~E~~~~-~-~v~~~s~~~l~-----------------v~~k~F~FD~VFd~~asQeeVY~~v~~pLV 156 (1119)
+|+|+|||||++..|...+ . ++...+...+. ...+.|.||+||+++++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 5899999999998774322 2 22222222211 135789999999999999999999999999
Q ss_pred HHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeee
Q 001229 157 KNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIY 236 (1119)
Q Consensus 157 ~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIY 236 (1119)
+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.... ....|.|+|||+|||
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~----------~~~Giipr~~~~LF~~i~~~~-----~~~~~~v~vS~~EIy 145 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTD----------SDPGLMVLTMKDLFDKIEERK-----DDKEFEVSLSYLEIY 145 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCC----------CCCchHHHHHHHHHHhhhhcc-----cCceEEEEEEEEEEE
Confidence 99999999999999999999999999975 468999999999999998654 235799999999999
Q ss_pred ccccccccccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecc
Q 001229 237 NEQIGDLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKE 316 (1119)
Q Consensus 237 NE~I~DLL~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~ 316 (1119)
||+|+|||++....+.+++|+.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+....
T Consensus 146 ne~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~ 225 (338)
T cd01370 146 NETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRT 225 (338)
T ss_pred CCEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecC
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCccccccccc
Q 001229 317 ASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRES 396 (1119)
Q Consensus 317 ~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDS 396 (1119)
.. .......|+|+|||||||||...++..|.+++|+.+||+||++|++||.+|+.... +..||||||||||+||+|+
T Consensus 226 ~~--~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~-~~~~ipyR~SkLT~lL~d~ 302 (338)
T cd01370 226 AS--INQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK-KNKHIPYRDSKLTRLLKDS 302 (338)
T ss_pred CC--CCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC-CCCcCCCcCCHHHHHHHHh
Confidence 21 12346789999999999999999999999999999999999999999999997432 3489999999999999999
Q ss_pred CCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhccc
Q 001229 397 LGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSI 432 (1119)
Q Consensus 397 LGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~I 432 (1119)
|||||+|+|||||||+..+++||++||+||+|||.|
T Consensus 303 Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 303 LGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.7e-76 Score=667.97 Aligned_cols=314 Identities=34% Similarity=0.560 Sum_probs=279.6
Q ss_pred CceeEeeeCCCCcccccC--CCeEEEeCCCceee-----------------cCeeEEcCeecCCCCChHHHHHHhhHHHH
Q 001229 96 SVKVVVRIRPANDLERDS--NQTVKKVSSDSLAV-----------------GERKFAFDSVLDSNSNQEDIFQVVGLPLV 156 (1119)
Q Consensus 96 ~VkVvVRVRP~~~~E~~~--~~~v~~~s~~~l~v-----------------~~k~F~FD~VFd~~asQeeVY~~v~~pLV 156 (1119)
+|+|+|||||++..|.+. ...+...+...+.+ ..+.|.||+||+++++|++||+.++.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 699999999999876432 23333333333322 35689999999999999999999999999
Q ss_pred HHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeee
Q 001229 157 KNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIY 236 (1119)
Q Consensus 157 ~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIY 236 (1119)
+++++|||+||||||||||||||||+|++ .++|||||++++||+.+.. |.|+|||+|||
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~----------~~~Gli~r~~~~lF~~~~~-----------~~v~~S~~EIy 140 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSP----------GDGGILPRSLDVIFNSIGG-----------YSVFVSYVEIY 140 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCC----------CCCchHHHHHHHHHHHHHh-----------eeEEEEEEEEe
Confidence 99999999999999999999999999976 5789999999999999864 89999999999
Q ss_pred ccccccccccCC------CcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEE
Q 001229 237 NEQIGDLLDQTQ------RNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIV 310 (1119)
Q Consensus 237 NE~I~DLL~~~~------~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~V 310 (1119)
||+|||||++.. ..+.|++|+.++++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|+|
T Consensus 141 ne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v 220 (345)
T cd01368 141 NNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKL 220 (345)
T ss_pred CCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEE
Confidence 999999998654 36999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecccCCC---cccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccC--CCCCccCC
Q 001229 311 ESWCKEASSK---CFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLG--KSEDVIYR 385 (1119)
Q Consensus 311 eq~~~~~~~~---~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~--k~~hVPYR 385 (1119)
.+......+. .......|+|+|||||||||...+++.|.+++|+.+||+||++||+||.+|++.... +..|||||
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR 300 (345)
T cd01368 221 VQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYR 300 (345)
T ss_pred EEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCc
Confidence 9865542211 123456899999999999999999999999999999999999999999999975422 57899999
Q ss_pred CCcccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhc
Q 001229 386 CSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVK 430 (1119)
Q Consensus 386 DSKLTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK 430 (1119)
|||||+||||+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 301 ~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 301 DSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=5.7e-76 Score=665.81 Aligned_cols=330 Identities=40% Similarity=0.671 Sum_probs=295.1
Q ss_pred CCceeEeeeCCCCcccccCC-CeEEEeCCCceee-----------cCeeEEcCeecCCC-------CChHHHHHHhhHHH
Q 001229 95 PSVKVVVRIRPANDLERDSN-QTVKKVSSDSLAV-----------GERKFAFDSVLDSN-------SNQEDIFQVVGLPL 155 (1119)
Q Consensus 95 ~~VkVvVRVRP~~~~E~~~~-~~v~~~s~~~l~v-----------~~k~F~FD~VFd~~-------asQeeVY~~v~~pL 155 (1119)
++|+|+|||||++..|...+ ..+..+++..+.+ ..+.|.||+||+++ ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 47999999999998775433 3444444444332 24689999999998 99999999999999
Q ss_pred HHHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEee
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEI 235 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEI 235 (1119)
|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+..... ....|.|+|||+||
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~----------~~~Gli~r~~~~Lf~~~~~~~~----~~~~~~v~~S~~EI 146 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYK----------EEKGIIPRLCEELFQRIESKKE----QNLSYEVEVSYMEI 146 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCC----------CCCchHHHHHHHHHHHHhhccc----cCceEEEEEEEEEE
Confidence 999999999999999999999999999976 3689999999999999976542 24679999999999
Q ss_pred eccccccccccCC---CcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEe
Q 001229 236 YNEQIGDLLDQTQ---RNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVES 312 (1119)
Q Consensus 236 YNE~I~DLL~~~~---~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq 312 (1119)
|||+|||||++.. ..+.+++++.+|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+
T Consensus 147 y~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~ 226 (356)
T cd01365 147 YNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQ 226 (356)
T ss_pred ECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEE
Confidence 9999999998764 6899999999999999999999999999999999999999999999999999999999999998
Q ss_pred eecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhcc----CCCCCccCCCCc
Q 001229 313 WCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETL----GKSEDVIYRCSC 388 (1119)
Q Consensus 313 ~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~----~k~~hVPYRDSK 388 (1119)
...... ........|+|+|||||||||...++..+.+++|+.+||+||++||+||.+|+.... ++..||||||||
T Consensus 227 ~~~~~~-~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~Sk 305 (356)
T cd01365 227 KKLDKE-TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSV 305 (356)
T ss_pred EecccC-CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcH
Confidence 655421 122455789999999999999999999999999999999999999999999987542 356899999999
Q ss_pred ccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccc
Q 001229 389 LTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVIN 439 (1119)
Q Consensus 389 LTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vN 439 (1119)
||+||+|+|||||+|+||+||||...+++||++||+||+|+++|+|.|++|
T Consensus 306 LT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 306 LTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred HHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999999999999999999999999987
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=9.7e-75 Score=654.42 Aligned_cols=333 Identities=35% Similarity=0.572 Sum_probs=293.2
Q ss_pred CCceeEeeeCCCCcccccCC-CeEEEeCC--Cceee--------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCC
Q 001229 95 PSVKVVVRIRPANDLERDSN-QTVKKVSS--DSLAV--------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGY 163 (1119)
Q Consensus 95 ~~VkVvVRVRP~~~~E~~~~-~~v~~~s~--~~l~v--------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~Gy 163 (1119)
.+|+|+|||||+...|...+ ..+..+.. ..+.+ ..+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 57999999999988775432 33333332 22222 357899999999999999999999999999999999
Q ss_pred CcceeeeccccccccccccCCCCCCCC-CCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeecccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMWGPPSAMVE-DPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGD 242 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~G~~~~~~~-~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~D 242 (1119)
|+||||||||||||||||+|+...... +......+|||||++.+||+.+... ...|.|+|||+|||||+|||
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-------~~~~~v~~S~~EIy~e~v~D 154 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-------NTEYSVKVSYLELYNEELFD 154 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-------cceeEEEEEEEEeeCCeeee
Confidence 999999999999999999997643211 1122467899999999999999764 34699999999999999999
Q ss_pred ccccC---CCcceeeeC--CCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeeccc
Q 001229 243 LLDQT---QRNLEIKDD--PKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEA 317 (1119)
Q Consensus 243 LL~~~---~~~L~IrEd--~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~ 317 (1119)
||++. ..++.++++ ..+|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.....
T Consensus 155 LL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~ 234 (352)
T cd01364 155 LLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTI 234 (352)
T ss_pred CCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCC
Confidence 99876 578999999 5889999999999999999999999999999999999999999999999999999865432
Q ss_pred CCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccC
Q 001229 318 SSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESL 397 (1119)
Q Consensus 318 ~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSL 397 (1119)
.+......|+|+||||||+|+..+.++.+.+++|+..||+||++|++||.+|+. +..|||||+||||+||+|+|
T Consensus 235 --~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~----~~~~vpyR~S~LT~lL~~~L 308 (352)
T cd01364 235 --SGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVE----KSPHIPYRESKLTRLLQDSL 308 (352)
T ss_pred --CCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHc----CCCCCCCcccHHHHHHHHhc
Confidence 222345679999999999999999999999999999999999999999999986 45799999999999999999
Q ss_pred CCCceEeEeeecCCCCCcHHHHHHHHHHHHHhccccccccccc
Q 001229 398 GGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINE 440 (1119)
Q Consensus 398 GGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe 440 (1119)
||||+|+||+||||+..+++||++||+||+|+++|+|.|++|.
T Consensus 309 gg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 309 GGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 9999999999999999999999999999999999999999996
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3e-74 Score=643.96 Aligned_cols=306 Identities=32% Similarity=0.521 Sum_probs=274.4
Q ss_pred CCceeEeeeCCCCcccccCC-CeEEEeCCC-ceee-------------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHH
Q 001229 95 PSVKVVVRIRPANDLERDSN-QTVKKVSSD-SLAV-------------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNA 159 (1119)
Q Consensus 95 ~~VkVvVRVRP~~~~E~~~~-~~v~~~s~~-~l~v-------------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~v 159 (1119)
.+|+|+|||||+.+.|...+ ..+..+.++ .+.+ ..+.|.||+||+++++|++||+.++.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 36999999999998775322 222222222 2222 25789999999999999999999999999999
Q ss_pred HcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQ 239 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~ 239 (1119)
++|||+||||||||||||||||+|+. .++|||||++++||+.+.... ..|.|+|||+|||||+
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~----------~~~Glipr~~~~lf~~~~~~~-------~~~~v~~S~~EIy~e~ 143 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDE----------NQEGLYALAARDIFRLLAQPN-------DDLGVTVSFFEIYGGK 143 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcC----------CcCccHHHHHHHHHHHHhccc-------cccEEEEEEEeeecCc
Confidence 99999999999999999999999976 578999999999999997643 4689999999999999
Q ss_pred cccccccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCC
Q 001229 240 IGDLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASS 319 (1119)
Q Consensus 240 I~DLL~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~ 319 (1119)
|+|||++ ...+.+++++.++++|.|++++.|.|++|++++|..|.++|.++.|.+|..|||||+||+|+|.+...
T Consensus 144 v~DLL~~-~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---- 218 (322)
T cd01367 144 LFDLLND-RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---- 218 (322)
T ss_pred hhhhccC-ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC----
Confidence 9999987 56799999999999999999999999999999999999999999999999999999999999987543
Q ss_pred CcccCccccceeEEecCCCCCCCCcc-ccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCC
Q 001229 320 KCFSSSKTSRICLVDIAGADRNKLDD-VGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLG 398 (1119)
Q Consensus 320 ~~~~~~~~SrL~LVDLAGSER~~kt~-a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLG 398 (1119)
....|+|+|||||||||...++ ..+.+++|+.+||+||++|++||.+|++ +..||||||||||+||||+||
T Consensus 219 ----~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~----~~~~iPyRdSkLT~lL~~~L~ 290 (322)
T cd01367 219 ----NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALAS----NKAHVPFRGSKLTQVLRDSFI 290 (322)
T ss_pred ----CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhc----CCCcCCCccCHHHHHHHHhhC
Confidence 2457999999999999987765 5688999999999999999999999986 348999999999999999999
Q ss_pred CCceEeEeeecCCCCCcHHHHHHHHHHHHHhc
Q 001229 399 GNAKLTVVCNISPDNKDVGEILSTIRFGQRVK 430 (1119)
Q Consensus 399 GNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK 430 (1119)
|||+|+|||||||+..+++||++||+||+|+|
T Consensus 291 g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 291 GNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999986
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.4e-73 Score=638.51 Aligned_cols=318 Identities=40% Similarity=0.695 Sum_probs=287.1
Q ss_pred CCceeEeeeCCCCccccc-CC-CeEEEeCCCceeec----CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCccee
Q 001229 95 PSVKVVVRIRPANDLERD-SN-QTVKKVSSDSLAVG----ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLL 168 (1119)
Q Consensus 95 ~~VkVvVRVRP~~~~E~~-~~-~~v~~~s~~~l~v~----~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIf 168 (1119)
.+|+|+|||||++..|.. .. ..+...+...+.+. .+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 479999999999987733 22 33333334455554 5799999999999999999999999999999999999999
Q ss_pred eeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccCC
Q 001229 169 SYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQ 248 (1119)
Q Consensus 169 AYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~~ 248 (1119)
|||||||||||||+|+... ...+|||||++++||+.+.... ....|.|++||+|||||+|+|||++..
T Consensus 82 ayG~tgSGKT~Tm~G~~~~-------~~~~Giipr~~~~Lf~~~~~~~-----~~~~~~v~~S~~EIy~e~v~DLL~~~~ 149 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGD-------PELKGIIPRIVHDIFEHISSMD-----ENLEFHVKVSYLEIYMEKIRDLLDVSK 149 (325)
T ss_pred EeCCCCCCceEEecCCCCc-------cccCChHHHHHHHHHHHHhhcc-----CCceEEEEEEEEEEECCChhhcccCcc
Confidence 9999999999999997642 3578999999999999997642 346799999999999999999999888
Q ss_pred CcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCcccc
Q 001229 249 RNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSKTS 328 (1119)
Q Consensus 249 ~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~S 328 (1119)
..+.+++++.+|++|.|++++.|.|++|++.+|..|.++|+++.|.+|..|||||+||+|+|.+..... .....|
T Consensus 150 ~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~-----~~~~~s 224 (325)
T cd01369 150 DNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET-----GSKKRG 224 (325)
T ss_pred CCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC-----CCEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999998865432 234689
Q ss_pred ceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEeee
Q 001229 329 RICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCN 408 (1119)
Q Consensus 329 rL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~ 408 (1119)
+|+||||||+||..++++.|.+++|+..||+||++|++||.+|++ ++..|||||||+||+||+|+|||||+|+||+|
T Consensus 225 ~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~---~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~ 301 (325)
T cd01369 225 KLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTD---GKSTHIPYRDSKLTRILQDSLGGNSRTTLIIC 301 (325)
T ss_pred EEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHc---CCCCcCCCccCHHHHHHHHhcCCCCeEEEEEE
Confidence 999999999999999999999999999999999999999999986 33489999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhccc
Q 001229 409 ISPDNKDVGEILSTIRFGQRVKSI 432 (1119)
Q Consensus 409 ISPs~~~~eETLsTLrFAsRAK~I 432 (1119)
|||+..+++||++||+||+|+|+|
T Consensus 302 vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 302 CSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred eCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999987
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=8.9e-74 Score=639.23 Aligned_cols=307 Identities=34% Similarity=0.538 Sum_probs=279.6
Q ss_pred CceeEeeeCCCCcccccCCCeEEEeCC-----Cceee-------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCC
Q 001229 96 SVKVVVRIRPANDLERDSNQTVKKVSS-----DSLAV-------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGY 163 (1119)
Q Consensus 96 ~VkVvVRVRP~~~~E~~~~~~v~~~s~-----~~l~v-------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~Gy 163 (1119)
+|+|+|||||+.+.|.+....+..... ..+.+ ..+.|.||+||+++++|++||+.++.|+|+.+++||
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 80 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQ 80 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 589999999998887555444544433 12222 347899999999999999999999999999999999
Q ss_pred CcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDL 243 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DL 243 (1119)
|+||||||||||||||||+|+. .++|||||++++||+.+.... ..|.|++||+|||||.|+||
T Consensus 81 n~~i~ayG~tgSGKTyTm~G~~----------~~~Glipr~~~~Lf~~~~~~~-------~~~~v~~S~~EIy~e~v~DL 143 (319)
T cd01376 81 NATVFAYGSTGAGKTHTMLGDP----------NEPGLIPRTLSDLLRMGRKQA-------WTGAFSMSYYEIYNEKVYDL 143 (319)
T ss_pred ceEEEEECCCCCCCcEEEeCCc----------CccchHHHHHHHHHHHHhhcc-------ccceEEEEEEEEECCEeeEc
Confidence 9999999999999999999975 478999999999999886532 46899999999999999999
Q ss_pred cccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCccc
Q 001229 244 LDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFS 323 (1119)
Q Consensus 244 L~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~ 323 (1119)
|++....+.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 144 L~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~------- 216 (319)
T cd01376 144 LEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN------- 216 (319)
T ss_pred cCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-------
Confidence 9988888999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred CccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceE
Q 001229 324 SSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKL 403 (1119)
Q Consensus 324 ~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT 403 (1119)
....|+|+|||||||||...++..|.+++|+..||+||++||+||.+|+. +..|||||||+||+||+|+|||||+|
T Consensus 217 ~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~----~~~~ipyr~S~LT~lL~~~L~g~s~t 292 (319)
T cd01376 217 IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNK----GLPRIPYRESKLTRLLQDSLGGGSRC 292 (319)
T ss_pred ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhc----CCCcCCCccCHHHHHHHHhcCCCccE
Confidence 25689999999999999999999999999999999999999999999985 45899999999999999999999999
Q ss_pred eEeeecCCCCCcHHHHHHHHHHHHHhc
Q 001229 404 TVVCNISPDNKDVGEILSTIRFGQRVK 430 (1119)
Q Consensus 404 ~mIa~ISPs~~~~eETLsTLrFAsRAK 430 (1119)
+|||||||...+++||++||+||+|+|
T Consensus 293 ~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 293 IMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999986
No 17
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.7e-73 Score=637.00 Aligned_cols=316 Identities=38% Similarity=0.663 Sum_probs=286.9
Q ss_pred CceeEeeeCCCCcccccCCCeEEEeCCC-ceeec----CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeee
Q 001229 96 SVKVVVRIRPANDLERDSNQTVKKVSSD-SLAVG----ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSY 170 (1119)
Q Consensus 96 ~VkVvVRVRP~~~~E~~~~~~v~~~s~~-~l~v~----~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAY 170 (1119)
+|+|+||+||++..|......+..++.+ .+.+. .+.|.||+||+++++|++||+.++.|+|+++++|||+|||||
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ay 80 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAY 80 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEee
Confidence 5999999999998876555555555554 44432 589999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccCCCc
Q 001229 171 GQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRN 250 (1119)
Q Consensus 171 GQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~~~~ 250 (1119)
|||||||||||+|+. .++|||||++++||..+.... ...|.|+|||+|||||+|||||++....
T Consensus 81 G~tgSGKT~T~~G~~----------~~~Gli~r~~~~lf~~~~~~~------~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 144 (321)
T cd01374 81 GQTSSGKTFTMSGDE----------QEPGIIPLAVRDIFQRIQDTP------DREFLLRVSYLEIYNEKIKDLLSPSPQE 144 (321)
T ss_pred cCCCCCCceeccCCC----------CCCchHHHHHHHHHHHHhccc------CceEEEEEEEEEEEcCEeEEccCCCCCC
Confidence 999999999999975 568999999999999997543 3468999999999999999999998889
Q ss_pred ceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCccccce
Q 001229 251 LEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSKTSRI 330 (1119)
Q Consensus 251 L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~SrL 330 (1119)
+.+++++.+|++|.|++++.|.|++++.++|..|.++|+++.|.+|..|||||+||+|+|.+...... +......|+|
T Consensus 145 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~--~~~~~~~s~l 222 (321)
T cd01374 145 LRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS--ESGTVRVSTL 222 (321)
T ss_pred ceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC--CCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998765421 2234568999
Q ss_pred eEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEeeecC
Q 001229 331 CLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNIS 410 (1119)
Q Consensus 331 ~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~IS 410 (1119)
+||||||+||....+ .+.+++|+.+||+||++|++||.+|+... +..||||||||||+||+|+|||||+|+||||||
T Consensus 223 ~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~--~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vs 299 (321)
T cd01374 223 NLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGK--NSGHIPYRDSKLTRILQPSLSGNARTAIICTIS 299 (321)
T ss_pred EEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcC--CCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeC
Confidence 999999999999888 89999999999999999999999999732 258999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhccc
Q 001229 411 PDNKDVGEILSTIRFGQRVKSI 432 (1119)
Q Consensus 411 Ps~~~~eETLsTLrFAsRAK~I 432 (1119)
|...+++||++||+||+|+++|
T Consensus 300 p~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 300 PASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred CccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986
No 18
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.6e-73 Score=640.56 Aligned_cols=319 Identities=39% Similarity=0.656 Sum_probs=283.6
Q ss_pred CceeEeeeCCCCcccccC-CCeEEEeCC--Ccee---------ecCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCC
Q 001229 96 SVKVVVRIRPANDLERDS-NQTVKKVSS--DSLA---------VGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGY 163 (1119)
Q Consensus 96 ~VkVvVRVRP~~~~E~~~-~~~v~~~s~--~~l~---------v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~Gy 163 (1119)
+|+|+|||||++..|... ...+..+.. ..+. ...+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGY 81 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 699999999998876432 222333221 1111 2357899999999999999999999999999999999
Q ss_pred CcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDL 243 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DL 243 (1119)
|+||||||||||||||||+|+.. ....+|||||++++||..+..... ..|.|+|||+|||||+|+||
T Consensus 82 n~~i~ayG~tgSGKTyTm~G~~~-------~~~~~Glipr~~~~Lf~~~~~~~~------~~~~v~~S~~Eiy~e~v~DL 148 (333)
T cd01371 82 NGTIFAYGQTGTGKTFTMEGVRE-------PPELRGIIPNSFAHIFGHIAKAEN------VQFLVRVSYLEIYNEEVRDL 148 (333)
T ss_pred ceeEEecCCCCCCCcEeecCCCC-------cccccchHHHHHHHHHHHHhhccC------ccEEEEEEEEEeeCCeeeeC
Confidence 99999999999999999999753 235789999999999999976432 56999999999999999999
Q ss_pred cccCC-CcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcc
Q 001229 244 LDQTQ-RNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCF 322 (1119)
Q Consensus 244 L~~~~-~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~ 322 (1119)
|++.. ..+.+++++.+|++|.|++++.|.|++++..+|..|.++|.++.|.+|..|||||+||+|+|++..... .+.
T Consensus 149 L~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~ 226 (333)
T cd01371 149 LGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE--DGE 226 (333)
T ss_pred CCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccC--CCC
Confidence 98765 579999999999999999999999999999999999999999999999999999999999999876542 223
Q ss_pred cCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCce
Q 001229 323 SSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAK 402 (1119)
Q Consensus 323 ~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSk 402 (1119)
.....|+|+|||||||||...++..+.+++|+..||+||.+|++||.+|+. ++..||||||||||+||+|+|||||+
T Consensus 227 ~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~---~~~~~ipyR~SkLT~lL~~~l~g~s~ 303 (333)
T cd01371 227 NHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLGGNSK 303 (333)
T ss_pred CcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHh---CCCCcCCCccCHHHHHHHHhcCCCce
Confidence 446689999999999999999999999999999999999999999999986 44569999999999999999999999
Q ss_pred EeEeeecCCCCCcHHHHHHHHHHHHHhccc
Q 001229 403 LTVVCNISPDNKDVGEILSTIRFGQRVKSI 432 (1119)
Q Consensus 403 T~mIa~ISPs~~~~eETLsTLrFAsRAK~I 432 (1119)
|+||+||+|...+++||++||+||+|+|.|
T Consensus 304 t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 304 TVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999987
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.5e-73 Score=639.86 Aligned_cols=328 Identities=37% Similarity=0.595 Sum_probs=289.7
Q ss_pred CceeEeeeCCCCcccccCC-CeEEEe-CC-Cceeec-CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeec
Q 001229 96 SVKVVVRIRPANDLERDSN-QTVKKV-SS-DSLAVG-ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYG 171 (1119)
Q Consensus 96 ~VkVvVRVRP~~~~E~~~~-~~v~~~-s~-~~l~v~-~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYG 171 (1119)
+|+|+||+||+...|.... ..+..+ .. ..+.++ .+.|.||+||+++++|++||+.++.|+|+++++|||+||||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG 81 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYG 81 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeec
Confidence 5999999999998775443 223322 22 233344 6899999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccC---C
Q 001229 172 QTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQT---Q 248 (1119)
Q Consensus 172 QTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~---~ 248 (1119)
||||||||||+|+.... ....++|||||++++||+.+..... ...|.|+|||+|||||+|||||++. .
T Consensus 82 ~tgSGKT~Tm~G~~~~~----~~~~~~Giipr~~~~LF~~~~~~~~-----~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 152 (341)
T cd01372 82 QTGSGKTYTMGTAFTAS----EDEEEVGIIPRAIQHIFKKIDEKKD-----EPDFQLKVSFLELYNEEVRDLLSPSTSEK 152 (341)
T ss_pred CCCCCCcEEecCCCccc----cccccCChHHHHHHHHHHHHHhccc-----cceEEEEEEEEEeECCeeecCCCCcccCC
Confidence 99999999999975321 2346899999999999999986532 3579999999999999999999876 5
Q ss_pred CcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCC-----Cccc
Q 001229 249 RNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASS-----KCFS 323 (1119)
Q Consensus 249 ~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~-----~~~~ 323 (1119)
..+.+++++.++++|.|++++.|.++++++.+|..|..+|.+++|.+|..|||||+||+|+|.+....... ....
T Consensus 153 ~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd01372 153 SPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKN 232 (341)
T ss_pred CCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999987664211 1234
Q ss_pred CccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceE
Q 001229 324 SSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKL 403 (1119)
Q Consensus 324 ~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT 403 (1119)
....|+|+||||||+|+..++++.+.+++|+..||+||.+|++||.+|+... .+..|||||+||||+||+|+|||||+|
T Consensus 233 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~-~~~~~ipyR~S~LT~lL~~~Lgg~s~t 311 (341)
T cd01372 233 STLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDES-KKGSHVPYRDSKLTRLLQDSLGGNSHT 311 (341)
T ss_pred ceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcC-CCCCCCCCcccHHHHHHHHhcCCCceE
Confidence 4678999999999999999999999999999999999999999999998743 235799999999999999999999999
Q ss_pred eEeeecCCCCCcHHHHHHHHHHHHHhcccc
Q 001229 404 TVVCNISPDNKDVGEILSTIRFGQRVKSIR 433 (1119)
Q Consensus 404 ~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik 433 (1119)
+||+||||...+++||++||+||+|+++||
T Consensus 312 ~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 312 LMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.4e-72 Score=631.48 Aligned_cols=315 Identities=37% Similarity=0.614 Sum_probs=275.8
Q ss_pred CceeEeeeCCCCcccccC------CCeEE-EeCCCce------eecCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcC
Q 001229 96 SVKVVVRIRPANDLERDS------NQTVK-KVSSDSL------AVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAG 162 (1119)
Q Consensus 96 ~VkVvVRVRP~~~~E~~~------~~~v~-~~s~~~l------~v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~G 162 (1119)
+|+|+||+||+...+... +..+. ..+.+.. ....+.|.||+||++ ++|++||+.++.|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G 79 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDG 79 (334)
T ss_pred CeEEEEECCCCCCCCCccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCC
Confidence 489999999998743211 01111 1111100 112468999999999 999999999999999999999
Q ss_pred CCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeecccccc
Q 001229 163 YNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGD 242 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~D 242 (1119)
||+||||||||||||||||+|+.. ...++|||||++++||..++... ...|.|+|||+|||||+|||
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~-------~~~~~Glipr~~~~lf~~~~~~~------~~~~~v~~S~~Eiy~e~v~D 146 (334)
T cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTE-------SYKDRGLIPRALEQVFREVAMRA------TKTYTVHVSYLEIYNEQLYD 146 (334)
T ss_pred CccceeeecCCCCCCeEEccCCCC-------cccCCchHHHHHHHHHHHHHhcc------CcceEEEEEEEEEECCEeec
Confidence 999999999999999999999763 22578999999999999997643 34699999999999999999
Q ss_pred ccccCC------CcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecc
Q 001229 243 LLDQTQ------RNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKE 316 (1119)
Q Consensus 243 LL~~~~------~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~ 316 (1119)
||++.. +.+.|++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|++....
T Consensus 147 LL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~ 226 (334)
T cd01375 147 LLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSRE 226 (334)
T ss_pred CCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecC
Confidence 998774 67999999999999999999999999999999999999999999999999999999999999987544
Q ss_pred cCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCccccccccc
Q 001229 317 ASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRES 396 (1119)
Q Consensus 317 ~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDS 396 (1119)
.. ......|+|+|||||||||..+++..+..++|+..||+||++|++||.+|++. ...||||||||||+||+|+
T Consensus 227 ~~---~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~---~~~~ipyRdSkLT~lL~d~ 300 (334)
T cd01375 227 AG---SEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEK---ARTHVPYRNSKLTHVLRDS 300 (334)
T ss_pred CC---CCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhC---CCCCCCCcccHHHHHHHHh
Confidence 22 23456899999999999999999999999999999999999999999999863 3489999999999999999
Q ss_pred CCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhc
Q 001229 397 LGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVK 430 (1119)
Q Consensus 397 LGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK 430 (1119)
|||||+|+|||||||...+++||++||+||+|++
T Consensus 301 Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 301 LGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred cCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999985
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=7.5e-71 Score=617.06 Aligned_cols=318 Identities=41% Similarity=0.651 Sum_probs=285.8
Q ss_pred CCCceeEeeeCCCCcccccCCCeEEEeCC---Cceee-----cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCc
Q 001229 94 DPSVKVVVRIRPANDLERDSNQTVKKVSS---DSLAV-----GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNV 165 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~E~~~~~~v~~~s~---~~l~v-----~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~ 165 (1119)
.|+|+|+|||||+...+......+..+.+ ..+.+ ..+.|.||+||+++++|++||+.+ .|+|+++++|+|+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHH-HHHHHHHhCCCce
Confidence 47899999999998877533333333333 22332 246899999999999999999985 8999999999999
Q ss_pred ceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccc
Q 001229 166 SLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD 245 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~ 245 (1119)
||||||+|||||||||+|+. .++|||||++++||..+....+ ....|.|++||+|||||+|+|||+
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~----------~~~Gli~r~~~~lf~~~~~~~~----~~~~~~v~~S~~EIy~e~v~DLL~ 145 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPP----------ENPGIIPRALEQLFNTAEELKE----KGWSYTITASMLEIYNETIRDLLA 145 (329)
T ss_pred EEEEeCCCCCCCcEEecCCC----------CCCCcHHHHHHHHHHHHHhhhc----cCceEEEEEEEEEEECCEeEECCC
Confidence 99999999999999999976 5689999999999999987543 245799999999999999999999
Q ss_pred cC---CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcc
Q 001229 246 QT---QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCF 322 (1119)
Q Consensus 246 ~~---~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~ 322 (1119)
+. ...+.|++++.++++|.|++++.|.|++|+.++|..|..+|.++.|.+|..|||||+||+|+|.+.... .
T Consensus 146 ~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~-----~ 220 (329)
T cd01366 146 TKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ-----T 220 (329)
T ss_pred CCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC-----C
Confidence 76 678999999999999999999999999999999999999999999999999999999999999986543 1
Q ss_pred cCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCce
Q 001229 323 SSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAK 402 (1119)
Q Consensus 323 ~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSk 402 (1119)
.....|+|+||||||+|+..++++.+.+++|+..||+||.+|++||.+|+. +..|||||+||||+||+|+|||||+
T Consensus 221 ~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~----~~~~ipyr~S~LT~lL~~~l~g~~~ 296 (329)
T cd01366 221 GEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRS----KDSHVPYRNSKLTYLLQDSLGGNSK 296 (329)
T ss_pred CcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhc----CCCcCCCcccHhHHHHHHhcCCCce
Confidence 345689999999999999999999999999999999999999999999986 4789999999999999999999999
Q ss_pred EeEeeecCCCCCcHHHHHHHHHHHHHhcccccc
Q 001229 403 LTVVCNISPDNKDVGEILSTIRFGQRVKSIRND 435 (1119)
Q Consensus 403 T~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~ 435 (1119)
|+|||||||...+++||++||+||+|++.|++.
T Consensus 297 t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 297 TLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999999999873
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.2e-69 Score=605.91 Aligned_cols=324 Identities=44% Similarity=0.727 Sum_probs=291.2
Q ss_pred CceeEeeeCCCCcccccC-CCeEEEeCCC---ceee-------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCC
Q 001229 96 SVKVVVRIRPANDLERDS-NQTVKKVSSD---SLAV-------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYN 164 (1119)
Q Consensus 96 ~VkVvVRVRP~~~~E~~~-~~~v~~~s~~---~l~v-------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN 164 (1119)
+|+|+|||||+...|... ...+..+.+. .+.+ ..+.|.||+||+++++|++||+.++.|+|+.++.|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 589999999999877432 2333333222 3332 3478999999999999999999999999999999999
Q ss_pred cceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeecccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL 244 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL 244 (1119)
+|||+||+|||||||||+|+. .++|||||++++||..+..... ...|.|+|||+|||+|+|+|||
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~----------~~~Gli~~~~~~Lf~~~~~~~~-----~~~~~v~~S~~ei~~e~v~DLL 145 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTP----------DSPGIIPRALKDLFEKIDKLEE-----GWQFQVKVSYLEIYNEKIRDLL 145 (335)
T ss_pred eeEEEeCCCCCCCceEecCCC----------CCCCHHHHHHHHHHHHhhhccc-----CceEEEEEEEEEEECCEEEECc
Confidence 999999999999999999975 4679999999999999976432 3579999999999999999999
Q ss_pred ccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccC
Q 001229 245 DQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSS 324 (1119)
Q Consensus 245 ~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~ 324 (1119)
++....+.+++++.+++++.|++++.|.|++++.++|..|..+|.+++|.+|..|||||+||+|+|.+..... ....
T Consensus 146 ~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~---~~~~ 222 (335)
T smart00129 146 NPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNS---SSGS 222 (335)
T ss_pred CCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCC---CCCC
Confidence 9988999999999999999999999999999999999999999999999999999999999999999764331 2234
Q ss_pred ccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEe
Q 001229 325 SKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLT 404 (1119)
Q Consensus 325 ~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~ 404 (1119)
...|+|+||||||+|+....++.+.+++|+..||+||.+|++||.+|++. ++..|||||+|+||+||+++|||+|+|+
T Consensus 223 ~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~--~~~~~ip~r~S~LT~lL~~~L~g~~~~~ 300 (335)
T smart00129 223 GKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADG--QKSRHIPYRDSKLTRLLQDSLGGNSKTL 300 (335)
T ss_pred EEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhc--CCCCCCCCcCcHhHHHHHHHcCCCCeEE
Confidence 67899999999999999999999999999999999999999999999863 3578999999999999999999999999
Q ss_pred EeeecCCCCCcHHHHHHHHHHHHHhcccccccccc
Q 001229 405 VVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVIN 439 (1119)
Q Consensus 405 mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vN 439 (1119)
||+||||...+++||++||+||+++++|+|+|++|
T Consensus 301 ~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 301 MIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred EEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999876
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.1e-70 Score=654.42 Aligned_cols=323 Identities=39% Similarity=0.586 Sum_probs=286.4
Q ss_pred CCCCceeEeeeCCCCcccccC-CCeEEEeCCC-ceee---------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHc
Q 001229 93 SDPSVKVVVRIRPANDLERDS-NQTVKKVSSD-SLAV---------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALA 161 (1119)
Q Consensus 93 ~~~~VkVvVRVRP~~~~E~~~-~~~v~~~s~~-~l~v---------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~ 161 (1119)
-.|+|+|+|||||+.+.+... ...+...+.. .+.+ ..+.|.||+||+|.++|++||..+- |+|+++|+
T Consensus 312 LkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~-~lv~S~lD 390 (670)
T KOG0239|consen 312 LKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVS-PLVQSALD 390 (670)
T ss_pred hhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHH-HHHHHHhc
Confidence 368999999999999877653 2223222221 1111 1235999999999999999999976 99999999
Q ss_pred CCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccc
Q 001229 162 GYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIG 241 (1119)
Q Consensus 162 GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~ 241 (1119)
|||+||||||||||||||||.|+. ..++|||||++.+||..+..... .+.|.+.+||+|||||.|+
T Consensus 391 GYnVCIFAYGQTGSGKTyTM~G~~---------~~~~Giipral~~lF~~~~~~~~-----g~~y~~~~s~~EIYNe~i~ 456 (670)
T KOG0239|consen 391 GYNVCIFAYGQTGSGKTYTMSGPT---------PEDPGIIPRALEKLFRTITSLKS-----GWKYDKTVSMLEIYNEAIR 456 (670)
T ss_pred CcceeEEEecccCCCccccccCCC---------cccCCccHHHHHHHHHHHHhhcc-----CceEEeeeehhHHHHHHHH
Confidence 999999999999999999999951 15789999999999999987542 6889999999999999999
Q ss_pred cccccC--CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCC
Q 001229 242 DLLDQT--QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASS 319 (1119)
Q Consensus 242 DLL~~~--~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~ 319 (1119)
|||++. ...+.|++++.++.+|.|++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|......
T Consensus 457 DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~--- 533 (670)
T KOG0239|consen 457 DLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINEL--- 533 (670)
T ss_pred HhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccC---
Confidence 999876 478999999999999999999999999999999999999999999999999999999999999765222
Q ss_pred CcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCC
Q 001229 320 KCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGG 399 (1119)
Q Consensus 320 ~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGG 399 (1119)
......+.|+|||||||||++++++.|.|++|+.+||+||++||.||.||+. +..||||||||||+|||++|||
T Consensus 534 --t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~----k~~HiPyRNSKLT~lLq~sLGG 607 (670)
T KOG0239|consen 534 --TGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS----KRSHIPYRNSKLTQLLQDSLGG 607 (670)
T ss_pred --cccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh----cCCCCcccccchHHHhHhhhCC
Confidence 1345688999999999999999999999999999999999999999999986 6789999999999999999999
Q ss_pred CceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccc
Q 001229 400 NAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVIN 439 (1119)
Q Consensus 400 NSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vN 439 (1119)
++||+|+++|||...++.||+++|+||.|++.+...+-.-
T Consensus 608 ~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 608 DSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred ccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 9999999999999999999999999999999998777543
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.6e-68 Score=596.57 Aligned_cols=316 Identities=43% Similarity=0.714 Sum_probs=285.0
Q ss_pred CceeEeeeCCCCcccccCCCeEEEeCC-Cceeec---------CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCc
Q 001229 96 SVKVVVRIRPANDLERDSNQTVKKVSS-DSLAVG---------ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNV 165 (1119)
Q Consensus 96 ~VkVvVRVRP~~~~E~~~~~~v~~~s~-~~l~v~---------~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~ 165 (1119)
+|+|+|||||+...+......+..+.+ +.+.+. .+.|.||+||+++++|++||+.++.|+|++++.|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 589999999998776444444555544 555553 4899999999999999999999999999999999999
Q ss_pred ceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccc
Q 001229 166 SLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD 245 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~ 245 (1119)
||||||+|||||||||+|+. ..+|||||++++||..+..... ....|.|++||+|||+|+|+|||+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~----------~~~Gli~~~~~~Lf~~~~~~~~----~~~~~~v~~S~~Ei~~e~v~DLL~ 146 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSP----------KDPGIIPRALEDLFNLIDERKE----KNKSFSVSVSYLEIYNEKVYDLLS 146 (328)
T ss_pred eEEEecCCCCCCeEEecCCC----------CCCchHHHHHHHHHHHHhhccc----cCceEEEEEEEEEEECCEeEECCC
Confidence 99999999999999999976 5789999999999999976532 235699999999999999999999
Q ss_pred cC--CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCccc
Q 001229 246 QT--QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFS 323 (1119)
Q Consensus 246 ~~--~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~ 323 (1119)
+. ...+.+++++.+++++.|++++.|.|++|++.+|..|.++|.++.|.+|..|||||+||+|+|.+....... .
T Consensus 147 ~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~---~ 223 (328)
T cd00106 147 PEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG---R 223 (328)
T ss_pred CCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC---c
Confidence 87 889999999999999999999999999999999999999999999999999999999999999987654321 1
Q ss_pred CccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceE
Q 001229 324 SSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKL 403 (1119)
Q Consensus 324 ~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT 403 (1119)
....|+|+||||||+|+....+..+.+++|+..||+||.+|++||.+|+... +..|||||+||||+||||+|||+|+|
T Consensus 224 ~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~--~~~~ip~r~SkLT~lL~~~l~g~~~t 301 (328)
T cd00106 224 SIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQ--KKKHIPYRDSKLTRLLQDSLGGNSKT 301 (328)
T ss_pred cEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcC--CCCcCCCcCcHHHHHHHHhcCCCCeE
Confidence 3568999999999999999998999999999999999999999999998632 15899999999999999999999999
Q ss_pred eEeeecCCCCCcHHHHHHHHHHHHHhc
Q 001229 404 TVVCNISPDNKDVGEILSTIRFGQRVK 430 (1119)
Q Consensus 404 ~mIa~ISPs~~~~eETLsTLrFAsRAK 430 (1119)
+|||||+|...+++||++||+||+|||
T Consensus 302 ~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 302 LMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999986
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=4.4e-69 Score=602.61 Aligned_cols=317 Identities=41% Similarity=0.680 Sum_probs=275.1
Q ss_pred eeCCCCcccccCCCeEEE-eC-----------CCceeecCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceee
Q 001229 102 RIRPANDLERDSNQTVKK-VS-----------SDSLAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLS 169 (1119)
Q Consensus 102 RVRP~~~~E~~~~~~v~~-~s-----------~~~l~v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfA 169 (1119)
||||++..|...+..... .. ........+.|.||+||+++++|++||+.++.|+|+++|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 899999888654432211 11 111122357899999999999999999999999999999999999999
Q ss_pred eccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccC--
Q 001229 170 YGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQT-- 247 (1119)
Q Consensus 170 YGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~-- 247 (1119)
||+|||||||||+|+. ...++|||||++++||..+...... ....|.|+|||+|||||+|+|||++.
T Consensus 81 yG~tgSGKT~Tm~G~~--------~~~~~Gli~~~~~~lf~~~~~~~~~---~~~~~~v~vS~~EIy~e~v~DLL~~~~~ 149 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSN--------DPSEPGLIPRALRDLFSQIEERKEK---SGYEFSVSVSYLEIYNEKVYDLLSPNNS 149 (335)
T ss_dssp EESTTSSHHHHHTBST--------STTTBSHHHHHHHHHHHHHHHHTTT---STEEEEEEEEEEEEETTEEEETTSTTSS
T ss_pred eccccccccccccccc--------cccccchhhhHHHHHhhhhcccccc---ccccccccccchhhhhhhhhhhcCcccc
Confidence 9999999999999971 1267999999999999999876432 13579999999999999999999987
Q ss_pred --CCcceeeeCCCCC-eEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccC
Q 001229 248 --QRNLEIKDDPKHG-FYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSS 324 (1119)
Q Consensus 248 --~~~L~IrEd~~~G-v~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~ 324 (1119)
..++.+++++..| ++|.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|+|.+......... ..
T Consensus 150 ~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~-~~ 228 (335)
T PF00225_consen 150 KSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDE-ES 228 (335)
T ss_dssp STTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEE-EE
T ss_pred ccccccceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccc-cc
Confidence 3579999999977 9999999999999999999999999999999999999999999999999998876532221 23
Q ss_pred ccccceeEEecCCCCCCCCccc-cccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceE
Q 001229 325 SKTSRICLVDIAGADRNKLDDV-GRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKL 403 (1119)
Q Consensus 325 ~~~SrL~LVDLAGSER~~kt~a-~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT 403 (1119)
...|+|+||||||+|+....++ .+.+++|+..||+||.+|++||.+|+.. ++..|||||+||||+||+|+|||||+|
T Consensus 229 ~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~--~~~~~vpyr~SkLT~lL~d~l~g~s~t 306 (335)
T PF00225_consen 229 VKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG--SKQSHVPYRDSKLTRLLKDSLGGNSKT 306 (335)
T ss_dssp EEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT--TSTSSSCGGGSHHHHHTGGGTSSSSEE
T ss_pred eeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc--ccchhhhhhcccccceecccccccccc
Confidence 5789999999999999988886 4788999999999999999999999974 357899999999999999999999999
Q ss_pred eEeeecCCCCCcHHHHHHHHHHHHHhccc
Q 001229 404 TVVCNISPDNKDVGEILSTIRFGQRVKSI 432 (1119)
Q Consensus 404 ~mIa~ISPs~~~~eETLsTLrFAsRAK~I 432 (1119)
+||+||||...+++||++||+||+++|+|
T Consensus 307 ~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 307 ILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp EEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred eeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999987
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.3e-67 Score=595.96 Aligned_cols=325 Identities=33% Similarity=0.504 Sum_probs=283.4
Q ss_pred CCCCCCceeEeeeCCCCcccccCC-CeEEEe-CCCceee-------------cCeeEEcCeecCCCCChHHHHHHhhHHH
Q 001229 91 EVSDPSVKVVVRIRPANDLERDSN-QTVKKV-SSDSLAV-------------GERKFAFDSVLDSNSNQEDIFQVVGLPL 155 (1119)
Q Consensus 91 ~~~~~~VkVvVRVRP~~~~E~~~~-~~v~~~-s~~~l~v-------------~~k~F~FD~VFd~~asQeeVY~~v~~pL 155 (1119)
.+....|.|+||-||++..|.... .-|+.+ +.+.+.+ .++.|.||++||..++++.||..+++||
T Consensus 204 ~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~Pl 283 (676)
T KOG0246|consen 204 GVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPL 283 (676)
T ss_pred CCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHH
Confidence 346678999999999998874322 223333 3333333 3468999999999999999999999999
Q ss_pred HHHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEee
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEI 235 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEI 235 (1119)
|..+|+|.-+|+||||||||||||||.|..++.. .....||.-++.+|+|..+..- ......+.|+||||||
T Consensus 284 V~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~----q~~s~giya~aa~Dvf~~L~~p----~Y~~~~l~v~~tFFEI 355 (676)
T KOG0246|consen 284 VKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKA----QDCSKGIYALAARDVFRLLRQP----TYRKLDLKVYVTFFEI 355 (676)
T ss_pred HHHHHhCCceeeeeeccCCCCceeecccccCccc----ccccccchhhhhhHHHHHhccc----chhhcceEEEEEEEEE
Confidence 9999999999999999999999999999875432 2245799999999999988642 2345679999999999
Q ss_pred eccccccccccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeec
Q 001229 236 YNEQIGDLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCK 315 (1119)
Q Consensus 236 YNE~I~DLL~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~ 315 (1119)
|+.++||||+. +..|.++||.+..++|.||+|..|.++++++.+|..|++.|+++.|..|..|||||+||+|.+....
T Consensus 356 YgGKvfDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~- 433 (676)
T KOG0246|consen 356 YGGKVYDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG- 433 (676)
T ss_pred eCcchhhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC-
Confidence 99999999986 6789999999999999999999999999999999999999999999999999999999999996421
Q ss_pred ccCCCcccCccccceeEEecCCCCCC-CCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCccccccc
Q 001229 316 EASSKCFSSSKTSRICLVDIAGADRN-KLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLR 394 (1119)
Q Consensus 316 ~~~~~~~~~~~~SrL~LVDLAGSER~-~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLq 394 (1119)
.....|++.||||||+||. +.+.+++++..||+.|||||++|..||+||.. ...|+|||.||||.+|+
T Consensus 434 -------~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~----nk~H~PFR~SKLTqVLR 502 (676)
T KOG0246|consen 434 -------EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR----NKSHLPFRGSKLTQVLR 502 (676)
T ss_pred -------cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcC----CCCCCCchhhhHHHHHH
Confidence 1245899999999999997 45667888889999999999999999999975 55799999999999999
Q ss_pred ccCCC-CceEeEeeecCCCCCcHHHHHHHHHHHHHhccccccc
Q 001229 395 ESLGG-NAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDP 436 (1119)
Q Consensus 395 DSLGG-NSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p 436 (1119)
|||-| |++|+||+||||....++.||+|||||.|+|......
T Consensus 503 DSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 503 DSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred HhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 99988 9999999999999999999999999999999875443
No 27
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-64 Score=585.34 Aligned_cols=332 Identities=32% Similarity=0.530 Sum_probs=285.4
Q ss_pred CCCCceeEeeeCCCCcccccCCCeEEEeCCCceee----------------cCeeEEcCeecCCCCChHHHHHHhhHHHH
Q 001229 93 SDPSVKVVVRIRPANDLERDSNQTVKKVSSDSLAV----------------GERKFAFDSVLDSNSNQEDIFQVVGLPLV 156 (1119)
Q Consensus 93 ~~~~VkVvVRVRP~~~~E~~~~~~v~~~s~~~l~v----------------~~k~F~FD~VFd~~asQeeVY~~v~~pLV 156 (1119)
....|.|+||+||+.+.. +...++..++...+.. -.+.|.|.+||+|+++|.+||+.++.|+|
T Consensus 29 ~~d~v~v~~rvrP~~~~~-~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV 107 (809)
T KOG0247|consen 29 SKDPVLVVCRVRPLSDAS-EDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLV 107 (809)
T ss_pred hhcchheeEeecCCCCCc-cccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHH
Confidence 456799999999987422 1112222222222111 13689999999999999999999999999
Q ss_pred HHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhc------------------
Q 001229 157 KNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQEN------------------ 218 (1119)
Q Consensus 157 ~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~------------------ 218 (1119)
.+++.|.|..+|+||.|||||||||+|++ ..+||+||++.-||..|+.....
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~~----------~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~ 177 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGTP----------DRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEE 177 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecCC----------CCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHH
Confidence 99999999999999999999999999987 56899999999999877631100
Q ss_pred -----------------cC------------------------CCceeEEEEEEEEeeeccccccccccCC-----Cc-c
Q 001229 219 -----------------SD------------------------GKQINYQCRCSFLEIYNEQIGDLLDQTQ-----RN-L 251 (1119)
Q Consensus 219 -----------------s~------------------------~~~~~fsV~vSylEIYNE~I~DLL~~~~-----~~-L 251 (1119)
.. ...+.|.|+|||+|||||-|||||.+.. .. .
T Consensus 178 ~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ 257 (809)
T KOG0247|consen 178 DALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLK 257 (809)
T ss_pred HHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhh
Confidence 00 1457799999999999999999997542 22 6
Q ss_pred eeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCcccccee
Q 001229 252 EIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSKTSRIC 331 (1119)
Q Consensus 252 ~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~SrL~ 331 (1119)
.+++|.++.+||.|+++|.|.+.+|++.+|..|.++|++++|.+|..|||||+||+|.|.+.+... +......|.|.
T Consensus 258 ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~---~s~~i~vSqls 334 (809)
T KOG0247|consen 258 LLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ---DSNQITVSQLS 334 (809)
T ss_pred hhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc---ccCceeEEeee
Confidence 788999999999999999999999999999999999999999999999999999999999877652 22456789999
Q ss_pred EEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhc-cCCCCCccCCCCcccccccccCCCCceEeEeeecC
Q 001229 332 LVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQET-LGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNIS 410 (1119)
Q Consensus 332 LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~-~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~IS 410 (1119)
|||||||||..++++.|.||+||++||.||++||+||.+|.++. .+...+|||||||||++++.+|.|+.+++||+||+
T Consensus 335 LvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vn 414 (809)
T KOG0247|consen 335 LVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVN 414 (809)
T ss_pred eeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecC
Confidence 99999999999999999999999999999999999999999876 33458999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhccccccccc
Q 001229 411 PDNKDVGEILSTIRFGQRVKSIRNDPVI 438 (1119)
Q Consensus 411 Ps~~~~eETLsTLrFAsRAK~IkN~p~v 438 (1119)
|...+|+|+++.|+||.-+..|.+..-+
T Consensus 415 p~~e~YdEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 415 PKAEDYDENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred CchhhHHHHHHHHHHHHhcccccccCcc
Confidence 9999999999999999999998766554
No 28
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-65 Score=612.40 Aligned_cols=343 Identities=34% Similarity=0.554 Sum_probs=300.2
Q ss_pred eCCCCcccc-cCCCeEEEeC---CCceeecCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeecccccccc
Q 001229 103 IRPANDLER-DSNQTVKKVS---SDSLAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKT 178 (1119)
Q Consensus 103 VRP~~~~E~-~~~~~v~~~s---~~~l~v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKT 178 (1119)
|||+...|. .++..+..+. +.....++.+|+||+||+....|.++|+.++.|+++.+|.|||+||+||||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkT 80 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKT 80 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCce
Confidence 588877663 3343333322 223334568999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccCC--CcceeeeC
Q 001229 179 YTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQ--RNLEIKDD 256 (1119)
Q Consensus 179 yTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~~--~~L~IrEd 256 (1119)
|||.+.... .....|||||++++||.+|..... ..|.|.|||+|||++.|+|||.+.. .++.+++
T Consensus 81 ytmgt~~~~------~~~~~Gvipr~v~~~f~~i~~~~~------~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e- 147 (913)
T KOG0244|consen 81 YTMGTNDAP------AQDTVGVIPRAVSTLFTRIGKTES------FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE- 147 (913)
T ss_pred eeccccccc------ccccCCcCcchHHHHHHHHHhhhc------cceeeeeeeeeccchhhhhhcChhhhhhceeccc-
Confidence 999886432 122369999999999999987542 5699999999999999999998543 4577777
Q ss_pred CCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCccccceeEEecC
Q 001229 257 PKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSKTSRICLVDIA 336 (1119)
Q Consensus 257 ~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~SrL~LVDLA 336 (1119)
+++++.+.|+++..|.+..+++..|..|...|++++|+||..|||||+|||+.+++...... .....++|+|||||
T Consensus 148 ~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~----~s~~~sKlhlVDLA 223 (913)
T KOG0244|consen 148 PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK----RSSFCSKLHLVDLA 223 (913)
T ss_pred cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc----cchhhhhhheeecc
Confidence 78889999999999999999999999999999999999999999999999999987654321 23457999999999
Q ss_pred CCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEeeecCCCCCcH
Q 001229 337 GADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDV 416 (1119)
Q Consensus 337 GSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~ISPs~~~~ 416 (1119)
||||.++|++.|+|++||.+||.+|++||+||.+|.+.. +..|||||||||||||||+||||+.|+||+||||+..+.
T Consensus 224 GSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~k--k~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~ 301 (913)
T KOG0244|consen 224 GSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAK--KGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNA 301 (913)
T ss_pred ccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhh--cCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhh
Confidence 999999999999999999999999999999999998855 357999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccccccH-HHHHHHHHHHHHHHHHHHHHh
Q 001229 417 GEILSTIRFGQRVKSIRNDPVINEISE-DDVNDLSDQIRQLKEELIRAK 464 (1119)
Q Consensus 417 eETLsTLrFAsRAK~IkN~p~vNe~~~-~~v~~L~~~I~~Lk~EL~rlk 464 (1119)
+||++||+||.||+.|+|+|++|.++. ..++.|+.+|..|+.+|...+
T Consensus 302 ~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 302 QETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred hhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999654 457889999999999997765
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.7e-61 Score=569.62 Aligned_cols=321 Identities=39% Similarity=0.609 Sum_probs=286.3
Q ss_pred CCCCceeEeeeCCCCcccccCCCeEEEeCCCceee---c-CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCccee
Q 001229 93 SDPSVKVVVRIRPANDLERDSNQTVKKVSSDSLAV---G-ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLL 168 (1119)
Q Consensus 93 ~~~~VkVvVRVRP~~~~E~~~~~~v~~~s~~~l~v---~-~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIf 168 (1119)
....++++++..|-...+ .+.......... . ..+|.||+||++.++|++||+.++.|+++.++.|||+|||
T Consensus 20 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tvf 94 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE-----RLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVF 94 (568)
T ss_pred eecCceEEEeecCCCcch-----heeecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEE
Confidence 456789999999865432 122222221111 1 5679999999999999999999999999999999999999
Q ss_pred eeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccCC
Q 001229 169 SYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQ 248 (1119)
Q Consensus 169 AYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~~ 248 (1119)
|||||||||||||.|.. .++||||+++..||+.+..... ...|.|.|||+|||||+++|||.+..
T Consensus 95 ayGqTgsgKtyt~~G~~----------~~~Gii~~~l~~lf~~l~~~~~-----~~~~~v~is~lEiYnEk~~DLl~~~~ 159 (568)
T COG5059 95 AYGQTGSGKTYTMSGTE----------EEPGIIPLSLKELFSKLEDLSM-----TKDFAVSISYLEIYNEKIYDLLSPNE 159 (568)
T ss_pred EEcccCCCceeEeecCc----------cccchHHHHHHHHHHHHHhccc-----CcceeeEeehhHHHhhHHHhhccCcc
Confidence 99999999999999976 5789999999999999987543 24599999999999999999999877
Q ss_pred CcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCcccc
Q 001229 249 RNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSKTS 328 (1119)
Q Consensus 249 ~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~S 328 (1119)
..+.++++...+++|.|+++..|.++++++.+|..|..+|+++.|.+|..|||||+||++++.+...... ....+
T Consensus 160 ~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~-----~~~~~ 234 (568)
T COG5059 160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG-----TSETS 234 (568)
T ss_pred ccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc-----ceecc
Confidence 7788999999999999999999999999999999999999999999999999999999999998765432 22347
Q ss_pred ceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEeee
Q 001229 329 RICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCN 408 (1119)
Q Consensus 329 rL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~ 408 (1119)
+|+||||||||+...+++.+.+++||..||+||++||+||++|... ++..|||||+|||||||+++|||+|+|+||||
T Consensus 235 ~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~--~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~ 312 (568)
T COG5059 235 KLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDK--KKSGHIPYRESKLTRLLQDSLGGNCNTRVICT 312 (568)
T ss_pred eEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhcc--ccCCccchhhhHHHHHHHHhcCCCccEEEEEE
Confidence 9999999999999999999999999999999999999999999863 46789999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhccccccccccc
Q 001229 409 ISPDNKDVGEILSTIRFGQRVKSIRNDPVINE 440 (1119)
Q Consensus 409 ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe 440 (1119)
|+|...++++|.+||+||.||+.|+|.+.+|.
T Consensus 313 Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 313 ISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred EcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 99999999999999999999999999999995
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=4e-49 Score=409.48 Aligned_cols=179 Identities=42% Similarity=0.660 Sum_probs=166.6
Q ss_pred HHHHhhHHHHHHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeE
Q 001229 147 IFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINY 226 (1119)
Q Consensus 147 VY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~f 226 (1119)
||+.++ |+|+.+++|||+||||||||||||||||+|+. .++|||||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~----------~~~Giip~~~~~------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR----------EGAGIIPRTVTD------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC----------CCCCcchHHHHH-------------------
Confidence 999999 99999999999999999999999999999975 567999999987
Q ss_pred EEEEEEEeeeccccccccccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEE
Q 001229 227 QCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVF 306 (1119)
Q Consensus 227 sV~vSylEIYNE~I~DLL~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIF 306 (1119)
++++|..|.++|.++.|.+|..|||||+||
T Consensus 58 --------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~ 87 (186)
T cd01363 58 --------------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVF 87 (186)
T ss_pred --------------------------------------------------HHHHHhhccccccccccCCCCccCcccEEE
Confidence 889999999999999999999999999999
Q ss_pred EEEEEeeecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCC
Q 001229 307 TFIVESWCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRC 386 (1119)
Q Consensus 307 tI~Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRD 386 (1119)
+|+|++...... +......++|+||||||||+...++..+.+++|+.+||+||.+|++||.+|++ +..||||||
T Consensus 88 ~i~v~~~~~~~~--~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~----~~~~vpyr~ 161 (186)
T cd01363 88 RIHFGGKNALAS--ATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE----RDSHVPYRE 161 (186)
T ss_pred EEEEEEeecCCC--CccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhc----CCCCCCCcc
Confidence 999998765432 22445789999999999999999999999999999999999999999999986 567999999
Q ss_pred CcccccccccCCCCceEeEeeecCC
Q 001229 387 SCLTHLLRESLGGNAKLTVVCNISP 411 (1119)
Q Consensus 387 SKLTrLLqDSLGGNSkT~mIa~ISP 411 (1119)
||||+||||+|||||+|+||+||||
T Consensus 162 SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 162 SKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred cHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999999998
No 31
>PLN03188 kinesin-12 family protein; Provisional
Probab=98.10 E-value=0.00016 Score=92.50 Aligned_cols=198 Identities=21% Similarity=0.291 Sum_probs=138.7
Q ss_pred hhcccccccccccccchhHHHHHHHHHHHHhhccccCCCCcccccccchhhhhhhhhhhccccCCCCchHHHHHHHhhhh
Q 001229 800 VQEVPSHQNGNISFEMNEKEVLLKEIESLRTKLQYTDASPFKSTENLRSSLLSRSIQLRKSIEARPNTAEELEKERERWT 879 (1119)
Q Consensus 800 ~~~~~~~~~~~~~~~~~e~e~l~~ei~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~er~~w~ 879 (1119)
+..+||+++. -.|+++++++|+.++++++++ + |+ .+-||
T Consensus 1034 ~~~i~e~~~~-----~~e~~l~~er~~w~e~es~wi------------s--lt----------------------eelr~ 1072 (1320)
T PLN03188 1034 LNTIPESTDE-----SPEKKLEQERLRWTEAESKWI------------S--LA----------------------EELRT 1072 (1320)
T ss_pred cccccccccc-----chhHHHHHHHHHHHHHhhhhe------------e--ch----------------------HHHHH
Confidence 4556665554 358999999999999999952 1 11 35699
Q ss_pred hhcccceehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001229 880 EMESEWICLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALS---RAVLGHARMVEHYADLQEKYNDLVSRHRAIM 956 (1119)
Q Consensus 880 e~es~wi~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~---~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~ 956 (1119)
|.|+ |++|+|+||+||++.++.+|.|+ +=|.-||+ |-++-.|-+=|-|.+|-+||....+- |-
T Consensus 1073 eles-~r~l~Ekl~~EL~~eK~c~eel~----------~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~eg---i~ 1138 (1320)
T PLN03188 1073 ELDA-SRALAEKQKHELDTEKRCAEELK----------EAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEG---ID 1138 (1320)
T ss_pred HHHH-HHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 9999 99999999999999999999875 45667886 77889999999999999999877653 33
Q ss_pred HhHHHHHHHHHH-hcccCcchhhHH---HHHHH----HhhhhhhhHHHHHHHHHhhHH------HHHHhhhhHHHHhhhh
Q 001229 957 EGVAEVKRAAAK-AGAKGHGSRFAK---SVAAE----LSALRVERDREREFLKKENKS------LKIQLRDTAEAVHAAG 1022 (1119)
Q Consensus 957 ~gi~~vk~aaak-ag~~g~~~~f~~---~laae----~s~lr~ereke~~~~~~en~~------l~~qlrdtaeav~aag 1022 (1119)
+-=.-.=||..| ||.|=+ ..+|. +|-+| ---||-|-..=+-+|||--.. |=.-||+.-||+..|
T Consensus 1139 dvkkaaakag~kg~~~~f~-~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a- 1216 (1320)
T PLN03188 1139 DVKKAAARAGVRGAESKFI-NALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVA- 1216 (1320)
T ss_pred HHHHHHHHhccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333333444444 455443 24444 44444 333444444445556665443 556899999998765
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHH----HHHHHHhhh
Q 001229 1023 ELLVRLKEAEQAASVAEANFSGVQQENEKLKK----QIDKLKRKH 1063 (1119)
Q Consensus 1023 ellvrl~eaeea~~~a~~~~~~~~qe~~k~~~----q~~klk~kh 1063 (1119)
++-+..||.-...+-++.+|||+ +|.-||.-+
T Consensus 1217 ---------~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1217 ---------QKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666667777788888875 456677644
No 32
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.84 E-value=2.8e-07 Score=112.01 Aligned_cols=249 Identities=21% Similarity=0.242 Sum_probs=150.3
Q ss_pred CCCCCceeEeeeCCCCcccccCC-------------CeEEEeCCCceeecCeeEEcCeecCCCCChHHHHHHhhHHHHHH
Q 001229 92 VSDPSVKVVVRIRPANDLERDSN-------------QTVKKVSSDSLAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKN 158 (1119)
Q Consensus 92 ~~~~~VkVvVRVRP~~~~E~~~~-------------~~v~~~s~~~l~v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~ 158 (1119)
++..++.|+|+|+|......+.. ..+..-...........|.||.+|.....+..++.... .+++.
T Consensus 302 gG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~ 380 (568)
T COG5059 302 GGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQS-QLSQS 380 (568)
T ss_pred CCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHHH-hhhhh
Confidence 34458999999999874321110 01111100112222357999999999998888887665 66777
Q ss_pred HHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeecc
Q 001229 159 ALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNE 238 (1119)
Q Consensus 159 vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE 238 (1119)
.+.| +++||++++|+++||.- ...++..-.+..+|..+..... ..+.+...+-++++|-.
T Consensus 381 ~~~~----~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~ 440 (568)
T COG5059 381 SLSG----IFAYMQSLKKETETLKS------------RIDLIMKSIISGTFERKKLLKE----EGWKYKSTLQFLRIEID 440 (568)
T ss_pred hhhh----HHHHHhhhhhhhhcccc------------hhhhhhhhhhhhhhhhhhhhhh----hHHHHHHHHHHHHHHHH
Confidence 7777 99999999999999964 2346666666777777665432 12233333444555522
Q ss_pred ccccccccCCC-c-ceeeeCCC-CCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeec
Q 001229 239 QIGDLLDQTQR-N-LEIKDDPK-HGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCK 315 (1119)
Q Consensus 239 ~I~DLL~~~~~-~-L~IrEd~~-~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~ 315 (1119)
...++...... . ..+..... ....+..++.. .....+.... ..+...+..+.+..|..++++|.+|+.+......
T Consensus 441 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 518 (568)
T COG5059 441 RLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSI-PEETSDRVES-EKASKLRSSASTKLNLRSSRSHSKFRDHLNGSNS 518 (568)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhc-chhhhhhhhh-hhhccchhhcccchhhhhcccchhhhhcccchhh
Confidence 22222221110 0 00000000 00000011100 1111111111 1567788889999999999999999876643211
Q ss_pred ccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHh
Q 001229 316 EASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALT 372 (1119)
Q Consensus 316 ~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALs 372 (1119)
. ...-.++.|||||+||. .+...|.++++..++|++|..+|.+|.++.
T Consensus 519 ~--------~~~~~~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 519 S--------TKELSLNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred h--------hHHHHhhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 1 01111799999999999 888999999999999999999999998763
No 33
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.28 E-value=10 Score=51.06 Aligned_cols=77 Identities=29% Similarity=0.412 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHH---HHHHHHHhhHHHHHHhh
Q 001229 936 EHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDR---EREFLKKENKSLKIQLR 1012 (1119)
Q Consensus 936 e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~erek---e~~~~~~en~~l~~qlr 1012 (1119)
++...|++.+..+-..++++.+.++++..+...++ +=+.+|..++..++..+++ |.+.+.++...++.++.
T Consensus 772 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~ 845 (1163)
T COG1196 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAE------RRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34488899999999999999999999999888887 3345666777666665433 44555666666666555
Q ss_pred hhHHHH
Q 001229 1013 DTAEAV 1018 (1119)
Q Consensus 1013 dtaeav 1018 (1119)
...+++
T Consensus 846 ~l~~~~ 851 (1163)
T COG1196 846 ELEEEL 851 (1163)
T ss_pred HHHHhH
Confidence 444444
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.24 E-value=3 Score=51.27 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=60.7
Q ss_pred hhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001229 892 LRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAA 966 (1119)
Q Consensus 892 lr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aa 966 (1119)
|..+.+.-|...++++.+|..+++=.++|..-.+-....|..+.+....|...+.++-+|=+..-+-|..++.-.
T Consensus 162 Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457778888889999998888888888888877778888888888999999888888888888888777655
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.98 E-value=3.3 Score=51.02 Aligned_cols=70 Identities=34% Similarity=0.369 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhhhhhHHHHHH---HHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001229 979 AKSVAAELSALRVERDREREF---LKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQ 1055 (1119)
Q Consensus 979 ~~~laae~s~lr~ereke~~~---~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q 1055 (1119)
+.-|+.||+.+..-|++-..- -|-|+..|+.||-|.+.+ |||+. ...++++. .+++..+..+.+
T Consensus 306 ~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~----------lke~~--~q~~qEk~-~l~~~~e~~k~~ 372 (546)
T PF07888_consen 306 AELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLE----------LKEGR--SQWAQEKQ-ALQHSAEADKDE 372 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----------HHHHH--HHHHHHHH-HHHHHHHHhHHH
Confidence 345778888888877774443 355777888888766543 34433 44455554 333444444455
Q ss_pred HHHHHh
Q 001229 1056 IDKLKR 1061 (1119)
Q Consensus 1056 ~~klk~ 1061 (1119)
|++|++
T Consensus 373 ie~L~~ 378 (546)
T PF07888_consen 373 IEKLSR 378 (546)
T ss_pred HHHHHH
Confidence 555543
No 36
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.35 E-value=1.8 Score=59.01 Aligned_cols=147 Identities=19% Similarity=0.215 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhH---------HHHHHHHhh
Q 001229 918 EELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFA---------KSVAAELSA 988 (1119)
Q Consensus 918 eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~---------~~laae~s~ 988 (1119)
+||.+-+.--=.=.+.+-+++.+|++++.++-+.+.........+-+.+-+--...|...|. ..||+-+..
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 517 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQ 517 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHH
Confidence 78877776666666777788889999999988888877777766655544422222222222 233433333
Q ss_pred -------hhhhhHHH---HHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001229 989 -------LRVERDRE---REFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDK 1058 (1119)
Q Consensus 989 -------lr~ereke---~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~k 1058 (1119)
|+-.=+.. .+.|.+=++.+..++-|..+..+-+.++=-+|-++++....+-++.+.++|+-+.|.++|.+
T Consensus 518 ~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~ 597 (1486)
T PRK04863 518 LRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR 597 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222 23466667777888888888888888888899999999999999999999999999999999
Q ss_pred HHhhhh
Q 001229 1059 LKRKHK 1064 (1119)
Q Consensus 1059 lk~kh~ 1064 (1119)
|.+++-
T Consensus 598 l~~~ap 603 (1486)
T PRK04863 598 LAARAP 603 (1486)
T ss_pred HHHhCh
Confidence 998864
No 37
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.14 E-value=3.6 Score=57.14 Aligned_cols=210 Identities=22% Similarity=0.305 Sum_probs=136.6
Q ss_pred HHHHHhhhhhhcccceehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001229 871 LEKERERWTEMESEWICLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVS 950 (1119)
Q Consensus 871 ~~~er~~w~e~es~wi~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~ 950 (1119)
++...-+|+|.. +||.+||.-...-|..-.+|+ ++|... ++.+=+|+-+|+..+-.|.-
T Consensus 1152 ~e~~~k~e~e~~--------~l~~~leee~~~~e~~~~~lr--~~~~~~-----------~~el~~qle~l~~~k~~lek 1210 (1930)
T KOG0161|consen 1152 LELNKKREAEVQ--------KLRRDLEEETLDHEAQIEELR--KKHADS-----------LAELQEQLEQLQKDKAKLEK 1210 (1930)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHH--HHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 566677777764 688888888877777777777 555554 56677899999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhcccCcc-hhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhh
Q 001229 951 RHRAIMEGVAEVKRAAAKAGAKGHG-SRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLK 1029 (1119)
Q Consensus 951 ~hr~i~~gi~~vk~aaakag~~g~~-~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~ 1029 (1119)
-++..+..++|+-..+...+..+.+ .+|.+.+=+.|+.|+..=..=-+.+.+ |- ..+..=-.=+|+|.=+|-
T Consensus 1211 ek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~----l~---~q~~~l~~E~~~l~~~le 1283 (1930)
T KOG0161|consen 1211 EKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRND----LT---AKRSRLQNENEELSRQLE 1283 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHhhhhHHHHhhHhH
Confidence 9999999999999988876665533 358888888888887733221111111 11 112222233688888888
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCcccccCccccCccccccc------CCCCc
Q 001229 1030 EAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAESKLPESALQPLYREDSDVAHSS------AILDD 1103 (1119)
Q Consensus 1030 eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~laes~lp~~~~~~~~~~~~~~~~~~------~~~~~ 1103 (1119)
|+|--+..+.+-...+..+.+.++.|++.--|.+-.--.++.++=-| -..|+--|.++. ...++ .....
T Consensus 1284 e~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e----~~~l~e~leee~-e~~~~l~r~lsk~~~e 1358 (1930)
T KOG0161|consen 1284 EAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHE----LDLLREQLEEEQ-EAKNELERKLSKANAE 1358 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888876555444444444443322 222222233222 11111 23457
Q ss_pred hHHHHHHhhh
Q 001229 1104 DQAWRAEFGA 1113 (1119)
Q Consensus 1104 ~~~wr~~f~~ 1113 (1119)
.++||..|..
T Consensus 1359 ~~~~~~k~e~ 1368 (1930)
T KOG0161|consen 1359 LAQWKKKFEE 1368 (1930)
T ss_pred HHHHHHHHHH
Confidence 7899998874
No 38
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=94.04 E-value=0.03 Score=52.86 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=37.7
Q ss_pred HHHHHhhhhh------------hhhcccccccc-cccccchhHHHHHHHHHHHHhhc
Q 001229 789 AAKIEQLNRL------------EVQEVPSHQNG-NISFEMNEKEVLLKEIESLRTKL 832 (1119)
Q Consensus 789 a~~i~ql~~l------------e~~~~~~~~~~-~~~~~~~e~e~l~~ei~~l~~~l 832 (1119)
-.+|+-|..- |-.++++|+.+ ++|++.||||+|+.||..|++||
T Consensus 30 ~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 30 KEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYVEGEREMLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 3467777732 78899999998 99999999999999999999986
No 39
>PRK03918 chromosome segregation protein; Provisional
Probab=93.87 E-value=11 Score=48.84 Aligned_cols=14 Identities=50% Similarity=0.755 Sum_probs=11.4
Q ss_pred eeeccccccccccc
Q 001229 168 LSYGQTGSGKTYTM 181 (1119)
Q Consensus 168 fAYGQTGSGKTyTM 181 (1119)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 47899999999653
No 40
>PRK02224 chromosome segregation protein; Provisional
Probab=93.85 E-value=25 Score=45.78 Aligned_cols=71 Identities=20% Similarity=0.340 Sum_probs=36.3
Q ss_pred hhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001229 892 LRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKA 969 (1119)
Q Consensus 892 lr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaaka 969 (1119)
++..|+..+.-.+.++.||+ ++..++.-|...=..+=+.+.+|++.+..|-+++-.+..-+...+++-..+
T Consensus 375 ~~~~l~~~~~~l~~l~~el~-------el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 445 (880)
T PRK02224 375 AREAVEDRREEIEELEEEIE-------ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEA 445 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444 333333333322223334556777777777777666666666555554433
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.78 E-value=14 Score=49.88 Aligned_cols=87 Identities=22% Similarity=0.210 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhhhcccceehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001229 869 EELEKERERWTEMESEWICLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDL 948 (1119)
Q Consensus 869 ~~~~~er~~w~e~es~wi~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l 948 (1119)
.+++.-+..|.....+|--++. ...++|....+......++..+..=.++-.+.++-.+..+...++.+.++.+.+..+
T Consensus 274 ~~~~e~~~~~~~~~~~~~~~~~-~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 352 (1163)
T COG1196 274 SELEELREELEELQEELLELKE-EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445555566666666665555 456788888888888888888776667777778888888888888775555555544
Q ss_pred HHHHHHHH
Q 001229 949 VSRHRAIM 956 (1119)
Q Consensus 949 ~~~hr~i~ 956 (1119)
.+....+.
T Consensus 353 ~~~~~~~~ 360 (1163)
T COG1196 353 LAELEEAK 360 (1163)
T ss_pred HHHHHHHH
Confidence 44444333
No 42
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.61 E-value=16 Score=48.11 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=13.6
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
+..-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4567899999999887
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.42 E-value=19 Score=47.64 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=11.7
Q ss_pred eeeccccccccccc
Q 001229 168 LSYGQTGSGKTYTM 181 (1119)
Q Consensus 168 fAYGQTGSGKTyTM 181 (1119)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 45799999999865
No 44
>PRK02224 chromosome segregation protein; Provisional
Probab=92.46 E-value=44 Score=43.50 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=11.7
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
.+-+|++|||||..+
T Consensus 26 ~~i~G~Ng~GKStil 40 (880)
T PRK02224 26 TVIHGVNGSGKSSLL 40 (880)
T ss_pred EEEECCCCCCHHHHH
Confidence 345899999998653
No 45
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.29 E-value=40 Score=46.26 Aligned_cols=123 Identities=11% Similarity=0.228 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhh
Q 001229 934 MVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRD 1013 (1119)
Q Consensus 934 ~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrd 1013 (1119)
-+..+.+|++.-.+|-..=....+-|.+++....- -...+..+-++...++.+++.+.+.+.++-..++..+.+
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP------LETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888777776555555555554443321 246788888888888888888888888887777776666
Q ss_pred hHHHHhhhhhhhh-----hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001229 1014 TAEAVHAAGELLV-----RLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRK 1062 (1119)
Q Consensus 1014 taeav~aagellv-----rl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~k 1062 (1119)
-..+....=+.+- .|.+.+..+...+.....++.+.+.+..+|++|+++
T Consensus 953 ~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~ke 1006 (1311)
T TIGR00606 953 IHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQD 1006 (1311)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555444332221 266666666666666677777777777776655543
No 46
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.23 E-value=0.068 Score=58.04 Aligned_cols=51 Identities=27% Similarity=0.484 Sum_probs=29.6
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
..|+||.-+..+ .++.+|..+- .+.+.--..+| .+|-||++|+||||-|.+
T Consensus 3 ~~~tFdnfv~g~-~N~~a~~~~~-~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVGE-SNELAYAAAK-AIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--TT-TTHHHHHHHH-HHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcCC-cHHHHHHHHH-HHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 469999876543 3555554322 33333111233 488999999999997754
No 47
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.20 E-value=12 Score=50.60 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=28.0
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Q 001229 1023 ELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMIT 1069 (1119)
Q Consensus 1023 ellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t 1069 (1119)
|+.-.+..++.++..|++....+.+....+..+..+++++.++--.+
T Consensus 466 e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 512 (1201)
T PF12128_consen 466 EEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEE 512 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666666666665543333
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.79 E-value=22 Score=47.13 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=10.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHh
Q 001229 1038 AEANFSGVQQENEKLKKQIDKLKR 1061 (1119)
Q Consensus 1038 a~~~~~~~~qe~~k~~~q~~klk~ 1061 (1119)
.+++...++++..++.++++.++.
T Consensus 460 ~~~~~~~~~~~l~~~~~~l~~l~~ 483 (1164)
T TIGR02169 460 LAADLSKYEQELYDLKEEYDRVEK 483 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 49
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.43 E-value=25 Score=49.45 Aligned_cols=93 Identities=27% Similarity=0.378 Sum_probs=70.7
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHhhhhh------------------hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH--
Q 001229 996 EREFLKKENKSLKIQLRDTAEAVHAAGE------------------LLVRLKEAEQAASVAEANFSGVQQENEKLKKQ-- 1055 (1119)
Q Consensus 996 e~~~~~~en~~l~~qlrdtaeav~aage------------------llvrl~eaeea~~~a~~~~~~~~qe~~k~~~q-- 1055 (1119)
.-+.|+.+|+.|+..+.|-++.+.=+|- |=+.|-|||.+...++..-+.++=+...++.+
T Consensus 1485 ~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~e 1564 (1930)
T KOG0161|consen 1485 QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIE 1564 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4667888999999988888888776664 34667788887777777766655555555555
Q ss_pred ---------HHHHHhhhhhHHHHHHHHH-hhcCCCcccccCcc
Q 001229 1056 ---------IDKLKRKHKMEMITMKQYL-AESKLPESALQPLY 1088 (1119)
Q Consensus 1056 ---------~~klk~kh~~e~~t~~~~l-aes~lp~~~~~~~~ 1088 (1119)
+|.++|.|-..|.+|.--| +|.|.-.++++--+
T Consensus 1565 r~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KK 1607 (1930)
T KOG0161|consen 1565 RRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKK 1607 (1930)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Confidence 6789999999999998888 88888888886533
No 50
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.42 E-value=0.38 Score=58.32 Aligned_cols=93 Identities=23% Similarity=0.341 Sum_probs=56.2
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC------CCCCCCCCCCCCCCCCcHHH
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG------PPSAMVEDPSPRSKEGIVPR 203 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G------~~~~~~~~~s~~~~~GIIPR 203 (1119)
..|....-|.|.-+|-.- ...||+.+-+|.-.-+ -.|.|||||||||-. .+.-... ++. -
T Consensus 3 ~~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~A-----hNK----T 68 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLA-----HNK----T 68 (663)
T ss_pred CceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEe-----cch----h
Confidence 457777888888888643 3456666666654433 469999999999943 2211111 111 2
Q ss_pred HHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccc
Q 001229 204 IFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIG 241 (1119)
Q Consensus 204 al~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~ 241 (1119)
...+||......-. ... +...|||+..|.-..|
T Consensus 69 LAaQLy~Efk~fFP---~Na--VEYFVSYYDYYQPEAY 101 (663)
T COG0556 69 LAAQLYSEFKEFFP---ENA--VEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHHHHHHHHHhCc---Ccc--eEEEeeeccccCcccc
Confidence 34566766654322 223 4446899999965543
No 51
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.39 E-value=46 Score=41.42 Aligned_cols=213 Identities=24% Similarity=0.291 Sum_probs=130.5
Q ss_pred hhHHHHHhHhHHHHHHHHhhhhhhhhcccccccccccccchhHHHHHHHHHHHHhhccccCCCCcccccccchhhhhhhh
Q 001229 776 KKENELENICTEQAAKIEQLNRLEVQEVPSHQNGNISFEMNEKEVLLKEIESLRTKLQYTDASPFKSTENLRSSLLSRSI 855 (1119)
Q Consensus 776 ~re~~le~~c~~qa~~i~ql~~le~~~~~~~~~~~~~~~~~e~e~l~~ei~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 855 (1119)
..+..|+.+-.+++.++ .|.|.|.+|+-+||.|+...+-|+..
T Consensus 291 ~~~~~l~~l~~Eie~kE-----------------------eE~e~lq~~~d~Lk~~Ie~Q~iS~~d-------------- 333 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKE-----------------------EEIEKLQKENDELKKQIELQGISGED-------------- 333 (581)
T ss_pred HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHhcCCCHHH--------------
Confidence 45566666666666555 57788899999999998854333221
Q ss_pred hhhccccCCCCchHHHHHHHhhhhhhcccceehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHH
Q 001229 856 QLRKSIEARPNTAEELEKERERWTEMESEWICLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMV 935 (1119)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~er~~w~e~es~wi~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~ 935 (1119)
-| ..+.|.+.-.+-..+.+.|++...|-+=|++.-.+
T Consensus 334 -----------------ve----------------~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~---------- 370 (581)
T KOG0995|consen 334 -----------------VE----------------RMNLERNKLKRELNKIQSELDRLSKEVWELKLEIE---------- 370 (581)
T ss_pred -----------------HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----------
Confidence 11 11233333444456667777777776666665332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-HHHHHH------HHHHhcccCc-ch-hhHHHHHHHHhhhhhhhHHHHHHHHHhhHH
Q 001229 936 EHYADLQEKYNDLVSRHRAIMEG-VAEVKR------AAAKAGAKGH-GS-RFAKSVAAELSALRVERDREREFLKKENKS 1006 (1119)
Q Consensus 936 e~y~~l~e~~~~l~~~hr~i~~g-i~~vk~------aaakag~~g~-~~-~f~~~laae~s~lr~ereke~~~~~~en~~ 1006 (1119)
..+-+|+-+.+++-.--|+|-=| +.+-|- +|+--|+.+. += .|++.|-.||+--=++++.|-.-|.+--..
T Consensus 371 ~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~ 450 (581)
T KOG0995|consen 371 DFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSN 450 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777666 333322 2333333331 11 389999999998888877766666554433
Q ss_pred HHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1007 LKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1007 l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
+. -+++|--|--|++.-+|..|+.=--.-.+ .++.+-.|..++||+|-++-..+=.+|++-+
T Consensus 451 ~~---~~i~E~~~~l~~~~~el~~~~~~~~~~k~---e~eee~~k~~~E~e~le~~l~~l~l~~~~~m 512 (581)
T KOG0995|consen 451 KA---STIEEKIQILGEIELELKKAESKYELKKE---EAEEEWKKCRKEIEKLEEELLNLKLVLNTSM 512 (581)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 24566777788888888877654433332 3445556667777777777777666776665
No 52
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=91.33 E-value=27 Score=46.15 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=11.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhhh
Q 001229 1039 EANFSGVQQENEKLKKQIDKLKRKH 1063 (1119)
Q Consensus 1039 ~~~~~~~~qe~~k~~~q~~klk~kh 1063 (1119)
+.....++++.+.+..+++.++..+
T Consensus 858 ~~~~~~~~~~~~~l~~~~~~~~~~~ 882 (1179)
T TIGR02168 858 AAEIEELEELIEELESELEALLNER 882 (1179)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 53
>PRK09039 hypothetical protein; Validated
Probab=91.16 E-value=17 Score=42.63 Aligned_cols=138 Identities=20% Similarity=0.247 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhH---HH
Q 001229 920 LDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERD---RE 996 (1119)
Q Consensus 920 l~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ere---ke 996 (1119)
|-+.|.+=....+++=+.-++|+..|..+.++-.+....++ .+++.......=+..|.++|..++++=. .+
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~------~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~ 138 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA------ELAGAGAAAEGRAGELAQELDSEKQVSARALAQ 138 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 66666666666666666667777777765554443333332 1111111111223445677777776544 35
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHhhhhhHH-HHHHHHH
Q 001229 997 REFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQ-IDKLKRKHKMEM-ITMKQYL 1074 (1119)
Q Consensus 997 ~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q-~~klk~kh~~e~-~t~~~~l 1074 (1119)
-..|+.|...|+.||.....|+. ++|+.-.-++.++...+++.+++..+ +..|.+ |+.++ ..|.+.|
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~----------~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~-~~~~~~~~l~~~~ 207 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALD----------ASEKRDRESQAKIADLGRRLNVALAQRVQELNR-YRSEFFGRLREIL 207 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHh
Confidence 66799999999999554444433 33444445555555555555555433 333332 33333 3444455
No 54
>PRK06893 DNA replication initiation factor; Validated
Probab=91.16 E-value=0.13 Score=56.11 Aligned_cols=48 Identities=19% Similarity=0.089 Sum_probs=33.0
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
..++||..+.... ..- +.-+...+-.++|..++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~~-~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNN-LLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCCh-HHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 4689999886543 221 12223333457788899999999999998855
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.13 E-value=22 Score=45.50 Aligned_cols=84 Identities=24% Similarity=0.316 Sum_probs=50.7
Q ss_pred HHHHHhhHHHHHHhhhhHHHHhhhhhhh---hhh-hh----HH---HHHHHHHHhhhhhHH--------------HHHHH
Q 001229 998 EFLKKENKSLKIQLRDTAEAVHAAGELL---VRL-KE----AE---QAASVAEANFSGVQQ--------------ENEKL 1052 (1119)
Q Consensus 998 ~~~~~en~~l~~qlrdtaeav~aagell---vrl-~e----ae---ea~~~a~~~~~~~~q--------------e~~k~ 1052 (1119)
+.|..|.+.|+.+|+.+=|.++.+=+=+ -.. || +| .|++.-|+...-+|. ..-.+
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~a 627 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDA 627 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776664433 112 33 22 244455555444432 22356
Q ss_pred HHHHHH---HHhhhhhHHHHHHHHHhh--cCCCc
Q 001229 1053 KKQIDK---LKRKHKMEMITMKQYLAE--SKLPE 1081 (1119)
Q Consensus 1053 ~~q~~k---lk~kh~~e~~t~~~~lae--s~lp~ 1081 (1119)
++|||- .-++-+.||..||+-||| .-+|.
T Consensus 628 krq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 628 KRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 777765 446678999999999987 45666
No 56
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.85 E-value=22 Score=45.85 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001229 929 LGHARMVEHYADLQEKYNDLVSRHRAI 955 (1119)
Q Consensus 929 ~ghar~~e~y~~l~e~~~~l~~~hr~i 955 (1119)
.-|--+.|-|++|.++|.+||.|-.-|
T Consensus 424 ~ry~klkek~t~l~~~h~~lL~K~~di 450 (980)
T KOG0980|consen 424 NRYEKLKEKYTELRQEHADLLRKYDDI 450 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666666655444
No 57
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.65 E-value=2.1 Score=54.58 Aligned_cols=170 Identities=18% Similarity=0.290 Sum_probs=87.3
Q ss_pred hhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001229 890 DELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKA 969 (1119)
Q Consensus 890 ~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaaka 969 (1119)
++|..+|...+..++.++.|+.. +++.+.-+-......-|.|..|+.+...|=.-+.+...-|......-.+-
T Consensus 464 ~~l~~~l~~~k~~~~~~~~e~~~-------~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 464 EELEEELSEQKQRNETLEAELKS-------LKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp -------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccchhhhhhh-------hhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666666555555544431 11111111112344678888899999988888888888888877766663
Q ss_pred cccC----cchh---hHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhh
Q 001229 970 GAKG----HGSR---FAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANF 1042 (1119)
Q Consensus 970 g~~g----~~~~---f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~ 1042 (1119)
..+| ...| |.+..+++.-++| ..+-+.|+.||..|+.+|+..-+.-...+.+... ......+...
T Consensus 537 ~L~g~~~~~~trVL~lr~NP~~~~~~~k---~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~-----~~~~~~~~e~ 608 (722)
T PF05557_consen 537 TLQGEFNPSKTRVLHLRDNPTSKAEQIK---KSTLEALQAENEDLLARLRSLEEGNSQPVDAVPT-----SSLESQEKEI 608 (722)
T ss_dssp CCCT--BTTTEEEEEESS-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTTT---------------------HHH
T ss_pred hhccccCCCCceeeeeCCCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccCCCCCcccccc-----hhhhhhHHHH
Confidence 3333 2233 7888888877766 4788899999999999995321111111111111 1123344456
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1043 SGVQQENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1043 ~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
..++.+.+.+.|.+..||.=+..-+.....-+
T Consensus 609 ~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av 640 (722)
T PF05557_consen 609 AELKAELASAEKRNQRLKEVFKAKSQEFREAV 640 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888887777666665543
No 58
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.85 E-value=37 Score=45.12 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=24.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH-HHHHHhhhhhHH
Q 001229 1034 AASVAEANFSGVQQENEKLKKQ-IDKLKRKHKMEM 1067 (1119)
Q Consensus 1034 a~~~a~~~~~~~~qe~~k~~~q-~~klk~kh~~e~ 1067 (1119)
....|++|+..+.+|++||-.| .+||++--++|.
T Consensus 1683 g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~ 1717 (1758)
T KOG0994|consen 1683 GSQAARERAEQLRTEAEKLLGQANEKLDRLKDLEL 1717 (1758)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999987554 677777666663
No 59
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.81 E-value=47 Score=45.58 Aligned_cols=205 Identities=19% Similarity=0.278 Sum_probs=100.2
Q ss_pred HHhhhhhhcccceehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001229 874 ERERWTEMESEWICLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHR 953 (1119)
Q Consensus 874 er~~w~e~es~wi~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr 953 (1119)
.|..|-+.=.+++..-++++.++..-+.-.+.++.++.....=-+++.......+ ..+-+.|..+++...+|-.-+.
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 958 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN---KKAQDKVNDIKEKVKNIHGYMK 958 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888877777777777777776666666666665544443333333333322 3344455556666666666666
Q ss_pred HHHHhHHH-----HHHHHHHh-cccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhh
Q 001229 954 AIMEGVAE-----VKRAAAKA-GAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVR 1027 (1119)
Q Consensus 954 ~i~~gi~~-----vk~aaaka-g~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvr 1027 (1119)
.|.+-+.. +++.-.+- +. .+=+..|.+|+..+.. +.+.++++...++.+-|+-..-+.-.. +...
T Consensus 959 ~i~~y~~~~~~~qL~~~e~el~~~----~~~ie~le~e~~~l~~----~i~~l~kel~~~~~~kr~l~dnL~~~~-~~~~ 1029 (1311)
T TIGR00606 959 DIENKIQDGKDDYLKQKETELNTV----NAQLEECEKHQEKINE----DMRLMRQDIDTQKIQERWLQDNLTLRK-RENE 1029 (1311)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 66543322 11111110 00 1112333333333332 222233333333333333333333222 2222
Q ss_pred hhhHHHHH-----HHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCcccc-cCcccc
Q 001229 1028 LKEAEQAA-----SVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAESKLPESAL-QPLYRE 1090 (1119)
Q Consensus 1028 l~eaeea~-----~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~laes~lp~~~~-~~~~~~ 1090 (1119)
|++-+..+ ..|+..+..+++|..++..+++.|...+-.=+..++++-.+=.-.+..| .|-|.+
T Consensus 1030 l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~ 1098 (1311)
T TIGR00606 1030 LKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRD 1098 (1311)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHH
Confidence 33333222 2445555778888888888888887665554444444444333333333 345553
No 60
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.16 E-value=0.2 Score=57.17 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=27.5
Q ss_pred hHHHHHHHHcCCCcceeeecccccccccccc
Q 001229 152 GLPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 152 ~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
..|+|..+++--+|.|+.-|+||||||+||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 3468888899999999999999999999983
No 61
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.05 E-value=14 Score=45.65 Aligned_cols=133 Identities=23% Similarity=0.291 Sum_probs=88.4
Q ss_pred HHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--hcccC---cchhhHHHHHHHH
Q 001229 912 LEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAK--AGAKG---HGSRFAKSVAAEL 986 (1119)
Q Consensus 912 ~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaak--ag~~g---~~~~f~~~laae~ 986 (1119)
.||+==.+|+|=|-.= =||--.|-+.||+..--|...+-.+-+ .|+|. ++..=+..+-+|.
T Consensus 39 rEK~El~~LNDRLA~Y--------------IekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~ 104 (546)
T KOG0977|consen 39 REKKELQELNDRLAVY--------------IEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDET 104 (546)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHH
Confidence 4667778899976332 234444457778777777777654433 23332 1222222233333
Q ss_pred hhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhh----hhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001229 987 SALRVERDREREFLKKENKSLKIQLRDTAEAVHAAG----ELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDK 1058 (1119)
Q Consensus 987 s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aag----ellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~k 1058 (1119)
-.=|++=|.|-..|++|++.|+..+.++...+..|= +.+.||-+.|-....++.+...++.|...||+|+..
T Consensus 105 ~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~r 180 (546)
T KOG0977|consen 105 ARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSR 180 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455566777899999999999999987777664 468899999999999999999888777766665443
No 62
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.98 E-value=36 Score=37.73 Aligned_cols=191 Identities=21% Similarity=0.285 Sum_probs=107.0
Q ss_pred hHHHHHHHhhhhhhcccceehhhhhhh---hHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhh--------------
Q 001229 868 AEELEKERERWTEMESEWICLTDELRV---DIESSRRHAERVESELRLEKKVTEELDDALSRAVLG-------------- 930 (1119)
Q Consensus 868 ~~~~~~er~~w~e~es~wi~lt~elr~---~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~g-------------- 930 (1119)
..+|+..+.+-+.+|.++-+|+--++. +|+..-.+...+..-|..=.+-.+|...+++ .+.+
T Consensus 21 ~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k-~lE~r~~~~eeri~~lE~ 99 (237)
T PF00261_consen 21 EEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK-VLENREQSDEERIEELEQ 99 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHH
Confidence 455677777777888888877765542 3333333333333333333333333322221 1111
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHH
Q 001229 931 -HARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKI 1009 (1119)
Q Consensus 931 -har~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~ 1009 (1119)
...+-....+.+.||...-.|...+-..++.+...|..+-.+.. .|=.+|. .+....++|.+
T Consensus 100 ~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~------eLE~el~-----------~~~~~lk~lE~ 162 (237)
T PF00261_consen 100 QLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIK------ELEEELK-----------SVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH------HHHHHHH-----------HHHHHHHHhhh
Confidence 11122334555666666666666666666666665555544332 1222221 12223333333
Q ss_pred HhhhhHHHHh----hhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 001229 1010 QLRDTAEAVH----AAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1010 qlrdtaeav~----aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1076 (1119)
+-....+-.. -...|=-||++||--+..|+.+...++.+++++...|++.|.+|+.=-..|-+-|+|
T Consensus 163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~e 233 (237)
T PF00261_consen 163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNE 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222221111 135567789999999999999999999999999999999999998766666666654
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.86 E-value=22 Score=41.34 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHH
Q 001229 939 ADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAV 1018 (1119)
Q Consensus 939 ~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav 1018 (1119)
.-|.+.+.+|.++|-.++.-|...|.++.-.+ .|..-=.++|-+||..+..+ -+.+|++-..|+.||..--+.|
T Consensus 173 ~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~--~~D~~eL~~lr~eL~~~~~~----i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 173 EQLDELLPKLRERKAELEEELENLKQLVEEIE--SCDQEELEALRQELAEQKEE----IEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hcCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666666666655522 24444566677777776664 3334445555555555555555
Q ss_pred hhhhhhhhhhhhH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001229 1019 HAAGELLVRLKEA-EQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMK 1071 (1119)
Q Consensus 1019 ~aagellvrl~ea-eea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~ 1071 (1119)
.+.-+..-.|++. .+|-.+-++.-.--..|..+|+.+++.|.+.|.-.|..+.
T Consensus 247 ~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 247 EELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEEEe
Confidence 4444433333322 2222222233334567888888888888888877665443
No 64
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=88.71 E-value=39 Score=45.21 Aligned_cols=22 Identities=18% Similarity=0.136 Sum_probs=19.4
Q ss_pred cCCCcceeeecccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.|+=|=|+..-..++||-|.|-
T Consensus 85 rGaFGEV~lVr~k~t~~VYAMK 106 (1317)
T KOG0612|consen 85 RGAFGEVALVRHKSTEKVYAMK 106 (1317)
T ss_pred ccccceeEEEEeeccccchhHH
Confidence 6888888888999999999993
No 65
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.46 E-value=14 Score=37.53 Aligned_cols=123 Identities=18% Similarity=0.269 Sum_probs=78.2
Q ss_pred HHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHH
Q 001229 907 ESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAEL 986 (1119)
Q Consensus 907 ~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~ 986 (1119)
+.|+..=+.=.++....++.+..-.-.+.+.+.+.|++|-.=|-+|-..+.-|..||..+.... .+|
T Consensus 9 ~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~-------------~~~ 75 (132)
T PF07926_consen 9 QSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQ-------------QEI 75 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------------HHH
Confidence 3344443444455566666666667777888899999999999999999999999888766543 333
Q ss_pred hhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001229 987 SALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKL 1059 (1119)
Q Consensus 987 s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~kl 1059 (1119)
..|+.+.+.=+.-| ++ +=+..-.+=..-+.-+.-++.|..++...|.=|..|||.|
T Consensus 76 ~~l~~~~~~a~~~l---------------~~--~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 76 NELKAEAESAKAEL---------------EE--SEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHH---------------HH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333222111111 00 0111223334445566677888889999999999998865
No 66
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.30 E-value=45 Score=44.55 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh----------------cccCcchhhHHH
Q 001229 919 ELDDALSRAVLGHARMVE-HYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKA----------------GAKGHGSRFAKS 981 (1119)
Q Consensus 919 el~~al~~a~~ghar~~e-~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaaka----------------g~~g~~~~f~~~ 981 (1119)
|..++...-+.--+-.+. -..+++++|.+|-.+-.++.|+..-+.+-.-|+ -.-++ .+=|.-
T Consensus 366 ~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~-~~~i~~ 444 (1293)
T KOG0996|consen 366 EKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA-RIEIQK 444 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh-HhHHHH
Confidence 344444444444444555 555666777777776666666655443332222 22222 245677
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhh--------hhhhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 001229 982 VAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAG--------ELLVRLKEAEQAASVAEANFSGVQQENEKLK 1053 (1119)
Q Consensus 982 laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aag--------ellvrl~eaeea~~~a~~~~~~~~qe~~k~~ 1053 (1119)
+--||..|....++|++-|.+.-.. |.+++++..+.= -+|-++.+|..-+.+|+..+-.+.+-.+.+.
T Consensus 445 ~~~ei~~L~~~~~~~~~~l~e~~~~----l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~ 520 (1293)
T KOG0996|consen 445 CQTEIEQLEELLEKEERELDEILDS----LKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGL 520 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999988888888887776444 456667766643 2567899999999999999999999999999
Q ss_pred HHHHHHHhhhhh
Q 001229 1054 KQIDKLKRKHKM 1065 (1119)
Q Consensus 1054 ~q~~klk~kh~~ 1065 (1119)
++.+.||.++..
T Consensus 521 ~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 521 KKVEELKGKLLA 532 (1293)
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
No 67
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=88.15 E-value=39 Score=44.94 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=51.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 001229 1019 HAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1019 ~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1076 (1119)
--|+++|-+++||+.-++-|+.+|..+...++.-..||++-.+..+.=|..++.+|..
T Consensus 1429 ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~ 1486 (1758)
T KOG0994|consen 1429 AEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQ 1486 (1758)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3478899999999999999999999999888888999999999999999999999954
No 68
>PRK06620 hypothetical protein; Validated
Probab=88.01 E-value=0.24 Score=53.71 Aligned_cols=51 Identities=29% Similarity=0.375 Sum_probs=33.5
Q ss_pred CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCC---cceeeeccccccccccccC
Q 001229 129 ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYN---VSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 129 ~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN---~tIfAYGQTGSGKTyTM~G 183 (1119)
...|+||..+...++ ...|..+.. +.+. -|+| -.++-||++|+||||.+..
T Consensus 10 ~~~~tfd~Fvvg~~N-~~a~~~~~~-~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 10 SSKYHPDEFIVSSSN-DQAYNIIKN-WQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCCchhhEecccH-HHHHHHHHH-HHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 356899987764444 556655542 2221 1444 3589999999999998853
No 69
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.92 E-value=32 Score=42.20 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=17.7
Q ss_pred hhhhhhhHHHhhHHHHHHHHHHhHH
Q 001229 889 TDELRVDIESSRRHAERVESELRLE 913 (1119)
Q Consensus 889 t~elr~~le~~r~~~ek~~~el~~e 913 (1119)
.++++.+++.....++.++.+++.-
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l 239 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEEL 239 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777776666544
No 70
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.91 E-value=44 Score=46.01 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=21.8
Q ss_pred CCccCCCC--cccccccccCCCCceEeEeeecCCCCCcHH
Q 001229 380 EDVIYRCS--CLTHLLRESLGGNAKLTVVCNISPDNKDVG 417 (1119)
Q Consensus 380 ~hVPYRDS--KLTrLLqDSLGGNSkT~mIa~ISPs~~~~e 417 (1119)
..++|+-. .|+.+|+++|-.-+... |..++-+..+++
T Consensus 195 P~Ls~~~~~~~l~~~l~~~l~~l~~~~-i~~l~e~~~~~~ 233 (1353)
T TIGR02680 195 PQLSKKPDEGVLSDALTEALPPLDDDE-LTDVADALEQLD 233 (1353)
T ss_pred CCCCCCCChHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHH
Confidence 45666555 59999999997754433 444433333333
No 71
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.77 E-value=50 Score=40.96 Aligned_cols=118 Identities=26% Similarity=0.300 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchh-hHHHHHHHHhhhhhhhHH----HH------HHHHHhhHHHH
Q 001229 940 DLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSR-FAKSVAAELSALRVERDR----ER------EFLKKENKSLK 1008 (1119)
Q Consensus 940 ~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~-f~~~laae~s~lr~erek----e~------~~~~~en~~l~ 1008 (1119)
+.+++...+-.....++..++++|.--.++---....+ =+.+|-.||-..|.+-++ |. ..|..+...++
T Consensus 271 ~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r 350 (522)
T PF05701_consen 271 EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTR 350 (522)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Confidence 56666677777777777777777776555432222111 223333444333332221 10 11333333333
Q ss_pred HHhhhhHHHHhh--------hhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001229 1009 IQLRDTAEAVHA--------AGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKR 1061 (1119)
Q Consensus 1009 ~qlrdtaeav~a--------agellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~ 1061 (1119)
.+| ++|++ .-+|-.-|.++-.=+-.|+..+..+.+|..+++.+++..|-
T Consensus 351 ~eL----ea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 351 SEL----EAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHH----HHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 22222 22355555555555555666677777777777777777654
No 72
>PRK03918 chromosome segregation protein; Provisional
Probab=87.68 E-value=75 Score=41.34 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHhhcCCCcccccCccccCc
Q 001229 1063 HKMEMITMKQYLAESKLPESALQPLYREDS 1092 (1119)
Q Consensus 1063 h~~e~~t~~~~laes~lp~~~~~~~~~~~~ 1092 (1119)
.+.+|..+++.+.+-.-+ ...+|.|...-
T Consensus 417 ~~~~i~eL~~~l~~L~~~-~~~Cp~c~~~L 445 (880)
T PRK03918 417 LKKEIKELKKAIEELKKA-KGKCPVCGREL 445 (880)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCCCCCcC
Confidence 345677777777654432 24677766543
No 73
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.62 E-value=16 Score=39.59 Aligned_cols=98 Identities=28% Similarity=0.364 Sum_probs=64.1
Q ss_pred HHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHH
Q 001229 953 RAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAE 1032 (1119)
Q Consensus 953 r~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eae 1032 (1119)
.+..++|.|.++-+--.- .-+.|+++|.-||--||. .-.-|..+|++|..|.|-+ |
T Consensus 39 a~L~~e~~~L~~q~~s~Q---qal~~aK~l~eEledLk~----~~~~lEE~~~~L~aq~rql-----------------E 94 (193)
T PF14662_consen 39 AQLAEEITDLRKQLKSLQ---QALQKAKALEEELEDLKT----LAKSLEEENRSLLAQARQL-----------------E 94 (193)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-----------------H
Confidence 334445555544433221 336789999999888887 4455777888888776654 2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh---hHHHHHHHHH
Q 001229 1033 QAASVAEANFSGVQQENEKLKKQIDKLKRKHK---MEMITMKQYL 1074 (1119)
Q Consensus 1033 ea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~---~e~~t~~~~l 1074 (1119)
.--..-.......++||.|+.-++|+||++.+ ++..+|+..|
T Consensus 95 kE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 95 KEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 22233334567889999999999999999876 3455555444
No 74
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.45 E-value=0.33 Score=60.36 Aligned_cols=51 Identities=25% Similarity=0.453 Sum_probs=34.5
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
..|+||..+-... +..+|. .+..+++..-.+||. ||-||.+|+||||-+.+
T Consensus 283 ~~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 5699998664343 344453 333455543346776 89999999999999865
No 75
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.84 E-value=0.4 Score=52.58 Aligned_cols=49 Identities=8% Similarity=0.197 Sum_probs=31.7
Q ss_pred CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 129 ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 129 ~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
+..|+||.-+.. .+..++..+.. ++ .......++-||++|+||||.+.+
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~l~~-~~---~~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAALQN-AL---RQEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCcCCccccccC--ccHHHHHHHHH-HH---hCCCCCeEEEECCCCCCHHHHHHH
Confidence 346788876654 45556544332 21 122335789999999999999854
No 76
>PRK12377 putative replication protein; Provisional
Probab=86.15 E-value=0.52 Score=52.58 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=36.5
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
..+||........|..++.. +..+++.+..+. ..++-||++|+||||.+.+
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred cCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 34788765555666666654 446777776654 4688899999999999865
No 77
>PRK09087 hypothetical protein; Validated
Probab=86.07 E-value=0.4 Score=52.48 Aligned_cols=48 Identities=23% Similarity=0.166 Sum_probs=32.3
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
..|+||.-+..+++ ..+|.. +.....-.+..++-||++||||||-+..
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHHH
Confidence 46899987764444 446663 3332222355589999999999998853
No 78
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.91 E-value=1e+02 Score=40.81 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=12.8
Q ss_pred Ccceeeecccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyT 180 (1119)
++..+-+|+||||||.-
T Consensus 25 ~gi~lI~G~nGsGKSSI 41 (908)
T COG0419 25 SGIFLIVGPNGAGKSSI 41 (908)
T ss_pred CCeEEEECCCCCcHHHH
Confidence 44456789999999843
No 79
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=85.58 E-value=0.49 Score=56.76 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=34.0
Q ss_pred CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 129 ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 129 ~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
+..|+||.-+-. ..+...|..+. .+++. -..||. +|-||++|+||||.|..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 356999987643 44555665433 33332 122665 99999999999999854
No 80
>PRK05642 DNA replication initiation factor; Validated
Probab=85.57 E-value=0.56 Score=51.43 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=29.5
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHc---CC-CcceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALA---GY-NVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~---Gy-N~tIfAYGQTGSGKTyTM~G 183 (1119)
..|+||.-+.. . +..+ ...+....+ ++ ...++-||++|+||||-+.+
T Consensus 14 ~~~tfdnF~~~-~-~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPG-A-NAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcC-C-hHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 46899987743 2 2222 333333332 22 24688999999999998754
No 81
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=85.21 E-value=51 Score=44.88 Aligned_cols=132 Identities=16% Similarity=0.231 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHH
Q 001229 931 HARMVEHYADLQEKYN-DLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKI 1009 (1119)
Q Consensus 931 har~~e~y~~l~e~~~-~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~ 1009 (1119)
+.++=+.|..|++.+. ++-+++..+.+--..+|-+.++.-..=....|..-+..++.++..+ ....+.
T Consensus 415 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~-----------~~~a~~ 483 (1201)
T PF12128_consen 415 REQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKR-----------LEQAQE 483 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHH-----------HHHHHH
Confidence 5555556666655555 3333333444444444444443332222334444455544444432 222222
Q ss_pred HhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 001229 1010 QLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1010 qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1076 (1119)
++..-..+|..|- -.+++|..+-..|+.....++++.+++..++++|.+.-...=.||-.||-+
T Consensus 484 ~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~ 547 (1201)
T PF12128_consen 484 QQNQAQQAVEELQ---AEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRK 547 (1201)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHh
Confidence 3322222222222 234445555555666677778888888888888888888888888888843
No 82
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.13 E-value=0.53 Score=56.70 Aligned_cols=50 Identities=28% Similarity=0.436 Sum_probs=31.6
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.|+||.-+... ++...|.. +..++..-=..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 48999866444 45556633 3344332111244 488999999999999854
No 83
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=84.91 E-value=24 Score=37.25 Aligned_cols=99 Identities=15% Similarity=0.206 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhh
Q 001229 948 LVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVR 1027 (1119)
Q Consensus 948 l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvr 1027 (1119)
|-.|+.+|.++|++..++ -+|.-.++.+-|++-+--+.|-..++.+=||.++|
T Consensus 39 Le~R~~~I~~~L~~Ae~~-----------------k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a---------- 91 (155)
T PRK06569 39 FNNRQTNIQDNITQADTL-----------------TIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLES---------- 91 (155)
T ss_pred HHHHHHHHHhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 447888899998886553 34555667777777777777888888777777765
Q ss_pred hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 001229 1028 LKEAEQAASVAEANF-SGVQQENEKLKKQIDKLKRKHKMEMITMKQYLA 1075 (1119)
Q Consensus 1028 l~eaeea~~~a~~~~-~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~la 1075 (1119)
||+......+.+. ....|+.++..+-+|++|+.++.|++.|-.-++
T Consensus 92 --~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 92 --EFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNII 138 (155)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2222222222222 356788999999999999999999999988887
No 84
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=84.79 E-value=65 Score=35.60 Aligned_cols=142 Identities=14% Similarity=0.197 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---------------HHHhHHHHHHHHHHhcccCcchhhHHHH----HHHHhhhhh
Q 001229 931 HARMVEHYADLQEKYNDLVSRHRA---------------IMEGVAEVKRAAAKAGAKGHGSRFAKSV----AAELSALRV 991 (1119)
Q Consensus 931 har~~e~y~~l~e~~~~l~~~hr~---------------i~~gi~~vk~aaakag~~g~~~~f~~~l----aae~s~lr~ 991 (1119)
...|+-.-|.+|+.|-.-|.+.-. +..+...|.-.....| +....|++.| ..+|+.++.
T Consensus 24 l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a--~~H~~~a~~l~~~v~~~l~~~~~ 101 (251)
T cd07653 24 YGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIA--GQHELIAENLNSNVCKELKTLIS 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777766655332 2333444444333332 1123555544 578899999
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhh-hHHHHHHHHHH----------hhhhhHHHHHHHHHHHHHHH
Q 001229 992 ERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLK-EAEQAASVAEA----------NFSGVQQENEKLKKQIDKLK 1060 (1119)
Q Consensus 992 ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~-eaeea~~~a~~----------~~~~~~qe~~k~~~q~~klk 1060 (1119)
+.+++|+-+..+...|+..+.++-..|.-|-.--..+- |++.|-..-++ ....+++...+...++++.+
T Consensus 102 ~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~ 181 (251)
T cd07653 102 ELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAK 181 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887777664 55544322221 11223344444455555666
Q ss_pred hhhhhHHHHHHHHH
Q 001229 1061 RKHKMEMITMKQYL 1074 (1119)
Q Consensus 1061 ~kh~~e~~t~~~~l 1074 (1119)
..|..-|...|.+.
T Consensus 182 ~~Y~~~l~~~N~~~ 195 (251)
T cd07653 182 NEYAAQLQKFNKEQ 195 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666666553
No 85
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.65 E-value=0.42 Score=57.89 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCcceeeeccccccccccccC
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
..+..++..-+|.|+.-|+||||||.||+.
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 456778888999999999999999999976
No 86
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=84.59 E-value=0.6 Score=47.17 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=19.9
Q ss_pred HHHHcC-CCcceeeeccccccccccccC
Q 001229 157 KNALAG-YNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 157 ~~vL~G-yN~tIfAYGQTGSGKTyTM~G 183 (1119)
+.+-.+ ....++..|+||||||++|.+
T Consensus 17 ~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 17 NSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 333333 356677789999999999975
No 87
>PRK11637 AmiB activator; Provisional
Probab=84.32 E-value=98 Score=37.22 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=10.7
Q ss_pred hhhhhhHHHhhHHHHHHHHHHh
Q 001229 890 DELRVDIESSRRHAERVESELR 911 (1119)
Q Consensus 890 ~elr~~le~~r~~~ek~~~el~ 911 (1119)
++++.+|+..+.-.+.++.++.
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444
No 88
>PRK06526 transposase; Provisional
Probab=83.96 E-value=0.53 Score=52.55 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=26.1
Q ss_pred cCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 138 LDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 138 Fd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
+.+.-++..+..-...+.++ .|.| |+.||++|+||||.+.+
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 33445555454433333332 3444 78999999999999875
No 89
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=83.83 E-value=1.5e+02 Score=38.69 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=45.0
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHH---HHHHHHhhhhhHHHHHHHHHhhcCCCcc
Q 001229 1018 VHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKK---QIDKLKRKHKMEMITMKQYLAESKLPES 1082 (1119)
Q Consensus 1018 v~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~---q~~klk~kh~~e~~t~~~~laes~lp~~ 1082 (1119)
+.+=.++-+|+..-|..++.-.+....++-|.++|-. .+++=|-.-+++|..|...|.+...+-.
T Consensus 540 ~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~ 607 (775)
T PF10174_consen 540 LRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLA 607 (775)
T ss_pred HHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchh
Confidence 5555678888888888777777777777777777775 4455555566778888777766555443
No 90
>PRK08116 hypothetical protein; Validated
Probab=83.60 E-value=0.78 Score=51.53 Aligned_cols=52 Identities=31% Similarity=0.464 Sum_probs=35.1
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHc--CCCcceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALA--GYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~--GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
..++||.-. .+..+...|.. +...++.+.. +.|..++-||.+|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 457888754 34555555543 4466666654 3455699999999999998754
No 91
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.39 E-value=0.69 Score=54.52 Aligned_cols=52 Identities=27% Similarity=0.457 Sum_probs=31.2
Q ss_pred CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 129 ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 129 ~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
+..|+||...- +..+...|.. +..+.+.--..+| .++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 35689998443 3445555543 2233333111234 478899999999998743
No 92
>PRK07952 DNA replication protein DnaC; Validated
Probab=83.02 E-value=0.76 Score=51.18 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=34.2
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
...+||........|..++..+. ..++.+..|+ ..++-||.+|+||||.+.+
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~-~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKAR-QYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred cCCccccccCCCchHHHHHHHHH-HHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 35678775444455666665433 4555544443 3688999999999998865
No 93
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=82.85 E-value=1 Score=51.69 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=27.8
Q ss_pred CeecCCCCChHHHHHHhhHHHHHHHHc-CCCcceeeeccccccccccc
Q 001229 135 DSVLDSNSNQEDIFQVVGLPLVKNALA-GYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 135 D~VFd~~asQeeVY~~v~~pLV~~vL~-GyN~tIfAYGQTGSGKTyTM 181 (1119)
|++.+.-...++-++.+.. .+..++. +....++-||++|+|||+++
T Consensus 11 ~~~p~~l~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3333333334444444442 3344443 45678999999999999986
No 94
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.70 E-value=64 Score=33.46 Aligned_cols=136 Identities=21% Similarity=0.316 Sum_probs=94.3
Q ss_pred hhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001229 891 ELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAG 970 (1119)
Q Consensus 891 elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag 970 (1119)
-||+|.+..-.+++.++..++.=..+.. +.=+.+..|+-|...|=..=..+.+-+.++|.++--+.
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~--------------~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENE--------------QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4788888888888877766654333333 33456788888888888888888889999888877665
Q ss_pred ccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHH
Q 001229 971 AKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENE 1050 (1119)
Q Consensus 971 ~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~ 1050 (1119)
..+.- +| .|..-+.-|.-+|-.+=.. ..+..=.|++|...+-..+.+...++++..
T Consensus 70 ~~~~~--------~E-------------~l~rriq~LEeele~ae~~---L~e~~ekl~e~d~~ae~~eRkv~~le~~~~ 125 (143)
T PF12718_consen 70 KRKSN--------AE-------------QLNRRIQLLEEELEEAEKK---LKETTEKLREADVKAEHFERKVKALEQERD 125 (143)
T ss_pred HHHHh--------HH-------------HHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence 54421 11 2233333333333222222 344445789999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 001229 1051 KLKKQIDKLKRKHK 1064 (1119)
Q Consensus 1051 k~~~q~~klk~kh~ 1064 (1119)
..-+.++.|..||+
T Consensus 126 ~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 126 QWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999886
No 95
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.68 E-value=1.2 Score=51.75 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=28.5
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHH-cCCCcceeeeccccccccccc
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNAL-AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL-~GyN~tIfAYGQTGSGKTyTM 181 (1119)
|..|.+.+.-..-++-++.+.. .+..++ .+....++-||++|+|||+++
T Consensus 23 l~~~~~P~~l~~Re~e~~~l~~-~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 23 LEPDYVPENLPHREEQIEELAF-ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCCcCCCCCCHHHHHHHHHH-HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3333333333334444444443 333344 345567899999999999986
No 96
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.53 E-value=95 Score=35.34 Aligned_cols=196 Identities=21% Similarity=0.307 Sum_probs=96.3
Q ss_pred HHHHHHHhhhhhhcccceehhhhh------hhhHHHhhHHHHHHHHHHhHHHh-hHHHHHHHHHHHH-----h----hhh
Q 001229 869 EELEKERERWTEMESEWICLTDEL------RVDIESSRRHAERVESELRLEKK-VTEELDDALSRAV-----L----GHA 932 (1119)
Q Consensus 869 ~~~~~er~~w~e~es~wi~lt~el------r~~le~~r~~~ek~~~el~~ek~-c~eel~~al~~a~-----~----gha 932 (1119)
..++.|...-..+|+.|-.|-.+| |++|+. .++.++.||.-=|+ +.+|+.+.....- . .+.
T Consensus 89 ~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~---~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~ 165 (312)
T PF00038_consen 89 RKYEEELAERKDLEEELESLRKDLDEETLARVDLEN---QIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSS 165 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSTT---------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH---HHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccc
Confidence 344555555555565554443332 122222 24445555554433 4444554332221 1 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhh---hHHHHHHHHHhhHHHHH
Q 001229 933 RMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVE---RDREREFLKKENKSLKI 1009 (1119)
Q Consensus 933 r~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~e---reke~~~~~~en~~l~~ 1009 (1119)
-+=.--.|+...|...+.+++.-+++.=.-|=...++++.-. +.-+.++-.|+..+|.. -+.|-.-|+..|.+|..
T Consensus 166 dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~-~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 166 DLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKS-SEELESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhhhhhhhhhhccccccccccccccc-ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 222233567778888888888777765555544444443331 23444555555555543 23355557778888888
Q ss_pred HhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1010 QLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEK---LKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1010 qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k---~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
+|+|+=.-.+ ..+..-...+..-+.....+.++.+. -|+++-.+|=.-++||.|-..+|
T Consensus 245 ~l~~le~~~~------~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 245 QLRELEQRLD------EEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH------HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8877632211 11222222222222222222222221 24555566778889999999988
No 97
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=82.24 E-value=0.78 Score=54.95 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=31.3
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
..|+||.-... ..+...|..+. .+.+.--..|| .+|-||++|+||||.+..
T Consensus 117 ~~~tfd~fv~g-~~n~~a~~~~~-~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 117 PKYTFDNFVVG-KSNRLAHAAAL-AVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCcccccccC-CCcHHHHHHHH-HHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 56899984432 34454554432 33333212344 488899999999999854
No 98
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=82.12 E-value=1 Score=48.08 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=31.2
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeecccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
..|+||.... + .+..++..+-. + +..+....|+-||++|+||||.+.
T Consensus 10 ~~~~~~~~~~-~-~~~~~~~~l~~-~---~~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYA-G-GNAELLAALRQ-L---AAGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCc-C-CcHHHHHHHHH-H---HhcCCCCeEEEECCCCCCHHHHHH
Confidence 4578887763 2 34445544332 1 235667789999999999999874
No 99
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=81.92 E-value=0.98 Score=42.92 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=18.2
Q ss_pred HHHHcCCCcceeeeccccccccccc
Q 001229 157 KNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 157 ~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..+.......++.+|++|+|||+++
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333334556889999999999866
No 100
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=81.72 E-value=2.4e+02 Score=39.33 Aligned_cols=16 Identities=38% Similarity=0.570 Sum_probs=12.2
Q ss_pred eeeecccccccccccc
Q 001229 167 LLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM~ 182 (1119)
++--|++|||||.+|-
T Consensus 27 ~~~~G~NGsGKS~~ld 42 (1353)
T TIGR02680 27 LLLRGNNGAGKSKVLE 42 (1353)
T ss_pred EEEECCCCCcHHHHHH
Confidence 4455999999998773
No 101
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=81.65 E-value=1.3e+02 Score=39.87 Aligned_cols=165 Identities=27% Similarity=0.297 Sum_probs=102.3
Q ss_pred HHHHHHh-HHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHH
Q 001229 905 RVESELR-LEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVA 983 (1119)
Q Consensus 905 k~~~el~-~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~la 983 (1119)
++..||+ .||+-..|++ +|+-++.-|++-.+-|--+-|--++++.-|+...+--.+.+-- .|-++ +-++-=+
T Consensus 429 qq~~eled~~K~L~~E~e-kl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~-----iknln-k~L~~r~ 501 (1195)
T KOG4643|consen 429 QQLAELEDLEKKLQFELE-KLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQ-----IKNLN-KSLNNRD 501 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-HHHHHHH
Confidence 3444443 5677777754 6778899999998888777777788888887765444443322 23333 3344446
Q ss_pred HHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhh--------------hHHHHHHHHHHhhhhhHHHH
Q 001229 984 AELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLK--------------EAEQAASVAEANFSGVQQEN 1049 (1119)
Q Consensus 984 ae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~--------------eaeea~~~a~~~~~~~~qe~ 1049 (1119)
-|||-|-+..+++-+ +.+-..+|+.-+-+=.+---++|+=|. ..++--..-+.+-...++..
T Consensus 502 ~elsrl~a~~~elke----Q~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~ 577 (1195)
T KOG4643|consen 502 LELSRLHALKNELKE----QYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIH 577 (1195)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Confidence 677776665555433 444455566555554444444444433 22333333444555666667
Q ss_pred HHHHHHHHHHHh----hhhhHHHHHHHHHhhcCCC
Q 001229 1050 EKLKKQIDKLKR----KHKMEMITMKQYLAESKLP 1080 (1119)
Q Consensus 1050 ~k~~~q~~klk~----kh~~e~~t~~~~laes~lp 1080 (1119)
.+++|=||+|+- |-+-|+.-||||+++-++|
T Consensus 578 ~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~ 612 (1195)
T KOG4643|consen 578 NELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIP 612 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCc
Confidence 788888999862 4456888899999998865
No 102
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.54 E-value=34 Score=37.00 Aligned_cols=100 Identities=22% Similarity=0.341 Sum_probs=69.2
Q ss_pred hhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001229 888 LTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAA 967 (1119)
Q Consensus 888 lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaa 967 (1119)
+-+++++-|.++..+.+-.- +--+..||+. ..|+.++-+...+|++...+|-.++..+..-++.++|..+
T Consensus 89 vrde~~~~l~~y~~l~~s~~---------~f~~rk~l~~-e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 89 VRDEYRMTLDAYQTLYESSI---------AFGMRKALQA-EQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888776655421 2344445554 4679999999999999999998888877777777665432
Q ss_pred HhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhh
Q 001229 968 KAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRD 1013 (1119)
Q Consensus 968 kag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrd 1013 (1119)
..++.+ .....-|-.+||++|+.|+.||..
T Consensus 159 ------------e~~~~~----~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 159 ------------ELRQEE----EKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred ------------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222222 233455888999999999999863
No 103
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=81.03 E-value=18 Score=44.49 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=65.3
Q ss_pred HHHHHHhhHHHHHHhhhhH-HHHhhhhh---hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001229 997 REFLKKENKSLKIQLRDTA-EAVHAAGE---LLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQ 1072 (1119)
Q Consensus 997 ~~~~~~en~~l~~qlrdta-eav~aage---llvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~ 1072 (1119)
+.++.+....|-.||...= -||+=+.| |..||..||+.-..-.+....+.+....|..+++-.++.|+..|.+|-.
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5567788888877776542 45555555 7889999999887777888889999999999999999999999999998
Q ss_pred HHhh
Q 001229 1073 YLAE 1076 (1119)
Q Consensus 1073 ~lae 1076 (1119)
+||.
T Consensus 495 HLas 498 (518)
T PF10212_consen 495 HLAS 498 (518)
T ss_pred HHHH
Confidence 8864
No 104
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=81.01 E-value=18 Score=39.42 Aligned_cols=116 Identities=24% Similarity=0.310 Sum_probs=76.1
Q ss_pred HHHHH-HhhhhhhcccceehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001229 870 ELEKE-RERWTEMESEWICLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDL 948 (1119)
Q Consensus 870 ~~~~e-r~~w~e~es~wi~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l 948 (1119)
+|.++ -..+.|.=-=-.+.-||.||-++++..+-|- -.+==+..||| |-.|..||--.++.|+-+-.+|
T Consensus 135 ElIRqvs~scveRGlll~rvRDEIrMt~aAYqtlyeS---------svAfGmRKALq-ae~ek~~~~~~~k~le~~k~~L 204 (259)
T KOG4001|consen 135 ELIRQVSVSCVERGLLLVRVRDEIRMTFAAYQTLYES---------SVAFGMRKALQ-AENEKTRATTEWKVLEDKKKEL 204 (259)
T ss_pred HHHHHcchhHHhcceeEEEehHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-HhhhhhHHHHHHHHHhhhHHHH
Confidence 34444 4444444445677889999999999887543 22333455655 4567788888888888776665
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhH-HHHHHHHHhhHHHHHHhh
Q 001229 949 VSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERD-REREFLKKENKSLKIQLR 1012 (1119)
Q Consensus 949 ~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ere-ke~~~~~~en~~l~~qlr 1012 (1119)
- .-|++.|+-.+-+-++..+-| ++-..|= .|-+|||+-|+-|+.||-
T Consensus 205 e-------~~ia~~k~K~e~~e~r~~E~r----------~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 205 E-------LKIAQLKKKLETDEIRSEEER----------EIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred H-------HHHHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 357888888777766664411 1111111 277899999999999984
No 105
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.77 E-value=1.4e+02 Score=40.21 Aligned_cols=99 Identities=29% Similarity=0.312 Sum_probs=72.5
Q ss_pred HHHhHHHHHHHHHH--hcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHH
Q 001229 955 IMEGVAEVKRAAAK--AGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAE 1032 (1119)
Q Consensus 955 i~~gi~~vk~aaak--ag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eae 1032 (1119)
|.+-|+-+...-+| ++++-++ +=+..+--.||- -|+|.+-+++|-+.|-.++.++-+. +-|+=-|++||+
T Consensus 912 ~~~~~~~l~~~i~k~~~~i~~s~-~~i~k~q~~l~~----le~~~~~~e~e~~~L~e~~~~~~~k---~~E~~~~~~e~~ 983 (1293)
T KOG0996|consen 912 INEQLDKLEADIAKLTVAIKTSD-RNIAKAQKKLSE----LEREIEDTEKELDDLTEELKGLEEK---AAELEKEYKEAE 983 (1293)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCc-ccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHH
Confidence 33444444333333 4555544 223333334443 3566777888999999999988776 668999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001229 1033 QAASVAEANFSGVQQENEKLKKQIDKLKR 1061 (1119)
Q Consensus 1033 ea~~~a~~~~~~~~qe~~k~~~q~~klk~ 1061 (1119)
++.--+++...++.++.+..+|+++.||.
T Consensus 984 ~~~~E~k~~~~~~k~~~e~i~k~~~~lk~ 1012 (1293)
T KOG0996|consen 984 ESLKEIKKELRDLKSELENIKKSENELKA 1012 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998
No 106
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.44 E-value=34 Score=44.37 Aligned_cols=40 Identities=28% Similarity=0.437 Sum_probs=27.4
Q ss_pred hhhhhhH----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 001229 1025 LVRLKEA----EQAASVAEANFSGVQQENEKLKKQIDKLKRKHK 1064 (1119)
Q Consensus 1025 lvrl~ea----eea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~ 1064 (1119)
|||||.- -+--.-+++-+....+|++.|+++-|+|+++-+
T Consensus 384 lVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d 427 (1243)
T KOG0971|consen 384 LVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELD 427 (1243)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7888852 233344556666667788888888888888764
No 107
>PLN02939 transferase, transferring glycosyl groups
Probab=80.41 E-value=42 Score=44.47 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=27.6
Q ss_pred HhcccCcchhhHHHHH--HHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhH
Q 001229 968 KAGAKGHGSRFAKSVA--AELSALRVERDREREFLKKENKSLKIQLRDTA 1015 (1119)
Q Consensus 968 kag~~g~~~~f~~~la--ae~s~lr~ereke~~~~~~en~~l~~qlrdta 1015 (1119)
.|.+++-++||+.|-+ .+++.|+.| -|-+.-..||.-|--++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 313 (977)
T PLN02939 270 DASLRELESKFIVAQEDVSKLSPLQYD------CWWEKVENLQDLLDRAT 313 (977)
T ss_pred HHHHHHHHHHHHhhhhhhhhccchhHH------HHHHHHHHHHHHHHHHH
Confidence 3556666888877665 578888885 26666666776554443
No 108
>PRK08939 primosomal protein DnaI; Reviewed
Probab=80.39 E-value=0.95 Score=51.94 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=33.7
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHHcC-CCcceeeeccccccccccccC
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAG-YNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL~G-yN~tIfAYGQTGSGKTyTM~G 183 (1119)
.+||.+-..+..+..++..+ ...++....| ..-.|+-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 45555433333566677643 5666665543 234699999999999999876
No 109
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.69 E-value=1.2e+02 Score=34.60 Aligned_cols=148 Identities=16% Similarity=0.228 Sum_probs=81.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHH
Q 001229 923 ALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAA-KAGAKGHGSRFAKSVAAELSALRVERDREREFLK 1001 (1119)
Q Consensus 923 al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaa-kag~~g~~~~f~~~laae~s~lr~ereke~~~~~ 1001 (1119)
.+.-+...+..+=.+..-|++...-|-.-|.. .|.++..-.+ ...+.. ..-|-..|++-|..+|++-|......+
T Consensus 111 ~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee---Ei~~L~~~~~~~~~~e~-~~~~~~dL~~~L~eiR~~ye~~~~~~~ 186 (312)
T PF00038_consen 111 DLDEETLARVDLENQIQSLKEELEFLKQNHEE---EIEELREQIQSSVTVEV-DQFRSSDLSAALREIRAQYEEIAQKNR 186 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTSTT-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh---hhhhhhhccccccceee-cccccccchhhhhhHHHHHHHHHhhhh
Confidence 34444444555555566777777777777764 4455444333 111111 113455688888888888776665544
Q ss_pred HhhH-HHHHHhhhhHHHHhhhhhhhhh----hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1002 KENK-SLKIQLRDTAEAVHAAGELLVR----LKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1002 ~en~-~l~~qlrdtaeav~aagellvr----l~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
.+.. -.+.|+.+--..+...++-+-+ +++....+...+.....++..++.|.++|.-|...|.++...+...+
T Consensus 187 ~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i 264 (312)
T PF00038_consen 187 EELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEI 264 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 4432 2233443333333333333332 34455566667777777888888888899888888888777666555
No 110
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=79.40 E-value=2e+02 Score=36.96 Aligned_cols=143 Identities=25% Similarity=0.253 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhh
Q 001229 916 VTEELDDALSRAVLGHARMVEH----YADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRV 991 (1119)
Q Consensus 916 c~eel~~al~~a~~ghar~~e~----y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ 991 (1119)
--++|..+|+++=+.-||==.+ .-|||-+| -+-.|+-.+-|..|=- -.+ .=.|=|.+|-+=|+.--.
T Consensus 588 qv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRl---qaaE~R~eel~q~v~~-----TTr-PLlRQIE~lQ~tl~~~~t 658 (961)
T KOG4673|consen 588 QVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRL---QAAERRCEELIQQVPE-----TTR-PLLRQIEALQETLSKAAT 658 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccc-----ccc-HHHHHHHHHHHHHhhhhh
Confidence 3467777777776666653222 23344333 3444555555555410 000 113567777777777666
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhh-------------hHHHHHHH-----HHHhhhhhHHHHHH--
Q 001229 992 ERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLK-------------EAEQAASV-----AEANFSGVQQENEK-- 1051 (1119)
Q Consensus 992 ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~-------------eaeea~~~-----a~~~~~~~~qe~~k-- 1051 (1119)
--|||-+.|-+-.-.-|.+||--.+--|++-+=|.|+| +||.+.-. +..|+.+.+||+-.
T Consensus 659 awereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~q 738 (961)
T KOG4673|consen 659 AWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQ 738 (961)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77777777776666668888877776688877777765 56666322 22344444444444
Q ss_pred ------------HHHHHHHHHhhhhhHH
Q 001229 1052 ------------LKKQIDKLKRKHKMEM 1067 (1119)
Q Consensus 1052 ------------~~~q~~klk~kh~~e~ 1067 (1119)
+-..+-++|++|+++.
T Consensus 739 eE~~~l~~r~~~le~e~r~~k~~~~q~l 766 (961)
T KOG4673|consen 739 EEADTLEGRANQLEVEIRELKRKHKQEL 766 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556677776653
No 111
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=79.17 E-value=0.71 Score=43.36 Aligned_cols=17 Identities=41% Similarity=0.397 Sum_probs=15.1
Q ss_pred eeeeccccccccccccC
Q 001229 167 LLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM~G 183 (1119)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999976
No 112
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=78.96 E-value=37 Score=33.04 Aligned_cols=91 Identities=23% Similarity=0.377 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhh
Q 001229 934 MVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRD 1013 (1119)
Q Consensus 934 ~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrd 1013 (1119)
.+.+|-+|++.+..|...++.+-..+.+.+.+- +|... |-|
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~-----------------------------------~EL~~----l~~ 44 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKAL-----------------------------------EELEK----LAD 44 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHc----CCC
Confidence 578899999999999999888888887765432 22222 225
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 001229 1014 TAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHK 1064 (1119)
Q Consensus 1014 taeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~ 1064 (1119)
.+.--.--|+.||. +.-++|...=++|...++.+..++.++++.+.++..
T Consensus 45 d~~vy~~VG~vfv~-~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 45 DAEVYKLVGNVLVK-QEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred cchHHHHhhhHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566678999998 677788888888888888888888888887766543
No 113
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=78.93 E-value=1.2 Score=53.22 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=31.2
Q ss_pred CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 129 ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 129 ~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
...|+||.-...... .-.|.... .|...-.+.---||-||++|+||||-|..
T Consensus 81 ~~~ytFdnFv~g~~N-~~A~aa~~--~va~~~g~~~nplfi~G~~GlGKTHLl~A 132 (408)
T COG0593 81 NPKYTFDNFVVGPSN-RLAYAAAK--AVAENPGGAYNPLFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCCchhheeeCCch-HHHHHHHH--HHHhccCCcCCcEEEECCCCCCHHHHHHH
Confidence 457999986654443 33332221 12222222233589999999999999953
No 114
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=78.54 E-value=1.1e+02 Score=33.51 Aligned_cols=132 Identities=22% Similarity=0.330 Sum_probs=90.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 001229 928 VLGHARMVEHYADLQEKYNDLVS----RHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKE 1003 (1119)
Q Consensus 928 ~~ghar~~e~y~~l~e~~~~l~~----~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~e 1003 (1119)
|..|.+. |.|+..=|||.-. .=+..-+-|++.|+-..+.. +-...+++|..-|+. .-..+..|
T Consensus 4 ~~~He~a---f~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~------k~m~ei~~eN~~L~e----pL~~a~~e 70 (201)
T PF13851_consen 4 MKNHEKA---FQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNE------KLMAEISQENKRLSE----PLKKAEEE 70 (201)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhH----HHHHHHHH
Confidence 5566654 5777777887643 33455677888888666543 344555555555543 23345667
Q ss_pred hHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001229 1004 NKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQ 1072 (1119)
Q Consensus 1004 n~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~ 1072 (1119)
+..|+.+|++=----++-..+-.||+..++-+..-+-.....+|.-+++.++-|.|.+++..=|-.+.|
T Consensus 71 ~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 71 VEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777887766666666677788888888888888888888888888888888888888766665554
No 115
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.39 E-value=30 Score=35.52 Aligned_cols=93 Identities=24% Similarity=0.312 Sum_probs=58.0
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001229 977 RFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQI 1056 (1119)
Q Consensus 977 ~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~ 1056 (1119)
.|-..|+..+..++.+- ..|...+..|+.++-+.- +..+-+..+.+.++.....++........|..|++..+
T Consensus 52 ~~~e~l~~~~~~l~~d~----~~l~~~~~rL~~~~~~~e---re~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDI----ERLQNDVERLKEQLEELE---RELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666643 345556666665553332 33334455666667777777777777777777777666
Q ss_pred HHHH-------hhhhhHHHHHHHHHhh
Q 001229 1057 DKLK-------RKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1057 ~klk-------~kh~~e~~t~~~~lae 1076 (1119)
.-.+ ||-+.||..||..|.+
T Consensus 125 ~~~~tq~~~e~rkke~E~~kLk~rL~q 151 (151)
T PF11559_consen 125 QQRKTQYEHELRKKEREIEKLKERLNQ 151 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6555 4556678888887753
No 116
>PRK08727 hypothetical protein; Validated
Probab=78.13 E-value=1.3 Score=48.49 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=27.7
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCC-cceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYN-VSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN-~tIfAYGQTGSGKTyTM~G 183 (1119)
..|+||.-+...+ + .+..+ ..+..|.. -.|+-||++|+||||.+..
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~-----~~~~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQL-----QALAAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CcCChhhccCCcH-H--HHHHH-----HHHHhccCCCeEEEECCCCCCHHHHHHH
Confidence 3578888664333 2 12111 12222332 3599999999999998754
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=78.09 E-value=1.7 Score=46.89 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=30.3
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
..|+||.++. ... ..++. .+..++.. .+.+..|+-||++|+||||.+..
T Consensus 13 ~~~~~d~f~~-~~~-~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVA-GEN-AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred Chhhhccccc-CCc-HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 4689999873 222 23332 23233331 23456799999999999998743
No 118
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=77.97 E-value=1.6e+02 Score=41.68 Aligned_cols=112 Identities=23% Similarity=0.251 Sum_probs=65.6
Q ss_pred chhhHHHHHHHHhhhhhhh---HHHHHHHHHhhHHHH----HHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHH
Q 001229 975 GSRFAKSVAAELSALRVER---DREREFLKKENKSLK----IQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQ 1047 (1119)
Q Consensus 975 ~~~f~~~laae~s~lr~er---eke~~~~~~en~~l~----~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~q 1047 (1119)
...|.+-|.+||+.|+.|- |+.-+-|++++..+| -||.+--.-++.--+-+=+|+.+--....+...+...+.
T Consensus 1305 d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~ 1384 (1822)
T KOG4674|consen 1305 DKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQEL 1384 (1822)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777653 333444666666666 555554444555555555555555544444444433333
Q ss_pred H-----------HHHHHHHHHHHHhhhh--hHHHHHHHHHhhcCCCcccccC
Q 001229 1048 E-----------NEKLKKQIDKLKRKHK--MEMITMKQYLAESKLPESALQP 1086 (1119)
Q Consensus 1048 e-----------~~k~~~q~~klk~kh~--~e~~t~~~~laes~lp~~~~~~ 1086 (1119)
+ .+-..+.+++++.+.. -||.+++.-|-+..-+...++-
T Consensus 1385 el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s 1436 (1822)
T KOG4674|consen 1385 ELSDKKKAHELMQEDTSRKLEKLKEKLELSEELESLKEELEELQQLQATLQS 1436 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 3 3344556677777776 7888888888776555555543
No 119
>PF13166 AAA_13: AAA domain
Probab=77.82 E-value=2.1e+02 Score=36.43 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhhhhhHH---HHHHHHHhhHHHHHHhhhh--HHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 001229 979 AKSVAAELSALRVERDR---EREFLKKENKSLKIQLRDT--AEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLK 1053 (1119)
Q Consensus 979 ~~~laae~s~lr~erek---e~~~~~~en~~l~~qlrdt--aeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~ 1053 (1119)
+..|...|.++....+. +..-++++-..++..++.- ++..+---++.-++++.+.+...+++....++.+..++.
T Consensus 365 ~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 444 (712)
T PF13166_consen 365 IDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIE 444 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554433 2333444444444444432 111111112344567777788888888888888888898
Q ss_pred HHHHHHHhhh---hhHHHHHHHHHhhcCCCcccc
Q 001229 1054 KQIDKLKRKH---KMEMITMKQYLAESKLPESAL 1084 (1119)
Q Consensus 1054 ~q~~klk~kh---~~e~~t~~~~laes~lp~~~~ 1084 (1119)
++|..|+++. +.=+..+|++|..--...-.|
T Consensus 445 ~~i~~l~~~~~~~~~~~~~iN~~L~~~g~~~~~l 478 (712)
T PF13166_consen 445 KEIKELEAQLKNTEPAADRINEELKRLGFSNFSL 478 (712)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEE
Confidence 8888888764 444667777776554333333
No 120
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=77.62 E-value=2.3e+02 Score=40.18 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=112.9
Q ss_pred hhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001229 890 DELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKA 969 (1119)
Q Consensus 890 ~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaaka 969 (1119)
..+..+|=+.+...+++++|+..-|+=.+=|..+=.|... .|--|.-.|..|-..|--++ -+..+-..---|
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~-------e~~~l~~e~~~L~~~l~~lQ-t~~~~~e~s~~~ 798 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQ-------ELEKLSAEQESLQLLLDNLQ-TQKNELEESEMA 798 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4667788889999999999999988877767666555444 34334333333333333222 233333333334
Q ss_pred cccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHH
Q 001229 970 GAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQEN 1049 (1119)
Q Consensus 970 g~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~ 1049 (1119)
++.-|+ .=|..|-.||+.||-+-+.++..++.-+..+..||+++-==|-.++-.+ ...-+.++.++++...++++.
T Consensus 799 ~k~~~e-~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~---~~~~~~l~~~~~~~~~le~k~ 874 (1822)
T KOG4674|consen 799 TKDKCE-SRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESEL---KSLLTSLDSVSTNIAKLEIKL 874 (1822)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 555565 4589999999999999999999999999999999998877777666544 445567788888888888888
Q ss_pred HHHHHHHHHHHh
Q 001229 1050 EKLKKQIDKLKR 1061 (1119)
Q Consensus 1050 ~k~~~q~~klk~ 1061 (1119)
..|.++|..++-
T Consensus 875 ~eL~k~l~~~~~ 886 (1822)
T KOG4674|consen 875 SELEKRLKSAKT 886 (1822)
T ss_pred HHHHHHHHHhHH
Confidence 877777766553
No 121
>PRK08181 transposase; Validated
Probab=77.43 E-value=1.8 Score=49.02 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=17.9
Q ss_pred cCCCcceeeeccccccccccccC
Q 001229 161 AGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 89999999999999876
No 122
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=77.11 E-value=2.5e+02 Score=36.86 Aligned_cols=45 Identities=27% Similarity=0.353 Sum_probs=29.5
Q ss_pred HHHHHhhccce-eccccCCCcCccccccccccccccCCCcccccccccccccccC
Q 001229 681 LAASLQRGLQI-IDSHQRSSASNRSSVAFSFEHLTLKPCSEVDKTNASVQTNIEE 734 (1119)
Q Consensus 681 laasl~rgl~i-id~h~~~~~~~~s~~~~s~~~~~~~p~~~~~k~~~~~q~~~~~ 734 (1119)
+-|+-+.-++| || |+-| +|+|+-+.+..++|..-+-+ .+|..|.+
T Consensus 470 v~a~k~~~v~iriD-H~~~------~v~FgsDl~~s~~~~~~eg~--~lqs~~sE 515 (988)
T KOG2072|consen 470 VEAAKHNDVSIRID-HESN------SVSFGSDLFLSKEEDEPEGP--ELQSMPSE 515 (988)
T ss_pred HHHHhccceeEEec-cccc------eeeeccccccccccccCCCc--hhhcCchH
Confidence 34556666776 55 7554 57777766666777554443 49999987
No 123
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=77.01 E-value=1.2e+02 Score=33.49 Aligned_cols=109 Identities=19% Similarity=0.336 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHH
Q 001229 920 LDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREF 999 (1119)
Q Consensus 920 l~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~ 999 (1119)
.+.-++......--..+|-.-++.-|.||..|+-+..+-|...|+ .+
T Consensus 67 ~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~---------NE------------------------ 113 (207)
T PF05010_consen 67 SEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK---------NE------------------------ 113 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---------hH------------------------
Confidence 344456666666666777777788888888888888888877776 11
Q ss_pred HHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcCC
Q 001229 1000 LKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAESKL 1079 (1119)
Q Consensus 1000 ~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~laes~l 1079 (1119)
. -|+ ..+-|.+.||+.-++--..-+.. |++..++|..+|+.++++|..|+..|+-.|....+
T Consensus 114 -----E----~Lk------k~~~ey~~~l~~~eqry~aLK~h---AeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~ 175 (207)
T PF05010_consen 114 -----E----TLK------KCIEEYEERLKKEEQRYQALKAH---AEEKLEKANEEIAQVRSKHQAELLALQASLKKEEM 175 (207)
T ss_pred -----H----HHH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1 122 23445666676666544443333 45778899999999999999999999888854433
No 124
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=76.88 E-value=2.9e+02 Score=37.64 Aligned_cols=112 Identities=23% Similarity=0.315 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhcccC-cchhhHHHHHHHHhhhhhhhHH------HHHHHHHhhHHHHHHh----hhh---HHHHhhhhh
Q 001229 958 GVAEVKRAAAKAGAKG-HGSRFAKSVAAELSALRVERDR------EREFLKKENKSLKIQL----RDT---AEAVHAAGE 1023 (1119)
Q Consensus 958 gi~~vk~aaakag~~g-~~~~f~~~laae~s~lr~erek------e~~~~~~en~~l~~ql----rdt---aeav~aage 1023 (1119)
...|.+-.++++|..+ +..-+-+-+--|++--|-..++ ....|-++|+.|++-+ |++ -|.+-++-+
T Consensus 551 ~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~ 630 (1317)
T KOG0612|consen 551 AELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKE 630 (1317)
T ss_pred hhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666666 3334555555555522221111 1122334444444322 222 233333333
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH--HHhhhhhHHHH
Q 001229 1024 LLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDK--LKRKHKMEMIT 1069 (1119)
Q Consensus 1024 llvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~k--lk~kh~~e~~t 1069 (1119)
=.-=|.+..+|.........+...++.+-..+.+| ++.+|+.++.-
T Consensus 631 ~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~ 678 (1317)
T KOG0612|consen 631 EISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKM 678 (1317)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555554444444444555555555555 55555554443
No 125
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=76.85 E-value=1.9 Score=50.80 Aligned_cols=26 Identities=42% Similarity=0.667 Sum_probs=19.3
Q ss_pred HHHHHcCC-Ccceeeeccccccccccc
Q 001229 156 VKNALAGY-NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 156 V~~vL~Gy-N~tIfAYGQTGSGKTyTM 181 (1119)
+..++.|. ...++.||.||+|||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 44445444 444999999999999986
No 126
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=76.60 E-value=1e+02 Score=32.31 Aligned_cols=98 Identities=23% Similarity=0.332 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHH-----------HHHHHhcccCcchhhHHHHH
Q 001229 918 EELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIME---GVAEVK-----------RAAAKAGAKGHGSRFAKSVA 983 (1119)
Q Consensus 918 eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~---gi~~vk-----------~aaakag~~g~~~~f~~~la 983 (1119)
+.-.+|++.|+.+=.++-+...++.+....|..+=+.|-+ .|.++= -.|||||-.|.| | .-+|
T Consensus 5 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~i~~ia~qt~lLalNAsIEAaraGe~G~g--F-~vvA 81 (213)
T PF00015_consen 5 EKAQEANEEAVEEMEEIQESIEEIAESIEELSESSEDISEILSLINEIAEQTNLLALNASIEAARAGEAGRG--F-AVVA 81 (213)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHH--H-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhccccchhcccchh--H-HHHH
Confidence 3344444445444455555555555555555444443333 333322 357899988876 4 3567
Q ss_pred HHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHH
Q 001229 984 AELSALRVERDREREFLKKENKSLKIQLRDTAEAV 1018 (1119)
Q Consensus 984 ae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav 1018 (1119)
.||..|=.+-..--.....-...++.+...+.+.+
T Consensus 82 ~eir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~ 116 (213)
T PF00015_consen 82 DEIRKLAEQTSESAKEISEIIEEIQEQISQVVESM 116 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhh
Confidence 77766655444433334444444555544444333
No 127
>PRK10436 hypothetical protein; Provisional
Probab=76.08 E-value=1.2 Score=53.83 Aligned_cols=29 Identities=38% Similarity=0.483 Sum_probs=24.0
Q ss_pred HHHHHHcCCCcceeeeccccccccccccC
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.+..++..-++.|+..|+||||||.||..
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 45556677788999999999999999953
No 128
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=75.89 E-value=1.4 Score=54.67 Aligned_cols=29 Identities=34% Similarity=0.440 Sum_probs=24.5
Q ss_pred HHHHHHcCCCcceeeeccccccccccccC
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45667777789999999999999999854
No 129
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=75.55 E-value=1.5 Score=43.99 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=21.7
Q ss_pred HHHHHHHcCCCcceeeeccccccccccccC
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.++..+..|.| ++..|+||+|||+.+..
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 34556667766 78899999999998754
No 130
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=75.36 E-value=47 Score=32.64 Aligned_cols=101 Identities=18% Similarity=0.300 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhh
Q 001229 934 MVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRD 1013 (1119)
Q Consensus 934 ~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrd 1013 (1119)
.+.+|-.||+....+...+..+-..+.+.+.+ .+|..+ |-|
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v-----------------------------------~~eL~~----l~~ 48 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKA-----------------------------------LEELER----LPD 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHc----CCC
Confidence 46678888888777777777777666665543 223333 336
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1014 TAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1014 taeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
-+.-...-|-.||+ +.-++|...=++|....+-...++.++++.|.++++.-=..|.+.|
T Consensus 49 d~~vyk~VG~vlv~-~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 49 DTPVYKSVGNLLVK-TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred cchhHHHhchhhhe-ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777888999999 8899999999999999999999999999999998876555555544
No 131
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.30 E-value=2.4e+02 Score=35.90 Aligned_cols=68 Identities=25% Similarity=0.353 Sum_probs=42.0
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHh------hhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001229 995 REREFLKKENKSLKIQLRDTAEAVH------AAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRK 1062 (1119)
Q Consensus 995 ke~~~~~~en~~l~~qlrdtaeav~------aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~k 1062 (1119)
++...|.++.+.|+.+|.+-.+-+. ...+|.=+|++++......+......+++.+.++++|++++++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT 464 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444333 2355666777777777777777777777777777777666653
No 132
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=75.20 E-value=98 Score=38.60 Aligned_cols=93 Identities=28% Similarity=0.342 Sum_probs=54.5
Q ss_pred hhHHHhhHHHHHHHHHHhHHHh-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc
Q 001229 894 VDIESSRRHAERVESELRLEKK-VTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAK 972 (1119)
Q Consensus 894 ~~le~~r~~~ek~~~el~~ek~-c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~ 972 (1119)
.-+...+.....+..+|..=+. .-+++..+|...- -|++.++++++...++.++.
T Consensus 251 ~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~------~e~~~~~~~~~~~~le~~~~------------------ 306 (582)
T PF09731_consen 251 SLIAHAKERIDALQKELAELKEEEEEELERALEEQR------EELLSKLREELEQELEEKRA------------------ 306 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH------------------
Confidence 5577778888888887754333 3345555544332 24455566666555554442
Q ss_pred CcchhhHHHHHHHHhhhhhhhHHHHHHHHHh-hHHHHHHhhhhHHHHhhh
Q 001229 973 GHGSRFAKSVAAELSALRVERDREREFLKKE-NKSLKIQLRDTAEAVHAA 1021 (1119)
Q Consensus 973 g~~~~f~~~laae~s~lr~ereke~~~~~~e-n~~l~~qlrdtaeav~aa 1021 (1119)
++...++.+-++++..|++. +..|+.||+=.+++....
T Consensus 307 -----------~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~ 345 (582)
T PF09731_consen 307 -----------ELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEH 345 (582)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666666655 556777887777765443
No 133
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=75.06 E-value=1.1 Score=48.21 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=13.9
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
-+..+|.||||||+|+
T Consensus 25 H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTV 40 (229)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999998
No 134
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=74.81 E-value=5.9 Score=46.35 Aligned_cols=97 Identities=29% Similarity=0.409 Sum_probs=70.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhh----hh
Q 001229 949 VSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAG----EL 1024 (1119)
Q Consensus 949 ~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aag----el 1024 (1119)
-+-|+.||.|+.+.|.| .-|.+-|..-++|-|. |+-+-|. |-|||- --
T Consensus 110 ~a~H~~vm~G~KE~ke~--ED~FrKAQKPWaK~l~-evE~ak~-------------------------~yh~ack~EksA 161 (472)
T KOG2856|consen 110 EAYHKQVMGGFKETKEA--EDGFRKAQKPWAKLLK-EVEAAKK-------------------------AYHAACKEEKSA 161 (472)
T ss_pred hhhHHHHhcchhhhHHH--HHHHHhhcchHHHHHH-HHHHHHH-------------------------HHHHHHHHHHHH
Confidence 36699999999998754 4455555544555442 2222222 334442 24
Q ss_pred hhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001229 1025 LVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQY 1073 (1119)
Q Consensus 1025 lvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~ 1073 (1119)
|+|++.|.--.++..+.+..++...+|.|+++.|.|-||++-|..|++|
T Consensus 162 ~~re~n~kaDsSvspeq~kKlqdrveK~k~evqktkekYektl~el~~y 210 (472)
T KOG2856|consen 162 LTREQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKY 210 (472)
T ss_pred HHHHhccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7888888888889999999999999999999999999999987777655
No 135
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=74.64 E-value=91 Score=35.45 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHhcccCcchhhHHHHHH---HHhhhhhhhHHHHHHHHH
Q 001229 937 HYADLQEKYNDLVSRHRAIMEG----------VAEVKRAAAKAGAKGHGSRFAKSVAA---ELSALRVERDREREFLKK 1002 (1119)
Q Consensus 937 ~y~~l~e~~~~l~~~hr~i~~g----------i~~vk~aaakag~~g~~~~f~~~laa---e~s~lr~ereke~~~~~~ 1002 (1119)
.=|.+||.|..-|.+--+-..| ..-|+..+-+-|- .+..|++.|-. +|..++.+-+++|+-+|+
T Consensus 37 eRa~iEe~Yak~L~kLak~~~~~~~~Gt~~~~~~~~~~e~e~~a~--~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke 113 (269)
T cd07673 37 ERATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLAN--CHLELVRKLQELIKEVQKYGEEQVKSHKKTKE 113 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3466666666665554443222 3334433333222 23456666643 566666666666666654
No 136
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=74.46 E-value=3.5e+02 Score=37.32 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=54.7
Q ss_pred HHHHHHhHHHhhHHHHHHHHHHHHh-----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001229 905 RVESELRLEKKVTEELDDALSRAVL-----------------------GHARMVEHYADLQEKYNDLVSRHRAIMEGVAE 961 (1119)
Q Consensus 905 k~~~el~~ek~c~eel~~al~~a~~-----------------------ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~ 961 (1119)
-...+|..|.-|-++|......-++ =|..+.+-|.++..+|.++...-+.+..|+.+
T Consensus 346 ~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~~ 425 (1294)
T KOG0962|consen 346 LEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAELETNALD 425 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHH
Confidence 3445566667777777777643333 36888999999999999999999999999999
Q ss_pred HHHHHHHhcccC
Q 001229 962 VKRAAAKAGAKG 973 (1119)
Q Consensus 962 vk~aaakag~~g 973 (1119)
..+.|-++-+-|
T Consensus 426 ~~~~~~~~~~~l 437 (1294)
T KOG0962|consen 426 LIKEITDREVSL 437 (1294)
T ss_pred HHHHHHHHHHHH
Confidence 999998876665
No 137
>PF12846 AAA_10: AAA-like domain
Probab=74.23 E-value=1.2 Score=48.80 Aligned_cols=19 Identities=47% Similarity=0.536 Sum_probs=16.4
Q ss_pred Ccceeeecccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~ 182 (1119)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5568889999999999884
No 138
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=74.18 E-value=1 Score=57.23 Aligned_cols=109 Identities=23% Similarity=0.352 Sum_probs=0.0
Q ss_pred hhhhhHHHhhHHHHHHHHHHhHHHhhHHHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001229 891 ELRVDIESSRRHAERVESELRLEKKVTEEL-------DDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVK 963 (1119)
Q Consensus 891 elr~~le~~r~~~ek~~~el~~ek~c~eel-------~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk 963 (1119)
.+|..|+.++..+-.++.+|..|.+..+.| .+-+..+.....|+++....|+|....|--- .. ..
T Consensus 360 ~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~--~~------~~ 431 (713)
T PF05622_consen 360 ALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECS--QA------QQ 431 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cc------cc
Confidence 367788888888888888888877766543 2334444445555665555566554444110 00 00
Q ss_pred HHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHh
Q 001229 964 RAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQL 1011 (1119)
Q Consensus 964 ~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~ql 1011 (1119)
....++|-. .+.=-.+|++|+..... ||+ -..|..||+.|+.+.
T Consensus 432 ~~l~~~~~~--~~~~~~~l~~El~~~~l-~er-l~rLe~ENk~Lk~~~ 475 (713)
T PF05622_consen 432 EQLSQSGEE--SSSSGDNLSAELNPAEL-RER-LLRLEHENKRLKEKQ 475 (713)
T ss_dssp ------------------------------------------------
T ss_pred ccccccccc--ccccccchhhhccchHH-HHH-HHHHHHHHHHHHHHh
Confidence 111112211 11223467888864322 222 234889999997664
No 139
>PRK06835 DNA replication protein DnaC; Validated
Probab=74.10 E-value=1.7 Score=50.42 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=23.9
Q ss_pred hHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 152 GLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 152 ~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
+...|+.+-.+. ..|+-||++|+||||.+.+
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 335677766554 5699999999999998865
No 140
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=74.01 E-value=1.1 Score=43.37 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=13.0
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999976
No 141
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.92 E-value=1.6 Score=53.19 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=24.1
Q ss_pred HHHHHHcCCCcceeeeccccccccccccC
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.+..++..-++.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45566777788899999999999999964
No 142
>PF13514 AAA_27: AAA domain
Probab=73.79 E-value=3.4e+02 Score=36.90 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHhcccCc
Q 001229 931 HARMVEHYADLQEKYNDLVSRHRAIMEGVAEVK----RAAAKAGAKGH 974 (1119)
Q Consensus 931 har~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk----~aaakag~~g~ 974 (1119)
+..+-+++.+++..+..+-.++..+.+-+++.+ .+....|..+.
T Consensus 675 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~ 722 (1111)
T PF13514_consen 675 REQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPAD 722 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344445566666666666667776666665555 45556777663
No 143
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=73.33 E-value=1.3 Score=41.46 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=16.2
Q ss_pred cceeeeccccccccccccC
Q 001229 165 VSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~G 183 (1119)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4578899999999999854
No 144
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=73.10 E-value=3.4e+02 Score=36.62 Aligned_cols=109 Identities=21% Similarity=0.270 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 001229 938 YADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA 1017 (1119)
Q Consensus 938 y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea 1017 (1119)
|-+++++|+.-...=|++..-++-.+|--+.+- ..|.+.+. ..+.|+|.+.++|++|+..|+
T Consensus 353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~-----~~~~~~~~----~~~~e~e~k~~~L~~evek~e--------- 414 (1074)
T KOG0250|consen 353 VNDLKEEIREIENSIRKLKKEVDRLEKQIADLE-----KQTNNELG----SELEERENKLEQLKKEVEKLE--------- 414 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhh----hhHHHHHHHHHHHHHHHHHHH---------
Confidence 345566665555555555555555555444331 12333333 334566666666666665554
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001229 1018 VHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQ 1072 (1119)
Q Consensus 1018 v~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~ 1072 (1119)
+++++|++-.+-+..+ +...+.|....+-.|..|+|+-..-..+|+-
T Consensus 415 -----~~~~~L~~e~~~~~~~---~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~ 461 (1074)
T KOG0250|consen 415 -----EQINSLREELNEVKEK---AKEEEEEKEHIEGEILQLRKKIENISEELKD 461 (1074)
T ss_pred -----HHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777766555432 3345555555666666666665555444443
No 145
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=72.77 E-value=1.6e+02 Score=32.91 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001229 917 TEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIM 956 (1119)
Q Consensus 917 ~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~ 956 (1119)
-.++++.|.-|..+=|.++..-.-|+.+|+++..++....
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e 72 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLE 72 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888899999999888776543
No 146
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=72.73 E-value=1.8 Score=50.18 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=21.1
Q ss_pred HHHHHHcCCCcceeeeccccccccccccC
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.+..++.--.+.|+-.|+||||||+||..
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 33444433357789999999999999953
No 147
>PF13245 AAA_19: Part of AAA domain
Probab=72.71 E-value=1.9 Score=39.65 Aligned_cols=27 Identities=37% Similarity=0.452 Sum_probs=18.4
Q ss_pred HHHHHcCCCcceeeeccccccccccccC
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
|..++. -+..++.-|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 444555 333344589999999999853
No 148
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=72.36 E-value=1.6 Score=48.29 Aligned_cols=18 Identities=44% Similarity=0.567 Sum_probs=15.4
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
.+.|+-.|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 456777799999999998
No 149
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=72.25 E-value=3.1e+02 Score=35.83 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=15.6
Q ss_pred HHHHhHhHHHHHHHHhhhhh
Q 001229 779 NELENICTEQAAKIEQLNRL 798 (1119)
Q Consensus 779 ~~le~~c~~qa~~i~ql~~l 798 (1119)
.+|.+-|++=...-+|+|.+
T Consensus 169 ~~L~nk~~~lt~~~~q~~tk 188 (1265)
T KOG0976|consen 169 EDLHDKNEELNEFNMEFQTK 188 (1265)
T ss_pred HHHhhhhhHHhHHHHHHHHH
Confidence 36778888888888888877
No 150
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=72.25 E-value=3.3e+02 Score=36.12 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HhHHHHHHH
Q 001229 937 HYADLQEKYNDLVSRHRAIM---EGVAEVKRA 965 (1119)
Q Consensus 937 ~y~~l~e~~~~l~~~hr~i~---~gi~~vk~a 965 (1119)
++.++..+...++..++.+. +=|.++.+.
T Consensus 563 ~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~ 594 (908)
T COG0419 563 QLEDRLQELKELLEELRLLRTRKEELEELRER 594 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666667777777666 555555533
No 151
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=71.99 E-value=76 Score=34.52 Aligned_cols=43 Identities=33% Similarity=0.402 Sum_probs=26.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001229 1021 AGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKH 1063 (1119)
Q Consensus 1021 agellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh 1063 (1119)
|-+.|.|..+.++-+..-+.....+....++|+.+|.+|+.|.
T Consensus 86 Ar~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl 128 (221)
T PF04012_consen 86 AREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKL 128 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666665555544
No 152
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=71.50 E-value=3.2 Score=46.46 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=33.6
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
++|.|..+-.....+..+|.... .+++.+-.|. .++-||++|+||||-..+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~--nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLA-SLVEFFERGE--NLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHHHH-HHHHHhccCC--cEEEECCCCCcHHHHHHH
Confidence 44554444444556677776655 5555555443 467799999999998865
No 153
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=71.40 E-value=2.2 Score=50.44 Aligned_cols=20 Identities=35% Similarity=0.215 Sum_probs=17.2
Q ss_pred CCcceeeecccccccccccc
Q 001229 163 YNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM~ 182 (1119)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678889999999999984
No 154
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=71.38 E-value=1.5 Score=46.84 Aligned_cols=19 Identities=42% Similarity=0.468 Sum_probs=16.4
Q ss_pred Ccceeeecccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~ 182 (1119)
+|.|+-.|+||||||+||.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678889999999999984
No 155
>PRK06921 hypothetical protein; Provisional
Probab=71.25 E-value=3 Score=46.96 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=22.3
Q ss_pred hHHHHHHHHc---CCCcceeeeccccccccccccC
Q 001229 152 GLPLVKNALA---GYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 152 ~~pLV~~vL~---GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
+...++.+-. +....|+-||++|+||||.+.+
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 3355555432 2345688999999999998865
No 156
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=71.12 E-value=1.9e+02 Score=32.71 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=48.7
Q ss_pred hHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHhcccCcchhhHH
Q 001229 911 RLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRA----------IMEGVAEVKRAAAKAGAKGHGSRFAK 980 (1119)
Q Consensus 911 ~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~----------i~~gi~~vk~aaakag~~g~~~~f~~ 980 (1119)
+.-+....||-+-|+ .=|.+||.|-.-|.+.-+ .......|+..+-+-|--+ ..|++
T Consensus 15 k~g~~~~kel~~flk-----------eRa~IEe~Yak~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~H--~~l~~ 81 (261)
T cd07674 15 KHGQISTKELADFVR-----------ERAAIEETYSKSMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALCH--LELMR 81 (261)
T ss_pred HhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 344556677766654 236677777776665544 2233344555555444333 45777
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhh
Q 001229 981 SVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGEL 1024 (1119)
Q Consensus 981 ~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagel 1024 (1119)
.|-.++.-+..=+++-++ ..+....+.-+|.++||.+-..
T Consensus 82 ~L~~~~~~i~~~~~~~~k----~~kk~~e~~~~~~~~~q~~q~~ 121 (261)
T cd07674 82 KLNDLIKDINRYGDEQVK----IHKKTKEEAIGTLEAVQSLQVQ 121 (261)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHH
Confidence 666433222221111111 2222344555677777775533
No 157
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=70.79 E-value=2.2e+02 Score=33.40 Aligned_cols=157 Identities=24% Similarity=0.315 Sum_probs=88.3
Q ss_pred hhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHH
Q 001229 890 DELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYN--DLVSRHRAIMEGVAEVKRAAA 967 (1119)
Q Consensus 890 ~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~--~l~~~hr~i~~gi~~vk~aaa 967 (1119)
+.|+.-+++-++-...++.||+.||-=..-|.+-+ +++.-++--+-.-|+-+|-|+ .|+-| |..+||--.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~-~~lr~~sv~~~~~aEqEEE~isN~LlKk-------l~~l~keKe 94 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEEN-RALREASVRIQAKAEQEEEFISNTLLKK-------LQQLKKEKE 94 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 55666666666666667777777765444444332 223333334445578888885 44444 555555433
Q ss_pred Hhc--ccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHh----hHHHHHHhhhhH---HHHhhhhhhhhhhhhHHHHHHHH
Q 001229 968 KAG--AKGHGSRFAKSVAAELSALRVERDREREFLKKE----NKSLKIQLRDTA---EAVHAAGELLVRLKEAEQAASVA 1038 (1119)
Q Consensus 968 kag--~~g~~~~f~~~laae~s~lr~ereke~~~~~~e----n~~l~~qlrdta---eav~aagellvrl~eaeea~~~a 1038 (1119)
.-- +---+-...|+|..-|..||.|+-.=-..|..| --.|+.+|.+-. .++|..=| |||. .-|-
T Consensus 95 ~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le---~Lr~----EKVd 167 (310)
T PF09755_consen 95 TLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELE---RLRR----EKVD 167 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHH----HHHh
Confidence 221 111234678999999999988764211111111 123444444321 24443333 5554 3455
Q ss_pred HHhhhhhHHHH--HHHHHHHHHHHh
Q 001229 1039 EANFSGVQQEN--EKLKKQIDKLKR 1061 (1119)
Q Consensus 1039 ~~~~~~~~qe~--~k~~~q~~klk~ 1061 (1119)
-+++...|||. .+|-|||++|-.
T Consensus 168 lEn~LE~EQE~lvN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 168 LENTLEQEQEALVNRLWKQMDKLEA 192 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888884 799999999853
No 158
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=70.36 E-value=2.3 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.6
Q ss_pred CCCcceeeeccccccccccccC
Q 001229 162 GYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 162 GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
--.+.|+..|+||||||.||..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHH
Confidence 3468899999999999999843
No 159
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.05 E-value=2.3e+02 Score=35.59 Aligned_cols=59 Identities=24% Similarity=0.346 Sum_probs=32.0
Q ss_pred HhhHHHHHHHHHHHHhhhhHHHHH-H----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc
Q 001229 914 KKVTEELDDALSRAVLGHARMVEH-Y----ADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAK 972 (1119)
Q Consensus 914 k~c~eel~~al~~a~~ghar~~e~-y----~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~ 972 (1119)
+.|..++-+-|+-=-.||..|+++ | .++++...+|=.+.......|...+=..+.+.+.
T Consensus 222 ~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~ 285 (569)
T PRK04778 222 KELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNE 285 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 467777777777777788888764 2 2344444444444444444444433333333333
No 160
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=69.76 E-value=22 Score=41.34 Aligned_cols=84 Identities=31% Similarity=0.363 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh---hhHH
Q 001229 991 VERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKH---KMEM 1067 (1119)
Q Consensus 991 ~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh---~~e~ 1067 (1119)
.||..|.+.|+-+|..|..||- |++| +++|-+---+ .-|.-...+.+||..+..|++-+++.. +.|-
T Consensus 95 ~e~q~e~~qL~~qnqkL~nqL~------~~~~-vf~k~k~~~q---~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeees 164 (401)
T PF06785_consen 95 EERQQESEQLQSQNQKLKNQLF------HVRE-VFMKTKGDIQ---HLEGLIRHLREENQCLQLQLDALQQECGEKEEES 164 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH------HHHH-HHHHhcchHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH
Confidence 4688999999999999999995 5555 6666543211 122334456788999999999988766 4467
Q ss_pred HHHHHHHhhcCCCcccc
Q 001229 1068 ITMKQYLAESKLPESAL 1084 (1119)
Q Consensus 1068 ~t~~~~laes~lp~~~~ 1084 (1119)
.|||+-|||..-=.-+|
T Consensus 165 q~LnrELaE~layqq~L 181 (401)
T PF06785_consen 165 QTLNRELAEALAYQQEL 181 (401)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888765443333
No 161
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=69.67 E-value=58 Score=35.58 Aligned_cols=85 Identities=29% Similarity=0.422 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHH
Q 001229 920 LDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREF 999 (1119)
Q Consensus 920 l~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~ 999 (1119)
|+--|.--=.-|-||++|-+..+ .+||++..-.++=|+.=+..-.+|. -|++-|-.|-.-|+-.-|.|+.+
T Consensus 86 Le~l~~~qk~~q~Rm~~qL~~aE-------~rhrr~i~eLe~EKrkh~~~~aqgD--D~t~lLEkEReRLkq~lE~Ek~~ 156 (192)
T PF09727_consen 86 LEKLMEHQKKMQRRMLEQLAAAE-------KRHRRTIQELEEEKRKHAEDMAQGD--DFTNLLEKERERLKQQLEQEKAQ 156 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334667888877766 5788888888888888887777775 69999999998888888887776
Q ss_pred ---HHHhhHHHHHHhhh
Q 001229 1000 ---LKKENKSLKIQLRD 1013 (1119)
Q Consensus 1000 ---~~~en~~l~~qlrd 1013 (1119)
+.+|++.+..+|+|
T Consensus 157 ~~~~EkE~~K~~~~l~e 173 (192)
T PF09727_consen 157 QKKLEKEHKKLVSQLEE 173 (192)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888765
No 162
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=69.63 E-value=2.6 Score=45.10 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=21.6
Q ss_pred HHHHHHHcCCCcceeeecccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
..|..++...+..++..|+.||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 34566666665566678999999999873
No 163
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=69.48 E-value=1.5 Score=55.85 Aligned_cols=165 Identities=22% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhcccccccc-cccccchhHHHHHHHHHHHHhhccccCCCCcccccccchhhhhhhhhhhccccCCCCchHHHHHHHhhh
Q 001229 800 VQEVPSHQNG-NISFEMNEKEVLLKEIESLRTKLQYTDASPFKSTENLRSSLLSRSIQLRKSIEARPNTAEELEKERERW 878 (1119)
Q Consensus 800 ~~~~~~~~~~-~~~~~~~e~e~l~~ei~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~er~~w 878 (1119)
..+.+.|+.. +... .-.|+|-+|..+|+.+|+.++.--. .+..+.+- -..|+.||..|
T Consensus 266 n~~l~~Elk~Lr~~~--~n~elLeEe~~sLq~kl~~~E~~~~----el~~lq~e---------------~~~Le~el~sW 324 (722)
T PF05557_consen 266 NRRLREELKHLRQSQ--ENVELLEEEKRSLQRKLERLEELEE----ELAELQLE---------------NEKLEDELNSW 324 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---------------HHHHHHHHHHH
Confidence 4455555554 3333 4578999999999999997632221 22222211 24477888777
Q ss_pred hhhcccceehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001229 879 TEMESEWICLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEG 958 (1119)
Q Consensus 879 ~e~es~wi~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~g 958 (1119)
+-.... +++ +-.+-+.|-.+|.-.=.-|+-+++.+-.++-...+|-..-......
T Consensus 325 ~sl~~~-~~~------------------------~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e 379 (722)
T PF05557_consen 325 ESLLQD-IGL------------------------EFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQE 379 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhc-CCC------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 543221 110 2233444444444444445555555555554444444444444444
Q ss_pred HHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhh--hHHHHhh
Q 001229 959 VAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRD--TAEAVHA 1020 (1119)
Q Consensus 959 i~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrd--taeav~a 1020 (1119)
+..++.-+.++-.+.. .+..++..=||-+..+.+|..+||.||.. +=+++..
T Consensus 380 ~~~l~~~~~~l~~~~~----------~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~ 433 (722)
T PF05557_consen 380 KEQLLKEIEELEASLE----------ALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMN 433 (722)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 4444443333322211 11222333355556667777777777764 4444443
No 164
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=69.31 E-value=2.8 Score=47.13 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=22.1
Q ss_pred HHHHHHcCCCcceeeeccccccccccccC
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.+..++..-.+.|+-.|+||||||.||..
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 34555655567788899999999999853
No 165
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=68.94 E-value=3.9 Score=53.05 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=17.4
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|-+.+||.||+||+|||.|+
T Consensus 778 sgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 344567889999999999987
No 166
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=68.87 E-value=52 Score=40.98 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhh
Q 001229 1051 KLKKQIDKLKRKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1051 k~~~q~~klk~kh~~e~~t~~~~lae 1076 (1119)
.-...+.+|||||...+..+.+|+.+
T Consensus 308 ~RL~~l~~LkrKyg~s~e~l~~~~~~ 333 (563)
T TIGR00634 308 ERLAQIKRLKRKYGASVEEVLEYAEK 333 (563)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33447788999999888888888755
No 167
>PRK09039 hypothetical protein; Validated
Probab=67.58 E-value=35 Score=40.09 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=16.1
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001229 1024 LLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKR 1061 (1119)
Q Consensus 1024 llvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~ 1061 (1119)
+=.|+...+.++...+..+..+..+...|.+||+.||+
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~ 151 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRR 151 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444443
No 168
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=67.12 E-value=3.7 Score=40.64 Aligned_cols=102 Identities=27% Similarity=0.371 Sum_probs=30.0
Q ss_pred HHHHHHHHhcccCcch----hhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH-------Hhhhhhh---hh
Q 001229 961 EVKRAAAKAGAKGHGS----RFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA-------VHAAGEL---LV 1026 (1119)
Q Consensus 961 ~vk~aaakag~~g~~~----~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea-------v~aagel---lv 1026 (1119)
||....-+-+.+|-.- .|+..|+.++..|.. |...|+.++..|+.+|.+=-+- +-.|.+. ++
T Consensus 5 di~~~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~~----e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~ 80 (131)
T PF05103_consen 5 DIRNKEFKKSMRGYDPDEVDDFLDELAEELERLQR----ENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIK 80 (131)
T ss_dssp HHHH----EEEEEEEHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCT--------------------------
T ss_pred HHhhCccCCCCCCcCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHH
Confidence 4444445555666332 499999999999984 5566777777777666543211 1111111 11
Q ss_pred h--hhhHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHhhhhhH
Q 001229 1027 R--LKEAEQAASVAEANF----SGVQQENEKLKKQIDKLKRKHKME 1066 (1119)
Q Consensus 1027 r--l~eaeea~~~a~~~~----~~~~qe~~k~~~q~~klk~kh~~e 1066 (1119)
+ .++|+.-+.-|++.+ ..+.++.+++..+++.||+.+..+
T Consensus 81 ~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk~~~~~~ 126 (131)
T PF05103_consen 81 AEAEEEAEEIIEEAQKEAEEIIEEARAEAERLREEIEELKRQAEQF 126 (131)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122333333344333 235566666667777777665543
No 169
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=67.09 E-value=4.1 Score=47.08 Aligned_cols=37 Identities=35% Similarity=0.275 Sum_probs=25.3
Q ss_pred HHHHHhhHHHHHHHHcCCC-cceeeecccccccccccc
Q 001229 146 DIFQVVGLPLVKNALAGYN-VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 146 eVY~~v~~pLV~~vL~GyN-~tIfAYGQTGSGKTyTM~ 182 (1119)
-+++..+..++.+.+.|.+ --.+-||+.|+|||.|..
T Consensus 38 ~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred hcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 3445555566666665533 446789999999999973
No 170
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=66.90 E-value=3.6 Score=49.67 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=32.5
Q ss_pred CeeEEcCeecCCCCChHHHHHHhhHHHHHHH--HcC--CCcceeeeccccccccccccC
Q 001229 129 ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNA--LAG--YNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 129 ~k~F~FD~VFd~~asQeeVY~~v~~pLV~~v--L~G--yN~tIfAYGQTGSGKTyTM~G 183 (1119)
+..|+||.-+.. .++...|. .+..+.+.. ..| ||. +|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 356999986653 34444443 333444332 223 443 77899999999998854
No 171
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=66.72 E-value=20 Score=45.68 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=3.7
Q ss_pred CCCCcccc
Q 001229 384 YRCSCLTH 391 (1119)
Q Consensus 384 YRDSKLTr 391 (1119)
|.=|-||+
T Consensus 843 F~is~L~k 850 (1102)
T KOG1924|consen 843 FNISFLCK 850 (1102)
T ss_pred cchHHHHh
Confidence 44444444
No 172
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.28 E-value=3.5e+02 Score=36.99 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=16.0
Q ss_pred hhhhhhhHHHhhHHHHHHHHHHhHHHh
Q 001229 889 TDELRVDIESSRRHAERVESELRLEKK 915 (1119)
Q Consensus 889 t~elr~~le~~r~~~ek~~~el~~ek~ 915 (1119)
+++++..++..=.+.++++.+|+.+|+
T Consensus 67 ~~~~~~~i~~ap~~~~~~~~~l~~~~~ 93 (1109)
T PRK10929 67 AKQYQQVIDNFPKLSAELRQQLNNERD 93 (1109)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 345555566655666666666665553
No 173
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.26 E-value=3.7 Score=46.64 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=27.0
Q ss_pred HHHhhH-HHHHHHHcCCCcceeeecccccccccccc
Q 001229 148 FQVVGL-PLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 148 Y~~v~~-pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
|+.... ++++.+.--.-+.|+..|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 444443 47777777777889999999999999873
No 174
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=65.87 E-value=3e+02 Score=35.69 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001229 1034 AASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQ 1072 (1119)
Q Consensus 1034 a~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~ 1072 (1119)
|+--|+.....++-..-+=-++|..||.|-..=|.-|=.
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 555566666667777777778888888887766666544
No 175
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.41 E-value=1.6e+02 Score=37.86 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=21.9
Q ss_pred hhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHH
Q 001229 1003 ENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQ 1047 (1119)
Q Consensus 1003 en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~q 1047 (1119)
.-+.|+.||.+.-..+......-++|++-+.-+.++++....+.+
T Consensus 353 ~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~ 397 (754)
T TIGR01005 353 RESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLT 397 (754)
T ss_pred HHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444444445554444444444444444333
No 176
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=65.23 E-value=3.8e+02 Score=34.14 Aligned_cols=133 Identities=23% Similarity=0.299 Sum_probs=67.0
Q ss_pred HHHHHhhhhhhcccceehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--
Q 001229 871 LEKERERWTEMESEWICLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDL-- 948 (1119)
Q Consensus 871 ~~~er~~w~e~es~wi~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l-- 948 (1119)
++.-..+-.+...+|-..--.|=.+++..|......+.|....-..-++|..-++....-=..==|.|..|+..|-.+
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k 482 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445556666677777554444444444444333323333322222333333333333222222233344444433222
Q ss_pred ----HHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhh
Q 001229 949 ----VSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGEL 1024 (1119)
Q Consensus 949 ----~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagel 1024 (1119)
-+-=++|+|=|..|||- =+||.-+- .+-+.|.+|...|..+|.=|=-. +-||
T Consensus 483 ~~~Rs~Yt~RIlEIv~NI~KQ-----------------k~eI~KIl----~DTr~lQkeiN~l~gkL~RtF~v---~dEl 538 (594)
T PF05667_consen 483 DVNRSAYTRRILEIVKNIRKQ-----------------KEEIEKIL----SDTRELQKEINSLTGKLDRTFTV---TDEL 538 (594)
T ss_pred CCCHHHHHHHHHHHHHhHHHH-----------------HHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHH---HHHH
Confidence 12236788888888774 23343332 25677888999999999877433 4466
Q ss_pred hhh
Q 001229 1025 LVR 1027 (1119)
Q Consensus 1025 lvr 1027 (1119)
|.|
T Consensus 539 ifr 541 (594)
T PF05667_consen 539 IFR 541 (594)
T ss_pred HHH
Confidence 654
No 177
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.21 E-value=45 Score=35.65 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 001229 1045 VQQENEKLKKQIDKLKRKHK 1064 (1119)
Q Consensus 1045 ~~qe~~k~~~q~~klk~kh~ 1064 (1119)
++.|.+.+|||.++|-+.|+
T Consensus 173 ~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 77888889999999988775
No 178
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=64.74 E-value=2e+02 Score=33.02 Aligned_cols=93 Identities=27% Similarity=0.377 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHhhcccc-CCCCcccccccchhhhhhhhhhhccccCCCCchHHHHHHHhhhhhhcccceehhhh---
Q 001229 816 NEKEVLLKEIESLRTKLQYT-DASPFKSTENLRSSLLSRSIQLRKSIEARPNTAEELEKERERWTEMESEWICLTDE--- 891 (1119)
Q Consensus 816 ~e~e~l~~ei~~l~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~er~~w~e~es~wi~lt~e--- 891 (1119)
.|=|.+-+.++.+.++|... .-..+.+..++. +++.+ ...|..|-..|-.-..+=|++.++
T Consensus 23 ~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~-ll~~~--------------~k~L~aE~~qwqk~~peii~~n~~VL~ 87 (268)
T PF11802_consen 23 KECEELWKDMEECQNKLSLIGTETLTDSDAQLS-LLMMR--------------VKCLTAELEQWQKRTPEIIPLNPEVLL 87 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHH-HHHHH--------------HHHHHHHHHHHHhcCCCcCCCCHHHHH
Confidence 45566666677778888776 222222222222 33333 345888999999999998888765
Q ss_pred ---------hhhhHH----HhhHHHHHHHHHHhHHHhhHHHHHHH
Q 001229 892 ---------LRVDIE----SSRRHAERVESELRLEKKVTEELDDA 923 (1119)
Q Consensus 892 ---------lr~~le----~~r~~~ek~~~el~~ek~c~eel~~a 923 (1119)
++.||| +.+...++++..|+.|++|-.|-++.
T Consensus 88 ~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql 132 (268)
T PF11802_consen 88 TLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQL 132 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 44666677777777777777665544
No 179
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=64.74 E-value=3.2 Score=43.48 Aligned_cols=29 Identities=34% Similarity=0.410 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCcceeeecccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.|...+-.|.+.+++-||+.|+|||+.|.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 34444446678899999999999999773
No 180
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=64.69 E-value=4.4 Score=40.54 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=19.1
Q ss_pred HHHHHcCCCcceeeeccccccccccccC
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
+..++.+. ..++..|+||||||+++..
T Consensus 17 ~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 17 IEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 44445443 4567789999999998765
No 181
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=64.56 E-value=3.6 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=17.1
Q ss_pred cCC-CcceeeeccccccccccccC
Q 001229 161 AGY-NVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 161 ~Gy-N~tIfAYGQTGSGKTyTM~G 183 (1119)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 453 34566699999999998743
No 182
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=64.54 E-value=1.7e+02 Score=37.45 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001229 914 KKVTEELDDALSRAVLGHARMVE----HYADLQEKYNDLVSRHRAIMEGVAEVKR 964 (1119)
Q Consensus 914 k~c~eel~~al~~a~~ghar~~e----~y~~l~e~~~~l~~~hr~i~~gi~~vk~ 964 (1119)
+.--||...-++-+|.-|.-|++ -|+.++-.-.+|-++-++++...+..|+
T Consensus 511 l~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 511 LRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45678888888999999988875 4677777777777777777766665544
No 183
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=64.40 E-value=3.6 Score=43.53 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=16.0
Q ss_pred cceeeeccccccccccccC
Q 001229 165 VSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~G 183 (1119)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4589999999999998765
No 184
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=64.32 E-value=15 Score=44.27 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..+..+++|.|. +..++||||||.+.
T Consensus 116 ~ai~~~~~G~dv--i~~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDA--IGRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456677899885 45669999999764
No 185
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.27 E-value=2.8e+02 Score=35.25 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=43.8
Q ss_pred hhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001229 890 DELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVS 950 (1119)
Q Consensus 890 ~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~ 950 (1119)
++|...|+.-+.-.+.++.|++.-+..-.++.+-+...-....++-++|+ +.+|=.+||.
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~ 390 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVELLP 390 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 45666778888888888888888777777777777777777777777766 6666555554
No 186
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=63.32 E-value=4.2 Score=44.51 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=18.7
Q ss_pred HHHcCCCcceeeecccccccccccc
Q 001229 158 NALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 158 ~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
..+....+.++-+|++|+|||+++.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344445678889999999998773
No 187
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.32 E-value=3e+02 Score=32.16 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=29.5
Q ss_pred hhhhhhHHHhhHHHHHHHHHHhHH-------HhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001229 890 DELRVDIESSRRHAERVESELRLE-------KKVTEELDDALSRAVLGHARMVEHYADLQEKY 945 (1119)
Q Consensus 890 ~elr~~le~~r~~~ek~~~el~~e-------k~c~eel~~al~~a~~ghar~~e~y~~l~e~~ 945 (1119)
.||+.-++..|...+..+.|...+ -.. .++.++..|.--=+.|-.||.|+-|.
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~---a~~d~r~~m~~q~~~vK~~aRl~aK~ 137 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNPPLFREYYT---ADPDMRLLMDNQFQLVKTYARLEAKK 137 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777665443 111 12334445555555555555555554
No 188
>PHA03155 hypothetical protein; Provisional
Probab=63.19 E-value=16 Score=36.64 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhH
Q 001229 980 KSVAAELSALRVERDREREFLKKENKSLKIQLRDTA 1015 (1119)
Q Consensus 980 ~~laae~s~lr~ereke~~~~~~en~~l~~qlrdta 1015 (1119)
.-|||||.-|+. |||.|+.||+-.+
T Consensus 11 EeLaaeL~kL~~-----------ENK~LKkkl~~~~ 35 (115)
T PHA03155 11 EELEKELQKLKI-----------ENKALKKKLLQHG 35 (115)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHccC
Confidence 458888888877 9999999998765
No 189
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=62.76 E-value=5 Score=47.87 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=35.9
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHH-HHHc--C--CCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVK-NALA--G--YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~--G--yN~tIfAYGQTGSGKTyTM 181 (1119)
..++|+.|-+.+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3577888877666556666666666653 2343 3 2456889999999999976
No 190
>PRK09183 transposase/IS protein; Provisional
Probab=62.40 E-value=3.9 Score=45.80 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=16.7
Q ss_pred cCCCcceeeeccccccccccccC
Q 001229 161 AGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4544 66799999999998865
No 191
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=62.37 E-value=4.7 Score=47.25 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=28.0
Q ss_pred CCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 141 NSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 141 ~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+..|..+|+.+..-+. ......+|.-|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 3468999998875443 344456799999999999976
No 192
>PRK09343 prefoldin subunit beta; Provisional
Probab=62.25 E-value=1.4e+02 Score=30.16 Aligned_cols=103 Identities=20% Similarity=0.298 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhh
Q 001229 934 MVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRD 1013 (1119)
Q Consensus 934 ~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrd 1013 (1119)
.+.+|-.||.++..+...+..+...+.+.+.+- +|.. .|-|
T Consensus 12 ~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~-----------------------------------~EL~----~L~~ 52 (121)
T PRK09343 12 QLAQLQQLQQQLERLLQQKSQIDLELREINKAL-----------------------------------EELE----KLPD 52 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHH----cCCC
Confidence 467788888888888887777777666655432 2222 3446
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 001229 1014 TAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1014 taeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1076 (1119)
-+.--...|-+||+- .-++|...-++|..-.+-+...+.+|.+.|+++++.-=..|.+.|+.
T Consensus 53 d~~VYk~VG~vlv~q-d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 53 DTPIYKIVGNLLVKV-DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred cchhHHHhhHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677788899999997 77888888899999999999999999999999999888888887753
No 193
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=61.88 E-value=3.9 Score=46.87 Aligned_cols=28 Identities=32% Similarity=0.429 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCcceeeecccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.++..++.+ ...|+-.|.||||||++|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445555554 4567888999999999873
No 194
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=61.48 E-value=4.5e+02 Score=33.69 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHh
Q 001229 937 HYADLQEKYNDLV---SRHRAIMEGVAEVKRAAAKA 969 (1119)
Q Consensus 937 ~y~~l~e~~~~l~---~~hr~i~~gi~~vk~aaaka 969 (1119)
+-.+|++++.++- .-..++.+.+..=|-+|+||
T Consensus 123 rL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRA 158 (617)
T PF15070_consen 123 RLAELEEELERLQEQQEDRQKLLEQLQSDKATASRA 158 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Confidence 3344454444432 23555666666666666665
No 195
>PRK10869 recombination and repair protein; Provisional
Probab=61.10 E-value=1.2e+02 Score=38.08 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhh
Q 001229 1053 KKQIDKLKRKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1053 ~~q~~klk~kh~~e~~t~~~~lae 1076 (1119)
--.|.+|||||...|..+-.|..+
T Consensus 305 l~~l~~L~rKyg~~~~~~~~~~~~ 328 (553)
T PRK10869 305 LSKQISLARKHHVSPEELPQHHQQ 328 (553)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 346778999999877777666644
No 196
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=60.72 E-value=5.3 Score=44.88 Aligned_cols=129 Identities=24% Similarity=0.446 Sum_probs=71.5
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcc-eeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVS-LLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFS 210 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~t-IfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~ 210 (1119)
..+|...+-+...+.+.+.+ ..++.|..+- ++-||..|+|||.++.+ ++.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVka------------------------ll~ 74 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKA------------------------LLN 74 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHH------------------------HHH
Confidence 34555555444444444443 5677887543 67799999999988744 222
Q ss_pred HHHHhhhccCCCceeEEEEEEEEeeeccccccccccCCCcceeeeCC-CCCeEecCcEEEEc-CCHHHHHHHHHHHhhcC
Q 001229 211 EIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDP-KHGFYVENLTEEYV-TSYEDITQILIKGLSSR 288 (1119)
Q Consensus 211 ~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~~~~L~IrEd~-~~Gv~V~gLtev~V-~S~eE~l~LL~~G~~nR 288 (1119)
.... .+ +-.+||..+.+.||-.--. .++..| +.=+++.+|+-..- .++..+..+|+-|...|
T Consensus 75 ~y~~-------~G------LRlIev~k~~L~~l~~l~~---~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~ 138 (249)
T PF05673_consen 75 EYAD-------QG------LRLIEVSKEDLGDLPELLD---LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR 138 (249)
T ss_pred HHhh-------cC------ceEEEECHHHhccHHHHHH---HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC
Confidence 2211 01 4568888887766642000 001111 11234555553322 35677777777776555
Q ss_pred cccccCCCCCCCCceEEE
Q 001229 289 KVGATSVNSKSSRSHIVF 306 (1119)
Q Consensus 289 ~tasT~~N~~SSRSHaIF 306 (1119)
....-+..+|.|-|.|-
T Consensus 139 -P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 139 -PDNVLIYATSNRRHLVP 155 (249)
T ss_pred -CCcEEEEEecchhhccc
Confidence 45555667778888763
No 197
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=60.59 E-value=1.2e+02 Score=35.85 Aligned_cols=134 Identities=25% Similarity=0.371 Sum_probs=69.7
Q ss_pred CCCchHHHHHHHhhhhhhcccceehhhhhhhhHHHhhH---HHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHH
Q 001229 864 RPNTAEELEKERERWTEMESEWICLTDELRVDIESSRR---HAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYAD 940 (1119)
Q Consensus 864 ~~~~~~~~~~er~~w~e~es~wi~lt~elr~~le~~r~---~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~ 940 (1119)
.||--+-||+||.+.+- .+--+++.-|. --.|++|.|+.||+--+-|- -|-|+---.++-.-+|
T Consensus 137 GDDlt~~LEKEReqL~Q----------QiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis---~mLilEcKka~~KaaE 203 (561)
T KOG1103|consen 137 GDDLTAHLEKEREQLQQ----------QIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQIS---LMLILECKKALLKAAE 203 (561)
T ss_pred cchHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34555678888877552 22233333222 12467788888887666542 2333333333333344
Q ss_pred HHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcccCcc-----hhhHHHHHHHHhhhhhhhHHHH---HHHHHhhHHHH
Q 001229 941 LQEKYNDLVSRH----RAIMEGVAEVKRAAAKAGAKGHG-----SRFAKSVAAELSALRVERDRER---EFLKKENKSLK 1008 (1119)
Q Consensus 941 l~e~~~~l~~~h----r~i~~gi~~vk~aaakag~~g~~-----~~f~~~laae~s~lr~ereke~---~~~~~en~~l~ 1008 (1119)
+--|--++.-+- .++--|-+ .|+---.+|-. -+.|.-|--|..-||+|+|+|- +.||+||.+|+
T Consensus 204 egqKA~ei~Lklekdksr~~k~ee----e~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLk 279 (561)
T KOG1103|consen 204 EGQKAEEIMLKLEKDKSRTKKGEE----EAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLK 279 (561)
T ss_pred hhhhHHHHHHhhccCccccCCChH----HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222111 01111111 11111122311 1366667777888999988864 56999999999
Q ss_pred HHhhhh
Q 001229 1009 IQLRDT 1014 (1119)
Q Consensus 1009 ~qlrdt 1014 (1119)
.-.||-
T Consensus 280 eiVkdl 285 (561)
T KOG1103|consen 280 EIVKDL 285 (561)
T ss_pred HHHhhh
Confidence 888874
No 198
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=60.52 E-value=3.1 Score=44.80 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=14.6
Q ss_pred ceeeecccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~ 182 (1119)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 36778999999999984
No 199
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=60.40 E-value=4.8e+02 Score=33.93 Aligned_cols=150 Identities=23% Similarity=0.262 Sum_probs=93.0
Q ss_pred hhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001229 890 DELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKA 969 (1119)
Q Consensus 890 ~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaaka 969 (1119)
-+||--.|.++++-|+++. ..++|.-++. -+-..|--++||-.-..|.+-|-..-.-++-.-|.=.
T Consensus 105 a~lrq~eekn~slqerLel-------aE~~l~qs~r-----ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~-- 170 (916)
T KOG0249|consen 105 ADLRQNEEKNRSLQERLEL-------AEPKLQQSLR-----AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEE-- 170 (916)
T ss_pred hhhchhHHhhhhhhHHHHH-------hhHhhHhHHh-----hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--
Confidence 3678888899999888753 2334444443 3456667788888877776655544444443333211
Q ss_pred cccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHH
Q 001229 970 GAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQEN 1049 (1119)
Q Consensus 970 g~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~ 1049 (1119)
=+.-+++||--+|- .+ +-|..=..-|-||++ -||--|-.--..|-++..-++||.
T Consensus 171 --------~~qe~naeL~rarq-------re-emneeh~~rlsdtvd---------ErlqlhlkermaAle~kn~L~~e~ 225 (916)
T KOG0249|consen 171 --------QLEELNAELQRARQ-------RE-KMNEEHNKRLSDTVD---------ERLQLHLKERMAALEDKNRLEQEL 225 (916)
T ss_pred --------HHHHHHHHHHHHHH-------HH-HhhhhhccccccccH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334555543332 11 122223345789988 455555555566777888888888
Q ss_pred HHHHHHHHHH---HhhhhhHHHHHHHHHhhcC
Q 001229 1050 EKLKKQIDKL---KRKHKMEMITMKQYLAESK 1078 (1119)
Q Consensus 1050 ~k~~~q~~kl---k~kh~~e~~t~~~~laes~ 1078 (1119)
+-+|||++.+ |++|...++.|.+.++.=+
T Consensus 226 ~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 226 ESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8888887654 7789999999988876544
No 200
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=60.35 E-value=6 Score=44.78 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=26.6
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
-+||.+.+ |.++...+ ...+-.|....++-||++|+|||+++..
T Consensus 12 ~~~~~~~g----~~~~~~~L----~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 12 ALLEDILG----QDEVVERL----SRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred CcHHHhcC----CHHHHHHH----HHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 35666654 44443332 2222244434588899999999998743
No 201
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=60.24 E-value=3.2 Score=39.75 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=13.2
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 577999999999975
No 202
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=60.21 E-value=3.2 Score=49.14 Aligned_cols=51 Identities=25% Similarity=0.460 Sum_probs=32.2
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHH-HHHc--C--CCcceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVK-NALA--G--YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~--G--yN~tIfAYGQTGSGKTyTM 181 (1119)
.+.||.|.+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 456666665555445566555555544 2232 2 2346889999999999875
No 203
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=60.18 E-value=3.8 Score=45.16 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=18.0
Q ss_pred HcCCCcceeeeccccccccccccC
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
+.-.++.++..|..|||||+||..
T Consensus 9 i~~~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 9 IRSTEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp HHS-SSEEEEEE-TTSSHHHHHHH
T ss_pred HhCCCCCEEEEeCCCCCchHHHHH
Confidence 333778888999999999999965
No 204
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=59.52 E-value=5.2 Score=46.38 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCcceeeecccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.++..++.+ ...|+-.|.||||||++|.
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 455656655 3556677999999998763
No 205
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.51 E-value=5e+02 Score=34.97 Aligned_cols=67 Identities=28% Similarity=0.285 Sum_probs=42.3
Q ss_pred HHHHHhhHHHHHHhh-hhHHHHhhhhhhhhhhhhHHHHHHHHHH------hhhhhHHHHHHHHHHHHHHHhhhh
Q 001229 998 EFLKKENKSLKIQLR-DTAEAVHAAGELLVRLKEAEQAASVAEA------NFSGVQQENEKLKKQIDKLKRKHK 1064 (1119)
Q Consensus 998 ~~~~~en~~l~~qlr-dtaeav~aagellvrl~eaeea~~~a~~------~~~~~~qe~~k~~~q~~klk~kh~ 1064 (1119)
+.+++|.+-.+.++. -|+++|.--++|=++-++-|+.-...+. +....+|...+|..-+-+||++.+
T Consensus 423 e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~ 496 (1174)
T KOG0933|consen 423 EHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELD 496 (1174)
T ss_pred HHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666654 3677777777777777777766555543 445566666666666666665543
No 206
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=59.34 E-value=2.3e+02 Score=36.60 Aligned_cols=126 Identities=24% Similarity=0.338 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHH--HhhhhHHH--------------HHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHhcccCcc
Q 001229 915 KVTEELDDALSRA--VLGHARMV--------------EHYADLQEKYNDLVSRHRAIMEG---VAEVKRAAAKAGAKGHG 975 (1119)
Q Consensus 915 ~c~eel~~al~~a--~~ghar~~--------------e~y~~l~e~~~~l~~~hr~i~~g---i~~vk~aaakag~~g~~ 975 (1119)
.|.|+|+.|-+-+ |.-|.+.| |||--|++.|.+-..+.+....- ++||=..-+
T Consensus 897 E~~E~L~~a~e~~~fI~qhG~tls~LEpia~~LqsDPe~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~-------- 968 (1480)
T COG3096 897 EIRERLDEAQEAARFIQQHGNTLSKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRA-------- 968 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Confidence 6889999887654 66777765 79999999999988887766543 344433221
Q ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001229 976 SRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQ 1055 (1119)
Q Consensus 976 ~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q 1055 (1119)
-|+-+=+ ..+-.||-.|-.|||- ||-.||.--+.+.+..-..++....-.+-
T Consensus 969 -HF~Y~ds--------------~~~l~e~sdLnekLr~-------------rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqv 1020 (1480)
T COG3096 969 -HFSYSDS--------------AEMLSENSDLNEKLRQ-------------RLEQAEAERTRAREQLRQHQAQLSQYNQV 1020 (1480)
T ss_pred -ccccchh--------------hhhhcccchhhHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332222 2334577777778874 44444444555555555555555666667
Q ss_pred HHHHHhhhhhHHHHHHHHHhh
Q 001229 1056 IDKLKRKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1056 ~~klk~kh~~e~~t~~~~lae 1076 (1119)
+-.||..|+..+.++|.+.-|
T Consensus 1021 l~~LksS~~~K~~~l~El~qE 1041 (1480)
T COG3096 1021 LASLKSSYDTKKELLNELQQE 1041 (1480)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 788999999999999988754
No 207
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=59.23 E-value=1.9e+02 Score=35.17 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=66.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhh
Q 001229 929 LGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKEN 1004 (1119)
Q Consensus 929 ~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en 1004 (1119)
-|.|+|.-....|.+.-..||.|=.-+++-|++++|-++.-|||= +-+...++..||++++.|=.+=.+|++.|.
T Consensus 203 s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp-~~~qLe~v~kdi~~a~keL~~m~~~i~~eK 277 (426)
T smart00806 203 SNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRP-SKKQLETVQKELETARKELKKMEEYIDIEK 277 (426)
T ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 689999999999999999999999999999999999999999998 569999999999999988776555555444
No 208
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=59.15 E-value=5.2 Score=41.90 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=17.5
Q ss_pred HHHHHHcCCCcceeeeccccccccccccC
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.|..++..-. ..+..|+.|||||+|+..
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 3444443333 466789999999998754
No 209
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=58.91 E-value=1.8e+02 Score=37.52 Aligned_cols=70 Identities=24% Similarity=0.379 Sum_probs=47.8
Q ss_pred hhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001229 891 ELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAG 970 (1119)
Q Consensus 891 elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag 970 (1119)
.+..+|+.-+--.++...+|+....++..|.+=+. .|++++-+-..|...-..+.+.
T Consensus 186 ~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~------------ 242 (670)
T KOG0239|consen 186 DLVTELEHVTNSISELESVLKSAQEERRVLADSLG-----------NYADLRRNIKPLEGLESTIKKK------------ 242 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----------hhhhHHHhhhhhhhhhhHHHHH------------
Confidence 45577788888888888888886666666655544 7777777776666655544443
Q ss_pred ccCcchhhHHHHHHHHhhhhh
Q 001229 971 AKGHGSRFAKSVAAELSALRV 991 (1119)
Q Consensus 971 ~~g~~~~f~~~laae~s~lr~ 991 (1119)
++.|-.++..|+.
T Consensus 243 --------i~~l~~~l~~l~~ 255 (670)
T KOG0239|consen 243 --------IQALQQELEELKA 255 (670)
T ss_pred --------HHHHHHHHHHHHH
Confidence 6777777776665
No 210
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=58.83 E-value=20 Score=39.29 Aligned_cols=70 Identities=27% Similarity=0.253 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc---cCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHH
Q 001229 940 DLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGA---KGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAE 1016 (1119)
Q Consensus 940 ~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~---~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtae 1016 (1119)
+|-.-|+==|+|-+++|.-=+|||.-+|.|-+ ||++ .||.-| ++|+ =.--++||+---|--|-|+
T Consensus 103 ~~~k~h~LPlARIkkvMKtdedVkMisaEaPvlFak~~E-iFI~EL-----TmRA------W~~ae~NkRRtLQksDia~ 170 (286)
T COG5208 103 ILLKDHNLPLARIKKVMKTDEDVKMISAEAPVLFAKITE-IFIEEL-----TMRA------WINAEENKRRTLQKSDIAA 170 (286)
T ss_pred HHHHhccCcHHHHHHHHhcccchhheecccchHHHHHHH-HHHHHH-----HHHH------HHHHhHhhhhHHHHHHHHH
Confidence 34445566688889999999999999988865 5554 566544 3343 1224678888889999999
Q ss_pred HHhhh
Q 001229 1017 AVHAA 1021 (1119)
Q Consensus 1017 av~aa 1021 (1119)
||+-.
T Consensus 171 Av~kS 175 (286)
T COG5208 171 AVKKS 175 (286)
T ss_pred HHHHH
Confidence 99864
No 211
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.56 E-value=87 Score=29.09 Aligned_cols=51 Identities=29% Similarity=0.307 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHH
Q 001229 934 MVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLK 1008 (1119)
Q Consensus 934 ~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~ 1008 (1119)
.+|..-.|+.||..++..=...+.-|++.|.-..... .|++.|+.||..|+
T Consensus 2 ~~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~------------------------~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 2 SLELLEQLEEKIQQAVETIALLQMENEELKEKNNELK------------------------EENEELKEENEQLK 52 (72)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------------------HHHHHHHHHHHHHH
Confidence 4678889999999999988888888888876543322 45666777777666
No 212
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=58.08 E-value=16 Score=46.99 Aligned_cols=18 Identities=44% Similarity=0.647 Sum_probs=15.4
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
|-.|+.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 566788899999999876
No 213
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.94 E-value=5.7e+02 Score=33.73 Aligned_cols=90 Identities=21% Similarity=0.223 Sum_probs=54.4
Q ss_pred HHHHHHHhhhhhhhHH---HHHHHHHhh---HHHHHHhhhhHH-HHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 001229 980 KSVAAELSALRVERDR---EREFLKKEN---KSLKIQLRDTAE-AVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKL 1052 (1119)
Q Consensus 980 ~~laae~s~lr~erek---e~~~~~~en---~~l~~qlrdtae-av~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~ 1052 (1119)
+..--||-+++.|-++ +..+|-++- .....|.+-|++ |--+-|-+++=|+.-|+++..-++-+..-- -+..+
T Consensus 733 ~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~-~l~~~ 811 (970)
T KOG0946|consen 733 KTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEEST-RLQEL 811 (970)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhh-HHHHH
Confidence 3444566777776554 344455554 455667788887 888889999999999988887555111110 11111
Q ss_pred HHHHHHHHhhhhhHHHHHHHHH
Q 001229 1053 KKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1053 ~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
-.++ .+++.+|.||.++.
T Consensus 812 q~e~----~~~keq~~t~~~~t 829 (970)
T KOG0946|consen 812 QSEL----TQLKEQIQTLLERT 829 (970)
T ss_pred HHHH----HHHHHHHHHHHHHH
Confidence 2222 34567777777766
No 214
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=57.87 E-value=4.6e+02 Score=32.61 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=17.3
Q ss_pred HHHhhhhhhhHHHHHHHHHhhHHHHHHh
Q 001229 984 AELSALRVERDREREFLKKENKSLKIQL 1011 (1119)
Q Consensus 984 ae~s~lr~ereke~~~~~~en~~l~~ql 1011 (1119)
.|+-.||. |+.++++|+..|+.|+
T Consensus 274 ~el~~l~~----E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 274 IELEELKQ----ERDHLQEEIQLLERQI 297 (511)
T ss_pred hcchhhHH----HHHHHHHHHHHHHHHH
Confidence 78888877 5566677777777776
No 215
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=57.38 E-value=7.8 Score=46.17 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=40.5
Q ss_pred CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHc--C--CCcceeeecccccccccc
Q 001229 129 ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALA--G--YNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 129 ~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~--G--yN~tIfAYGQTGSGKTyT 180 (1119)
.+++.||.+.+...--..+.+.++..++.+++. | .---|.-||+.|+|||+.
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 356889998877777778888888888888874 2 233467799999999986
No 216
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=57.31 E-value=3 Score=48.63 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=32.0
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHH-HHc--CC--Ccceeeecccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKN-ALA--GY--NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~-vL~--Gy--N~tIfAYGQTGSGKTyTM~ 182 (1119)
..+.||.|.+-+..-+.+.+.+..|+... .+. |. ...|+-||++|+|||+++-
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 34566666665544455555554444332 221 22 3458899999999998863
No 217
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=57.14 E-value=18 Score=40.38 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=33.2
Q ss_pred EcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCccccceeEEecCCCCC
Q 001229 270 YVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSKTSRICLVDIAGADR 340 (1119)
Q Consensus 270 ~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER 340 (1119)
.+.+++++..++...... ..+. ...-|.-++.|.|... ..-.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p------------~~~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSP------------HVLNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCC------------CCCceEEEeCCCccc
Confidence 346788888888776432 1111 1234566788888532 123589999999864
No 218
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=57.02 E-value=4.3e+02 Score=32.00 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001229 920 LDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEG 958 (1119)
Q Consensus 920 l~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~g 958 (1119)
++.-+--|-+--||.-+||-|||-..-.|.+..+...+-
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq 166 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQ 166 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455677888999999999998888888777665443
No 219
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.87 E-value=4.2e+02 Score=34.54 Aligned_cols=65 Identities=25% Similarity=0.298 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhH
Q 001229 936 EHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTA 1015 (1119)
Q Consensus 936 e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdta 1015 (1119)
+....|.|||.+..++|..++.=++.|-+.+ .+.... -| ++ | +.+++|-+.++.||++-+
T Consensus 593 ~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l-~~~~P~-LS-------------~A----E-r~~~~EL~~~~~~l~~l~ 652 (717)
T PF10168_consen 593 ESAEKLAERYEEAKDKQEKLMKRVDRVLQLL-NSQLPV-LS-------------EA----E-REFKKELERMKDQLQDLK 652 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCC-CC-------------HH----H-HHHHHHHHHHHHHHHHHH
Confidence 5566788899999999999999999998876 343333 11 22 2 224556666666666655
Q ss_pred HHHhh
Q 001229 1016 EAVHA 1020 (1119)
Q Consensus 1016 eav~a 1020 (1119)
..+.-
T Consensus 653 ~si~~ 657 (717)
T PF10168_consen 653 ASIEQ 657 (717)
T ss_pred HHHHH
Confidence 55444
No 220
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=56.41 E-value=1.3e+02 Score=29.57 Aligned_cols=109 Identities=21% Similarity=0.330 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--hccc-----------CcchhhHHHHHHHHhhhhhhhHHHHHHH
Q 001229 934 MVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAK--AGAK-----------GHGSRFAKSVAAELSALRVERDREREFL 1000 (1119)
Q Consensus 934 ~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaak--ag~~-----------g~~~~f~~~laae~s~lr~ereke~~~~ 1000 (1119)
+.++|-.|+++.+.|-..|..+...+.+++.+-.- .-.. |+ +.|+.
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~-~~~~~-------------------- 62 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGA-GLFVK-------------------- 62 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCC-ceEEE--------------------
Confidence 56778888888888888888888888887643211 1000 10 01111
Q ss_pred HHhhHHHHHHhhhhHHHHhhhh-hhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001229 1001 KKENKSLKIQLRDTAEAVHAAG-ELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQ 1072 (1119)
Q Consensus 1001 ~~en~~l~~qlrdtaeav~aag-ellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~ 1072 (1119)
.-+.|+-+..---| ...|. +..++|...-++|...++.+.+++.++++++..++.+=...|.+
T Consensus 63 --------~~i~~~~~v~v~iG~~~~ve-~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 63 --------AEVKDDDKVLVDLGTGVYVE-KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred --------EEECCCCEEEEEecCCEEEE-ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11224444444456 77777 57888999999999999999999999999998877655444444
No 221
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=56.41 E-value=6.3 Score=45.84 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCcceeeecccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.++..++.+. ..|+-.|.||||||++|-
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4444555432 347788999999999983
No 222
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=56.33 E-value=6.2e+02 Score=33.67 Aligned_cols=113 Identities=27% Similarity=0.374 Sum_probs=58.2
Q ss_pred hhHHHhhHHHHHHHHH-HhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------H-HHHHHHHHHHHhHHHHHHH
Q 001229 894 VDIESSRRHAERVESE-LRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKY------N-DLVSRHRAIMEGVAEVKRA 965 (1119)
Q Consensus 894 ~~le~~r~~~ek~~~e-l~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~------~-~l~~~hr~i~~gi~~vk~a 965 (1119)
.++|.++.+.|..+.. |-.|+ =-++|+++..--..-|+-|+++|+|.+-+- + +.-..--..-+-|+.++++
T Consensus 403 ~q~eka~~~~ee~e~~~l~~e~-ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~ 481 (980)
T KOG0980|consen 403 TQLEKAQVLVEEAENKALAAEN-RYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRA 481 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333322 22333 346788888888888999999888876432 1 1112222233445555555
Q ss_pred HHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 001229 966 AAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA 1017 (1119)
Q Consensus 966 aakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea 1017 (1119)
+-++-.|- .+.+--++.+|. |-+.|--|-+.||.-|..++++
T Consensus 482 ~~~~~~K~------e~~~~~le~l~~----El~~l~~e~~~lq~~~~~~~qs 523 (980)
T KOG0980|consen 482 AGRAETKT------ESQAKALESLRQ----ELALLLIELEELQRTLSNLAQS 523 (980)
T ss_pred HHHHHHhh------HHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHH
Confidence 55544343 233444444443 3344445555566556556554
No 223
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=56.05 E-value=4.1 Score=39.04 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=13.8
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999865
No 224
>PRK04863 mukB cell division protein MukB; Provisional
Probab=55.99 E-value=8e+02 Score=34.83 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-hhcCCCcccccCcccc
Q 001229 1028 LKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL-AESKLPESALQPLYRE 1090 (1119)
Q Consensus 1028 l~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l-aes~lp~~~~~~~~~~ 1090 (1119)
+-+.+.-...-+++...++++...+++++++++..++.-=..++.++ ..++.+.+....+.++
T Consensus 437 dEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~ 500 (1486)
T PRK04863 437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARE 500 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 34444444555555566666666666666666666655555555554 4455666665555543
No 225
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.98 E-value=1.4e+02 Score=32.93 Aligned_cols=21 Identities=43% Similarity=0.301 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhhHHHHHHhhh
Q 001229 993 RDREREFLKKENKSLKIQLRD 1013 (1119)
Q Consensus 993 reke~~~~~~en~~l~~qlrd 1013 (1119)
++.+-.-|+.||+.|+.||-.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444478888888777765
No 226
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.72 E-value=1.3e+02 Score=39.54 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=49.9
Q ss_pred HHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhh------HHHHHHHHH
Q 001229 1001 KKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKM------EMITMKQYL 1074 (1119)
Q Consensus 1001 ~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~------e~~t~~~~l 1074 (1119)
..+-.+||.++|||+++|.- |||+=--+-.---|-+..=+|.+-.++|+.||++|... +-.|++-.|
T Consensus 274 ~~~~~~Lq~~~~d~~~~vk~-------Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll 346 (951)
T KOG2115|consen 274 MTSLHNLQKELRDTMSEVKE-------LRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLL 346 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 46788999999999998753 22222222233345556667888889999999998653 445666667
Q ss_pred hhcCCCc
Q 001229 1075 AESKLPE 1081 (1119)
Q Consensus 1075 aes~lp~ 1081 (1119)
++.+.++
T Consensus 347 ~~~d~~~ 353 (951)
T KOG2115|consen 347 STQDFVG 353 (951)
T ss_pred hcccHHH
Confidence 7776664
No 227
>PTZ00424 helicase 45; Provisional
Probab=55.71 E-value=6.2 Score=45.92 Aligned_cols=27 Identities=37% Similarity=0.562 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCcceeeecccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
..+..+++|.|. +..++||||||.+..
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~~ 83 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHHH
Confidence 445667789884 567999999998653
No 228
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=55.60 E-value=6.9 Score=41.23 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCcceeeecccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
+++..++.. ...+.-.|+||||||.+|.
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 455555543 3456778999999999874
No 229
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.31 E-value=9.8 Score=45.37 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.5
Q ss_pred Ccceeeecccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~ 182 (1119)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578899999999999984
No 230
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=55.23 E-value=3.7e+02 Score=30.74 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=54.7
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhH
Q 001229 978 FAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQ 1046 (1119)
Q Consensus 978 f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~ 1046 (1119)
|..-++.+|+.|+.+.+.+|+-..+.+..|+..|..+--.|+-+.- .-.+++.++..|.+++..|+
T Consensus 93 l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK---~Y~~~~~~~~~ar~K~~~a~ 158 (264)
T cd07654 93 YRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRK---TYFEREQVAHLAREKAADVQ 158 (264)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHH
Confidence 5566788999999999999999999999999999998877777654 34688888888888877655
No 231
>PF13479 AAA_24: AAA domain
Probab=55.00 E-value=4.6 Score=43.62 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=17.2
Q ss_pred CcceeeeccccccccccccCC
Q 001229 164 NVSLLSYGQTGSGKTYTMWGP 184 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~G~ 184 (1119)
+..++.||++|+|||++...-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 346889999999999987654
No 232
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=54.80 E-value=4.8e+02 Score=31.95 Aligned_cols=118 Identities=18% Similarity=0.295 Sum_probs=62.2
Q ss_pred hhhhhhhHHHhhHHHHHHHHHHhHHH-hhHHHHHHHHHH-----H-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001229 889 TDELRVDIESSRRHAERVESELRLEK-KVTEELDDALSR-----A-VLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAE 961 (1119)
Q Consensus 889 t~elr~~le~~r~~~ek~~~el~~ek-~c~eel~~al~~-----a-~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~ 961 (1119)
...||.||-.-|++-.-...+...-- .|-+.+. +++- + -.|.++|-.-...|.+....|+.+=.-.++-|++
T Consensus 153 v~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~-~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~ 231 (424)
T PF03915_consen 153 VQSLRRELAVLRQLYSEFQSEVKESISSIREKIK-KVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVED 231 (424)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888877776554444443321 1222222 2222 1 3678999999999999999999999999999999
Q ss_pred HHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHH
Q 001229 962 VKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLK 1008 (1119)
Q Consensus 962 vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~ 1008 (1119)
++|-++.-|+|=. -+..++++-||+.+..+=++=..|+..+--.++
T Consensus 232 LRkDV~~RgvRp~-~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~Wk 277 (424)
T PF03915_consen 232 LRKDVVQRGVRPS-PKQLETVAKDISRASKELKKMKEYIKTEKPIWK 277 (424)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999984 689999999999998866554455544444433
No 233
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.40 E-value=3.1e+02 Score=29.70 Aligned_cols=117 Identities=26% Similarity=0.243 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 001229 938 YADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA 1017 (1119)
Q Consensus 938 y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea 1017 (1119)
...++.++..|-+....+..-|.+++.....+ ..|-+- +.-|.+.-.+.+.|+++++.|+.+|. .-
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~----------~~eR~~~l~~l~~l~~~~~~l~~el~---~~ 129 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREE----------SEEREELLEELEELKKELKELKKELE---KY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc----------cHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 34566777777777777788888888777665 333211 13455556677888899999999987 22
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1018 VHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1018 v~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
...=.+.+-+++++=.-+-.| |..=++..+-=..=+++|+.++-.++++.+
T Consensus 130 ~~~Dp~~i~~~~~~~~~~~~~------anrwTDNI~~l~~~~~~k~~~~~~~i~k~f 180 (188)
T PF03962_consen 130 SENDPEKIEKLKEEIKIAKEA------ANRWTDNIFSLKSYLKKKFGMDEEDIRKEF 180 (188)
T ss_pred HhcCHHHHHHHHHHHHHHHHH------HHHHHhhHHHHHHHHHHhcCCCHHHHHHHc
Confidence 223344555554432222211 222344455555556666766666666443
No 234
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=54.19 E-value=7.9 Score=40.47 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=18.7
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.++.++.|.| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455556776 677899999999873
No 235
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=54.15 E-value=4.8 Score=42.72 Aligned_cols=18 Identities=44% Similarity=0.551 Sum_probs=13.7
Q ss_pred ceeeeccccccccccccC
Q 001229 166 SLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~G 183 (1119)
-++.+|+||||||++|..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 588999999999998853
No 236
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=54.14 E-value=3.5e+02 Score=30.08 Aligned_cols=99 Identities=13% Similarity=0.200 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHhcccCcchhhHHHHHHHH---hhhhhhhHHHHHHH
Q 001229 934 MVEHYADLQEKYNDLVSRHRA----------IMEGVAEVKRAAAKAGAKGHGSRFAKSVAAEL---SALRVERDREREFL 1000 (1119)
Q Consensus 934 ~~e~y~~l~e~~~~l~~~hr~----------i~~gi~~vk~aaakag~~g~~~~f~~~laae~---s~lr~ereke~~~~ 1000 (1119)
|+-..+.+|+.|-.-|.+.-+ +..+...|+....+-|- ....|++.|-.++ ..++.+-.++|+.+
T Consensus 27 f~keRa~iE~eYak~L~kLak~~~~~~e~gsl~~aw~~i~~e~e~~a~--~H~~la~~L~~~v~~l~~~~~~~~~~~K~~ 104 (239)
T cd07647 27 FLKQRAKAEEDYGKALLKLSKSAGPGDEIGTLKSSWDSLRKETENVAN--AHIQLAQSLREEAEKLEEFREKQKEERKKT 104 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777766655533 22333344444433222 1235666555444 33334444556666
Q ss_pred HHhhHHHHHHhhhhHHHHhhhhhhhh-hhhhHHHH
Q 001229 1001 KKENKSLKIQLRDTAEAVHAAGELLV-RLKEAEQA 1034 (1119)
Q Consensus 1001 ~~en~~l~~qlrdtaeav~aagellv-rl~eaeea 1034 (1119)
.+....++..+.++-..|.-|=+--- +-||+|.|
T Consensus 105 ~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a 139 (239)
T cd07647 105 EDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKA 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555555544433332 22444444
No 237
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=53.95 E-value=5.6e+02 Score=32.42 Aligned_cols=196 Identities=21% Similarity=0.287 Sum_probs=107.1
Q ss_pred HHHHHHHhhhhhhccc----------ceehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHH-hhhhHHHHH
Q 001229 869 EELEKERERWTEMESE----------WICLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAV-LGHARMVEH 937 (1119)
Q Consensus 869 ~~~~~er~~w~e~es~----------wi~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~-~ghar~~e~ 937 (1119)
++++.=|.+|.+++.. |-..-.+|-+++...+++..+++-|++-=|+-..=|-+.|++|= +=|+-++ -
T Consensus 120 ~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl-l 198 (546)
T KOG0977|consen 120 EELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL-L 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-H
Confidence 4455556666666443 44444444455555566555555555555544444444443321 1111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhh--------H
Q 001229 938 YADLQEKYNDLVSRHRAIM----EGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKEN--------K 1005 (1119)
Q Consensus 938 y~~l~e~~~~l~~~hr~i~----~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en--------~ 1005 (1119)
-.|+|-+-.+|+++-.-+. .-|.+..+-+++.=..+.---|-+=|++=|--+|++-|.=...=|++. .
T Consensus 199 r~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~ 278 (546)
T KOG0977|consen 199 RVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQ 278 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2456666666666666555 578999999999887554334999999999999999887655555433 3
Q ss_pred HHHHHhhhhHHHHhhhhhhhhhhhhHHHH----HHHHHHhhhhhHHHHHHHHHHHHHHHhhhhh
Q 001229 1006 SLKIQLRDTAEAVHAAGELLVRLKEAEQA----ASVAEANFSGVQQENEKLKKQIDKLKRKHKM 1065 (1119)
Q Consensus 1006 ~l~~qlrdtaeav~aagellvrl~eaeea----~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~ 1065 (1119)
.++.+---....+..|=|=|.|+|.-=-. ++-.+.+-...++..+.|+-|++.-+|-|+.
T Consensus 279 ~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~ 342 (546)
T KOG0977|consen 279 EIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQ 342 (546)
T ss_pred HHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhh
Confidence 33332222333344455555555542211 1222334444455555555555555555543
No 238
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=53.75 E-value=93 Score=34.73 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHH
Q 001229 996 EREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAE 1032 (1119)
Q Consensus 996 e~~~~~~en~~l~~qlrdtaeav~aagellvrl~eae 1032 (1119)
|...+++.+..|+..+....+.+...-+-+..+|++=
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666555543
No 239
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.24 E-value=1.7e+02 Score=32.85 Aligned_cols=58 Identities=34% Similarity=0.355 Sum_probs=38.7
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001229 995 REREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRK 1062 (1119)
Q Consensus 995 ke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~k 1062 (1119)
+|.+-|.+||..|+..+ |+|| -||++-|--.+.-++-+-...-|-.+|++..+.|--+
T Consensus 149 ~EkeeL~~eleele~e~----ee~~------erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 149 KEKEELLKELEELEAEY----EEVQ------ERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 45566777887777664 3443 3677666666666666667777777777777777655
No 240
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.09 E-value=3.7e+02 Score=36.02 Aligned_cols=165 Identities=21% Similarity=0.324 Sum_probs=102.2
Q ss_pred HHHhHHHhhHH------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHH
Q 001229 908 SELRLEKKVTE------ELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKS 981 (1119)
Q Consensus 908 ~el~~ek~c~e------el~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~ 981 (1119)
++|+.||+|-| ||+|| ..+-..|++.++...++-+...+...+|--.-.+ -+ +=++.
T Consensus 214 qkldk~rr~lEYtiYdrEl~E~-----------~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~---~~---~~i~e 276 (1200)
T KOG0964|consen 214 QKLDKERRSLEYTIYDRELNEI-----------NGELERLEEDRSSAPEESEQYIDALDKVEDESED---LK---CEIKE 276 (1200)
T ss_pred HHHHHhHhhhhhhhhhhHHHHH-----------HHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHH---HH---hHHHH
Confidence 57888888854 55554 4555666666666666665554444443322222 22 23677
Q ss_pred HHHHHhhhhhhhHH----HHHHH------HHhhHHHHHHhhhhHH----HHhhhhhhhhhhhhHHHHHHHHHHhhhhhHH
Q 001229 982 VAAELSALRVERDR----EREFL------KKENKSLKIQLRDTAE----AVHAAGELLVRLKEAEQAASVAEANFSGVQQ 1047 (1119)
Q Consensus 982 laae~s~lr~erek----e~~~~------~~en~~l~~qlrdtae----av~aagellvrl~eaeea~~~a~~~~~~~~q 1047 (1119)
|-+.|..||+|+|. |-+++ .=+.+.||.|+----+ |.|---++.--.-|-++-++.-+-++..+..
T Consensus 277 le~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ 356 (1200)
T KOG0964|consen 277 LENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVD 356 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 88899999996654 22222 2245666666533322 3444445554555566666677777778888
Q ss_pred HHHHHHHHHHHHHhh-----------------------hhhHHHHHHHHHhhcCCCcccccCccc
Q 001229 1048 ENEKLKKQIDKLKRK-----------------------HKMEMITMKQYLAESKLPESALQPLYR 1089 (1119)
Q Consensus 1048 e~~k~~~q~~klk~k-----------------------h~~e~~t~~~~laes~lp~~~~~~~~~ 1089 (1119)
+...++++|-+|+.+ -..||..++..+...+-.++.|+--+.
T Consensus 357 ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~ 421 (1200)
T KOG0964|consen 357 EEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIE 421 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888888888762 246788888888877777777766544
No 241
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=52.81 E-value=9 Score=44.65 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCcceeeeccccccccccccC
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.++..++.+. ..|+..|.||||||.+|-.
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll~a 179 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFTNA 179 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHHHH
Confidence 4455555433 4477789999999998843
No 242
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=52.72 E-value=11 Score=42.69 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=15.0
Q ss_pred ceeeeccccccccccccC
Q 001229 166 SLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~G 183 (1119)
.|+-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566679999999999854
No 243
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=52.51 E-value=8.3e+02 Score=33.98 Aligned_cols=90 Identities=23% Similarity=0.267 Sum_probs=64.7
Q ss_pred HHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-
Q 001229 1001 KKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAE-----ANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL- 1074 (1119)
Q Consensus 1001 ~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~-----~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l- 1074 (1119)
-+++-..+.|.|--++++---=.|.-+++|.+.-...-. ..+..+.++..+|..+.++|...+.-=..+|+||=
T Consensus 990 ~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~ 1069 (1294)
T KOG0962|consen 990 IKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYES 1069 (1294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 344556667777778888777778888888877655433 34555668999999999999999998888999886
Q ss_pred hhcCCCcccccCcccc
Q 001229 1075 AESKLPESALQPLYRE 1090 (1119)
Q Consensus 1075 aes~lp~~~~~~~~~~ 1090 (1119)
+-.++-....+|-|.+
T Consensus 1070 ~i~~~k~eL~~~~~kd 1085 (1294)
T KOG0962|consen 1070 QIKKLKQELREKDFKD 1085 (1294)
T ss_pred HHHHHHHHhhhhhhcc
Confidence 4445555555566654
No 244
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=52.20 E-value=7.8 Score=46.45 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=19.5
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..+++|.| ++..++||||||.+.
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 4455678887 788899999999763
No 245
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=52.13 E-value=5.1 Score=38.62 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=13.5
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999976
No 246
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=52.06 E-value=2.6e+02 Score=31.40 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHH
Q 001229 939 ADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAV 1018 (1119)
Q Consensus 939 ~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav 1018 (1119)
+||-.|-.+|-..=..|..-++.++. +.+|+.-+..|+..|..||..=-+.||.=|. =.+|-|+|
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~----------ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~-----DIn~lE~i 68 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLEN----------EEKCLEEYRKEMEELLQERMAHVEELRQINQ-----DINTLENI 68 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 45555555555444556666666554 4578888888888887766554444443332 23445554
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001229 1019 HAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRK 1062 (1119)
Q Consensus 1019 ~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~k 1062 (1119)
++.|+..-...++-+..+..|..+||-+||.+++-
T Consensus 69 ---------Ikqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 69 ---------IKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777888888999999999999877
No 247
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=51.87 E-value=7.6 Score=45.58 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.++-.++.+. +.|+-.|.||||||+++
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3444455555 67888999999999887
No 248
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=51.79 E-value=8.7 Score=42.00 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=14.9
Q ss_pred CCcceeeeccccccccccccC
Q 001229 163 YNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM~G 183 (1119)
.+-.+++.|+.||||||.-..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a 38 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALA 38 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHH
T ss_pred hCCeEEEECCCCCcHHHHHHH
Confidence 556899999999999997643
No 249
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=51.79 E-value=10 Score=45.95 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=27.4
Q ss_pred EcCeecCCCCChHHHHHHhhHHHHHHH-Hc--CC--Ccceeeeccccccccccc
Q 001229 133 AFDSVLDSNSNQEDIFQVVGLPLVKNA-LA--GY--NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 133 ~FD~VFd~~asQeeVY~~v~~pLV~~v-L~--Gy--N~tIfAYGQTGSGKTyTM 181 (1119)
+|+.|.+-+..-+++.+.+..|+...- +. |. ...|+-||++|+|||++.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 444454433333445555544544321 22 22 234778999999999876
No 250
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=51.63 E-value=6.7 Score=46.12 Aligned_cols=46 Identities=26% Similarity=0.462 Sum_probs=31.1
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
..|.|+.|-+ |+++= .-|+..+.+-.-+.|+-+|.+||||||.+-+
T Consensus 12 ~~~pf~~ivG----q~~~k----~al~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 12 PVFPFTAIVG----QEEMK----LALILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCCHHHHhC----hHHHH----HHHHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 4689998877 44332 3344444443335688999999999998743
No 251
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.40 E-value=2.2e+02 Score=28.93 Aligned_cols=74 Identities=23% Similarity=0.432 Sum_probs=43.8
Q ss_pred CcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhh-hhHHHHHHHHHHhhhhhHHHHHH
Q 001229 973 GHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRL-KEAEQAASVAEANFSGVQQENEK 1051 (1119)
Q Consensus 973 g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl-~eaeea~~~a~~~~~~~~qe~~k 1051 (1119)
|...-.+.-|.++|.. +|-|...|++++..|..+ ||.|. -| ||+| ++.|+. .....+..+
T Consensus 12 ~~~~~~ve~L~s~lr~----~E~E~~~l~~el~~l~~~-r~~l~-----~E-iv~l~~~~e~~--------~~~~~~~~~ 72 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRR----LEGELASLQEELARLEAE-RDELR-----EE-IVKLMEENEEL--------RALKKEVEE 72 (120)
T ss_pred CchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHH-----HH-HHHHHHHHHHH--------HHHHHHHHH
Confidence 4455677888877754 566888899999888765 44432 23 3333 222222 233345566
Q ss_pred HHHHHHHHHhhhhh
Q 001229 1052 LKKQIDKLKRKHKM 1065 (1119)
Q Consensus 1052 ~~~q~~klk~kh~~ 1065 (1119)
|.++++.|..+|++
T Consensus 73 L~~el~~l~~ry~t 86 (120)
T PF12325_consen 73 LEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666654
No 252
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.28 E-value=13 Score=42.71 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=32.7
Q ss_pred HHHH-HHHcCCCcceeeeccccccccccccCCCCCCC-CCCCCCCCCCcHHHHH
Q 001229 154 PLVK-NALAGYNVSLLSYGQTGSGKTYTMWGPPSAMV-EDPSPRSKEGIVPRIF 205 (1119)
Q Consensus 154 pLV~-~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~-~~~s~~~~~GIIPRal 205 (1119)
.||. ++-+||.--|+|.|.||.|||..|---.+..+ ..++++..+++-.++.
T Consensus 31 QLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~ 84 (406)
T KOG3859|consen 31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQAN 84 (406)
T ss_pred HHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecc
Confidence 3444 44589999999999999999986633221111 2345555666544443
No 253
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=51.13 E-value=5.3 Score=40.69 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=12.5
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|-...++-+|..|+|||+.+
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp S-----EEE-B-TTSSHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHH
Confidence 566678999999999999875
No 254
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=51.08 E-value=3.9e+02 Score=29.79 Aligned_cols=47 Identities=32% Similarity=0.476 Sum_probs=35.0
Q ss_pred chhhHH---HHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhh
Q 001229 975 GSRFAK---SVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAA 1021 (1119)
Q Consensus 975 ~~~f~~---~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aa 1021 (1119)
+..|+. .+..||+.+..+=|+.|+.++++.+.++..+-|+-.|+.-|
T Consensus 81 h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKA 130 (234)
T cd07652 81 GLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKA 130 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 346666 45578999999999999999999998876665554444443
No 255
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.99 E-value=5.9 Score=39.16 Aligned_cols=15 Identities=40% Similarity=0.570 Sum_probs=13.5
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999876
No 256
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=49.96 E-value=6.3 Score=46.21 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCcceeeeccccccccccccC
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.++..++.+ ...|+..|+||||||++|..
T Consensus 153 ~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 153 AFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 344444432 34477889999999999854
No 257
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=49.80 E-value=47 Score=42.64 Aligned_cols=8 Identities=25% Similarity=0.742 Sum_probs=3.3
Q ss_pred hHHHHHHh
Q 001229 144 QEDIFQVV 151 (1119)
Q Consensus 144 QeeVY~~v 151 (1119)
|.++|...
T Consensus 655 n~dlfakL 662 (1102)
T KOG1924|consen 655 NDDLFAKL 662 (1102)
T ss_pred chHHHHHH
Confidence 34444443
No 258
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=49.46 E-value=5.7e+02 Score=31.18 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh--cccCcchhhHHHHHHHHhhhhhhhHHHHH
Q 001229 934 MVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKA--GAKGHGSRFAKSVAAELSALRVERDRERE 998 (1119)
Q Consensus 934 ~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaaka--g~~g~~~~f~~~laae~s~lr~ereke~~ 998 (1119)
..+++.+|++++.++-+.-.....-++.+++.-... ..-...+.-...|-..|..|+.+...-+.
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRL 268 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHH
Confidence 457777888777776666554555555555432210 00000111234566667777766665544
No 259
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=49.31 E-value=6.5 Score=38.63 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=13.3
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+.+|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 260
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=49.29 E-value=29 Score=41.16 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=40.5
Q ss_pred eecCCCCChHHHHHHhhHHHHHHHHcC---CCcceeeeccccccccc---------------------cccCCCCCCCCC
Q 001229 136 SVLDSNSNQEDIFQVVGLPLVKNALAG---YNVSLLSYGQTGSGKTY---------------------TMWGPPSAMVED 191 (1119)
Q Consensus 136 ~VFd~~asQeeVY~~v~~pLV~~vL~G---yN~tIfAYGQTGSGKTy---------------------TM~G~~~~~~~~ 191 (1119)
.||+ +++.-..++. -+.....| -+-.|.-.|++|+|||. |+-|.. ...
T Consensus 52 ~~~G----~~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~---~~s 123 (361)
T smart00763 52 DFFG----MEEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG---EES 123 (361)
T ss_pred hccC----cHHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC---CCC
Confidence 6777 4455555553 33444444 34557889999999994 333311 112
Q ss_pred CCCCCCCCcHHHHHHHHHH
Q 001229 192 PSPRSKEGIVPRIFQKLFS 210 (1119)
Q Consensus 192 ~s~~~~~GIIPRal~dLF~ 210 (1119)
+....--||+|...+..|.
T Consensus 124 p~~e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 124 PMHEDPLHLFPDELREDLE 142 (361)
T ss_pred CCccCCcccCCHHHHHHHH
Confidence 2233446999999999883
No 261
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.06 E-value=1.2e+02 Score=32.91 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=47.9
Q ss_pred hhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHH
Q 001229 988 ALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEM 1067 (1119)
Q Consensus 988 ~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~ 1067 (1119)
.....++..-..|++++..++..+-++-+.+..+. .-|+..+.-+..-++...++++.++|+++++++++---..|
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~----~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i 137 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK----KGREESEEREELLEELEELKKELKELKKELEKYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 33455677777888888888888888877777662 22333322222333444445555555555554444333556
Q ss_pred HHHHHHH
Q 001229 1068 ITMKQYL 1074 (1119)
Q Consensus 1068 ~t~~~~l 1074 (1119)
..|++.+
T Consensus 138 ~~~~~~~ 144 (188)
T PF03962_consen 138 EKLKEEI 144 (188)
T ss_pred HHHHHHH
Confidence 6666655
No 262
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=48.86 E-value=3.7e+02 Score=29.55 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhh
Q 001229 948 LVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVR 1027 (1119)
Q Consensus 948 l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvr 1027 (1119)
|-.|+.+|..+|++.++.-. |.-.++.+-|++...-|.|-..+..+-|+.|++
T Consensus 82 Le~R~~~I~~~L~~Ae~~k~-----------------eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~---------- 134 (204)
T PRK09174 82 IETRRDRIAQDLDQAARLKQ-----------------EADAAVAAYEQELAQARAKAHSIAQAAREAAKA---------- 134 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 44789999999988766543 444556666666666677766666666555543
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 001229 1028 LKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLA 1075 (1119)
Q Consensus 1028 l~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~la 1075 (1119)
++++....+++. +++..+++.++|++.|.+-..+|.++=.-+|
T Consensus 135 --~~e~~~~~a~~e---a~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A 177 (204)
T PRK09174 135 --KAEAERAAIEAS---LEKKLKEAEARIAAIKAKAMADVGSIAEETA 177 (204)
T ss_pred --HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333332 2234456667777777777666665544443
No 263
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=48.59 E-value=1.5e+02 Score=32.65 Aligned_cols=91 Identities=20% Similarity=0.266 Sum_probs=60.1
Q ss_pred HHHhhhhhhh-H--HHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001229 984 AELSALRVER-D--REREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLK 1060 (1119)
Q Consensus 984 ae~s~lr~er-e--ke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk 1060 (1119)
.|||-|+-.- | -|...=--|.-+|+.|||++-..+++-..-+..|+++=..-+..- ..-+.|....+.+++-|+
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~EL---E~ce~ELqr~~~Ea~lLr 86 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLEL---EVCENELQRKKNEAELLR 86 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhH---HHhHHHHHHHhCHHHHhh
Confidence 4777777521 1 122222236678888999988888888887777776544433333 245667777777777777
Q ss_pred hhh---hhHHHHHHHHHhhc
Q 001229 1061 RKH---KMEMITMKQYLAES 1077 (1119)
Q Consensus 1061 ~kh---~~e~~t~~~~laes 1077 (1119)
.|. +.|+.-|++-|+..
T Consensus 87 ekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 87 EKLGQLEAELAELREELACA 106 (202)
T ss_pred hhhhhhHHHHHHHHHHHHhh
Confidence 765 45899999988775
No 264
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=48.50 E-value=8.6e+02 Score=32.98 Aligned_cols=128 Identities=22% Similarity=0.262 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHH
Q 001229 930 GHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKI 1009 (1119)
Q Consensus 930 ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~ 1009 (1119)
-|-+++-+-++||+..-.|..--.+.++.+..|-+++++--..--+.+=.++++..+ ..+-++++...+..|++|..
T Consensus 423 ri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~---~~et~el~~~iknlnk~L~~ 499 (1195)
T KOG4643|consen 423 RINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQL---EAETEELLNQIKNLNKSLNN 499 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999999999999999988644333345555665544 34556666677777777765
Q ss_pred HhhhhHHHHhh-hhhhhhhhhh-------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001229 1010 QLRDTAEAVHA-AGELLVRLKE-------AEQAASVAEANFSGVQQENEKLKKQIDKLKR 1061 (1119)
Q Consensus 1010 qlrdtaeav~a-agellvrl~e-------aeea~~~a~~~~~~~~qe~~k~~~q~~klk~ 1061 (1119)
--.++-- .|| --+|.=.+++ --+-+..-+++....|.||+-|-+||-+||-
T Consensus 500 r~~elsr-l~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 500 RDLELSR-LHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4444421 222 1222222222 2222233345556678889999999999887
No 265
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=48.42 E-value=12 Score=42.03 Aligned_cols=40 Identities=28% Similarity=0.274 Sum_probs=23.9
Q ss_pred CChHHHHHHhhHHHHHHHHc--CCCcceeeecccccccccccc
Q 001229 142 SNQEDIFQVVGLPLVKNALA--GYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 142 asQeeVY~~v~~pLV~~vL~--GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
..|+++.+.+. .++..... +....++-||+.|+|||+...
T Consensus 7 iG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQLQ-LFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 44666665533 33333222 222347779999999998763
No 266
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=48.31 E-value=5.9e+02 Score=31.04 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHH----HH---HHHHHhHHHHHHHHHHhccc--Cc--chhhHHHHHHHHhhhhhhhHHHHHHH
Q 001229 932 ARMVEHYADLQEKYNDLVS----RH---RAIMEGVAEVKRAAAKAGAK--GH--GSRFAKSVAAELSALRVERDREREFL 1000 (1119)
Q Consensus 932 ar~~e~y~~l~e~~~~l~~----~h---r~i~~gi~~vk~aaakag~~--g~--~~~f~~~laae~s~lr~ereke~~~~ 1000 (1119)
..+..++.+|+.+..+|.. .| ..+..-|+.+++.-.+...+ |. ...-.+.+-.+|.....+-+.+.+.+
T Consensus 250 ~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 329 (498)
T TIGR03007 250 SELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASL 329 (498)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655543 34 34455666666665443221 10 01122222233333334444455556
Q ss_pred HHhhHHHHHHhhhhHHHHhh
Q 001229 1001 KKENKSLKIQLRDTAEAVHA 1020 (1119)
Q Consensus 1001 ~~en~~l~~qlrdtaeav~a 1020 (1119)
+.+-..|+.|+..-=+.+..
T Consensus 330 ~~~~~~l~~~~~~~~~~~~~ 349 (498)
T TIGR03007 330 EARVAELTARIERLESLLRT 349 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66666666665554333333
No 267
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=48.22 E-value=6.7 Score=37.41 Aligned_cols=15 Identities=40% Similarity=0.388 Sum_probs=12.9
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 577899999999865
No 268
>PRK13764 ATPase; Provisional
Probab=48.18 E-value=8.9 Score=48.15 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.7
Q ss_pred CcceeeeccccccccccccC
Q 001229 164 NVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~G 183 (1119)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 44589999999999999843
No 269
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=48.18 E-value=9.7 Score=45.18 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..|..+++|-| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34566778876 888999999999863
No 270
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.08 E-value=1.8e+02 Score=31.34 Aligned_cols=63 Identities=27% Similarity=0.376 Sum_probs=49.0
Q ss_pred hhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001229 890 DELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRH 952 (1119)
Q Consensus 890 ~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~h 952 (1119)
.+|+.++...+.....++.+|+.-.+..+-|+|.|..-=.=..-+=+....|++-+.+|+.|.
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888999999999999999999876555544555567778888888888774
No 271
>PHA00729 NTP-binding motif containing protein
Probab=47.42 E-value=11 Score=41.73 Aligned_cols=32 Identities=28% Similarity=0.252 Sum_probs=22.5
Q ss_pred hHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 152 GLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 152 ~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
++-++..+..|--..|+.+|.+|+||||....
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 34456666543334799999999999997643
No 272
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=47.41 E-value=6.6 Score=41.41 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=14.7
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45788999999999975
No 273
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=47.38 E-value=13 Score=42.30 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=25.3
Q ss_pred HHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 147 IFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 147 VY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
|+...+.||+ ..+.--+..|--||+|++|||.++
T Consensus 177 l~~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 177 LCAAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3455566666 455566678889999999999876
No 274
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=47.32 E-value=6.3 Score=51.44 Aligned_cols=139 Identities=29% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH-hcccCcchhhHHHHHHHHhhhhhhhHH---HHHHHHHhhHHHHHHhhhhHHHHhhhh
Q 001229 947 DLVSRHRAIMEGVAEVKRAAAK-AGAKGHGSRFAKSVAAELSALRVERDR---EREFLKKENKSLKIQLRDTAEAVHAAG 1022 (1119)
Q Consensus 947 ~l~~~hr~i~~gi~~vk~aaak-ag~~g~~~~f~~~laae~s~lr~erek---e~~~~~~en~~l~~qlrdtaeav~aag 1022 (1119)
.|-.++|+.=..+++.|..... +.-++.-.+=+..+.+||-.|+.+-|. ..+.|+.+|+.|+.+|.|......-+|
T Consensus 374 ~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~ 453 (859)
T PF01576_consen 374 ELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAG 453 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc
Confidence 4444555555556666555433 222333334455566666666655543 223456666666666655544444333
Q ss_pred ------------------hhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHH
Q 001229 1023 ------------------ELLVRLKEAEQAASVAEANFSGVQQENEKLKKQI-----------DKLKRKHKMEMITMKQY 1073 (1119)
Q Consensus 1023 ------------------ellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~-----------~klk~kh~~e~~t~~~~ 1073 (1119)
||=..|.|+|.++..++..-.-++-+.+-++.++ |.++|+|...|..|+.-
T Consensus 454 k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~ 533 (859)
T PF01576_consen 454 KSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAE 533 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhH
Confidence 4566778899998888887777777777776665 55799999999999998
Q ss_pred H-hhcCCCccccc
Q 001229 1074 L-AESKLPESALQ 1085 (1119)
Q Consensus 1074 l-aes~lp~~~~~ 1085 (1119)
| .|.+.-..+++
T Consensus 534 LE~E~k~r~~~~r 546 (859)
T PF01576_consen 534 LEEERKERAEALR 546 (859)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 8 56665555553
No 275
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=47.15 E-value=4.1e+02 Score=28.83 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=46.8
Q ss_pred HhhHHHHHHHHHHHHhhhhHHHH------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHH
Q 001229 914 KKVTEELDDALSRAVLGHARMVE------------HYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKS 981 (1119)
Q Consensus 914 k~c~eel~~al~~a~~ghar~~e------------~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~ 981 (1119)
+-.-+|-..||+.-|.-|-..+. .|....+.+...+..|..=.....+|=+.|++++-. .| ..
T Consensus 83 ~~~leEhq~alelIM~KyReq~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~kI~EM~~vM~~ai~~de~----~~-~~ 157 (181)
T PF05769_consen 83 RQSLEEHQSALELIMSKYREQMSQLMMASKFDDTEPYLEANEQLSKEVQSQAEKICEMAAVMRKAIELDEE----NS-QE 157 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh----hh-Hh
Confidence 45778888899988887764433 333334444444444443333455555555554321 12 12
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhhHHHHHHhh
Q 001229 982 VAAELSALRVERDREREFLKKENKSLKIQLR 1012 (1119)
Q Consensus 982 laae~s~lr~ereke~~~~~~en~~l~~qlr 1012 (1119)
....| ..|..||++||..|.
T Consensus 158 ~qe~i-----------~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 158 EQEII-----------AQLETENKGLRELLQ 177 (181)
T ss_pred HHHHH-----------HHHHHHHHHHHHHHh
Confidence 23333 446679999998874
No 276
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=47.14 E-value=1.6e+02 Score=29.16 Aligned_cols=94 Identities=23% Similarity=0.282 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhh
Q 001229 934 MVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRD 1013 (1119)
Q Consensus 934 ~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrd 1013 (1119)
+.++|-.|++....|-..+..+...|.+++.+- .+| +.|++ .
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~--------------------~~L--------~~l~~-------~--- 45 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAI--------------------ETL--------EDLKG-------A--- 45 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHH--------Hhccc-------c---
Confidence 466788888888888888888888888876652 111 11110 0
Q ss_pred hHHHHhhhhhhhhhh---------------------------hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhH
Q 001229 1014 TAEAVHAAGELLVRL---------------------------KEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKME 1066 (1119)
Q Consensus 1014 taeav~aagellvrl---------------------------~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e 1066 (1119)
...+.||-| +..++|...-++|...++...+++.+.+.++++....=
T Consensus 46 ------~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 46 ------EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred ------CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 125566655 88999999999999999999999999999999877664
Q ss_pred HHHHH
Q 001229 1067 MITMK 1071 (1119)
Q Consensus 1067 ~~t~~ 1071 (1119)
+..|.
T Consensus 120 ~~~l~ 124 (126)
T TIGR00293 120 EQEAQ 124 (126)
T ss_pred HHHHh
Confidence 44443
No 277
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=47.05 E-value=1.4e+02 Score=31.84 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 001229 1044 GVQQENEKLKKQIDKLKRKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1044 ~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1076 (1119)
.+..+..+...+|..+..|.+.||..|+--++.
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666554
No 278
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=46.77 E-value=3.4e+02 Score=27.88 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhh
Q 001229 948 LVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVR 1027 (1119)
Q Consensus 948 l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvr 1027 (1119)
|-.|...|.+++++.+++- .|+..++.+.|.....-|.|-..+....++.|.+
T Consensus 36 l~~R~~~I~~~l~~A~~~~-----------------~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~---------- 88 (141)
T PRK08476 36 MDNRNASIKNDLEKVKTNS-----------------SDVSEIEHEIETILKNAREEANKIRQKAIAKAKE---------- 88 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3467888888988877653 4455566666666666666655554444444432
Q ss_pred hhhHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1028 LKEAEQAASVAEANFSGVQ-QENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1028 l~eaeea~~~a~~~~~~~~-qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
||++....|++.+.... +-...+..+..++...-+.+|..+.-.+
T Consensus 89 --ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~~~ 134 (141)
T PRK08476 89 --EAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEAL 134 (141)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444445544443322 2233455566666666666666665444
No 279
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.53 E-value=1.2e+02 Score=33.47 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 001229 1032 EQAASVAEANFSGVQQENEKLKKQIDKLKRKHK 1064 (1119)
Q Consensus 1032 eea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~ 1064 (1119)
.+-+..++.....++++|++|++|+++++.+-+
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455566678888888888888777653
No 280
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=46.46 E-value=13 Score=44.49 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=24.1
Q ss_pred HHHHHHhhHHHHHHHHcC----CCcceeeeccccccccccc
Q 001229 145 EDIFQVVGLPLVKNALAG----YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 145 eeVY~~v~~pLV~~vL~G----yN~tIfAYGQTGSGKTyTM 181 (1119)
...|.....-++.++..- -.+-|.-.||||.|||+|+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 344555444444444443 1556777899999999998
No 281
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.46 E-value=10 Score=45.12 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=19.9
Q ss_pred HHHHHHcCCCcceeeecccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
+...+-.+.-..++-||++|+|||++..
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 3333345555577779999999998763
No 282
>PLN03025 replication factor C subunit; Provisional
Probab=46.29 E-value=12 Score=42.92 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=16.6
Q ss_pred CCCcceeeeccccccccccccC
Q 001229 162 GYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 162 GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
|.-..++-||+.|+|||++...
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 3333466799999999998854
No 283
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.10 E-value=3e+02 Score=34.83 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=18.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhcC
Q 001229 1054 KQIDKLKRKHKMEMITMKQYLAESK 1078 (1119)
Q Consensus 1054 ~q~~klk~kh~~e~~t~~~~laes~ 1078 (1119)
-++-.|+|||...+..+-+|+.+..
T Consensus 307 ~~L~~l~RKY~~~~~~l~~~~~~~~ 331 (557)
T COG0497 307 FALKSLARKYGVTIEDLLEYLDKIK 331 (557)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3556788888888888888886543
No 284
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.07 E-value=4.9e+02 Score=32.92 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhh
Q 001229 991 VERDREREFLKKENKSLKIQLRD 1013 (1119)
Q Consensus 991 ~ereke~~~~~~en~~l~~qlrd 1013 (1119)
+++|-|++.|+.+|.+|+.|++-
T Consensus 304 e~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 304 EEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999864
No 285
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=45.71 E-value=8.1e+02 Score=31.87 Aligned_cols=123 Identities=24% Similarity=0.362 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccC-c------------------chhhHHHHHHHHhhhhh
Q 001229 931 HARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKG-H------------------GSRFAKSVAAELSALRV 991 (1119)
Q Consensus 931 har~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g-~------------------~~~f~~~laae~s~lr~ 991 (1119)
--||+-|-..|+|.-.+| +.-+..||..+++.|--= + --+=++.|--.+..||.
T Consensus 529 ee~~~kqie~Lee~~~~L-------rneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrK 601 (786)
T PF05483_consen 529 EEKMLKQIENLEETNTQL-------RNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRK 601 (786)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 357888888888887765 234456666666655210 0 01234455566666666
Q ss_pred ---hhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Q 001229 992 ---ERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMI 1068 (1119)
Q Consensus 992 ---ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~ 1068 (1119)
...|=-+-|..||+.|+-|. |||- ++....+=...+|..+++++|++|+-+..
T Consensus 602 qvEnk~K~ieeLqqeNk~LKKk~--~aE~----------------------kq~~~~eikVn~L~~E~e~~kk~~eE~~~ 657 (786)
T PF05483_consen 602 QVENKNKNIEELQQENKALKKKI--TAES----------------------KQSNVYEIKVNKLQEELENLKKKHEEETD 657 (786)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH--HHHH----------------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444445777888887775 3332 23344455667888888888888888888
Q ss_pred HHHHHHhhcCCCcccc
Q 001229 1069 TMKQYLAESKLPESAL 1084 (1119)
Q Consensus 1069 t~~~~laes~lp~~~~ 1084 (1119)
.+..-|..-+.-++-|
T Consensus 658 ~~~keie~K~~~e~~L 673 (786)
T PF05483_consen 658 KYQKEIESKSISEEEL 673 (786)
T ss_pred HHHHHHHHhhhhHHHH
Confidence 8777776544444433
No 286
>PHA03162 hypothetical protein; Provisional
Probab=45.67 E-value=61 Score=33.38 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=22.0
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhh
Q 001229 978 FAKSVAAELSALRVERDREREFLKKENKSLKIQLRDT 1014 (1119)
Q Consensus 978 f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdt 1014 (1119)
=..-|||||.-|+. |||.|+.|||-.
T Consensus 14 tmEeLaaeL~kLqm-----------ENK~LKkkl~~~ 39 (135)
T PHA03162 14 TMEDLAAEIAKLQL-----------ENKALKKKIKEG 39 (135)
T ss_pred CHHHHHHHHHHHHH-----------HHHHHHHHHHhc
Confidence 45679999988888 999999999764
No 287
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=45.10 E-value=12 Score=44.38 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=19.4
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.| |++-++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 4456788987 667789999999864
No 288
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=44.96 E-value=97 Score=28.02 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=16.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHh
Q 001229 1038 AEANFSGVQQENEKLKKQIDKLKR 1061 (1119)
Q Consensus 1038 a~~~~~~~~qe~~k~~~q~~klk~ 1061 (1119)
|++|...++++.+.|+++|+.|+.
T Consensus 37 aE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 37 AEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777777777777777777653
No 289
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=44.79 E-value=8.3 Score=45.84 Aligned_cols=15 Identities=47% Similarity=0.970 Sum_probs=13.7
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+-||.+||||||++
T Consensus 33 ~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLV 47 (438)
T ss_pred EEEeccCCCchhHHH
Confidence 588999999999986
No 290
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=44.67 E-value=8.9e+02 Score=32.05 Aligned_cols=93 Identities=16% Similarity=0.222 Sum_probs=52.7
Q ss_pred HHHHhhhhhh-cccceehhhhhhhhHHHhhHHHHHHHHHHhH-HHhhHH---HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001229 872 EKERERWTEM-ESEWICLTDELRVDIESSRRHAERVESELRL-EKKVTE---ELDDALSRAVLGHARMVEHYADLQEKYN 946 (1119)
Q Consensus 872 ~~er~~w~e~-es~wi~lt~elr~~le~~r~~~ek~~~el~~-ek~c~e---el~~al~~a~~ghar~~e~y~~l~e~~~ 946 (1119)
..|+.||.+. +-.|...--+..-+|+.++.-.+.+++++.. +++-+| .|.++=.-|--=-+-++-++.+|.--+|
T Consensus 442 ~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I 521 (775)
T PF10174_consen 442 LREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEI 521 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHH
Confidence 4577777765 4445555556677777777777777776653 221111 2333322233233456777888877777
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 001229 947 DLVSRHRAIMEGVAEVKR 964 (1119)
Q Consensus 947 ~l~~~hr~i~~gi~~vk~ 964 (1119)
.|=.+-..+-....+|+|
T Consensus 522 ~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 522 ELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 775544444455555655
No 291
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=44.50 E-value=2e+02 Score=31.59 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=44.9
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHhhh-------hhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001229 996 EREFLKKENKSLKIQLRDTAEAVHAA-------GELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKR 1061 (1119)
Q Consensus 996 e~~~~~~en~~l~~qlrdtaeav~aa-------gellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~ 1061 (1119)
.-..|..|+-.|+.|+|+|=-|||-| ++|=.=+++-||--.-...++-.+|-|+..|-.+|+.|.-
T Consensus 37 ~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqe 109 (193)
T PF14662_consen 37 GNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQE 109 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777999999999988 3344444555555555556666777777777777777754
No 292
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=44.38 E-value=12 Score=50.33 Aligned_cols=34 Identities=29% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 149 QVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 149 ~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
...+..+++.+-.|....++. .+||||||+||++
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
No 293
>PRK10536 hypothetical protein; Provisional
Probab=44.35 E-value=11 Score=42.80 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=28.3
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeecccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 3666666666666655433 2233 3489999999999999764
No 294
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=44.18 E-value=13 Score=46.05 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=20.8
Q ss_pred HHHHHHHcCCC--cceeeeccccccccccc
Q 001229 154 PLVKNALAGYN--VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN--~tIfAYGQTGSGKTyTM 181 (1119)
..++..+.|.. .-++-+|++|+|||.|+
T Consensus 33 ~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 33 SWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 44555555543 45788999999999998
No 295
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.16 E-value=2.6e+02 Score=31.40 Aligned_cols=91 Identities=13% Similarity=0.198 Sum_probs=67.6
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHH------
Q 001229 977 RFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENE------ 1050 (1119)
Q Consensus 977 ~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~------ 1050 (1119)
.|.+-++.+|+.+..+.+++|+..++.+.-|+..|.-+-.-|+.|= -.-..+...+..|++.+..||....
T Consensus 92 ~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~k---K~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~ 168 (241)
T cd07656 92 IYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAM---KTYHTYHAESKSAERKLKEAEKQEEKQEQSP 168 (241)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4777788899999999999999999999999999998887777653 2333344444556666666666644
Q ss_pred -----------HHHHHHHHHHhhhhhHHHHH
Q 001229 1051 -----------KLKKQIDKLKRKHKMEMITM 1070 (1119)
Q Consensus 1051 -----------k~~~q~~klk~kh~~e~~t~ 1070 (1119)
|+.+.+||.|.+|..-..-|
T Consensus 169 ~~~~~~~~~~~~~~~~~eK~k~k~~~~~~k~ 199 (241)
T cd07656 169 EKKLERSRSSKKIEKEVEKRQAKYSEAKLKC 199 (241)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888877655444
No 296
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.90 E-value=40 Score=36.09 Aligned_cols=64 Identities=30% Similarity=0.444 Sum_probs=43.4
Q ss_pred HHHhhhhHHHHhhhhhhhhhhhhHH-----------HHHHHHHHhhhh--------------hHHHHHHHHHHHHHHHhh
Q 001229 1008 KIQLRDTAEAVHAAGELLVRLKEAE-----------QAASVAEANFSG--------------VQQENEKLKKQIDKLKRK 1062 (1119)
Q Consensus 1008 ~~qlrdtaeav~aagellvrl~eae-----------ea~~~a~~~~~~--------------~~qe~~k~~~q~~klk~k 1062 (1119)
+.|++-+|+|+|--||=||-|.-+- +|+..|++=-+. --++-|-...-+|||+.+
T Consensus 29 KSqiKRd~~aLq~LGe~L~~L~~~~L~KiPL~E~L~~Ai~~aqri~~~~arrRQlQyIGKlmR~~DvepI~~~Ldkl~~~ 108 (187)
T COG3028 29 KSQIKRDAEALQDLGEELVDLTKAALAKIPLDEDLLEAIELAQRIKSEIARRRQLQYIGKLMRDRDVEPIRAALDKLRNR 108 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhhh
Confidence 6799999999999999999876553 334444332221 012334445557899999
Q ss_pred hhhHHHHHH
Q 001229 1063 HKMEMITMK 1071 (1119)
Q Consensus 1063 h~~e~~t~~ 1071 (1119)
|..+..++-
T Consensus 109 ~~q~~a~lH 117 (187)
T COG3028 109 HNQQVALLH 117 (187)
T ss_pred HHHHHHHHH
Confidence 999987764
No 297
>PRK06547 hypothetical protein; Provisional
Probab=43.74 E-value=14 Score=38.96 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=18.2
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.++..+..+.---|.-+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3444444444444566699999999864
No 298
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.47 E-value=62 Score=33.92 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 001229 444 DDVNDLSDQIRQLKEELIRAKS 465 (1119)
Q Consensus 444 ~~v~~L~~~I~~Lk~EL~rlk~ 465 (1119)
+++..+..+|.+|++++..++.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~ 93 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKK 93 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666655543
No 299
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.12 E-value=9.3 Score=45.36 Aligned_cols=20 Identities=35% Similarity=0.280 Sum_probs=16.7
Q ss_pred CcceeeeccccccccccccC
Q 001229 164 NVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~G 183 (1119)
...++-+|+||+|||+|+..
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45778899999999999843
No 300
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=43.06 E-value=1.8e+02 Score=32.64 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=38.3
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhh
Q 001229 978 FAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAA 1021 (1119)
Q Consensus 978 f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aa 1021 (1119)
|..-++.+|+.|..+.+++|+....++..|+.+|.-+-..|+-+
T Consensus 88 l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~ 131 (237)
T cd07657 88 LESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKL 131 (237)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667889999999999999999999999999998887776654
No 301
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=43.01 E-value=14 Score=46.86 Aligned_cols=35 Identities=34% Similarity=0.372 Sum_probs=25.1
Q ss_pred HHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 147 IFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 147 VY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
||...-.-.-.-...|.|-||+-.|.+|||||+|+
T Consensus 68 if~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 68 IFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred cchhhhcccccccccccccceeeccccccccccch
Confidence 55444333322234789999999999999999986
No 302
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.75 E-value=1.4e+02 Score=36.80 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhhhhhhH---HHHHHHHHhhHHHHHHhhhhHHHHhhh
Q 001229 978 FAKSVAAELSALRVERD---REREFLKKENKSLKIQLRDTAEAVHAA 1021 (1119)
Q Consensus 978 f~~~laae~s~lr~ere---ke~~~~~~en~~l~~qlrdtaeav~aa 1021 (1119)
=+..|.|++..+|.+-+ ++-+.|++||+.||.+..+.-.-|+-|
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 46677888888887654 366779999999999888887766654
No 303
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=42.18 E-value=5.1e+02 Score=28.52 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001229 931 HARMVEHYADLQEKYNDLVSRHRAIMEG 958 (1119)
Q Consensus 931 har~~e~y~~l~e~~~~l~~~hr~i~~g 958 (1119)
-.+|=.+|.++.-|-+.|.+|++...-.
T Consensus 122 l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 122 IAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666654443
No 304
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.01 E-value=3.2e+02 Score=27.69 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 001229 1030 EAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1030 eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1076 (1119)
..++|...=++|...++...+++.+++.++++.++.=...|++.-++
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999999999999888777777665543
No 305
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=41.90 E-value=15 Score=44.18 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..|..+++|.| |++-++||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34556678887 788899999999874
No 306
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=41.74 E-value=9.8 Score=40.49 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=13.8
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
-..||..||.|||||+.+
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 356888999999999876
No 307
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=41.69 E-value=16 Score=46.38 Aligned_cols=31 Identities=29% Similarity=0.201 Sum_probs=20.7
Q ss_pred hHHHHHHHHc-----CCCcceeeeccccccccccccC
Q 001229 152 GLPLVKNALA-----GYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 152 ~~pLV~~vL~-----GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
+..+++.+.. |.+..|+. -.||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHHH
Confidence 3345666665 34455544 4899999999965
No 308
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=41.65 E-value=18 Score=40.54 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=16.6
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445788999999999876
No 309
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=40.97 E-value=11 Score=41.75 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.1
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
..|+-||++|+|||++..
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 457789999999999863
No 310
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=40.54 E-value=21 Score=44.25 Aligned_cols=44 Identities=23% Similarity=0.529 Sum_probs=30.8
Q ss_pred CeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeecccccccc
Q 001229 129 ERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKT 178 (1119)
Q Consensus 129 ~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKT 178 (1119)
...|+||.+.+....=.++- .+ -.-..+.+++|+-+|.||+||-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~-----~~-akr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVL-----EL-AKRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred ccccchhhhccCCHHHHHHH-----HH-HHhhcCCCCcEEEecCCCccHH
Confidence 35699999987554322111 11 1335899999999999999997
No 311
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=40.29 E-value=10 Score=46.22 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=27.7
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHH-HHHc--C--CCcceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVK-NALA--G--YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~--G--yN~tIfAYGQTGSGKTyTM 181 (1119)
..+||.|.+.+.....+.+ ++..+-. ..+. | ..-.|+-||++|+|||+..
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 4677877765444333332 2211110 0111 2 2335888999999999986
No 312
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.82 E-value=61 Score=37.21 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHHhhhcccCCCCCcCcccccccccccc
Q 001229 508 DEHDVSELRQQLAKLQSSYDKSSKDPSENKDSVLCSSVEEF 548 (1119)
Q Consensus 508 ~e~~i~eL~~Qi~~l~~~~e~~~~~~~~~~~~~~~~~~~~~ 548 (1119)
...+|+.|++-|+.+.+.+-+.+| .+|-||.+.|
T Consensus 122 ARkEIkQLkQvieTmrssL~ekDk-------GiQKYFvDIN 155 (305)
T PF15290_consen 122 ARKEIKQLKQVIETMRSSLAEKDK-------GIQKYFVDIN 155 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhh-------hHHHHHhhhh
Confidence 357888888888888888766544 5566665554
No 313
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=39.68 E-value=21 Score=41.07 Aligned_cols=18 Identities=39% Similarity=0.449 Sum_probs=15.3
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 467889999999999874
No 314
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=39.63 E-value=5.1e+02 Score=28.50 Aligned_cols=50 Identities=26% Similarity=0.354 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCc
Q 001229 918 EELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGH 974 (1119)
Q Consensus 918 eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~ 974 (1119)
.|+.++|..|-..-|+.+=...-|+-+|.++-. -|.+....|-.|=.+|-
T Consensus 34 rem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~-------~~~~~~~~A~~Al~~G~ 83 (219)
T TIGR02977 34 QEMEDTLVEVRTTSARTIADKKELERRVSRLEA-------QVADWQEKAELALSKGR 83 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCC
Confidence 344444444444444444443334433333322 23344444444444554
No 315
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.50 E-value=41 Score=38.33 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=49.0
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHH---cCCC--cceeeeccccccccccccCCCC----CCC---CCCCCCCCCC
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNAL---AGYN--VSLLSYGQTGSGKTYTMWGPPS----AMV---EDPSPRSKEG 199 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL---~GyN--~tIfAYGQTGSGKTyTM~G~~~----~~~---~~~s~~~~~G 199 (1119)
.+|..|=+-+..-++|-+.+-.|+...-+ -|++ -.|+.||+.|+|||...-.-.. ... +...-+.-.|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 34445555555556777777777766544 2444 4589999999999854321110 000 0000112235
Q ss_pred cHHHHHHHHHHHHHHh
Q 001229 200 IVPRIFQKLFSEIQRE 215 (1119)
Q Consensus 200 IIPRal~dLF~~I~~~ 215 (1119)
==||.++++|+...++
T Consensus 232 egprmvrdvfrlaken 247 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKEN 247 (408)
T ss_pred cCcHHHHHHHHHHhcc
Confidence 5699999999887653
No 316
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=39.49 E-value=5.5e+02 Score=28.14 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=23.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001229 923 ALSRAVLGHARMVEHYADLQEKYNDLVSRHR 953 (1119)
Q Consensus 923 al~~a~~ghar~~e~y~~l~e~~~~l~~~hr 953 (1119)
+|+.-=.=|..-|..|-+-+...-+|+.+|.
T Consensus 37 ~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~ 67 (194)
T PF15619_consen 37 TLKQLQKRQEKALQKYEDTEAELPQLLQRHN 67 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5555555577777888888888888888886
No 317
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=39.30 E-value=12 Score=42.80 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=15.0
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 356888999999999864
No 318
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.24 E-value=94 Score=33.23 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1043 SGVQQENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1043 ~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
....+|.+++++++++ .+.|+.+||...
T Consensus 157 ~~~~~ei~~lk~el~~----~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEK----KEKEIEALKKQS 184 (192)
T ss_pred hhhHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3444555555555554 667788887654
No 319
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.99 E-value=6.3e+02 Score=33.30 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 001229 1044 GVQQENEKLKKQIDKLKRK 1062 (1119)
Q Consensus 1044 ~~~qe~~k~~~q~~klk~k 1062 (1119)
...++..++.++++++++.
T Consensus 604 ~~~~~~~~~~~~l~~~~~~ 622 (782)
T PRK00409 604 VKAHELIEARKRLNKANEK 622 (782)
T ss_pred hhHHHHHHHHHHHHHhhhh
Confidence 3455566666666666543
No 320
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=38.80 E-value=97 Score=36.98 Aligned_cols=24 Identities=33% Similarity=0.738 Sum_probs=20.7
Q ss_pred cCCCcceeeeccccccccc---cccCC
Q 001229 161 AGYNVSLLSYGQTGSGKTY---TMWGP 184 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTy---TM~G~ 184 (1119)
.|+.-+|+..|+.|+|||. ||+|.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh
Confidence 6999999999999999996 45554
No 321
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=38.42 E-value=19 Score=42.39 Aligned_cols=28 Identities=39% Similarity=0.654 Sum_probs=20.9
Q ss_pred HHHHHHHcCCC---cceeeecccccccccccc
Q 001229 154 PLVKNALAGYN---VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 154 pLV~~vL~GyN---~tIfAYGQTGSGKTyTM~ 182 (1119)
|+++..+.|.- -|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 66777787763 45665 999999998663
No 322
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.13 E-value=17 Score=43.98 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..|..++.|.+ +++..+||||||.+.
T Consensus 18 ~ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 45666788986 566789999999764
No 323
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=37.97 E-value=18 Score=45.75 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=19.9
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4556678876 788899999999874
No 324
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.78 E-value=13 Score=45.30 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=18.1
Q ss_pred HcCCCcceeeeccccccccccccCC
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTMWGP 184 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM~G~ 184 (1119)
..|.+ ++|++|||||||+...++
T Consensus 109 ~~Grd--l~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAFLIP 131 (482)
T ss_pred ecCCc--eEEEccCCCcchHHHHHH
Confidence 34554 599999999999988764
No 325
>PF05729 NACHT: NACHT domain
Probab=37.69 E-value=13 Score=36.96 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.5
Q ss_pred ceeeecccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~ 182 (1119)
.|+-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 36789999999999873
No 326
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=37.48 E-value=21 Score=45.34 Aligned_cols=93 Identities=20% Similarity=0.285 Sum_probs=54.8
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcH----HHHHHH
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIV----PRIFQK 207 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GII----PRal~d 207 (1119)
|....=|.|.-.|..-|..+ ++.+-.|... ...+|.|||||||||-.--... ..+-|| -....+
T Consensus 2 f~~~~~~~~~~~Q~~ai~~l----~~~~~~~~~~-~~l~Gvtgs~kt~~~a~~~~~~-------~~p~Lvi~~n~~~A~q 69 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAKL----VEGLTDGEKH-QTLLGVTGSGKTFTMANVIAQV-------NRPTLVIAHNKTLAAQ 69 (655)
T ss_pred ceeccCCCCChHHHHHHHHH----HHhhhcCCCc-EEEECCCCcHHHHHHHHHHHHh-------CCCEEEEECCHHHHHH
Confidence 45556688888888777654 4555556423 2378999999999996522100 111111 124455
Q ss_pred HHHHHHHhhhccCCCceeEEEEEEEEeeeccccc
Q 001229 208 LFSEIQREQENSDGKQINYQCRCSFLEIYNEQIG 241 (1119)
Q Consensus 208 LF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~ 241 (1119)
|+..+...-. . -.+...|||+..|.-..|
T Consensus 70 l~~el~~f~p---~--~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 70 LYNEFKEFFP---E--NAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HHHHHHHhCC---C--CeEEEEeeecccCCcccc
Confidence 6666544321 1 125667899999966543
No 327
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=37.45 E-value=12 Score=36.62 Aligned_cols=16 Identities=50% Similarity=0.756 Sum_probs=13.4
Q ss_pred eeeecccccccccccc
Q 001229 167 LLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM~ 182 (1119)
++-||++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4679999999999763
No 328
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=37.36 E-value=1e+03 Score=30.65 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=18.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001229 923 ALSRAVLGHARMVEHYADLQEKYNDLV 949 (1119)
Q Consensus 923 al~~a~~ghar~~e~y~~l~e~~~~l~ 949 (1119)
++.||+.=---+-+|-++||+.|..|-
T Consensus 154 t~SRAlsQN~eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 154 TASRALSQNRELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456676666666777788888776664
No 329
>PRK04195 replication factor C large subunit; Provisional
Probab=37.31 E-value=14 Score=44.82 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=20.7
Q ss_pred HHHHHHHcCC-Ccceeeeccccccccccc
Q 001229 154 PLVKNALAGY-NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~Gy-N~tIfAYGQTGSGKTyTM 181 (1119)
.++.....|. ...++-||++|+|||++.
T Consensus 28 ~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 28 EWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4445545554 456889999999999876
No 330
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=37.28 E-value=33 Score=38.44 Aligned_cols=41 Identities=32% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCCCChHHHHHHhhHHHHHHHHc-C-CCcceeeecccccccccc
Q 001229 139 DSNSNQEDIFQVVGLPLVKNALA-G-YNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 139 d~~asQeeVY~~v~~pLV~~vL~-G-yN~tIfAYGQTGSGKTyT 180 (1119)
++...|+.|-.. ...+++.+.. | .=..++-||+.|.|||..
T Consensus 24 ~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 24 DEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 345568888765 3466776653 2 234578899999999864
No 331
>PF09057 Smac_DIABLO: Second Mitochondria-derived Activator of Caspases; InterPro: IPR015142 This entry represents Smac (Second Mitochondria-derived Activator of Caspases) and DIABLO (Direct IAP-Binding protein with Low PI) proteins and their homologues. Smac promotes apoptosis by activating caspases in the cytochrome c/Apaf-1/caspase-9 pathway, and by opposing the inhibitory activity of inhibitor of apoptosis proteins (XIAP-BIR3). The protein assumes an elongated three-helix bundle structure, and forms a dimer in solution []. ; GO: 0006917 induction of apoptosis, 0006919 activation of caspase activity, 0005739 mitochondrion; PDB: 1XB0_I 1G73_B 3UIH_P 1XB1_H 3UIJ_Q 3D9U_B 1FEW_A 1TW6_D 1G3F_B.
Probab=36.95 E-value=6.6e+02 Score=28.36 Aligned_cols=120 Identities=24% Similarity=0.242 Sum_probs=72.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHH
Q 001229 923 ALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKK 1002 (1119)
Q Consensus 923 al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~ 1002 (1119)
||=-|+...++.|.--.-|+++|..++.| -+ +.==.++--.|-.-|+| ..-.++
T Consensus 87 ALIda~teY~kav~tLisL~k~Y~~~lgK--------------------l~--~~EeD~vWqvIIg~R~E----~~dk~~ 140 (234)
T PF09057_consen 87 ALIDAITEYTKAVHTLISLQKRYLSSLGK--------------------LN--SAEEDAVWQVIIGQRVE----MNDKQQ 140 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTT--------------------SS--THHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------------------cC--ccchhHHHHHHHHHHHH----HHHHHH
Confidence 45555666666666666677777666654 11 01112344444445553 333344
Q ss_pred hhHHHHHHh-------hhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh----hhHHHHHH
Q 001229 1003 ENKSLKIQL-------RDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKH----KMEMITMK 1071 (1119)
Q Consensus 1003 en~~l~~ql-------rdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh----~~e~~t~~ 1071 (1119)
|-+.|..-. .=.|||-.-.| ||+|...++.|...|+-..+.+.|..-+..+|. -+||.-|.
T Consensus 141 e~~rlEs~w~sAv~L~e~AAEAAy~sG--------AdqASitar~~iQ~aqsQV~e~r~ls~~AE~kLae~q~eei~r~~ 212 (234)
T PF09057_consen 141 ECLRLESTWMSAVNLSEMAAEAAYQSG--------ADQASITARTRIQVAQSQVEEARQLSQKAEKKLAEAQVEEIQRMA 212 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554422 33567776666 999999999999999988888887776665554 57888888
Q ss_pred HHHhh
Q 001229 1072 QYLAE 1076 (1119)
Q Consensus 1072 ~~lae 1076 (1119)
+|-++
T Consensus 213 ~~~~~ 217 (234)
T PF09057_consen 213 EYASS 217 (234)
T ss_dssp H---H
T ss_pred Hhhcc
Confidence 86543
No 332
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=36.84 E-value=17 Score=44.19 Aligned_cols=27 Identities=4% Similarity=0.174 Sum_probs=19.3
Q ss_pred CCCCceEeEeeecCCCCCcHHHHHHHHHHHH
Q 001229 397 LGGNAKLTVVCNISPDNKDVGEILSTIRFGQ 427 (1119)
Q Consensus 397 LGGNSkT~mIa~ISPs~~~~eETLsTLrFAs 427 (1119)
|.-..++.+|||++.... ++..|.+|-
T Consensus 320 f~iP~Nl~IIgTMNt~Dr----s~~~lD~Al 346 (459)
T PRK11331 320 FYVPENVYIIGLMNTADR----SLAVVDYAL 346 (459)
T ss_pred ccCCCCeEEEEecCcccc----chhhccHHH
Confidence 455788999999988764 344566664
No 333
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=36.69 E-value=1.6e+02 Score=33.22 Aligned_cols=54 Identities=24% Similarity=0.368 Sum_probs=35.3
Q ss_pred HHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001229 1000 LKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQI 1056 (1119)
Q Consensus 1000 ~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~ 1056 (1119)
+.++++..+..|++.= ..|=+|--.++.|++++..-+.....+++++++|..+.
T Consensus 17 ~eee~~~a~~~L~e~e---~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~ 70 (246)
T PF00769_consen 17 MEEEMRRAQEALEESE---ETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEA 70 (246)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554322 23446777888888888888888888888888777643
No 334
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=36.68 E-value=17 Score=41.25 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=18.8
Q ss_pred HHHHHHcCCCcceeeecccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
+++..+.. +--|+-+|++|+|||-++.
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 33444433 4467889999999998774
No 335
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=36.62 E-value=15 Score=42.84 Aligned_cols=88 Identities=25% Similarity=0.366 Sum_probs=55.6
Q ss_pred cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHH-c--CCC--cceeeeccccccccccc------cC-CCCCCCCCCCCC
Q 001229 128 GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNAL-A--GYN--VSLLSYGQTGSGKTYTM------WG-PPSAMVEDPSPR 195 (1119)
Q Consensus 128 ~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL-~--GyN--~tIfAYGQTGSGKTyTM------~G-~~~~~~~~~s~~ 195 (1119)
+.+.|+||+|-+-.---.++-+.+..||+...+ . |.. --+.-||+.|+|||+-- +| .+--++......
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 356789999977554445666677778887655 2 443 23678999999999742 12 111111111223
Q ss_pred CCCCcHHHHHHHHHHHHHHh
Q 001229 196 SKEGIVPRIFQKLFSEIQRE 215 (1119)
Q Consensus 196 ~~~GIIPRal~dLF~~I~~~ 215 (1119)
..-|=--|.+++.|......
T Consensus 205 kyiGEsaRlIRemf~yA~~~ 224 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREV 224 (388)
T ss_pred hhcccHHHHHHHHHHHHhhh
Confidence 44566779999999887653
No 336
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=36.61 E-value=21 Score=46.00 Aligned_cols=23 Identities=39% Similarity=0.354 Sum_probs=18.2
Q ss_pred cCCCcceeeeccccccccccccC
Q 001229 161 AGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.|.-..++-||++|+|||++...
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 45555788899999999998743
No 337
>PF06631 DUF1154: Protein of unknown function (DUF1154); InterPro: IPR009535 This entry represents group a 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta conserved site.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0006629 lipid metabolic process
Probab=36.56 E-value=33 Score=29.47 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHH
Q 001229 1050 EKLKKQIDKLKRKHKMEMITMK 1071 (1119)
Q Consensus 1050 ~k~~~q~~klk~kh~~e~~t~~ 1071 (1119)
-|-.|+++.|++||..|..+|+
T Consensus 25 KKq~KEl~~lkKKh~Ke~~~mQ 46 (47)
T PF06631_consen 25 KKQQKELEELKKKHQKERSSMQ 46 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4556889999999999999985
No 338
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=36.54 E-value=2.4e+02 Score=35.30 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH--hcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhh
Q 001229 944 KYNDLVSRHRAIMEGVAEVKRAAAK--AGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAA 1021 (1119)
Q Consensus 944 ~~~~l~~~hr~i~~gi~~vk~aaak--ag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aa 1021 (1119)
-|.|+..-|.+|+..|-|++.---- +|.+| ..|-|++--||.|+|++...-+-+.--+..++.|
T Consensus 424 ~~~d~~~~~~km~~~i~~~~~~~~sd~~~~re------r~l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~-------- 489 (588)
T KOG3612|consen 424 VHADPTVVEDKMKDAIIDLQESTLSDYSGSRE------RSLVAATEKLRQEFEELQQTSRRELPVPLRNFEL-------- 489 (588)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhcCCc------cchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchH--------
Confidence 3567777788899999998876543 33333 3577778788887777655544443323333333
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001229 1022 GELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMK 1071 (1119)
Q Consensus 1022 gellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~ 1071 (1119)
.+|+.|...-+.-.+.++..+.||--+|..++..-|
T Consensus 490 --------------em~~~r~tlE~k~~~n~~e~~kkl~~~~qr~l~etK 525 (588)
T KOG3612|consen 490 --------------EMAEMRKTLEQKHAENIKEEIKKLAEEHQRALAETK 525 (588)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444444455566666666666666665544
No 339
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=36.51 E-value=7.1e+02 Score=28.59 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=31.6
Q ss_pred HHHHHHhHHHhhHHHHHH-------HHHHHHh----hhhHHHHHHHHHHHHHHHH
Q 001229 905 RVESELRLEKKVTEELDD-------ALSRAVL----GHARMVEHYADLQEKYNDL 948 (1119)
Q Consensus 905 k~~~el~~ek~c~eel~~-------al~~a~~----ghar~~e~y~~l~e~~~~l 948 (1119)
..+-+..++++|.+-|.. .|..+.+ ||-.+++....+...|..-
T Consensus 113 ~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~~~~~Y~~~ 167 (297)
T PF02841_consen 113 CKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDELEKEYEQE 167 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 346677788999987666 3333332 8888888888888888665
No 340
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=36.51 E-value=5.3e+02 Score=27.13 Aligned_cols=53 Identities=28% Similarity=0.324 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 001229 948 LVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA 1017 (1119)
Q Consensus 948 l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea 1017 (1119)
|-.||..|.++|++.++.. .|.-++..+-++|++-.|.+-..+..+-++.|+.
T Consensus 35 l~~R~~~I~~~l~~A~~~~-----------------~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~ 87 (161)
T COG0711 35 LDERQAKIADDLAEAERLK-----------------EEAQALLAEYEQELEEAREQASEIIEQAKKEAEQ 87 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5589999999999976654 4455566677777777777777777777666654
No 341
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=36.49 E-value=1.1e+03 Score=30.79 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=47.3
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 001229 995 REREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHK 1064 (1119)
Q Consensus 995 ke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~ 1064 (1119)
+|-.....|-..|+.||+-|-++..|=--|+-+||--=--..-.+.....-+.|-+.|..-|.+|++.-+
T Consensus 190 ~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~ 259 (739)
T PF07111_consen 190 KELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRD 259 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455588899999999999999887788888753211111233344567788888888888886544
No 342
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=36.42 E-value=5.6e+02 Score=27.32 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 001229 948 LVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA 1017 (1119)
Q Consensus 948 l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea 1017 (1119)
|-.|+..|..+|++..++-..| ..+..+-+++....+.|-+.+..+-+..|+.
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA-----------------~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~ 108 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEA-----------------QTLLASYERKQREVQEQADRIVAAAKDEAQA 108 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578889999998876554433 3345555555555666666555555555444
No 343
>PHA02244 ATPase-like protein
Probab=36.24 E-value=26 Score=41.88 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=20.6
Q ss_pred HHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 147 IFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 147 VY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+......+...+-.|.+ |+-+|+||+|||+..
T Consensus 104 ~~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 104 TFHYETADIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 333333344444445655 556899999999865
No 344
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=36.09 E-value=19 Score=44.89 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=19.9
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|..+++|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 4456789988 677899999999764
No 345
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=36.00 E-value=32 Score=35.23 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=17.3
Q ss_pred HHHHHHHcCCC---ccee-eeccccccccccc
Q 001229 154 PLVKNALAGYN---VSLL-SYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN---~tIf-AYGQTGSGKTyTM 181 (1119)
..|.+.+...| ..|+ -.|.||+||||+-
T Consensus 39 ~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 39 NAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred HHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH
Confidence 44444444322 3344 4699999999973
No 346
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=35.99 E-value=25 Score=40.75 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=15.0
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
..|.-.|++|+|||+|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456677999999999984
No 347
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.81 E-value=23 Score=41.47 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=25.1
Q ss_pred EcCeecCCCCChHHHHHHhhHHHHHHHHcC-CCcceeeeccccccccccc
Q 001229 133 AFDSVLDSNSNQEDIFQVVGLPLVKNALAG-YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 133 ~FD~VFd~~asQeeVY~~v~~pLV~~vL~G-yN~tIfAYGQTGSGKTyTM 181 (1119)
+||.|.+ |+.+-.. +...+-.| ..-+++-||+.|+|||++.
T Consensus 14 ~~~~iiG----q~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 4566654 4444332 33333344 3456789999999999876
No 348
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.80 E-value=15 Score=42.98 Aligned_cols=17 Identities=47% Similarity=0.655 Sum_probs=14.1
Q ss_pred Ccceeeecccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyT 180 (1119)
.+-|+..|+||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 35688999999999964
No 349
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=35.79 E-value=9.4e+02 Score=29.81 Aligned_cols=152 Identities=23% Similarity=0.321 Sum_probs=99.5
Q ss_pred ehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001229 887 CLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALS---RAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVK 963 (1119)
Q Consensus 887 ~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~---~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk 963 (1119)
+|.+.++++|+.-+.-+|.+. +=|.-||+ |-++-.|-+=|-|.+|-+||....+- |-+-=.-+=
T Consensus 309 ~~aek~~~EL~~Ek~c~eEL~----------~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~eg---I~dVKkaAa 375 (488)
T PF06548_consen 309 SLAEKLEMELDSEKKCTEELD----------DALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEG---IEDVKKAAA 375 (488)
T ss_pred HHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 467788888888887777654 34556775 77888999999999999999887653 222222233
Q ss_pred HHHHH-hcccCcc--hhhHHHHHHH----HhhhhhhhHHHHHHHHHhhHH------HHHHhhhhHHHHhhhhhhhhhhhh
Q 001229 964 RAAAK-AGAKGHG--SRFAKSVAAE----LSALRVERDREREFLKKENKS------LKIQLRDTAEAVHAAGELLVRLKE 1030 (1119)
Q Consensus 964 ~aaak-ag~~g~~--~~f~~~laae----~s~lr~ereke~~~~~~en~~------l~~qlrdtaeav~aagellvrl~e 1030 (1119)
||..| ||.|=+- ++=+-+|-+| ---||-|-..=+-+|||--.. |=..||+.-||+..|
T Consensus 376 kAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a--------- 446 (488)
T PF06548_consen 376 KAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVA--------- 446 (488)
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH---------
Confidence 33333 3444321 1234455554 333444444444555554443 667899999998764
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHH----HHHHHHh
Q 001229 1031 AEQAASVAEANFSGVQQENEKLKK----QIDKLKR 1061 (1119)
Q Consensus 1031 aeea~~~a~~~~~~~~qe~~k~~~----q~~klk~ 1061 (1119)
++-+..|+.-...+-++.+|||+ +|.-||.
T Consensus 447 -~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq 480 (488)
T PF06548_consen 447 -QERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQ 480 (488)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888889999999998 5555654
No 350
>PRK10865 protein disaggregation chaperone; Provisional
Probab=35.79 E-value=28 Score=45.59 Aligned_cols=45 Identities=29% Similarity=0.362 Sum_probs=27.1
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHHcCCC------cceeeeccccccccccc
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYN------VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN------~tIfAYGQTGSGKTyTM 181 (1119)
.-+..|++ |..+-..+..- |..+..|.. +.++-+|+||+|||++.
T Consensus 565 ~l~~~viG----Q~~ai~~l~~~-i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIG----QNEAVEAVSNA-IRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeC----CHHHHHHHHHH-HHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 34556665 44444444322 233334432 56788899999999986
No 351
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=35.51 E-value=21 Score=40.25 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.4
Q ss_pred CCCcceeeeccccccccccc
Q 001229 162 GYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 162 GyN~tIfAYGQTGSGKTyTM 181 (1119)
.-+.+|.-||+-|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45778999999999999976
No 352
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=35.42 E-value=24 Score=41.39 Aligned_cols=44 Identities=23% Similarity=0.487 Sum_probs=31.5
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
|.|..|.+ |+++ ..-++-.+++..-+-|+-.|.+|+|||..+-+
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r~ 44 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVRA 44 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHH
Confidence 55666655 4433 33455667777677789999999999998755
No 353
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=35.35 E-value=24 Score=39.39 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=20.1
Q ss_pred HhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 150 VVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 150 ~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+...++..+..|.+ |+-+|++|+|||...
T Consensus 9 ~l~~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 9 RVTSRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 333444555556654 556899999999865
No 354
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.27 E-value=1.3e+03 Score=31.19 Aligned_cols=51 Identities=29% Similarity=0.489 Sum_probs=41.4
Q ss_pred hhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 001229 890 DELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADL 941 (1119)
Q Consensus 890 ~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l 941 (1119)
|-++.|++--|+-+|++..+++.=-.--.+|+|-+--| +|---||||.+|+
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA-lGAE~MV~qLtdk 456 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA-LGAEEMVEQLTDK 456 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHhh
Confidence 34678899999999999999987666667788777655 5888999999973
No 355
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=35.23 E-value=3.8e+02 Score=29.37 Aligned_cols=87 Identities=20% Similarity=0.294 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHhhhhhhh---HHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 001229 976 SRFAKSVAAELSALRVER---DREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKL 1052 (1119)
Q Consensus 976 ~~f~~~laae~s~lr~er---eke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~ 1052 (1119)
..-|++|-.||-.+|.-- +|+..-+..||++|..=|...=+=|.-...-|.-..---.+...++.|...++++...|
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999998743 34556678889988777665444444444444433333344444555555444444444
Q ss_pred HHHHHHHHhh
Q 001229 1053 KKQIDKLKRK 1062 (1119)
Q Consensus 1053 ~~q~~klk~k 1062 (1119)
+.+-+-|.-+
T Consensus 106 k~e~evL~qr 115 (201)
T PF13851_consen 106 KWEHEVLEQR 115 (201)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 356
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=35.22 E-value=33 Score=41.65 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=16.1
Q ss_pred Ccceeeecccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~ 182 (1119)
...|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3568889999999999974
No 357
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=35.19 E-value=2.3e+02 Score=27.52 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=51.5
Q ss_pred HHHHhhhhHHHHhhhhhhhhhh----hhHHHHH----------HHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001229 1007 LKIQLRDTAEAVHAAGELLVRL----KEAEQAA----------SVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQ 1072 (1119)
Q Consensus 1007 l~~qlrdtaeav~aagellvrl----~eaeea~----------~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~ 1072 (1119)
|+.|+-+++-.|+.|=|.|.|= =-+.+.. +--+++...++.++..+..+++.|+++.+.|..-.++
T Consensus 2 l~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 2 LKKKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766551 1111211 1246788899999999999999999999999999888
Q ss_pred HHh
Q 001229 1073 YLA 1075 (1119)
Q Consensus 1073 ~la 1075 (1119)
+|+
T Consensus 82 Ll~ 84 (87)
T PF12709_consen 82 LLK 84 (87)
T ss_pred HHH
Confidence 874
No 358
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.13 E-value=2.1e+02 Score=30.37 Aligned_cols=69 Identities=32% Similarity=0.491 Sum_probs=31.3
Q ss_pred hcccceehhhhhhhhHHHhhHHHHHHHHHHhH-HHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001229 881 MESEWICLTDELRVDIESSRRHAERVESELRL-EKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIME 957 (1119)
Q Consensus 881 ~es~wi~lt~elr~~le~~r~~~ek~~~el~~-ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~ 957 (1119)
+|.+-+.+-|.+|.+-..-+...+.++.|-+. +.+| ..+.|-. .|+=|+.++|--+|+.|..||+.+|-
T Consensus 76 ~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~-~~~~~q~-------~rlee~e~~l~~e~~~l~er~~e~l~ 145 (158)
T PF09744_consen 76 AEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKL-KNLSDQS-------SRLEEREAELKKEYNRLHERERELLR 145 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhc-------cccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555544444455555544321 1122 2333322 24455555555555555555555543
No 359
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=35.04 E-value=9.8e+02 Score=29.78 Aligned_cols=52 Identities=21% Similarity=0.508 Sum_probs=35.4
Q ss_pred hhhhHHHHHhH-------hHHHHHHHHhhhhh----h--hhcccccccccccccchhHHHHHHHHHHHHhhcc
Q 001229 774 PIKKENELENI-------CTEQAAKIEQLNRL----E--VQEVPSHQNGNISFEMNEKEVLLKEIESLRTKLQ 833 (1119)
Q Consensus 774 ~~~re~~le~~-------c~~qa~~i~ql~~l----e--~~~~~~~~~~~~~~~~~e~e~l~~ei~~l~~~l~ 833 (1119)
.....|+|-++ =.||-.+|+.|-+= | +|++| .+..--+|+..=|-.||..+.
T Consensus 308 pleedmaLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ--------~k~~kQqvfvDiinkLk~niE 372 (527)
T PF15066_consen 308 PLEEDMALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQ--------MKITKQQVFVDIINKLKENIE 372 (527)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHH
Confidence 44556777554 35788999988653 3 66777 555666777777777777765
No 360
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=35.02 E-value=4.1e+02 Score=27.19 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 001229 948 LVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA 1017 (1119)
Q Consensus 948 l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea 1017 (1119)
|-.|+..|..+++++.+.-..|.. +..+-++..+..+.|-..+..+.+.+|++
T Consensus 33 l~~R~~~I~~~l~~a~~~~~~a~~-----------------~~~e~~~~l~~a~~ea~~i~~~a~~ea~~ 85 (156)
T PRK05759 33 LEERQKKIADGLAAAERAKKELEL-----------------AQAKYEAQLAEARAEAAEIIEQAKKRAAQ 85 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999998776665543 34444444444555555555555555544
No 361
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=35.00 E-value=20 Score=38.90 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=23.7
Q ss_pred hhHHHHHHHHcCC---Ccceeeeccccccccccc
Q 001229 151 VGLPLVKNALAGY---NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 151 v~~pLV~~vL~Gy---N~tIfAYGQTGSGKTyTM 181 (1119)
++-+-++.++.|- ..+++.+|.+|+|||+-.
T Consensus 9 tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 9 TGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred cCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 3456778888643 677888999999998754
No 362
>PRK05580 primosome assembly protein PriA; Validated
Probab=34.88 E-value=17 Score=46.21 Aligned_cols=35 Identities=31% Similarity=0.287 Sum_probs=22.5
Q ss_pred CCCChHHHHHHhhHHHHHHHHcC-CCcceeeecccccccccccc
Q 001229 140 SNSNQEDIFQVVGLPLVKNALAG-YNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 140 ~~asQeeVY~~v~~pLV~~vL~G-yN~tIfAYGQTGSGKTyTM~ 182 (1119)
....|.++++.+. +| .+..++.+|+||||||.+.+
T Consensus 145 Lt~~Q~~ai~~i~--------~~~~~~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 145 LNPEQAAAVEAIR--------AAAGFSPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCHHHHHHHHHHH--------hccCCCcEEEECCCCChHHHHHH
Confidence 3445555554443 32 33458899999999997653
No 363
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=34.87 E-value=14 Score=38.01 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.2
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
+..+-||.+|+|||+.|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45667899999999876
No 364
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=34.84 E-value=80 Score=31.15 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=23.7
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1017 AVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1017 av~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
+|.+||--+-.---|+|...+=+. =+.|+++||+|++.||...++.|
T Consensus 46 sir~ag~~f~krE~A~E~~Y~r~~-----------EkEqL~~Lk~kl~~e~~~~~k~i 92 (100)
T PF04568_consen 46 SIRAAGGAFGKREAAQEEQYFRKK-----------EKEQLKKLKEKLKEEIEHHRKEI 92 (100)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCCccchHHHhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567666655545544433222 23345555555555555555544
No 365
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=34.80 E-value=14 Score=43.03 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=14.0
Q ss_pred eeeeccccccccccccC
Q 001229 167 LLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM~G 183 (1119)
...||+|||||++-+-.
T Consensus 90 ~~VYGPTG~GKSqLlRN 106 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRN 106 (369)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45699999999998753
No 366
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=34.69 E-value=24 Score=40.41 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=21.1
Q ss_pred hHHHHHHHHcCCCcceeeecccccccccccc
Q 001229 152 GLPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 152 ~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
..+++..++.+. ..|+-.|.||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 345666666544 456667999999999764
No 367
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=34.65 E-value=6.1e+02 Score=31.96 Aligned_cols=105 Identities=22% Similarity=0.396 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHH
Q 001229 931 HARMVEHYADLQEKY---NDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSL 1007 (1119)
Q Consensus 931 har~~e~y~~l~e~~---~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l 1007 (1119)
|..|-++|.|....+ .+|..+-+.+.+-|.||-+.-..-+ +..+|.. .-.+-..|
T Consensus 31 ~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~-----------i~~~l~~-----------a~~e~~~L 88 (593)
T PF06248_consen 31 HSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENE-----------IQPQLRD-----------AAEELQEL 88 (593)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccch-----------hHHHHHH-----------HHHHHHHH
Confidence 567778888777544 3455555555555655543311111 1111111 11233444
Q ss_pred HHHhhhhHHHHhhhhhhh---hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001229 1008 KIQLRDTAEAVHAAGELL---VRLKEAEQAASVAEANFSGVQQENEKLKKQIDKL 1059 (1119)
Q Consensus 1008 ~~qlrdtaeav~aagell---vrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~kl 1059 (1119)
+.||+.+...+++...|. =+|+++++| ..++++..|-+-.+++++.|+.+
T Consensus 89 ~~eL~~~~~~l~~L~~L~~i~~~l~~~~~a--l~~~~~~~Aa~~L~~~~~~L~~l 141 (593)
T PF06248_consen 89 KRELEENEQLLEVLEQLQEIDELLEEVEEA--LKEGNYLDAADLLEELKSLLDDL 141 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHhc
Confidence 445555544444433221 122333332 44577888888888888888876
No 368
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=34.51 E-value=19 Score=38.81 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=23.5
Q ss_pred hHHHHHHHHcC---CCcceeeeccccccccccc
Q 001229 152 GLPLVKNALAG---YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 152 ~~pLV~~vL~G---yN~tIfAYGQTGSGKTyTM 181 (1119)
+-+-+|.++.| ....+.-+|++|||||..+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 44667888875 3567789999999999765
No 369
>PRK11281 hypothetical protein; Provisional
Probab=34.42 E-value=9.8e+02 Score=32.99 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHH
Q 001229 938 YADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKI 1009 (1119)
Q Consensus 938 y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~ 1009 (1119)
=.+|+.+-.+.=++=+..+..++..|+.......+=...-=...|-+.|+.+..+-+...+.|-+.|..|-.
T Consensus 82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~ 153 (1113)
T PRK11281 82 TEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVS 153 (1113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666666666677778888888887433332111011112446666666666666666666666655543
No 370
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=34.39 E-value=23 Score=41.51 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=21.3
Q ss_pred HHHHHcCCCcceeeeccccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
++.+.+|.+..+|..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 45567888878899999999999874
No 371
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=34.36 E-value=23 Score=44.70 Aligned_cols=43 Identities=23% Similarity=0.446 Sum_probs=30.6
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..+||.+++. ...... ++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGq----s~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQ----ERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeC----cHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4577777753 333333 445556788888999999999999876
No 372
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=34.32 E-value=1.2e+03 Score=30.52 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=48.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHhhcCCCcccccCcc
Q 001229 1020 AAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKME---MITMKQYLAESKLPESALQPLY 1088 (1119)
Q Consensus 1020 aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e---~~t~~~~laes~lp~~~~~~~~ 1088 (1119)
-|.+|=.+|++-|.-..-.-+..+.+++|.+-|.+|+-|.+..++.. +..|+.|+-|--.|+.--+.|.
T Consensus 170 k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we 241 (739)
T PF07111_consen 170 KAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWE 241 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHH
Confidence 34455566655555444445778889999999999999999999998 6677888866655554433333
No 373
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=34.18 E-value=22 Score=43.98 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=29.1
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+..+|+.+++.+. . +..+...++.+....|+-||++|+|||+.-
T Consensus 60 rp~~f~~iiGqs~----~----i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 60 RPKSFDEIIGQEE----G----IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CcCCHHHeeCcHH----H----HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 3456788877442 2 223333445666777888999999999854
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=34.07 E-value=37 Score=39.83 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=16.1
Q ss_pred Ccceeeecccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~ 182 (1119)
...|.-.|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 3578889999999999973
No 375
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.06 E-value=5.3e+02 Score=26.41 Aligned_cols=100 Identities=20% Similarity=0.323 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhh
Q 001229 934 MVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRD 1013 (1119)
Q Consensus 934 ~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrd 1013 (1119)
.+.+|-.||+.---++..-..+--.+.|+++|-- ||. .|-|
T Consensus 11 ~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~-----------------Ele----------------------~l~e 51 (119)
T COG1382 11 QLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALE-----------------ELE----------------------KLDE 51 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHh----------------------cCCc
Confidence 4555666666555555555566666666665532 111 3455
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001229 1014 TAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQY 1073 (1119)
Q Consensus 1014 taeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~ 1073 (1119)
-|.---.-|.+||+- .=++|+.--++|....+=...-|.+|+++|..+++.==.-+.+.
T Consensus 52 D~~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 52 DAPVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred ccHHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777899999998 88999999999999999999999999999988876533333333
No 376
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=33.92 E-value=7e+02 Score=32.52 Aligned_cols=91 Identities=18% Similarity=0.279 Sum_probs=65.4
Q ss_pred hhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccC
Q 001229 894 VDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKG 973 (1119)
Q Consensus 894 ~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g 973 (1119)
+-||.++..+-.+.++++ .|+-.+.....---++-++|+|+...-..+--+-+++.|-++-.|+-+.+-|+.-
T Consensus 552 ~~le~~kk~~~e~~~~~~-------~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 552 QSLEMLKKKAQEAKQSLE-------DLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 346666666665555543 3444444444444467889999999999998999999999999999999988877
Q ss_pred cchhhHHHHHHHHhhhhh
Q 001229 974 HGSRFAKSVAAELSALRV 991 (1119)
Q Consensus 974 ~~~~f~~~laae~s~lr~ 991 (1119)
.|.-=...|+-||..-|.
T Consensus 625 ~~~s~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 625 SGASADEVLAEELKEYKE 642 (698)
T ss_pred ccccccHHHHHHHHHHHh
Confidence 765666777777766553
No 377
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=33.85 E-value=5.4e+02 Score=28.67 Aligned_cols=102 Identities=24% Similarity=0.356 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcccCc----chhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH-----Hhhh--------
Q 001229 959 VAEVKRAAAKAGAKGH----GSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA-----VHAA-------- 1021 (1119)
Q Consensus 959 i~~vk~aaakag~~g~----~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea-----v~aa-------- 1021 (1119)
..||+-.+-+-|++|- .-.|..-+.+++..+- +|-+.|+++|..|+.+|.-=+.+ |+.|
T Consensus 8 ~~dI~ek~F~~~~rGy~~eEVdeFLD~V~~dye~~l----~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~ 83 (212)
T COG3599 8 PKDITEKEFGTGFRGYDEEEVDEFLDDVIDDYEQLL----DENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELK 83 (212)
T ss_pred HHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3456666666699982 2349999999888887 45666788888888777544443 2222
Q ss_pred ---hhhhhhhhhHHHHHHHHHHhhhhhHHHHH------HHHHHHHHHHhhhhhH
Q 001229 1022 ---GELLVRLKEAEQAASVAEANFSGVQQENE------KLKKQIDKLKRKHKME 1066 (1119)
Q Consensus 1022 ---gellvrl~eaeea~~~a~~~~~~~~qe~~------k~~~q~~klk~kh~~e 1066 (1119)
+.-..++. +.|...|+.=+..+.++++ |...+++-||+.-..+
T Consensus 84 ~~a~~ea~~il--~~a~~~a~~v~~~a~~~a~~~~~~a~~~~e~e~~~~q~~~~ 135 (212)
T COG3599 84 QAAEAEADDIL--KRASAQAQRVFGKAQYKADRYLEDAKIAQELEDLKRQAQVE 135 (212)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111 2344466666666677776 6667777777765544
No 378
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=33.66 E-value=2.7e+02 Score=24.56 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=59.1
Q ss_pred HHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001229 998 EFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRK 1062 (1119)
Q Consensus 998 ~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~k 1062 (1119)
+.|.+|+..|+.=.+-..|..+-|-+.|.-|+.--+-..-+..+...+........+-|.++.|+
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 35778899999999999999999999999999999999999999999999999999999888775
No 379
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=33.64 E-value=4.9e+02 Score=28.54 Aligned_cols=93 Identities=20% Similarity=0.294 Sum_probs=70.4
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHH------------HHHhhhhhHHHHH
Q 001229 983 AAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASV------------AEANFSGVQQENE 1050 (1119)
Q Consensus 983 aae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~------------a~~~~~~~~qe~~ 1050 (1119)
-++|+-|-.-...|-+.|+...+..+.+.|++--=+.-..+=|.|++..=..... -+.+...++++.+
T Consensus 56 e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~ 135 (194)
T PF15619_consen 56 EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQ 135 (194)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Confidence 4788888888888999999999888888888888787777777777766554322 2456667777778
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHh
Q 001229 1051 KLKKQIDKLKRKHKMEMITMKQYLA 1075 (1119)
Q Consensus 1051 k~~~q~~klk~kh~~e~~t~~~~la 1075 (1119)
...+.|..|.++.+..-.+.++-|+
T Consensus 136 ~~~~ki~~Lek~leL~~k~~~rql~ 160 (194)
T PF15619_consen 136 EKEKKIQELEKQLELENKSFRRQLA 160 (194)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888888877777776663
No 380
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=33.41 E-value=1.2e+02 Score=30.00 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHH
Q 001229 943 EKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDRERE 998 (1119)
Q Consensus 943 e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~ 998 (1119)
..|..+...|+.+.+-+.+|++.-...+.++. .|++||-.|..+.+..++
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~------el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQ------ELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhcc
Confidence 45667777788888888888888877777765 477888777776655444
No 381
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=33.40 E-value=19 Score=42.19 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=14.1
Q ss_pred eeeecccccccccccc
Q 001229 167 LLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM~ 182 (1119)
++.+|+||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999875
No 382
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=33.34 E-value=17 Score=46.67 Aligned_cols=51 Identities=25% Similarity=0.457 Sum_probs=29.2
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHH-HHHcCC----Ccceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVK-NALAGY----NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~Gy----N~tIfAYGQTGSGKTyTM 181 (1119)
.++||.|-+.+..-..+.+.+..|+-. .++..+ ...|+-||++|+|||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 467777765443334444444333221 122222 245889999999999865
No 383
>PRK10698 phage shock protein PspA; Provisional
Probab=33.33 E-value=3.4e+02 Score=30.16 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhh----
Q 001229 953 RAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRL---- 1028 (1119)
Q Consensus 953 r~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl---- 1028 (1119)
|-|.+.+.+||++.|++-..=. +.+|+-+...-.-+...=|+++ ||++-=|=|-|-
T Consensus 34 ~em~~~l~~~r~alA~~~A~~k---------------~~er~~~~~~~~~~~~e~kA~~-----Al~~G~EdLAr~AL~~ 93 (222)
T PRK10698 34 QEMEDTLVEVRSTSARALAEKK---------------QLTRRIEQAEAQQVEWQEKAEL-----ALRKEKEDLARAALIE 93 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH-----HHHCCCHHHHHHHHHH
Q ss_pred -hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhh
Q 001229 1029 -KEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKM 1065 (1119)
Q Consensus 1029 -~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~ 1065 (1119)
+.+++.+..-+......++..++|+.++.+|+.|...
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 384
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=33.21 E-value=62 Score=34.59 Aligned_cols=41 Identities=39% Similarity=0.619 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhh
Q 001229 939 ADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDT 1014 (1119)
Q Consensus 939 ~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdt 1014 (1119)
.|+|-|||+-++|.- ++| .|| .|++-|+.++++|+..|||=
T Consensus 3 eD~EsklN~AIERna-lLE--------------------------~EL--------dEKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 3 EDFESKLNQAIERNA-LLE--------------------------SEL--------DEKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHHH-HHH--------------------------HHH--------HHHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHhH-HHH--------------------------HHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 589999999888753 222 344 56777888888888888873
No 385
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=33.16 E-value=33 Score=43.84 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=25.6
Q ss_pred HHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 146 DIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 146 eVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.||...-.-...-+-.|.|-||+.-|.+|||||.|.
T Consensus 74 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 355443333322233789999999999999999986
No 386
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=33.11 E-value=54 Score=41.57 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=34.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH--H--hhcCCCcccccC
Q 001229 1038 AEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQY--L--AESKLPESALQP 1086 (1119)
Q Consensus 1038 a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~--l--aes~lp~~~~~~ 1086 (1119)
|+|=...|...++....+|||||++|...|..+|+. | ||-+|=.....|
T Consensus 362 aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~~p 414 (669)
T PF08549_consen 362 AEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVEDP 414 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCCc
Confidence 333344566677788899999999999999998863 2 666665555433
No 387
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=33.05 E-value=19 Score=38.18 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=18.7
Q ss_pred HHHHcCC---Ccceeeeccccccccccc
Q 001229 157 KNALAGY---NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 157 ~~vL~Gy---N~tIfAYGQTGSGKTyTM 181 (1119)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455443 567889999999999764
No 388
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=33.01 E-value=27 Score=37.40 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=17.7
Q ss_pred chhhHHHHHHHHhhhhhhhHH---HHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhh
Q 001229 975 GSRFAKSVAAELSALRVERDR---EREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKE 1030 (1119)
Q Consensus 975 ~~~f~~~laae~s~lr~erek---e~~~~~~en~~l~~qlrdtaeav~aagellvrl~e 1030 (1119)
.+....+|+..|..|-++|+| +.+-|..||..|+..|..|+...|....-.+.|-|
T Consensus 6 ~aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpe 64 (181)
T PF09311_consen 6 EAQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPE 64 (181)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHT-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcc
Confidence 345677889999999999999 66779999999999999999998777666555543
No 389
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.86 E-value=16 Score=43.99 Aligned_cols=19 Identities=37% Similarity=0.328 Sum_probs=15.6
Q ss_pred cceeeeccccccccccccC
Q 001229 165 VSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~G 183 (1119)
..|+-.|+||+|||+|+..
T Consensus 222 ~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3667779999999999854
No 390
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=32.63 E-value=23 Score=44.87 Aligned_cols=28 Identities=36% Similarity=0.347 Sum_probs=19.4
Q ss_pred HHHHHHcCCCcceeeeccccccccccccC
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.|..++..- ..++-.|++|||||||+..
T Consensus 165 Av~~~l~~~-~~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 165 AVSFALSSK-DLFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred HHHHHhcCC-CeEEEEcCCCCCHHHHHHH
Confidence 344455432 3466899999999999854
No 391
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=32.35 E-value=28 Score=42.77 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=19.4
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.| +++..+||||||.+.
T Consensus 151 aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHHH
Confidence 4556678876 678889999999653
No 392
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=32.28 E-value=17 Score=46.62 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=16.2
Q ss_pred Ccceeeecccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~ 182 (1119)
|..++..|.||||||++|-
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 4568889999999999983
No 393
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=32.15 E-value=17 Score=40.21 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=17.9
Q ss_pred CcceeeeccccccccccccCCC
Q 001229 164 NVSLLSYGQTGSGKTYTMWGPP 185 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~G~~ 185 (1119)
...++-||..|+|||++.-+-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4568999999999999886543
No 394
>PRK04328 hypothetical protein; Provisional
Probab=32.10 E-value=24 Score=39.21 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=22.7
Q ss_pred hHHHHHHHHcC---CCcceeeeccccccccc
Q 001229 152 GLPLVKNALAG---YNVSLLSYGQTGSGKTY 179 (1119)
Q Consensus 152 ~~pLV~~vL~G---yN~tIfAYGQTGSGKTy 179 (1119)
+-+-++.++.| ...+++-+|.+|+|||.
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 44667888876 47888899999999975
No 395
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.03 E-value=1.9e+02 Score=27.50 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=52.6
Q ss_pred HHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001229 903 AERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEV 962 (1119)
Q Consensus 903 ~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~v 962 (1119)
..=++||++..|.=...|.+..+-|-.|+.-+...+..|++-|..-=+|=|....-+++|
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~v 79 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345789999999999999999999999999999999999999999888888887777665
No 396
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=32.00 E-value=5.6e+02 Score=26.01 Aligned_cols=116 Identities=21% Similarity=0.282 Sum_probs=80.6
Q ss_pred hhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001229 891 ELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAG 970 (1119)
Q Consensus 891 elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag 970 (1119)
.++.+++.+......++.+|+...+-..+..+=..+-|.=||.-++....|.+.+..+=.........++..|.....+-
T Consensus 14 ~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e 93 (132)
T PF07926_consen 14 RLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESE 93 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888889999999999999999999999999999999999999999999988777777766666555442221
Q ss_pred ccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhh
Q 001229 971 AKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLR 1012 (1119)
Q Consensus 971 ~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlr 1012 (1119)
..-.. ==..|-.||+.++. =..-|.++|+=|-.||-
T Consensus 94 ~sw~~--qk~~le~e~~~~~~----r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 94 ASWEE--QKEQLEKELSELEQ----RIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HhHHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 11000 01123333333222 22347777777777763
No 397
>CHL00176 ftsH cell division protein; Validated
Probab=31.98 E-value=19 Score=45.71 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=30.6
Q ss_pred HHhHhHHHHHHHHhhhhhhhhcccccccccccccchhHHHHHHH
Q 001229 781 LENICTEQAAKIEQLNRLEVQEVPSHQNGNISFEMNEKEVLLKE 824 (1119)
Q Consensus 781 le~~c~~qa~~i~ql~~le~~~~~~~~~~~~~~~~~e~e~l~~e 824 (1119)
+=+-|-++|-+|-+=|+=.|.++-++|-.+..++-.|=+.|+++
T Consensus 582 ~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~ 625 (638)
T CHL00176 582 ILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNS 625 (638)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhh
Confidence 44568889999988888878888877766555555554555443
No 398
>PF10789 Phage_RpbA: Phage RNA polymerase binding, RpbA; InterPro: IPR019725 Upon infection, the RpbA encoded phage protein binds to the ADP-ribosylated core RNA polymerase and modulates function to preferentially bind T4 promoters. This is a non-essential protein to the phage life cycle.
Probab=31.90 E-value=72 Score=31.92 Aligned_cols=38 Identities=26% Similarity=0.547 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHH
Q 001229 915 KVTEELDDALSRAVLGHARMVEHYAD----LQEKYNDLVSRHRA 954 (1119)
Q Consensus 915 ~c~eel~~al~~a~~ghar~~e~y~~----l~e~~~~l~~~hr~ 954 (1119)
+|.+|+.+.|| ||.+-+|+ ++|.+ .+++|++|..+||.
T Consensus 26 ~~~d~~~~~lq-~~pq~vRf-~lY~~iD~~V~~~wi~Lm~~~r~ 67 (108)
T PF10789_consen 26 QMPDEDKERLQ-AMPQDVRF-ELYKEIDEDVSDKWIELMRKHRE 67 (108)
T ss_pred cCCHHHHHHHH-hCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788887776 67777775 78875 57899999999994
No 399
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=31.87 E-value=17 Score=43.29 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.1
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
+--++.+|.||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 345889999999999876
No 400
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.87 E-value=38 Score=40.26 Aligned_cols=49 Identities=29% Similarity=0.525 Sum_probs=31.4
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHH-HH--cCCC--cceeeecccccccccc
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKN-AL--AGYN--VSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~-vL--~GyN--~tIfAYGQTGSGKTyT 180 (1119)
-+|+.|=+-+..-++|.+.+-.||.+- .| -|.. -.|+-||+.|+|||-.
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLL 201 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHH
Confidence 344444443444467777777777653 33 3554 4589999999999853
No 401
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=31.60 E-value=23 Score=38.13 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=23.8
Q ss_pred hhHHHHHHHHcC-C--Ccceeeecccccccccccc
Q 001229 151 VGLPLVKNALAG-Y--NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 151 v~~pLV~~vL~G-y--N~tIfAYGQTGSGKTyTM~ 182 (1119)
++-|-++.++.| + ...+.-||.+|+|||....
T Consensus 7 tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 7 TGCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 345668888854 3 4567899999999998653
No 402
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=31.52 E-value=18 Score=36.18 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=12.7
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998864
No 403
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=31.50 E-value=25 Score=37.59 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=24.0
Q ss_pred hhHHHHHHHHc-CC--Ccceeeecccccccccccc
Q 001229 151 VGLPLVKNALA-GY--NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 151 v~~pLV~~vL~-Gy--N~tIfAYGQTGSGKTyTM~ 182 (1119)
++-+-++.++. |+ ...+.-+|++|+|||..+.
T Consensus 3 tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 3 TGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 34567888886 44 4567889999999998664
No 404
>PF13173 AAA_14: AAA domain
Probab=31.44 E-value=19 Score=35.51 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.1
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
-.++-+|+.|+|||+.|.
T Consensus 3 ~~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLK 20 (128)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357889999999999873
No 405
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=31.42 E-value=25 Score=43.27 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=31.7
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..+.||.+++.+..=..+++.+ .. +...+..|+-+|.+||||++.-
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~-----~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQA-----RV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred ccCccCceEECCHHHHHHHHHH-----HH-HhCcCCCEEEECCCCccHHHHH
Confidence 3588999988655433333332 22 2467888999999999999864
No 406
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=31.37 E-value=6.4e+02 Score=26.51 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 001229 948 LVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA 1017 (1119)
Q Consensus 948 l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea 1017 (1119)
|-.|+..|..+|++.+++- .|...++.+-|+.....+.|-..+..+-+.+|++
T Consensus 39 le~R~~~I~~~l~~Ae~~k-----------------~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~ 91 (167)
T PRK14475 39 LDAYAAKIQAELDEAQRLR-----------------EEAQALLADVKAEREEAERQAAAMLAAAKADARR 91 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888765543 4455566777777777777777777777777764
No 407
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=31.20 E-value=13 Score=42.29 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=17.9
Q ss_pred cCCCcceeeecccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyT 180 (1119)
.|++-+||..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 48889999999999999974
No 408
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=31.17 E-value=20 Score=37.12 Aligned_cols=14 Identities=36% Similarity=0.574 Sum_probs=12.7
Q ss_pred eeeecccccccccc
Q 001229 167 LLSYGQTGSGKTYT 180 (1119)
Q Consensus 167 IfAYGQTGSGKTyT 180 (1119)
|+.+|..|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999985
No 409
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=31.14 E-value=7.6e+02 Score=27.92 Aligned_cols=40 Identities=3% Similarity=0.135 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 001229 978 FAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA 1017 (1119)
Q Consensus 978 f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea 1017 (1119)
|..-.+.+|+.|..+....|+-+-..+..|...+.+|...
T Consensus 88 l~~~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~ 127 (234)
T cd07686 88 LNSGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKT 127 (234)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556889999999999999999988888888888885543
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.13 E-value=18 Score=44.42 Aligned_cols=18 Identities=39% Similarity=0.324 Sum_probs=15.5
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
..|.-.|+||+|||+|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467788999999999984
No 411
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=31.05 E-value=27 Score=40.29 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.3
Q ss_pred cCCCcceeeeccccccccccccC
Q 001229 161 AGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.+-+.-++-||+.|||||.||.-
T Consensus 20 ~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 20 SSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred cCCceEEEEECCCCCCHHHHHHH
Confidence 45667799999999999999843
No 412
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=31.01 E-value=2.1e+02 Score=35.23 Aligned_cols=48 Identities=6% Similarity=-0.081 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001229 918 EELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRA 965 (1119)
Q Consensus 918 eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~a 965 (1119)
..-.-.+-++..||-=.+..-..+..+++.|+..-..+-.+++.+..-
T Consensus 243 ~~~~~~~~~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~ 290 (460)
T KOG1363|consen 243 SSPAAVTNKASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLL 290 (460)
T ss_pred chhhhhhcchhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHH
Confidence 443334444556667777777788889999999888888877776654
No 413
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=30.99 E-value=19 Score=47.40 Aligned_cols=19 Identities=47% Similarity=0.657 Sum_probs=16.9
Q ss_pred Ccceeeecccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~ 182 (1119)
|+-.+.+|+||||||++|-
T Consensus 475 n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATLT 493 (893)
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 7778999999999999983
No 414
>PF13514 AAA_27: AAA domain
Probab=30.97 E-value=1.5e+03 Score=30.84 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=8.9
Q ss_pred hhhhhHHHhhHHHHHHHHHH
Q 001229 891 ELRVDIESSRRHAERVESEL 910 (1119)
Q Consensus 891 elr~~le~~r~~~ek~~~el 910 (1119)
.+..+++..+...+.++.+|
T Consensus 805 ~l~~~~~~~~~~~~~~~~~l 824 (1111)
T PF13514_consen 805 RLQEQLEELEEELEQAEEEL 824 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 415
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=30.93 E-value=28 Score=45.24 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=20.5
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..+.+|.|+.|.| +||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 455667999998876 9999999863
No 416
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=30.87 E-value=9.2e+02 Score=28.21 Aligned_cols=158 Identities=22% Similarity=0.289 Sum_probs=94.9
Q ss_pred hhhhhcccceehhhhhhhhHHHhhHHHHHHHHHHhHHHhh--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001229 877 RWTEMESEWICLTDELRVDIESSRRHAERVESELRLEKKV--TEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRA 954 (1119)
Q Consensus 877 ~w~e~es~wi~lt~elr~~le~~r~~~ek~~~el~~ek~c--~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~ 954 (1119)
+-.|.|-++-.+++-+...|..-....+..... ..+.| .++|.+=|. -+++||. +-|.|.+-+-+|+-
T Consensus 97 ~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~--~~k~~~eN~~L~eKlK-------~l~eQye-~rE~~~~~~~k~ke 166 (309)
T PF09728_consen 97 RAREEEEKRKELSEKFQATLKDIQAQMEEQSER--NIKLREENEELREKLK-------SLIEQYE-LREEHFEKLLKQKE 166 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHhhHHH
Confidence 344556666666777776666554444322111 11122 223333322 3788886 77888888889999
Q ss_pred HHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHH
Q 001229 955 IMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQA 1034 (1119)
Q Consensus 955 i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea 1034 (1119)
..--+.+.|=..+.+-......++..--..-| +.-..-..|.++-..|+.||-==+ =...|=+.+
T Consensus 167 LE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l-----~~~~~~~~~~~~E~~Lr~QL~~Y~----------~Kf~efq~t 231 (309)
T PF09728_consen 167 LEVQLAEAKLEQQQEEAEQEKEKAKQEKEILL-----EEAAQVQTLKETEKELREQLNLYS----------EKFEEFQDT 231 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 99989888877777655553322211110000 000134456777788888874322 256677788
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHH
Q 001229 1035 ASVAEANFSGVQQENEKLKKQIDKL 1059 (1119)
Q Consensus 1035 ~~~a~~~~~~~~qe~~k~~~q~~kl 1059 (1119)
++-+-+-|.-..+|.+++-|.|-+|
T Consensus 232 L~kSNe~F~tfk~Emekm~Kk~kkl 256 (309)
T PF09728_consen 232 LNKSNEVFETFKKEMEKMSKKIKKL 256 (309)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998888777665
No 417
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=30.78 E-value=25 Score=41.13 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCcceeeecccccccccccc
Q 001229 153 LPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 153 ~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
..++..++.+. +.|+-.|.||||||.+|.
T Consensus 168 ~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 168 ARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 45666666643 678889999999998774
No 418
>PRK00131 aroK shikimate kinase; Reviewed
Probab=30.67 E-value=20 Score=36.24 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.6
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
-.|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999864
No 419
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=30.65 E-value=29 Score=44.28 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=25.1
Q ss_pred CCCCChHHHHHHhhHHHHHHHHcCCCcceeeecccccccccccc
Q 001229 139 DSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 139 d~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.....|..++..+. .+.-.++..-++..|+||||||.+..
T Consensus 261 ~lt~~Q~~ai~~I~----~d~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 261 ELTGAQKRVVAEIL----ADLASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred CCCHHHHHHHHHHH----HhhhccCCceEEEECCCCCcHHHHHH
Confidence 34455555544433 23334455568999999999998653
No 420
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.61 E-value=2.7e+02 Score=35.97 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=21.5
Q ss_pred HHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHH
Q 001229 984 AELSALRVERDREREFLKKENKSLKIQLRDTAE 1016 (1119)
Q Consensus 984 ae~s~lr~ereke~~~~~~en~~l~~qlrdtae 1016 (1119)
++|-.-=++.+-+-+++.+-|..|+-||-=-++
T Consensus 94 dklE~~Lankda~lrq~eekn~slqerLelaE~ 126 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKNRSLQERLELAEP 126 (916)
T ss_pred HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhH
Confidence 344433445555777888999999988764433
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.49 E-value=38 Score=43.90 Aligned_cols=18 Identities=44% Similarity=0.344 Sum_probs=15.6
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
.+|.-.|+||+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 467789999999999984
No 422
>CHL00181 cbbX CbbX; Provisional
Probab=30.28 E-value=45 Score=38.06 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=13.3
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999975
No 423
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.24 E-value=1.2e+02 Score=34.82 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=13.1
Q ss_pred HHHHHHhhHHHHHHhhhh
Q 001229 997 REFLKKENKSLKIQLRDT 1014 (1119)
Q Consensus 997 ~~~~~~en~~l~~qlrdt 1014 (1119)
...|++||+.|+.|+..-
T Consensus 68 ~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345788999998887544
No 424
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=30.22 E-value=7.8e+02 Score=27.16 Aligned_cols=89 Identities=15% Similarity=0.259 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHhcccCcchhhHHHHH----HHHhhhhhhhHHHHH
Q 001229 933 RMVEHYADLQEKYNDLVSRHRA----------IMEGVAEVKRAAAKAGAKGHGSRFAKSVA----AELSALRVERDRERE 998 (1119)
Q Consensus 933 r~~e~y~~l~e~~~~l~~~hr~----------i~~gi~~vk~aaakag~~g~~~~f~~~la----ae~s~lr~ereke~~ 998 (1119)
-|+-.-|.+|+.|-.-|.+.-+ +..+...|+....+-|. ....|++.|. .+|+.+..+-+++|+
T Consensus 26 ~f~keRa~iE~eYak~L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~--~H~~~a~~L~~~v~~~l~~~~~~~~~~rK 103 (236)
T cd07651 26 SFYKERASIEEEYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAK--SHLKFAKQIRQDLEEKLAAFASSYTQKRK 103 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCCcchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655544322 22334444444433222 2346777665 456777888888888
Q ss_pred HHHHhhHHHHHHhhhhHHHHhhhhh
Q 001229 999 FLKKENKSLKIQLRDTAEAVHAAGE 1023 (1119)
Q Consensus 999 ~~~~en~~l~~qlrdtaeav~aage 1023 (1119)
.+..+...++..+-++-.+|.-|=.
T Consensus 104 ~~~~~~~k~~k~~~~~~~~l~KaK~ 128 (236)
T cd07651 104 KIQSHMEKLLKKKQDQEKYLEKARE 128 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777776555554433
No 425
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.17 E-value=2.3e+02 Score=33.59 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001229 935 VEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAK 968 (1119)
Q Consensus 935 ~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaak 968 (1119)
+|...||++-|.+|-+.||....=++++-+.-.+
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~ 36 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDK 36 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777777777776665433
No 426
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=29.97 E-value=20 Score=44.37 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=14.3
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
..|+-||++|+|||++.
T Consensus 217 ~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIA 233 (512)
T ss_pred cceEEECCCCCcHHHHH
Confidence 34888999999999865
No 427
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=29.91 E-value=27 Score=43.47 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCCcceeeeccccccccccc
Q 001229 153 LPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 153 ~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..+|..+++|.| +++..+||+|||.+.
T Consensus 19 ~~~i~~il~g~d--vlv~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRD--VLVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCC--EEEEcCCCccHhHHH
Confidence 355667788987 566679999999874
No 428
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=29.79 E-value=42 Score=42.98 Aligned_cols=21 Identities=43% Similarity=0.620 Sum_probs=19.8
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|.|-||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 689999999999999999986
No 429
>PHA02653 RNA helicase NPH-II; Provisional
Probab=29.73 E-value=36 Score=43.49 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCcceeeecccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyT 180 (1119)
.++..++.|. .|+..|+||||||..
T Consensus 171 qil~~i~~gk--dvIv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRK--PVVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCC--CEEEECCCCCCchhH
Confidence 4455566675 468999999999964
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=29.63 E-value=20 Score=32.21 Aligned_cols=15 Identities=40% Similarity=0.570 Sum_probs=12.4
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999765
No 431
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=29.60 E-value=6.5e+02 Score=30.86 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 001229 948 LVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA 1017 (1119)
Q Consensus 948 l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea 1017 (1119)
|-+|...|..+|++.+++ ..|+..++.+-|+..+..+.|-+.+..+-+.+|+.
T Consensus 30 l~~R~~~I~~~L~eAe~a-----------------~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~ 82 (445)
T PRK13428 30 MAARQDTVRQQLAESATA-----------------ADRLAEADQAHTKAVEDAKAEAARVVEEAREDAER 82 (445)
T ss_pred HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999998764 33444555555555555555555555555555543
No 432
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=29.59 E-value=20 Score=40.63 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=18.8
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|+.-.|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999999765
No 433
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=29.49 E-value=4.8e+02 Score=33.83 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHH-HH
Q 001229 932 ARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLK-IQ 1010 (1119)
Q Consensus 932 ar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~-~q 1010 (1119)
+.-||.|-..-.+|..++ ||++.++|-| +|--.||-..|++---+|+ .+...+-+++...+ .|
T Consensus 312 ~~~i~s~~~k~~~~~~~I--~ka~~~sIi~----------~gv~~r~n~~L~~rW~~L~----~~~d~~L~~~~~~~~q~ 375 (683)
T PF08580_consen 312 SKQIESKEKKKSHYFPAI--YKARVLSIID----------KGVADRLNADLAQRWLELK----EDMDSLLEDSQSSSSQQ 375 (683)
T ss_pred HHHHHHHHHHHhccHHHH--HHHHHHHhhh----------hhHHHHhhHHHHHHHHHHH----HHHHHhhhhcccccccc
Confidence 477899999999999887 2333344433 1212377789999888887 44555555665555 66
Q ss_pred hhhhH
Q 001229 1011 LRDTA 1015 (1119)
Q Consensus 1011 lrdta 1015 (1119)
|||+-
T Consensus 376 lr~si 380 (683)
T PF08580_consen 376 LRDSI 380 (683)
T ss_pred ccccc
Confidence 87764
No 434
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.20 E-value=42 Score=40.64 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.7
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
..|+-.|+||+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 567889999999999984
No 435
>PRK07261 topology modulation protein; Provisional
Probab=29.16 E-value=22 Score=37.17 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.8
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999854
No 436
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.10 E-value=21 Score=41.36 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=16.5
Q ss_pred CcceeeeccccccccccccC
Q 001229 164 NVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~G 183 (1119)
..+|+-.|.||||||++|.-
T Consensus 143 ~~siii~G~t~sGKTt~lna 162 (312)
T COG0630 143 RKSIIICGGTASGKTTLLNA 162 (312)
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 44588899999999999853
No 437
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=29.02 E-value=23 Score=35.22 Aligned_cols=16 Identities=31% Similarity=0.465 Sum_probs=13.6
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999854
No 438
>PRK11637 AmiB activator; Provisional
Probab=28.94 E-value=1.1e+03 Score=28.45 Aligned_cols=16 Identities=25% Similarity=0.086 Sum_probs=7.6
Q ss_pred HHHhHHHHHHHHHHhc
Q 001229 955 IMEGVAEVKRAAAKAG 970 (1119)
Q Consensus 955 i~~gi~~vk~aaakag 970 (1119)
-.+-+....+++.+.|
T Consensus 122 ~~~~l~~rlra~Y~~g 137 (428)
T PRK11637 122 QERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3334444455555544
No 439
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=28.92 E-value=26 Score=42.17 Aligned_cols=36 Identities=36% Similarity=0.535 Sum_probs=24.1
Q ss_pred hHHHHHHhhHHHHHHHHcCCCcceeeecccccccccc
Q 001229 144 QEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 144 QeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyT 180 (1119)
|+.+... ..++=.-+-.|.-.+.+-||+.|+|||..
T Consensus 29 Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 29 QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4544433 23444444467778888999999999964
No 440
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.84 E-value=3.7e+02 Score=25.07 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHH
Q 001229 1047 QENEKLKKQIDKLKRKHKMEMITMK 1071 (1119)
Q Consensus 1047 qe~~k~~~q~~klk~kh~~e~~t~~ 1071 (1119)
++++.|+.+.++||..|..=-..++
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444333333
No 441
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=28.83 E-value=37 Score=38.78 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=24.5
Q ss_pred CCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 140 SNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 140 ~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
+...|.++-+.+ .+.+-+|.+ ++.=.+||+|||.+.+-
T Consensus 9 ~r~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00489 9 PYPIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 455666554443 344456654 56677999999997654
No 442
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=28.83 E-value=37 Score=38.78 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=24.5
Q ss_pred CCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 140 SNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 140 ~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
+...|.++-+.+ .+.+-+|.+ ++.=.+||+|||.+.+-
T Consensus 9 ~r~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00488 9 PYPIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 455666554443 344456654 56677999999997654
No 443
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=28.81 E-value=45 Score=36.35 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=21.6
Q ss_pred HHHHHhhHHHHHHHHc-CCCcceeeeccccccccccc
Q 001229 146 DIFQVVGLPLVKNALA-GYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 146 eVY~~v~~pLV~~vL~-GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+|..++.-+...+-. |..-.|.-.|++|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 4455555444333332 33445666799999999865
No 444
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=28.55 E-value=43 Score=42.81 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=22.1
Q ss_pred HHHHHH-cCCCcceeeeccccccccccc
Q 001229 155 LVKNAL-AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL-~GyN~tIfAYGQTGSGKTyTM 181 (1119)
....++ .|.|-||+.-|.+|||||.|.
T Consensus 76 Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 76 AYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred HHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 334444 689999999999999999886
No 445
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=28.36 E-value=47 Score=42.51 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.7
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|.|-||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 689999999999999999886
No 446
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=28.25 E-value=23 Score=36.67 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=12.9
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+.+|+.|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999654
No 447
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=28.21 E-value=23 Score=40.51 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=23.2
Q ss_pred CceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccccccHH
Q 001229 400 NAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISED 444 (1119)
Q Consensus 400 NSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~~ 444 (1119)
-++|++++|= +.+| .+++|+|+--+...-++.-..++
T Consensus 185 l~kTivfVTH-----DidE---A~kLadri~vm~~G~i~Q~~~P~ 221 (309)
T COG1125 185 LGKTIVFVTH-----DIDE---ALKLADRIAVMDAGEIVQYDTPD 221 (309)
T ss_pred hCCEEEEEec-----CHHH---HHhhhceEEEecCCeEEEeCCHH
Confidence 4567777762 4554 57788888777666655554443
No 448
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=28.12 E-value=8.9e+02 Score=27.19 Aligned_cols=117 Identities=22% Similarity=0.370 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHH--------------HHHHHHhhhhhhhH-HHHHHHHHhh
Q 001229 940 DLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAK--------------SVAAELSALRVERD-REREFLKKEN 1004 (1119)
Q Consensus 940 ~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~--------------~laae~s~lr~ere-ke~~~~~~en 1004 (1119)
.|.++++.|=.+||.|.+|.+-+-+-+++ |.. ...-|++ ==.-||..||.|=- =|.+.+| -
T Consensus 73 ~~~~k~~~Lk~k~r~i~~~~drL~r~~~~-g~~-~~~eF~epkV~~LW~~A~~~nFT~~ELeSlkeEL~HfE~rl~K--~ 148 (214)
T PF06401_consen 73 QLHEKHNELKEKHREINDGYDRLRRVSHQ-GPN-SDKEFIEPKVQGLWKLAQNANFTEDELESLKEELKHFEKRLEK--H 148 (214)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSS-SS-SSSSTTHHHHHHHHCTTT--HHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-cccccccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH--H
Confidence 36789999999999999999999876665 332 2123542 22457777876521 1333222 2
Q ss_pred HHHHHHhhhhHH---HHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Q 001229 1005 KSLKIQLRDTAE---AVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMI 1068 (1119)
Q Consensus 1005 ~~l~~qlrdtae---av~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~ 1068 (1119)
+-++.||.=-++ -|.++|....--+ -.+++..+++.+.++-..|.||-..-+.-|+
T Consensus 149 ~H~~~el~~~~~k~~~ve~~g~~~~~~~--------~~e~~~~leek~Kk~~~KV~Kl~~dLe~rIs 207 (214)
T PF06401_consen 149 RHYQEELELSHEKLKHVESLGDEEHFDR--------KSEKYKTLEEKIKKLGRKVKKLHQDLESRIS 207 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSTTTHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcCcHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444433332 3557776544322 3456677788888888888888777777775
No 449
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=28.09 E-value=33 Score=43.69 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=29.3
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+.|+.+++....-..+.+.+. . +...+..|+-+|.+|||||+.-
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~-----~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVE-----M-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred cccccceeecCHHHHHHHHHHH-----H-HhCCCCCEEEECCCCcCHHHHH
Confidence 3667777765443333333322 2 3467788999999999999854
No 450
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=27.98 E-value=48 Score=42.46 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=19.8
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 689999999999999999986
No 451
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=27.90 E-value=22 Score=36.12 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=11.2
Q ss_pred eeeecccccccccc
Q 001229 167 LLSYGQTGSGKTYT 180 (1119)
Q Consensus 167 IfAYGQTGSGKTyT 180 (1119)
|+-.|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 45679999999864
No 452
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=27.82 E-value=46 Score=42.71 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.7
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|.|-||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 689999999999999999986
No 453
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.69 E-value=1.3e+03 Score=29.04 Aligned_cols=159 Identities=18% Similarity=0.284 Sum_probs=95.6
Q ss_pred hHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCc
Q 001229 895 DIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGH 974 (1119)
Q Consensus 895 ~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~ 974 (1119)
+|+..+...+.+..++ +.|-|.|++=|.-+.-+-+++..+.+....+-..-+.++.-++-|+..= +..-.
T Consensus 272 ~l~~~~~~~~~i~~~I-------d~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY---~L~~~ 341 (560)
T PF06160_consen 272 ELDEVEEENEEIEERI-------DQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSY---TLNHN 341 (560)
T ss_pred CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCch
Confidence 4444444444444433 4677888888877777888888888887777777777777777776532 33322
Q ss_pred chhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH----HhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHH
Q 001229 975 GSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA----VHAAGELLVRLKEAEQAASVAEANFSGVQQENE 1050 (1119)
Q Consensus 975 ~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea----v~aagellvrl~eaeea~~~a~~~~~~~~qe~~ 1050 (1119)
+.--++.|..+|..| ..++.+..++ ..+.-++.-+|++..+.+..-++.-..+.....
T Consensus 342 e~~~~~~l~~~l~~l------------------~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~ 403 (560)
T PF06160_consen 342 ELEIVRELEKQLKEL------------------EKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQ 403 (560)
T ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333 3344333333 345567777777777777766665555544444
Q ss_pred HHHHHHHHHH---hhhhhHHHHHHHHHhhcCCCc
Q 001229 1051 KLKKQIDKLK---RKHKMEMITMKQYLAESKLPE 1081 (1119)
Q Consensus 1051 k~~~q~~klk---~kh~~e~~t~~~~laes~lp~ 1081 (1119)
.|.+.=..-+ .+++.+|.++|.+|-.+.||+
T Consensus 404 ~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPG 437 (560)
T PF06160_consen 404 SLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPG 437 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4433322222 234567899999999999986
No 454
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=27.60 E-value=1.1e+03 Score=27.84 Aligned_cols=119 Identities=17% Similarity=0.113 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 001229 938 YADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEA 1017 (1119)
Q Consensus 938 y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaea 1017 (1119)
|.+|.++|+.|-..++..+.+.+++ .. |..-=.+.+-++|..+.. |-...+++-..++.||..--.+
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~-------~~--~d~~eL~~lk~~l~~~~~----ei~~~~~~l~e~~~~l~~l~~~ 240 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDEL-------ED--CDPTELDRAKEKLKKLLQ----EIMIKVKKLEELEEELQELESK 240 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH-------Hh--CCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444443 22 222223333333333322 3344555556666666665555
Q ss_pred HhhhhhhhhhhhhHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Q 001229 1018 VHAAGELLVRLKEAEQAAS-VAEANFSGVQQENEKLKKQIDKLKRKHKMEMIT 1069 (1119)
Q Consensus 1018 v~aagellvrl~eaeea~~-~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t 1069 (1119)
|.+.=+....++++=.++. +-++.-.---.|..+|+.+++.|.+.|.--|..
T Consensus 241 I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~~~~~ 293 (312)
T smart00787 241 IEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWKITK 293 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCeeEe
Confidence 5544333333222111111 111222223456667777777777666554443
No 455
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=27.56 E-value=35 Score=36.48 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=22.5
Q ss_pred hHHHHHHHHc-CCC--cceeeeccccccccccc
Q 001229 152 GLPLVKNALA-GYN--VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 152 ~~pLV~~vL~-GyN--~tIfAYGQTGSGKTyTM 181 (1119)
+-+=++.++. |+. ..+..+|.+|||||...
T Consensus 4 Gi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 4 GCKGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred chhHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 3456788885 554 44789999999999865
No 456
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=27.43 E-value=50 Score=42.34 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.9
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|.|-||+.-|.+|||||.|.
T Consensus 84 ~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 799999999999999999986
No 457
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=27.41 E-value=33 Score=36.95 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=21.0
Q ss_pred HHHHHHHc-CC--Ccceeeecccccccccc
Q 001229 154 PLVKNALA-GY--NVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 154 pLV~~vL~-Gy--N~tIfAYGQTGSGKTyT 180 (1119)
|-++.++. |+ +++++.+|++|||||.-
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 45677784 43 78899999999999863
No 458
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=27.37 E-value=86 Score=34.12 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=24.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 001229 1040 ANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLA 1075 (1119)
Q Consensus 1040 ~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~la 1075 (1119)
+-.+.-|.|-+.|+.+++|+ +-||.||+|.||
T Consensus 37 ~~~~LSe~Ekeelr~EL~kv----EeEI~TLrqVLa 68 (208)
T KOG4010|consen 37 EFEALSEEEKEELRTELAKV----EEEIVTLRQVLA 68 (208)
T ss_pred HHhhhcHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34455566667888888876 679999999995
No 459
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=27.35 E-value=50 Score=42.30 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.8
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 689999999999999999986
No 460
>PRK08118 topology modulation protein; Reviewed
Probab=27.32 E-value=25 Score=36.73 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=12.1
Q ss_pred eeeecccccccccc
Q 001229 167 LLSYGQTGSGKTYT 180 (1119)
Q Consensus 167 IfAYGQTGSGKTyT 180 (1119)
|+..|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999963
No 461
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=27.25 E-value=46 Score=43.17 Aligned_cols=18 Identities=44% Similarity=0.394 Sum_probs=15.7
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
.++++-+|+||+|||++.
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 367899999999999976
No 462
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=27.18 E-value=9.2e+02 Score=27.03 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=27.3
Q ss_pred HHHHHhHH-HHHHHHHHhcccC---------cchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 001229 953 RAIMEGVA-EVKRAAAKAGAKG---------HGSRFAKSVAAELSALRVERDREREFLKKE 1003 (1119)
Q Consensus 953 r~i~~gi~-~vk~aaakag~~g---------~~~~f~~~laae~s~lr~ereke~~~~~~e 1003 (1119)
..|...|. .++++..+-|+.= --..+..|+.+ ..+++|++++...+-|
T Consensus 110 ~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~---~~~A~~~~~a~~~~Ae 167 (262)
T cd03407 110 DEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNE---INAAQRQRVAAVHKAE 167 (262)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 44555544 4566666666431 12245566655 3567778887766665
No 463
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=27.15 E-value=6.6e+02 Score=27.93 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=38.7
Q ss_pred HhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001229 1002 KENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITM 1070 (1119)
Q Consensus 1002 ~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~ 1070 (1119)
.=|.--+.||+++-.++.+-.+. =+++....++.+++-++|..|.+-|..=+..|
T Consensus 148 ~LN~~Ye~QL~~as~q~~~~~~i--------------~~na~~fkeQ~~kLa~NL~sLN~VYg~ML~AM 202 (202)
T TIGR03513 148 GLNTIYEAQLKGASSHADANNEI--------------AINSSSLKEEMEKMAANLTSLNEVYGGMLTAM 202 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34666777898888887776654 34455667788888888888888777655443
No 464
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=27.00 E-value=36 Score=42.93 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 139 DSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 139 d~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.....|..+...+.. +.-.....-++..|+||||||...
T Consensus 235 ~lt~~Q~~ai~~I~~----~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 235 KLTRAQKRVVKEILQ----DLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCHHHHHHHHHHHH----HhccCCCccEEEECCCCCcHHHHH
Confidence 344445555444332 222233345789999999999865
No 465
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=26.98 E-value=48 Score=42.75 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.1
Q ss_pred HcCCCcceeeeccccccccccc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM 181 (1119)
-.|.|-||+.-|.+|||||.|.
T Consensus 87 ~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 87 VLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred hcCCCCeEEEecCCCCChhHHH
Confidence 3789999999999999999886
No 466
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=26.74 E-value=1.1e+03 Score=27.76 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=19.4
Q ss_pred HHHhhhhhhhHHHHHHHHHhhHHHHH
Q 001229 984 AELSALRVERDREREFLKKENKSLKI 1009 (1119)
Q Consensus 984 ae~s~lr~ereke~~~~~~en~~l~~ 1009 (1119)
+=+..|++|.||+.-.|.+.||.|=.
T Consensus 260 d~~~~L~ae~ekq~lllEErNKeL~n 285 (305)
T PF14915_consen 260 DIVKKLQAESEKQVLLLEERNKELIN 285 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34567888888888888888887743
No 467
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=26.68 E-value=24 Score=40.04 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=14.0
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
-|+-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788999999999875
No 468
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=26.58 E-value=2.6e+02 Score=27.72 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1049 NEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1049 ~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
.++|++++++-+..|+.+|..+...+
T Consensus 74 L~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 74 LKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666666666666666665543
No 469
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=26.47 E-value=34 Score=32.45 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=12.8
Q ss_pred hhhhhhcccceehhh
Q 001229 876 ERWTEMESEWICLTD 890 (1119)
Q Consensus 876 ~~w~e~es~wi~lt~ 890 (1119)
.+|..-|.+|++||=
T Consensus 42 lKYlDde~e~v~lss 56 (81)
T cd06396 42 IKYVDEENEEVSVNS 56 (81)
T ss_pred eEEEcCCCCEEEEEc
Confidence 578899999999973
No 470
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=26.45 E-value=2e+02 Score=33.43 Aligned_cols=129 Identities=24% Similarity=0.263 Sum_probs=67.7
Q ss_pred HHHHHHHHH----HHHhHHHHHHHHHHhcccC--cchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHh
Q 001229 946 NDLVSRHRA----IMEGVAEVKRAAAKAGAKG--HGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVH 1019 (1119)
Q Consensus 946 ~~l~~~hr~----i~~gi~~vk~aaakag~~g--~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~ 1019 (1119)
.++|+|||+ .+.-|...||+|.|--++- +=.-|+..|.+|++.- -.+|.+-++.=|.+ |++.
T Consensus 15 e~iLaRHr~E~keLq~ki~~mKk~a~k~~k~~rK~~~~~~~~le~el~qk---H~kEL~~~~~~~~~---------e~~~ 82 (302)
T KOG2606|consen 15 EEILARHRRERKELQAKITSMKKAAPKGNKKKRKELTEDIAKLEKELSQK---HKKELEKLKLINES---------EVTP 82 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhHHHHH---HHHHHHhhcccCcc---------ccCc
Confidence 789999997 5677999999998854211 2234777777777653 23555555543322 3333
Q ss_pred hhhhhhhh--------hhhHHHHH--HHH-----HHhhhhhHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHhhcCCCcc
Q 001229 1020 AAGELLVR--------LKEAEQAA--SVA-----EANFSGVQQENEKLKKQI--DKLKRKHKMEMITMKQYLAESKLPES 1082 (1119)
Q Consensus 1020 aagellvr--------l~eaeea~--~~a-----~~~~~~~~qe~~k~~~q~--~klk~kh~~e~~t~~~~laes~lp~~ 1082 (1119)
+=+.+-+= +-+-||+= +-| ++|+....-+++++..+= .++.---.+|-..+++.|++..|--.
T Consensus 83 ~e~~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~ 162 (302)
T KOG2606|consen 83 KENLIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMF 162 (302)
T ss_pred cccchhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccc
Confidence 33222111 11222111 111 112222222222222111 13333334677788999999999888
Q ss_pred cccC
Q 001229 1083 ALQP 1086 (1119)
Q Consensus 1083 ~~~~ 1086 (1119)
.|.|
T Consensus 163 ~Ip~ 166 (302)
T KOG2606|consen 163 DIPA 166 (302)
T ss_pred cCCC
Confidence 8876
No 471
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.45 E-value=1.5e+03 Score=29.07 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001229 941 LQEKYNDLVSRHRAIMEGVAEVKRAAAKAG 970 (1119)
Q Consensus 941 l~e~~~~l~~~hr~i~~gi~~vk~aaakag 970 (1119)
.+-...+|+.+-..+.+-|+++.+.-++|-
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~ 418 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIP 418 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455677777788888888888888766653
No 472
>PHA02624 large T antigen; Provisional
Probab=26.31 E-value=46 Score=42.13 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=22.9
Q ss_pred HHHHHHcCCCc--ceeeecccccccccccc
Q 001229 155 LVKNALAGYNV--SLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 155 LV~~vL~GyN~--tIfAYGQTGSGKTyTM~ 182 (1119)
++..++.|... ||+-||+.|||||+-..
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~~ 449 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLAA 449 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHH
Confidence 46677888766 99999999999998653
No 473
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=26.27 E-value=1.8e+02 Score=34.28 Aligned_cols=58 Identities=36% Similarity=0.403 Sum_probs=39.4
Q ss_pred HHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001229 984 AELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLK 1060 (1119)
Q Consensus 984 ae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk 1060 (1119)
.|.++||-|-+ -||+||..|++.| -|| |+|---+--.++-..++...+++-|=|+|++
T Consensus 32 ~e~~aLr~EN~----~LKkEN~~Lk~eV--------------erL-E~e~l~s~V~E~vet~dv~~d~i~Kimnk~R 89 (420)
T PF07407_consen 32 DENFALRMENH----SLKKENNDLKIEV--------------ERL-ENEMLRSHVCEDVETNDVIYDKIVKIMNKMR 89 (420)
T ss_pred hhhhhHHHHhH----HHHHHHHHHHHHH--------------HHH-HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 57788887544 4888998888765 244 5554433344555556778888999999873
No 474
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=26.23 E-value=2.4e+02 Score=32.52 Aligned_cols=58 Identities=29% Similarity=0.488 Sum_probs=44.4
Q ss_pred hhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhh---------------------HHHHHHHHHHHHHHHHHHHH
Q 001229 894 VDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHA---------------------RMVEHYADLQEKYNDLVSRH 952 (1119)
Q Consensus 894 ~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~gha---------------------r~~e~y~~l~e~~~~l~~~h 952 (1119)
..|.+.+...|+++.||+ +|-.||...=+-|..|-+ ..=..|-||+|||+.=++--
T Consensus 102 gQl~s~Kkqie~Leqelk---r~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveer 178 (307)
T PF10481_consen 102 GQLNSCKKQIEKLEQELK---RCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEER 178 (307)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 568899999999999995 899999876555554442 22378999999999877654
Q ss_pred HH
Q 001229 953 RA 954 (1119)
Q Consensus 953 r~ 954 (1119)
++
T Consensus 179 kr 180 (307)
T PF10481_consen 179 KR 180 (307)
T ss_pred hh
Confidence 44
No 475
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=26.22 E-value=25 Score=44.96 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=16.5
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
|+-++..|.||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 677899999999999988
No 476
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.20 E-value=1.8e+03 Score=30.12 Aligned_cols=121 Identities=15% Similarity=0.211 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHH
Q 001229 930 GHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKI 1009 (1119)
Q Consensus 930 ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~ 1009 (1119)
|-+++.=+|-+--.+|+.+..--.+.++-+.+++|++..---++ .|=|.|+.-+..+-++++.
T Consensus 235 ~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~-----------------eeLe~~~~et~~~~s~~~~ 297 (1072)
T KOG0979|consen 235 EKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKK-----------------EELESEKKETRSKISQKQR 297 (1072)
T ss_pred HHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-----------------hhHHhHHHhHHHHHHHHHH
Confidence 33444445555555555555555555555555555554433333 2223344444444444444
Q ss_pred HhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh---hhhHHHHHHHHH--hhcCCCcccc
Q 001229 1010 QLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRK---HKMEMITMKQYL--AESKLPESAL 1084 (1119)
Q Consensus 1010 qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~k---h~~e~~t~~~~l--aes~lp~~~~ 1084 (1119)
-| +||-+-+..-.+.++.++++.+++|++.+-||++ |..+|...+.-+ ++..||+-.+
T Consensus 298 ~~-----------------~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~ 360 (1072)
T KOG0979|consen 298 EL-----------------NEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETED 360 (1072)
T ss_pred HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 33 3444444444556677777777788777777764 334444444433 4444544443
No 477
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=26.05 E-value=27 Score=34.24 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=12.6
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999999853
No 478
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.01 E-value=26 Score=42.36 Aligned_cols=19 Identities=37% Similarity=0.270 Sum_probs=16.1
Q ss_pred Ccceeeecccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~ 182 (1119)
+..|...|+||+|||+|+-
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3567889999999999983
No 479
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.01 E-value=1e+02 Score=33.14 Aligned_cols=29 Identities=14% Similarity=0.309 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001229 929 LGHARMVEHYADLQEKYNDLVSRHRAIME 957 (1119)
Q Consensus 929 ~ghar~~e~y~~l~e~~~~l~~~hr~i~~ 957 (1119)
..|+.++.+|.-|.++=.-|-..+....-
T Consensus 17 ~~~~~li~ay~~L~d~~~~l~~~~~~l~~ 45 (194)
T PF08614_consen 17 KAFAELIDAYNRLADRTSLLKAENEQLQP 45 (194)
T ss_dssp -----------------------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 34566777777777766555555544443
No 480
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.96 E-value=2.2e+02 Score=34.65 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=31.1
Q ss_pred EEcCeecCCCCChHHHHHHhhHH-HHHHHHcCCC---cceeeeccccccccc
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLP-LVKNALAGYN---VSLLSYGQTGSGKTY 179 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~p-LV~~vL~GyN---~tIfAYGQTGSGKTy 179 (1119)
-..|.|-+-..--.-+-+.|+.| ++-.+|.|.- -.|+.+|+.|+|||-
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 34444444333334455667777 4567888875 358889999999983
No 481
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.93 E-value=49 Score=40.22 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=15.0
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
..|+..|++|+|||+|..
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999974
No 482
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.78 E-value=1.3e+03 Score=28.36 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=54.5
Q ss_pred hhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001229 891 ELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAG 970 (1119)
Q Consensus 891 elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag 970 (1119)
++...|...+....+++.+|..=++--..++.+|...--+-..+=-.-+|+.-.-+.|-..||.=..=.+.|=.|+-+-|
T Consensus 49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g 128 (420)
T COG4942 49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSG 128 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44445555555566666666666666666666766666666666666777777777888888777777777777777764
Q ss_pred cc
Q 001229 971 AK 972 (1119)
Q Consensus 971 ~~ 972 (1119)
..
T Consensus 129 ~~ 130 (420)
T COG4942 129 RN 130 (420)
T ss_pred CC
Confidence 43
No 483
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=25.77 E-value=8.4e+02 Score=26.05 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=44.6
Q ss_pred HHHHhHH-HHHHHHHHhcccC---------cchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhh-h
Q 001229 954 AIMEGVA-EVKRAAAKAGAKG---------HGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAA-G 1022 (1119)
Q Consensus 954 ~i~~gi~-~vk~aaakag~~g---------~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aa-g 1022 (1119)
.|.+.|. .++....+-|+.= -...+.+++.+ ...++|+++.+..+-|...-....+--|++ ++. .
T Consensus 112 ~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~---~~~A~~~~~a~i~~A~ge~~a~~~~aea~~-~~~~~ 187 (215)
T cd03403 112 EINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAK---QAEAEREKRAKIIEAEGERQAAILLAEAAK-QAAIN 187 (215)
T ss_pred HHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHccC
Confidence 3444433 3455555555541 11234445544 345677777666655555444444433333 222 2
Q ss_pred hhhhhhhhHHHHHHHHHHhh
Q 001229 1023 ELLVRLKEAEQAASVAEANF 1042 (1119)
Q Consensus 1023 ellvrl~eaeea~~~a~~~~ 1042 (1119)
.++.++|+||..-..++..+
T Consensus 188 ~~~~~~~~~e~~~~~~~~~~ 207 (215)
T cd03403 188 PAALQLRELETLEEIAKEAA 207 (215)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 67777777777666666554
No 484
>PRK08233 hypothetical protein; Provisional
Probab=25.77 E-value=27 Score=35.71 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=12.1
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|+--|++|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999865
No 485
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=25.71 E-value=1.6e+02 Score=33.28 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=22.5
Q ss_pred HHHHHhhHHHHHHhhhhHHHH---hhhhhhhhhh
Q 001229 998 EFLKKENKSLKIQLRDTAEAV---HAAGELLVRL 1028 (1119)
Q Consensus 998 ~~~~~en~~l~~qlrdtaeav---~aagellvrl 1028 (1119)
+.|.-+-.-||-||||-+.|- ||+-+=-+||
T Consensus 19 ~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L 52 (277)
T PF15030_consen 19 QQLHHQVLTLQCQLRDQGSAHRELQASRDEATRL 52 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999998874 4554433333
No 486
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.69 E-value=1e+03 Score=27.08 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHH---HHHHHHHhhHHHHHHh
Q 001229 935 VEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDR---EREFLKKENKSLKIQL 1011 (1119)
Q Consensus 935 ~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~erek---e~~~~~~en~~l~~ql 1011 (1119)
+++-..||+-+..+-.--.++-+-..+|||+-+. ..++-..+.++..+-|. +-..+..+.+.++.|+
T Consensus 6 ~~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e----------~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 6 LKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAE----------LEALNKALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001229 1012 RDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQY 1073 (1119)
Q Consensus 1012 rdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~ 1073 (1119)
.|+=++. +|+-=..+++--+...+.|++|...++.|...+-..+++|.++-+-.-..|...
T Consensus 76 ~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 76 KRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=25.69 E-value=29 Score=43.11 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=29.3
Q ss_pred eeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 001229 167 LLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQRE 215 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~ 215 (1119)
||..|+|.|||||--.-.-.. ...+---|=+-....++|++.+..
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~----aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKS----AKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhh----hccceecchHHHHHHHHHHHhhhc
Confidence 899999999999986432210 011122355666777888888753
No 488
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=25.67 E-value=49 Score=42.62 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHHHHHHHcCC------Ccceeeecccccccccc
Q 001229 144 QEDIFQVVGLPLVKNALAGY------NVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 144 QeeVY~~v~~pLV~~vL~Gy------N~tIfAYGQTGSGKTyT 180 (1119)
|+++.+.+. ..|.....|+ .++++-+|+||+|||++
T Consensus 459 Q~~ai~~l~-~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~l 500 (731)
T TIGR02639 459 QDEAIDSLV-SSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTEL 500 (731)
T ss_pred cHHHHHHHH-HHHHHHhcCCCCCCCCceeEEEECCCCccHHHH
No 489
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=25.66 E-value=25 Score=39.88 Aligned_cols=18 Identities=39% Similarity=0.422 Sum_probs=14.6
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456666999999999974
No 490
>PRK06696 uridine kinase; Validated
Probab=25.49 E-value=51 Score=35.80 Aligned_cols=29 Identities=28% Similarity=0.198 Sum_probs=19.6
Q ss_pred HHHHHHHH---cCCCcceeeeccccccccccc
Q 001229 153 LPLVKNAL---AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 153 ~pLV~~vL---~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..|.+.++ .+....|..-|.+|||||+..
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 34444444 344556778899999999864
No 491
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=25.48 E-value=2.4e+02 Score=32.27 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=25.0
Q ss_pred hhhHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHH
Q 001229 930 GHARMVEHYA--DLQEKYNDLVSRHRAIMEGVAEVK 963 (1119)
Q Consensus 930 ghar~~e~y~--~l~e~~~~l~~~hr~i~~gi~~vk 963 (1119)
|--.++..|. ..+|||..|..+|+.+.+.|+...
T Consensus 165 ~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE 200 (259)
T PF08657_consen 165 GAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLE 200 (259)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566676 788888888888888888887654
No 492
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.41 E-value=27 Score=42.01 Aligned_cols=19 Identities=42% Similarity=0.414 Sum_probs=15.7
Q ss_pred cceeeeccccccccccccC
Q 001229 165 VSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~G 183 (1119)
..|+-.|++|+|||+|+..
T Consensus 207 ~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3467889999999999854
No 493
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=25.37 E-value=26 Score=36.25 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=13.9
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|+..|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999987
No 494
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=25.29 E-value=27 Score=43.74 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=15.0
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
-..+--|+.|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 446678999999999984
No 495
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.27 E-value=39 Score=43.00 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=15.3
Q ss_pred ceeeeccccccccccccC
Q 001229 166 SLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~G 183 (1119)
.++-||++|+|||.++.-
T Consensus 112 illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKI 129 (637)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 388899999999998743
No 496
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=25.24 E-value=26 Score=36.90 Aligned_cols=15 Identities=40% Similarity=0.446 Sum_probs=12.6
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999987
No 497
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=25.09 E-value=51 Score=36.38 Aligned_cols=30 Identities=23% Similarity=0.021 Sum_probs=22.7
Q ss_pred hHHHHHHHHc--CCCcceeeeccccccccccc
Q 001229 152 GLPLVKNALA--GYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 152 ~~pLV~~vL~--GyN~tIfAYGQTGSGKTyTM 181 (1119)
+..|++.+.. .-...|.-+|..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 3455666666 56677899999999999865
No 498
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.08 E-value=1e+03 Score=26.70 Aligned_cols=129 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHHhcccCcchhhHHHHH---HHHhhhhhhhHHHHH
Q 001229 932 ARMVEHYADLQEKYNDLVSRHRAIM----------EGVAEVKRAAAKAGAKGHGSRFAKSVA---AELSALRVERDRERE 998 (1119)
Q Consensus 932 ar~~e~y~~l~e~~~~l~~~hr~i~----------~gi~~vk~aaakag~~g~~~~f~~~la---ae~s~lr~ereke~~ 998 (1119)
+-|+-.=|.+|+.|-.-|.+.-+-- .+...|+...-+-+.-. ..|++.|. .+|..+..+-.+.|+
T Consensus 25 ~~f~keRa~IEe~Yak~L~kLakk~~~~~~~gt~~~~w~~i~~~~e~~a~~H--~~l~~~L~~~~~~l~~~~~~~~k~rK 102 (261)
T cd07648 25 ADFLRERATIEETYSKALNKLAKQASNSSQLGTFAPLWLVLRVSTEKLSELH--LQLVQKLQELIKDVQKYGEEQHKKHK 102 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHH------HHHHHHHHhhhhhHHHHHHH
Q 001229 999 FLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKL------KKQIDKLKRKHKMEMITMKQ 1072 (1119)
Q Consensus 999 ~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~------~~q~~klk~kh~~e~~t~~~ 1072 (1119)
-+++ .+....++.-.+.....++.-|++++..+..|.+++ .+++||++.|.+.=-...++
T Consensus 103 ~~k~--------------~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~~ 168 (261)
T cd07648 103 KVKE--------------EESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQDEYKA 168 (261)
T ss_pred HHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhh
Q 001229 1073 YLAE 1076 (1119)
Q Consensus 1073 ~lae 1076 (1119)
.|..
T Consensus 169 ~v~~ 172 (261)
T cd07648 169 LVEK 172 (261)
T ss_pred HHHH
No 499
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=24.96 E-value=29 Score=30.85 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=0.0
Q ss_pred eeeecccccccccc
Q 001229 167 LLSYGQTGSGKTYT 180 (1119)
Q Consensus 167 IfAYGQTGSGKTyT 180 (1119)
++.+|..|+|||++
T Consensus 2 ~~~~g~~G~Gktt~ 15 (99)
T cd01983 2 IVVTGKGGVGKTTL 15 (99)
T ss_pred EEEECCCCCCHHHH
No 500
>PRK01172 ski2-like helicase; Provisional
Probab=24.94 E-value=43 Score=42.45 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCcceeeecccccccc
Q 001229 153 LPLVKNALAGYNVSLLSYGQTGSGKT 178 (1119)
Q Consensus 153 ~pLV~~vL~GyN~tIfAYGQTGSGKT 178 (1119)
..++..+..|-| ++..++||||||
T Consensus 28 ~~ai~~l~~~~n--vlv~apTGSGKT 51 (674)
T PRK01172 28 RMAIEQLRKGEN--VIVSVPTAAGKT 51 (674)
T ss_pred HHHHHHHhcCCc--EEEECCCCchHH
Done!