Query 001229
Match_columns 1119
No_of_seqs 438 out of 2000
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 3.6E-88 1.2E-92 765.6 26.1 351 92-464 8-363 (365)
2 3cob_A Kinesin heavy chain-lik 100.0 5.2E-87 1.8E-91 756.8 27.7 336 93-461 3-348 (369)
3 2owm_A Nckin3-434, related to 100.0 1.3E-86 4.6E-91 768.8 28.7 335 92-441 35-422 (443)
4 1t5c_A CENP-E protein, centrom 100.0 3.1E-86 1.1E-90 746.1 30.1 332 94-445 3-341 (349)
5 3bfn_A Kinesin-like protein KI 100.0 1.5E-86 5.2E-91 756.2 26.8 347 92-461 18-373 (388)
6 1goj_A Kinesin, kinesin heavy 100.0 7.7E-86 2.6E-90 744.4 30.4 331 94-443 5-341 (355)
7 2vvg_A Kinesin-2; motor protei 100.0 4.6E-86 1.6E-90 744.8 28.4 329 93-444 2-347 (350)
8 3b6u_A Kinesin-like protein KI 100.0 3.5E-86 1.2E-90 750.4 24.5 335 92-444 18-365 (372)
9 2zfi_A Kinesin-like protein KI 100.0 1.2E-85 4.1E-90 745.6 26.9 334 94-440 3-362 (366)
10 1bg2_A Kinesin; motor protein, 100.0 1.9E-85 6.4E-90 733.7 27.0 320 92-432 4-325 (325)
11 1x88_A Kinesin-like protein KI 100.0 1.6E-85 5.5E-90 742.9 21.4 336 92-440 5-358 (359)
12 2wbe_C Bipolar kinesin KRP-130 100.0 8.3E-85 2.8E-89 740.2 24.8 338 92-442 20-371 (373)
13 3lre_A Kinesin-like protein KI 100.0 5E-84 1.7E-88 729.8 29.6 322 92-432 7-355 (355)
14 4a14_A Kinesin, kinesin-like p 100.0 8.7E-84 3E-88 725.3 26.9 330 90-430 6-344 (344)
15 3gbj_A KIF13B protein; kinesin 100.0 2.6E-83 9E-88 723.7 27.5 322 95-431 1-349 (354)
16 2h58_A Kinesin-like protein KI 100.0 1.3E-82 4.4E-87 712.2 28.7 315 94-433 3-329 (330)
17 3t0q_A AGR253WP; kinesin, alph 100.0 2.5E-82 8.6E-87 714.6 27.6 320 94-436 4-348 (349)
18 1f9v_A Kinesin-like protein KA 100.0 2.4E-82 8.3E-87 714.2 26.3 321 94-437 2-346 (347)
19 3nwn_A Kinesin-like protein KI 100.0 1.3E-82 4.5E-87 718.8 22.1 319 93-432 22-359 (359)
20 2rep_A Kinesin-like protein KI 100.0 6.8E-82 2.3E-86 716.5 26.7 320 93-432 20-376 (376)
21 2heh_A KIF2C protein; kinesin, 100.0 9.5E-82 3.3E-86 716.6 26.3 320 93-435 49-385 (387)
22 1ry6_A Internal kinesin; kines 100.0 1.2E-81 4.1E-86 711.2 26.1 322 96-440 1-339 (360)
23 1v8k_A Kinesin-like protein KI 100.0 1.9E-81 6.5E-86 718.2 25.9 322 93-437 69-407 (410)
24 2nr8_A Kinesin-like protein KI 100.0 9.3E-82 3.2E-86 711.6 22.0 320 92-432 20-358 (358)
25 4etp_A Kinesin-like protein KA 100.0 8.3E-81 2.9E-85 713.8 27.5 321 94-437 58-402 (403)
26 3dc4_A Kinesin-like protein NO 100.0 1.2E-80 4E-85 699.4 25.9 318 92-437 19-340 (344)
27 3u06_A Protein claret segregat 100.0 2.5E-80 8.4E-85 711.0 26.3 320 94-441 58-392 (412)
28 4h1g_A Maltose binding protein 100.0 7.2E-76 2.5E-80 715.3 29.2 315 94-433 373-712 (715)
29 2kin_B Kinesin; motor protein, 99.9 7.5E-29 2.6E-33 233.7 5.6 88 354-444 1-88 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 7.7E-28 2.6E-32 233.0 8.2 84 358-444 1-84 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 3.8E-23 1.3E-27 224.6 6.4 261 94-437 23-294 (298)
32 3ec2_A DNA replication protein 92.3 0.025 8.6E-07 56.4 0.0 51 131-182 6-56 (180)
33 2w58_A DNAI, primosome compone 91.1 0.059 2E-06 54.5 1.2 51 131-182 21-72 (202)
34 2qgz_A Helicase loader, putati 89.2 0.1 3.4E-06 57.6 1.2 52 131-183 120-171 (308)
35 3na7_A HP0958; flagellar bioge 87.3 35 0.0012 36.7 21.4 155 931-1090 41-199 (256)
36 3g67_A Methyl-accepting chemot 86.8 34 0.0012 36.1 25.2 111 915-1028 39-163 (213)
37 1i84_S Smooth muscle myosin he 86.6 1.4 4.8E-05 57.2 9.5 21 161-181 166-186 (1184)
38 1c1g_A Tropomyosin; contractIl 86.2 31 0.0011 35.0 24.4 12 1063-1074 270-281 (284)
39 2r62_A Cell division protease 85.1 0.45 1.5E-05 50.1 3.3 51 130-181 6-61 (268)
40 2dfs_A Myosin-5A; myosin-V, in 84.5 4.6 0.00016 52.1 12.5 36 1039-1074 1022-1061(1080)
41 3ol1_A Vimentin; structural ge 83.9 12 0.00041 36.1 12.3 47 1024-1073 70-116 (119)
42 3t15_A Ribulose bisphosphate c 83.1 0.4 1.4E-05 52.2 1.9 48 134-181 2-53 (293)
43 2bjv_A PSP operon transcriptio 82.7 0.42 1.4E-05 50.5 1.8 45 131-181 2-46 (265)
44 1jbk_A CLPB protein; beta barr 82.4 0.56 1.9E-05 45.4 2.4 28 154-181 33-60 (195)
45 1i84_S Smooth muscle myosin he 82.2 4.9 0.00017 52.3 11.6 24 287-310 232-255 (1184)
46 1g8p_A Magnesium-chelatase 38 81.4 0.52 1.8E-05 51.3 1.9 44 130-181 19-62 (350)
47 2p65_A Hypothetical protein PF 81.2 0.62 2.1E-05 45.2 2.2 28 154-181 33-60 (187)
48 3bos_A Putative DNA replicatio 81.1 0.65 2.2E-05 47.1 2.4 44 132-181 25-69 (242)
49 1l8q_A Chromosomal replication 80.8 0.72 2.5E-05 50.2 2.8 49 130-182 6-55 (324)
50 3vfd_A Spastin; ATPase, microt 80.7 0.21 7.1E-06 56.4 -1.6 53 129-181 109-165 (389)
51 3te6_A Regulatory protein SIR3 80.0 0.64 2.2E-05 52.0 2.1 25 157-181 38-62 (318)
52 3oja_B Anopheles plasmodium-re 79.8 20 0.00068 42.3 14.9 19 1043-1061 561-579 (597)
53 3h4m_A Proteasome-activating n 78.8 0.49 1.7E-05 50.2 0.6 52 130-181 12-68 (285)
54 1ixz_A ATP-dependent metallopr 78.7 0.42 1.4E-05 50.2 0.1 51 130-181 11-66 (254)
55 2dfs_A Myosin-5A; myosin-V, in 78.4 44 0.0015 43.2 18.3 21 161-181 153-173 (1080)
56 3cf0_A Transitional endoplasmi 78.2 0.69 2.4E-05 50.3 1.6 52 130-181 10-66 (301)
57 3vkg_A Dynein heavy chain, cyt 77.0 85 0.0029 45.2 21.5 82 978-1062 1984-2071(3245)
58 3uk6_A RUVB-like 2; hexameric 76.5 1.1 3.7E-05 49.3 2.6 47 131-182 40-88 (368)
59 2gxq_A Heat resistant RNA depe 74.1 1.2 4E-05 44.7 1.9 25 155-181 31-55 (207)
60 3vkg_A Dynein heavy chain, cyt 74.1 51 0.0018 47.3 18.2 133 933-1066 1899-2054(3245)
61 3okq_A BUD site selection prot 73.7 22 0.00076 35.5 10.7 73 930-1003 8-80 (141)
62 1qde_A EIF4A, translation init 73.7 1.3 4.5E-05 45.1 2.1 24 155-180 44-67 (224)
63 1vec_A ATP-dependent RNA helic 73.6 1.3 4.6E-05 44.3 2.2 25 155-181 33-57 (206)
64 3b9p_A CG5977-PA, isoform A; A 73.6 0.76 2.6E-05 49.2 0.4 52 130-181 16-71 (297)
65 2chg_A Replication factor C sm 73.4 1.6 5.5E-05 43.1 2.7 21 161-181 35-55 (226)
66 1iy2_A ATP-dependent metallopr 72.4 0.74 2.5E-05 49.2 -0.1 51 130-181 35-90 (278)
67 2z4s_A Chromosomal replication 72.0 1.6 5.6E-05 50.4 2.6 49 130-182 100-148 (440)
68 3bor_A Human initiation factor 71.9 1.2 4E-05 46.4 1.3 25 155-181 60-84 (237)
69 2v1u_A Cell division control p 71.6 0.91 3.1E-05 49.6 0.4 39 142-181 22-61 (387)
70 1hjb_A Ccaat/enhancer binding 71.0 4.6 0.00016 37.3 4.8 43 1038-1086 41-83 (87)
71 2kjq_A DNAA-related protein; s 70.6 1.3 4.6E-05 43.4 1.4 18 165-182 37-54 (149)
72 3d8b_A Fidgetin-like protein 1 70.4 0.87 3E-05 50.9 -0.1 51 131-181 80-134 (357)
73 3b6e_A Interferon-induced heli 70.3 1.2 4E-05 44.7 0.9 24 157-182 43-66 (216)
74 4b4t_M 26S protease regulatory 70.1 3.7 0.00013 47.8 5.1 52 130-181 176-232 (434)
75 1d2n_A N-ethylmaleimide-sensit 70.1 2.1 7.1E-05 45.4 2.8 21 161-181 61-81 (272)
76 2qz4_A Paraplegin; AAA+, SPG7, 69.5 0.75 2.6E-05 47.9 -0.8 19 163-181 38-56 (262)
77 4b4t_K 26S protease regulatory 69.1 6.3 0.00021 45.8 6.7 85 131-215 168-264 (428)
78 3dkp_A Probable ATP-dependent 68.6 2 6.7E-05 44.6 2.1 25 155-181 59-83 (245)
79 2pl3_A Probable ATP-dependent 68.1 1.9 6.5E-05 44.4 1.9 25 155-181 55-79 (236)
80 1xwi_A SKD1 protein; VPS4B, AA 67.7 1.3 4.4E-05 48.9 0.6 51 131-181 8-62 (322)
81 1t6n_A Probable ATP-dependent 67.1 2.1 7E-05 43.6 1.9 25 155-181 44-68 (220)
82 4b4t_L 26S protease subunit RP 67.1 2.9 9.9E-05 48.7 3.3 52 130-181 176-232 (437)
83 1fnn_A CDC6P, cell division co 67.1 3.1 0.00011 45.6 3.5 37 144-181 22-61 (389)
84 1p9r_A General secretion pathw 66.3 2.1 7.1E-05 49.5 1.9 29 154-182 157-185 (418)
85 3zx6_A HAMP, methyl-accepting 65.9 1.7E+02 0.0057 32.5 21.7 117 965-1084 172-309 (341)
86 3ly5_A ATP-dependent RNA helic 65.3 2.2 7.4E-05 45.3 1.7 25 155-181 84-108 (262)
87 3na7_A HP0958; flagellar bioge 65.2 1.5E+02 0.0051 31.7 17.0 145 935-1085 31-179 (256)
88 1sxj_C Activator 1 40 kDa subu 64.8 2.9 0.0001 45.8 2.7 42 133-182 23-64 (340)
89 1lv7_A FTSH; alpha/beta domain 64.7 1.1 3.8E-05 47.0 -0.7 47 130-181 7-62 (257)
90 1wrb_A DJVLGB; RNA helicase, D 64.7 2.4 8.3E-05 44.2 1.9 24 156-181 54-77 (253)
91 2x8a_A Nuclear valosin-contain 64.4 1.1 3.7E-05 48.5 -0.8 51 131-181 6-61 (274)
92 3eie_A Vacuolar protein sortin 64.0 1.8 6.1E-05 47.4 0.8 52 130-181 13-68 (322)
93 3s84_A Apolipoprotein A-IV; fo 63.6 1.7E+02 0.0059 31.9 19.3 126 931-1074 105-236 (273)
94 3jvv_A Twitching mobility prot 63.4 2.3 7.9E-05 48.0 1.6 28 155-182 114-141 (356)
95 3syl_A Protein CBBX; photosynt 63.2 2.5 8.5E-05 45.2 1.7 19 163-181 66-84 (309)
96 3iuy_A Probable ATP-dependent 62.9 2.6 8.7E-05 43.2 1.7 25 155-181 50-74 (228)
97 1q0u_A Bstdead; DEAD protein, 62.7 2.2 7.6E-05 43.5 1.1 25 155-181 34-58 (219)
98 3eiq_A Eukaryotic initiation f 62.4 3 0.0001 46.0 2.2 25 155-181 70-94 (414)
99 3haj_A Human pacsin2 F-BAR; pa 62.0 2E+02 0.0068 33.5 17.6 43 994-1036 128-171 (486)
100 3fmo_B ATP-dependent RNA helic 61.7 3.1 0.00011 45.3 2.2 27 155-181 122-148 (300)
101 2oxc_A Probable ATP-dependent 61.6 3.1 0.00011 42.9 2.0 23 156-180 55-77 (230)
102 1gk4_A Vimentin; intermediate 61.6 61 0.0021 29.3 10.3 70 999-1074 5-77 (84)
103 3oja_A Leucine-rich immune mol 61.4 1.2E+02 0.004 35.0 15.4 63 977-1070 410-472 (487)
104 2qby_B CDC6 homolog 3, cell di 61.0 2.7 9.3E-05 46.1 1.6 37 144-181 25-62 (384)
105 2qby_A CDC6 homolog 1, cell di 60.9 2 6.9E-05 46.7 0.5 20 162-181 43-62 (386)
106 3fe2_A Probable ATP-dependent 60.8 3.1 0.00011 43.2 1.9 24 156-181 60-83 (242)
107 3tnu_B Keratin, type II cytosk 60.7 53 0.0018 31.8 10.4 81 977-1074 43-126 (129)
108 2c9o_A RUVB-like 1; hexameric 60.5 4.1 0.00014 47.0 3.0 46 131-181 33-80 (456)
109 3llm_A ATP-dependent RNA helic 60.5 3 0.0001 43.4 1.7 26 154-181 68-93 (235)
110 2qp9_X Vacuolar protein sortin 60.4 2.2 7.4E-05 47.7 0.6 52 130-181 46-101 (355)
111 3ber_A Probable ATP-dependent 60.3 3.3 0.00011 43.6 2.0 25 155-181 73-97 (249)
112 3tnu_A Keratin, type I cytoske 60.0 63 0.0022 31.4 10.9 80 978-1074 46-128 (131)
113 4etp_B Spindle POLE BODY-assoc 59.0 60 0.002 36.5 11.6 121 94-247 58-183 (333)
114 3pey_A ATP-dependent RNA helic 58.9 3.7 0.00013 44.7 2.1 27 155-181 35-61 (395)
115 3fht_A ATP-dependent RNA helic 57.5 4.3 0.00015 44.6 2.4 28 154-181 54-81 (412)
116 2j0s_A ATP-dependent RNA helic 57.3 3.8 0.00013 45.4 1.9 25 155-181 67-91 (410)
117 1x8y_A Lamin A/C; structural p 56.7 45 0.0015 30.4 8.6 70 999-1074 7-79 (86)
118 1njg_A DNA polymerase III subu 56.6 5.1 0.00018 39.8 2.6 17 165-181 46-62 (250)
119 2zan_A Vacuolar protein sortin 56.5 2.3 7.8E-05 49.1 -0.0 52 130-181 129-184 (444)
120 3mov_A Lamin-B1; LMNB1, B-type 56.0 25 0.00086 32.8 6.9 76 993-1074 10-88 (95)
121 1ofh_A ATP-dependent HSL prote 55.9 5.1 0.00017 42.4 2.6 18 164-181 50-67 (310)
122 1wt6_A Myotonin-protein kinase 55.8 23 0.00078 32.3 6.2 21 1040-1060 52-72 (81)
123 1s2m_A Putative ATP-dependent 55.7 4 0.00014 44.9 1.8 25 155-181 51-75 (400)
124 2eyu_A Twitching motility prot 55.6 3.3 0.00011 44.5 1.1 19 163-181 24-42 (261)
125 3fmp_B ATP-dependent RNA helic 55.3 4.2 0.00014 46.5 1.9 26 155-180 122-147 (479)
126 2z0m_A 337AA long hypothetical 55.2 4.4 0.00015 43.1 1.9 26 155-182 24-49 (337)
127 3pfi_A Holliday junction ATP-d 55.1 6.5 0.00022 42.7 3.3 44 133-181 27-72 (338)
128 3hu3_A Transitional endoplasmi 54.5 3.6 0.00012 48.4 1.2 50 132-181 201-255 (489)
129 3co5_A Putative two-component 53.4 5.8 0.0002 38.2 2.3 21 163-183 26-46 (143)
130 4b4t_J 26S protease regulatory 53.2 4.4 0.00015 46.8 1.6 51 131-181 144-199 (405)
131 1sxj_D Activator 1 41 kDa subu 53.1 4.7 0.00016 43.7 1.7 26 156-181 50-75 (353)
132 2r44_A Uncharacterized protein 53.0 5.7 0.00019 43.2 2.4 34 143-182 31-64 (331)
133 1u0j_A DNA replication protein 52.9 5.9 0.0002 43.3 2.4 29 154-182 91-122 (267)
134 2fz4_A DNA repair protein RAD2 52.6 4.4 0.00015 42.6 1.4 25 157-183 103-127 (237)
135 3n70_A Transport activator; si 52.5 4.4 0.00015 39.0 1.3 21 161-181 21-41 (145)
136 1iqp_A RFCS; clamp loader, ext 52.3 6 0.00021 42.2 2.4 41 133-181 23-63 (327)
137 2i4i_A ATP-dependent RNA helic 51.6 5.3 0.00018 44.1 1.9 24 156-181 46-69 (417)
138 1hqc_A RUVB; extended AAA-ATPa 51.5 9.9 0.00034 40.7 4.0 45 132-181 9-55 (324)
139 1tue_A Replication protein E1; 51.5 4.7 0.00016 42.8 1.3 29 155-183 47-77 (212)
140 3h1t_A Type I site-specific re 51.4 5.4 0.00019 47.1 2.0 25 157-182 192-216 (590)
141 4b4t_I 26S protease regulatory 51.2 14 0.00047 43.2 5.2 51 131-181 178-233 (437)
142 3oiy_A Reverse gyrase helicase 50.4 5.1 0.00017 44.8 1.5 24 155-180 29-52 (414)
143 2oap_1 GSPE-2, type II secreti 50.1 6.6 0.00023 46.5 2.4 20 161-182 259-278 (511)
144 4fcw_A Chaperone protein CLPB; 50.0 4.9 0.00017 42.9 1.2 38 143-181 21-64 (311)
145 2oa5_A Hypothetical protein BQ 49.9 14 0.00048 35.4 4.1 24 979-1013 10-33 (110)
146 3pxg_A Negative regulator of g 49.5 7.6 0.00026 45.1 2.8 43 133-183 178-220 (468)
147 1fuu_A Yeast initiation factor 48.6 5.1 0.00018 43.7 1.2 25 155-181 51-75 (394)
148 4b4t_H 26S protease regulatory 48.5 3.5 0.00012 48.5 -0.2 51 131-181 205-260 (467)
149 3jsv_C NF-kappa-B essential mo 48.0 34 0.0012 32.0 6.2 44 1022-1073 5-48 (94)
150 1xti_A Probable ATP-dependent 47.3 6.5 0.00022 42.9 1.7 25 155-181 38-62 (391)
151 1nkp_B MAX protein, MYC proto- 47.0 18 0.00063 32.4 4.3 59 950-1012 10-78 (83)
152 2ewv_A Twitching motility prot 46.6 4.4 0.00015 45.9 0.2 26 156-181 128-153 (372)
153 2chq_A Replication factor C sm 46.6 5.9 0.0002 42.1 1.2 21 161-181 35-55 (319)
154 1in4_A RUVB, holliday junction 46.4 11 0.00037 41.6 3.3 17 165-181 52-68 (334)
155 1w5s_A Origin recognition comp 46.3 7.7 0.00026 42.9 2.1 25 157-181 40-69 (412)
156 1rif_A DAR protein, DNA helica 46.1 4.7 0.00016 42.9 0.3 24 157-182 123-146 (282)
157 3fho_A ATP-dependent RNA helic 45.6 7.9 0.00027 45.1 2.2 26 156-181 150-175 (508)
158 2v4h_A NF-kappa-B essential mo 45.4 32 0.0011 33.0 5.8 33 1022-1054 27-59 (110)
159 3pvs_A Replication-associated 45.4 7.9 0.00027 44.9 2.1 43 134-181 25-67 (447)
160 1gvn_B Zeta; postsegregational 45.2 13 0.00043 40.4 3.6 34 148-181 12-50 (287)
161 1qvr_A CLPB protein; coiled co 45.2 6.9 0.00024 48.9 1.7 44 132-183 167-210 (854)
162 3a7p_A Autophagy protein 16; c 45.2 1.6E+02 0.0056 29.7 11.1 65 888-952 69-133 (152)
163 1hv8_A Putative ATP-dependent 45.2 7.4 0.00025 41.8 1.7 25 156-181 37-61 (367)
164 1gu4_A CAAT/enhancer binding p 45.0 16 0.00054 33.1 3.5 34 1038-1075 41-74 (78)
165 2db3_A ATP-dependent RNA helic 44.4 8 0.00027 44.0 1.9 24 156-181 87-110 (434)
166 2ce7_A Cell division protein F 43.5 5.3 0.00018 47.0 0.3 47 130-181 11-66 (476)
167 2v71_A Nuclear distribution pr 43.2 3.1E+02 0.011 28.6 14.0 130 868-1014 44-173 (189)
168 3i00_A HIP-I, huntingtin-inter 43.1 14 0.00049 35.9 3.2 62 979-1045 49-111 (120)
169 1n0w_A DNA repair protein RAD5 42.7 6.6 0.00023 40.1 0.8 31 152-182 9-42 (243)
170 3u61_B DNA polymerase accessor 42.6 13 0.00043 40.2 3.0 22 161-182 44-66 (324)
171 4a2p_A RIG-I, retinoic acid in 42.6 9.4 0.00032 43.8 2.1 25 155-181 15-39 (556)
172 3q8t_A Beclin-1; autophagy, AT 42.6 83 0.0028 29.3 8.1 31 981-1011 36-70 (96)
173 3i5x_A ATP-dependent RNA helic 42.1 9.3 0.00032 44.6 2.0 26 155-180 102-127 (563)
174 1sxj_B Activator 1 37 kDa subu 42.1 10 0.00035 40.3 2.2 22 160-181 38-59 (323)
175 4b3f_X DNA-binding protein smu 41.9 8.3 0.00028 46.5 1.6 27 155-182 197-223 (646)
176 2dhr_A FTSH; AAA+ protein, hex 41.8 5.1 0.00018 47.4 -0.2 34 781-814 425-458 (499)
177 3mq7_A Bone marrow stromal ant 41.7 1.7E+02 0.0058 28.4 10.1 71 989-1074 17-87 (121)
178 3lay_A Zinc resistance-associa 41.3 1.3E+02 0.0043 31.0 10.0 29 975-1003 111-139 (175)
179 1wlq_A Geminin; coiled-coil; 2 41.1 33 0.0011 31.4 5.0 29 1042-1074 33-61 (83)
180 3tbk_A RIG-I helicase domain; 40.6 11 0.00036 43.2 2.1 25 155-181 12-36 (555)
181 1jr3_A DNA polymerase III subu 40.6 15 0.00052 40.0 3.3 19 164-182 38-56 (373)
182 1w36_D RECD, exodeoxyribonucle 40.1 9.5 0.00032 45.9 1.7 19 164-182 164-182 (608)
183 2v1x_A ATP-dependent DNA helic 40.1 12 0.00042 44.8 2.7 25 155-181 52-76 (591)
184 1um8_A ATP-dependent CLP prote 40.0 11 0.00037 41.9 2.1 18 164-181 72-89 (376)
185 4gl2_A Interferon-induced heli 39.8 10 0.00034 45.5 1.8 25 155-181 15-39 (699)
186 1wp9_A ATP-dependent RNA helic 39.7 9.8 0.00034 42.0 1.7 25 155-182 17-41 (494)
187 2fwr_A DNA repair protein RAD2 39.2 9.3 0.00032 43.5 1.4 25 156-182 102-126 (472)
188 1c4o_A DNA nucleotide excision 39.1 15 0.0005 44.8 3.2 46 132-183 2-47 (664)
189 2cvh_A DNA repair and recombin 38.0 8.8 0.0003 38.5 0.9 30 153-182 6-38 (220)
190 1ojl_A Transcriptional regulat 38.0 14 0.00048 40.3 2.5 20 162-181 23-42 (304)
191 2p5t_B PEZT; postsegregational 38.0 19 0.00065 37.9 3.5 34 148-181 11-49 (253)
192 2w0m_A SSO2452; RECA, SSPF, un 37.2 8.1 0.00028 38.8 0.4 29 153-181 9-40 (235)
193 2eqb_B RAB guanine nucleotide 37.1 2.7E+02 0.0092 26.2 13.1 21 994-1014 75-95 (97)
194 3k29_A Putative uncharacterize 37.1 3.6E+02 0.012 27.6 16.3 20 972-991 66-85 (169)
195 3oja_A Leucine-rich immune mol 36.6 3.7E+02 0.013 30.7 14.3 34 983-1020 441-474 (487)
196 4ag6_A VIRB4 ATPase, type IV s 36.5 8.8 0.0003 43.0 0.6 18 164-181 35-52 (392)
197 3hws_A ATP-dependent CLP prote 36.0 17 0.00058 40.2 2.8 18 164-181 51-68 (363)
198 3ol1_A Vimentin; structural ge 36.0 2.6E+02 0.009 26.7 10.8 60 889-969 22-81 (119)
199 3hd7_B Syntaxin-1A; membrane p 35.7 1.6E+02 0.0056 27.6 9.2 61 991-1054 17-77 (109)
200 1sxj_E Activator 1 40 kDa subu 35.3 10 0.00036 41.2 1.0 16 167-182 39-54 (354)
201 1e9r_A Conjugal transfer prote 35.0 9 0.00031 43.5 0.4 19 163-181 52-70 (437)
202 2gk6_A Regulator of nonsense t 34.5 13 0.00046 44.6 1.8 19 165-183 196-214 (624)
203 2ykg_A Probable ATP-dependent 34.5 15 0.00051 44.0 2.1 25 155-181 21-45 (696)
204 1ci6_A Transcription factor AT 34.4 52 0.0018 28.3 5.0 34 1039-1076 29-62 (63)
205 4a74_A DNA repair and recombin 34.4 10 0.00035 38.3 0.6 29 153-181 11-42 (231)
206 1uii_A Geminin; human, DNA rep 34.2 41 0.0014 30.8 4.4 37 1037-1077 33-72 (83)
207 3sqw_A ATP-dependent RNA helic 34.2 15 0.0005 43.4 2.0 27 154-180 50-76 (579)
208 1f5n_A Interferon-induced guan 34.1 2.5E+02 0.0086 33.9 12.6 21 161-181 35-55 (592)
209 1rz3_A Hypothetical protein rb 34.0 18 0.0006 36.6 2.3 29 153-181 8-39 (201)
210 3lfu_A DNA helicase II; SF1 he 33.7 13 0.00044 44.2 1.4 22 162-183 20-41 (647)
211 3upu_A ATP-dependent DNA helic 33.7 17 0.00059 41.8 2.4 36 141-181 27-62 (459)
212 3b85_A Phosphate starvation-in 33.7 15 0.0005 38.2 1.7 26 154-181 14-39 (208)
213 1gm5_A RECG; helicase, replica 33.4 15 0.0005 45.9 1.9 24 158-181 383-406 (780)
214 2e7s_A RAB guanine nucleotide 33.1 1.9E+02 0.0066 28.7 9.3 96 929-1057 18-113 (135)
215 3c8u_A Fructokinase; YP_612366 32.9 16 0.00054 37.1 1.8 28 154-181 10-39 (208)
216 2i1j_A Moesin; FERM, coiled-co 32.8 31 0.0011 41.5 4.5 84 989-1072 329-426 (575)
217 3lw7_A Adenylate kinase relate 32.6 11 0.00038 35.8 0.6 16 166-181 3-18 (179)
218 4gp7_A Metallophosphoesterase; 32.5 10 0.00035 37.6 0.2 17 166-182 11-27 (171)
219 3pxi_A Negative regulator of g 31.9 21 0.00072 43.8 3.0 16 166-181 523-538 (758)
220 3s9g_A Protein hexim1; cyclin 31.9 2E+02 0.007 27.1 8.7 52 929-993 30-81 (104)
221 3nbx_X ATPase RAVA; AAA+ ATPas 31.9 18 0.00061 42.8 2.2 27 155-183 34-60 (500)
222 2fxo_A Myosin heavy chain, car 31.3 3.6E+02 0.012 25.9 16.5 77 994-1074 40-120 (129)
223 3o0z_A RHO-associated protein 31.2 4.5E+02 0.015 27.0 17.2 137 918-1071 16-160 (168)
224 3a00_A Guanylate kinase, GMP k 31.0 13 0.00043 37.2 0.7 15 167-181 4-18 (186)
225 3b9q_A Chloroplast SRP recepto 31.0 23 0.00079 38.9 2.8 16 166-181 102-117 (302)
226 2oca_A DAR protein, ATP-depend 30.9 13 0.00046 42.6 1.0 34 139-182 113-146 (510)
227 1go4_E MAD1 (mitotic arrest de 30.8 2.1E+02 0.0072 27.0 8.8 70 444-527 12-92 (100)
228 2dr3_A UPF0273 protein PH0284; 30.6 15 0.0005 37.5 1.1 28 154-181 10-40 (247)
229 3aco_A Pacsin2, protein kinase 30.6 5.7E+02 0.02 28.0 15.4 25 995-1019 136-160 (350)
230 3tr0_A Guanylate kinase, GMP k 30.6 12 0.0004 37.3 0.3 16 166-181 9-24 (205)
231 1oyw_A RECQ helicase, ATP-depe 30.5 14 0.00046 43.6 0.9 26 154-181 32-57 (523)
232 1gmj_A ATPase inhibitor; coile 30.5 2.5E+02 0.0085 25.8 8.9 28 1036-1063 54-81 (84)
233 3cf2_A TER ATPase, transitiona 30.5 21 0.00072 44.7 2.6 51 131-181 200-255 (806)
234 2r8r_A Sensor protein; KDPD, P 30.3 11 0.00039 40.2 0.2 19 165-183 7-25 (228)
235 3k29_A Putative uncharacterize 30.1 4.7E+02 0.016 26.8 12.7 63 1008-1071 57-137 (169)
236 2jee_A YIIU; FTSZ, septum, coi 29.9 3.1E+02 0.011 25.0 9.4 65 898-962 17-81 (81)
237 3tau_A Guanylate kinase, GMP k 29.5 14 0.00048 37.6 0.7 16 166-181 10-25 (208)
238 1r6b_X CLPA protein; AAA+, N-t 29.3 25 0.00086 42.9 3.0 17 165-181 489-505 (758)
239 1go4_E MAD1 (mitotic arrest de 29.3 2.1E+02 0.0072 27.0 8.5 78 936-1016 12-96 (100)
240 3e70_C DPA, signal recognition 29.0 24 0.00083 39.3 2.5 17 165-181 130-146 (328)
241 4a2q_A RIG-I, retinoic acid in 28.9 19 0.00066 44.3 1.9 25 155-181 256-280 (797)
242 3pxi_A Negative regulator of g 28.9 22 0.00075 43.6 2.4 44 132-183 177-220 (758)
243 1kgd_A CASK, peripheral plasma 28.8 13 0.00045 36.9 0.3 16 166-181 7-22 (180)
244 4a2w_A RIG-I, retinoic acid in 28.5 20 0.00067 45.4 1.9 25 156-182 257-281 (936)
245 1r6b_X CLPA protein; AAA+, N-t 28.4 20 0.00069 43.8 1.9 43 133-183 184-226 (758)
246 1lvg_A Guanylate kinase, GMP k 28.3 14 0.00047 37.5 0.4 16 166-181 6-21 (198)
247 1sxj_A Activator 1 95 kDa subu 28.3 21 0.00072 41.8 2.0 17 165-181 78-94 (516)
248 2nps_B Syntaxin 13, vesicle-as 28.3 2.1E+02 0.0073 24.7 8.0 61 991-1054 2-62 (71)
249 3ts9_A Interferon-induced heli 28.3 56 0.0019 32.5 4.7 50 907-958 51-103 (138)
250 4dyl_A Tyrosine-protein kinase 28.1 2.2E+02 0.0075 32.4 10.3 36 986-1021 103-139 (406)
251 4dzn_A Coiled-coil peptide CC- 28.1 78 0.0027 23.5 4.1 26 1043-1072 5-30 (33)
252 2efr_A General control protein 27.8 1.3E+02 0.0044 30.5 7.3 51 1026-1076 84-134 (155)
253 1nkp_A C-MYC, MYC proto-oncoge 27.7 52 0.0018 30.1 4.1 60 949-1012 13-83 (88)
254 4a4z_A Antiviral helicase SKI2 27.5 22 0.00076 45.4 2.1 24 155-180 47-70 (997)
255 1nlw_A MAD protein, MAX dimeri 27.4 66 0.0023 28.9 4.6 62 945-1011 5-77 (80)
256 2qag_C Septin-7; cell cycle, c 27.3 13 0.00043 43.1 -0.1 23 159-181 26-48 (418)
257 2orw_A Thymidine kinase; TMTK, 27.1 12 0.00042 37.8 -0.2 18 166-183 5-22 (184)
258 2qnr_A Septin-2, protein NEDD5 27.0 13 0.00045 40.5 -0.0 23 159-181 13-35 (301)
259 2ch7_A Methyl-accepting chemot 26.9 5.9E+02 0.02 26.9 22.0 22 965-989 150-171 (309)
260 1zp6_A Hypothetical protein AT 26.6 14 0.00049 36.3 0.1 16 166-181 11-26 (191)
261 1rj9_A FTSY, signal recognitio 26.4 17 0.00059 40.0 0.8 17 165-181 103-119 (304)
262 2b8t_A Thymidine kinase; deoxy 26.3 13 0.00046 39.2 -0.1 19 165-183 13-31 (223)
263 2wjy_A Regulator of nonsense t 26.3 22 0.00077 44.3 1.8 26 156-183 365-390 (800)
264 1ypw_A Transitional endoplasmi 26.1 19 0.00066 44.8 1.2 52 130-181 199-255 (806)
265 3e1s_A Exodeoxyribonuclease V, 26.0 22 0.00074 42.6 1.6 26 156-183 198-223 (574)
266 1ye8_A Protein THEP1, hypothet 26.0 16 0.00054 36.9 0.3 15 167-181 3-17 (178)
267 2xzl_A ATP-dependent helicase 26.0 22 0.00074 44.5 1.6 19 165-183 376-394 (802)
268 1ly1_A Polynucleotide kinase; 26.0 17 0.00058 35.1 0.6 16 166-181 4-19 (181)
269 3i00_A HIP-I, huntingtin-inter 25.8 2.6E+02 0.0089 27.1 8.8 18 995-1012 40-57 (120)
270 2gza_A Type IV secretion syste 25.7 17 0.00058 40.8 0.6 19 161-181 174-192 (361)
271 1uaa_A REP helicase, protein ( 25.7 20 0.00067 43.3 1.1 21 163-183 14-34 (673)
272 2yy0_A C-MYC-binding protein; 25.6 52 0.0018 27.6 3.3 21 1044-1064 23-43 (53)
273 2eqb_B RAB guanine nucleotide 25.5 4.3E+02 0.015 24.9 12.9 58 985-1058 37-94 (97)
274 2qen_A Walker-type ATPase; unk 25.5 28 0.00095 37.2 2.2 17 165-181 32-48 (350)
275 2pt7_A CAG-ALFA; ATPase, prote 25.5 17 0.00059 40.3 0.5 20 161-182 170-189 (330)
276 2px0_A Flagellar biosynthesis 25.4 22 0.00077 38.8 1.4 18 165-182 106-123 (296)
277 2ehv_A Hypothetical protein PH 25.3 17 0.00058 37.1 0.4 18 165-182 31-48 (251)
278 3trf_A Shikimate kinase, SK; a 25.3 18 0.00061 35.5 0.6 15 166-180 7-21 (185)
279 3sop_A Neuronal-specific septi 25.2 15 0.00052 39.6 0.0 19 163-181 1-19 (270)
280 2j41_A Guanylate kinase; GMP, 25.1 17 0.00057 36.1 0.3 16 166-181 8-23 (207)
281 1gk6_A Vimentin; intermediate 25.0 1.5E+02 0.0052 25.1 6.2 48 1027-1074 1-51 (59)
282 3vem_A Helicase protein MOM1; 24.9 4.8E+02 0.016 25.2 10.4 77 976-1077 31-111 (115)
283 2x3v_A Syndapin I, protein kin 24.7 6.9E+02 0.024 27.0 16.7 28 995-1022 127-154 (337)
284 2og2_A Putative signal recogni 24.5 36 0.0012 38.5 2.9 16 166-181 159-174 (359)
285 3iij_A Coilin-interacting nucl 24.4 20 0.00067 35.2 0.7 17 165-181 12-28 (180)
286 3tnu_A Keratin, type I cytoske 24.3 3.6E+02 0.012 26.0 9.6 68 1003-1074 46-117 (131)
287 3lnc_A Guanylate kinase, GMP k 24.2 20 0.00068 36.9 0.7 16 166-181 29-44 (231)
288 2p6r_A Afuhel308 helicase; pro 24.2 20 0.00069 43.4 0.8 32 140-181 26-57 (702)
289 2ocy_A RAB guanine nucleotide 24.2 5.7E+02 0.019 25.8 15.6 72 987-1074 71-145 (154)
290 1f5n_A Interferon-induced guan 24.0 1E+03 0.034 28.7 18.6 71 915-991 511-581 (592)
291 2v6i_A RNA helicase; membrane, 24.0 24 0.00082 40.3 1.4 16 166-181 4-19 (431)
292 2d7d_A Uvrabc system protein B 23.9 39 0.0013 41.1 3.3 48 131-183 4-51 (661)
293 2bdt_A BH3686; alpha-beta prot 23.9 18 0.00063 35.7 0.3 16 166-181 4-19 (189)
294 3kta_A Chromosome segregation 23.8 19 0.00064 35.3 0.4 16 166-181 28-43 (182)
295 2zj8_A DNA helicase, putative 23.7 19 0.00064 43.8 0.4 20 160-181 37-56 (720)
296 1odf_A YGR205W, hypothetical 3 23.3 36 0.0012 37.1 2.6 18 164-181 31-48 (290)
297 2jlq_A Serine protease subunit 23.3 25 0.00084 40.4 1.3 24 156-180 12-35 (451)
298 1qhx_A CPT, protein (chloramph 23.3 21 0.00071 34.7 0.6 17 165-181 4-20 (178)
299 1gl2_B Syntaxin 7; membrane pr 23.1 2.1E+02 0.0073 24.4 6.9 60 991-1053 5-64 (65)
300 3swk_A Vimentin; cytoskeleton, 22.9 4.3E+02 0.015 24.0 9.5 21 1043-1063 66-86 (86)
301 2fna_A Conserved hypothetical 22.7 23 0.00079 37.8 0.9 17 165-181 31-47 (357)
302 1znw_A Guanylate kinase, GMP k 22.7 19 0.00066 36.4 0.2 16 166-181 22-37 (207)
303 1z6g_A Guanylate kinase; struc 22.6 21 0.0007 36.9 0.4 16 166-181 25-40 (218)
304 1xx6_A Thymidine kinase; NESG, 22.6 17 0.0006 37.3 -0.1 18 166-183 10-27 (191)
305 2i3b_A HCR-ntpase, human cance 22.5 21 0.00072 36.5 0.4 16 166-181 3-18 (189)
306 2v71_A Nuclear distribution pr 22.5 6.7E+02 0.023 26.1 19.6 19 978-996 89-107 (189)
307 3a7p_A Autophagy protein 16; c 22.4 3.9E+02 0.013 27.0 9.5 75 996-1073 69-147 (152)
308 2zqm_A Prefoldin beta subunit 22.3 2.2E+02 0.0074 26.4 7.4 57 1017-1074 55-111 (117)
309 2z83_A Helicase/nucleoside tri 22.3 26 0.00089 40.3 1.3 16 166-181 23-38 (459)
310 1gku_B Reverse gyrase, TOP-RG; 22.2 35 0.0012 43.8 2.5 23 155-179 64-86 (1054)
311 3a2a_A Voltage-gated hydrogen 22.1 50 0.0017 28.0 2.5 21 778-798 27-47 (58)
312 3hnw_A Uncharacterized protein 22.0 1.7E+02 0.0059 28.9 6.9 71 444-531 68-138 (138)
313 3i2w_A Syndapin, LD46328P; EFC 22.0 2.9E+02 0.0098 29.4 9.3 29 995-1023 114-142 (290)
314 1joc_A EEA1, early endosomal a 21.9 94 0.0032 30.0 4.9 35 1039-1073 10-44 (125)
315 1kht_A Adenylate kinase; phosp 21.9 23 0.00078 34.5 0.6 16 166-181 5-20 (192)
316 1yks_A Genome polyprotein [con 21.8 27 0.00093 40.0 1.3 20 160-181 6-25 (440)
317 2ze6_A Isopentenyl transferase 21.8 23 0.00078 37.5 0.6 15 166-180 3-17 (253)
318 3m9b_A Proteasome-associated A 21.7 75 0.0025 34.6 4.5 59 1002-1061 31-89 (251)
319 1kag_A SKI, shikimate kinase I 21.4 24 0.00083 34.0 0.7 16 166-181 6-21 (173)
320 2xgj_A ATP-dependent RNA helic 21.4 31 0.001 44.2 1.7 23 157-181 96-118 (1010)
321 2yhs_A FTSY, cell division pro 21.3 34 0.0012 40.6 2.0 16 166-181 295-310 (503)
322 4igg_A Catenin alpha-1; asymme 21.2 4.7E+02 0.016 33.0 12.1 20 914-933 291-310 (832)
323 1s1c_X RHO-associated, coiled- 21.1 1.3E+02 0.0044 26.9 5.1 41 1023-1073 17-57 (71)
324 3kl4_A SRP54, signal recogniti 21.1 58 0.002 37.8 3.8 18 165-182 98-115 (433)
325 3kb2_A SPBC2 prophage-derived 20.9 25 0.00085 33.6 0.6 16 166-181 3-18 (173)
326 3l9o_A ATP-dependent RNA helic 20.9 31 0.0011 44.6 1.6 23 156-180 193-215 (1108)
327 1j8m_F SRP54, signal recogniti 20.9 58 0.002 35.6 3.6 17 166-182 100-116 (297)
328 2bbw_A Adenylate kinase 4, AK4 20.7 23 0.00079 36.8 0.3 17 165-181 28-44 (246)
329 3mq9_A Bone marrow stromal ant 20.6 4.6E+02 0.016 29.8 11.2 51 920-970 357-417 (471)
330 2xau_A PRE-mRNA-splicing facto 20.6 29 0.00099 43.1 1.2 15 166-180 111-125 (773)
331 3vaa_A Shikimate kinase, SK; s 20.5 25 0.00084 35.4 0.5 16 166-181 27-42 (199)
332 3uie_A Adenylyl-sulfate kinase 20.3 30 0.001 34.8 1.0 18 164-181 25-42 (200)
333 1jth_B Syntaxin 1A; coiled-coi 20.3 3.6E+02 0.012 23.6 8.0 61 991-1054 6-66 (77)
334 2eyq_A TRCF, transcription-rep 20.2 43 0.0015 43.5 2.7 22 160-181 620-641 (1151)
335 3rc3_A ATP-dependent RNA helic 20.1 25 0.00087 43.0 0.6 19 160-180 153-171 (677)
336 3s4r_A Vimentin; alpha-helix, 20.1 4.9E+02 0.017 23.9 9.1 18 997-1014 25-42 (93)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=3.6e-88 Score=765.58 Aligned_cols=351 Identities=35% Similarity=0.559 Sum_probs=288.2
Q ss_pred CCCCCceeEeeeCCCCcccccCC-CeEEEeC----CCceeecCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcc
Q 001229 92 VSDPSVKVVVRIRPANDLERDSN-QTVKKVS----SDSLAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVS 166 (1119)
Q Consensus 92 ~~~~~VkVvVRVRP~~~~E~~~~-~~v~~~s----~~~l~v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~t 166 (1119)
...++|+|+|||||++..|...+ ..+..+. ...+.++++.|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t 87 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGT 87 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEECCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceE
Confidence 35678999999999998885433 3333333 345667789999999999999999999999999999999999999
Q ss_pred eeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeecccccccccc
Q 001229 167 LLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQ 246 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~ 246 (1119)
|||||||||||||||+|... ....+|||||++++||..|.... ....|.|+|||+|||||+|+|||++
T Consensus 88 ifAYGqTGSGKTyTm~G~~~-------~~~~~Giipr~~~~lF~~i~~~~-----~~~~~~v~vS~~EIYnE~i~DLL~~ 155 (365)
T 2y65_A 88 IFAYGQTSSGKTHTMEGVIG-------DSVKQGIIPRIVNDIFNHIYAME-----VNLEFHIKVSYYEIYMDKIRDLLDV 155 (365)
T ss_dssp EEEECSTTSSHHHHHTBSTT-------CTTTBCHHHHHHHHHHHHHHHCC-----SCEEEEEEEEEEEEETTEEEETTCT
T ss_pred EEeecCCCCCCceEEecCCC-------CcccCChHHHHHHHHHHHHHhcc-----CCceEEEEEEEEEEECCeeeecccC
Confidence 99999999999999999753 22568999999999999997642 3468999999999999999999998
Q ss_pred CCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCcc
Q 001229 247 TQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSK 326 (1119)
Q Consensus 247 ~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~ 326 (1119)
...++.+++|+.++++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... ....
T Consensus 156 ~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-----~~~~ 230 (365)
T 2y65_A 156 SKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN-----QKKL 230 (365)
T ss_dssp TCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT-----CCEE
T ss_pred CcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC-----CCEe
Confidence 88899999999999999999999999999999999999999999999999999999999999999865432 2346
Q ss_pred ccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEe
Q 001229 327 TSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVV 406 (1119)
Q Consensus 327 ~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mI 406 (1119)
.|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ ++..|||||||||||||||+|||||+|+||
T Consensus 231 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~---~~~~hvPyRdSkLT~lLqdsLgGnskt~mI 307 (365)
T 2y65_A 231 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIV 307 (365)
T ss_dssp EEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHH---CCCSCCCGGGCHHHHHTGGGTTSSSEEEEE
T ss_pred EEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCccccCHHHHHHHhhcCCCccEEEE
Confidence 79999999999999999999999999999999999999999999987 345799999999999999999999999999
Q ss_pred eecCCCCCcHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHHHHh
Q 001229 407 CNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISEDDVNDLSDQIRQLKEELIRAK 464 (1119)
Q Consensus 407 a~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~~~v~~L~~~I~~Lk~EL~rlk 464 (1119)
|||||+..+++||++||+||+|||.|+|.|++|++... ..|.+.+++.++++.+||
T Consensus 308 ~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~--~~~~~~~~~e~~~~~~L~ 363 (365)
T 2y65_A 308 ICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTA--EEWKRRYEKEKEKNARLK 363 (365)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCS--HHHHHC------------
T ss_pred EEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCH--HHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999987653 234344444444444443
No 2
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=5.2e-87 Score=756.75 Aligned_cols=336 Identities=33% Similarity=0.559 Sum_probs=296.6
Q ss_pred CCCCceeEeeeCCCCcccccCCCeEEEeCCC--ceee-----cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCc
Q 001229 93 SDPSVKVVVRIRPANDLERDSNQTVKKVSSD--SLAV-----GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNV 165 (1119)
Q Consensus 93 ~~~~VkVvVRVRP~~~~E~~~~~~v~~~s~~--~l~v-----~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~ 165 (1119)
..++|+|+|||||++..|......+.....+ .+.. ..+.|.||+||+++++|++||+. +.|+|+++|+|||+
T Consensus 3 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~ 81 (369)
T 3cob_A 3 MKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNV 81 (369)
T ss_dssp -CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEE
T ss_pred CCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCce
Confidence 3578999999999998875433222111122 2211 23789999999999999999999 68999999999999
Q ss_pred ceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccc
Q 001229 166 SLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD 245 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~ 245 (1119)
||||||||||||||||+|++ .++|||||++++||..+.... ....|.|+|||+|||||+|+|||+
T Consensus 82 tifAYGqTGSGKTyTM~G~~----------~~~Giipr~~~~lF~~i~~~~-----~~~~~~v~vS~~EIYnE~i~DLL~ 146 (369)
T 3cob_A 82 CIFAYGQTGSGKTFTIYGAD----------SNPGLTPRAMSELFRIMKKDS-----NKFSFSLKAYMVELYQDTLVDLLL 146 (369)
T ss_dssp EEEEEECTTSSHHHHHTBCS----------SSBCHHHHHHHHHHHHHHHTT-----TTEEEEEEEEEEEECSSCEEESSC
T ss_pred EEEEECCCCCCCeEeecCCC----------CCCchhHHHHHHHHHHHHhhc-----cCceeEEEEEEEEEeCceeeecCC
Confidence 99999999999999999975 468999999999999998643 236899999999999999999998
Q ss_pred cC---CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcc
Q 001229 246 QT---QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCF 322 (1119)
Q Consensus 246 ~~---~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~ 322 (1119)
+. ...+.|++|+.++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.....
T Consensus 147 ~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----- 221 (369)
T 3cob_A 147 PKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT----- 221 (369)
T ss_dssp CSSSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT-----
T ss_pred CcccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC-----
Confidence 64 3579999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred cCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCce
Q 001229 323 SSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAK 402 (1119)
Q Consensus 323 ~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSk 402 (1119)
.....|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|++ +..|||||||||||||||+|||||+
T Consensus 222 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGnsk 297 (369)
T 3cob_A 222 QAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS----GNQHIPYRNHKLTMLMSDSLGGNAK 297 (369)
T ss_dssp CCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHT----TCSCCCGGGCHHHHHTTTTTTSSSE
T ss_pred CcEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhc----CCCcCCCcCCHHHHHHHHhcCCCcc
Confidence 235689999999999999999999999999999999999999999999986 4579999999999999999999999
Q ss_pred EeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHH
Q 001229 403 LTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISEDDVNDLSDQIRQLKEELI 461 (1119)
Q Consensus 403 T~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~~~v~~L~~~I~~Lk~EL~ 461 (1119)
|+|||||||+..+++||++||+||+|||+|+|+|++|+++ ++|..|+.+|.
T Consensus 298 t~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--------~ei~~L~~~l~ 348 (369)
T 3cob_A 298 TLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--------KEVARLKKLVS 348 (369)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--------HHHHHHHHHTT
T ss_pred EEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH--------HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 34555555553
No 3
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1.3e-86 Score=768.83 Aligned_cols=335 Identities=36% Similarity=0.616 Sum_probs=272.6
Q ss_pred CCCCCceeEeeeCCCCcccccCC-CeEEEeCCCc--e--------------------eecCeeEEcCeecCC-------C
Q 001229 92 VSDPSVKVVVRIRPANDLERDSN-QTVKKVSSDS--L--------------------AVGERKFAFDSVLDS-------N 141 (1119)
Q Consensus 92 ~~~~~VkVvVRVRP~~~~E~~~~-~~v~~~s~~~--l--------------------~v~~k~F~FD~VFd~-------~ 141 (1119)
...++|+|+|||||++..|...+ ..+..+.... + ....+.|+||+||++ +
T Consensus 35 ~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~ 114 (443)
T 2owm_A 35 DPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHY 114 (443)
T ss_dssp CCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTC
T ss_pred CCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccC
Confidence 34678999999999998875332 2232222110 0 113578999999976 4
Q ss_pred CChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCC
Q 001229 142 SNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDG 221 (1119)
Q Consensus 142 asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~ 221 (1119)
++|++||+.++.|+|+++|+|||+||||||||||||||||+|++ .++|||||++++||..|...... .
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~----------~~~GIipr~~~~lF~~i~~~~~~--~ 182 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP----------DQPGLIPRTCEDLFQRIASAQDE--T 182 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCT----------TSCCHHHHHHHHHHHHHHHTTTT--S
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCC----------CCCchHHHHHHHHHHHHHhhhcc--c
Confidence 89999999999999999999999999999999999999999975 46899999999999999875432 2
Q ss_pred CceeEEEEEEEEeeeccccccccccC-----CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCC
Q 001229 222 KQINYQCRCSFLEIYNEQIGDLLDQT-----QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVN 296 (1119)
Q Consensus 222 ~~~~fsV~vSylEIYNE~I~DLL~~~-----~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N 296 (1119)
....|.|+|||+|||||+|+|||++. ...|.|++|+.+|+||.||+++.|.+++|++.+|..|.++|++++|.||
T Consensus 183 ~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N 262 (443)
T 2owm_A 183 PNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMN 262 (443)
T ss_dssp TTCEEEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSS
T ss_pred CCceEEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCC
Confidence 35689999999999999999999863 2359999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEeeecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhcc
Q 001229 297 SKSSRSHIVFTFIVESWCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETL 376 (1119)
Q Consensus 297 ~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~ 376 (1119)
..|||||+||+|+|++..... ..+......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++...
T Consensus 263 ~~SSRSH~Ifti~v~~~~~~~-~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~ 341 (443)
T 2owm_A 263 DTSSRSHAVFTIMLKQIHHDL-ETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKS 341 (443)
T ss_dssp CBCTTEEEEEEEEEEEEC--------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---
T ss_pred CccCCCeEEEEEEEEEeeccc-CCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccc
Confidence 999999999999999865432 1122345689999999999999999999999999999999999999999999987542
Q ss_pred C------------------CCCCccCCCCcccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhccccccccc
Q 001229 377 G------------------KSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVI 438 (1119)
Q Consensus 377 ~------------------k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~v 438 (1119)
+ +..|||||||||||||||+|||||+|+|||||||+ +++||++||+||+|||+|+|+|++
T Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~v 419 (443)
T 2owm_A 342 SASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVV 419 (443)
T ss_dssp ----------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCC
T ss_pred cccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhcccccee
Confidence 1 23599999999999999999999999999999997 599999999999999999999999
Q ss_pred ccc
Q 001229 439 NEI 441 (1119)
Q Consensus 439 Ne~ 441 (1119)
|++
T Consensus 420 N~~ 422 (443)
T 2owm_A 420 NQV 422 (443)
T ss_dssp CCC
T ss_pred ccc
Confidence 994
No 4
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.1e-86 Score=746.07 Aligned_cols=332 Identities=38% Similarity=0.626 Sum_probs=283.8
Q ss_pred CCCceeEeeeCCCCcccccCC---CeEEEeCCCceee--cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCccee
Q 001229 94 DPSVKVVVRIRPANDLERDSN---QTVKKVSSDSLAV--GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLL 168 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~E~~~~---~~v~~~s~~~l~v--~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIf 168 (1119)
.++|+|+|||||++..|...+ ..........+.. +.+.|.||+||+++++|++||+.++.|+|+++|+|||+|||
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tif 82 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIF 82 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETTSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECCCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCcccee
Confidence 678999999999998875422 1122222232221 45799999999999999999999999999999999999999
Q ss_pred eeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccCC
Q 001229 169 SYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQ 248 (1119)
Q Consensus 169 AYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~~ 248 (1119)
|||||||||||||+|++ ..+|||||++++||..|.... ...|.|+|||+|||||+|+|||++..
T Consensus 83 AYGqTGSGKTyTM~G~~----------~~~Giipr~~~~lF~~i~~~~------~~~~~v~vS~~EIYnE~i~DLL~~~~ 146 (349)
T 1t5c_A 83 AYGQTASGKTYTMMGSE----------DHLGVIPRAIHDIFQKIKKFP------DREFLLRVSYMEIYNETITDLLCGTQ 146 (349)
T ss_dssp EEESTTSSHHHHHTBCS----------SSBCHHHHHHHHHHHHGGGCT------TEEEEEEEEEEEEETTEEEESSSSSC
T ss_pred eecCCCCCCCeEEecCC----------CCCchHHHHHHHHHHHHHhCc------CCcEEEEEEEEEEeCCEEEEccCCCC
Confidence 99999999999999975 468999999999999996532 35799999999999999999998653
Q ss_pred --CcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCcc
Q 001229 249 --RNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSK 326 (1119)
Q Consensus 249 --~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~ 326 (1119)
.++.|++|+.+|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..............
T Consensus 147 ~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~ 226 (349)
T 1t5c_A 147 KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVK 226 (349)
T ss_dssp TTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEE
T ss_pred CCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEE
Confidence 579999999999999999999999999999999999999999999999999999999999999876543333333457
Q ss_pred ccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEe
Q 001229 327 TSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVV 406 (1119)
Q Consensus 327 ~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mI 406 (1119)
.|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++.. +..|||||||||||||||+|||||+|+||
T Consensus 227 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~--~~~hvPyRdSkLT~lLqdsLgGnskt~mI 304 (349)
T 1t5c_A 227 VSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQ--VGGFINYRDSKLTRILQNSLGGNAKTRII 304 (349)
T ss_dssp EEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTC--CTTSSCGGGSHHHHHTGGGTTSSSEEEEE
T ss_pred EEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccC--CCCCCcccccHHHHHHHHhcCCCceEEEE
Confidence 8999999999999999999999999999999999999999999999743 34699999999999999999999999999
Q ss_pred eecCCCCCcHHHHHHHHHHHHHhcccccccccccccHHH
Q 001229 407 CNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISEDD 445 (1119)
Q Consensus 407 a~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~~~ 445 (1119)
|||||. +++||++||+||+|||+|+|+|++|+++...
T Consensus 305 ~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 305 CTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp EEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred EEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCCC
Confidence 999997 5899999999999999999999999987653
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-86 Score=756.15 Aligned_cols=347 Identities=32% Similarity=0.514 Sum_probs=256.1
Q ss_pred CCCCCceeEeeeCCCCcccccCC--CeEEEeCCCceee-------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcC
Q 001229 92 VSDPSVKVVVRIRPANDLERDSN--QTVKKVSSDSLAV-------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAG 162 (1119)
Q Consensus 92 ~~~~~VkVvVRVRP~~~~E~~~~--~~v~~~s~~~l~v-------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~G 162 (1119)
...++|+|+|||||++..|.... .++...+...+.+ ..+.|+||+||+++++|++||+.++.|+|+++|+|
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G 97 (388)
T 3bfn_A 18 GPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEG 97 (388)
T ss_dssp SCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTT
T ss_pred CCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcC
Confidence 45788999999999998875432 2333233333222 23689999999999999999999999999999999
Q ss_pred CCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeecccccc
Q 001229 163 YNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGD 242 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~D 242 (1119)
||+||||||||||||||||+|++ .++|||||++++||..+..... ......|.|+|||+|||||+|+|
T Consensus 98 ~N~tifAYGqTGSGKTyTM~G~~----------~~~Giipra~~~lF~~i~~~~~--~~~~~~~~V~vS~lEIYnE~i~D 165 (388)
T 3bfn_A 98 QNASVLAYGPTGAGKTHTMLGSP----------EQPGVIPRALMDLLQLTREEGA--EGRPWALSVTMSYLEIYQEKVLD 165 (388)
T ss_dssp CCEEEEEESCTTSSHHHHHTBCS----------SSBCHHHHHHHHHHHHHHHHTS--TTCSEEEEEEEEEEEEETTEEEE
T ss_pred ceeeEeeecCCCCCCCeEeecCc----------cccchhHHHHHHHHHHHHHhhc--cCCCceEEEEEEEEEEECCeeee
Confidence 99999999999999999999975 4689999999999999986432 23457899999999999999999
Q ss_pred ccccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcc
Q 001229 243 LLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCF 322 (1119)
Q Consensus 243 LL~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~ 322 (1119)
||++....+.|++|+.++++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++......
T Consensus 166 LL~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~---- 241 (388)
T 3bfn_A 166 LLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP---- 241 (388)
T ss_dssp SSSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTT----
T ss_pred hhccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCC----
Confidence 9999888999999999999999999999999999999999999999999999999999999999999988654321
Q ss_pred cCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCce
Q 001229 323 SSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAK 402 (1119)
Q Consensus 323 ~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSk 402 (1119)
.....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ +..|||||||||||||||+|||||+
T Consensus 242 ~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~----~~~hVPYRdSkLTrlLqdsLgGnsk 317 (388)
T 3bfn_A 242 FRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQ----GLPRVPYRDSKLTRLLQDSLGGSAH 317 (388)
T ss_dssp CCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTTTSSSTTCE
T ss_pred CceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhc----CCCCCcCcccHHHHHHHHhhCCCcc
Confidence 224679999999999999999999999999999999999999999999986 3469999999999999999999999
Q ss_pred EeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHHHHH
Q 001229 403 LTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISEDDVNDLSDQIRQLKEELI 461 (1119)
Q Consensus 403 T~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~~~v~~L~~~I~~Lk~EL~ 461 (1119)
|+|||||||+..+++||++||+||+|||.|+|+|++|++..... -..++.+++||.
T Consensus 318 T~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~---l~~~k~~~~~l~ 373 (388)
T 3bfn_A 318 SILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHA---LGPVKLSQKELL 373 (388)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHCSEEEEC----------------------------
T ss_pred EEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHH---HHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999866431 234455555653
No 6
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=7.7e-86 Score=744.36 Aligned_cols=331 Identities=39% Similarity=0.645 Sum_probs=297.8
Q ss_pred CCCceeEeeeCCCCcccccCC--CeEEEeCCCceee----cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcce
Q 001229 94 DPSVKVVVRIRPANDLERDSN--QTVKKVSSDSLAV----GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSL 167 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~E~~~~--~~v~~~s~~~l~v----~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tI 167 (1119)
.++|+|+|||||++..|...+ .++.......+.+ ..+.|.||+||+++++|++||+.++.|+|+++|+|||+||
T Consensus 5 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ti 84 (355)
T 1goj_A 5 ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTV 84 (355)
T ss_dssp SCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEE
T ss_pred CCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceE
Confidence 578999999999998875432 2333333333333 2468999999999999999999999999999999999999
Q ss_pred eeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccC
Q 001229 168 LSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQT 247 (1119)
Q Consensus 168 fAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~ 247 (1119)
||||||||||||||+|+... ....+|||||++++||..|... .....|.|+|||+|||||+|+|||++.
T Consensus 85 fAYGqTGSGKTyTm~G~~~~------~~~~~Giipr~~~~lF~~i~~~-----~~~~~~~v~vS~~EIYnE~i~DLL~~~ 153 (355)
T 1goj_A 85 FAYGQTGAGKSYTMMGTSID------DPDGRGVIPRIVEQIFTSILSS-----AANIEYTVRVSYMEIYMERIRDLLAPQ 153 (355)
T ss_dssp EEECSTTSSHHHHHTBSCTT------STTTBCHHHHHHHHHHHHHHTS-----CTTEEEEEEEEEEEEETTEEEETTSTT
T ss_pred EEECCCCCCcceEeecCCCC------CcccCCchHHHHHHHHHHHHhc-----ccCceEEEEEEEEEEECCEEEEcccCc
Confidence 99999999999999996421 2357899999999999999753 235689999999999999999999998
Q ss_pred CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCccc
Q 001229 248 QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSKT 327 (1119)
Q Consensus 248 ~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~ 327 (1119)
...+.|++++.+|++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+..... .....
T Consensus 154 ~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-----~~~~~ 228 (355)
T 1goj_A 154 NDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET-----GSAKS 228 (355)
T ss_dssp CCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT-----TEEEE
T ss_pred cCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC-----Cceee
Confidence 8899999999999999999999999999999999999999999999999999999999999999865432 23468
Q ss_pred cceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEee
Q 001229 328 SRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVC 407 (1119)
Q Consensus 328 SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa 407 (1119)
|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|++ ++..|||||||||||||||+|||||+|+|||
T Consensus 229 skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~---~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~ 305 (355)
T 1goj_A 229 GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTD---GKSSHVPYRDSKLTRILQESLGGNSRTTLII 305 (355)
T ss_dssp EEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHH---CSCSCCCGGGCHHHHHTGGGTTSSCEEEEEE
T ss_pred eEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhc---CCCCCCCCccCHHHHHHHHHhCCCCcEEEEE
Confidence 9999999999999999999999999999999999999999999987 4567999999999999999999999999999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHhcccccccccccccH
Q 001229 408 NISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISE 443 (1119)
Q Consensus 408 ~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~ 443 (1119)
||||+..+++||++||+||+|||.|+|+|++|++..
T Consensus 306 ~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~ 341 (355)
T 1goj_A 306 NCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELS 341 (355)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSS
T ss_pred EECcccccHHHHHHHHHHHHHHhhccCCceeCCCCC
Confidence 999999999999999999999999999999998754
No 7
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=4.6e-86 Score=744.75 Aligned_cols=329 Identities=36% Similarity=0.594 Sum_probs=265.6
Q ss_pred CCCCceeEeeeCCCCcccccCC-CeEEEeC--CCcee--------------ecCeeEEcCeecCCCCChHHHHHHhhHHH
Q 001229 93 SDPSVKVVVRIRPANDLERDSN-QTVKKVS--SDSLA--------------VGERKFAFDSVLDSNSNQEDIFQVVGLPL 155 (1119)
Q Consensus 93 ~~~~VkVvVRVRP~~~~E~~~~-~~v~~~s--~~~l~--------------v~~k~F~FD~VFd~~asQeeVY~~v~~pL 155 (1119)
..++|+|+|||||++..|...+ ..+..+. ...+. ...+.|.||+||+++++|++||+.++.|+
T Consensus 2 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPL 81 (350)
T ss_dssp --CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHH
Confidence 3578999999999998875332 2222221 11221 12478999999999999999999999999
Q ss_pred HHHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEee
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEI 235 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEI 235 (1119)
|+++|+|||+||||||||||||||||+|+. .++|||||++++||..+... .....|.|+|||+||
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~----------~~~Giipr~~~~lF~~i~~~-----~~~~~~~v~vS~~EI 146 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNK----------EEPGAIPNSFKHLFDAINSS-----SSNQNFLVIGSYLEL 146 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCS----------SSBCHHHHHHHHHHHHHHTC-----CTTEEEEEEEEEEEE
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEeecCC----------ccCchHHHHHHHHHHHHHhh-----ccCCcEEEEEEEEEE
Confidence 999999999999999999999999999975 46899999999999999743 234679999999999
Q ss_pred eccccccccccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeec
Q 001229 236 YNEQIGDLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCK 315 (1119)
Q Consensus 236 YNE~I~DLL~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~ 315 (1119)
|||+|+|||++ ...+.|++|+.+|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++...
T Consensus 147 YnE~i~DLL~~-~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 225 (350)
T 2vvg_A 147 YNEEIRDLIKN-NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEV 225 (350)
T ss_dssp ETTEEEETTTT-EEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC
T ss_pred eCCEEEEcccC-CcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeec
Confidence 99999999984 56799999999999999999999999999999999999999999999999999999999999988654
Q ss_pred ccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccc
Q 001229 316 EASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRE 395 (1119)
Q Consensus 316 ~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqD 395 (1119)
. .+......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ +..|||||||||||||||
T Consensus 226 ~---~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqd 298 (350)
T 2vvg_A 226 I---ENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVE----GATHIPYRDSKLTRLLQD 298 (350)
T ss_dssp -------CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHH----TCSSCCGGGCHHHHHTTT
T ss_pred c---CCCccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHc----CCCCCCccccHHHHHHHH
Confidence 3 122234679999999999999999999999999999999999999999999997 347999999999999999
Q ss_pred cCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccccccHH
Q 001229 396 SLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISED 444 (1119)
Q Consensus 396 SLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~~ 444 (1119)
+|||||+|+|||||||+..+++||++||+||+|||+|+|+|++|+++.+
T Consensus 299 sLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 299 SLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp TTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred hcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 9999999999999999999999999999999999999999999998754
No 8
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=3.5e-86 Score=750.40 Aligned_cols=335 Identities=39% Similarity=0.627 Sum_probs=279.3
Q ss_pred CCCCCceeEeeeCCCCcccccCC-CeEEEeC--CCceee---------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHH
Q 001229 92 VSDPSVKVVVRIRPANDLERDSN-QTVKKVS--SDSLAV---------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNA 159 (1119)
Q Consensus 92 ~~~~~VkVvVRVRP~~~~E~~~~-~~v~~~s--~~~l~v---------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~v 159 (1119)
...++|+|+|||||++..|...+ ..+..+. ...+.+ ..+.|.||+||+++++|++||+.++.|+|+++
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 97 (372)
T 3b6u_A 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSV 97 (372)
T ss_dssp ---CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHH
Confidence 34678999999999998875432 2222221 222222 24789999999999999999999999999999
Q ss_pred HcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQ 239 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~ 239 (1119)
|+|||+||||||||||||||||+|... ....+|||||++++||..|... ....|.|+|||+|||||+
T Consensus 98 l~G~n~tifAYGqTGSGKTyTM~G~~~-------~~~~~Giipr~~~~lF~~i~~~------~~~~~~v~vS~~EIYnE~ 164 (372)
T 3b6u_A 98 LQGFNGTIFAYGQTGTGKTYTMEGIRG-------DPEKRGVIPNSFDHIFTHISRS------QNQQYLVRASYLEIYQEE 164 (372)
T ss_dssp HTTCCEEEEEEESTTSSHHHHHTBCTT-------SGGGBCHHHHHHHHHHHHHHTC------SSCEEEEEEEEEEEETTE
T ss_pred hCCCeeeEEeecCCCCCCCEeEecCCC-------CcccCCcHHHHHHHHHHHhhhc------cCCceEEEEEEEEEeCCE
Confidence 999999999999999999999999653 1256899999999999999752 345799999999999999
Q ss_pred cccccccC-CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccC
Q 001229 240 IGDLLDQT-QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEAS 318 (1119)
Q Consensus 240 I~DLL~~~-~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~ 318 (1119)
|+|||++. ...+.|++++.+|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++.....
T Consensus 165 i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~- 243 (372)
T 3b6u_A 165 IRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGL- 243 (372)
T ss_dssp EEETTSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC----
T ss_pred EEECCCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCC-
Confidence 99999875 3579999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCC
Q 001229 319 SKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLG 398 (1119)
Q Consensus 319 ~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLG 398 (1119)
.+......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ ++..|||||||||||||||+||
T Consensus 244 -~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~---~~~~hvPyRdSkLT~lLqdsLg 319 (372)
T 3b6u_A 244 -DGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLG 319 (372)
T ss_dssp ---CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHC---C---CCCGGGSHHHHHTTTTTT
T ss_pred -CCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhc---CCCCCCcccccHHHHHHHHhcC
Confidence 222345689999999999999999999999999999999999999999999986 3457999999999999999999
Q ss_pred CCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccccccccHH
Q 001229 399 GNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEISED 444 (1119)
Q Consensus 399 GNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~~~ 444 (1119)
|||+|+|||||||+..+++||++||+||+|||+|+|+|++|+++.+
T Consensus 320 Gnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~ 365 (372)
T 3b6u_A 320 GNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD 365 (372)
T ss_dssp SSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC----
T ss_pred CCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHH
Confidence 9999999999999999999999999999999999999999997653
No 9
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.2e-85 Score=745.62 Aligned_cols=334 Identities=37% Similarity=0.641 Sum_probs=276.7
Q ss_pred CCCceeEeeeCCCCcccccC-CCeEEEeCCCceee--------cCeeEEcCeecCCC--------CChHHHHHHhhHHHH
Q 001229 94 DPSVKVVVRIRPANDLERDS-NQTVKKVSSDSLAV--------GERKFAFDSVLDSN--------SNQEDIFQVVGLPLV 156 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~E~~~-~~~v~~~s~~~l~v--------~~k~F~FD~VFd~~--------asQeeVY~~v~~pLV 156 (1119)
.++|+|+|||||++..|... ...+..+.++.+.+ ..+.|+||+||+++ ++|++||+.++.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 46899999999999887543 23344444443322 25789999999987 899999999999999
Q ss_pred HHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeee
Q 001229 157 KNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIY 236 (1119)
Q Consensus 157 ~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIY 236 (1119)
+++|+|||+||||||||||||||||+|+.. ..++|||||++++||..|.... .....|.|+|||+|||
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~--------~~~~Giipr~~~~lF~~i~~~~----~~~~~~~v~vS~~EIY 150 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQE--------KDQQGIIPQLCEDLFSRINDTT----NDNMSYSVEVSYMEIY 150 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSG--------GGCBCHHHHHHHHHHHHHHTCC----CTTEEEEEEEEEEEEE
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCc--------cCCCccHHHHHHHHHHHHhhcc----cCCeeEEEEEEEEEee
Confidence 999999999999999999999999999752 2468999999999999997542 2356899999999999
Q ss_pred ccccccccccCC-CcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeec
Q 001229 237 NEQIGDLLDQTQ-RNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCK 315 (1119)
Q Consensus 237 NE~I~DLL~~~~-~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~ 315 (1119)
||+|+|||++.. ..+.|++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++...
T Consensus 151 nE~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 230 (366)
T 2zfi_A 151 CERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRH 230 (366)
T ss_dssp TTEEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEE
T ss_pred CCeEEEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecc
Confidence 999999998764 5799999999999999999999999999999999999999999999999999999999999998655
Q ss_pred ccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhcc--------CCCCCccCCCC
Q 001229 316 EASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETL--------GKSEDVIYRCS 387 (1119)
Q Consensus 316 ~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~--------~k~~hVPYRDS 387 (1119)
.. ..+......|+|+|||||||||.+++++.|.|++|+.+||+||++||+||.+|++... ++..|||||||
T Consensus 231 ~~-~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdS 309 (366)
T 2zfi_A 231 DA-ETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 309 (366)
T ss_dssp CT-TTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGS
T ss_pred cC-CCCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCccccccc
Confidence 42 2222334679999999999999999999999999999999999999999999997531 24679999999
Q ss_pred cccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhccccccccccc
Q 001229 388 CLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINE 440 (1119)
Q Consensus 388 KLTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe 440 (1119)
||||||||+|||||+|+|||||||+..+++||++||+||+|||+|+|+|+++.
T Consensus 310 kLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 310 VLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp HHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999875
No 10
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.9e-85 Score=733.69 Aligned_cols=320 Identities=35% Similarity=0.561 Sum_probs=292.4
Q ss_pred CCCCCceeEeeeCCCCcccccCC--CeEEEeCCCceeecCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceee
Q 001229 92 VSDPSVKVVVRIRPANDLERDSN--QTVKKVSSDSLAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLS 169 (1119)
Q Consensus 92 ~~~~~VkVvVRVRP~~~~E~~~~--~~v~~~s~~~l~v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfA 169 (1119)
...++|+|+|||||++..|...+ ..+.....+.+.+..+.|.||+||+++++|++||+.++.|+|+++|+|||+||||
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifA 83 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFA 83 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEE
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEECCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEE
Confidence 34688999999999998885432 3344455667777889999999999999999999999999999999999999999
Q ss_pred eccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccCCC
Q 001229 170 YGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQTQR 249 (1119)
Q Consensus 170 YGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~~~ 249 (1119)
||||||||||||+|+.. ....+|||||++++||..|.... ....|.|+|||+|||||+|+|||++...
T Consensus 84 YGqTGSGKTyTm~G~~~-------~~~~~Giipr~~~~lF~~i~~~~-----~~~~~~v~vS~~EIYnE~v~DLL~~~~~ 151 (325)
T 1bg2_A 84 YGQTSSGKTHTMEGKLH-------DPEGMGIIPRIVQDIFNYIYSMD-----ENLEFHIKVSYFEIYLDKIRDLLDVSKT 151 (325)
T ss_dssp ECSTTSSHHHHHTBSTT-------CTTTBCHHHHHHHHHHHHHHHHC-----SSEEEEEEEEEEEEETTEEEESSCTTCC
T ss_pred ECCCCCCCceEecccCC-------CcccCccHHHHHHHHHHHHHhcc-----CCceEEEEEEEEEEecCeeeecccCCCC
Confidence 99999999999999753 12567999999999999997643 3468999999999999999999999888
Q ss_pred cceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCccccc
Q 001229 250 NLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSKTSR 329 (1119)
Q Consensus 250 ~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~Sr 329 (1119)
++.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++..... .....|+
T Consensus 152 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-----~~~~~sk 226 (325)
T 1bg2_A 152 NLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT-----EQKLSGK 226 (325)
T ss_dssp SBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT-----CCEEEEE
T ss_pred CceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC-----CcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999865432 2346799
Q ss_pred eeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEeeec
Q 001229 330 ICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNI 409 (1119)
Q Consensus 330 L~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~I 409 (1119)
|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|++ +..|||||||||||||||+|||||+|+|||||
T Consensus 227 l~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGns~t~mia~v 302 (325)
T 1bg2_A 227 LYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVICC 302 (325)
T ss_dssp EEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEE
T ss_pred EEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHc----CCCCCcccccHHHHHHHHHhCCCCcEEEEEEE
Confidence 99999999999999999999999999999999999999999986 35799999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhccc
Q 001229 410 SPDNKDVGEILSTIRFGQRVKSI 432 (1119)
Q Consensus 410 SPs~~~~eETLsTLrFAsRAK~I 432 (1119)
||+..+++||++||+||+|||+|
T Consensus 303 sP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 303 SPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp CCBGGGHHHHHHHHHHHHTSCCC
T ss_pred CCccccHHHHHHHHHHHHHhccC
Confidence 99999999999999999999987
No 11
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.6e-85 Score=742.93 Aligned_cols=336 Identities=33% Similarity=0.558 Sum_probs=271.1
Q ss_pred CCCCCceeEeeeCCCCcccccCC-CeEEEeCC--Cceee---------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHH
Q 001229 92 VSDPSVKVVVRIRPANDLERDSN-QTVKKVSS--DSLAV---------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNA 159 (1119)
Q Consensus 92 ~~~~~VkVvVRVRP~~~~E~~~~-~~v~~~s~--~~l~v---------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~v 159 (1119)
...++|+|+|||||++..|...+ ..+..+.. ..+.+ ..+.|+||+||+++++|++||+.++.|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 34678999999999998875432 22222221 22221 24789999999999999999999999999999
Q ss_pred HcCCCcceeeeccccccccccccCCCCCCCCC-CCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeecc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTMWGPPSAMVED-PSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNE 238 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~-~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE 238 (1119)
|+|||+||||||||||||||||+|+....... ......+|||||++++||..+.. ....|.|+|||+|||||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-------~~~~~~v~vS~~EIYnE 157 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-------NGTEFSVKVSLLEIYNE 157 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-------SSEEEEEEEEEEEEETT
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-------cCceEEEEEEEEEEeCc
Confidence 99999999999999999999999976321000 00123579999999999998853 34679999999999999
Q ss_pred ccccccccCC---CcceeeeCCC--CCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEee
Q 001229 239 QIGDLLDQTQ---RNLEIKDDPK--HGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESW 313 (1119)
Q Consensus 239 ~I~DLL~~~~---~~L~IrEd~~--~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~ 313 (1119)
+|+|||++.. ..+.+++++. +|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++.
T Consensus 158 ~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~ 237 (359)
T 1x88_A 158 ELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMK 237 (359)
T ss_dssp EEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEE
T ss_pred eeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEe
Confidence 9999998754 4689999984 7899999999999999999999999999999999999999999999999999876
Q ss_pred ecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccc
Q 001229 314 CKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLL 393 (1119)
Q Consensus 314 ~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLL 393 (1119)
.... .+......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|++ +..|||||||||||||
T Consensus 238 ~~~~--~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lL 311 (359)
T 1x88_A 238 ETTI--DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRIL 311 (359)
T ss_dssp EECT--TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHT
T ss_pred cccC--CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhc----CCCCCccccchHHHHH
Confidence 5432 222334689999999999999999999999999999999999999999999986 4579999999999999
Q ss_pred cccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhccccccccccc
Q 001229 394 RESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINE 440 (1119)
Q Consensus 394 qDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe 440 (1119)
||+|||||+|+|||||||+..+++||++||+||+|||+|+|+|++|+
T Consensus 312 qdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 312 QDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp GGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred HHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 99999999999999999999999999999999999999999999997
No 12
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=8.3e-85 Score=740.18 Aligned_cols=338 Identities=37% Similarity=0.574 Sum_probs=275.0
Q ss_pred CCCCCceeEeeeCCCCccccc--CCCeEEEeCCCceee-------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcC
Q 001229 92 VSDPSVKVVVRIRPANDLERD--SNQTVKKVSSDSLAV-------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAG 162 (1119)
Q Consensus 92 ~~~~~VkVvVRVRP~~~~E~~--~~~~v~~~s~~~l~v-------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~G 162 (1119)
...++|+|+|||||++..|.. ...++.......+.+ ..+.|+||+||+++++|++||+.++.|+|+++|+|
T Consensus 20 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G 99 (373)
T 2wbe_C 20 KSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNG 99 (373)
T ss_dssp CCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCC
Confidence 456789999999999988743 223333333333332 24789999999999999999999999999999999
Q ss_pred CCcceeeeccccccccccccCCCCCCCC-CCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccc
Q 001229 163 YNVSLLSYGQTGSGKTYTMWGPPSAMVE-DPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIG 241 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM~G~~~~~~~-~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~ 241 (1119)
||+||||||||||||||||+|+...... ......++|||||++++||..+... ...|.|+|||+|||||+|+
T Consensus 100 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-------~~~~~v~vS~~EIYnE~i~ 172 (373)
T 2wbe_C 100 YNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-------EVEYTMRISYLELYNEELC 172 (373)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-------CSCEEEEEEEEEEETTEEE
T ss_pred ceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-------CceEEEEEEEEEEeCCeEE
Confidence 9999999999999999999997642211 1123457899999999999999753 2469999999999999999
Q ss_pred cccccCC-CcceeeeCC--CCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccC
Q 001229 242 DLLDQTQ-RNLEIKDDP--KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEAS 318 (1119)
Q Consensus 242 DLL~~~~-~~L~IrEd~--~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~ 318 (1119)
|||++.. ..+.+++|+ .++++|.||+++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|++.....
T Consensus 173 DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~- 251 (373)
T 2wbe_C 173 DLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI- 251 (373)
T ss_dssp ESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCT-
T ss_pred ECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCC-
Confidence 9998654 468888885 568999999999999999999999999999999999999999999999999998754321
Q ss_pred CCcccCccccceeEEecCCCCCCCCcccc-ccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccC
Q 001229 319 SKCFSSSKTSRICLVDIAGADRNKLDDVG-RKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESL 397 (1119)
Q Consensus 319 ~~~~~~~~~SrL~LVDLAGSER~~kt~a~-g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSL 397 (1119)
.+......|+|+|||||||||..++++. |.|++|+.+||+||++||+||.+|++ +..|||||||||||||||+|
T Consensus 252 -~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsL 326 (373)
T 2wbe_C 252 -EGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD----RAPHVPYRESKLTRLLQESL 326 (373)
T ss_dssp -TTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHH----CSSCCCGGGCHHHHHTHHHH
T ss_pred -CCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHc----CCCcCccccchHHHHHHHHh
Confidence 2223346799999999999999999887 99999999999999999999999987 45799999999999999999
Q ss_pred CCCceEeEeeecCCCCCcHHHHHHHHHHHHHhccccccccccccc
Q 001229 398 GGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINEIS 442 (1119)
Q Consensus 398 GGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe~~ 442 (1119)
||||+|+|||||||+..+++||++||+||+|||+|+|+|++|+..
T Consensus 327 gGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 327 GGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp HSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 999999999999999999999999999999999999999999853
No 13
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5e-84 Score=729.79 Aligned_cols=322 Identities=33% Similarity=0.533 Sum_probs=253.2
Q ss_pred CCCCCceeEeeeCCCCcccccCC-CeEEEe-CCCce-------------------------eecCeeEEcCeecCCCCCh
Q 001229 92 VSDPSVKVVVRIRPANDLERDSN-QTVKKV-SSDSL-------------------------AVGERKFAFDSVLDSNSNQ 144 (1119)
Q Consensus 92 ~~~~~VkVvVRVRP~~~~E~~~~-~~v~~~-s~~~l-------------------------~v~~k~F~FD~VFd~~asQ 144 (1119)
...++|+|+|||||++..|...+ ..+..+ +...+ ...++.|.||+||+++++|
T Consensus 7 d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q 86 (355)
T 3lre_A 7 DLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQ 86 (355)
T ss_dssp -----CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCH
T ss_pred hccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCCh
Confidence 45688999999999998885332 222221 11111 0123579999999999999
Q ss_pred HHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCce
Q 001229 145 EDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQI 224 (1119)
Q Consensus 145 eeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~ 224 (1119)
++||+.++.|+|+++|+|||+||||||||||||||||+|++ .++|||||++++||..+..... ..
T Consensus 87 ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----------~~~Giipr~~~~lf~~i~~~~~-----~~ 151 (355)
T 3lre_A 87 SEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA----------DEPGVMYLTMLHLYKCMDEIKE-----EK 151 (355)
T ss_dssp HHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCS----------SSBCHHHHHHHHHHHHHHHTTT-----TE
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCC----------CCCCeeehhhhHHHHhhhhhcc-----Cc
Confidence 99999999999999999999999999999999999999975 4689999999999999987532 34
Q ss_pred eEEEEEEEEeeeccccccccccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceE
Q 001229 225 NYQCRCSFLEIYNEQIGDLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHI 304 (1119)
Q Consensus 225 ~fsV~vSylEIYNE~I~DLL~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHa 304 (1119)
.|.|+|||+|||||+|+|||++. .++.+++|+.+|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+
T Consensus 152 ~~~v~vS~~EIYnE~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~ 230 (355)
T 3lre_A 152 ICSTAVSYLEVYNEQIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHA 230 (355)
T ss_dssp EEEEEEEEEEEETTEEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEE
T ss_pred eEEEEEEEEEEECCEEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcE
Confidence 69999999999999999999864 57999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccC
Q 001229 305 VFTFIVESWCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIY 384 (1119)
Q Consensus 305 IFtI~Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPY 384 (1119)
||+|+|++....... ......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++.. ++..||||
T Consensus 231 if~i~v~~~~~~~~~--~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~~~~hiPy 307 (355)
T 3lre_A 231 VFQIYLRQQDKTASI--NQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSK-RKNQHIPY 307 (355)
T ss_dssp EEEEEEEEEETTSCT--TCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC---------CCG
T ss_pred EEEEEEEEecCCCCC--CCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCcCCc
Confidence 999999987654222 234567999999999999999999999999999999999999999999998743 24579999
Q ss_pred CCCcccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhccc
Q 001229 385 RCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSI 432 (1119)
Q Consensus 385 RDSKLTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~I 432 (1119)
|||||||||||+|||||+|+|||||||+..+++||++||+||+|||.|
T Consensus 308 RdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 308 RNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp GGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred ccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999987
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=8.7e-84 Score=725.33 Aligned_cols=330 Identities=31% Similarity=0.522 Sum_probs=261.3
Q ss_pred CCCCCCCceeEeeeCCCCcccccC-CC-eEEEeCC-Cceee-cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCc
Q 001229 90 PEVSDPSVKVVVRIRPANDLERDS-NQ-TVKKVSS-DSLAV-GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNV 165 (1119)
Q Consensus 90 p~~~~~~VkVvVRVRP~~~~E~~~-~~-~v~~~s~-~~l~v-~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~ 165 (1119)
|....++|+|+|||||++..|... .. ++...+. ..+.+ .++.|.||+||+++++|++||+.++.|+|+++|+|||+
T Consensus 6 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~ 85 (344)
T 4a14_A 6 PGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNA 85 (344)
T ss_dssp ---CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEETTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred CCccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEecccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCe
Confidence 345578899999999999887532 22 2322222 22222 46899999999999999999999999999999999999
Q ss_pred ceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccc
Q 001229 166 SLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLD 245 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~ 245 (1119)
||||||||||||||||+|.... .....++|||||++++||..+... ....|.|+|||+|||||+|+|||+
T Consensus 86 tifAYGqTGSGKTyTm~G~~~~----~~~~~~~Giipr~~~~lF~~i~~~------~~~~~~v~vS~~EIYnE~i~DLL~ 155 (344)
T 4a14_A 86 TVFAYGQTGSGKTYTMGEASVA----SLLEDEQGIVPRAMAEAFKLIDEN------DLLDCLVHVSYLEVYKEEFRDLLE 155 (344)
T ss_dssp EEEEESSTTSSHHHHHCC------------CCCCHHHHHHHHHHHHHHHC------TTSEEEEEEEEEEEETTEEEETTS
T ss_pred eEEEecccCCCceEeecccchh----hhhhcccCCchHHHHHHHHhcccc------cceeeEEEEehhhhhHHHHHHHHH
Confidence 9999999999999999997532 112367899999999999999864 245799999999999999999998
Q ss_pred cC--CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCC---C
Q 001229 246 QT--QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASS---K 320 (1119)
Q Consensus 246 ~~--~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~---~ 320 (1119)
+. ...+.|++|+.++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++....... .
T Consensus 156 ~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~ 235 (344)
T 4a14_A 156 VGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRP 235 (344)
T ss_dssp SCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC---------
T ss_pred hccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCc
Confidence 53 467999999999999999999999999999999999999999999999999999999999999987543211 1
Q ss_pred cccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCC
Q 001229 321 CFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGN 400 (1119)
Q Consensus 321 ~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGN 400 (1119)
.......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++.. .+..|||||||||||||||+||||
T Consensus 236 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~~~~hvPyRdSkLT~lLqdsLgGn 314 (344)
T 4a14_A 236 APGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQ-RRGSHIPYRDSKITRILKDSLGGN 314 (344)
T ss_dssp ---CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTT-TTTSCCCGGGCHHHHHTTTSSSTT
T ss_pred cccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCcc-ccCCCCCcchhhHHHHhHhhcCCC
Confidence 1234567999999999999999999999999999999999999999999998743 345799999999999999999999
Q ss_pred ceEeEeeecCCCCCcHHHHHHHHHHHHHhc
Q 001229 401 AKLTVVCNISPDNKDVGEILSTIRFGQRVK 430 (1119)
Q Consensus 401 SkT~mIa~ISPs~~~~eETLsTLrFAsRAK 430 (1119)
|+|+|||||||+..+++||++||+||+|||
T Consensus 315 skt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 315 AKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 999999999999999999999999999996
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.6e-83 Score=723.66 Aligned_cols=322 Identities=38% Similarity=0.650 Sum_probs=256.6
Q ss_pred CCceeEeeeCCCCcccccC-CCeEEEeCCCceee--------------cCeeEEcCeec--------CCCCChHHHHHHh
Q 001229 95 PSVKVVVRIRPANDLERDS-NQTVKKVSSDSLAV--------------GERKFAFDSVL--------DSNSNQEDIFQVV 151 (1119)
Q Consensus 95 ~~VkVvVRVRP~~~~E~~~-~~~v~~~s~~~l~v--------------~~k~F~FD~VF--------d~~asQeeVY~~v 151 (1119)
.+|+|+|||||++..|... ...+..+..+.+.+ ..+.|.||+|| ++.++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 3699999999999888542 23333333332221 24789999999 4568999999999
Q ss_pred hHHHHHHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEE
Q 001229 152 GLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCS 231 (1119)
Q Consensus 152 ~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vS 231 (1119)
+.|+|+++|+|||+||||||||||||||||+|+. .++|||||++++||..+.... .....|.|+||
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----------~~~Giipr~~~~lF~~i~~~~----~~~~~~~v~vS 146 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA----------DQPGLIPRLCSGLFERTQKEE----NEEQSFKVEVS 146 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCS----------SSBCHHHHHHHHHHHHHHHHC----BTTEEEEEEEE
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCC----------CCCchhhHHHHHHHHHHHhhc----ccccceeeece
Confidence 9999999999999999999999999999999975 468999999999999997543 23467999999
Q ss_pred EEeeeccccccccccC--CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEE
Q 001229 232 FLEIYNEQIGDLLDQT--QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFI 309 (1119)
Q Consensus 232 ylEIYNE~I~DLL~~~--~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~ 309 (1119)
|+|||||+|+|||++. ...+.+++++..|++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+
T Consensus 147 ~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~ 226 (354)
T 3gbj_A 147 YMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKIT 226 (354)
T ss_dssp EEEEETTEEEETTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEE
T ss_pred eEEEecCeeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEE
Confidence 9999999999999864 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhcc--CCCCCccCCCC
Q 001229 310 VESWCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETL--GKSEDVIYRCS 387 (1119)
Q Consensus 310 Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~--~k~~hVPYRDS 387 (1119)
|.+..... ..+......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++... ++..|||||||
T Consensus 227 v~~~~~~~-~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdS 305 (354)
T 3gbj_A 227 LTHTLYDV-KSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDS 305 (354)
T ss_dssp EEEEEECT-TSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGS
T ss_pred EEEEeccc-CCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 98764432 1222335679999999999999999999999999999999999999999999997542 35689999999
Q ss_pred cccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcc
Q 001229 388 CLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKS 431 (1119)
Q Consensus 388 KLTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~ 431 (1119)
||||||||+|||||+|+|||||||+..+++|||+|||||.||+.
T Consensus 306 kLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 306 VLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999985
No 16
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-82 Score=712.15 Aligned_cols=315 Identities=34% Similarity=0.541 Sum_probs=267.8
Q ss_pred CCCceeEeeeCCCCcccccCC--CeEEEe--CCCc-eee----cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCC
Q 001229 94 DPSVKVVVRIRPANDLERDSN--QTVKKV--SSDS-LAV----GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYN 164 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~E~~~~--~~v~~~--s~~~-l~v----~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN 164 (1119)
.++|+|+|||||++..|.... ..+..+ ..+. +.+ ..+.|.||+||+++++|++||+.+ .|+|+++|+|||
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n 81 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGFN 81 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHTTCC
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhCCCE
Confidence 578999999999998875332 112222 2222 221 246899999999999999999985 799999999999
Q ss_pred cceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeecccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLL 244 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL 244 (1119)
+||||||||||||||||+|++ .++|||||++++||..+.... ....|.|+|||+|||||+|+|||
T Consensus 82 ~tifAYGqTGSGKTyTm~G~~----------~~~Giipr~~~~lF~~i~~~~-----~~~~~~v~vS~~EIYnE~i~DLL 146 (330)
T 2h58_A 82 VCIFAYGQTGAGKTYTMEGTA----------ENPGINQRALQLLFSEVQEKA-----SDWEYTITVSAAEIYNEVLRDLL 146 (330)
T ss_dssp EEEEEESSTTSSHHHHHTBCS----------SSBCHHHHHHHHHHHHHHTSC-----TTEEEEEEEEEEEEETTEEEETT
T ss_pred EEEEeECCCCCCCcEEEecCC----------CCCcHHHHHHHHHHHhhhccc-----CCceEEEEEEEEEEECCChhhcc
Confidence 999999999999999999975 468999999999999997532 34679999999999999999999
Q ss_pred ccCC-Cc--ceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCc
Q 001229 245 DQTQ-RN--LEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKC 321 (1119)
Q Consensus 245 ~~~~-~~--L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~ 321 (1119)
++.. .. +++++|+.++++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++.....
T Consensus 147 ~~~~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---- 222 (330)
T 2h58_A 147 GKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST---- 222 (330)
T ss_dssp SCSSCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT----
T ss_pred cccccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCC----
Confidence 8643 33 4455688899999999999999999999999999999999999999999999999999998865431
Q ss_pred ccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCc
Q 001229 322 FSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNA 401 (1119)
Q Consensus 322 ~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNS 401 (1119)
.....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ +..|||||||||||||||+|||||
T Consensus 223 -~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~----~~~hvPyRdSkLT~lL~dsLgGns 297 (330)
T 2h58_A 223 -GLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS----RQGHVPFRNSKLTYLLQDSLSGDS 297 (330)
T ss_dssp -TEEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTHHHHSTTC
T ss_pred -CcEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhc----CCCCCcccccHHHHHHHHHhCCCc
Confidence 234689999999999999999999999999999999999999999999986 457999999999999999999999
Q ss_pred eEeEeeecCCCCCcHHHHHHHHHHHHHhcccc
Q 001229 402 KLTVVCNISPDNKDVGEILSTIRFGQRVKSIR 433 (1119)
Q Consensus 402 kT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik 433 (1119)
+|+|||||||+..+++||++||+||+|||+|+
T Consensus 298 ~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 298 KTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred eEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999986
No 17
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=2.5e-82 Score=714.60 Aligned_cols=320 Identities=33% Similarity=0.528 Sum_probs=257.6
Q ss_pred CCCceeEeeeCCCCcccccCCCeEEEe--CC----Cceee-------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHH
Q 001229 94 DPSVKVVVRIRPANDLERDSNQTVKKV--SS----DSLAV-------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNAL 160 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~E~~~~~~v~~~--s~----~~l~v-------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL 160 (1119)
.|+|+|+|||||++..|......+... .. ..+.+ ..+.|.||+||+++++|++||+.+ .|+|+++|
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~l 82 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSSL 82 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGGG
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHHHHHHH
Confidence 578999999999998875443322211 11 01111 236899999999999999999985 59999999
Q ss_pred cCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeecccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQI 240 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I 240 (1119)
+|||+||||||||||||||||+|+. +|||||++++||..+..... ..+.|.|+|||+|||||+|
T Consensus 83 ~G~n~tifAYGqTGSGKTyTm~g~~------------~Giipr~~~~lF~~~~~~~~----~~~~~~v~vS~~EIYnE~i 146 (349)
T 3t0q_A 83 DGYNVCIFAYGQTGSGKTYTMLNAG------------DGMIPMTLSHIFKWTANLKE----RGWNYEMECEYIEIYNETI 146 (349)
T ss_dssp TTCEEEEEEECSTTSSHHHHHHSTT------------TSHHHHHHHHHHHHHHHHGG----GTEEEEEEEEEEEEETTEE
T ss_pred CCcceeEEEeCCCCCCCceEeCCCC------------CchhhHHHHHHHHHHHHhhh----cCceeEEEEEEEEEEcchh
Confidence 9999999999999999999999943 59999999999999987543 3468999999999999999
Q ss_pred ccccccC-----------CCcceeeeCCC-CCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEE
Q 001229 241 GDLLDQT-----------QRNLEIKDDPK-HGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTF 308 (1119)
Q Consensus 241 ~DLL~~~-----------~~~L~IrEd~~-~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI 308 (1119)
+|||++. ...+.|++++. +|++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|
T Consensus 147 ~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 226 (349)
T 3t0q_A 147 LDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMV 226 (349)
T ss_dssp EETTC---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEE
T ss_pred hccccccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEE
Confidence 9999753 24677887764 57999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCc
Q 001229 309 IVESWCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSC 388 (1119)
Q Consensus 309 ~Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSK 388 (1119)
+|++..... .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++... +..||||||||
T Consensus 227 ~v~~~~~~~-----~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~-~~~hiPyRdSk 300 (349)
T 3t0q_A 227 HINGRNLHT-----GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA-GKRYIPFRNSK 300 (349)
T ss_dssp EEEEEETTT-----CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTG-GGSCCCGGGSH
T ss_pred EEEEEecCC-----CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccC-CCCcCCCcCCH
Confidence 999875432 234579999999999999999999999999999999999999999999987432 34699999999
Q ss_pred ccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhccccccc
Q 001229 389 LTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDP 436 (1119)
Q Consensus 389 LTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p 436 (1119)
|||||||+|||||+|+|||||||+..+++||++||+||+|++.|+..+
T Consensus 301 LT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 301 LTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp HHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999999999999999999998654
No 18
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2.4e-82 Score=714.15 Aligned_cols=321 Identities=34% Similarity=0.536 Sum_probs=261.9
Q ss_pred CCCceeEeeeCCCCc-ccccCCCeEEEeC--C----Cceee-------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHH
Q 001229 94 DPSVKVVVRIRPAND-LERDSNQTVKKVS--S----DSLAV-------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNA 159 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~-~E~~~~~~v~~~s--~----~~l~v-------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~v 159 (1119)
.++|+|+|||||++. .|......+.... . ..+.+ ..+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 80 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 80 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence 478999999999987 3422222222111 1 11222 236899999999999999999985 5999999
Q ss_pred HcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQ 239 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~ 239 (1119)
|+|||+||||||||||||||||+|+ .+|||||++++||..|..... ..+.|.|+|||+|||||+
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~------------~~Giipr~~~~lF~~i~~~~~----~~~~~~v~vS~~EIYnE~ 144 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNP------------GDGIIPSTISHIFNWINKLKT----KGWDYKVNCEFIEIYNEN 144 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHST------------TTSHHHHHHHHHHHHHHHHGG----GTCEEEEEEEEEEEETTE
T ss_pred cCCceeEEEEECCCCCCCcEeccCC------------CCCchHHHHHHHHHHHHhhhh----cCCceEEEEEEEEEECCe
Confidence 9999999999999999999999994 369999999999999987543 245799999999999999
Q ss_pred cccccccCCC---------cceeeeCC-CCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEE
Q 001229 240 IGDLLDQTQR---------NLEIKDDP-KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFI 309 (1119)
Q Consensus 240 I~DLL~~~~~---------~L~IrEd~-~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~ 309 (1119)
|+|||++... .+.+++++ .++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+
T Consensus 145 i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~ 224 (347)
T 1f9v_A 145 IVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIH 224 (347)
T ss_dssp EEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEE
T ss_pred eeeccCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEE
Confidence 9999986543 46788764 5789999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcc
Q 001229 310 VESWCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCL 389 (1119)
Q Consensus 310 Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKL 389 (1119)
|.+..... .....|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|++.. ++..|||||||||
T Consensus 225 v~~~~~~~-----~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~~~~hiPyRdSkL 298 (347)
T 1f9v_A 225 LSGSNAKT-----GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD-STKRHIPFRNSKL 298 (347)
T ss_dssp EEEECC-------CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCCCGGGSHH
T ss_pred EEEecCCC-----CceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhccc-CCCCcCccccCHH
Confidence 98764321 23467999999999999999999999999999999999999999999998643 2347999999999
Q ss_pred cccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccc
Q 001229 390 THLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPV 437 (1119)
Q Consensus 390 TrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~ 437 (1119)
||||||+|||||+|+|||||||+..+++||++||+||+|+++|+..+.
T Consensus 299 T~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp HHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred HHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999999999999999999999998764
No 19
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-82 Score=718.78 Aligned_cols=319 Identities=33% Similarity=0.568 Sum_probs=253.7
Q ss_pred CCCCceeEeeeCCCCccccc------CCCeEEEeCCCce-------eecCeeEEcCeecCCCCChHHHHHHhhHHHHHHH
Q 001229 93 SDPSVKVVVRIRPANDLERD------SNQTVKKVSSDSL-------AVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNA 159 (1119)
Q Consensus 93 ~~~~VkVvVRVRP~~~~E~~------~~~~v~~~s~~~l-------~v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~v 159 (1119)
..++|+|+|||||+++.+.+ ....+........ ....+.|.||+||+ +++|++||+.++.|+|+++
T Consensus 22 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~ 100 (359)
T 3nwn_A 22 TRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQA 100 (359)
T ss_dssp --CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHH
T ss_pred CCCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHHH
Confidence 46789999999999876532 1222222211111 01235799999997 6899999999999999999
Q ss_pred HcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQ 239 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~ 239 (1119)
|+|||+||||||||||||||||+|+... ..++|||||++++||+.+.... ...|.|+|||+|||||+
T Consensus 101 l~G~N~tifAYGQTGSGKTyTM~G~~~~-------~~~~Giipra~~~lF~~~~~~~------~~~~~v~vS~~EIYnE~ 167 (359)
T 3nwn_A 101 LDGYNGTIMCYGQTGAGKTYTMMGATEN-------YKHRGILPRALQQVFRMIEERP------THAITVRVSYLEIYNES 167 (359)
T ss_dssp HTTCCEEEEEEESTTSSHHHHHTBCSSC-------GGGBCHHHHHHHHHHHHHHTCT------TSCEEEEEEEEEEETTE
T ss_pred hCCCCEEEEEeCCCCCCccEEeCCccCC-------ccchhhHHHHHHHHHHHhhcCC------CCcEEEEEEEEEEeccc
Confidence 9999999999999999999999997532 2568999999999999987543 34699999999999999
Q ss_pred cccccccC------CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEee
Q 001229 240 IGDLLDQT------QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESW 313 (1119)
Q Consensus 240 I~DLL~~~------~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~ 313 (1119)
|+|||++. ...+.+++++ .|++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 168 i~DLL~~~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~ 246 (359)
T 3nwn_A 168 LFDLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAH 246 (359)
T ss_dssp EEETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC
T ss_pred cccccccccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEee
Confidence 99999743 3457788876 5799999999999999999999999999999999999999999999999999876
Q ss_pred ecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccc
Q 001229 314 CKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLL 393 (1119)
Q Consensus 314 ~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLL 393 (1119)
..... ......|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|++ ++..|||||||||||||
T Consensus 247 ~~~~~---~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~---~~~~hVPYRdSkLT~lL 320 (359)
T 3nwn_A 247 SRTLS---EEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGD---QKRDHIPFRQCKLTHAL 320 (359)
T ss_dssp ----------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC--------CCGGGSHHHHHT
T ss_pred ccccc---CcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHh---cCCCcCCcccCHHHHHH
Confidence 54321 1235679999999999999999999999999999999999999999999986 34579999999999999
Q ss_pred cccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhccc
Q 001229 394 RESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSI 432 (1119)
Q Consensus 394 qDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~I 432 (1119)
||+|||||+|+|||||||+..+++||++||+||+|||.|
T Consensus 321 qdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 321 KDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp HHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999987
No 20
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.8e-82 Score=716.50 Aligned_cols=320 Identities=33% Similarity=0.497 Sum_probs=248.2
Q ss_pred CCCCceeEeeeCCCCcccccCCC--eEEE-------eCCCcee-----------------ecCeeEEcCeecCCCCChHH
Q 001229 93 SDPSVKVVVRIRPANDLERDSNQ--TVKK-------VSSDSLA-----------------VGERKFAFDSVLDSNSNQED 146 (1119)
Q Consensus 93 ~~~~VkVvVRVRP~~~~E~~~~~--~v~~-------~s~~~l~-----------------v~~k~F~FD~VFd~~asQee 146 (1119)
..++|+|+|||||++..|..... .+.. .....+. ...+.|+||+||+++++|++
T Consensus 20 ~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~ 99 (376)
T 2rep_A 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDE 99 (376)
T ss_dssp ---CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHH
T ss_pred cCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchh
Confidence 46889999999999988754321 1000 0111111 11357999999999999999
Q ss_pred HHHHhhHHHHHHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeE
Q 001229 147 IFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINY 226 (1119)
Q Consensus 147 VY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~f 226 (1119)
||+.++ |+|+++|+|||+||||||||||||||||+|+... ....+|||||++++||..+..... ....|
T Consensus 100 Vy~~v~-~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~------~~~~~Giipr~~~~lF~~i~~~~~----~~~~~ 168 (376)
T 2rep_A 100 VFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG------DPQLEGLIPRALRHLFSVAQELSG----QGWTY 168 (376)
T ss_dssp HHHHHH-HHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSC------CGGGBCHHHHHHHHHHHHHHHGGG----GTEEE
T ss_pred hhhhHH-HHHHHhcCCCceEEEEeCCCCCCCceEeecCCCC------CcccCCcHHHHHHHHHHHHHHhhc----CCeEE
Confidence 999865 8999999999999999999999999999997531 235689999999999999986532 34689
Q ss_pred EEEEEEEeeeccccccccccC-----CCcceeeeC--CCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCC
Q 001229 227 QCRCSFLEIYNEQIGDLLDQT-----QRNLEIKDD--PKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKS 299 (1119)
Q Consensus 227 sV~vSylEIYNE~I~DLL~~~-----~~~L~IrEd--~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~S 299 (1119)
.|+|||+|||||+|+|||++. ...+.++++ +.++++|.|++++.|.+++|++.+|..|.++|++++|.||..|
T Consensus 169 ~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~S 248 (376)
T 2rep_A 169 SFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERS 248 (376)
T ss_dssp EEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CG
T ss_pred EEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCC
Confidence 999999999999999999864 246889988 6789999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEEEeeecccCCCcccCccccceeEEecCCCCCCCCccccc----cchHhhhHhhHHHHHHHHHHHHHhhhc
Q 001229 300 SRSHIVFTFIVESWCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGR----KSVKEGKYVKKSLAQLGYLVKALTQET 375 (1119)
Q Consensus 300 SRSHaIFtI~Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g----~rlkEg~~INkSLsaLG~VI~ALse~~ 375 (1119)
||||+||+|+|++..... .....|+|+|||||||||.+++++.| .|++|+.+||+||++||+||.+|++
T Consensus 249 SRSH~Ifti~v~~~~~~~-----~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~-- 321 (376)
T 2rep_A 249 SRSHSVFQLQISGEHSSR-----GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSN-- 321 (376)
T ss_dssp GGSEEEEEEEEEEEESSS-----CCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHT--
T ss_pred CCceEEEEEEEEEEecCC-----CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhc--
Confidence 999999999998765432 23457999999999999999999999 9999999999999999999999986
Q ss_pred cCCCCCccCCCCcccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhccc
Q 001229 376 LGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSI 432 (1119)
Q Consensus 376 ~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~I 432 (1119)
+..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 322 --~~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 322 --KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp --TCSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred --CCCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 4679999999999999999999999999999999999999999999999999863
No 21
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=9.5e-82 Score=716.58 Aligned_cols=320 Identities=31% Similarity=0.464 Sum_probs=251.5
Q ss_pred CCCCceeEeeeCCCCcccccCC-CeEEEeC-CCcee-------------ecCeeEEcCeecCCCCChHHHHHHhhHHHHH
Q 001229 93 SDPSVKVVVRIRPANDLERDSN-QTVKKVS-SDSLA-------------VGERKFAFDSVLDSNSNQEDIFQVVGLPLVK 157 (1119)
Q Consensus 93 ~~~~VkVvVRVRP~~~~E~~~~-~~v~~~s-~~~l~-------------v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~ 157 (1119)
.+++|+|+|||||++..|...+ ..+..+. .+.+. ...+.|+||+||+++++|++||+.++.|+|+
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~ 128 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 128 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHH
Confidence 4789999999999998875432 2222222 22221 1346899999999999999999999999999
Q ss_pred HHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeec
Q 001229 158 NALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYN 237 (1119)
Q Consensus 158 ~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYN 237 (1119)
++|+|||+||||||||||||||||+|+... ......+|||||++++||..+..... ....|.|+|||+||||
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~----~~~~~~~Giipr~~~~lF~~~~~~~~----~~~~~~V~vS~~EIYn 200 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMGGDLSG----KAQNASKGIYAMASRDVFLLKNQPCY----RKLGLEVYVTFFEIYN 200 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC---------------CCHHHHHHHHHHHHHTSHHH----HTTTCEEEEEEEEEET
T ss_pred HHhcCCceEEEEecCCCCCCCeEeccCCCC----CCcccCCceehhhHHHHHHHhhcccc----cCceEEEEEEEEEecC
Confidence 999999999999999999999999996431 12235789999999999999864322 1246999999999999
Q ss_pred cccccccccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeeccc
Q 001229 238 EQIGDLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEA 317 (1119)
Q Consensus 238 E~I~DLL~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~ 317 (1119)
|+|+|||++. ..+.|++|+.+|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++.
T Consensus 201 E~v~DLL~~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~---- 275 (387)
T 2heh_A 201 GKLFDLLNKK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK---- 275 (387)
T ss_dssp TEEEETTTTT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS----
T ss_pred CeEEECCCCC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC----
Confidence 9999999864 57999999999999999999999999999999999999999999999999999999999999753
Q ss_pred CCCcccCccccceeEEecCCCCCCCCcc-ccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCccccccccc
Q 001229 318 SSKCFSSSKTSRICLVDIAGADRNKLDD-VGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRES 396 (1119)
Q Consensus 318 ~~~~~~~~~~SrL~LVDLAGSER~~kt~-a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDS 396 (1119)
....|+|+|||||||||..+++ +.+.+++|+.+||+||++||+||.+|++ +..|||||||||||||||+
T Consensus 276 ------~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~----~~~hvPYRdSKLTrlLqds 345 (387)
T 2heh_A 276 ------GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDS 345 (387)
T ss_dssp ------SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTGGG
T ss_pred ------CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhc----CCCCCCccccHHHHHHhhh
Confidence 1257899999999999998775 5678889999999999999999999986 4579999999999999999
Q ss_pred -CCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccc
Q 001229 397 -LGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRND 435 (1119)
Q Consensus 397 -LGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~ 435 (1119)
|||||+|+|||||||+..+++||++||+||+|||+|++.
T Consensus 346 llGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 346 FIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp GSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred ccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 699999999999999999999999999999999999864
No 22
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.2e-81 Score=711.15 Aligned_cols=322 Identities=28% Similarity=0.428 Sum_probs=266.5
Q ss_pred CceeEeeeCCCCcccccCC--CeEEEeCCCceee-------------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHH
Q 001229 96 SVKVVVRIRPANDLERDSN--QTVKKVSSDSLAV-------------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNAL 160 (1119)
Q Consensus 96 ~VkVvVRVRP~~~~E~~~~--~~v~~~s~~~l~v-------------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL 160 (1119)
+|+|+|||||++..|...+ .++...+...+.+ ..+.|.||+||+++++|++||+.++.|+|+++|
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 5899999999998875432 2233223333222 246899999999999999999999999999999
Q ss_pred c-CCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccc
Q 001229 161 A-GYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQ 239 (1119)
Q Consensus 161 ~-GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~ 239 (1119)
. |||+||||||||||||||||+|+... .....+|||||++++||..+..... ...|.|+|||+|||||+
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~-----~~~~~~Giipr~~~~lF~~i~~~~~-----~~~~~v~vS~~EIYnE~ 150 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPY-----GQSDTPGIFQYAAGDIFTFLNIYDK-----DNTKGIFISFYEIYCGK 150 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSST-----TTSSCBCHHHHHHHHHHHHHHHHCS-----SSCEEEEEEEEEEETTE
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCC-----CCccCCCcHHHHHHHHHHHHHhhcc-----CCceEEEEEEEEeeCCe
Confidence 5 99999999999999999999997531 1235789999999999999976432 34689999999999999
Q ss_pred cccccccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCC
Q 001229 240 IGDLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASS 319 (1119)
Q Consensus 240 I~DLL~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~ 319 (1119)
|+|||++. ..+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+...
T Consensus 151 v~DLL~~~-~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~---- 225 (360)
T 1ry6_A 151 LYDLLQKR-KMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK---- 225 (360)
T ss_dssp EEESCCC------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT----
T ss_pred eEEcccCC-ccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC----
Confidence 99999864 4578899999999999999999999999999999999999999999999999999999999986321
Q ss_pred CcccCccccceeEEecCCCCCCCCccccc-cchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCC
Q 001229 320 KCFSSSKTSRICLVDIAGADRNKLDDVGR-KSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLG 398 (1119)
Q Consensus 320 ~~~~~~~~SrL~LVDLAGSER~~kt~a~g-~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLG 398 (1119)
....|+|+|||||||||..++++.+ .+++|+.+||+||++||+||.+|+. +..|||||||||||||||+||
T Consensus 226 ----~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLg 297 (360)
T 1ry6_A 226 ----NTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS----DKNHIPFRDSELTKVLRDIFV 297 (360)
T ss_dssp ----TEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTT----STTSCCGGGCHHHHHTGGGGS
T ss_pred ----CcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhc----CCCCCccccCHHHHHHHHHhC
Confidence 2357899999999999999998865 5789999999999999999999975 457999999999999999999
Q ss_pred CCceEeEeeecCCCCCcHHHHHHHHHHHHHhccccccccccc
Q 001229 399 GNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPVINE 440 (1119)
Q Consensus 399 GNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~vNe 440 (1119)
|||+|+|||||||+..+++||++||+||+|||+|+|.|+.|.
T Consensus 298 Gnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 298 GKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp SSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---------
T ss_pred CCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 999999999999999999999999999999999999666554
No 23
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1.9e-81 Score=718.23 Aligned_cols=322 Identities=31% Similarity=0.463 Sum_probs=256.3
Q ss_pred CCCCceeEeeeCCCCcccccCC-CeEEEeC-CCcee-------------ecCeeEEcCeecCCCCChHHHHHHhhHHHHH
Q 001229 93 SDPSVKVVVRIRPANDLERDSN-QTVKKVS-SDSLA-------------VGERKFAFDSVLDSNSNQEDIFQVVGLPLVK 157 (1119)
Q Consensus 93 ~~~~VkVvVRVRP~~~~E~~~~-~~v~~~s-~~~l~-------------v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~ 157 (1119)
.+++|+|+|||||++..|...+ ..+..+. .+.+. ...+.|+||+||+++++|++||+.++.|+|+
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~ 148 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 148 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHH
Confidence 4788999999999998875322 2222222 22221 1246899999999999999999999999999
Q ss_pred HHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeec
Q 001229 158 NALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYN 237 (1119)
Q Consensus 158 ~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYN 237 (1119)
++|+|||+||||||||||||||||+|+... ......+|||||++++||..+..... ....|.|+|||+||||
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~----~~~~~~~Giipra~~~lF~~~~~~~~----~~~~~~V~vS~lEIYn 220 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTMGGDLSG----KSQNASKGIYAMASRDVFLLKNQPRY----RNLNLEVYVTFFEIYN 220 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHHCBC--------CBGGGSHHHHHHHHHHHHHTSHHH----HTTCCEEEEEEEEEET
T ss_pred HHhcCCceeEEeecCCCCCCCeEeecCCCC----CCccccCcchhhhHHHHHHHHhhhcc----cCccEEEEEEEEEeeC
Confidence 999999999999999999999999996421 12235689999999999999864321 1346999999999999
Q ss_pred cccccccccCCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeeccc
Q 001229 238 EQIGDLLDQTQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEA 317 (1119)
Q Consensus 238 E~I~DLL~~~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~ 317 (1119)
|+|+|||++. ..+.|++|+.+|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.
T Consensus 221 E~i~DLL~~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~---- 295 (410)
T 1v8k_A 221 GKVFDLLNKK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK---- 295 (410)
T ss_dssp TEEEETTTTT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS----
T ss_pred CEEEECCCCC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC----
Confidence 9999999864 57999999999999999999999999999999999999999999999999999999999999753
Q ss_pred CCCcccCccccceeEEecCCCCCCCCcc-ccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCccccccccc
Q 001229 318 SSKCFSSSKTSRICLVDIAGADRNKLDD-VGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRES 396 (1119)
Q Consensus 318 ~~~~~~~~~~SrL~LVDLAGSER~~kt~-a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDS 396 (1119)
....|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||||+
T Consensus 296 ------~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~----~~~hIPYRdSKLTrLLqds 365 (410)
T 1v8k_A 296 ------GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDS 365 (410)
T ss_dssp ------SSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC----------CCCCHHHHHTTHH
T ss_pred ------CcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhc----CCCCCCcccchhHHHHhhc
Confidence 1257899999999999998776 5678889999999999999999999985 4579999999999999999
Q ss_pred -CCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccc
Q 001229 397 -LGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPV 437 (1119)
Q Consensus 397 -LGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~ 437 (1119)
|||||+|+|||||||+..+++||++||+||+|||.|..+|.
T Consensus 366 llGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 366 FIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp HHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred ccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 59999999999999999999999999999999999987764
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=9.3e-82 Score=711.60 Aligned_cols=320 Identities=33% Similarity=0.573 Sum_probs=254.4
Q ss_pred CCCCCceeEeeeCCCCccccc------CCCeE-EEeCCCce------eecCeeEEcCeecCCCCChHHHHHHhhHHHHHH
Q 001229 92 VSDPSVKVVVRIRPANDLERD------SNQTV-KKVSSDSL------AVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKN 158 (1119)
Q Consensus 92 ~~~~~VkVvVRVRP~~~~E~~------~~~~v-~~~s~~~l------~v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~ 158 (1119)
...|+|+|+|||||+...+.+ ....+ .....+.. ....+.|.||+||+ +++|++||+.++.|+|++
T Consensus 20 ~~~g~IrV~vRvRP~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~lv~~ 98 (358)
T 2nr8_A 20 GTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQ 98 (358)
T ss_dssp ---CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCCccceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHHHHHH
Confidence 457899999999998754321 11111 11111110 01236799999995 899999999999999999
Q ss_pred HHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeecc
Q 001229 159 ALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNE 238 (1119)
Q Consensus 159 vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE 238 (1119)
+|+|||+||||||||||||||||+|+... ...+|||||++++||..|+... ...|.|+|||+|||||
T Consensus 99 ~l~G~N~tIfAYGqTGSGKTyTM~G~~~~-------~~~~Giipra~~~lF~~i~~~~------~~~~~v~vS~~EIYnE 165 (358)
T 2nr8_A 99 ALDGYNGTIMCYGQTGAGKTYTMMGATEN-------YKHRGILPRALQQVFRMIEERP------THAITVRVSYLEIYNE 165 (358)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCSSC-------GGGBCHHHHHHHHHHHHHHTCT------TSCEEEEEEEEEEETT
T ss_pred HhCCCceEEEEECCCCCCCceEecccccc-------cccCCcHHHHHHHHHHHHhhcC------CceEEEEEEEEEEeCC
Confidence 99999999999999999999999997632 2468999999999999997643 2369999999999999
Q ss_pred cccccccc------CCCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEe
Q 001229 239 QIGDLLDQ------TQRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVES 312 (1119)
Q Consensus 239 ~I~DLL~~------~~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq 312 (1119)
+|+|||++ ...++.+++++ .|++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++
T Consensus 166 ~i~DLL~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~ 244 (358)
T 2nr8_A 166 SLFDLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEA 244 (358)
T ss_dssp EEEETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEE
T ss_pred eeeECcCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEE
Confidence 99999985 34579999998 789999999999999999999999999999999999999999999999999987
Q ss_pred eecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCccccc
Q 001229 313 WCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHL 392 (1119)
Q Consensus 313 ~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrL 392 (1119)
....... .....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ ++..||||||||||+|
T Consensus 245 ~~~~~~~---~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~---~~~~hiPyRdSkLT~L 318 (358)
T 2nr8_A 245 HSRTLSE---EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGD---QKRDHIPFRQCKLTHA 318 (358)
T ss_dssp C----------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC--------CCGGGSHHHHH
T ss_pred EeccCCC---CCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHh---CCCCcCCCccCHHHHH
Confidence 6543211 234579999999999999999999999999999999999999999999986 3457999999999999
Q ss_pred ccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhccc
Q 001229 393 LRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSI 432 (1119)
Q Consensus 393 LqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~I 432 (1119)
|||+|||||+|+|||||||+..+++||++||+||+|||.|
T Consensus 319 LqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 319 LKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp THHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999986
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-81 Score=713.83 Aligned_cols=321 Identities=34% Similarity=0.542 Sum_probs=267.2
Q ss_pred CCCceeEeeeCCCCcc-cccCCCeEEE--eCCC----ceee-------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHH
Q 001229 94 DPSVKVVVRIRPANDL-ERDSNQTVKK--VSSD----SLAV-------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNA 159 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~-E~~~~~~v~~--~s~~----~l~v-------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~v 159 (1119)
.|+|+|+|||||+... +......+.. .... .+.+ ..+.|.||+||+++++|++||+.++ |+|+++
T Consensus 58 kgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~-~lv~~~ 136 (403)
T 4etp_A 58 RGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQSS 136 (403)
T ss_dssp HCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHHH-HHHHHH
Confidence 5789999999998766 3222222211 1111 1111 2368999999999999999999865 899999
Q ss_pred HcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQ 239 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~ 239 (1119)
|+|||+||||||||||||||||+|+. +|||||++++||..|..... ..+.|.|+|||+|||||+
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM~g~~------------~Giipr~~~~lF~~i~~~~~----~~~~~~v~vS~~EIYnE~ 200 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTMLNPG------------DGIIPSTISHIFNWINKLKT----KGWDYKVNAEFIEIYNEN 200 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHHHCTT------------TSHHHHHHHHHHHHHHHHHT----TTEEEEEEEEEEEEETTE
T ss_pred hCCcceEEEEECCCCCCCceEeCCCC------------CccchhHHHHHHHHHHhhhc----cCceEEEEEEEEEEecce
Confidence 99999999999999999999999943 59999999999999987542 356899999999999999
Q ss_pred cccccccCC---------CcceeeeCC-CCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEE
Q 001229 240 IGDLLDQTQ---------RNLEIKDDP-KHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFI 309 (1119)
Q Consensus 240 I~DLL~~~~---------~~L~IrEd~-~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~ 309 (1119)
|+|||++.. ..+.+++++ .++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+
T Consensus 201 i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~ 280 (403)
T 4etp_A 201 IVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIH 280 (403)
T ss_dssp EEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEE
T ss_pred eeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEE
Confidence 999997643 346777776 4579999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcc
Q 001229 310 VESWCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCL 389 (1119)
Q Consensus 310 Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKL 389 (1119)
|.+..... .....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|++.. ++..|||||||||
T Consensus 281 v~~~~~~~-----~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~~~~hiPyRdSkL 354 (403)
T 4etp_A 281 LSGSNAKT-----GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPD-STKRHIPFRNSKL 354 (403)
T ss_dssp EEEEETTT-----CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSC-TTTSCCCGGGSHH
T ss_pred EEEeecCC-----CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCcCCcccchH
Confidence 98865432 22357899999999999999999999999999999999999999999998743 2346999999999
Q ss_pred cccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccc
Q 001229 390 THLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPV 437 (1119)
Q Consensus 390 TrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~ 437 (1119)
||||||+|||||+|+|||||||+..+++||++||+||+|++.|+..|.
T Consensus 355 T~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 355 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp HHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999999999999999999999999999988764
No 26
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.2e-80 Score=699.40 Aligned_cols=318 Identities=32% Similarity=0.454 Sum_probs=250.1
Q ss_pred CCCCCceeEeeeCCCCcccccCCCeEEEeC----CCceeecCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcce
Q 001229 92 VSDPSVKVVVRIRPANDLERDSNQTVKKVS----SDSLAVGERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSL 167 (1119)
Q Consensus 92 ~~~~~VkVvVRVRP~~~~E~~~~~~v~~~s----~~~l~v~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tI 167 (1119)
...++|+|+|||||++..+......+.... ...+.+..+.|.||+||+++++|++||+.++.|+|+++|+|||+||
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~ti 98 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTA 98 (344)
T ss_dssp CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEE
T ss_pred CCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEE
Confidence 446789999999999877654444444432 3456678899999999999999999999999999999999999999
Q ss_pred eeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccccccccC
Q 001229 168 LSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIGDLLDQT 247 (1119)
Q Consensus 168 fAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~DLL~~~ 247 (1119)
||||||||||||||+|.... ......+|||||++++||..|...... ....|.|+|||+|||||+|+|||++.
T Consensus 99 fAYGQTGSGKTyTM~g~~~~----~~~~~~~GIipra~~~LF~~i~~~~~~---~~~~~~v~vS~~EIYnE~i~DLL~~~ 171 (344)
T 3dc4_A 99 LAYGQTGTGKSYSMGMTPPG----EILPEHLGILPRALGDIFERVTARQEN---NKDAIQVYASFIEIYNEKPFDLLGST 171 (344)
T ss_dssp EEESSTTSSHHHHHTCSCGG----GSCGGGCCHHHHHHHHHHHHHHHSSSS---CSSCCEEEEEEEEEESSCEEETTSSC
T ss_pred EEecCCCCCCCeEEcCCCCC----CCCcccCCcHHHHHHHHHHHHHhhhhc---cccceEEEEEEEEEeCCeeEEccCCC
Confidence 99999999999999986531 112357899999999999999865432 23469999999999999999999865
Q ss_pred CCcceeeeCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcccCccc
Q 001229 248 QRNLEIKDDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCFSSSKT 327 (1119)
Q Consensus 248 ~~~L~IrEd~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~~~~~~ 327 (1119)
..... .+..+.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++. ...
T Consensus 172 ~~~~~------~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-----------~~~ 234 (344)
T 3dc4_A 172 PHMPM------VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK-----------THH 234 (344)
T ss_dssp TTSBC------CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS-----------SCE
T ss_pred CCCcc------ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec-----------CcE
Confidence 43221 1233568999999999999999999999999999999999999999999999642 247
Q ss_pred cceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEee
Q 001229 328 SRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVC 407 (1119)
Q Consensus 328 SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa 407 (1119)
|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+. +..|||||||||||||||+|||||+|+|||
T Consensus 235 skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~----~~~hiPyRdSkLT~lLqdsLgGnskt~mIa 310 (344)
T 3dc4_A 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAA----GHTVIPYRDSVLTTVLQASLTAQSYLTFLA 310 (344)
T ss_dssp EEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHT----TCSSCCGGGSHHHHHTTTTSSTTCEEEEEE
T ss_pred EEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhc----cCCcCCccccHHHHHHHHHhCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999986 457999999999999999999999999999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHhcccccccc
Q 001229 408 NISPDNKDVGEILSTIRFGQRVKSIRNDPV 437 (1119)
Q Consensus 408 ~ISPs~~~~eETLsTLrFAsRAK~IkN~p~ 437 (1119)
||||+..+++||++||+||+||+.....|.
T Consensus 311 ~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 311 CISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred EeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999998876553
No 27
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=2.5e-80 Score=710.96 Aligned_cols=320 Identities=36% Similarity=0.554 Sum_probs=262.1
Q ss_pred CCCceeEeeeCCCCcccccCCCeEE-EeCCCceee-----------cCeeEEcCeecCCCCChHHHHHHhhHHHHHHHHc
Q 001229 94 DPSVKVVVRIRPANDLERDSNQTVK-KVSSDSLAV-----------GERKFAFDSVLDSNSNQEDIFQVVGLPLVKNALA 161 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~E~~~~~~v~-~~s~~~l~v-----------~~k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~ 161 (1119)
.++|+|+|||||++..|......+. ..+...+.+ +.+.|.||+||+++++|++||+. +.|+|+++|+
T Consensus 58 ~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l~ 136 (412)
T 3u06_A 58 RDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALD 136 (412)
T ss_dssp TCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHHHT
T ss_pred CCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHHC
Confidence 5789999999999988754433222 222222221 24689999999999999999985 5699999999
Q ss_pred CCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccccc
Q 001229 162 GYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQIG 241 (1119)
Q Consensus 162 GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~I~ 241 (1119)
|||+||||||||||||||||+|.+ ..+|||||++++||..|..... ..+.|.|+|||+|||||+|+
T Consensus 137 G~n~tifAYGqTGSGKTyTM~G~~----------~~~Giipr~~~~lF~~i~~~~~----~~~~~~v~vS~~EIYnE~i~ 202 (412)
T 3u06_A 137 GYNICIFAYGQTGSGKTYTMDGVP----------ESVGVIPRTVDLLFDSIRGYRN----LGWEYEIKATFLEIYNEVLY 202 (412)
T ss_dssp TCCEEEEEESSTTSSHHHHHTEET----------TEECHHHHHHHHHHHHHHHHGG----GTEEEEEEEEEEEEETTEEE
T ss_pred CCceEEEEecCCCCCCeeEecCCC----------CCCccHHHHHHHHHHhhhhhcc----cCceEEEEEEEEEEeCCeeE
Confidence 999999999999999999999975 4689999999999999986542 24689999999999999999
Q ss_pred cccccCCCcceee--eCCCCCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCC
Q 001229 242 DLLDQTQRNLEIK--DDPKHGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASS 319 (1119)
Q Consensus 242 DLL~~~~~~L~Ir--Ed~~~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~ 319 (1119)
|||++...++.++ +++.+|++|.|++++.|.++++++.+|..|..+|++++|.+|..|||||+||+|+|.+.....
T Consensus 203 DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-- 280 (412)
T 3u06_A 203 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK-- 280 (412)
T ss_dssp ETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT--
T ss_pred EcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC--
Confidence 9998776665554 678899999999999999999999999999999999999999999999999999998765432
Q ss_pred CcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCC
Q 001229 320 KCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGG 399 (1119)
Q Consensus 320 ~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGG 399 (1119)
.....|+|+|||||||||.. .+.+++|+.+||+||++||+||.+|+. +..|||||||||||||||+|||
T Consensus 281 ---~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~----~~~hiPyRdSkLT~LLqdsLgG 349 (412)
T 3u06_A 281 ---QEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGG 349 (412)
T ss_dssp ---TEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHHGGGTST
T ss_pred ---CCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhc----cCCCCCccccHHHHHHHHhcCC
Confidence 23457899999999999974 468999999999999999999999986 5679999999999999999999
Q ss_pred CceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccc-cccccc
Q 001229 400 NAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRND-PVINEI 441 (1119)
Q Consensus 400 NSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~-p~vNe~ 441 (1119)
||+|+|||||||+..+++||++||+||+|++.|+.. ++.|..
T Consensus 350 nskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~~ 392 (412)
T 3u06_A 350 NSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRY 392 (412)
T ss_dssp TCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC--------
T ss_pred CceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999999999999999999999844 444543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=7.2e-76 Score=715.31 Aligned_cols=315 Identities=33% Similarity=0.530 Sum_probs=248.6
Q ss_pred CCCceeEeeeC----CCCcccccCC-CeEEEeC--------CCcee--------ecCeeEEcCeecCCCCChHHHHHHhh
Q 001229 94 DPSVKVVVRIR----PANDLERDSN-QTVKKVS--------SDSLA--------VGERKFAFDSVLDSNSNQEDIFQVVG 152 (1119)
Q Consensus 94 ~~~VkVvVRVR----P~~~~E~~~~-~~v~~~s--------~~~l~--------v~~k~F~FD~VFd~~asQeeVY~~v~ 152 (1119)
-.+++|||||| |....|.+++ .++.... ...+. ...++|+||+||+++++|++||+.+
T Consensus 373 l~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~- 451 (715)
T 4h1g_A 373 KGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL- 451 (715)
T ss_dssp SCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGT-
T ss_pred HhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHH-
Confidence 46799999999 5544443332 2221111 11122 2357899999999999999999875
Q ss_pred HHHHHHHHcCCCcceeeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEE
Q 001229 153 LPLVKNALAGYNVSLLSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSF 232 (1119)
Q Consensus 153 ~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSy 232 (1119)
.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.|..... ....|.|+|||
T Consensus 452 ~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~------------~~Giipr~~~~lf~~~~~~~~----~~~~~~v~~s~ 515 (715)
T 4h1g_A 452 SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP------------TNGMIPLSLKKIFNDIEELKE----KGWSYTVRGKF 515 (715)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT------------TTSHHHHHHHHHHHHHHHHGG----GTEEEEEEEEE
T ss_pred HHHHHHHhCCceEEEEccCCCCCchhhccCCC------------CCCcHHHHHHHHHHHHHHhhc----CCceEEEEEEE
Confidence 59999999999999999999999999999993 469999999999999987543 24679999999
Q ss_pred EeeeccccccccccC---CCcceeeeCCC-CCeEecCcEEEEcCCHHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEE
Q 001229 233 LEIYNEQIGDLLDQT---QRNLEIKDDPK-HGFYVENLTEEYVTSYEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTF 308 (1119)
Q Consensus 233 lEIYNE~I~DLL~~~---~~~L~IrEd~~-~Gv~V~gLtev~V~S~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI 308 (1119)
+|||||+|+|||++. ...+.+++++. ++++|.||+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|
T Consensus 516 ~Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i 595 (715)
T 4h1g_A 516 IEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFII 595 (715)
T ss_dssp EEEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEE
T ss_pred EEEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEE
Confidence 999999999999864 34567776554 45999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecccCCCcccCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCc
Q 001229 309 IVESWCKEASSKCFSSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSC 388 (1119)
Q Consensus 309 ~Veq~~~~~~~~~~~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSK 388 (1119)
+|++..... .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+. ++..||||||||
T Consensus 596 ~~~~~~~~~-----~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~---~~~~~vpyR~Sk 667 (715)
T 4h1g_A 596 DLQGYNSLT-----KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNL---KDGSHVPYRNSK 667 (715)
T ss_dssp EEEEEETTT-----CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHH---CSCCCCCGGGCH
T ss_pred EEEEEecCC-----CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCcCCCccCH
Confidence 998865432 234679999999999999999999999999999999999999999999986 355799999999
Q ss_pred ccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccc
Q 001229 389 LTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIR 433 (1119)
Q Consensus 389 LTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik 433 (1119)
|||||||+|||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus 668 LT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 668 LTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp HHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=7.5e-29 Score=233.71 Aligned_cols=88 Identities=39% Similarity=0.536 Sum_probs=82.4
Q ss_pred hhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccc
Q 001229 354 GKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIR 433 (1119)
Q Consensus 354 g~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik 433 (1119)
+.+||+||++||+||.+|++ ++..||||||||||+||||+|||||+|+|||||||+..+++||++||+||+||+.|+
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~---~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~ 77 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIK 77 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHH---TCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCE
T ss_pred CCcchHHHHHHHHHHHHHHh---cCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhcc
Confidence 35799999999999999987 345799999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccHH
Q 001229 434 NDPVINEISED 444 (1119)
Q Consensus 434 N~p~vNe~~~~ 444 (1119)
|.|++|++..+
T Consensus 78 ~~~~~n~~~~~ 88 (100)
T 2kin_B 78 NTVSVNLELTA 88 (100)
T ss_dssp EEECCEEECCH
T ss_pred CcceeccCCCH
Confidence 99999987654
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=7.7e-28 Score=233.04 Aligned_cols=84 Identities=40% Similarity=0.565 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCceEeEeeecCCCCCcHHHHHHHHHHHHHhcccccccc
Q 001229 358 KKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAKLTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPV 437 (1119)
Q Consensus 358 NkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSkT~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~ 437 (1119)
|+||++||+||.+|++ ++..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+||+.|+|.|+
T Consensus 1 N~SL~~Lg~vi~aL~~---~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~ 77 (117)
T 3kin_B 1 NKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 77 (117)
T ss_dssp CCHHHHHHHHHHHHHH---SCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCHHHHHHHHHHHHh---CCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCce
Confidence 7999999999999997 3457999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHH
Q 001229 438 INEISED 444 (1119)
Q Consensus 438 vNe~~~~ 444 (1119)
+|+....
T Consensus 78 ~n~~~~~ 84 (117)
T 3kin_B 78 VNLELTA 84 (117)
T ss_dssp CCBCCCH
T ss_pred ecCcCCH
Confidence 9987643
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.8e-23 Score=224.56 Aligned_cols=261 Identities=11% Similarity=0.095 Sum_probs=168.1
Q ss_pred CCCceeEeeeCCCC-cccccCCCeEEEeCCCceee--cCeeEEcCeecCCCCChH--HHHHHhhHHHHHHHHc-CCCcce
Q 001229 94 DPSVKVVVRIRPAN-DLERDSNQTVKKVSSDSLAV--GERKFAFDSVLDSNSNQE--DIFQVVGLPLVKNALA-GYNVSL 167 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~-~~E~~~~~~v~~~s~~~l~v--~~k~F~FD~VFd~~asQe--eVY~~v~~pLV~~vL~-GyN~tI 167 (1119)
.|+|+|++||||.. + ...........+.+ +.+.|.||+||++.+.|+ +||+. +.++|+.+|+ |||+||
T Consensus 23 KGnIRVFcrvrp~~~p-----~~~~v~y~~~~I~v~~~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcI 96 (298)
T 2o0a_A 23 KGTMRCYAYVMEQNLP-----ENLLFDYENGVITQGLSEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNL 96 (298)
T ss_dssp HTCCEEEEEECGGGSC-----TTEEEETTTTEEEETTTCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEE
T ss_pred hCceEEEEEeccccCC-----ccceeecCccceeecCCCceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEE
Confidence 48999999999954 2 11112222222222 237899999999999999 99999 5599999999 999999
Q ss_pred eeeccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHH-hhhccCCCceeEEEEEEEEeee-ccccccccc
Q 001229 168 LSYGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQR-EQENSDGKQINYQCRCSFLEIY-NEQIGDLLD 245 (1119)
Q Consensus 168 fAYGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~-~~e~s~~~~~~fsV~vSylEIY-NE~I~DLL~ 245 (1119)
||||||||||| ||++..+|..... . .+.|.+.+||+||| ||.++|||.
T Consensus 97 fSyGQTGsGKT-----------------------~ral~q~f~~~~~~~-------~~~Y~~tlq~veLy~Ne~~~DLL~ 146 (298)
T 2o0a_A 97 ISLSTTPHGSL-----------------------RESLIKFLAEKDTIY-------QKQYVITLQFVFLSDDEFSQDMLL 146 (298)
T ss_dssp EEECSSCCHHH-----------------------HHHHHHHHHSTTSHH-------HHHEEEEEEEEEEECC-CEEETTS
T ss_pred EEECCCCCCcc-----------------------HHHHHHHHHHhhhhc-------ccceEEEEEEEEEecCCchHHhcC
Confidence 99999999999 8999999976532 1 15699999999999 999999995
Q ss_pred c--CCCcceeeeCCCCCeEecCcEEEEcCC-HHHHHHHHHHHhhcCcccccCCCCCCCCceEEEEEEEEeeecccCCCcc
Q 001229 246 Q--TQRNLEIKDDPKHGFYVENLTEEYVTS-YEDITQILIKGLSSRKVGATSVNSKSSRSHIVFTFIVESWCKEASSKCF 322 (1119)
Q Consensus 246 ~--~~~~L~IrEd~~~Gv~V~gLtev~V~S-~eE~l~LL~~G~~nR~tasT~~N~~SSRSHaIFtI~Veq~~~~~~~~~~ 322 (1119)
. ....+.|+.+..++++|.|++.+.|.+ .+|+..++..+.. +..|. +.-.|+.+.+.........+
T Consensus 147 ~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~~-- 215 (298)
T 2o0a_A 147 DYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDGN-- 215 (298)
T ss_dssp CCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------
T ss_pred CCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCccccccc--
Confidence 2 223678888889999999999999999 8988877722211 11221 23456666554321111111
Q ss_pred cCccccceeEEecCCCCCCCCccccccchHhhhHhhHHHHHHHHHHHHHhhhccCCCCCccCCCCcccccccccCCCCce
Q 001229 323 SSSKTSRICLVDIAGADRNKLDDVGRKSVKEGKYVKKSLAQLGYLVKALTQETLGKSEDVIYRCSCLTHLLRESLGGNAK 402 (1119)
Q Consensus 323 ~~~~~SrL~LVDLAGSER~~kt~a~g~rlkEg~~INkSLsaLG~VI~ALse~~~~k~~hVPYRDSKLTrLLqDSLGGNSk 402 (1119)
.....--++|+.+.-.. +...|.+. +.. + -+-.|+++-+|+--|. ..|
T Consensus 216 ~~~~~~d~yf~e~~~~~--------------------~~~~l~~~---~~~---~-----~~~~spi~~il~~ll~-~tk 263 (298)
T 2o0a_A 216 NDPVPVDFYFIELNNLK--------------------SIEQFDKS---IFK---K-----ESCETPIALVLKKLIS-DTK 263 (298)
T ss_dssp --CCCEEEEEEEECSHH--------------------HHHHHHHH---HHT---C------CCCSHHHHHHHHHHH-HSB
T ss_pred CCCCceEEEEEEeCCHH--------------------HHHHHHhh---ccc---c-----cccCCcHHHHHHHHHh-cCc
Confidence 01112246777765321 12333332 111 1 2445677777776654 457
Q ss_pred EeEeeecCCCCCcHHHHHHHHHHHHHhcccccccc
Q 001229 403 LTVVCNISPDNKDVGEILSTIRFGQRVKSIRNDPV 437 (1119)
Q Consensus 403 T~mIa~ISPs~~~~eETLsTLrFAsRAK~IkN~p~ 437 (1119)
-++++++.... +.-.-|..++++++++|...
T Consensus 264 s~~~~~l~~~~----~~~~lL~~s~~i~~~~~~~~ 294 (298)
T 2o0a_A 264 SFFLLNLNDSK----NVNKLLTISEEVQTQLCKRK 294 (298)
T ss_dssp CEEEEEECCGG----GHHHHHHHHHHHHHHTC---
T ss_pred ceEEEEecCCC----chhHHHHHHHHhhcccCccc
Confidence 78899986433 33347888888888877543
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.30 E-value=0.025 Score=56.41 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=34.8
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeecccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.++||.....+..|..+++.+. .++.++--.....++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIR-VFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHH-HHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHH-HHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 4678887665566777775543 55554433334567889999999999873
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.11 E-value=0.059 Score=54.51 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=33.5
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCC-cceeeecccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYN-VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN-~tIfAYGQTGSGKTyTM~ 182 (1119)
.++||.+...+..+..++..+ ..++...-.+.. ..|+-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 567887665555666676643 244444322222 678999999999999863
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.22 E-value=0.1 Score=57.62 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=33.3
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.++||.+......+..++. .+...+...-.+....|+-||++|+||||.+.+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence 3677775544434555665 333455544333356788999999999998754
No 35
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.34 E-value=35 Score=36.66 Aligned_cols=155 Identities=11% Similarity=0.150 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc---CcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHH
Q 001229 931 HARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAK---GHGSRFAKSVAAELSALRVERDREREFLKKENKSL 1007 (1119)
Q Consensus 931 har~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~---g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l 1007 (1119)
++.+-..+..++..+.++-..-++.-.-|++++....|.-.+ |...|=.++|-.||..++ ++...|.++...+
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~----~~i~~lE~eile~ 116 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAK----ERSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 455555666666666666666666666777766666554333 224467778888887766 3445555555555
Q ss_pred HHHhhhhHHHHhhhhhhhhhhhhHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCcccccC
Q 001229 1008 KIQLRDTAEAVHAAGELLVRLKEAE-QAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAESKLPESALQP 1086 (1119)
Q Consensus 1008 ~~qlrdtaeav~aagellvrl~eae-ea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~laes~lp~~~~~~ 1086 (1119)
-.++-..-+.+..+.+.|-.+++.- ++..--.......+.+.+.+.++.++|..+-..++.+.=..+...+ .+-++-|
T Consensus 117 ~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~-~g~avv~ 195 (256)
T 3na7_A 117 QNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWA-KNTSIVT 195 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-GGGSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCceEEE
Confidence 5555544445555555554444322 2223334456667788888888999999988888888888887654 4556666
Q ss_pred cccc
Q 001229 1087 LYRE 1090 (1119)
Q Consensus 1087 ~~~~ 1090 (1119)
+.+.
T Consensus 196 v~~~ 199 (256)
T 3na7_A 196 IKKQ 199 (256)
T ss_dssp CBTT
T ss_pred eeCC
Confidence 6554
No 36
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=86.83 E-value=34 Score=36.11 Aligned_cols=111 Identities=20% Similarity=0.325 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------HHHHhcccCcchhhHH
Q 001229 915 KVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKR--------------AAAKAGAKGHGSRFAK 980 (1119)
Q Consensus 915 ~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~--------------aaakag~~g~~~~f~~ 980 (1119)
+..+++.+.|+.+...-..+.+...++-+.-..|...-+.|.+=+..++. .|||||-.|.| | .
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~I~~Ia~qtnlLALNAaIEAAraGe~GrG--F-a 115 (213)
T 3g67_A 39 KISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKG--F-M 115 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH--H-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccccc--h-H
Confidence 34555666666666666667777777766666666666655444444432 57899988754 6 5
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhh
Q 001229 981 SVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRL 1028 (1119)
Q Consensus 981 ~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl 1028 (1119)
-+|.|+..|=.+-..--....+-.+.++.....+.+.+....+++-..
T Consensus 116 VVA~Evr~La~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 163 (213)
T 3g67_A 116 IVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETV 163 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888544444344455555556666666666555555544333
No 37
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.59 E-value=1.4 Score=57.18 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.4
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|.|-||+..|.+|+|||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 799999999999999999764
No 38
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=86.15 E-value=31 Score=35.01 Aligned_cols=12 Identities=8% Similarity=-0.105 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHH
Q 001229 1063 HKMEMITMKQYL 1074 (1119)
Q Consensus 1063 h~~e~~t~~~~l 1074 (1119)
++.++.++..+|
T Consensus 270 ~~~~~~~~~~~L 281 (284)
T 1c1g_A 270 ISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344555555554
No 39
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.14 E-value=0.45 Score=50.15 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=33.0
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHH-HHHH----cCCCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLV-KNAL----AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV-~~vL----~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..+.||.+.+.+.....+.+.+. .+- ...+ ......|+-||++|+|||+.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 45789999988777666654332 211 0111 123445899999999999976
No 40
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.45 E-value=4.6 Score=52.10 Aligned_cols=36 Identities=31% Similarity=0.383 Sum_probs=25.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHh-hhhhHH---HHHHHHH
Q 001229 1039 EANFSGVQQENEKLKKQIDKLKR-KHKMEM---ITMKQYL 1074 (1119)
Q Consensus 1039 ~~~~~~~~qe~~k~~~q~~klk~-kh~~e~---~t~~~~l 1074 (1119)
++....++.|+.+|.+|+|.|.. ..+.+- .+|++.+
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~~~~~~~~ 1061 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777899999999999999983 222221 3566555
No 41
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.94 E-value=12 Score=36.15 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=36.7
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001229 1024 LLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQY 1073 (1119)
Q Consensus 1024 llvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~ 1073 (1119)
=+|.||--=..+++++ .++|-..+-|+.+|+=||+-|+.||..|...
T Consensus 70 di~~lrK~lD~~~l~r---~dLE~~iesL~eEl~FLKk~heeEl~eLq~q 116 (119)
T 3ol1_A 70 TLQSFRQDVDNASLAR---LDLERKVESLQEEIAFLKKLHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhhhcccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666766555555554 5688889999999999999999999988643
No 42
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.13 E-value=0.4 Score=52.19 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=31.2
Q ss_pred cCeecCCCCChHHHHHHhhHHHHHHHHc--CCC--cceeeeccccccccccc
Q 001229 134 FDSVLDSNSNQEDIFQVVGLPLVKNALA--GYN--VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 134 FD~VFd~~asQeeVY~~v~~pLV~~vL~--GyN--~tIfAYGQTGSGKTyTM 181 (1119)
||.+|+..---..+.+.++..++...+. |.. ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4555544333356666777677776653 222 35788999999999965
No 43
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.71 E-value=0.42 Score=50.50 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=21.9
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|+||.+.+.+..-..+.+ .+..+. ..+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 4789988764333222222 222322 34567889999999999875
No 44
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.41 E-value=0.56 Score=45.37 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=21.6
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.++..+..+....|+-||++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 3444555566677999999999999976
No 45
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.20 E-value=4.9 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=17.7
Q ss_pred cCcccccCCCCCCCCceEEEEEEE
Q 001229 287 SRKVGATSVNSKSSRSHIVFTFIV 310 (1119)
Q Consensus 287 nR~tasT~~N~~SSRSHaIFtI~V 310 (1119)
.---+.|..|..|||-=-++.|+.
T Consensus 232 aFGnAkT~rN~NSSRfgk~~~i~f 255 (1184)
T 1i84_S 232 AFGNAKTVKNDNSSRFGKFIRINF 255 (1184)
T ss_dssp TTTEEEETTEEEEECSCEEEEEEE
T ss_pred HhcCCcCCCCccccccceeEEEEE
Confidence 334467899999999766666665
No 46
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=81.40 E-value=0.52 Score=51.30 Aligned_cols=44 Identities=25% Similarity=0.442 Sum_probs=29.9
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..|+|+.|++. ..+... +...++.+..+.|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 46889988764 333322 333344455566999999999999876
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=81.19 E-value=0.62 Score=45.18 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=21.7
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.++..+..+....|+-||++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 4445555566778899999999999976
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.09 E-value=0.65 Score=47.10 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=27.4
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHH-cCCCcceeeeccccccccccc
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNAL-AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL-~GyN~tIfAYGQTGSGKTyTM 181 (1119)
++||.++.. ..+..++.. +..++ .+....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~-----l~~~~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA-----LKSAASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHH-----HHHHHHTCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHH-----HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 567766552 223444433 23333 335677899999999999976
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=80.78 E-value=0.72 Score=50.24 Aligned_cols=49 Identities=20% Similarity=0.393 Sum_probs=30.0
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcC-CCcceeeecccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAG-YNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~G-yN~tIfAYGQTGSGKTyTM~ 182 (1119)
..|+||.++.. ..+...+.. +..++.. .| ....|+-||++|+|||+.+.
T Consensus 6 ~~~~f~~fv~g-~~~~~a~~~-~~~~~~~--~~~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 6 PKYTLENFIVG-EGNRLAYEV-VKEALEN--LGSLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TTCCSSSCCCC-TTTHHHHHH-HHHHHHT--TTTSCSSEEEECSSSSSHHHHHH
T ss_pred CCCCcccCCCC-CcHHHHHHH-HHHHHhC--cCCCCCeEEEECCCCCcHHHHHH
Confidence 35889887632 234444443 2233332 12 33568999999999999874
No 50
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=80.68 E-value=0.21 Score=56.38 Aligned_cols=53 Identities=23% Similarity=0.417 Sum_probs=31.7
Q ss_pred CeeEEcCeecCCCCChHHHHHHhhHHHHH-HHHc---CCCcceeeeccccccccccc
Q 001229 129 ERKFAFDSVLDSNSNQEDIFQVVGLPLVK-NALA---GYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 129 ~k~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~---GyN~tIfAYGQTGSGKTyTM 181 (1119)
...+.||.|.+.+.--+.+...+..++.. .++. .-...|+-||++|+|||+..
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 35678888887444333344433333321 1112 22357999999999999876
No 51
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=80.00 E-value=0.64 Score=51.98 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=20.6
Q ss_pred HHHHcCCCcceeeeccccccccccc
Q 001229 157 KNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 157 ~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..+-.|...+|+-||++|+|||.++
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3344677889999999999999876
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.77 E-value=20 Score=42.31 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 001229 1043 SGVQQENEKLKKQIDKLKR 1061 (1119)
Q Consensus 1043 ~~~~qe~~k~~~q~~klk~ 1061 (1119)
..+.||+++++++|.+|..
T Consensus 561 ~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 561 AELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 53
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.76 E-value=0.49 Score=50.25 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=32.6
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHH-----HHHcCCCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVK-----NALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~-----~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..++||.+.+.+..-+.+...+..++.. ..--.....|+-||++|+|||+.+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4578888887555445555444433221 111123456899999999999876
No 54
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.70 E-value=0.42 Score=50.17 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=28.8
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHH-HHHHcCC----Ccceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLV-KNALAGY----NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV-~~vL~Gy----N~tIfAYGQTGSGKTyTM 181 (1119)
..++||.|.+.+.....+-+ +...+- ..++.++ ...|+-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 45788888775433333322 111110 1123322 223899999999999987
No 55
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.41 E-value=44 Score=43.24 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.1
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+.|-||+.-|.+|+|||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 789999999999999999663
No 56
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.18 E-value=0.69 Score=50.31 Aligned_cols=52 Identities=19% Similarity=0.384 Sum_probs=32.6
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHH-HHc--C--CCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKN-ALA--G--YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~-vL~--G--yN~tIfAYGQTGSGKTyTM 181 (1119)
..++||.|.+.+..-+.+.+.+..|+... .+. | ....|+-||++|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 34678888775554455555554443211 121 2 3456899999999999876
No 57
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.96 E-value=85 Score=45.16 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=41.8
Q ss_pred hHHHHHHHHhhhhhhhHHHHHH------HHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHH
Q 001229 978 FAKSVAAELSALRVERDREREF------LKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEK 1051 (1119)
Q Consensus 978 f~~~laae~s~lr~ereke~~~------~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k 1051 (1119)
-++.-++|+.+.|.+-|+|-+. +|++...++.+|..+-+...++-+ .|++-|+-+..-++.+..+.+|.++
T Consensus 1984 ~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~---~L~~le~~l~~L~~~~~~~~~ek~~ 2060 (3245)
T 3vkg_A 1984 QLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVA---TITALEKSIATYKEEYATLIRETEQ 2060 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655553322 445555555555544444433332 3444455555555555555555555
Q ss_pred HHHHHHHHHhh
Q 001229 1052 LKKQIDKLKRK 1062 (1119)
Q Consensus 1052 ~~~q~~klk~k 1062 (1119)
++.+++..++|
T Consensus 2061 L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2061 IKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 58
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=76.50 E-value=1.1 Score=49.28 Aligned_cols=47 Identities=21% Similarity=0.184 Sum_probs=31.3
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCc--ceeeecccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNV--SLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~--tIfAYGQTGSGKTyTM~ 182 (1119)
.+.||.+.+ |+.+... ...++..+..|... .|+-||++|+|||+...
T Consensus 40 ~~~~~~ivG----~~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccC----hHHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 456777776 3344333 22455555666654 79999999999998763
No 59
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=74.09 E-value=1.2 Score=44.67 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=19.0
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..+++|.| ++..++||||||.+.
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHHH
Confidence 3455677765 677899999999873
No 60
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.06 E-value=51 Score=47.27 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=77.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc-c------Ccch----hhHHHHHHHHhhhhhhhHHHHHHH
Q 001229 933 RMVEHYAD-LQEKYNDLVSRHRAIMEGVAEVKRAAAKAGA-K------GHGS----RFAKSVAAELSALRVERDREREFL 1000 (1119)
Q Consensus 933 r~~e~y~~-l~e~~~~l~~~hr~i~~gi~~vk~aaakag~-~------g~~~----~f~~~laae~s~lr~ereke~~~~ 1000 (1119)
.+|..|.. |.+|..++..+.+++.-|++-.+.|+..-.. + .... .=++.+-.+|..-+.|-|++++..
T Consensus 1899 eli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777776 4678888888888888888777766654221 1 1000 012223333333333333333222
Q ss_pred HHhhHHHHHH------hh-----hhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhH
Q 001229 1001 KKENKSLKIQ------LR-----DTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKME 1066 (1119)
Q Consensus 1001 ~~en~~l~~q------lr-----dtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e 1066 (1119)
.++-+.+..| .+ |=|||-= |+=+--+|.+||+.+..|+++...++++..++..+|++||.+|+.-
T Consensus 1979 ~~~~~~~~~~~~ei~~~k~~~e~dL~~A~P-a~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 1979 RELQVQLDVRNKEIAVQKVKAYADLEKAEP-TGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211 11 1222222 2556678999999999999999999999999999999999998753
No 61
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=73.71 E-value=22 Score=35.48 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 001229 930 GHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKE 1003 (1119)
Q Consensus 930 ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~e 1003 (1119)
|.|.|---...|.+.-..||.|=.-+++=|++++|-++.-|||= +-+..++++.+|.+++.+=++=..|++.|
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP-~~~ql~~v~kdi~~a~~eL~~m~~~i~~e 80 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQP-AKKKLETVSKDLENAQADVLKLQEFIDTE 80 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56677777788999999999999999999999999999999998 56999999999999999777655555444
No 62
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.69 E-value=1.3 Score=45.11 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=19.2
Q ss_pred HHHHHHcCCCcceeeecccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyT 180 (1119)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4455677866 78889999999987
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=73.63 E-value=1.3 Score=44.29 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=18.8
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3455667765 678899999999754
No 64
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=73.58 E-value=0.76 Score=49.16 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=32.2
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHH-HHHcC---CCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVK-NALAG---YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~G---yN~tIfAYGQTGSGKTyTM 181 (1119)
....||.|.+.+..-..+.+.+..|+.. .++.| ....|+-||++|+|||+.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4567888877544444444444444321 11222 3567999999999999876
No 65
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=73.44 E-value=1.6 Score=43.11 Aligned_cols=21 Identities=38% Similarity=0.349 Sum_probs=16.8
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|....|+-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445999999999999876
No 66
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.38 E-value=0.74 Score=49.18 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=28.1
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHH-HHHHcCCC----cceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLV-KNALAGYN----VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV-~~vL~GyN----~tIfAYGQTGSGKTyTM 181 (1119)
..++||.|.+.+.....+.+. ...+- ..++.+++ ..|+-||++|+|||+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 357788877654333333221 11110 11233222 23899999999999986
No 67
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=71.97 E-value=1.6 Score=50.36 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=28.5
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeecccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
..|+||...... ++...+.. +..++.. .|....+|-||++|+|||+.+.
T Consensus 100 ~~~tfd~fv~g~-~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVVGP-GNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCCCT-TTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCCCC-chHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 468898755322 33333332 2222222 2213468899999999999873
No 68
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=71.91 E-value=1.2 Score=46.41 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=19.5
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4455677866 678999999999874
No 69
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=71.64 E-value=0.91 Score=49.59 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=24.8
Q ss_pred CChHHHHHHhhHHHHHHHH-cCCCcceeeeccccccccccc
Q 001229 142 SNQEDIFQVVGLPLVKNAL-AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 142 asQeeVY~~v~~pLV~~vL-~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..++...+.+. ..+..++ .+...+|+-||++|+|||+++
T Consensus 22 ~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33455554443 2223333 345568999999999999976
No 70
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=70.97 E-value=4.6 Score=37.29 Aligned_cols=43 Identities=28% Similarity=0.543 Sum_probs=30.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCcccccC
Q 001229 1038 AEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAESKLPESALQP 1086 (1119)
Q Consensus 1038 a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~laes~lp~~~~~~ 1086 (1119)
-+.++..+++||+.|+++|+.|+ .|+.+|+++|.. +|...+.|
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~----~E~~~Lr~ll~~--~p~~~~~~ 83 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLS----RELSTLRNLFKQ--LPEPLLAS 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH--CcHHHhcc
Confidence 36678889999999999999886 588999999975 77765543
No 71
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=70.63 E-value=1.3 Score=43.45 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.2
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
..++-||++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457779999999999874
No 72
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=70.35 E-value=0.87 Score=50.88 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=30.8
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHH----HcCCCcceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNA----LAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~v----L~GyN~tIfAYGQTGSGKTyTM 181 (1119)
...||.|.+.+..-..+.+.+..|+...- +.+....|+-||++|+|||+.+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 45778877644333344444433332111 2344567999999999999976
No 73
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=70.34 E-value=1.2 Score=44.66 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=18.0
Q ss_pred HHHHcCCCcceeeecccccccccccc
Q 001229 157 KNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 157 ~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
..++.|.+ ++..|+||+|||++..
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 44456655 6778999999999763
No 74
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.11 E-value=3.7 Score=47.80 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=37.6
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHH-HHHc--CC--Ccceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVK-NALA--GY--NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~--Gy--N~tIfAYGQTGSGKTyTM 181 (1119)
..-+||.|-+-+.--+++.+.+..|+.. ..+. |. --.|+-||+.|+|||++.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 3567898888776667777777777753 3343 32 356899999999999865
No 75
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=70.11 E-value=2.1 Score=45.37 Aligned_cols=21 Identities=38% Similarity=0.227 Sum_probs=17.9
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 455678999999999999976
No 76
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=69.48 E-value=0.75 Score=47.89 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.1
Q ss_pred CCcceeeeccccccccccc
Q 001229 163 YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM 181 (1119)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999976
No 77
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.07 E-value=6.3 Score=45.80 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=52.0
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHH-HHHc--CC--CcceeeeccccccccccccCC------CCCCC-CCCCCCCCC
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVK-NALA--GY--NVSLLSYGQTGSGKTYTMWGP------PSAMV-EDPSPRSKE 198 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~--Gy--N~tIfAYGQTGSGKTyTM~G~------~~~~~-~~~s~~~~~ 198 (1119)
.-+||.|-+-+.--+++.+.+..|+.. ..+. |. .-.|+-||+.|+|||++.-.- +--.+ .........
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSC
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcccc
Confidence 467888877665556666666666543 2333 33 245999999999999665210 00000 000122456
Q ss_pred CcHHHHHHHHHHHHHHh
Q 001229 199 GIVPRIFQKLFSEIQRE 215 (1119)
Q Consensus 199 GIIPRal~dLF~~I~~~ 215 (1119)
|-..+.++.+|......
T Consensus 248 Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 248 GEGPRMVRDVFRLAREN 264 (428)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHc
Confidence 88899999999987653
No 78
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=68.65 E-value=2 Score=44.60 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=19.6
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.| ++..++||||||.+.
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4455678876 688899999999873
No 79
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=68.09 E-value=1.9 Score=44.43 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=18.9
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.| ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 3455677866 677899999999863
No 80
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=67.74 E-value=1.3 Score=48.89 Aligned_cols=51 Identities=24% Similarity=0.420 Sum_probs=31.6
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHH-HHHcCC---Ccceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVK-NALAGY---NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~Gy---N~tIfAYGQTGSGKTyTM 181 (1119)
..+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 356777777554444454444444332 233442 246889999999999976
No 81
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=67.13 E-value=2.1 Score=43.59 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=19.1
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3456677866 677789999999865
No 82
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.12 E-value=2.9 Score=48.75 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=36.0
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHH-HHHc--CC--Ccceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVK-NALA--GY--NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~--Gy--N~tIfAYGQTGSGKTyTM 181 (1119)
...+||.|-+-+.--+++.+.+..|+.. ..+. |. .-.|+-||+.|+|||++.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 3567888877665556677777766643 3443 32 356899999999999865
No 83
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=67.07 E-value=3.1 Score=45.55 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=25.0
Q ss_pred hHHHHHHhhHHHHHHHHcCCC-c--ceeeeccccccccccc
Q 001229 144 QEDIFQVVGLPLVKNALAGYN-V--SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 144 QeeVY~~v~~pLV~~vL~GyN-~--tIfAYGQTGSGKTyTM 181 (1119)
++.....+. ..+..++.|.. . +++-||++|+|||+++
T Consensus 22 r~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 22 REQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred hHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 444554444 34555555543 4 6899999999999976
No 84
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=66.32 E-value=2.1 Score=49.55 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=22.2
Q ss_pred HHHHHHHcCCCcceeeecccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
+++..++..-.+.|.-.|+||||||+||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 35555565556678899999999999983
No 85
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=65.88 E-value=1.7e+02 Score=32.48 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=57.2
Q ss_pred HHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHH----
Q 001229 965 AAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEA---- 1040 (1119)
Q Consensus 965 aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~---- 1040 (1119)
.|||||--|.| | .-+|.|+..|=.+-.+--....+-...++.+...+.+.|..+++.+-.+.++=+.+...=.
T Consensus 172 EAARAGE~GrG--F-AVVAdEVRkLAe~t~~at~~I~~~i~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~ 248 (341)
T 3zx6_A 172 EAARAGEQGRG--F-AVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIAS 248 (341)
T ss_dssp HHTTSTTTSHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCc--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788866643 6 4578888777543333333333334445556666666666666665544433222211111
Q ss_pred -----------------hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcCCCcccc
Q 001229 1041 -----------------NFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAESKLPESAL 1084 (1119)
Q Consensus 1041 -----------------~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~laes~lp~~~~ 1084 (1119)
.....-+++...-.++...=.....-...|++.+..-++|...+
T Consensus 249 ~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fki~~~~~ 309 (341)
T 3zx6_A 249 ASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQ 309 (341)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 11111222222233333333344455667777788888888776
No 86
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=65.34 E-value=2.2 Score=45.34 Aligned_cols=25 Identities=40% Similarity=0.631 Sum_probs=19.1
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
++..++.|.| ++..++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 4455667866 678899999999863
No 87
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.21 E-value=1.5e+02 Score=31.68 Aligned_cols=145 Identities=10% Similarity=0.067 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc--ccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhh
Q 001229 935 VEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAG--AKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLR 1012 (1119)
Q Consensus 935 ~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag--~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlr 1012 (1119)
-....+|+..+..|-.+.-.+..-|.|+++...+.- +..... =++-.-..+...+ -.||...|.+|...++-...
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~-ri~~~~~~l~~v~--~~kE~~aL~kEie~~~~~i~ 107 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA-KIASIQKKMSEIK--SERELRSLNIEEDIAKERSN 107 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCS--SSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888888888889988888765531 111111 1122222222333 23344444444444444433
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--hhcCCCccccc
Q 001229 1013 DTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL--AESKLPESALQ 1085 (1119)
Q Consensus 1013 dtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l--aes~lp~~~~~ 1085 (1119)
+.=+-+. |+.-++-+.++.+..++++....+.+.+.++.+++.--...+.|+..+..-- ....+|...|.
T Consensus 108 ~lE~eil---e~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~ 179 (256)
T 3na7_A 108 QANREIE---NLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYS 179 (256)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3333322 2333333444445555555555555555555555555555555555443222 34567776653
No 88
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.77 E-value=2.9 Score=45.85 Aligned_cols=42 Identities=33% Similarity=0.456 Sum_probs=25.6
Q ss_pred EcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeecccccccccccc
Q 001229 133 AFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 133 ~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.|+.+++ |..+.+. +-..+-.|--..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3555654 4444432 3233345533337889999999999873
No 89
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=64.68 E-value=1.1 Score=47.02 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=28.5
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHHHc---------CCCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNALA---------GYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~---------GyN~tIfAYGQTGSGKTyTM 181 (1119)
..+.||.|.+.+..-+.+. .++..+.. .....|+-||++|+|||+.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVA-----ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTH-----HHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHH-----HHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 4567888876543333332 23333211 12446899999999999876
No 90
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=64.66 E-value=2.4 Score=44.19 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=18.2
Q ss_pred HHHHHcCCCcceeeeccccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+..++.|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667866 677789999999764
No 91
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=64.44 E-value=1.1 Score=48.47 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=28.2
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHH-HHHcCCC----cceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVK-NALAGYN----VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~GyN----~tIfAYGQTGSGKTyTM 181 (1119)
..+||.|-+.+.--+.+.+.+..|+-. .++.+++ ..|+-||+.|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 356777665544445555556555432 2344333 22899999999999875
No 92
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=64.00 E-value=1.8 Score=47.45 Aligned_cols=52 Identities=25% Similarity=0.448 Sum_probs=31.5
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHH-HHcCC---Ccceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKN-ALAGY---NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~-vL~Gy---N~tIfAYGQTGSGKTyTM 181 (1119)
...+||.|.+.+.--+.+...+..|+... .+.+. ...|+-||++|+|||+..
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34678888775444444444444443221 22232 245899999999999876
No 93
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=63.63 E-value=1.7e+02 Score=31.86 Aligned_cols=126 Identities=16% Similarity=0.263 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHH----HHHHHHhhH
Q 001229 931 HARMVEHYADLQEKYNDLV-SRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDRE----REFLKKENK 1005 (1119)
Q Consensus 931 har~~e~y~~l~e~~~~l~-~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke----~~~~~~en~ 1005 (1119)
++|+-.+--+|++.-.-+. +-+.+|...+.++|...+=..-... .-|+.-+.+|+--=++- +..|...-.
T Consensus 105 r~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l~P~ae~~~-----~kl~~~~e~L~~ql~~~a~~L~~~l~~~~e 179 (273)
T 3s84_A 105 KAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDTQ-----EKLNHQLEGLTFQMKKNAEELKARISASAE 179 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSSCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555665543333 3456777788888877654332221 11222233332111111 112333445
Q ss_pred HHHHHhhhhHHHHhhhhhhhhhhhh-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1006 SLKIQLRDTAEAVHAAGELLVRLKE-AEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1006 ~l~~qlrdtaeav~aagellvrl~e-aeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
.|+.+|-.+||.|++. |-. .|++- ..++.=+..+.+|++.++++-+.-+.+|+..|
T Consensus 180 eLr~~L~p~ae~lr~~------l~~~~e~l~-------~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l 236 (273)
T 3s84_A 180 ELRQRLAPLAEDVRGN------LRGNTEGLQ-------KSLAELGGHLDQQVEEFRRRVEPYGENFNKAL 236 (273)
T ss_dssp HHHHHHHHHHHHHHHT------SSSCHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence 6777777777777642 111 11211 11222234555555555555555555555544
No 94
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=63.40 E-value=2.3 Score=48.04 Aligned_cols=28 Identities=32% Similarity=0.279 Sum_probs=21.1
Q ss_pred HHHHHHcCCCcceeeecccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
++.+++.--.+.|.-.|+||||||+||.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 4445555555688889999999999983
No 95
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=63.25 E-value=2.5 Score=45.23 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=15.9
Q ss_pred CCcceeeeccccccccccc
Q 001229 163 YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM 181 (1119)
....|+-||++|+|||++.
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3446999999999999976
No 96
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=62.90 E-value=2.6 Score=43.22 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=18.7
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.| ++..++||||||.+.
T Consensus 50 ~i~~~~~~~~--~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGID--LIVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455667866 577899999999864
No 97
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=62.70 E-value=2.2 Score=43.49 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=18.6
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..+++|.| ++..++||||||.+.
T Consensus 34 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 34 IIPGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455667765 567899999999873
No 98
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.35 E-value=3 Score=45.98 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=19.9
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 4556678877 688999999999873
No 99
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=61.97 E-value=2e+02 Score=33.49 Aligned_cols=43 Identities=19% Similarity=0.075 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhh-hhhhhHHHHHH
Q 001229 994 DREREFLKKENKSLKIQLRDTAEAVHAAGELL-VRLKEAEQAAS 1036 (1119)
Q Consensus 994 eke~~~~~~en~~l~~qlrdtaeav~aagell-vrl~eaeea~~ 1036 (1119)
.|||+.+.++-..++.+|.+.--.|.-|=.-. -+-+|++.|..
T Consensus 128 ~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~ 171 (486)
T 3haj_A 128 FKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAIS 171 (486)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777776666666665554433 23455555533
No 100
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=61.72 E-value=3.1 Score=45.30 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=20.7
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|-+.-++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 445667775556889999999999863
No 101
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=61.60 E-value=3.1 Score=42.88 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=17.7
Q ss_pred HHHHHcCCCcceeeecccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyT 180 (1119)
+..++.|.| ++..++||||||.+
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 344667866 67788999999987
No 102
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=61.59 E-value=61 Score=29.31 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=42.7
Q ss_pred HHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHhhhhhHHHHHHHHH
Q 001229 999 FLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEK---LKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 999 ~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k---~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
-|+..|.+|..+|+||-.-... .++.+...+..-+.....+.++.+. =|+.+=+.|-+-++||.|-..+|
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~~------~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFAV------EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555899999999987543222 2333333333333333333344332 36666677888899999999988
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.36 E-value=1.2e+02 Score=34.98 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=37.8
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001229 977 RFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQI 1056 (1119)
Q Consensus 977 ~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~ 1056 (1119)
.+++....-.+.+.++.|+||+-++.+.+.. +++....++|+++++|.|
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 410 QLLRAIVKRYEEMYVEQQSVQNNAIRDWDMY-------------------------------QHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhh-------------------------------hhHHHHHHHHhhhhhhhh
Confidence 4677777777778888888776655443332 444455555666666666
Q ss_pred HHHHhhhhhHHHHH
Q 001229 1057 DKLKRKHKMEMITM 1070 (1119)
Q Consensus 1057 ~klk~kh~~e~~t~ 1070 (1119)
+++.+.-+.-..|+
T Consensus 459 ~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 459 GEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhhHhcccHH
Confidence 66655544433333
No 104
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.05 E-value=2.7 Score=46.13 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=24.8
Q ss_pred hHHHHHHhhHHHHHHHHcC-CCcceeeeccccccccccc
Q 001229 144 QEDIFQVVGLPLVKNALAG-YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 144 QeeVY~~v~~pLV~~vL~G-yN~tIfAYGQTGSGKTyTM 181 (1119)
++...+.+. ..+..++.| ...+|+-||++|+|||+++
T Consensus 25 r~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 25 REDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred hHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 444554444 344555544 3457999999999999876
No 105
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=60.91 E-value=2 Score=46.73 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=16.8
Q ss_pred CCCcceeeeccccccccccc
Q 001229 162 GYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 162 GyN~tIfAYGQTGSGKTyTM 181 (1119)
+....|+-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34568999999999999876
No 106
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=60.81 E-value=3.1 Score=43.20 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=18.1
Q ss_pred HHHHHcCCCcceeeeccccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+..++.|.| ++..++||||||.+.
T Consensus 60 i~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCcCHHHHHH
Confidence 445567865 567789999999873
No 107
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.69 E-value=53 Score=31.84 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=43.7
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHH---HHH
Q 001229 977 RFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENE---KLK 1053 (1119)
Q Consensus 977 ~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~---k~~ 1053 (1119)
|-+.+|-+||..++. .|.+|..+|+||=.-- ++ .|+.+...+..-+.....+.++.+ .=|
T Consensus 43 r~iq~L~~el~~l~~-----------~~~~LE~~l~e~e~~~----~~--~l~~~q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKK-----------QCANLQNAIADAEQRG----EL--ALKDARNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 355666666665555 8999999999874321 11 111121111111111222222222 125
Q ss_pred HHHHHHHhhhhhHHHHHHHHH
Q 001229 1054 KQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1054 ~q~~klk~kh~~e~~t~~~~l 1074 (1119)
+.+=..|=..++||.|-..+|
T Consensus 106 q~LlnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 106 QELMNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 666677888889999887776
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=60.49 E-value=4.1 Score=47.01 Aligned_cols=46 Identities=26% Similarity=0.269 Sum_probs=32.0
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCC--cceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYN--VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN--~tIfAYGQTGSGKTyTM 181 (1119)
.|.||.|.+ |+++...+. .+++.+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l~-~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREACG-VIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHHH-HHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHHH-HHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 466777765 555555433 56666667754 36888999999999875
No 109
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=60.47 E-value=3 Score=43.39 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=18.5
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.++..+..|- .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3445555664 4678899999999755
No 110
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=60.36 E-value=2.2 Score=47.73 Aligned_cols=52 Identities=25% Similarity=0.462 Sum_probs=32.4
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHH-HHHcCC---Ccceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVK-NALAGY---NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~Gy---N~tIfAYGQTGSGKTyTM 181 (1119)
...+|+.|.+.+..-..+...+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 3467888877655545555555444322 223332 245889999999999976
No 111
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=60.30 E-value=3.3 Score=43.56 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=18.5
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.| ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 3455667865 667789999999874
No 112
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.02 E-value=63 Score=31.41 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=43.9
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHH---HHH
Q 001229 978 FAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEK---LKK 1054 (1119)
Q Consensus 978 f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k---~~~ 1054 (1119)
-+.+|-+||..++. .|.+|..+|+||=.- |++ .|+.+...+..-+.....+.++.+. =|+
T Consensus 46 ~iq~L~~el~~l~~-----------~~~sLE~~l~e~e~~----~~~--~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 46 TMQNLEIELQSQLS-----------MKASLENSLEETKGR----YCM--QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655555 888999999887442 111 1112222221112222222222222 256
Q ss_pred HHHHHHhhhhhHHHHHHHHH
Q 001229 1055 QIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1055 q~~klk~kh~~e~~t~~~~l 1074 (1119)
.+=+.|=..++||.|-..+|
T Consensus 109 ~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 109 ILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 66677888899999988877
No 113
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.03 E-value=60 Score=36.49 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=74.0
Q ss_pred CCCceeEeeeCCCCcccccCCCeEEEeCCCce--eecCeeEEcCeecCCCC-ChHHHHHHhhHHHHHHHH-cCCCcceee
Q 001229 94 DPSVKVVVRIRPANDLERDSNQTVKKVSSDSL--AVGERKFAFDSVLDSNS-NQEDIFQVVGLPLVKNAL-AGYNVSLLS 169 (1119)
Q Consensus 94 ~~~VkVvVRVRP~~~~E~~~~~~v~~~s~~~l--~v~~k~F~FD~VFd~~a-sQeeVY~~v~~pLV~~vL-~GyN~tIfA 169 (1119)
.|.|+++.=+-+-... ...-.......+ ....+.|.|++|++... +-.+++..-+...++-++ .+.|+.||.
T Consensus 58 KG~IRcFAYi~~~~~p----~~~~idY~~~~It~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIs 133 (333)
T 4etp_B 58 KGTMRVYAYVMEQNLP----ENLLFDYENGVITQGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLIS 133 (333)
T ss_dssp HTCCEEEEEECCSSCC----SSCEEETTTTEEEC--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEE
T ss_pred cCcEEEEEEECcccCC----ccEEEecccceEeecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEE
Confidence 4778888888653211 112222233333 22468999999997664 455666667779999999 999999999
Q ss_pred eccccccccccccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhhccCCCceeEEEEEEEEeeeccc-cccccccC
Q 001229 170 YGQTGSGKTYTMWGPPSAMVEDPSPRSKEGIVPRIFQKLFSEIQREQENSDGKQINYQCRCSFLEIYNEQ-IGDLLDQT 247 (1119)
Q Consensus 170 YGQTGSGKTyTM~G~~~~~~~~~s~~~~~GIIPRal~dLF~~I~~~~e~s~~~~~~fsV~vSylEIYNE~-I~DLL~~~ 247 (1119)
.|..- + +.+...|+..+.... .--...|.+.+-||.+-++. ..|||.+.
T Consensus 134 is~~~-----------------------w---~~Lr~~lL~fi~~k~---~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 134 LSTTP-----------------------H---GSLRESLIKFLAEKD---TIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp EESSC-----------------------C---CHHHHHHHHHHHSTT---CHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred ecCCC-----------------------c---HHHHHHHHHHHHhcc---cccccceEEEEEEEEEcCCCchhhhhccc
Confidence 88531 0 123334444443220 00013578888888887665 69999764
No 114
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=58.86 E-value=3.7 Score=44.67 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=20.7
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|-...++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 455667775466788999999999864
No 115
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=57.47 E-value=4.3 Score=44.63 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=21.6
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..+..++.|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3456667776667889999999999873
No 116
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=57.27 E-value=3.8 Score=45.39 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=19.2
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.| ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 3455677876 678899999999764
No 117
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=56.74 E-value=45 Score=30.36 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=36.4
Q ss_pred HHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 999 FLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENE---KLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 999 ~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~---k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
-|+.+|.+|..+|+||-.-..+ .+......+..-+.....+.++.+ +=|+.+=+.|-+-++||.|-..+|
T Consensus 7 ~L~~q~~~Le~~l~e~E~~~~~------~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 7 QLQCQLAAKEAKLRDLEDSLAR------ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp -----CTTHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455888999999988653222 112222222211222222222222 235666677888899999999988
No 118
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=56.58 E-value=5.1 Score=39.79 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=15.1
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999876
No 119
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=56.48 E-value=2.3 Score=49.12 Aligned_cols=52 Identities=23% Similarity=0.400 Sum_probs=30.6
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHH-HHHcC---CCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVK-NALAG---YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~G---yN~tIfAYGQTGSGKTyTM 181 (1119)
...+||.|.+.+..-..+...+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 4567888877443333333333333221 22333 2356889999999999976
No 120
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=56.00 E-value=25 Score=32.79 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHhhhhhHHHH
Q 001229 993 RDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENE---KLKKQIDKLKRKHKMEMIT 1069 (1119)
Q Consensus 993 reke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~---k~~~q~~klk~kh~~e~~t 1069 (1119)
||..-.-|+.+|.+|..+|+||-.-.. +.+......+..-+.....+.++.+ .-|+.+=+.|-+-++||.|
T Consensus 10 ~~~~~~~Lq~~~~~LE~~l~e~E~~~~------~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 10 RENLYFQGQKESRACLERIQELEDLLA------KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp --------CCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566789999999999855221 1222222222222222222223322 2367777889999999999
Q ss_pred HHHHH
Q 001229 1070 MKQYL 1074 (1119)
Q Consensus 1070 ~~~~l 1074 (1119)
-..+|
T Consensus 84 YrkLL 88 (95)
T 3mov_A 84 YRKLL 88 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
No 121
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=55.93 E-value=5.1 Score=42.44 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=15.8
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999976
No 122
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.79 E-value=23 Score=32.29 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=12.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHH
Q 001229 1040 ANFSGVQQENEKLKKQIDKLK 1060 (1119)
Q Consensus 1040 ~~~~~~~qe~~k~~~q~~klk 1060 (1119)
.+....+.|.++++++|+.|+
T Consensus 52 ~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 52 ARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777776654
No 123
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=55.67 E-value=4 Score=44.94 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=18.7
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 3455567766 677899999999764
No 124
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=55.61 E-value=3.3 Score=44.54 Aligned_cols=19 Identities=42% Similarity=0.462 Sum_probs=15.9
Q ss_pred CCcceeeeccccccccccc
Q 001229 163 YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM 181 (1119)
-...+.-.|+||||||++|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 3456778899999999987
No 125
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=55.28 E-value=4.2 Score=46.50 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=21.0
Q ss_pred HHHHHHcCCCcceeeecccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyT 180 (1119)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45566777667789999999999977
No 126
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=55.18 E-value=4.4 Score=43.13 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=19.0
Q ss_pred HHHHHHcCCCcceeeecccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.+..+++|.+ ++..++||+|||.+..
T Consensus 24 ~i~~i~~~~~--~lv~~~TGsGKT~~~~ 49 (337)
T 2z0m_A 24 TIPLMLQGKN--VVVRAKTGSGKTAAYA 49 (337)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCcHHHHHH
Confidence 3455567765 6777999999998653
No 127
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=55.13 E-value=6.5 Score=42.69 Aligned_cols=44 Identities=27% Similarity=0.303 Sum_probs=28.1
Q ss_pred EcCeecCCCCChHHHHHHhhHHHHHHHH--cCCCcceeeeccccccccccc
Q 001229 133 AFDSVLDSNSNQEDIFQVVGLPLVKNAL--AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 133 ~FD~VFd~~asQeeVY~~v~~pLV~~vL--~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+|+.+.+ +..+...+. .++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l~-~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNLN-VFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHHH-HHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHHH-HHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4555554 445554433 3444443 344567999999999999876
No 128
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=54.47 E-value=3.6 Score=48.39 Aligned_cols=50 Identities=26% Similarity=0.421 Sum_probs=28.8
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHH-HHH----cCCCcceeeeccccccccccc
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVK-NAL----AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~-~vL----~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..|+.+.+.+..-..+++.+..++-. .++ ......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 45555555443334454444433211 111 234567999999999999876
No 129
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=53.45 E-value=5.8 Score=38.16 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=17.0
Q ss_pred CCcceeeeccccccccccccC
Q 001229 163 YNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM~G 183 (1119)
.+..|+-||++|+|||+....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGG
T ss_pred CCCcEEEECCCCccHHHHHHH
Confidence 445688899999999987654
No 130
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.17 E-value=4.4 Score=46.83 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=36.9
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHH-HHHc--CC--Ccceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVK-NALA--GY--NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~--Gy--N~tIfAYGQTGSGKTyTM 181 (1119)
.-+||.|-+-+.--+++.+.+..|+.. ..+. |. .-.|+-||+.|+|||+..
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 457888887766667777777777653 3443 33 356999999999999864
No 131
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.14 E-value=4.7 Score=43.69 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=18.8
Q ss_pred HHHHHcCCCcceeeeccccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
...+..|....++-||++|+|||+++
T Consensus 50 ~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 50 KKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 33344554344899999999999876
No 132
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=53.04 E-value=5.7 Score=43.18 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=22.1
Q ss_pred ChHHHHHHhhHHHHHHHHcCCCcceeeecccccccccccc
Q 001229 143 NQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 143 sQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.|+++...+. ..+..| ..|+-||++|+|||+.+.
T Consensus 31 g~~~~~~~l~----~~l~~~--~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 31 GQKYMINRLL----IGICTG--GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp SCHHHHHHHH----HHHHHT--CCEEEESCCCHHHHHHHH
T ss_pred CcHHHHHHHH----HHHHcC--CeEEEECCCCCcHHHHHH
Confidence 3555544333 333344 468889999999999763
No 133
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=52.88 E-value=5.9 Score=43.34 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=23.1
Q ss_pred HHHHHHHcCC---Ccceeeecccccccccccc
Q 001229 154 PLVKNALAGY---NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 154 pLV~~vL~Gy---N~tIfAYGQTGSGKTyTM~ 182 (1119)
..+..++.|. --||+-||+.|+|||+...
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3467788887 3479999999999998763
No 134
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=52.60 E-value=4.4 Score=42.59 Aligned_cols=25 Identities=28% Similarity=0.097 Sum_probs=18.3
Q ss_pred HHHHcCCCcceeeeccccccccccccC
Q 001229 157 KNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 157 ~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
..++.+.+ ++.+|+||+|||++...
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a~~ 127 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVAMA 127 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHHHH
Confidence 34556655 67789999999998643
No 135
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=52.46 E-value=4.4 Score=38.98 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=17.3
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
...+..|+-||++|+|||+..
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 345667999999999999865
No 136
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=52.33 E-value=6 Score=42.16 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=25.8
Q ss_pred EcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 133 AFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 133 ~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|+.+.+ |+++...+. ..+-.|....++-||++|+|||++.
T Consensus 23 ~~~~~~g----~~~~~~~l~----~~l~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 23 RLDDIVG----QEHIVKRLK----HYVKTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp STTTCCS----CHHHHHHHH----HHHHHTCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhhC----CHHHHHHHH----HHHHcCCCCeEEEECcCCCCHHHHH
Confidence 4555544 455544332 2233454445899999999999976
No 137
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=51.64 E-value=5.3 Score=44.14 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=18.2
Q ss_pred HHHHHcCCCcceeeeccccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+..++.|.| ++..++||||||.++
T Consensus 46 i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHccCCC--EEEEcCCCCHHHHHH
Confidence 345567876 567899999999764
No 138
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=51.50 E-value=9.9 Score=40.72 Aligned_cols=45 Identities=24% Similarity=0.246 Sum_probs=27.1
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHH--cCCCcceeeeccccccccccc
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNAL--AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL--~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+|+.+.+. ..+...+. .++..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~----~~~~~~l~-~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQ----ERLKQKLR-VYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSC----HHHHHHHH-HHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCH----HHHHHHHH-HHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 356666553 33333322 3333333 235567889999999999876
No 139
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.47 E-value=4.7 Score=42.84 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=21.2
Q ss_pred HHHHHHcCCC--cceeeeccccccccccccC
Q 001229 155 LVKNALAGYN--VSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 155 LV~~vL~GyN--~tIfAYGQTGSGKTyTM~G 183 (1119)
.+..++.|.- -+++-||+.|+|||+....
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 3455666632 4699999999999997643
No 140
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=51.44 E-value=5.4 Score=47.12 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=17.4
Q ss_pred HHHHcCCCcceeeecccccccccccc
Q 001229 157 KNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 157 ~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
+.+..|.+.++++ ++||||||++++
T Consensus 192 ~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 192 QSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3444576554444 999999999964
No 141
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.16 E-value=14 Score=43.24 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=33.7
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHH-HHHc--CC--Ccceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVK-NALA--GY--NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~--Gy--N~tIfAYGQTGSGKTyTM 181 (1119)
.-+||.|-+-+.--+++.+.+..|+.. ..+. |. --.|+-||+.|+|||++.
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 457777766555556666666666542 2333 32 356999999999999764
No 142
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=50.44 E-value=5.1 Score=44.77 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=18.5
Q ss_pred HHHHHHcCCCcceeeecccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyT 180 (1119)
.+..++.|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 4455667865 67889999999984
No 143
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=50.07 E-value=6.6 Score=46.51 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=16.3
Q ss_pred cCCCcceeeecccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.|.+ |.-.|+||||||+||.
T Consensus 259 ~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHHH
Confidence 5665 6778999999999874
No 144
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=49.95 E-value=4.9 Score=42.88 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=23.7
Q ss_pred ChHHHHHHhhHHHHHHHHcCC------Ccceeeeccccccccccc
Q 001229 143 NQEDIFQVVGLPLVKNALAGY------NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 143 sQeeVY~~v~~pLV~~vL~Gy------N~tIfAYGQTGSGKTyTM 181 (1119)
.|..+.+.+...+ .....|. ...|+-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i-~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAI-RRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHH-HHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHH-HHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 3555555544333 3332221 257899999999999876
No 145
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=49.94 E-value=14 Score=35.40 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhh
Q 001229 979 AKSVAAELSALRVERDREREFLKKENKSLKIQLRD 1013 (1119)
Q Consensus 979 ~~~laae~s~lr~ereke~~~~~~en~~l~~qlrd 1013 (1119)
..-|||||.-|+. |||.|+.||+-
T Consensus 10 ~EeLaaeL~kLqm-----------ENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKL-----------ENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHH-----------HHHHHHHTC--
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHhc
Confidence 4568888888887 99999999996
No 146
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.55 E-value=7.6 Score=45.09 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=27.8
Q ss_pred EcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 133 AFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 133 ~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.||.|.+. +.... .++..+-.+....++-||++|+|||+...+
T Consensus 178 ~ld~iiGr----~~~i~----~l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQ----RVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp CSCCCCCC----HHHHH----HHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCccCc----HHHHH----HHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 56666653 33333 334444445566788899999999998754
No 147
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=48.64 E-value=5.1 Score=43.72 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=18.9
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4455667866 567899999999873
No 148
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.48 E-value=3.5 Score=48.48 Aligned_cols=51 Identities=31% Similarity=0.522 Sum_probs=35.4
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHH-HHHc--C--CCcceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVK-NALA--G--YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~--G--yN~tIfAYGQTGSGKTyTM 181 (1119)
..+||.|-+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||++.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 467888877666556666666666543 2343 3 2356999999999999764
No 149
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=48.02 E-value=34 Score=32.04 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=27.7
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001229 1022 GELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQY 1073 (1119)
Q Consensus 1022 gellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~ 1073 (1119)
++|.++|..||+|+..- +++..++|..|.+++..+ ..|..|++.
T Consensus 5 ~~L~~~L~~aEeaL~~k-------q~~id~lke~~~q~~~~~-E~i~vLk~Q 48 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAK-------QELIDKLKEEAEQHKIVM-ETVPVLKAQ 48 (94)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 57889999999998764 445555555555555444 234444443
No 150
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=47.31 E-value=6.5 Score=42.92 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=19.0
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.| ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4556677766 677789999999865
No 151
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=46.96 E-value=18 Score=32.39 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=40.6
Q ss_pred HHHHH--HHHhHHHHHHHHH--------HhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhh
Q 001229 950 SRHRA--IMEGVAEVKRAAA--------KAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLR 1012 (1119)
Q Consensus 950 ~~hr~--i~~gi~~vk~aaa--------kag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlr 1012 (1119)
+|.|+ |.+|+.+++...- ||.+=.....||+.|-.++..|. .|.+.|+.+|..|+.||.
T Consensus 10 Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~----~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 10 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQ----QDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 44444 6777777765542 33333333468888888888875 467789999999999984
No 152
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=46.58 E-value=4.4 Score=45.88 Aligned_cols=26 Identities=35% Similarity=0.309 Sum_probs=18.6
Q ss_pred HHHHHcCCCcceeeeccccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+..+.-.....|.-.|+||||||++|
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 33333333456888999999999988
No 153
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=46.57 E-value=5.9 Score=42.06 Aligned_cols=21 Identities=38% Similarity=0.349 Sum_probs=16.9
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|....++-||+.|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 454445899999999999876
No 154
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=46.40 E-value=11 Score=41.57 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=14.5
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 44777999999999876
No 155
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=46.26 E-value=7.7 Score=42.86 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.4
Q ss_pred HHHHcC---CCcceee--eccccccccccc
Q 001229 157 KNALAG---YNVSLLS--YGQTGSGKTYTM 181 (1119)
Q Consensus 157 ~~vL~G---yN~tIfA--YGQTGSGKTyTM 181 (1119)
..+..| -...++- ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555556 4557888 999999999876
No 156
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=46.09 E-value=4.7 Score=42.95 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=16.5
Q ss_pred HHHHcCCCcceeeecccccccccccc
Q 001229 157 KNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 157 ~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
..++.|.++ +..++||+|||.+..
T Consensus 123 ~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 123 FEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 334555444 348999999999864
No 157
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=45.59 E-value=7.9 Score=45.13 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.1
Q ss_pred HHHHHcCCCcceeeeccccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+..++.|.+..++..++||||||++.
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHH
Confidence 45567775566788999999999873
No 158
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=45.43 E-value=32 Score=32.97 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=21.8
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1022 GELLVRLKEAEQAASVAEANFSGVQQENEKLKK 1054 (1119)
Q Consensus 1022 gellvrl~eaeea~~~a~~~~~~~~qe~~k~~~ 1054 (1119)
++|-+||..||+|+..-+.-...+.++.++..+
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999987755554444444444333
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=45.37 E-value=7.9 Score=44.93 Aligned_cols=43 Identities=28% Similarity=0.473 Sum_probs=27.7
Q ss_pred cCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 134 FDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 134 FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
||.|++ |+.+... +..+...+-.|.-..|+-||++|+|||+..
T Consensus 25 l~~ivG----q~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 25 LAQYIG----QQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp TTTCCS----CHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHHhCC----cHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 455443 5555421 134444445566568999999999999876
No 160
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=45.20 E-value=13 Score=40.44 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=23.6
Q ss_pred HHHhhHHHHHHHHcCC-----Ccceeeeccccccccccc
Q 001229 148 FQVVGLPLVKNALAGY-----NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 148 Y~~v~~pLV~~vL~Gy-----N~tIfAYGQTGSGKTyTM 181 (1119)
+..+...++..++.|+ ...|+..|++|||||+..
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 12 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 3345556666666654 245788999999999864
No 161
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=45.20 E-value=6.9 Score=48.86 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=28.9
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
-.||.|++. ++. ...+++.+..+....++-||++|+|||+.+.+
T Consensus 167 ~~ld~viGr----~~~----i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 167 GKLDPVIGR----DEE----IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp TCSCCCCSC----HHH----HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCCcccCCc----HHH----HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 356666653 332 33344444556666688899999999998754
No 162
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=45.19 E-value=1.6e+02 Score=29.69 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=52.2
Q ss_pred hhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001229 888 LTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRH 952 (1119)
Q Consensus 888 lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~h 952 (1119)
.-..|+.++...+.....++.||+.=.|-.+.|.|.+..-=.-+.-+=+.-..||+-|..|+.|.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999987544444444455678888899998874
No 163
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=45.16 E-value=7.4 Score=41.82 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=17.9
Q ss_pred HHHHHcCCCcceeeeccccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+..++.|.. .++..++||||||.++
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 445566632 3667899999999874
No 164
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.99 E-value=16 Score=33.06 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=28.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 001229 1038 AEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLA 1075 (1119)
Q Consensus 1038 a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~la 1075 (1119)
-+.++..+++||..|+++|+.|+ .|+.+|+++|.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~----~E~~~Lr~ll~ 74 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLS----RELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 35678889999999999999885 58899998883
No 165
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=44.40 E-value=8 Score=44.01 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=18.5
Q ss_pred HHHHHcCCCcceeeeccccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+..++.|.| +++.++||||||.+.
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 445577866 688899999999863
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=43.50 E-value=5.3 Score=46.97 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=27.9
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHHH-----HcC----CCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKNA-----LAG----YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~v-----L~G----yN~tIfAYGQTGSGKTyTM 181 (1119)
..++|+.|.+.+..-.++. .++..+ +.+ ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~-----e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELK-----EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHH-----HHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHH-----HHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3567888776443322332 233322 222 2345899999999999876
No 167
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=43.19 E-value=3.1e+02 Score=28.61 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=62.9
Q ss_pred hHHHHHHHhhhhhhcccceehhhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001229 868 AEELEKERERWTEMESEWICLTDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYND 947 (1119)
Q Consensus 868 ~~~~~~er~~w~e~es~wi~lt~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~ 947 (1119)
|.+||+|=...---.+.--+--.-|+.|++..|...+....|... -..-|++=+..-...+-.+-.+-.+|+-.-+|
T Consensus 44 E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~---~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDd 120 (189)
T 2v71_A 44 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK---QVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444433332233333333344455555555444444333222 12334444555555666677777788888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhh
Q 001229 948 LVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDT 1014 (1119)
Q Consensus 948 l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdt 1014 (1119)
|-..+|.+..-++|+-..--+|==+++ =|=.||- |++.|+.++.+|+..+||=
T Consensus 121 lEr~~R~~~~SleD~e~kln~aiEr~a------lLE~El~--------EKe~l~~~~QRLkdE~rDL 173 (189)
T 2v71_A 121 LERAKRATIMSLEDFEQRLNQAIERNA------FLESELD--------EKESLLVSVQRLKDEARDL 173 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH--------HHHHHHCCC----------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH------HHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 888888888888887443322222221 1223332 4667777777777777763
No 168
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=43.15 E-value=14 Score=35.89 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhh-hhhhhhhHHHHHHHHHHhhhhh
Q 001229 979 AKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGE-LLVRLKEAEQAASVAEANFSGV 1045 (1119)
Q Consensus 979 ~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aage-llvrl~eaeea~~~a~~~~~~~ 1045 (1119)
++.|-|||..-|.. +...+.||..|+.++-+. +.....|+ +-..+.|||..+.++++||+.+
T Consensus 49 i~~Le~eL~e~r~~----~q~a~~e~e~Lr~e~~~l-~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KL 111 (120)
T 3i00_A 49 VSELEADLAEQQHL----RQQAADDCEFLRAELDEL-RRQREDTEKAQRSLSEIERKAQANEQRYSKL 111 (120)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HTTCC--------------------------
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777766643 444445555555444332 22222222 2346788999888888888643
No 169
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=42.74 E-value=6.6 Score=40.07 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=23.2
Q ss_pred hHHHHHHHHcC-C--Ccceeeecccccccccccc
Q 001229 152 GLPLVKNALAG-Y--NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 152 ~~pLV~~vL~G-y--N~tIfAYGQTGSGKTyTM~ 182 (1119)
+-+-++.++.| + ...+.-+|++|+|||+.+.
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 34667888854 3 3567889999999998763
No 170
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=42.59 E-value=13 Score=40.24 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=16.6
Q ss_pred cCC-Ccceeeecccccccccccc
Q 001229 161 AGY-NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 161 ~Gy-N~tIfAYGQTGSGKTyTM~ 182 (1119)
.|. ...++-||++|+|||+++.
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHHH
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 443 3557888889999999873
No 171
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=42.59 E-value=9.4 Score=43.84 Aligned_cols=25 Identities=44% Similarity=0.614 Sum_probs=19.2
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+|..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4556677876 677899999999774
No 172
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.55 E-value=83 Score=29.28 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=19.8
Q ss_pred HHHHHHhhhhhhhHH----HHHHHHHhhHHHHHHh
Q 001229 981 SVAAELSALRVERDR----EREFLKKENKSLKIQL 1011 (1119)
Q Consensus 981 ~laae~s~lr~erek----e~~~~~~en~~l~~ql 1011 (1119)
.|++||.++++|-++ |.+||++-|.-...++
T Consensus 36 ~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~ 70 (96)
T 3q8t_A 36 VVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456666666665543 7778888776655444
No 173
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=42.10 E-value=9.3 Score=44.57 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=20.1
Q ss_pred HHHHHHcCCCcceeeecccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyT 180 (1119)
++..++.|-+--++..++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45566666555688999999999986
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.07 E-value=10 Score=40.26 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=16.9
Q ss_pred HcCCCcceeeeccccccccccc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM 181 (1119)
-.|.-..++-||+.|+|||++.
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHH
Confidence 3454334899999999999876
No 175
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=41.95 E-value=8.3 Score=46.52 Aligned_cols=27 Identities=33% Similarity=0.302 Sum_probs=18.6
Q ss_pred HHHHHHcCCCcceeeecccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.|..++..-. ..+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~-~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKE-LAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSS-EEEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCC-ceEEECCCCCCHHHHHH
Confidence 4555554333 34567999999999974
No 176
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=41.79 E-value=5.1 Score=47.36 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=22.8
Q ss_pred HHhHhHHHHHHHHhhhhhhhhccccccccccccc
Q 001229 781 LENICTEQAAKIEQLNRLEVQEVPSHQNGNISFE 814 (1119)
Q Consensus 781 le~~c~~qa~~i~ql~~le~~~~~~~~~~~~~~~ 814 (1119)
+=+-|-++|-+|-+=|+-.|.++.+.|-.+..++
T Consensus 425 ~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~ 458 (499)
T 2dhr_A 425 LIEEQYQRVKALLLEKREVLERVAETLLERETLT 458 (499)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeC
Confidence 4556788888888777777777766665444443
No 177
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=41.65 E-value=1.7e+02 Score=28.42 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=36.0
Q ss_pred hhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Q 001229 989 LRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMI 1068 (1119)
Q Consensus 989 lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~ 1068 (1119)
||++.| .+.-+.=|+.||.-+=|. |+++|--++.-..-.+.+..-.++.+.|..|.=++.+-||.
T Consensus 17 LrAq~E-----CrN~T~lLq~qLTqAQe~----------l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~ 81 (121)
T 3mq7_A 17 LRAVME-----ARNVTHLLQQELTEAQKG----------FQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEIT 81 (121)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566544 244455667777665443 34444333334444444444444444444444444556666
Q ss_pred HHHHHH
Q 001229 1069 TMKQYL 1074 (1119)
Q Consensus 1069 t~~~~l 1074 (1119)
+|||-|
T Consensus 82 ~Lnq~L 87 (121)
T 3mq7_A 82 TLNHKL 87 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 178
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=41.32 E-value=1.3e+02 Score=31.02 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=23.3
Q ss_pred chhhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 001229 975 GSRFAKSVAAELSALRVERDREREFLKKE 1003 (1119)
Q Consensus 975 ~~~f~~~laae~s~lr~ereke~~~~~~e 1003 (1119)
...=|++|+.||+.||.+...+|-.++.|
T Consensus 111 DeakI~aL~~Ei~~Lr~qL~~~R~k~~~e 139 (175)
T 3lay_A 111 DTAKINAVAKEMESLGQKLDEQRVKRDVA 139 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999988888766544
No 179
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=41.10 E-value=33 Score=31.39 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1042 FSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1042 ~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
.-++.+||++|+++|+.+ +.||.+||+-.
T Consensus 33 L~eaL~EN~~Lh~~ie~~----~eEi~~Lk~en 61 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQK----DSEIARLRKEN 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 456789999999999987 45677776544
No 180
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=40.64 E-value=11 Score=43.25 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=18.7
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+..++.|.| ++..++||||||.+.
T Consensus 12 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCChHHHHH
Confidence 3455667866 567799999999773
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.62 E-value=15 Score=39.97 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=15.9
Q ss_pred Ccceeeecccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~ 182 (1119)
...++-||+.|+|||+++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CSEEEEESCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998863
No 182
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=40.15 E-value=9.5 Score=45.92 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=16.0
Q ss_pred Ccceeeecccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM~ 182 (1119)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3568889999999999874
No 183
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=40.07 E-value=12 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=19.5
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+|..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 4455677877 678899999999764
No 184
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=40.04 E-value=11 Score=41.88 Aligned_cols=18 Identities=44% Similarity=0.619 Sum_probs=15.7
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999875
No 185
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=39.75 E-value=10 Score=45.53 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=19.5
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+|..++.|.| ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 4556677876 677899999999875
No 186
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=39.68 E-value=9.8 Score=42.02 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=18.8
Q ss_pred HHHHHHcCCCcceeeecccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.+..++.| .++..++||+|||.++.
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 34566777 45667999999998764
No 187
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=39.18 E-value=9.3 Score=43.50 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=18.0
Q ss_pred HHHHHcCCCcceeeecccccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
|..++.|.+ ++..|+||+|||++..
T Consensus 102 i~~i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp HHHHTTTTE--EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCC--EEEEeCCCCCHHHHHH
Confidence 344556644 6778999999999863
No 188
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=39.15 E-value=15 Score=44.77 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=32.3
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
|.|..+ .|...|..-+.. +++.+-.|... ....|.|||||||||..
T Consensus 2 ~~~~~~-~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 555554 788888877665 45555566432 44679999999999964
No 189
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=38.03 E-value=8.8 Score=38.51 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=23.2
Q ss_pred HHHHHHHHc-CCC--cceeeecccccccccccc
Q 001229 153 LPLVKNALA-GYN--VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 153 ~pLV~~vL~-GyN--~tIfAYGQTGSGKTyTM~ 182 (1119)
-+-++.++. |+. ..+.-+|++|+|||..+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 466788886 654 467889999999998763
No 190
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=38.02 E-value=14 Score=40.31 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.2
Q ss_pred CCCcceeeeccccccccccc
Q 001229 162 GYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 162 GyN~tIfAYGQTGSGKTyTM 181 (1119)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 55778999999999999865
No 191
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=37.97 E-value=19 Score=37.88 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=22.3
Q ss_pred HHHhhHHHHHHHHcCCC-----cceeeeccccccccccc
Q 001229 148 FQVVGLPLVKNALAGYN-----VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 148 Y~~v~~pLV~~vL~GyN-----~tIfAYGQTGSGKTyTM 181 (1119)
|+.+...++..++.|+. ..|+-.|+.|||||+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 44444445555555543 35788999999999753
No 192
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=37.16 E-value=8.1 Score=38.84 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=21.2
Q ss_pred HHHHHHHHc-CCC--cceeeeccccccccccc
Q 001229 153 LPLVKNALA-GYN--VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 153 ~pLV~~vL~-GyN--~tIfAYGQTGSGKTyTM 181 (1119)
.+.++.++. |+. ..+.-+|++|+|||+.+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 356677775 542 35667899999999876
No 193
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.12 E-value=2.7e+02 Score=26.20 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhHHHHHHhhhh
Q 001229 994 DREREFLKKENKSLKIQLRDT 1014 (1119)
Q Consensus 994 eke~~~~~~en~~l~~qlrdt 1014 (1119)
-++|..+.+.|..|+.||.|+
T Consensus 75 r~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 567888999999999999986
No 194
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=37.10 E-value=3.6e+02 Score=27.65 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=12.3
Q ss_pred cCcchhhHHHHHHHHhhhhh
Q 001229 972 KGHGSRFAKSVAAELSALRV 991 (1119)
Q Consensus 972 ~g~~~~f~~~laae~s~lr~ 991 (1119)
+|.+|-=|+-.-+=|..||.
T Consensus 66 ~gtt~~~i~~m~~yI~llrE 85 (169)
T 3k29_A 66 DGTTSDAILKMKAYIKVVAI 85 (169)
T ss_dssp HCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHH
Confidence 47776666666665655554
No 195
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.56 E-value=3.7e+02 Score=30.75 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=18.7
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhh
Q 001229 983 AAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHA 1020 (1119)
Q Consensus 983 aae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~a 1020 (1119)
..|+..||. |.+-+++++..+..++.++=+-+|.
T Consensus 441 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 441 QHKETQLAE----ENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHH----HhhhhhhhhhhhhhhhHhcccHHHH
Confidence 445555544 3344677777777666655444443
No 196
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=36.49 E-value=8.8 Score=43.04 Aligned_cols=18 Identities=28% Similarity=0.518 Sum_probs=15.0
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
|..++..|+||||||++|
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 455677899999999987
No 197
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=36.03 E-value=17 Score=40.23 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=15.4
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457888999999999865
No 198
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=36.01 E-value=2.6e+02 Score=26.70 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=37.2
Q ss_pred hhhhhhhHHHhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001229 889 TDELRVDIESSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAK 968 (1119)
Q Consensus 889 t~elr~~le~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaak 968 (1119)
-.+||..|+..-.--.+++.|++.=+ ....|+..||.+-+.++..+-..|...||..-.
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~---------------------~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLA---------------------EDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccH
Confidence 34677777766554444444443211 223456778888888888777778888887644
Q ss_pred h
Q 001229 969 A 969 (1119)
Q Consensus 969 a 969 (1119)
|
T Consensus 81 ~ 81 (119)
T 3ol1_A 81 A 81 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 199
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=35.73 E-value=1.6e+02 Score=27.65 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 991 VERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKK 1054 (1119)
Q Consensus 991 ~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~ 1054 (1119)
.||++|-..+.+.-..|.....|-|.-|+-=||.+-|. |.-+..|..+...+.++..||.+
T Consensus 17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~I---e~nv~~a~~~v~~g~~eL~kA~~ 77 (109)
T 3hd7_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI---EYNVEHAVDYVERAVSDTKKAVK 77 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999999999999999999999886 66667777777777777777743
No 200
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.33 E-value=10 Score=41.17 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=14.4
Q ss_pred eeeecccccccccccc
Q 001229 167 LLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM~ 182 (1119)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999873
No 201
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=34.99 E-value=9 Score=43.51 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=16.3
Q ss_pred CCcceeeeccccccccccc
Q 001229 163 YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM 181 (1119)
.+.-++.+|.||||||.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 3567899999999999986
No 202
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=34.46 E-value=13 Score=44.62 Aligned_cols=19 Identities=37% Similarity=0.295 Sum_probs=15.5
Q ss_pred cceeeeccccccccccccC
Q 001229 165 VSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~G 183 (1119)
..++..|+.|||||+|+..
T Consensus 196 ~~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 4567899999999999743
No 203
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=34.45 E-value=15 Score=44.02 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=18.7
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+|..++.|.| ++..++||||||...
T Consensus 21 ~i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 21 LALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Confidence 3455667876 577899999999853
No 204
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.42 E-value=52 Score=28.33 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=27.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 001229 1039 EANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1039 ~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1076 (1119)
+.+...++++|..|..+|+.|+ +|+..|+++|.|
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~----~E~~~Lk~ll~e 62 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLA----KEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhh
Confidence 4566778888888888888775 588999999865
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=34.37 E-value=10 Score=38.25 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=21.7
Q ss_pred HHHHHHHHc-CCC--cceeeeccccccccccc
Q 001229 153 LPLVKNALA-GYN--VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 153 ~pLV~~vL~-GyN--~tIfAYGQTGSGKTyTM 181 (1119)
-+-++.++. |+. ..+.-+|++|||||+.+
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 366777884 443 45778899999999876
No 206
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.21 E-value=41 Score=30.79 Aligned_cols=37 Identities=35% Similarity=0.404 Sum_probs=27.3
Q ss_pred HHHHh---hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhc
Q 001229 1037 VAEAN---FSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAES 1077 (1119)
Q Consensus 1037 ~a~~~---~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~laes 1077 (1119)
+|++| .-++.+||++|+++|+.|+ .||.+||+-+-+.
T Consensus 33 lAE~RR~AL~eaL~EN~~Lh~~ie~l~----eEi~~lk~en~eL 72 (83)
T 1uii_A 33 VAEKRRKALYEALKENEKLHKEIEQKD----NEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 45554 3467899999999999975 5788888766543
No 207
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=34.16 E-value=15 Score=43.42 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCcceeeecccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyT 180 (1119)
.+|..++.|-+.-+++.++||||||.+
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 345566655455678899999999986
No 208
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.08 E-value=2.5e+02 Score=33.91 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=16.4
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+-...|...|.+|+|||+.|
T Consensus 35 ~~~~~~VaivG~pnvGKStLi 55 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLM 55 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHH
Confidence 455566788999999999754
No 209
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=33.97 E-value=18 Score=36.64 Aligned_cols=29 Identities=34% Similarity=0.165 Sum_probs=19.5
Q ss_pred HHHHHHHHc---CCCcceeeeccccccccccc
Q 001229 153 LPLVKNALA---GYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 153 ~pLV~~vL~---GyN~tIfAYGQTGSGKTyTM 181 (1119)
..+++.++. +-...|.-.|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 345555553 22346778899999999875
No 210
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=33.72 E-value=13 Score=44.19 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=18.3
Q ss_pred CCCcceeeeccccccccccccC
Q 001229 162 GYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 162 GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
-.++.++..|..|||||+|+..
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l~~ 41 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVLVH 41 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHH
Confidence 4467789999999999999853
No 211
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=33.68 E-value=17 Score=41.81 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=24.2
Q ss_pred CCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 141 NSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 141 ~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+..|.+++..+. ..+..| ++.++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 345776665543 233333 347899999999999876
No 212
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=33.66 E-value=15 Score=38.24 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=18.2
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+++++-.|-- +.-.|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 35555555543 445799999999876
No 213
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=33.44 E-value=15 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=18.0
Q ss_pred HHHcCCCcceeeeccccccccccc
Q 001229 158 NALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 158 ~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..-.|....++..|+||||||...
T Consensus 383 ~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 383 DMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hccccCCCcEEEEcCCCCCHHHHH
Confidence 333455557889999999999865
No 214
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.13 E-value=1.9e+02 Score=28.68 Aligned_cols=96 Identities=24% Similarity=0.376 Sum_probs=56.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHH
Q 001229 929 LGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLK 1008 (1119)
Q Consensus 929 ~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~ 1008 (1119)
..+---+.+|..|.++|..|-. |..+|+.-..+ .-..| +|--++|.+-|+++..+..|...|-
T Consensus 18 ~~~~~~~~~le~l~~~l~~l~~-------~l~~~~~e~~~---------L~~~l-~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 18 ASQKAAIENYNQLKEDYNTLKR-------ELSDRDDEVKR---------LREDI-AKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HTTTHHHHHHT---------HHHHH-HHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHH---------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334446667777776666552 33444433222 22222 2334567778888888888888888
Q ss_pred HHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001229 1009 IQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQID 1057 (1119)
Q Consensus 1009 ~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~ 1057 (1119)
+.|=| ||-.-|+.|......++..|++|+.|+.
T Consensus 81 asLFe----------------EAN~MVa~ar~~~~~~e~r~~~L~~ql~ 113 (135)
T 2e7s_A 81 ASLFD----------------EANNLVADARMEKYAIEILNKRLTEQLR 113 (135)
T ss_dssp HHHHH----------------HHHHHHHHTTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77755 3444445555555666777777776653
No 215
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=32.89 E-value=16 Score=37.11 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=18.2
Q ss_pred HHHHHHHc--CCCcceeeeccccccccccc
Q 001229 154 PLVKNALA--GYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~--GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 10 ~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 44444442 23345667899999999876
No 216
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=32.80 E-value=31 Score=41.51 Aligned_cols=84 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhh----hhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH---------
Q 001229 989 LRVERDREREFLKKENKSLKIQLRDTAEAVHAAGE----LLVRLKEAEQAASVAEANFSGVQQENEKLKKQ--------- 1055 (1119)
Q Consensus 989 lr~ereke~~~~~~en~~l~~qlrdtaeav~aage----llvrl~eaeea~~~a~~~~~~~~qe~~k~~~q--------- 1055 (1119)
+|.+-|+|+.-|....+.++.+.+-+-+|+..+=| |---++.||+++..-+.++..|++++++|..+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~ 408 (575)
T 2i1j_A 329 ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQ 408 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred -HHHHHhhhhhHHHHHHH
Q 001229 1056 -IDKLKRKHKMEMITMKQ 1072 (1119)
Q Consensus 1056 -~~klk~kh~~e~~t~~~ 1072 (1119)
|+.=-+..+.+|..|.+
T Consensus 409 ~l~~~~~~~~~~~~~~~~ 426 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQ 426 (575)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
No 217
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=32.60 E-value=11 Score=35.78 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.3
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999854
No 218
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=32.50 E-value=10 Score=37.56 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.2
Q ss_pred ceeeecccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~ 182 (1119)
.+.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45678999999999874
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=31.94 E-value=21 Score=43.75 Aligned_cols=16 Identities=44% Similarity=0.549 Sum_probs=14.6
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|+-||++|+|||++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999975
No 220
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=31.94 E-value=2e+02 Score=27.09 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhh
Q 001229 929 LGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVER 993 (1119)
Q Consensus 929 ~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~er 993 (1119)
.-|.-+|--|-+|+.+|-.|-+.+++.+-- ++.. ..=+..|++||--||+|-
T Consensus 30 mSKqELIqEYl~LE~~~s~le~e~~rlr~~--------~~~~-----~~~v~eLe~everL~~EN 81 (104)
T 3s9g_A 30 MSKQELIKEYLELEKSLSRMEDENNRLRLE--------SKRL-----DARVRELELELDRLRAEN 81 (104)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hccc-----hhhHHHHHHHHHHHHHHH
Confidence 345667888999999999998888776543 1111 245788999998888844
No 221
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=31.92 E-value=18 Score=42.79 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=19.4
Q ss_pred HHHHHHcCCCcceeeeccccccccccccC
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
++..++.|. .|+-||++|+|||+....
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHHHH
Confidence 334445554 578899999999998643
No 222
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=31.26 E-value=3.6e+02 Score=25.93 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhH----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Q 001229 994 DREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEA----EQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMIT 1069 (1119)
Q Consensus 994 eke~~~~~~en~~l~~qlrdtaeav~aagellvrl~ea----eea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t 1069 (1119)
|.....|..|-..|+.||-..-+...-|-|.+-||... |.-+.-.+.|....+..|..| ..-|||-+.++.-
T Consensus 40 e~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L----~~~kkkle~e~~~ 115 (129)
T 2fxo_A 40 EEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL----TAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555322 233333344443333333322 2334444555555
Q ss_pred HHHHH
Q 001229 1070 MKQYL 1074 (1119)
Q Consensus 1070 ~~~~l 1074 (1119)
|+.-|
T Consensus 116 Lk~~l 120 (129)
T 2fxo_A 116 LKRDI 120 (129)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 223
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=31.20 E-value=4.5e+02 Score=26.96 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhhhhHHHH
Q 001229 918 EELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRVERDRER 997 (1119)
Q Consensus 918 eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ereke~ 997 (1119)
+|+++-|+.=-.+++|+=-+-+||.-.+..+-..-|-.++-+.-.-. ==.+|-.|+..|.+.=+.||
T Consensus 16 ~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~-------------~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 16 EEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILEN-------------SKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 45555566556666666666666555555554444433332221110 01234444444444444444
Q ss_pred HHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHH----HHHhhhhhHHHHHHHH----HHHHHHHhhhhhHHHH
Q 001229 998 EFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASV----AEANFSGVQQENEKLK----KQIDKLKRKHKMEMIT 1069 (1119)
Q Consensus 998 ~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~----a~~~~~~~~qe~~k~~----~q~~klk~kh~~e~~t 1069 (1119)
+-..--.. -.+|+=.=|++..+=|=|+|+.+.-+.. .+++...+|-|...+- =++--|.-+|++|+..
T Consensus 83 ~~r~q~se----~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~ 158 (168)
T 3o0z_A 83 RDRGHDSE----MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNE 158 (168)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 32111000 0123334566666666677766655544 4445544444333332 2234566777777765
Q ss_pred HH
Q 001229 1070 MK 1071 (1119)
Q Consensus 1070 ~~ 1071 (1119)
.+
T Consensus 159 H~ 160 (168)
T 3o0z_A 159 HK 160 (168)
T ss_dssp HC
T ss_pred HH
Confidence 44
No 224
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=31.04 E-value=13 Score=37.15 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=12.6
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
|.-.|++|||||++|
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 225
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=31.00 E-value=23 Score=38.89 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=14.0
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.+.-.|++|||||+|+
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5667899999999987
No 226
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=30.90 E-value=13 Score=42.62 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=22.0
Q ss_pred CCCCChHHHHHHhhHHHHHHHHcCCCcceeeecccccccccccc
Q 001229 139 DSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 139 d~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.+..-|.+.+. .++.|.+ ++..|+||||||.+..
T Consensus 113 ~l~~~Q~~ai~--------~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 113 EPHWYQKDAVF--------EGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp CCCHHHHHHHH--------HHHHHSE--EEEECCSTTTHHHHHH
T ss_pred CCCHHHHHHHH--------HHHhcCC--cEEEeCCCCCHHHHHH
Confidence 44455555443 3445544 5678999999999864
No 227
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.78 E-value=2.1e+02 Score=27.05 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCcccccchHHHHHHHHHHhhcccC----------cccC-CchhHHhhhcChHHH
Q 001229 444 DDVNDLSDQIRQLKEELIRAKSDVHSGYFKGRNVRESLNQLRVSLNRSLM----------LPRI-DNELEEEVKVDEHDV 512 (1119)
Q Consensus 444 ~~v~~L~~~I~~Lk~EL~rlk~~~~~~~~~~~~~re~l~~lr~~l~~~~~----------l~~~-~~~~~ee~~~~e~~i 512 (1119)
..+..|+.+|..|+.|..+++ +....|...+.+... +-++ +|...+.....++++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr--------------~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~ 77 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLE--------------EEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDH 77 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHH
Confidence 456777777777777765543 334444444433111 1112 333444444556888
Q ss_pred HHHHHHHHHHHhhhc
Q 001229 513 SELRQQLAKLQSSYD 527 (1119)
Q Consensus 513 ~eL~~Qi~~l~~~~e 527 (1119)
+.|+.++..|+..+-
T Consensus 78 e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 78 SQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887764
No 228
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=30.65 E-value=15 Score=37.51 Aligned_cols=28 Identities=36% Similarity=0.441 Sum_probs=20.2
Q ss_pred HHHHHHHcC-C--Ccceeeeccccccccccc
Q 001229 154 PLVKNALAG-Y--NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~G-y--N~tIfAYGQTGSGKTyTM 181 (1119)
+-++.++.| + ...+.-+|++|+|||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 345667643 3 346778999999999875
No 229
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=30.62 E-value=5.7e+02 Score=28.00 Aligned_cols=25 Identities=8% Similarity=0.054 Sum_probs=12.7
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHh
Q 001229 995 REREFLKKENKSLKIQLRDTAEAVH 1019 (1119)
Q Consensus 995 ke~~~~~~en~~l~~qlrdtaeav~ 1019 (1119)
|||+.+.++...++.++-+.-..|.
T Consensus 136 ke~K~~~~~~~k~~k~~~~~~~~l~ 160 (350)
T 3aco_A 136 KETKEAEDGFRKAQKPWAKKLKEVE 160 (350)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544444443
No 230
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=30.58 E-value=12 Score=37.32 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=12.9
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3556799999999876
No 231
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=30.55 E-value=14 Score=43.58 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCcceeeeccccccccccc
Q 001229 154 PLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 154 pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.+|..+++|.+ ++..++||+|||.+.
T Consensus 32 ~~i~~il~g~d--~lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRD--CLVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCcHHHHHH
Confidence 34556678876 566789999999754
No 232
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.50 E-value=2.5e+02 Score=25.82 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=15.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001229 1036 SVAEANFSGVQQENEKLKKQIDKLKRKH 1063 (1119)
Q Consensus 1036 ~~a~~~~~~~~qe~~k~~~q~~klk~kh 1063 (1119)
..=++.....|.+.++.++.|.+||+++
T Consensus 54 ~~h~~ei~~le~~i~rhk~~i~~l~~~~ 81 (84)
T 1gmj_A 54 SHHAKEIERLQKEIERHKQSIKKLKQSE 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344555555566666666666666543
No 233
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=30.49 E-value=21 Score=44.70 Aligned_cols=51 Identities=25% Similarity=0.452 Sum_probs=37.1
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHH-HHHcCCC----cceeeeccccccccccc
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVK-NALAGYN----VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~-~vL~GyN----~tIfAYGQTGSGKTyTM 181 (1119)
..+||.|-+-+..-+++.+.+..|+.. .++.++. ..|+-||+.|+|||+..
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 467888877777767777777666653 3455554 46999999999999764
No 234
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=30.34 E-value=11 Score=40.21 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.6
Q ss_pred cceeeeccccccccccccC
Q 001229 165 VSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~G 183 (1119)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4589999999999999865
No 235
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=30.10 E-value=4.7e+02 Score=26.84 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=44.0
Q ss_pred HHHhhh------hHHHHhhhhh----hhhhhh-------hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhh-HHHH
Q 001229 1008 KIQLRD------TAEAVHAAGE----LLVRLK-------EAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKM-EMIT 1069 (1119)
Q Consensus 1008 ~~qlrd------taeav~aage----llvrl~-------eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~-e~~t 1069 (1119)
=.|||| |-.+|.-.+. |=.||. +|.+++..|+++...++++..++.++.+|+ ..|.. ++.-
T Consensus 57 ~~qlre~~d~gtt~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf-elHrqiwqaE 135 (169)
T 3k29_A 57 IRQLREQLDDGTTSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT-RLHKEEWMKE 135 (169)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 456665 7888888888 333333 344566677777888888888899999999 78877 4443
Q ss_pred HH
Q 001229 1070 MK 1071 (1119)
Q Consensus 1070 ~~ 1071 (1119)
++
T Consensus 136 ~k 137 (169)
T 3k29_A 136 AL 137 (169)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 236
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.88 E-value=3.1e+02 Score=24.98 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=53.3
Q ss_pred HhhHHHHHHHHHHhHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001229 898 SSRRHAERVESELRLEKKVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEV 962 (1119)
Q Consensus 898 ~~r~~~ek~~~el~~ek~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~v 962 (1119)
..=--..-++||++.-|.=...|.+..+-|-.|++-......-|++-|...=+|=|.+..-|++|
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~v 81 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 33334556889999999999999999999999999999999999999988888888887766654
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=29.50 E-value=14 Score=37.64 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.4
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|.-.|++|||||+++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4666799999999876
No 238
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=29.32 E-value=25 Score=42.93 Aligned_cols=17 Identities=47% Similarity=0.460 Sum_probs=15.1
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
+.|+-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46899999999999876
No 239
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.27 E-value=2.1e+02 Score=27.05 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCc----ch---hhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHH
Q 001229 936 EHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGH----GS---RFAKSVAAELSALRVERDREREFLKKENKSLK 1008 (1119)
Q Consensus 936 e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~----~~---~f~~~laae~s~lr~ereke~~~~~~en~~l~ 1008 (1119)
|+|..|.++-..|=.--.+..+-|+...-.--+.-.+|- .+ .|.+..|++. +..++++.+.|+.|+.+|+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a---~~~~~~~~e~Lq~E~erLr 88 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVA---RQRLREDHSQLQAECERLR 88 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 688889988888877777777778777777777556662 22 4999999875 4456799999999999999
Q ss_pred HHhhhhHH
Q 001229 1009 IQLRDTAE 1016 (1119)
Q Consensus 1009 ~qlrdtae 1016 (1119)
..++..=|
T Consensus 89 ~~v~~lEe 96 (100)
T 1go4_E 89 GLLRAMER 96 (100)
T ss_dssp HHHTTCC-
T ss_pred HHHHHHhc
Confidence 99886543
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=29.00 E-value=24 Score=39.29 Aligned_cols=17 Identities=41% Similarity=0.556 Sum_probs=14.4
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
..|.-.|++|+|||+|+
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35667899999999987
No 241
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=28.94 E-value=19 Score=44.34 Aligned_cols=25 Identities=44% Similarity=0.614 Sum_probs=18.9
Q ss_pred HHHHHHcCCCcceeeeccccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 3445577866 677899999999874
No 242
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=28.90 E-value=22 Score=43.62 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=28.2
Q ss_pred EEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 132 FAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 132 F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
-.||.|.+ ++.... .++..+..+....|+-||++|+|||....+
T Consensus 177 ~~ld~iiG----~~~~i~----~l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 177 DSLDPVIG----RSKEIQ----RVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SCSCCCCC----CHHHHH----HHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCCccC----chHHHH----HHHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 35666655 333333 334444456666689999999999987644
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=28.76 E-value=13 Score=36.90 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.1
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|.-.|++|||||+.+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999865
No 244
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=28.53 E-value=20 Score=45.41 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=18.9
Q ss_pred HHHHHcCCCcceeeecccccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
|..++.|.| ++..++||||||.+..
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~~ 281 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVSI 281 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHHH
Confidence 445577876 5678999999998754
No 245
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=28.38 E-value=20 Score=43.81 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=27.7
Q ss_pred EcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 133 AFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 133 ~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.||.|++ ++.... .+++.+.......++-||++|+|||+.+.+
T Consensus 184 ~~d~~iG----r~~~i~----~l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 184 GIDPLIG----REKELE----RAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp CSCCCCS----CHHHHH----HHHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred CCCCccC----CHHHHH----HHHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 5666665 333333 344444445556688899999999998754
No 246
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=28.34 E-value=14 Score=37.52 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.6
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.+.-.|++|+|||++|
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999987
No 247
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.32 E-value=21 Score=41.80 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=15.2
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
..|+-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57889999999999986
No 248
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=28.29 E-value=2.1e+02 Score=24.72 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 991 VERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKK 1054 (1119)
Q Consensus 991 ~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~ 1054 (1119)
.||++|-..|-.....|..=..|-|.-|+.=||+|-|+ |.=+..|..+...+..+..||.+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~I---e~nv~~a~~~v~~g~~eL~kA~~ 62 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSI---EANVESSEVHVERASDQLQRAAY 62 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999999999999999999999887 55666666666666666666654
No 249
>3ts9_A Interferon-induced helicase C domain-containing P; helix bundle, fancm helicase, super family 2 helicase, SF2 H DEXD/H helicase; 2.00A {Mus musculus}
Probab=28.25 E-value=56 Score=32.55 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=39.7
Q ss_pred HHHHhHHHhhHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001229 907 ESELRLEKKVTEEL---DDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEG 958 (1119)
Q Consensus 907 ~~el~~ek~c~eel---~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~g 958 (1119)
+......+-|++=| +|||+ |-.++||+..|.=|++=|++.-++.-.+.++
T Consensus 51 ~~~~r~~rvcAeHLRkYNdAL~--IndtiRm~DAl~~L~~Fy~~e~~~k~~~~~~ 103 (138)
T 3ts9_A 51 KDGNRKDRVCAEHLRKYNEALQ--INDTIRMIDAYSHLETFYTDEKEKKFAVLND 103 (138)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHH--HHHHSCHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HhhhHHHHHHHHHHHHhhHHHH--hccHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 44456677899988 89986 7899999999999999999987776554443
No 250
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=28.13 E-value=2.2e+02 Score=32.41 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=19.6
Q ss_pred HhhhhhhhHHHHHHHHHhhHHHHHHhhhhH-HHHhhh
Q 001229 986 LSALRVERDREREFLKKENKSLKIQLRDTA-EAVHAA 1021 (1119)
Q Consensus 986 ~s~lr~ereke~~~~~~en~~l~~qlrdta-eav~aa 1021 (1119)
|..+-.+.+++|+-..+....|+..+..+- ..|+.|
T Consensus 103 l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~leka 139 (406)
T 4dyl_A 103 LSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKL 139 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666665555555 444443
No 251
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=28.13 E-value=78 Score=23.55 Aligned_cols=26 Identities=42% Similarity=0.601 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001229 1043 SGVQQENEKLKKQIDKLKRKHKMEMITMKQ 1072 (1119)
Q Consensus 1043 ~~~~qe~~k~~~q~~klk~kh~~e~~t~~~ 1072 (1119)
+.+.||..-|||+|.-|| -||..+||
T Consensus 5 aalkqeiaalkkeiaalk----feiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALK----FEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHc
Confidence 456778888888888775 57888887
No 252
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=27.81 E-value=1.3e+02 Score=30.49 Aligned_cols=51 Identities=29% Similarity=0.279 Sum_probs=41.5
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 001229 1026 VRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYLAE 1076 (1119)
Q Consensus 1026 vrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~lae 1076 (1119)
-+|+|||.-+..|+.....+|.+.++|--.++.-|.||+.=-..|.+-|.+
T Consensus 84 ~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~e 134 (155)
T 2efr_A 84 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK 134 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888889999999999999999988888888888766666665544
No 253
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.75 E-value=52 Score=30.08 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=40.9
Q ss_pred HHHHHH--HHHhHHHHHHHH---------HHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhh
Q 001229 949 VSRHRA--IMEGVAEVKRAA---------AKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQLR 1012 (1119)
Q Consensus 949 ~~~hr~--i~~gi~~vk~aa---------akag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlr 1012 (1119)
++|.|+ |.+++..++... .|+++=.....+|+.|-.+...+..+. +.|+.+|..|+.+|.
T Consensus 13 ~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~----~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 13 LERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE----DLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 355554 677777777654 334443334568888888887777654 458999999998875
No 254
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=27.46 E-value=22 Score=45.40 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=18.2
Q ss_pred HHHHHHcCCCcceeeecccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTyT 180 (1119)
+|..++.|.+ ++..|+||||||.+
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 3455677754 78899999999954
No 255
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=27.38 E-value=66 Score=28.94 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHH--HHHhHHHHHH---------HHHHhcccCcchhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHh
Q 001229 945 YNDLVSRHRA--IMEGVAEVKR---------AAAKAGAKGHGSRFAKSVAAELSALRVERDREREFLKKENKSLKIQL 1011 (1119)
Q Consensus 945 ~~~l~~~hr~--i~~gi~~vk~---------aaakag~~g~~~~f~~~laae~s~lr~ereke~~~~~~en~~l~~ql 1011 (1119)
||. ++|.|+ |.+++..++. .++|++.=.....||+.|-.+...+.. |.+.|+.||..|+.+|
T Consensus 5 HN~-~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~----e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 5 HNE-MEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH----QIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
No 256
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=27.31 E-value=13 Score=43.07 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=19.7
Q ss_pred HHcCCCcceeeeccccccccccc
Q 001229 159 ALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 159 vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
++.|++-.|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999865
No 257
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=27.10 E-value=12 Score=37.82 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=15.2
Q ss_pred ceeeeccccccccccccC
Q 001229 166 SLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~G 183 (1119)
.++-||+.|+|||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999998765
No 258
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=27.04 E-value=13 Score=40.54 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=16.6
Q ss_pred HHcCCCcceeeeccccccccccc
Q 001229 159 ALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 159 vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
++.|++-.|...|++|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 67899999999999999999865
No 259
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=26.86 E-value=5.9e+02 Score=26.92 Aligned_cols=22 Identities=55% Similarity=0.812 Sum_probs=15.3
Q ss_pred HHHHhcccCcchhhHHHHHHHHhhh
Q 001229 965 AAAKAGAKGHGSRFAKSVAAELSAL 989 (1119)
Q Consensus 965 aaakag~~g~~~~f~~~laae~s~l 989 (1119)
.|||||--|.| |+ -.|.||..|
T Consensus 150 EAArAGe~GrG--Fa-VVA~eIr~L 171 (309)
T 2ch7_A 150 EAARAGEAGRG--FA-VVADEIRKL 171 (309)
T ss_dssp HHHTTCTTHHH--HH-HHHHHHHHH
T ss_pred HHHhcCCCCCc--cH-HHHHHHHHH
Confidence 47888877754 76 567777666
No 260
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=26.63 E-value=14 Score=36.32 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=13.7
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|.-.|+.|||||+.+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999875
No 261
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=26.39 E-value=17 Score=39.95 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=14.0
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35566799999999987
No 262
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=26.34 E-value=13 Score=39.24 Aligned_cols=19 Identities=21% Similarity=0.052 Sum_probs=16.0
Q ss_pred cceeeeccccccccccccC
Q 001229 165 VSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~G 183 (1119)
..++-||.+|+|||..++|
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4577889999999998866
No 263
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=26.32 E-value=22 Score=44.32 Aligned_cols=26 Identities=38% Similarity=0.344 Sum_probs=18.5
Q ss_pred HHHHHcCCCcceeeeccccccccccccC
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
|..++.+ ..++..|+.|||||+|+..
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHHHH
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHHHH
Confidence 3444432 3467899999999999754
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=26.14 E-value=19 Score=44.83 Aligned_cols=52 Identities=27% Similarity=0.420 Sum_probs=35.8
Q ss_pred eeEEcCeecCCCCChHHHHHHhhHHHHHH-HHcC----CCcceeeeccccccccccc
Q 001229 130 RKFAFDSVLDSNSNQEDIFQVVGLPLVKN-ALAG----YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 130 k~F~FD~VFd~~asQeeVY~~v~~pLV~~-vL~G----yN~tIfAYGQTGSGKTyTM 181 (1119)
..+.||.|.+.+..-+.+.+.+..|+... ++.. ....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 35788888887776667776666555432 2222 2345899999999999865
No 265
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=26.04 E-value=22 Score=42.63 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=18.6
Q ss_pred HHHHHcCCCcceeeeccccccccccccC
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
|..++. +..++..|+.|||||+|+..
T Consensus 198 v~~~~~--~~~~~I~G~pGTGKTt~i~~ 223 (574)
T 3e1s_A 198 LDQLAG--HRLVVLTGGPGTGKSTTTKA 223 (574)
T ss_dssp HHHHTT--CSEEEEECCTTSCHHHHHHH
T ss_pred HHHHHh--CCEEEEEcCCCCCHHHHHHH
Confidence 344443 35677899999999998743
No 266
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=26.02 E-value=16 Score=36.88 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=12.7
Q ss_pred eeeeccccccccccc
Q 001229 167 LLSYGQTGSGKTYTM 181 (1119)
Q Consensus 167 IfAYGQTGSGKTyTM 181 (1119)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999976
No 267
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=25.98 E-value=22 Score=44.45 Aligned_cols=19 Identities=37% Similarity=0.295 Sum_probs=15.5
Q ss_pred cceeeeccccccccccccC
Q 001229 165 VSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~G 183 (1119)
..++..|+.|||||+|+..
T Consensus 376 ~~~lI~GppGTGKT~~i~~ 394 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSAT 394 (802)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
Confidence 3467899999999999743
No 268
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=25.98 E-value=17 Score=35.08 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=13.4
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|+-.|..|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4788999999999853
No 269
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.80 E-value=2.6e+02 Score=27.10 Aligned_cols=18 Identities=28% Similarity=0.163 Sum_probs=7.9
Q ss_pred HHHHHHHHhhHHHHHHhh
Q 001229 995 REREFLKKENKSLKIQLR 1012 (1119)
Q Consensus 995 ke~~~~~~en~~l~~qlr 1012 (1119)
+.-..|+...-.|..+|-
T Consensus 40 ~~v~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 270
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=25.73 E-value=17 Score=40.78 Aligned_cols=19 Identities=42% Similarity=0.499 Sum_probs=14.5
Q ss_pred cCCCcceeeeccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM 181 (1119)
.|.+ +.-.|+||||||+++
T Consensus 174 ~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp TTCC--EEEEESSSSCHHHHH
T ss_pred cCCE--EEEECCCCCCHHHHH
Confidence 5554 445699999999987
No 271
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=25.68 E-value=20 Score=43.31 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=17.9
Q ss_pred CCcceeeeccccccccccccC
Q 001229 163 YNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM~G 183 (1119)
.++.++..|..|||||+||..
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~~ 34 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVITN 34 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHHH
Confidence 467788899999999999854
No 272
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.63 E-value=52 Score=27.60 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 001229 1044 GVQQENEKLKKQIDKLKRKHK 1064 (1119)
Q Consensus 1044 ~~~qe~~k~~~q~~klk~kh~ 1064 (1119)
.+.+||+.|+++++.|++.|+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444
No 273
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.54 E-value=4.3e+02 Score=24.87 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=44.5
Q ss_pred HHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001229 985 ELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDK 1058 (1119)
Q Consensus 985 e~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~k 1058 (1119)
+--++|.+-|+++..+..|...|-+.|=| ||-.-|+.|......++..|++|+.||..
T Consensus 37 eE~~~R~~aE~~~~~ie~ElEeLTasLFe----------------EAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 37 KENELRTKAEEEADKLNKEVEDLTASLFD----------------EANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33466788888888888888888888855 55666677777777888889999888753
No 274
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=25.50 E-value=28 Score=37.17 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=15.4
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999876
No 275
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=25.46 E-value=17 Score=40.33 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=15.3
Q ss_pred cCCCcceeeecccccccccccc
Q 001229 161 AGYNVSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 161 ~GyN~tIfAYGQTGSGKTyTM~ 182 (1119)
.|. .+.-.|+||||||+++-
T Consensus 170 ~g~--~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHHH
Confidence 554 45667999999998763
No 276
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=25.41 E-value=22 Score=38.81 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=14.7
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
..|.-.|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356667999999999984
No 277
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=25.27 E-value=17 Score=37.08 Aligned_cols=18 Identities=39% Similarity=0.434 Sum_probs=14.5
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
..+.-+|++|||||+.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 346668999999999873
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=25.26 E-value=18 Score=35.48 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=13.0
Q ss_pred ceeeecccccccccc
Q 001229 166 SLLSYGQTGSGKTYT 180 (1119)
Q Consensus 166 tIfAYGQTGSGKTyT 180 (1119)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 279
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=25.22 E-value=15 Score=39.58 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=15.2
Q ss_pred CCcceeeeccccccccccc
Q 001229 163 YNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 163 yN~tIfAYGQTGSGKTyTM 181 (1119)
|+-+|...|++|+|||+.|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3456778899999999866
No 280
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=25.08 E-value=17 Score=36.13 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.3
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999865
No 281
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=24.98 E-value=1.5e+02 Score=25.07 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1027 RLKEAEQAASVAEANFSGVQQENEK---LKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1027 rl~eaeea~~~a~~~~~~~~qe~~k---~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
||+.+...+..=+.....+.++.+. -|+.+=+.|-+-++||.|-..+|
T Consensus 1 rl~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 1 RMKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444444444444444443 36777788889999999999988
No 282
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=24.94 E-value=4.8e+02 Score=25.24 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHH----H
Q 001229 976 SRFAKSVAAELSALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENE----K 1051 (1119)
Q Consensus 976 ~~f~~~laae~s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~----k 1051 (1119)
.-|-.=|.-||+-||.+.+.=.+.. |.+.||.|.- -|.-+....+.+-..-||.| .
T Consensus 31 ~~~sDPL~~ELeRLr~~~d~~~K~H--E~kklqLkse------------------~e~E~ae~k~KYD~~lqe~ese~~~ 90 (115)
T 3vem_A 31 PVFNDPFLHELEKLRRESENSKKTF--EEKKSILKAE------------------LERKMAEVQAEFRRKFHEVEAEHNT 90 (115)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456668889998887655433322 4444444431 11223333344444444433 3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhc
Q 001229 1052 LKKQIDKLKRKHKMEMITMKQYLAES 1077 (1119)
Q Consensus 1052 ~~~q~~klk~kh~~e~~t~~~~laes 1077 (1119)
-+|.||.+. ..+.|||.|||.
T Consensus 91 kkK~le~~~-----~kV~mNk~LAe~ 111 (115)
T 3vem_A 91 RTTKIEKDK-----NLVIMNKLLANA 111 (115)
T ss_dssp HHHHHHHHH-----HHHHHHHHHTTT
T ss_pred HHHHHHHHH-----HHHHHHHHHHHH
Confidence 345555553 357899999985
No 283
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=24.70 E-value=6.9e+02 Score=27.02 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=15.6
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHhhhh
Q 001229 995 REREFLKKENKSLKIQLRDTAEAVHAAG 1022 (1119)
Q Consensus 995 ke~~~~~~en~~l~~qlrdtaeav~aag 1022 (1119)
||++.+..+...++..|-++..+|.-|=
T Consensus 127 ke~K~~~~~~~k~~k~~~~~~~~l~KaK 154 (337)
T 2x3v_A 127 KETKEAEDGFRKAQKPWAKKMKELEAAK 154 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666555555443
No 284
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=24.52 E-value=36 Score=38.54 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=14.1
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|.-.|++|||||+|+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 5677899999999987
No 285
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=24.42 E-value=20 Score=35.19 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.2
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
..|+..|..|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35888999999999864
No 286
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.27 E-value=3.6e+02 Score=26.03 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=46.3
Q ss_pred hhHHHHHHhhhhHHHHhhhhhhhhhhhhHHH----HHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1003 ENKSLKIQLRDTAEAVHAAGELLVRLKEAEQ----AASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1003 en~~l~~qlrdtaeav~aagellvrl~eaee----a~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
...+|+++| |...+.-+ -|-.+|.|+|+ ++..++.....+|.+..+++.+|...-+.|. ++-.+|-.|
T Consensus 46 ~iq~L~~el-~~l~~~~~--sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq-~Ll~vKl~L 117 (131)
T 3tnu_A 46 TMQNLEIEL-QSQLSMKA--SLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK-ILLDVKTRL 117 (131)
T ss_dssp HHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 556666665 22223233 24467888876 4455667778889999999999999999996 555556554
No 287
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=24.25 E-value=20 Score=36.85 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=9.1
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|.-.|++|||||+++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999876
No 288
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=24.17 E-value=20 Score=43.39 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccc
Q 001229 140 SNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 140 ~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
...-|.+++.. +++|. .++..|+||||||...
T Consensus 26 l~~~Q~~~i~~--------i~~~~--~~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 26 LFPPQAEAVEK--------VFSGK--NLLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCCHHHHHH--------HTTCS--CEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHH--------HhCCC--cEEEEcCCccHHHHHH
Confidence 34557766655 34554 4678899999999865
No 289
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.16 E-value=5.7e+02 Score=25.84 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=49.1
Q ss_pred hhhhhhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh---hh
Q 001229 987 SALRVERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKR---KH 1063 (1119)
Q Consensus 987 s~lr~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~---kh 1063 (1119)
-++|.+-|+++..+..|-..|-+.|=| ||-.=|+.|......++..|++|++|+..-.. -+
T Consensus 71 ~~~R~~aE~~~~~ie~ElEeLTasLFe----------------EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 71 NELRTKAEEEADKLNKEVEDLTASLFD----------------EANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888777755 55556666777778888889999888754432 34
Q ss_pred hhHHHHHHHHH
Q 001229 1064 KMEMITMKQYL 1074 (1119)
Q Consensus 1064 ~~e~~t~~~~l 1074 (1119)
..++..||+.+
T Consensus 135 q~ql~~LK~v~ 145 (154)
T 2ocy_A 135 TLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 290
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.03 E-value=1e+03 Score=28.68 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccCcchhhHHHHHHHHhhhhh
Q 001229 915 KVTEELDDALSRAVLGHARMVEHYADLQEKYNDLVSRHRAIMEGVAEVKRAAAKAGAKGHGSRFAKSVAAELSALRV 991 (1119)
Q Consensus 915 ~c~eel~~al~~a~~ghar~~e~y~~l~e~~~~l~~~hr~i~~gi~~vk~aaakag~~g~~~~f~~~laae~s~lr~ 991 (1119)
+=.+..-++-++..+=|-+.|++ .+++....++..+.++.+-=--+-++-.++|.+. =++.|..||..|+-
T Consensus 511 ~~~~~~~~~~~~~~~e~~~ql~~--kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~ei~~l~~ 581 (592)
T 1f5n_A 511 RKNEQMMEQKERSYQEHLKQLTE--KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK----ESRIMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44455556666777777777766 6777777888877777765555555566677543 24566666666654
No 291
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=23.97 E-value=24 Score=40.30 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.7
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999874
No 292
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=23.88 E-value=39 Score=41.07 Aligned_cols=48 Identities=29% Similarity=0.413 Sum_probs=35.4
Q ss_pred eEEcCeecCCCCChHHHHHHhhHHHHHHHHcCCCcceeeeccccccccccccC
Q 001229 131 KFAFDSVLDSNSNQEDIFQVVGLPLVKNALAGYNVSLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 131 ~F~FD~VFd~~asQeeVY~~v~~pLV~~vL~GyN~tIfAYGQTGSGKTyTM~G 183 (1119)
.|..-.=|.|...|..-+.. +++.+-.|... ....|.|||||||||-.
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 46777778999999888765 45555566422 45579999999999964
No 293
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=23.88 E-value=18 Score=35.70 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.2
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.+.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3566799999999976
No 294
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=23.82 E-value=19 Score=35.33 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=13.3
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999765
No 295
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=23.67 E-value=19 Score=43.82 Aligned_cols=20 Identities=40% Similarity=0.335 Sum_probs=15.5
Q ss_pred HcCCCcceeeeccccccccccc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..|. .++..|+||||||...
T Consensus 37 ~~~~--~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 37 LEGK--NALISIPTASGKTLIA 56 (720)
T ss_dssp GGTC--EEEEECCGGGCHHHHH
T ss_pred cCCC--cEEEEcCCccHHHHHH
Confidence 4554 4788999999999764
No 296
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=23.34 E-value=36 Score=37.10 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=14.3
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
...|.-.|++|||||+.+
T Consensus 31 ~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345667899999999875
No 297
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=23.32 E-value=25 Score=40.42 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=18.4
Q ss_pred HHHHHcCCCcceeeecccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyT 180 (1119)
+..++.|.+. ++..|+||||||.+
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4456777664 56789999999986
No 298
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=23.25 E-value=21 Score=34.72 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.2
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
..|+-.|..|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999864
No 299
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=23.13 E-value=2.1e+02 Score=24.39 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 001229 991 VERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLK 1053 (1119)
Q Consensus 991 ~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~ 1053 (1119)
.+|++|-..|-+....|..=.+|-|.-|+.=||+|-|. |.=+..|..+...+..+..||.
T Consensus 5 ~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~I---e~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 5 HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSI---EANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 47888888999999999999999999999999999886 4455555555555555554443
No 300
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.86 E-value=4.3e+02 Score=23.96 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhh
Q 001229 1043 SGVQQENEKLKKQIDKLKRKH 1063 (1119)
Q Consensus 1043 ~~~~qe~~k~~~q~~klk~kh 1063 (1119)
+++|-..+-|+.+|.=||+-|
T Consensus 66 ~dLE~kvesL~eEl~fLkk~h 86 (86)
T 3swk_A 66 LDLERKVESLQEEIAFLKKLH 86 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 445555555555555555554
No 301
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=22.70 E-value=23 Score=37.82 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=15.4
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
..|+-||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58999999999999876
No 302
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=22.69 E-value=19 Score=36.43 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=12.9
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.+.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999876
No 303
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=22.64 E-value=21 Score=36.87 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.9
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.+.-.|++|||||+.+
T Consensus 25 ~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLI 40 (218)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 304
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=22.56 E-value=17 Score=37.32 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=15.3
Q ss_pred ceeeeccccccccccccC
Q 001229 166 SLLSYGQTGSGKTYTMWG 183 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~G 183 (1119)
.++-||..|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467899999999988765
No 305
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=22.50 E-value=21 Score=36.47 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.7
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.+.-.|++|+|||+++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4667899999999987
No 306
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.49 E-value=6.7e+02 Score=26.08 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=12.5
Q ss_pred hHHHHHHHHhhhhhhhHHH
Q 001229 978 FAKSVAAELSALRVERDRE 996 (1119)
Q Consensus 978 f~~~laae~s~lr~ereke 996 (1119)
=++.|-.||+.||..++.=
T Consensus 89 ~~~~Lq~el~~l~~~~~~l 107 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQL 107 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777888777644443
No 307
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.41 E-value=3.9e+02 Score=26.99 Aligned_cols=75 Identities=23% Similarity=0.282 Sum_probs=41.1
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHH----HHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001229 996 EREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAA----SVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMK 1071 (1119)
Q Consensus 996 e~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~----~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~ 1071 (1119)
+-+.|+.|...|+..++|=.|.+..=.-++-.|+..=.|+ .+++++...+++||.+| ++.+=++-..|-..||
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L---V~RWM~rk~qEAe~MN 145 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL---VARWLKKTEKETEAMN 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3444666666777777777766666666666666655443 34555555666666554 3333333445555555
Q ss_pred HH
Q 001229 1072 QY 1073 (1119)
Q Consensus 1072 ~~ 1073 (1119)
.-
T Consensus 146 ~a 147 (152)
T 3a7p_A 146 SE 147 (152)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 308
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.33 E-value=2.2e+02 Score=26.35 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=41.8
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 1017 AVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQYL 1074 (1119)
Q Consensus 1017 av~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~l 1074 (1119)
.-...|..||.. .-++|...-++|...++.+.+++.++++.+.++++.=-..|.+.+
T Consensus 55 vy~~iG~vfv~~-~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 55 VYKTVGTLIVKT-TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp EEEEETTEEEEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888875 456677777788888888888888888888877666555555555
No 309
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=22.33 E-value=26 Score=40.33 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=13.3
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
-++..|+||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4677899999999873
No 310
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=22.21 E-value=35 Score=43.84 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=17.5
Q ss_pred HHHHHHcCCCcceeeeccccccccc
Q 001229 155 LVKNALAGYNVSLLSYGQTGSGKTY 179 (1119)
Q Consensus 155 LV~~vL~GyN~tIfAYGQTGSGKTy 179 (1119)
.+..++.|.| +++.|+||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4455667865 6778999999994
No 311
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.12 E-value=50 Score=28.05 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=19.2
Q ss_pred HHHHHhHhHHHHHHHHhhhhh
Q 001229 778 ENELENICTEQAAKIEQLNRL 798 (1119)
Q Consensus 778 e~~le~~c~~qa~~i~ql~~l 798 (1119)
-.+||..|.++-.||+-||+|
T Consensus 27 v~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 27 IQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999998
No 312
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.02 E-value=1.7e+02 Score=28.87 Aligned_cols=71 Identities=15% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCcccccchHHHHHHHHHHhhcccCcccCCchhHHhhhcChHHHHHHHHHHHHHH
Q 001229 444 DDVNDLSDQIRQLKEELIRAKSDVHSGYFKGRNVRESLNQLRVSLNRSLMLPRIDNELEEEVKVDEHDVSELRQQLAKLQ 523 (1119)
Q Consensus 444 ~~v~~L~~~I~~Lk~EL~rlk~~~~~~~~~~~~~re~l~~lr~~l~~~~~l~~~~~~~~ee~~~~e~~i~eL~~Qi~~l~ 523 (1119)
++.-.++.++..|+.++..+...++. +...+..++..+... ..++....+++.+|+.++..|+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~-------lK~el~~~~~k~e~~----------~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYD-------LKHELIAAQIKAESS----------AKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhcccCC
Q 001229 524 SSYDKSSK 531 (1119)
Q Consensus 524 ~~~e~~~~ 531 (1119)
..+++..+
T Consensus 131 ~~~~~~~~ 138 (138)
T 3hnw_A 131 TELNDSKK 138 (138)
T ss_dssp HHHHHC--
T ss_pred HHHHhhcC
No 313
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=22.01 E-value=2.9e+02 Score=29.41 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=17.2
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHhhhhh
Q 001229 995 REREFLKKENKSLKIQLRDTAEAVHAAGE 1023 (1119)
Q Consensus 995 ke~~~~~~en~~l~~qlrdtaeav~aage 1023 (1119)
|||+.+...-..++..|.++...|.-|=.
T Consensus 114 kerK~~~~~~~k~~k~~~~~~~~l~kaKk 142 (290)
T 3i2w_A 114 KERKDLEDLFKKAQKPWAKLLAKVEKAKA 142 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666665555554433
No 314
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.93 E-value=94 Score=30.03 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=28.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001229 1039 EANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQY 1073 (1119)
Q Consensus 1039 ~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~ 1073 (1119)
-+|....|+|.++|+.++..|+++.+.-..+|..+
T Consensus 10 ~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 10 LERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999999999999998766666554
No 315
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=21.86 E-value=23 Score=34.53 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.5
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999853
No 316
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=21.84 E-value=27 Score=40.00 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=15.4
Q ss_pred HcCCCcceeeeccccccccccc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM 181 (1119)
+.|.| ++..|+||||||...
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 45554 677899999999874
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=21.79 E-value=23 Score=37.52 Aligned_cols=15 Identities=53% Similarity=0.534 Sum_probs=12.6
Q ss_pred ceeeecccccccccc
Q 001229 166 SLLSYGQTGSGKTYT 180 (1119)
Q Consensus 166 tIfAYGQTGSGKTyT 180 (1119)
.|+-.|++|||||+.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367789999999974
No 318
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.67 E-value=75 Score=34.56 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=21.0
Q ss_pred HhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001229 1002 KENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKR 1061 (1119)
Q Consensus 1002 ~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~ 1061 (1119)
.|..-|+.||.+.+-.=+..+. --|+++.+......+.|-..+.++...|++||++||.
T Consensus 31 ~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 31 REAAVLREQLENAVGSHAPTRS-ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp ---------------------C-CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566433222222222 5567776665555555555445555555555555543
No 319
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=21.43 E-value=24 Score=34.03 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=13.7
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|+-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999864
No 320
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=21.37 E-value=31 Score=44.22 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=17.3
Q ss_pred HHHHcCCCcceeeeccccccccccc
Q 001229 157 KNALAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 157 ~~vL~GyN~tIfAYGQTGSGKTyTM 181 (1119)
..++.|.| ++..++||||||...
T Consensus 96 ~~l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 96 SCIDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHHHTCE--EEEECCTTSCHHHHH
T ss_pred HHHHcCCC--EEEECCCCCChHHHH
Confidence 33456765 788899999999763
No 321
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=21.30 E-value=34 Score=40.59 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=13.8
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|.-.|++|||||+++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4667899999999987
No 322
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=21.16 E-value=4.7e+02 Score=32.97 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.6
Q ss_pred HhhHHHHHHHHHHHHhhhhH
Q 001229 914 KKVTEELDDALSRAVLGHAR 933 (1119)
Q Consensus 914 k~c~eel~~al~~a~~ghar 933 (1119)
.+++.||+..|+.|+..|.-
T Consensus 291 ~~k~~dL~r~L~~Avvdqvs 310 (832)
T 4igg_A 291 TKKTRDLRRQLRKAVMDHVS 310 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999864
No 323
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.14 E-value=1.3e+02 Score=26.88 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=26.5
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001229 1023 ELLVRLKEAEQAASVAEANFSGVQQENEKLKKQIDKLKRKHKMEMITMKQY 1073 (1119)
Q Consensus 1023 ellvrl~eaeea~~~a~~~~~~~~qe~~k~~~q~~klk~kh~~e~~t~~~~ 1073 (1119)
||.-+|+.+++..+.+. +.|.+ ..+.+|+++..+|. |||+.
T Consensus 17 el~~klk~~~ee~~~~~------eee~~---~~~~~lek~L~~E~-~LK~Q 57 (71)
T 1s1c_X 17 ELTEKMKKAEEEYKLEK------EEEIS---NLKAAFEKNINTER-TLKTQ 57 (71)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHH---THHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHH---HHHHHHHHHHHHHH-HHHHH
Confidence 56677777777766544 33333 55567888888887 66653
No 324
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=21.05 E-value=58 Score=37.83 Aligned_cols=18 Identities=39% Similarity=0.423 Sum_probs=14.6
Q ss_pred cceeeecccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM~ 182 (1119)
..|+..|.+|+|||+|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356667999999999874
No 325
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=20.94 E-value=25 Score=33.62 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=13.1
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999854
No 326
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=20.91 E-value=31 Score=44.61 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=17.4
Q ss_pred HHHHHcCCCcceeeecccccccccc
Q 001229 156 VKNALAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 156 V~~vL~GyN~tIfAYGQTGSGKTyT 180 (1119)
|..++.|.+ ++..|+||||||..
T Consensus 193 I~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 193 ISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCChHHH
Confidence 444567754 68899999999965
No 327
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=20.90 E-value=58 Score=35.60 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=13.6
Q ss_pred ceeeecccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTMW 182 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM~ 182 (1119)
.|...|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45567999999999873
No 328
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=20.70 E-value=23 Score=36.80 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.5
Q ss_pred cceeeeccccccccccc
Q 001229 165 VSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 165 ~tIfAYGQTGSGKTyTM 181 (1119)
..|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45788899999999875
No 329
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.60 E-value=4.6e+02 Score=29.81 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHhc
Q 001229 920 LDDALSRAVLGHARMVEHYADLQEKYNDLVSRH----------RAIMEGVAEVKRAAAKAG 970 (1119)
Q Consensus 920 l~~al~~a~~ghar~~e~y~~l~e~~~~l~~~h----------r~i~~gi~~vk~aaakag 970 (1119)
+.++++.++.|-.-.=|--.+++++.+.+|.+= +-|+.+|++++|--..+-
T Consensus 357 ~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 417 (471)
T 3mq9_A 357 VRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVE 417 (471)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHH
Confidence 444555555554433344444444444444433 336677888877655543
No 330
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=20.56 E-value=29 Score=43.08 Aligned_cols=15 Identities=47% Similarity=0.643 Sum_probs=12.7
Q ss_pred ceeeecccccccccc
Q 001229 166 SLLSYGQTGSGKTYT 180 (1119)
Q Consensus 166 tIfAYGQTGSGKTyT 180 (1119)
.++..|+||||||..
T Consensus 111 ~vii~gpTGSGKTtl 125 (773)
T 2xau_A 111 IMVFVGETGSGKTTQ 125 (773)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467789999999983
No 331
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=20.52 E-value=25 Score=35.36 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=13.7
Q ss_pred ceeeeccccccccccc
Q 001229 166 SLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 166 tIfAYGQTGSGKTyTM 181 (1119)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999864
No 332
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=20.29 E-value=30 Score=34.78 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.3
Q ss_pred Ccceeeeccccccccccc
Q 001229 164 NVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 164 N~tIfAYGQTGSGKTyTM 181 (1119)
...|+-.|.+|||||+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345677899999999764
No 333
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=20.26 E-value=3.6e+02 Score=23.57 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Q 001229 991 VERDREREFLKKENKSLKIQLRDTAEAVHAAGELLVRLKEAEQAASVAEANFSGVQQENEKLKK 1054 (1119)
Q Consensus 991 ~ereke~~~~~~en~~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~~~~~~~qe~~k~~~ 1054 (1119)
.+|++|-..|-.....|..=..|-|.-|+.=||+|-|. |.-+..|..+...+..+..||.+
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~I---e~nv~~a~~~v~~g~~~L~kA~~ 66 (77)
T 1jth_B 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI---EYNVEHAVDYVERAVSDTKKAVK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888899999999999999999999999999887 55666666666666666666654
No 334
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=20.21 E-value=43 Score=43.45 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=17.3
Q ss_pred HcCCCcceeeeccccccccccc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYTM 181 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyTM 181 (1119)
-.|...-++..|+||||||.+.
T Consensus 620 ~~g~p~d~ll~~~TGsGKT~va 641 (1151)
T 2eyq_A 620 CQPLAMDRLVCGDVGFGKTEVA 641 (1151)
T ss_dssp HSSSCCEEEEECCCCTTTHHHH
T ss_pred hcCCcCcEEEECCCCCCHHHHH
Confidence 3476557889999999999753
No 335
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=20.10 E-value=25 Score=43.03 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=14.9
Q ss_pred HcCCCcceeeecccccccccc
Q 001229 160 LAGYNVSLLSYGQTGSGKTYT 180 (1119)
Q Consensus 160 L~GyN~tIfAYGQTGSGKTyT 180 (1119)
++|. .|+..|+||||||+.
T Consensus 153 l~rk--~vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 153 MQRK--IIFHSGPTNSGKTYH 171 (677)
T ss_dssp SCCE--EEEEECCTTSSHHHH
T ss_pred cCCC--EEEEEcCCCCCHHHH
Confidence 4443 478899999999984
No 336
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.06 E-value=4.9e+02 Score=23.93 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.9
Q ss_pred HHHHHHhhHHHHHHhhhh
Q 001229 997 REFLKKENKSLKIQLRDT 1014 (1119)
Q Consensus 997 ~~~~~~en~~l~~qlrdt 1014 (1119)
.++|-.+|+-|..+++..
T Consensus 25 VR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 378999999999988654
Done!